Query 016794
Match_columns 382
No_of_seqs 209 out of 1643
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 5.2E-63 1.1E-67 469.8 33.0 300 49-366 5-311 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.4E-62 5.3E-67 456.2 31.5 314 46-370 13-331 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 6.7E-60 1.5E-64 432.2 25.6 262 43-367 3-267 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 2.3E-57 4.9E-62 434.0 30.8 304 48-362 2-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 3.9E-57 8.3E-62 437.0 31.2 309 41-365 11-334 (346)
6 PRK10625 tas putative aldo-ket 100.0 3.2E-56 7E-61 431.1 31.3 303 43-365 1-340 (346)
7 PLN02587 L-galactose dehydroge 100.0 2.3E-55 5.1E-60 419.7 32.2 287 49-365 3-301 (314)
8 PRK11172 dkgB 2,5-diketo-D-glu 100.0 7.9E-54 1.7E-58 399.9 27.6 250 56-367 2-255 (267)
9 KOG1577 Aldo/keto reductase fa 100.0 5.3E-54 1.1E-58 393.2 24.2 267 45-367 6-288 (300)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 3.8E-53 8.3E-58 399.4 30.1 278 49-361 3-284 (285)
11 PRK14863 bifunctional regulato 100.0 7.1E-54 1.5E-58 404.3 24.2 268 54-360 2-278 (292)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.8E-53 3.9E-58 401.2 26.8 277 59-363 1-282 (283)
13 PRK10376 putative oxidoreducta 100.0 2.5E-52 5.4E-57 394.3 30.4 264 54-365 14-289 (290)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.6E-51 3.4E-56 385.7 26.9 259 45-367 6-265 (275)
15 COG4989 Predicted oxidoreducta 100.0 1.8E-49 3.8E-54 348.3 22.1 283 43-365 1-294 (298)
16 COG1453 Predicted oxidoreducta 100.0 3.7E-46 8E-51 344.7 23.6 284 43-377 1-299 (391)
17 KOG1576 Predicted oxidoreducta 100.0 1.5E-44 3.3E-49 319.3 25.1 311 16-367 4-328 (342)
18 KOG3023 Glutamate-cysteine lig 97.7 0.00012 2.6E-09 65.2 6.6 72 175-247 155-227 (285)
19 PF07021 MetW: Methionine bios 91.8 3.4 7.3E-05 36.4 11.4 151 81-253 5-172 (193)
20 cd03174 DRE_TIM_metallolyase D 84.7 4.6 9.9E-05 37.2 8.1 106 138-247 15-135 (265)
21 PRK10558 alpha-dehydro-beta-de 82.5 14 0.00031 34.2 10.3 67 182-249 10-78 (256)
22 PRK00208 thiG thiazole synthas 80.9 46 0.00099 30.6 14.3 107 136-245 70-180 (250)
23 cd03319 L-Ala-DL-Glu_epimerase 80.1 51 0.0011 31.2 13.6 153 75-252 134-291 (316)
24 TIGR01290 nifB nitrogenase cof 78.4 68 0.0015 32.3 14.3 112 138-253 59-200 (442)
25 PRK08609 hypothetical protein; 78.3 61 0.0013 33.8 14.3 151 78-244 350-522 (570)
26 COG1140 NarY Nitrate reductase 78.0 1.3 2.8E-05 42.6 1.8 55 188-242 263-317 (513)
27 PRK08392 hypothetical protein; 77.7 52 0.0011 29.4 14.9 147 78-244 15-178 (215)
28 TIGR03239 GarL 2-dehydro-3-deo 77.3 27 0.00058 32.2 10.2 66 183-249 4-71 (249)
29 PRK10128 2-keto-3-deoxy-L-rham 74.7 42 0.00091 31.3 10.8 68 182-249 9-77 (267)
30 cd04728 ThiG Thiazole synthase 72.9 77 0.0017 29.1 14.1 107 136-245 70-180 (248)
31 TIGR01228 hutU urocanate hydra 68.9 12 0.00025 37.7 5.9 61 152-220 195-257 (545)
32 cd06543 GH18_PF-ChiA-like PF-C 68.3 62 0.0013 30.6 10.6 68 121-188 69-136 (294)
33 PRK05414 urocanate hydratase; 68.2 12 0.00027 37.7 5.9 61 152-220 204-266 (556)
34 cd03315 MLE_like Muconate lact 66.4 1.1E+02 0.0023 28.2 14.7 156 75-252 85-243 (265)
35 COG2987 HutU Urocanate hydrata 65.5 12 0.00026 37.1 5.2 57 153-217 205-261 (561)
36 TIGR02311 HpaI 2,4-dihydroxyhe 64.8 99 0.0021 28.4 11.0 67 182-248 3-70 (249)
37 cd07943 DRE_TIM_HOA 4-hydroxy- 63.8 41 0.00089 31.1 8.4 105 138-246 18-131 (263)
38 PF07994 NAD_binding_5: Myo-in 63.3 30 0.00065 32.8 7.4 141 141-334 131-279 (295)
39 PRK05692 hydroxymethylglutaryl 62.9 1.4E+02 0.003 28.2 18.8 213 138-366 22-281 (287)
40 TIGR00190 thiC thiamine biosyn 62.5 1.7E+02 0.0036 29.0 18.7 142 74-244 74-220 (423)
41 PRK13796 GTPase YqeH; Provisio 62.3 1.4E+02 0.003 29.1 12.2 124 74-208 54-180 (365)
42 cd03316 MR_like Mandelate race 62.0 1.5E+02 0.0033 28.4 14.1 150 75-247 139-298 (357)
43 cd00308 enolase_like Enolase-s 61.6 71 0.0015 28.7 9.4 87 160-252 120-208 (229)
44 COG2069 CdhD CO dehydrogenase/ 61.3 1.5E+02 0.0032 28.1 11.4 91 153-250 161-261 (403)
45 COG1748 LYS9 Saccharopine dehy 59.6 42 0.00091 33.1 7.9 81 77-171 79-159 (389)
46 TIGR00126 deoC deoxyribose-pho 59.4 77 0.0017 28.4 9.0 71 74-159 129-205 (211)
47 TIGR00381 cdhD CO dehydrogenas 59.3 1.9E+02 0.004 28.5 12.6 92 153-252 150-252 (389)
48 TIGR02026 BchE magnesium-proto 58.7 96 0.0021 31.6 10.8 65 175-241 322-392 (497)
49 TIGR00735 hisF imidazoleglycer 57.6 1.5E+02 0.0033 27.1 14.7 87 152-243 164-253 (254)
50 TIGR03822 AblA_like_2 lysine-2 56.6 1.9E+02 0.004 27.7 12.7 110 140-253 120-240 (321)
51 PRK06015 keto-hydroxyglutarate 56.5 38 0.00081 30.2 6.4 87 140-244 14-101 (201)
52 cd07944 DRE_TIM_HOA_like 4-hyd 56.2 82 0.0018 29.2 9.0 105 138-246 16-128 (266)
53 TIGR01378 thi_PPkinase thiamin 55.9 1.1E+02 0.0024 27.1 9.4 40 308-347 71-110 (203)
54 TIGR00221 nagA N-acetylglucosa 55.6 1.9E+02 0.0041 28.4 11.9 134 75-213 75-214 (380)
55 PRK06740 histidinol-phosphatas 54.5 2.1E+02 0.0045 27.6 17.3 98 147-245 157-289 (331)
56 PF05913 DUF871: Bacterial pro 53.9 33 0.00072 33.4 6.1 206 75-345 12-234 (357)
57 PRK14461 ribosomal RNA large s 53.8 73 0.0016 31.2 8.4 88 163-251 232-352 (371)
58 PRK04452 acetyl-CoA decarbonyl 53.8 1.6E+02 0.0035 28.2 10.6 92 153-249 86-184 (319)
59 TIGR01182 eda Entner-Doudoroff 53.4 45 0.00098 29.7 6.4 88 140-245 18-106 (204)
60 TIGR03822 AblA_like_2 lysine-2 53.4 2.1E+02 0.0045 27.3 12.8 106 75-190 120-228 (321)
61 PF01175 Urocanase: Urocanase; 53.1 32 0.00069 34.8 5.8 61 152-220 194-256 (546)
62 PF03102 NeuB: NeuB family; I 52.6 1.1E+02 0.0023 28.1 8.9 113 74-202 53-183 (241)
63 PRK09613 thiH thiamine biosynt 52.4 2.2E+02 0.0047 29.0 11.8 106 138-246 114-238 (469)
64 PLN02746 hydroxymethylglutaryl 52.3 62 0.0014 31.4 7.7 105 139-247 65-182 (347)
65 TIGR01496 DHPS dihydropteroate 52.1 2E+02 0.0042 26.6 10.9 100 139-247 20-125 (257)
66 COG4464 CapC Capsular polysacc 50.4 99 0.0021 27.9 7.8 114 72-194 15-134 (254)
67 PF01081 Aldolase: KDPG and KH 50.2 39 0.00084 30.0 5.4 46 192-245 60-106 (196)
68 COG3653 N-acyl-D-aspartate/D-g 50.2 2.8E+02 0.0061 27.8 12.8 135 77-242 182-331 (579)
69 PRK00164 moaA molybdenum cofac 49.7 2.4E+02 0.0051 26.9 14.5 155 73-244 48-227 (331)
70 PRK07945 hypothetical protein; 48.5 2.6E+02 0.0056 26.9 16.8 152 77-244 111-288 (335)
71 cd00739 DHPS DHPS subgroup of 47.7 2.3E+02 0.005 26.1 11.4 102 139-247 21-127 (257)
72 cd07939 DRE_TIM_NifV Streptomy 47.1 1.5E+02 0.0034 27.1 9.3 99 138-244 16-127 (259)
73 cd00959 DeoC 2-deoxyribose-5-p 47.0 1.3E+02 0.0027 26.6 8.4 69 74-157 128-202 (203)
74 PRK06552 keto-hydroxyglutarate 46.7 60 0.0013 29.1 6.2 87 140-244 23-113 (213)
75 PRK07328 histidinol-phosphatas 46.2 2.4E+02 0.0053 26.0 17.2 99 145-244 94-225 (269)
76 TIGR02026 BchE magnesium-proto 46.2 3.4E+02 0.0074 27.7 13.9 18 140-157 223-240 (497)
77 PRK13753 dihydropteroate synth 45.9 2.6E+02 0.0057 26.2 10.9 102 139-249 22-128 (279)
78 cd04740 DHOD_1B_like Dihydroor 45.8 2.6E+02 0.0056 26.1 14.0 153 75-241 100-286 (296)
79 PRK05283 deoxyribose-phosphate 45.6 1.3E+02 0.0029 27.8 8.4 78 74-161 143-227 (257)
80 cd00423 Pterin_binding Pterin 45.0 2.5E+02 0.0054 25.8 11.3 103 139-248 21-128 (258)
81 cd03322 rpsA The starvation se 44.9 1.3E+02 0.0028 29.3 8.8 83 160-248 189-273 (361)
82 COG2022 ThiG Uncharacterized e 44.6 1E+02 0.0022 28.2 7.0 74 137-211 78-151 (262)
83 PRK10550 tRNA-dihydrouridine s 43.9 2.9E+02 0.0064 26.3 13.8 134 75-220 73-224 (312)
84 PRK06424 transcription factor; 43.7 64 0.0014 27.1 5.5 29 294-322 83-111 (144)
85 COG2102 Predicted ATPases of P 43.4 53 0.0012 29.6 5.2 98 175-312 75-177 (223)
86 cd03318 MLE Muconate Lactonizi 42.9 1.4E+02 0.003 29.0 8.7 73 178-251 227-301 (365)
87 PRK09856 fructoselysine 3-epim 42.9 2.3E+02 0.0049 25.9 9.8 20 231-250 94-113 (275)
88 COG2355 Zn-dependent dipeptida 42.8 1.3E+02 0.0028 28.8 7.9 30 330-361 270-300 (313)
89 PRK15072 bifunctional D-altron 42.3 1.9E+02 0.0041 28.6 9.6 84 160-249 232-317 (404)
90 PRK08776 cystathionine gamma-s 41.5 2.7E+02 0.0059 27.5 10.6 87 161-252 100-187 (405)
91 cd07948 DRE_TIM_HCS Saccharomy 41.3 1.6E+02 0.0035 27.2 8.4 102 138-247 18-132 (262)
92 TIGR00048 radical SAM enzyme, 41.2 2E+02 0.0043 28.0 9.3 89 163-251 219-333 (355)
93 TIGR03217 4OH_2_O_val_ald 4-hy 41.1 2.5E+02 0.0053 27.1 9.9 106 137-246 19-133 (333)
94 PRK13958 N-(5'-phosphoribosyl) 41.0 74 0.0016 28.4 5.9 67 152-222 17-84 (207)
95 PRK08195 4-hyroxy-2-oxovalerat 40.9 2.3E+02 0.005 27.3 9.7 107 136-246 19-134 (337)
96 PRK02399 hypothetical protein; 40.8 66 0.0014 31.8 5.9 49 147-204 200-248 (406)
97 PRK07535 methyltetrahydrofolat 40.7 3E+02 0.0065 25.5 11.4 99 140-247 23-123 (261)
98 PRK13361 molybdenum cofactor b 40.2 3.4E+02 0.0073 25.9 12.8 100 73-190 44-154 (329)
99 PRK02083 imidazole glycerol ph 40.0 2.9E+02 0.0063 25.1 14.4 83 160-243 167-251 (253)
100 PRK13352 thiamine biosynthesis 39.9 3.9E+02 0.0085 26.6 18.7 150 73-255 73-230 (431)
101 TIGR01928 menC_lowGC/arch o-su 39.5 1E+02 0.0022 29.5 7.0 88 160-253 198-287 (324)
102 PLN02428 lipoic acid synthase 38.9 3.8E+02 0.0082 26.1 15.4 160 74-251 130-325 (349)
103 cd03327 MR_like_2 Mandelate ra 38.8 3.6E+02 0.0078 25.8 13.8 82 160-247 197-280 (341)
104 PRK07114 keto-hydroxyglutarate 38.7 2.6E+02 0.0055 25.3 9.0 90 140-244 25-116 (222)
105 PRK05588 histidinol-phosphatas 38.2 3.1E+02 0.0068 24.9 17.1 106 77-195 16-143 (255)
106 PRK09058 coproporphyrinogen II 37.6 3E+02 0.0065 27.7 10.3 28 139-167 227-254 (449)
107 COG0135 TrpF Phosphoribosylant 37.3 2.8E+02 0.006 24.8 8.8 81 153-244 19-102 (208)
108 TIGR03471 HpnJ hopanoid biosyn 36.8 3.2E+02 0.007 27.5 10.5 66 175-242 322-393 (472)
109 cd01948 EAL EAL domain. This d 36.3 2E+02 0.0042 25.4 8.1 100 142-245 98-207 (240)
110 PF11242 DUF2774: Protein of u 36.3 48 0.001 23.4 3.0 23 299-321 15-37 (63)
111 PF00682 HMGL-like: HMGL-like 36.0 1.7E+02 0.0036 26.3 7.6 98 139-243 11-124 (237)
112 PRK14017 galactonate dehydrata 36.0 2.1E+02 0.0046 28.0 8.8 83 160-248 203-287 (382)
113 PRK11840 bifunctional sulfur c 35.9 3.9E+02 0.0085 25.7 10.0 74 137-211 145-218 (326)
114 PRK15108 biotin synthase; Prov 35.8 4.1E+02 0.0089 25.6 12.9 110 139-252 76-196 (345)
115 TIGR03070 couple_hipB transcri 35.6 38 0.00083 22.5 2.6 24 298-321 5-28 (58)
116 TIGR02534 mucon_cyclo muconate 35.4 1.9E+02 0.0041 28.1 8.3 74 178-252 226-301 (368)
117 TIGR01278 DPOR_BchB light-inde 35.1 5.1E+02 0.011 26.5 11.8 69 141-209 97-185 (511)
118 TIGR02080 O_succ_thio_ly O-suc 35.1 4E+02 0.0088 26.0 10.6 87 161-252 91-178 (382)
119 TIGR02660 nifV_homocitr homoci 35.0 4.3E+02 0.0094 25.7 13.3 99 138-244 19-130 (365)
120 COG4130 Predicted sugar epimer 35.0 3.5E+02 0.0075 24.5 8.8 55 200-254 50-110 (272)
121 PRK01222 N-(5'-phosphoribosyl) 34.9 2.1E+02 0.0045 25.5 7.8 66 153-222 20-86 (210)
122 TIGR01502 B_methylAsp_ase meth 34.5 2.5E+02 0.0054 27.9 8.9 87 160-249 264-357 (408)
123 PF06792 UPF0261: Uncharacteri 34.2 90 0.0019 30.9 5.7 39 149-194 201-239 (403)
124 cd04731 HisF The cyclase subun 34.0 3.5E+02 0.0076 24.3 14.0 124 75-210 82-214 (243)
125 COG2089 SpsE Sialic acid synth 33.3 4.5E+02 0.0097 25.3 11.8 119 74-208 87-223 (347)
126 cd02801 DUS_like_FMN Dihydrour 33.2 3.4E+02 0.0075 24.0 11.1 124 75-210 65-204 (231)
127 PRK06361 hypothetical protein; 33.1 3.4E+02 0.0073 23.8 17.6 152 78-247 11-168 (212)
128 PRK14459 ribosomal RNA large s 32.6 3E+02 0.0065 27.0 9.0 90 162-251 241-359 (373)
129 PLN02363 phosphoribosylanthran 32.1 1.3E+02 0.0028 27.9 6.1 75 140-222 56-131 (256)
130 PF01876 RNase_P_p30: RNase P 31.9 2E+02 0.0044 23.9 6.9 60 190-250 24-85 (150)
131 COG3623 SgaU Putative L-xylulo 31.9 77 0.0017 28.9 4.3 47 51-98 64-117 (287)
132 PRK13352 thiamine biosynthesis 31.8 1.1E+02 0.0025 30.2 5.9 95 177-311 122-222 (431)
133 TIGR03278 methan_mark_10 putat 31.5 5.3E+02 0.012 25.6 11.7 20 176-195 89-108 (404)
134 PF05690 ThiG: Thiazole biosyn 31.3 4.2E+02 0.009 24.3 10.6 108 137-247 71-182 (247)
135 COG0626 MetC Cystathionine bet 30.8 2.3E+02 0.005 28.0 8.0 82 175-256 112-195 (396)
136 PF00682 HMGL-like: HMGL-like 30.6 3.9E+02 0.0085 23.8 13.1 149 74-239 11-178 (237)
137 COG2896 MoaA Molybdenum cofact 30.1 5E+02 0.011 24.9 11.3 138 74-251 43-193 (322)
138 PRK06294 coproporphyrinogen II 30.0 5.3E+02 0.011 25.1 10.7 28 138-166 166-193 (370)
139 PRK11858 aksA trans-homoaconit 30.0 3.4E+02 0.0074 26.6 9.1 99 138-246 22-135 (378)
140 cd04742 NPD_FabD 2-Nitropropan 29.8 2.4E+02 0.0052 28.2 7.9 67 181-248 30-103 (418)
141 TIGR02090 LEU1_arch isopropylm 29.7 3.2E+02 0.007 26.6 8.8 99 138-244 18-129 (363)
142 PF01402 RHH_1: Ribbon-helix-h 29.7 88 0.0019 19.2 3.3 21 295-315 9-29 (39)
143 PRK08861 cystathionine gamma-s 28.9 5.7E+02 0.012 25.1 11.3 90 160-254 92-182 (388)
144 PF14871 GHL6: Hypothetical gl 28.6 56 0.0012 26.9 2.8 25 226-250 43-67 (132)
145 TIGR03597 GTPase_YqeH ribosome 28.2 4.1E+02 0.009 25.8 9.3 79 128-208 96-174 (360)
146 TIGR03821 AblA_like_1 lysine-2 28.2 5.3E+02 0.012 24.6 12.3 75 178-253 161-246 (321)
147 TIGR00035 asp_race aspartate r 27.5 3.7E+02 0.0079 24.1 8.3 64 140-204 15-89 (229)
148 PF13407 Peripla_BP_4: Peripla 27.4 3.4E+02 0.0074 24.1 8.2 69 142-217 14-86 (257)
149 PRK11613 folP dihydropteroate 27.3 4.1E+02 0.009 24.9 8.7 100 140-247 36-140 (282)
150 PRK07811 cystathionine gamma-s 27.0 5.4E+02 0.012 25.1 10.0 102 146-253 87-189 (388)
151 PF06506 PrpR_N: Propionate ca 27.0 1.5E+02 0.0032 25.4 5.4 65 175-245 63-130 (176)
152 PRK08247 cystathionine gamma-s 27.0 5.8E+02 0.013 24.6 10.4 87 161-253 91-179 (366)
153 COG0820 Predicted Fe-S-cluster 27.0 4.8E+02 0.01 25.4 9.1 88 163-251 216-330 (349)
154 PRK11170 nagA N-acetylglucosam 26.9 6.1E+02 0.013 24.8 11.8 34 180-213 179-212 (382)
155 PLN00191 enolase 26.7 5.2E+02 0.011 26.1 9.8 96 139-245 295-393 (457)
156 CHL00200 trpA tryptophan synth 26.7 5.2E+02 0.011 23.9 14.5 27 74-100 26-52 (263)
157 PF01053 Cys_Met_Meta_PP: Cys/ 26.3 2.1E+02 0.0045 28.2 6.8 82 175-256 104-187 (386)
158 cd00740 MeTr MeTr subgroup of 26.3 5.1E+02 0.011 23.8 10.6 102 139-248 23-127 (252)
159 PF11020 DUF2610: Domain of un 26.2 1.6E+02 0.0034 22.0 4.3 29 289-317 46-74 (82)
160 COG1121 ZnuC ABC-type Mn/Zn tr 26.1 3.2E+02 0.007 25.2 7.5 67 140-209 113-207 (254)
161 PRK14464 ribosomal RNA large s 26.0 4.3E+02 0.0093 25.7 8.7 77 175-251 225-317 (344)
162 cd03314 MAL Methylaspartate am 25.9 6.1E+02 0.013 24.8 9.9 85 162-248 229-320 (369)
163 PF01118 Semialdhyde_dh: Semia 25.9 99 0.0021 24.6 3.8 27 75-101 75-101 (121)
164 PF00356 LacI: Bacterial regul 25.9 1.2E+02 0.0025 20.0 3.4 42 300-349 2-43 (46)
165 PRK02866 cyanate hydratase; Va 25.7 1.2E+02 0.0026 25.5 4.2 63 298-362 8-70 (147)
166 PRK09726 antitoxin HipB; Provi 25.7 84 0.0018 23.6 3.1 57 297-353 14-70 (88)
167 PF00809 Pterin_bind: Pterin b 25.6 2.9E+02 0.0062 24.5 7.1 89 154-249 30-125 (210)
168 cd03323 D-glucarate_dehydratas 25.2 4.3E+02 0.0093 26.1 8.9 81 161-249 239-321 (395)
169 PRK10128 2-keto-3-deoxy-L-rham 25.2 3.3E+02 0.0072 25.3 7.6 68 155-224 165-243 (267)
170 PF13378 MR_MLE_C: Enolase C-t 24.9 1E+02 0.0023 23.9 3.7 54 197-252 3-57 (111)
171 PRK14453 chloramphenicol/florf 24.8 3.9E+02 0.0084 25.9 8.3 94 158-251 203-330 (347)
172 PRK14456 ribosomal RNA large s 24.7 3.8E+02 0.0083 26.2 8.3 89 163-251 238-353 (368)
173 PRK14462 ribosomal RNA large s 24.6 5.8E+02 0.013 24.9 9.4 87 165-251 226-338 (356)
174 COG0773 MurC UDP-N-acetylmuram 24.3 51 0.0011 33.2 2.1 29 303-331 112-141 (459)
175 PF05368 NmrA: NmrA-like famil 24.2 2.8E+02 0.0062 24.4 6.9 84 159-252 22-106 (233)
176 PRK00077 eno enolase; Provisio 24.0 7.3E+02 0.016 24.7 10.8 96 139-245 261-361 (425)
177 TIGR03550 F420_cofG 7,8-dideme 23.8 6.3E+02 0.014 24.0 11.7 34 178-211 86-120 (322)
178 PRK09248 putative hydrolase; V 23.6 5.5E+02 0.012 23.2 15.4 87 158-245 95-190 (246)
179 TIGR02370 pyl_corrinoid methyl 23.6 5E+02 0.011 22.7 9.3 147 75-241 10-164 (197)
180 PRK05718 keto-hydroxyglutarate 23.5 2.7E+02 0.0059 24.9 6.5 87 140-244 25-112 (212)
181 cd03325 D-galactonate_dehydrat 23.4 6.7E+02 0.015 24.1 15.5 82 160-247 202-285 (352)
182 PRK00912 ribonuclease P protei 23.2 5.5E+02 0.012 23.0 16.3 140 77-245 16-172 (237)
183 PRK08045 cystathionine gamma-s 23.2 5.3E+02 0.011 25.2 9.1 55 198-252 124-179 (386)
184 PF09989 DUF2229: CoA enzyme a 23.0 5.5E+02 0.012 23.0 11.1 34 213-246 185-218 (221)
185 PRK10200 putative racemase; Pr 23.0 5.5E+02 0.012 23.1 8.5 69 140-209 15-94 (230)
186 TIGR01329 cysta_beta_ly_E cyst 22.8 4.7E+02 0.01 25.5 8.6 54 199-252 119-173 (378)
187 TIGR01428 HAD_type_II 2-haloal 22.8 1.7E+02 0.0038 25.1 5.1 96 144-242 61-164 (198)
188 TIGR00284 dihydropteroate synt 22.7 6.3E+02 0.014 25.9 9.5 94 142-247 165-258 (499)
189 PF14502 HTH_41: Helix-turn-he 22.4 79 0.0017 21.1 2.1 29 298-326 7-37 (48)
190 PRK11194 ribosomal RNA large s 22.4 4.1E+02 0.0089 26.1 8.0 87 164-250 221-336 (372)
191 PRK13803 bifunctional phosphor 22.4 4.5E+02 0.0098 27.7 8.8 95 141-244 13-108 (610)
192 CHL00076 chlB photochlorophyll 22.3 8.6E+02 0.019 24.9 12.4 91 160-250 117-248 (513)
193 TIGR03820 lys_2_3_AblA lysine- 22.2 8E+02 0.017 24.5 10.7 123 74-209 138-270 (417)
194 PF07287 DUF1446: Protein of u 22.0 3.3E+02 0.0071 26.7 7.1 18 230-247 61-78 (362)
195 COG0825 AccA Acetyl-CoA carbox 22.0 2.2E+02 0.0049 26.8 5.6 25 76-100 136-163 (317)
196 COG1564 THI80 Thiamine pyropho 22.0 2.1E+02 0.0045 25.7 5.3 42 306-347 74-115 (212)
197 TIGR03821 AblA_like_1 lysine-2 22.0 7E+02 0.015 23.8 10.3 103 75-190 126-234 (321)
198 PF10668 Phage_terminase: Phag 21.9 1.4E+02 0.003 21.0 3.3 17 299-315 24-40 (60)
199 PRK05628 coproporphyrinogen II 21.9 7.4E+02 0.016 24.0 11.6 27 139-166 172-198 (375)
200 PF07745 Glyco_hydro_53: Glyco 21.8 2.6E+02 0.0056 27.0 6.3 77 292-378 213-294 (332)
201 cd03770 SR_TndX_transposase Se 21.7 1.7E+02 0.0036 24.1 4.5 44 145-188 54-97 (140)
202 PRK10508 hypothetical protein; 21.5 1.5E+02 0.0032 28.6 4.7 43 139-187 286-328 (333)
203 cd03317 NAAAR N-acylamino acid 21.5 3.7E+02 0.0081 25.8 7.6 86 160-251 203-290 (354)
204 cd00668 Ile_Leu_Val_MetRS_core 21.4 1.2E+02 0.0026 28.7 4.0 48 142-193 82-131 (312)
205 COG0635 HemN Coproporphyrinoge 21.4 2.3E+02 0.005 28.2 6.1 62 138-201 200-276 (416)
206 cd00452 KDPG_aldolase KDPG and 21.3 5.4E+02 0.012 22.2 15.1 110 75-219 14-123 (190)
207 PRK14465 ribosomal RNA large s 21.3 5.9E+02 0.013 24.7 8.7 89 163-251 216-329 (342)
208 cd07942 DRE_TIM_LeuA Mycobacte 21.3 4.5E+02 0.0097 24.7 7.7 95 139-242 20-135 (284)
209 COG1751 Uncharacterized conser 21.3 3.2E+02 0.0069 23.3 5.8 74 75-158 12-85 (186)
210 TIGR02764 spore_ybaN_pdaB poly 21.2 5.3E+02 0.011 22.1 8.5 45 140-189 137-181 (191)
211 PRK07259 dihydroorotate dehydr 21.1 6.8E+02 0.015 23.3 12.5 153 75-241 102-289 (301)
212 cd06543 GH18_PF-ChiA-like PF-C 20.9 7.1E+02 0.015 23.5 14.5 179 60-252 72-265 (294)
213 TIGR03700 mena_SCO4494 putativ 20.9 7.6E+02 0.016 23.8 13.4 111 138-252 78-213 (351)
214 PRK09856 fructoselysine 3-epim 20.8 4.5E+02 0.0097 23.9 7.7 22 230-251 50-71 (275)
215 PTZ00445 p36-lilke protein; Pr 20.8 4.4E+02 0.0095 23.8 7.0 89 76-167 77-186 (219)
216 smart00052 EAL Putative diguan 20.7 4.4E+02 0.0095 23.0 7.5 99 143-246 100-209 (241)
217 cd01573 modD_like ModD; Quinol 20.6 3.1E+02 0.0068 25.5 6.5 63 179-245 171-235 (272)
218 cd07938 DRE_TIM_HMGL 3-hydroxy 20.5 2.5E+02 0.0055 26.1 5.9 101 139-245 17-132 (274)
219 TIGR00216 ispH_lytB (E)-4-hydr 20.5 4.5E+02 0.0097 24.7 7.4 44 298-344 224-273 (280)
220 CHL00162 thiG thiamin biosynth 20.4 4.3E+02 0.0094 24.5 7.0 54 138-191 80-139 (267)
221 PRK08248 O-acetylhomoserine am 20.3 8.6E+02 0.019 24.2 10.9 61 191-251 129-190 (431)
222 PRK10605 N-ethylmaleimide redu 20.3 8E+02 0.017 23.8 11.9 24 73-96 148-178 (362)
223 PF13380 CoA_binding_2: CoA bi 20.3 2.3E+02 0.0049 22.5 4.8 18 228-245 90-107 (116)
224 TIGR00676 fadh2 5,10-methylene 20.2 6.9E+02 0.015 23.1 19.7 155 77-253 15-192 (272)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=5.2e-63 Score=469.79 Aligned_cols=300 Identities=23% Similarity=0.412 Sum_probs=258.1
Q ss_pred ecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcC--hHHHHHHHHHhhhhhcCCccceeeE
Q 016794 49 KNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYG--PAEDLYGIFINRVRRERPPEFLDKV 126 (382)
Q Consensus 49 ~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG--~sE~~lG~al~~~~~~~~~~~~~~~ 126 (382)
.+|++|++||+||||||.+|+.+...+.+++.++|++|+|+||||||||+.|| .||++||++|+..++ |+ ++++.+
T Consensus 5 ~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~-Rd-~vvIaT 82 (316)
T COG0667 5 RLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGR-RD-KVVIAT 82 (316)
T ss_pred ecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCC-CC-eEEEEE
Confidence 34999999999999999998765556667888999999999999999999998 599999999998764 33 677777
Q ss_pred eeecccCC-C---CCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHH
Q 016794 127 RGLTKWVP-P---PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 202 (382)
Q Consensus 127 ~~~tk~~~-~---~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~ 202 (382)
|++....+ . ..++++++|+++++.||+|||||||||||+|+||+..+ .++++++|++|+++||||+||+||++.+
T Consensus 83 K~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~S~~~~~ 161 (316)
T COG0667 83 KVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-IEETLEALDELVREGKIRYIGVSNYSAE 161 (316)
T ss_pred eeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 77655431 1 14679999999999999999999999999999999888 8999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCC-chhHHhH
Q 016794 203 RLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNT-PSLQKYK 281 (382)
Q Consensus 203 ~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 281 (382)
++.++.+...+++++|.+||+++|..+.+++++|+++||++++||||++|+|++++... ..+.+... +.+..
T Consensus 162 ~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~-----~~~~r~~~~~~~~~-- 234 (316)
T COG0667 162 QIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG-----PEGSRASELPRFQR-- 234 (316)
T ss_pred HHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC-----cchhhccccccchh--
Confidence 99999875457999999999999888888999999999999999999999999998763 01111111 11110
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHHHH
Q 016794 282 RMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 361 (382)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l~~ 361 (382)
+..+....+.+.++++|+++|+|++|+||+|++++|.|+++|+|+++ ++||++|+++++..|++++++.|++
T Consensus 235 ------~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~--~~qL~en~~A~~~~L~~~~~~~l~~ 306 (316)
T COG0667 235 ------ELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASK--AEQLEENLAALDIKLSEEELAALDE 306 (316)
T ss_pred ------hhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCC--HHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 11245677789999999999999999999999999999999999999 9999999999999999999999998
Q ss_pred HHhcC
Q 016794 362 VTKKG 366 (382)
Q Consensus 362 ~~~~~ 366 (382)
.....
T Consensus 307 ~~~~~ 311 (316)
T COG0667 307 ISAEE 311 (316)
T ss_pred Hhhhc
Confidence 88654
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.4e-62 Score=456.20 Aligned_cols=314 Identities=25% Similarity=0.383 Sum_probs=264.8
Q ss_pred ceeecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcC--hHHHHHHHHHhhhhhcCCccce
Q 016794 46 SVVKNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYG--PAEDLYGIFINRVRRERPPEFL 123 (382)
Q Consensus 46 ~~l~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG--~sE~~lG~al~~~~~~~~~~~~ 123 (382)
...++|++|++||++|||||.+...+++.++++|.+++++|+|+||||||||++|| .+|+++|++|++.+..|+ .++
T Consensus 13 ~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~-~vv 91 (336)
T KOG1575|consen 13 LRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD-KVV 91 (336)
T ss_pred eeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC-cEE
Confidence 34566999999999999997554333446899999999999999999999999999 499999999999766565 666
Q ss_pred eeEeeecccC-CCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHH
Q 016794 124 DKVRGLTKWV-PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 202 (382)
Q Consensus 124 ~~~~~~tk~~-~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~ 202 (382)
+.+|++...+ +.....+...+...++.||++||++||||||+||+|+..+ +++++++|.+++++|||||||+|+++.+
T Consensus 92 iaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-iee~m~aL~~lve~Gki~yiGlSe~sa~ 170 (336)
T KOG1575|consen 92 IATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-IEETMRALTDLVEQGKIRYWGLSEWSAE 170 (336)
T ss_pred EEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC-HHHHHHHHHHHHhcCceEEEEeccCCHH
Confidence 6666543322 2234678889999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHcC-CCeeeeccccccccCCh-hhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhHHh
Q 016794 203 RLRIILENG-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKY 280 (382)
Q Consensus 203 ~l~~~~~~~-~~~~~~q~~~n~~~~~~-~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (382)
++.++.... +++.++|++||++.|.. +.++++.|++.||++++||||++|+|+++|.... ..+..+.++..+..
T Consensus 171 ~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e-~~~~~~~~~~~~~~--- 246 (336)
T KOG1575|consen 171 EIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGE-DSRNGDKRFQFLGL--- 246 (336)
T ss_pred HHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccc-cccccccccccccc---
Confidence 999998753 67999999999999985 4569999999999999999999999999998652 22333332222111
Q ss_pred HhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHHH
Q 016794 281 KRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQ 360 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l~ 360 (382)
.+++...+.+..+++++.++|+++|+|++|+||+|+++++.++++|||+++ ++||+||++++.+.|+++++.+|+
T Consensus 247 ---~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~--ve~l~eni~Al~~~Lt~e~~~~l~ 321 (336)
T KOG1575|consen 247 ---SPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASK--IEQLKENIGALSVKLTPEEIKELE 321 (336)
T ss_pred ---ccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCc--HHHHHHHHhhhhccCCHHHHHHHH
Confidence 111111156788899999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHhcCCCCC
Q 016794 361 EVTKKGKDLL 370 (382)
Q Consensus 361 ~~~~~~~~~~ 370 (382)
+..+......
T Consensus 322 ~~~~~~~~~~ 331 (336)
T KOG1575|consen 322 EIIDKILGFG 331 (336)
T ss_pred HhhccccCcC
Confidence 9998776543
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=6.7e-60 Score=432.22 Aligned_cols=262 Identities=24% Similarity=0.355 Sum_probs=226.7
Q ss_pred cccceeecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCccc
Q 016794 43 NRTSVVKNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEF 122 (382)
Q Consensus 43 ~~~~~l~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~ 122 (382)
+.++++++|. +||.||||||++++. +.+.+.+.+|++.|+|+||||..|| +|+.+|+++++....|. ++
T Consensus 3 ~~~~~l~~g~---~iP~iGlGt~~~~~~------~~~~~av~~Al~~Gyr~IDTA~~Yg-nE~~VG~aI~~s~v~Re-el 71 (280)
T COG0656 3 KTKVTLNNGV---EIPAIGLGTWQIGDD------EWAVRAVRAALELGYRLIDTAEIYG-NEEEVGEAIKESGVPRE-EL 71 (280)
T ss_pred CceeecCCCC---cccCcceEeeecCCc------hhHHHHHHHHHHhCcceEecHhHhc-CHHHHHHHHHhcCCCHH-He
Confidence 4567887776 699999999999652 3389999999999999999999999 57788999998433332 44
Q ss_pred eeeEeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCC-CCcHHHHHHHHHHHHHcCCccEEeccCCcH
Q 016794 123 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDT 201 (382)
Q Consensus 123 ~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~-~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~ 201 (382)
|++||.|+. ..+++.+.+++++||++||+||+|||+||||.+. ...++|+|++|++++++||||+||||||+.
T Consensus 72 ----FittKvw~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~ 145 (280)
T COG0656 72 ----FITTKVWPS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGV 145 (280)
T ss_pred ----EEEeecCCc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCH
Confidence 457888876 5578999999999999999999999999999763 211689999999999999999999999999
Q ss_pred HHHHHHHHc-CCCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccccccc-cCccccCCCCCCCCCCCCCCCchhHH
Q 016794 202 ERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL-LSEKFLDTNLSIPFAGPPLNTPSLQK 279 (382)
Q Consensus 202 ~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl~~G~-L~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (382)
++++++++. ++.|++||++||++.+..+ ++++|+++||.++|||||+.|. |...
T Consensus 146 ~~L~~l~~~~~~~p~~NQIe~hp~~~q~e--l~~~~~~~gI~v~AysPL~~g~~l~~~---------------------- 201 (280)
T COG0656 146 EHLEELLSLAKVKPAVNQIEYHPYLRQPE--LLPFCQRHGIAVEAYSPLAKGGKLLDN---------------------- 201 (280)
T ss_pred HHHHHHHHhcCCCCceEEEEeccCCCcHH--HHHHHHHcCCEEEEECCcccccccccC----------------------
Confidence 999999985 5779999999999877664 9999999999999999999653 2210
Q ss_pred hHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHH
Q 016794 280 YKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSI 359 (382)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l 359 (382)
+.+.+||++||.|++|++|+|+++++ .++||.+++ ++|++||++++++.||+|||+.|
T Consensus 202 ------------------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~--~~ri~eN~~~~~f~Ls~ed~~~i 259 (280)
T COG0656 202 ------------------PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTT--PERIRENLAAFDFELSEEDMAAI 259 (280)
T ss_pred ------------------hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCC--HHHHHHHHhhhcCCCCHHHHHHH
Confidence 78999999999999999999999999 456777766 99999999999999999999999
Q ss_pred HHHHhcCC
Q 016794 360 QEVTKKGK 367 (382)
Q Consensus 360 ~~~~~~~~ 367 (382)
+++.....
T Consensus 260 ~~l~~~~~ 267 (280)
T COG0656 260 DALDRGYG 267 (280)
T ss_pred HhhccccC
Confidence 99998763
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.3e-57 Score=434.04 Aligned_cols=304 Identities=18% Similarity=0.273 Sum_probs=241.8
Q ss_pred eecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcC--hHHHHHHHHHhhhhhcCCccceee
Q 016794 48 VKNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYG--PAEDLYGIFINRVRRERPPEFLDK 125 (382)
Q Consensus 48 l~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG--~sE~~lG~al~~~~~~~~~~~~~~ 125 (382)
+.+|++|++||+||||||+++|. ..+.+++.++|+.|+++|||+||||+.|| .||++||++|+.....|+ ++++.
T Consensus 2 r~lg~tg~~vs~lglGt~~~~g~--~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~-~~~ia 78 (317)
T TIGR01293 2 RNLGKSGLRVSCLGLGTWVTFGG--QISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRS-SYVIT 78 (317)
T ss_pred cccCCCCCeecceeecCCccCCC--CCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcc-cEEEE
Confidence 35699999999999999975321 35778999999999999999999999997 599999999986422233 66665
Q ss_pred Eeeeccc-CCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHH
Q 016794 126 VRGLTKW-VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 204 (382)
Q Consensus 126 ~~~~tk~-~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l 204 (382)
+|+.... .+...+++++.+++++++||++|||||||+|++|||++..+ .+++|++|++|+++||||+||||||+.+++
T Consensus 79 TK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l 157 (317)
T TIGR01293 79 TKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP-MEETVRAMTYVINQGMAMYWGTSRWSSMEI 157 (317)
T ss_pred eeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Confidence 5543211 01123568999999999999999999999999999998776 899999999999999999999999999998
Q ss_pred HHHHH----cC-CCeeeeccccccccCCh-hhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhH
Q 016794 205 RIILE----NG-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQ 278 (382)
Q Consensus 205 ~~~~~----~~-~~~~~~q~~~n~~~~~~-~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~ 278 (382)
+++.. .+ ++++++|++||++++.. +.+++++|+++||++++|+||++|+|++++.... |. +.+...+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~---~~-~~~~~~~~~~ 233 (317)
T TIGR01293 158 MEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGI---PP-YSRATLKGYQ 233 (317)
T ss_pred HHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCC---CC-cccccccccc
Confidence 77653 22 57889999999998874 6689999999999999999999999999875421 11 1111000000
Q ss_pred HhHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcC--CCCHHHH
Q 016794 279 KYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML--SLDEDDV 356 (382)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~--~L~~e~~ 356 (382)
++.... ..........+++.|+++|+++|+|++|+||+|++++|.|+++|+|+++ ++||++|++++++ +|+++++
T Consensus 234 ~~~~~~-~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~--~~ql~en~~a~~~~~~Ls~e~~ 310 (317)
T TIGR01293 234 WLKDKI-LSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASS--AEQLMENLGSLQVLPKLSSSII 310 (317)
T ss_pred hhhhhh-cchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCC--HHHHHHHHHHhhccCCCCHHHH
Confidence 010000 0000112455678899999999999999999999999999999999999 9999999999987 9999999
Q ss_pred HHHHHH
Q 016794 357 NSIQEV 362 (382)
Q Consensus 357 ~~l~~~ 362 (382)
++|+++
T Consensus 311 ~~l~~~ 316 (317)
T TIGR01293 311 HEIDSI 316 (317)
T ss_pred HHHHhh
Confidence 999875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.9e-57 Score=436.95 Aligned_cols=309 Identities=20% Similarity=0.325 Sum_probs=246.3
Q ss_pred cccccceeecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcCh----HHHHHHHHHhhhh-
Q 016794 41 EDNRTSVVKNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYGP----AEDLYGIFINRVR- 115 (382)
Q Consensus 41 ~~~~~~~l~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~----sE~~lG~al~~~~- 115 (382)
..|++.++ |+||++||+||||||+..|. ..+.+++.++|+.|++.|||+||||+.||+ ||++||++|++..
T Consensus 11 ~~m~~r~l--g~tg~~vs~lglG~~~~~g~--~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~ 86 (346)
T PRK09912 11 GQMQYRYC--GKSGLRLPALSLGLWHNFGH--VNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFA 86 (346)
T ss_pred CCcceeec--CCCCcccccccccCccccCC--CCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhccc
Confidence 34766554 99999999999999973221 235577899999999999999999999983 8999999998631
Q ss_pred hcCCccceeeEeeecccCCC--CCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccE
Q 016794 116 RERPPEFLDKVRGLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT 193 (382)
Q Consensus 116 ~~~~~~~~~~~~~~tk~~~~--~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~ 193 (382)
..|+ ++++++|++...++. ....+++.+++++++||++||+||||+|++|+|++..+ .+++|++|++|+++||||+
T Consensus 87 ~~Rd-~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~GkIr~ 164 (346)
T PRK09912 87 AYRD-ELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-MEETASALAHAVQSGKALY 164 (346)
T ss_pred CCCC-eEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeE
Confidence 1233 677766654322222 12467999999999999999999999999999988776 8999999999999999999
Q ss_pred EeccCCcHHHHHHHHH----cCCCeeeeccccccccCChh-hhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCC
Q 016794 194 VALTNFDTERLRIILE----NGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFA 268 (382)
Q Consensus 194 iGvSn~~~~~l~~~~~----~~~~~~~~q~~~n~~~~~~~-~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~ 268 (382)
||||||+.++++++.+ .+++++++|++||++++..+ .+++++|+++||++++|+||++|+|++++.... |.
T Consensus 165 iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~---~~- 240 (346)
T PRK09912 165 VGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGI---PQ- 240 (346)
T ss_pred EEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCCC---CC-
Confidence 9999999999876654 25678999999999998755 479999999999999999999999999875431 11
Q ss_pred CCCCCC--chhHHhHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhh
Q 016794 269 GPPLNT--PSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAI 346 (382)
Q Consensus 269 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~ 346 (382)
+.+... .....+. +.+. .+....+++.++++|+++|+|++|+||+|++++|.|+++|||+++ ++||++|+++
T Consensus 241 ~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~--~~ql~en~~a 314 (346)
T PRK09912 241 DSRMHREGNKVRGLT---PKML-TEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASR--AEQLEENVQA 314 (346)
T ss_pred Cccccccccchhhhc---hhhc-cHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCC--HHHHHHHHhh
Confidence 111100 0000010 0000 123455678999999999999999999999999999999999999 9999999999
Q ss_pred h-cCCCCHHHHHHHHHHHhc
Q 016794 347 F-MLSLDEDDVNSIQEVTKK 365 (382)
Q Consensus 347 ~-~~~L~~e~~~~l~~~~~~ 365 (382)
+ .++|+++++++|+++.++
T Consensus 315 ~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 315 LNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred hcCCCCCHHHHHHHHHhhCc
Confidence 8 489999999999998865
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3.2e-56 Score=431.06 Aligned_cols=303 Identities=21% Similarity=0.323 Sum_probs=242.7
Q ss_pred cccceeecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcC---------hHHHHHHHHHhh
Q 016794 43 NRTSVVKNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYG---------PAEDLYGIFINR 113 (382)
Q Consensus 43 ~~~~~l~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG---------~sE~~lG~al~~ 113 (382)
|++. .+|+||++||+||||||++|+ ..+.+++.++|+.|++.|||+||||+.|| .||+++|++|+.
T Consensus 1 m~~r--~lg~t~~~vs~iglGt~~~g~---~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~ 75 (346)
T PRK10625 1 MQYH--RIPHSSLEVSTLGLGTMTFGE---QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAK 75 (346)
T ss_pred CCce--ecCCCCCccccEeEeccccCC---CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhh
Confidence 4444 459999999999999999864 34678999999999999999999999995 499999999985
Q ss_pred hhhcCCccceeeEeeeccc-C-----CCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCC----------------
Q 016794 114 VRRERPPEFLDKVRGLTKW-V-----PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------- 171 (382)
Q Consensus 114 ~~~~~~~~~~~~~~~~tk~-~-----~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~---------------- 171 (382)
.. .|+ ++++++|+.... . ....+++++.+++++++||++||+||||||++|||+..
T Consensus 76 ~~-~R~-~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 153 (346)
T PRK10625 76 RG-SRE-KLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAP 153 (346)
T ss_pred cC-Ccc-eEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccC
Confidence 32 122 555554442110 0 00124689999999999999999999999999999652
Q ss_pred -CCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHH----cCC-CeeeeccccccccCChhhhHHHHHHHhCCcEEE
Q 016794 172 -NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGI-PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 172 -~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~----~~~-~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via 245 (382)
.+ ++++|++|++|+++||||+||||||+.++++++.. .+. .+.++|++||++++..+.+++++|+++||++++
T Consensus 154 ~~~-~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via 232 (346)
T PRK10625 154 AVS-LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLA 232 (346)
T ss_pred CCC-HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEE
Confidence 23 78999999999999999999999999998877653 233 488899999999988777899999999999999
Q ss_pred cccccccccCccccCCCCCCCCCCCCCCCchhHHhHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCc
Q 016794 246 YGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAV 325 (382)
Q Consensus 246 ~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v 325 (382)
|+||++|+|++++.... .|. +.+.. .+.+|.. ...+....+++.++++|+++|+|++|+||+|++++|.|
T Consensus 233 ~spL~~G~Ltg~~~~~~--~~~-~~~~~--~~~~~~~-----~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v 302 (346)
T PRK10625 233 YSCLAFGTLTGKYLNGA--KPA-GARNT--LFSRFTR-----YSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFV 302 (346)
T ss_pred eccccCeeccCCCCCCC--CCC-Ccccc--ccccccc-----ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCC
Confidence 99999999999875321 111 11100 0001100 01123456678999999999999999999999999999
Q ss_pred eeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHHHHHHhc
Q 016794 326 AGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 365 (382)
Q Consensus 326 ~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l~~~~~~ 365 (382)
+++|+|+++ ++||++|+++++++|++++++.|+++...
T Consensus 303 ~~~I~G~~~--~~~l~en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 303 ASTLLGATT--MEQLKTNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred eeEEeCCCC--HHHHHHHHhhccCCCCHHHHHHHHHHHhh
Confidence 999999999 99999999999999999999999999853
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.3e-55 Score=419.74 Aligned_cols=287 Identities=18% Similarity=0.299 Sum_probs=236.9
Q ss_pred ecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcCh--HHHHHHHHHhhhhhcCCccceeeE
Q 016794 49 KNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYGP--AEDLYGIFINRVRRERPPEFLDKV 126 (382)
Q Consensus 49 ~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~--sE~~lG~al~~~~~~~~~~~~~~~ 126 (382)
.+|+||++||.||||||++|+.|+..+.+++.++|+.|++.|||+||||+.||. ||+++|++|++.+..|+ ++++++
T Consensus 3 ~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~-~v~I~T 81 (314)
T PLN02587 3 ELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPRE-KYVVST 81 (314)
T ss_pred cCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcc-eEEEEe
Confidence 469999999999999999987787788899999999999999999999999976 99999999987432333 555544
Q ss_pred eeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCC--CcHHHHHHHHHHHHHcCCccEEeccCCcHHHH
Q 016794 127 RGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN--PGYLDALNHLTDLKEEGKIKTVALTNFDTERL 204 (382)
Q Consensus 127 ~~~tk~~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~--~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l 204 (382)
|+.. .+...+++++.+++++++||++||+||||+|+||+|+... ..++++|++|++|+++||||+||||||+.+++
T Consensus 82 K~~~--~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~ 159 (314)
T PLN02587 82 KCGR--YGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIF 159 (314)
T ss_pred cccc--CCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHH
Confidence 4321 1112357899999999999999999999999999997532 12578999999999999999999999999988
Q ss_pred HHHHHc---C-CCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhHHh
Q 016794 205 RIILEN---G-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKY 280 (382)
Q Consensus 205 ~~~~~~---~-~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (382)
+.+.+. + +.+..+|+.||++++.. .+++++|+++||++++|+||++|+|+++.... .. +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~--------~~---~----- 222 (314)
T PLN02587 160 TYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE--------WH---P----- 222 (314)
T ss_pred HHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC--------CC---C-----
Confidence 776652 2 34555788999876543 48999999999999999999999999863210 00 0
Q ss_pred HhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhc----CCCCHHHH
Q 016794 281 KRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM----LSLDEDDV 356 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~----~~L~~e~~ 356 (382)
..+....+++.++++|+++++|++|+||+|++++|.|+++|+|+++ ++||++|++++. .+|+++++
T Consensus 223 --------~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~--~~~l~~nl~a~~~~~~~~l~~~~~ 292 (314)
T PLN02587 223 --------APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNS--VQQVEENVAAATELETSGIDEELL 292 (314)
T ss_pred --------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCC--HHHHHHHHHHHhhcccCCCCHHHH
Confidence 0123445668899999999999999999999999999999999999 999999999975 37999999
Q ss_pred HHHHHHHhc
Q 016794 357 NSIQEVTKK 365 (382)
Q Consensus 357 ~~l~~~~~~ 365 (382)
++|+++...
T Consensus 293 ~~l~~~~~~ 301 (314)
T PLN02587 293 SEVEAILAP 301 (314)
T ss_pred HHHHHhhcc
Confidence 999998864
No 8
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=7.9e-54 Score=399.85 Aligned_cols=250 Identities=18% Similarity=0.285 Sum_probs=216.0
Q ss_pred ccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCccceeeEeeecccCCC
Q 016794 56 DICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP 135 (382)
Q Consensus 56 ~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~ 135 (382)
+||.||||||+++ .+++.++|+.|++.|||+||||+.||+ |+.+|++|++....|+ ++++ .||.++.
T Consensus 2 ~vs~lglGt~~~~-------~~~~~~~i~~A~~~Gi~~~DTA~~Yg~-E~~lG~al~~~~~~R~-~v~i----~TK~~~~ 68 (267)
T PRK11172 2 SIPAFGLGTFRLK-------DQVVIDSVKTALELGYRAIDTAQIYDN-EAAVGQAIAESGVPRD-ELFI----TTKIWID 68 (267)
T ss_pred CCCCEeeEccccC-------hHHHHHHHHHHHHcCCCEEEccchhCC-HHHHHHHHHHcCCChh-HeEE----EEEeCCC
Confidence 6999999999874 367999999999999999999999994 9999999985322222 5555 4554433
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCC--CCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHc-CC
Q 016794 136 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS--NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI 212 (382)
Q Consensus 136 ~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~--~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~-~~ 212 (382)
..+++.+++++++||+|||+||||+|++|+|++. .+ .+++|++|++|+++||||+||||||+.++++++.+. +.
T Consensus 69 --~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~-~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~ 145 (267)
T PRK11172 69 --NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVS-VEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGA 145 (267)
T ss_pred --CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCC-HHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999764 33 789999999999999999999999999999988864 32
Q ss_pred -CeeeeccccccccCChhhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhHHhHhhhhccCCch
Q 016794 213 -PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWS 291 (382)
Q Consensus 213 -~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (382)
+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 146 ~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~---------------------------------- 189 (267)
T PRK11172 146 ENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD---------------------------------- 189 (267)
T ss_pred CCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC----------------------------------
Confidence 689999999998764 5899999999999999999999864320
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHHHHHHhcCC
Q 016794 292 QFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 367 (382)
Q Consensus 292 ~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l~~~~~~~~ 367 (382)
+.++++|+++|+|++|+||+|+++++. ++|+|+++ ++||++|+++++++|+++++++|+++....+
T Consensus 190 ------~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~--~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 190 ------PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTK--RENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred ------HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCC--HHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 468899999999999999999999973 58999998 9999999999999999999999999986644
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=5.3e-54 Score=393.22 Aligned_cols=267 Identities=20% Similarity=0.336 Sum_probs=224.2
Q ss_pred cceeecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCcccee
Q 016794 45 TSVVKNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLD 124 (382)
Q Consensus 45 ~~~l~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~ 124 (382)
+++|++|. +||.||||||+. +.+++.+++..|++.|+||||||..|||.++ +|++|++.-.+.. ..+.
T Consensus 6 ~~~Ln~G~---~mP~iGlGTw~~-------~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~e-vG~aik~~i~~~~-v~Re 73 (300)
T KOG1577|consen 6 TVKLNNGF---KMPIIGLGTWQS-------PPGQVAEAVKAAIKAGYRHIDTAHVYGNEKE-VGEAIKELLAEGG-VKRE 73 (300)
T ss_pred eEeccCCC---ccceeeeEeccc-------ChhhHHHHHHHHHHhCcceeechhhhCChHH-HHHHHHHHhhhCC-cchh
Confidence 67888886 999999999984 4678999999999999999999999999554 7999997532221 2223
Q ss_pred eEeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCC---------------CCcHHHHHHHHHHHHHcC
Q 016794 125 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------NPGYLDALNHLTDLKEEG 189 (382)
Q Consensus 125 ~~~~~tk~~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~---------------~~~~~e~~~aL~~l~~~G 189 (382)
.+|++||+|+. ...++.++.++++||++||+||+|||++|||-.. ..+..++|++||+++++|
T Consensus 74 diFiTSKlw~~--~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~G 151 (300)
T KOG1577|consen 74 DIFITSKLWPT--DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEG 151 (300)
T ss_pred hheeeeccCcc--ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcC
Confidence 45668888876 4689999999999999999999999999999653 123678999999999999
Q ss_pred CccEEeccCCcHHHHHHHHHc-CCCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCC
Q 016794 190 KIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFA 268 (382)
Q Consensus 190 kir~iGvSn~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~ 268 (382)
++|+||||||+..++++++.. .++|.++|+++++. ..+..++++|+++||.+.|||||+++.- ++
T Consensus 152 l~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~--~~Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~----------- 217 (300)
T KOG1577|consen 152 LVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPY--LQQKKLVEFCKSKGIVVTAYSPLGSPGR-GS----------- 217 (300)
T ss_pred CceEeeeecCCHHHHHHHHhcCCCCCccceeeccCC--cChHHHHHHHhhCCcEEEEecCCCCCCC-cc-----------
Confidence 999999999999999999985 47899999999994 4556899999999999999999998631 00
Q ss_pred CCCCCCchhHHhHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhc
Q 016794 269 GPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM 348 (382)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~ 348 (382)
.. .. .+.+.+||++||.|++|++|||.++++.+ |||-+.+ ++||+||+..++
T Consensus 218 -~l---------------------l~--~~~l~~iA~K~~kt~aQIlLrw~~q~g~~--vipKS~~--~~Ri~eN~~vfd 269 (300)
T KOG1577|consen 218 -DL---------------------LE--DPVLKEIAKKYNKTPAQILLRWALQRGVS--VIPKSSN--PERIKENFKVFD 269 (300)
T ss_pred -cc---------------------cc--CHHHHHHHHHhCCCHHHHHHHHHHhCCcE--EEeccCC--HHHHHHHHhhcc
Confidence 00 00 17899999999999999999999999864 4555544 999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCC
Q 016794 349 LSLDEDDVNSIQEVTKKGK 367 (382)
Q Consensus 349 ~~L~~e~~~~l~~~~~~~~ 367 (382)
+.||++|++.|++.....|
T Consensus 270 f~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 270 FELTEEDMKKLDSLNSNER 288 (300)
T ss_pred ccCCHHHHHHHhhccccce
Confidence 9999999999998776654
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=3.8e-53 Score=399.40 Aligned_cols=278 Identities=30% Similarity=0.536 Sum_probs=239.7
Q ss_pred ecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcCh--HHHHHHHHHhhhh-hcCCccceee
Q 016794 49 KNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYGP--AEDLYGIFINRVR-RERPPEFLDK 125 (382)
Q Consensus 49 ~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~--sE~~lG~al~~~~-~~~~~~~~~~ 125 (382)
.+|+||++||+||||||.++..| .+.+++.++|+.|++.|||+||||+.||. ||+.+|++|++.+ |+ +++++
T Consensus 3 ~lg~tg~~vs~lg~G~~~~~~~~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~---~~~i~ 77 (285)
T cd06660 3 TLGKTGLKVSRLGLGTWQLGGGY--VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPRE---EVFIA 77 (285)
T ss_pred ccCCCCceecCcceeccccCCCC--CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcC---cEEEE
Confidence 45889999999999999987655 57889999999999999999999999987 9999999999865 43 56665
Q ss_pred EeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHH
Q 016794 126 VRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLR 205 (382)
Q Consensus 126 ~~~~tk~~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~ 205 (382)
+|+...... ..+++++.+++++++||++||+||||+|+||+|+.......++|++|++++++|+||+||||||+.+.+.
T Consensus 78 tK~~~~~~~-~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~ 156 (285)
T cd06660 78 TKVGPRPGD-GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLE 156 (285)
T ss_pred eeecCCCCC-CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHH
Confidence 544322111 1347899999999999999999999999999998766557899999999999999999999999999999
Q ss_pred HHHHcC-CCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhHHhHhhh
Q 016794 206 IILENG-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMV 284 (382)
Q Consensus 206 ~~~~~~-~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (382)
++.+.. .+|+++|++||++++..+.+++++|+++||++++|+||++|.|+++...... . +
T Consensus 157 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~--------~--~--------- 217 (285)
T cd06660 157 EALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAP--------P--P--------- 217 (285)
T ss_pred HHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCC--------C--C---------
Confidence 998753 5899999999999988777899999999999999999999999875432110 0 0
Q ss_pred hccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHHHH
Q 016794 285 DAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 361 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l~~ 361 (382)
.......+..++.++++|++|+||+|++++|.++++|+|+++ ++||++|+++..++|++++++.|++
T Consensus 218 --------~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~--~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 218 --------EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASS--PERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred --------hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCC--HHHHHHHHhhccCCCCHHHHHHHhh
Confidence 001347899999999999999999999999999999999999 9999999999999999999999975
No 11
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=7.1e-54 Score=404.26 Aligned_cols=268 Identities=17% Similarity=0.141 Sum_probs=221.5
Q ss_pred ccccccccccccccCCC-------CCCCChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCccceeeE
Q 016794 54 MLDICRVVNGMWQTSGG-------WGKIDINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLDKV 126 (382)
Q Consensus 54 g~~vs~lglGt~~~~~~-------~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~ 126 (382)
+++||+||||||++|+. ||.++.+++.++|+.|++.|||+||||+.||.||+++|++|++..+. .++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~~~~---~~~--- 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRPVPF---RVT--- 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccCCce---Eee---
Confidence 46899999999999853 57789999999999999999999999999999999999999741111 232
Q ss_pred eeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCC-CCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHH
Q 016794 127 RGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLR 205 (382)
Q Consensus 127 ~~~tk~~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~-~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~ 205 (382)
+.+|.. +.+++.+++++++||+|||+||||+|++|+|++. .+..+++|++|++|+++||||+||||||+++++.
T Consensus 76 -i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~ 150 (292)
T PRK14863 76 -LSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPV 150 (292)
T ss_pred -cccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHH
Confidence 334421 3468999999999999999999999999999763 3323689999999999999999999999999988
Q ss_pred HHHHcCCCeeeeccccccccCChh-hhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhHHhHhhh
Q 016794 206 IILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMV 284 (382)
Q Consensus 206 ~~~~~~~~~~~~q~~~n~~~~~~~-~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (382)
.+... .+|+++|++||++++..+ .+++++|+++||++++|+||++|+|++.... .. .. +
T Consensus 151 ~~~~~-~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~-----------~~-~~---~---- 210 (292)
T PRK14863 151 GVARR-FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDR-----------VP-AQ---L---- 210 (292)
T ss_pred HHHhc-CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCccc-----------Cc-cc---h----
Confidence 87654 579999999999998764 4699999999999999999999999652110 00 00 0
Q ss_pred hccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHHH
Q 016794 285 DAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQ 360 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l~ 360 (382)
......+..+.+++.++++|++|+||+|++++|.|+++|+|+++ ++||++|+++.+.+++++.+++|.
T Consensus 211 ------~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~--~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 211 ------KGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNS--AAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred ------hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCC--HHHHHHHHHHHhcCCCccchhhcc
Confidence 01123346677788888999999999999999999999999999 999999999999899998877654
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.8e-53 Score=401.19 Aligned_cols=277 Identities=27% Similarity=0.500 Sum_probs=228.5
Q ss_pred cccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCc--ChHHHHHHHHHhh--hhhcCCccceeeEeeecccCC
Q 016794 59 RVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIY--GPAEDLYGIFINR--VRRERPPEFLDKVRGLTKWVP 134 (382)
Q Consensus 59 ~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~Y--G~sE~~lG~al~~--~~~~~~~~~~~~~~~~tk~~~ 134 (382)
+||||||++++. ..+.+++.++|+.|++.|||+||||+.| |.+|++||++|++ .+|+ ++++.+|+. ....
T Consensus 1 ~l~lG~~~~~~~--~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~---~~~i~tK~~-~~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGE--RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRD---DIFISTKVY-GDGK 74 (283)
T ss_dssp SBEEECTTBTTT--TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGG---GSEEEEEEE-SSSS
T ss_pred CEEEEccccCCC--CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccc---ccccccccc-cccc
Confidence 589999999754 6789999999999999999999999999 6799999999998 3444 677766651 1122
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHc-CCC
Q 016794 135 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIP 213 (382)
Q Consensus 135 ~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~-~~~ 213 (382)
....++++.+++++++||++||+||||+|++|+|+......+++|++|++|+++|+||+||||||+.+.++++... ..+
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 154 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIP 154 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-
T ss_pred ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 2346799999999999999999999999999999987766899999999999999999999999999999999554 367
Q ss_pred eeeeccccccccCChhhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhHHhHhhhhccCCchhH
Q 016794 214 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQF 293 (382)
Q Consensus 214 ~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (382)
|+++|++||++++....+++++|+++||++++|+||++|+|++++.......+.... ...
T Consensus 155 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~--------------------~~~ 214 (283)
T PF00248_consen 155 PDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL--------------------RDA 214 (283)
T ss_dssp ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS--------------------STH
T ss_pred ccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc--------------------chh
Confidence 999999999997778889999999999999999999999999887654322111000 012
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHHHHHH
Q 016794 294 QVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 363 (382)
Q Consensus 294 ~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l~~~~ 363 (382)
....+.+.++++++|+|++|+||+|+++++.+.++|+|+++ ++|+++|+++++++||++++++|+++.
T Consensus 215 ~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~--~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 215 QELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASS--PEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp GGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SS--HHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCC--HHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 33458999999999999999999999999999999999999 999999999999999999999999875
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-52 Score=394.29 Aligned_cols=264 Identities=16% Similarity=0.234 Sum_probs=221.7
Q ss_pred ccccccccccccccCC--CCCC-CChHHHHHHHHHHHHcCCcEEeCCCCcCh--HHHHHHHHHhhhhhcCCccceeeEee
Q 016794 54 MLDICRVVNGMWQTSG--GWGK-IDINNAVNAMLHYVDAGLTTFDMADIYGP--AEDLYGIFINRVRRERPPEFLDKVRG 128 (382)
Q Consensus 54 g~~vs~lglGt~~~~~--~~~~-~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~--sE~~lG~al~~~~~~~~~~~~~~~~~ 128 (382)
|++||+||||||++|+ .||. .+.+++.++|+.|++.|||+||||+.||+ +|+++|++++. .|+ ++++++|+
T Consensus 14 g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~---~~~i~TK~ 89 (290)
T PRK10376 14 GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPD---DLTIVTKV 89 (290)
T ss_pred CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCC---eEEEEeee
Confidence 6799999999999975 3664 46788999999999999999999999976 89999999964 233 56665554
Q ss_pred ecccCC---CCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCC----CCCcHHHHHHHHHHHHHcCCccEEeccCCcH
Q 016794 129 LTKWVP---PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEEGKIKTVALTNFDT 201 (382)
Q Consensus 129 ~tk~~~---~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~----~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~ 201 (382)
...... .....+++.+++++++||+||||||||+|++|+++. .....+++|++|++|+++||||+||||||+.
T Consensus 90 g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 169 (290)
T PRK10376 90 GARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTP 169 (290)
T ss_pred cccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCH
Confidence 321110 123568999999999999999999999999988521 1123789999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhHHhH
Q 016794 202 ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYK 281 (382)
Q Consensus 202 ~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (382)
++++++.+. .+++++|++||++++.. .+++++|+++||++++|+||+++...
T Consensus 170 ~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~~-------------------------- 221 (290)
T PRK10376 170 TQVAEARKI-AEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTPL-------------------------- 221 (290)
T ss_pred HHHHHHHhh-CCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCChh--------------------------
Confidence 999998875 36899999999998764 57999999999999999999743100
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHHHH
Q 016794 282 RMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 361 (382)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l~~ 361 (382)
..+.++++|+++|+|++|+||+|+++++.++++|+|+++ ++|+++|+++++++|++++++.|++
T Consensus 222 --------------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~--~~~l~en~~a~~~~L~~e~~~~l~~ 285 (290)
T PRK10376 222 --------------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSS--VAHLRENLAAAELVLSEEVLAELDG 285 (290)
T ss_pred --------------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCC--HHHHHHHHhhccCCCCHHHHHHHHH
Confidence 016789999999999999999999999777789999999 9999999999999999999999999
Q ss_pred HHhc
Q 016794 362 VTKK 365 (382)
Q Consensus 362 ~~~~ 365 (382)
+.+.
T Consensus 286 ~~~~ 289 (290)
T PRK10376 286 IARE 289 (290)
T ss_pred HHhc
Confidence 8653
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.6e-51 Score=385.67 Aligned_cols=259 Identities=19% Similarity=0.334 Sum_probs=218.8
Q ss_pred cceeecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCcccee
Q 016794 45 TSVVKNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLD 124 (382)
Q Consensus 45 ~~~l~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~ 124 (382)
+++++ +|++||.||||||++ +.+++.++|+.|++.|||+||||+.|| +|+.+|++|+..+..|+ ++++
T Consensus 6 ~~~l~---~g~~v~~lglG~~~~-------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R~-~~~i 73 (275)
T PRK11565 6 VIKLQ---DGNVMPQLGLGVWQA-------SNEEVITAIHKALEVGYRSIDTAAIYK-NEEGVGKALKEASVARE-ELFI 73 (275)
T ss_pred eEEcC---CCCccCCcceECccC-------CHHHHHHHHHHHHHhCCCEEEchhhhC-CHHHHHHHHHHcCCCHH-HEEE
Confidence 35554 457999999999986 357899999999999999999999999 58889999986432222 5555
Q ss_pred eEeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHH
Q 016794 125 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 204 (382)
Q Consensus 125 ~~~~~tk~~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l 204 (382)
.||.++. +++.+++++++||++||+||||+|++|+|++..+...++|++|++|+++||||+||||||+.+++
T Consensus 74 ----~tK~~~~----~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 145 (275)
T PRK11565 74 ----TTKLWND----DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHL 145 (275)
T ss_pred ----EEEecCc----chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHH
Confidence 4444332 56899999999999999999999999999875444789999999999999999999999999999
Q ss_pred HHHHH-cCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhHHhHhh
Q 016794 205 RIILE-NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRM 283 (382)
Q Consensus 205 ~~~~~-~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (382)
+++.. .++.+.++|++||++.+. .+++++|+++||++++|+||++|.- . .+.
T Consensus 146 ~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~--------------~~~---------- 198 (275)
T PRK11565 146 QRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G--------------VFD---------- 198 (275)
T ss_pred HHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c--------------ccc----------
Confidence 99875 456789999999998763 5799999999999999999997731 0 000
Q ss_pred hhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHHHHHH
Q 016794 284 VDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 363 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l~~~~ 363 (382)
.+.|.++|+++|+|++|+||+|+++++. ++|||+++ ++|+++|+++++++|+++++++|+++.
T Consensus 199 -------------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~--~~~i~~n~~a~~~~Ls~~~~~~i~~~~ 261 (275)
T PRK11565 199 -------------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVT--PSRIAENFDVFDFRLDKDELGEIAKLD 261 (275)
T ss_pred -------------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCC--HHHHHHHHhccCCCcCHHHHHHHHhhc
Confidence 1678899999999999999999999975 48999998 999999999999999999999999998
Q ss_pred hcCC
Q 016794 364 KKGK 367 (382)
Q Consensus 364 ~~~~ 367 (382)
...+
T Consensus 262 ~~~~ 265 (275)
T PRK11565 262 QGKR 265 (275)
T ss_pred ccCC
Confidence 6554
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.8e-49 Score=348.26 Aligned_cols=283 Identities=24% Similarity=0.361 Sum_probs=240.4
Q ss_pred cccceeecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEeCCCCcCh--HHHHHHHHHhhhhhcCCc
Q 016794 43 NRTSVVKNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFDMADIYGP--AEDLYGIFINRVRRERPP 120 (382)
Q Consensus 43 ~~~~~l~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~--sE~~lG~al~~~~~~~~~ 120 (382)
|.++++ |..|+++|++.+|+|++. .|+ ++.++....|..|++.|||+||-|+.||. +|.++|.+|+-.+.-|+
T Consensus 1 m~rI~l--~~~~~e~Sriv~G~wRl~-d~~-~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRe- 75 (298)
T COG4989 1 MQRITL--APDGLEFSRIVLGYWRLN-DWN-MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLRE- 75 (298)
T ss_pred CceEEe--cCCCccHHHHHHHHHhhh-hcc-CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhh-
Confidence 456666 778899999999999995 344 45689999999999999999999999986 99999999987553333
Q ss_pred cceeeEeeecccC----C--CCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEE
Q 016794 121 EFLDKVRGLTKWV----P--PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 194 (382)
Q Consensus 121 ~~~~~~~~~tk~~----~--~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~i 194 (382)
.+.+.+|++-+.. + ..++++.++|.+++|+||++|+|||+|+++||+||+--+ .+|+.+|+..|++.||||++
T Consensus 76 kieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr~f 154 (298)
T COG4989 76 KIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMD-AEEVAEAFTHLHKSGKVRHF 154 (298)
T ss_pred heEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCC-HHHHHHHHHHHHhcCCeeee
Confidence 3434333322211 1 246889999999999999999999999999999999766 79999999999999999999
Q ss_pred eccCCcHHHHHHHHHc-CCCeeeeccccccccCC-hhhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCC
Q 016794 195 ALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPL 272 (382)
Q Consensus 195 GvSn~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~-~~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~ 272 (382)
|||||++.+++-+... ..++++||+++|+++.. ..++.+++|+.+.|.+++||||++|.+...
T Consensus 155 GVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g--------------- 219 (298)
T COG4989 155 GVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG--------------- 219 (298)
T ss_pred ecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC---------------
Confidence 9999999999887763 34689999999998654 346799999999999999999999854321
Q ss_pred CCchhHHhHhhhhccCCchhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCC
Q 016794 273 NTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG-VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSL 351 (382)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g-~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L 351 (382)
.++++++.++|..+|.++| .|..+++++|++.+|.-.-+|+|+.+ +++|++.++++++.|
T Consensus 220 -----------------~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~--~eRi~~a~~Al~~~L 280 (298)
T COG4989 220 -----------------DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGN--LERIRAAIKALSLTL 280 (298)
T ss_pred -----------------CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCC--HHHHHHHHHHhhccc
Confidence 1356777899999999999 79999999999999999999999988 999999999999999
Q ss_pred CHHHHHHHHHHHhc
Q 016794 352 DEDDVNSIQEVTKK 365 (382)
Q Consensus 352 ~~e~~~~l~~~~~~ 365 (382)
|.++|-+|..+...
T Consensus 281 tRqqWf~Iy~Aa~G 294 (298)
T COG4989 281 TRQQWFEIYTAAIG 294 (298)
T ss_pred cHHHHHHHHHHhcc
Confidence 99999999988743
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=3.7e-46 Score=344.75 Aligned_cols=284 Identities=20% Similarity=0.242 Sum_probs=235.9
Q ss_pred cccceeecCCcccccccccccccccCCCC-CCCChHHHHHHHHHHHHcCCcEEeCCCCc--ChHHHHHHHHHhhhhhcCC
Q 016794 43 NRTSVVKNGNDMLDICRVVNGMWQTSGGW-GKIDINNAVNAMLHYVDAGLTTFDMADIY--GPAEDLYGIFINRVRRERP 119 (382)
Q Consensus 43 ~~~~~l~~G~tg~~vs~lglGt~~~~~~~-~~~~~~~~~~~l~~A~~~Gi~~fDTA~~Y--G~sE~~lG~al~~~~~~~~ 119 (382)
|.|+++ |++|.++|.+|||||++...| +..|.+.+.++|++|++.|||+||||..| |.||..+|+||++..|+
T Consensus 1 Mlyr~~--~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Re-- 76 (391)
T COG1453 1 MLYRKF--PKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYRE-- 76 (391)
T ss_pred Cchhhc--CCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccc--
Confidence 344444 999999999999999997554 45788999999999999999999999999 99999999999976554
Q ss_pred ccceeeEeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCc-H--HHHHHHHHHHHHcCCccEEec
Q 016794 120 PEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG-Y--LDALNHLTDLKEEGKIKTVAL 196 (382)
Q Consensus 120 ~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~-~--~e~~~aL~~l~~~Gkir~iGv 196 (382)
++++.||+..+. --+++.+++-++++|++||+||+|+|+||......-. . ...++++++++++||||++|+
T Consensus 77 -----kv~LaTKlp~~~-~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GF 150 (391)
T COG1453 77 -----KVKLATKLPSWP-VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGF 150 (391)
T ss_pred -----eEEEEeecCCcc-ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeee
Confidence 556677765332 2377899999999999999999999999998763210 1 137899999999999999999
Q ss_pred cCCcH-HHHHHHHHcCCCeeeeccccccccCChh--hhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCC
Q 016794 197 TNFDT-ERLRIILENGIPVVSNQVQHSVVDMRPQ--QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLN 273 (382)
Q Consensus 197 Sn~~~-~~l~~~~~~~~~~~~~q~~~n~~~~~~~--~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~ 273 (382)
|.|+. +.+.+++.. .+++++|++||.++.+.. .+.+++|.++|++|+.++|+.+|-|..++.
T Consensus 151 SfHgs~e~~~~iv~a-~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP-------------- 215 (391)
T COG1453 151 SFHGSTEVFKEIVDA-YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVP-------------- 215 (391)
T ss_pred cCCCCHHHHHHHHhc-CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCC--------------
Confidence 99975 566777765 479999999999988765 388999999999999999999998766421
Q ss_pred CchhHHhHhhhhccCCchhHHHHHHHHHHHHHHcC--CCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcC--
Q 016794 274 TPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG--VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML-- 349 (382)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g--~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~-- 349 (382)
+++.+++++++ .||+..|+||++++|.|+++++||++ ++|++||+..++.
T Consensus 216 ------------------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~--~~~l~enLk~~~~~~ 269 (391)
T COG1453 216 ------------------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNT--PEQLEENLKIASELE 269 (391)
T ss_pred ------------------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCC--HHHHHHHHHHHhhcC
Confidence 67888888876 58999999999999999999999999 9999999998753
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCC-CcCCcc
Q 016794 350 -SLDEDDVNSIQEVTKKGKDLLG-VIGDCG 377 (382)
Q Consensus 350 -~L~~e~~~~l~~~~~~~~~~~~-~~~~~~ 377 (382)
+||++|++.|.++.+.++.... +|..|.
T Consensus 270 p~lte~e~~il~~v~~~~~~~~~v~Ct~C~ 299 (391)
T COG1453 270 PSLTEEELQILEKVEEIYRESLKVPCTGCR 299 (391)
T ss_pred CccCHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4999999988888876655432 455553
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.5e-44 Score=319.29 Aligned_cols=311 Identities=19% Similarity=0.279 Sum_probs=245.7
Q ss_pred cccccccccccccccCCCCcccccccccccceeecCCcccccccccccccccCCCCCCCChHHHHHHHHHHHHcCCcEEe
Q 016794 16 SVKLKSIRGSRTQKTNSKSFCCVLTEDNRTSVVKNGNDMLDICRVVNGMWQTSGGWGKIDINNAVNAMLHYVDAGLTTFD 95 (382)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~fD 95 (382)
|++.+.+.+.|..... -.|++.. +|.||++||+||||...+++.||..+.++....|..|+..|||+||
T Consensus 4 slp~t~v~~fhde~~v---------rrmeyR~--lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiD 72 (342)
T KOG1576|consen 4 SLPATYVKGFHDEEKV---------RRMEYRQ--LGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYID 72 (342)
T ss_pred cCcchhccccCcHHHH---------HHHHHhh--cCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHcccccee
Confidence 4555666666665111 1344444 4999999999999999999889988888888888889999999999
Q ss_pred CCCCcCh--HHHHHHHHHhhhhhcCCccceeeEeeec-ccCC-CCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCC
Q 016794 96 MADIYGP--AEDLYGIFINRVRRERPPEFLDKVRGLT-KWVP-PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS 171 (382)
Q Consensus 96 TA~~YG~--sE~~lG~al~~~~~~~~~~~~~~~~~~t-k~~~-~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~ 171 (382)
||+.||. ||..+|.+++++||+ .+++.+|++. +..+ .-++++++.+++++++||+||++||+|++++|..+..
T Consensus 73 Tsp~Ygqs~se~~lg~al~~vPR~---aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefa 149 (342)
T KOG1576|consen 73 TSPYYGQSRSEEGLGLALKDVPRE---AYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFA 149 (342)
T ss_pred cCcccCcchhHHHHHHHHhhCChh---heeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccc
Confidence 9999986 899999999999998 6677666542 1221 1258999999999999999999999999999998754
Q ss_pred ---CCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcC-CCeeeec--cccccccCChhhhHHHHHHHhCCcEEE
Q 016794 172 ---NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG-IPVVSNQ--VQHSVVDMRPQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 172 ---~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~-~~~~~~q--~~~n~~~~~~~~~~l~~~~~~gi~via 245 (382)
++.+-|++.+|++|+++||||+|||+.+..+.+.++.+.+ -..+++- ..|++.+.. .-..+++.+..|++|+.
T Consensus 150 p~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~ 228 (342)
T KOG1576|consen 150 PNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVIN 228 (342)
T ss_pred ccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEe
Confidence 2336799999999999999999999999999999998754 2355544 677775433 23678888999999999
Q ss_pred cccccccccCccccCCCCCCCCCCCCCCCchhHHhHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCc
Q 016794 246 YGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAV 325 (382)
Q Consensus 246 ~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v 325 (382)
-++++.|+|+.. +++.++|.-. ...+...+-.++|++.|+..+.+|+.|.++.+.+
T Consensus 229 AsalsmgLLt~~-----------gp~~wHPaS~-------------Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~ 284 (342)
T KOG1576|consen 229 ASALSMGLLTNQ-----------GPPPWHPASD-------------ELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGV 284 (342)
T ss_pred hhhHHHHHhhcC-----------CCCCCCCCCH-------------HHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCc
Confidence 999999999873 4444555322 2333446777899999999999999999999999
Q ss_pred eeEeeCCCCCcHhHHHHHhhhhcCCCCH----HHHHHHHHHHhcCC
Q 016794 326 AGSMIGVRLGLAEHIQDTNAIFMLSLDE----DDVNSIQEVTKKGK 367 (382)
Q Consensus 326 ~~~i~G~~s~~~~~l~en~~~~~~~L~~----e~~~~l~~~~~~~~ 367 (382)
+++++|++| .++++.|+++-...|+. +....++++++.-+
T Consensus 285 ~~~lvGm~s--~~~l~~nLdan~~~ls~~~~Qevl~~~r~~~~~~k 328 (342)
T KOG1576|consen 285 STVLVGMSS--RQLLRINLDANFDRLSSKHEQEVLRILREILKETK 328 (342)
T ss_pred ceEEecCch--HHHHHHHHHhhhccccchhHHHHHHHHHHHhhhhc
Confidence 999999999 99999999975445665 33344455554433
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00012 Score=65.20 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHc-CCCeeeeccccccccCChhhhHHHHHHHhCCcEEEcc
Q 016794 175 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 247 (382)
Q Consensus 175 ~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~s 247 (382)
+.+.|+.||+++.+|+|..||||.|+..++++++.. .+.|..+|+...-.+. ...++.++|..++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCv-vPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCV-VPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeecccccc-CCHHHHHHhhhcceeeeecC
Confidence 457999999999999999999999999999999985 5779999998775433 34589999999999998876
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.82 E-value=3.4 Score=36.39 Aligned_cols=151 Identities=15% Similarity=0.201 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHH-----------
Q 016794 81 NAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID----------- 149 (382)
Q Consensus 81 ~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e----------- 149 (382)
++|..-++-|-+.+|-.-..|. +-+.|++ ++. ++..+. ..+++.+.+++.
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~----LL~~L~~---~k~----v~g~Gv--------Eid~~~v~~cv~rGv~Viq~Dld 65 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGE----LLAYLKD---EKQ----VDGYGV--------EIDPDNVAACVARGVSVIQGDLD 65 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchH----HHHHHHH---hcC----CeEEEE--------ecCHHHHHHHHHcCCCEEECCHH
Confidence 4555666788899997766553 3344443 111 111111 335555555544
Q ss_pred HHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHH-cCCCeeeeccccccccCCh
Q 016794 150 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVVDMRP 228 (382)
Q Consensus 150 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~-~~~~~~~~q~~~n~~~~~~ 228 (382)
+.|....-+.+|.+.+..--. .+....+.|+++.+-|+---|++.||.-+..+.-+- .|--|..-+++|+-.+...
T Consensus 66 ~gL~~f~d~sFD~VIlsqtLQ---~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN 142 (193)
T PF07021_consen 66 EGLADFPDQSFDYVILSQTLQ---AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN 142 (193)
T ss_pred HhHhhCCCCCccEEehHhHHH---hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Confidence 445555555666665543211 133455668888999998899999999998876555 5655777888888765432
Q ss_pred -----hhhHHHHHHHhCCcEEEcccccccc
Q 016794 229 -----QQKMAELCQLTGVKLITYGTVMGGL 253 (382)
Q Consensus 229 -----~~~~l~~~~~~gi~via~spl~~G~ 253 (382)
-.+..+.|++.||.+.-..++.++.
T Consensus 143 ih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 143 IHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred cccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 2689999999999999999887764
No 20
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.71 E-value=4.6 Score=37.19 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcC-CccEEeccCCcHHHHHHHHHcCCCeee
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 216 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-kir~iGvSn~~~~~l~~~~~~~~~~~~ 216 (382)
.++.+...+-++ .|..+|+++|++-..-.+... +..++.++.++++.+.+ .++...++.-..+.++.+.+.+ ++.
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g--~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG--VDE 90 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC--cCE
Confidence 355565555444 477899999888776554322 33456788899999998 6777787776677888888766 344
Q ss_pred ecccccccc--------CCh------hhhHHHHHHHhCCcEEEcc
Q 016794 217 NQVQHSVVD--------MRP------QQKMAELCQLTGVKLITYG 247 (382)
Q Consensus 217 ~q~~~n~~~--------~~~------~~~~l~~~~~~gi~via~s 247 (382)
+++.+..-+ +.. -...+.++++.|+.+...-
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455443321 111 1367888999998876544
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=82.54 E-value=14 Score=34.17 Aligned_cols=67 Identities=4% Similarity=-0.057 Sum_probs=49.3
Q ss_pred HHHHHHcCCccEEe--ccCCcHHHHHHHHHcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccc
Q 016794 182 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 249 (382)
Q Consensus 182 L~~l~~~Gkir~iG--vSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl 249 (382)
|.+-.++|+. -+| +..-++...+.+...|.++.++=.++.+++...-..++..|+..|+..+.+-|-
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 5555556775 444 333455556666667889999999999988777778899999999998887755
No 22
>PRK00208 thiG thiazole synthase; Reviewed
Probab=80.89 E-value=46 Score=30.59 Aligned_cols=107 Identities=11% Similarity=0.029 Sum_probs=74.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCee
Q 016794 136 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 215 (382)
Q Consensus 136 ~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~ 215 (382)
....+.+...+-.+-..+-++++.|=|=.+..+....++..+++++.++|+++|.+ -+=+++-++...+++.+.| ++
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~-vlpyc~~d~~~ak~l~~~G--~~ 146 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV-VLPYCTDDPVLAKRLEEAG--CA 146 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC--CC
Confidence 34678888888888888999999999888888877777799999999999999986 3446677888888887765 33
Q ss_pred eeccccccccCC---hhhhHHHHHHH-hCCcEEE
Q 016794 216 SNQVQHSVVDMR---PQQKMAELCQL-TGVKLIT 245 (382)
Q Consensus 216 ~~q~~~n~~~~~---~~~~~l~~~~~-~gi~via 245 (382)
+++..=.+.-.. ...+.+....+ .++.|++
T Consensus 147 ~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIv 180 (250)
T PRK00208 147 AVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIV 180 (250)
T ss_pred EeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 332211111000 01345666666 4777775
No 23
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=80.12 E-value=51 Score=31.25 Aligned_cols=153 Identities=8% Similarity=-0.005 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcCh--HHHHHHHHHhh-hhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHH
Q 016794 75 DINNAVNAMLHYVDAGLTTFDMADIYGP--AEDLYGIFINR-VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 151 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDTA~~YG~--sE~~lG~al~~-~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~S 151 (382)
+.++..+.++.+.+.|++.|+.--.-.. ..+.+- ++++ .+ + +.+ .-+.. . .++.+... .+-+.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~-~lr~~~g-~----~~l----~vD~n-~--~~~~~~A~-~~~~~ 199 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIR-AIREAAP-D----ARL----RVDAN-Q--GWTPEEAV-ELLRE 199 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHH-HHHHhCC-C----CeE----EEeCC-C--CcCHHHHH-HHHHH
Confidence 5577778888889999999986421111 112222 2222 22 1 111 11111 1 23444332 23334
Q ss_pred HhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeecccccccc-CChh
Q 016794 152 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQ 229 (382)
Q Consensus 152 L~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~ 229 (382)
|+.++ +.++-.|-+. +-++.+.+|++...|. ..|=+-++.+.+..+++.+ ..+++|...+.+- ...-
T Consensus 200 l~~~~-----l~~iEeP~~~-----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~-~~d~v~~~~~~~GGi~~~ 268 (316)
T cd03319 200 LAELG-----VELIEQPVPA-----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGG-AYDGINIKLMKTGGLTEA 268 (316)
T ss_pred HHhcC-----CCEEECCCCC-----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC-CCCEEEEeccccCCHHHH
Confidence 45444 4455555432 2366678888887777 3455567888999988764 4777887755431 1123
Q ss_pred hhHHHHHHHhCCcEEEccccccc
Q 016794 230 QKMAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 230 ~~~l~~~~~~gi~via~spl~~G 252 (382)
..+..+|+++|+.++..+-+.++
T Consensus 269 ~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 269 LRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHHcCCCEEEECchhhH
Confidence 57899999999999986555443
No 24
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=78.40 E-value=68 Score=32.26 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCc---HHHHHHHHHcCCCe
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILENGIPV 214 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~---~~~l~~~~~~~~~~ 214 (382)
.++++.+.+.+++..+.++ .++.+-+-.|.......+.+++.|..++++..=..+.+++-. ++.++++.+.+ +
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g--v 134 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG--V 134 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC--C
Confidence 4788899888888777652 356666666543332235678888888888211257777644 57777877654 3
Q ss_pred eeeccccccccCChh---------------------------hhHHHHHHHhCCcEEEcccccccc
Q 016794 215 VSNQVQHSVVDMRPQ---------------------------QKMAELCQLTGVKLITYGTVMGGL 253 (382)
Q Consensus 215 ~~~q~~~n~~~~~~~---------------------------~~~l~~~~~~gi~via~spl~~G~ 253 (382)
+.+.+.++-+++... -+-+..+.+.|+.+....++-.|.
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 344444444332111 123456777888887777776653
No 25
>PRK08609 hypothetical protein; Provisional
Probab=78.30 E-value=61 Score=33.79 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCcEEeCCCCc-------ChHHHHHHHH---HhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHH
Q 016794 78 NAVNAMLHYVDAGLTTFDMADIY-------GPAEDLYGIF---INRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 147 (382)
Q Consensus 78 ~~~~~l~~A~~~Gi~~fDTA~~Y-------G~sE~~lG~a---l~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~ 147 (382)
...++++.|.+.|++.|=.++++ |.+...+-.. ++..++... .+ ++..+.... +.++....-
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~-~i--~Il~GiEv~-----i~~~g~~d~ 421 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYP-EI--DILSGIEMD-----ILPDGSLDY 421 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcC-CC--eEEEEEEEe-----ecCCcchhh
Confidence 35669999999999998777664 2222222222 222222211 22 222222211 111111112
Q ss_pred HHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccC------Cc-----HHHHHHH-HHcCCCee
Q 016794 148 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FD-----TERLRII-LENGIPVV 215 (382)
Q Consensus 148 ~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn------~~-----~~~l~~~-~~~~~~~~ 215 (382)
.+..|+. .||+ +.-+|++... + .++.++.+.++.+.|.+.-||=-. +. .+.+.++ .+.|..+.
T Consensus 422 ~~~~L~~--~D~v-I~SvH~~~~~-~-~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lE 496 (570)
T PRK08609 422 DDEVLAE--LDYV-IAAIHSSFSQ-S-EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALE 496 (570)
T ss_pred cHHHHHh--hCEE-EEEeecCCCC-C-HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEE
Confidence 2224443 4655 6677875332 2 577889999999999998887554 11 1233333 44565454
Q ss_pred eeccccccccCChhhhHHHHHHHhCCcEE
Q 016794 216 SNQVQHSVVDMRPQQKMAELCQLTGVKLI 244 (382)
Q Consensus 216 ~~q~~~n~~~~~~~~~~l~~~~~~gi~vi 244 (382)
+|-..+ .......++..|.+.|+.+.
T Consensus 497 INa~~~---r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 497 LNANPN---RLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EcCCcc---ccCccHHHHHHHHHcCCEEE
Confidence 444332 22234578899999998654
No 26
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=77.97 E-value=1.3 Score=42.57 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=37.6
Q ss_pred cCCccEEeccCCcHHHHHHHHHcCCCeeeeccccccccCChhhhHHHHHHHhCCc
Q 016794 188 EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 242 (382)
Q Consensus 188 ~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~ 242 (382)
-|+|||+||--|+.+.+.++....-.-++.+.+..+|--..+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 5999999999999999999886422233444444443222344778888888876
No 27
>PRK08392 hypothetical protein; Provisional
Probab=77.73 E-value=52 Score=29.38 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCcEEeCCCCcC--hHHHHHHHH---HhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHHH
Q 016794 78 NAVNAMLHYVDAGLTTFDMADIYG--PAEDLYGIF---INRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 152 (382)
Q Consensus 78 ~~~~~l~~A~~~Gi~~fDTA~~YG--~sE~~lG~a---l~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL 152 (382)
...+.+..|.+.|++.|=.+++.- ..+. +-.. +.+.+.. . .+ ++..+....- .++. ....+..+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~-~~~y~~~i~~l~~~-~-~i--~il~GiE~~~-----~~~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSK-FNAYINEIRQWGEE-S-EI--VVLAGIEANI-----TPNG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhh-HHHHHHHHHHHhhc-c-Cc--eEEEeEEeee-----cCCc-chhHHHHH
Confidence 467899999999999885555531 1111 1111 2222211 1 22 2222222210 1111 12223334
Q ss_pred hhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCC-------c-HHHH----HHHHHcCCCeeeeccc
Q 016794 153 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-------D-TERL----RIILENGIPVVSNQVQ 220 (382)
Q Consensus 153 ~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~-------~-~~~l----~~~~~~~~~~~~~q~~ 220 (382)
+. .||+ +.-+|.+.. ....++-.+.+.++.+.|.+.-+|=-.. . .+.+ +.+.+.|..+.+|-.
T Consensus 84 ~~--~D~v-I~SvH~~~~-~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt~- 158 (215)
T PRK08392 84 KK--LDYV-IASVHEWFG-RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISSR- 158 (215)
T ss_pred hh--CCEE-EEEeecCcC-CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeCC-
Confidence 42 4555 556684322 2225677888888999999888874321 1 1232 333345655666542
Q ss_pred cccccCChhhhHHHHHHHhCCcEE
Q 016794 221 HSVVDMRPQQKMAELCQLTGVKLI 244 (382)
Q Consensus 221 ~n~~~~~~~~~~l~~~~~~gi~vi 244 (382)
+ +.+...+++.|++.|+.++
T Consensus 159 ~----~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 159 Y----RVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred C----CCCCHHHHHHHHHcCCEEE
Confidence 2 2345578999999998764
No 28
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=77.29 E-value=27 Score=32.18 Aligned_cols=66 Identities=5% Similarity=-0.153 Sum_probs=47.0
Q ss_pred HHHHHcCCccEEe--ccCCcHHHHHHHHHcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccc
Q 016794 183 TDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 249 (382)
Q Consensus 183 ~~l~~~Gkir~iG--vSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl 249 (382)
.+-.++|+. .+| +..-++...+.+...|+++.++=.++.+++...-..++..++..|+..+.+-|-
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 334445664 344 334455666666667888999999999988776678888899999988887654
No 29
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=74.71 E-value=42 Score=31.29 Aligned_cols=68 Identities=7% Similarity=0.011 Sum_probs=48.3
Q ss_pred HHHHHHcCCccEEe-ccCCcHHHHHHHHHcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccc
Q 016794 182 LTDLKEEGKIKTVA-LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 249 (382)
Q Consensus 182 L~~l~~~Gkir~iG-vSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl 249 (382)
|.+..++|+.-.-. +..-++...+.+...|+++.++=.|+.+++......++..++..|+..+.+-|-
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 44555567753322 333455666666667888999999999998777678889999999988876653
No 30
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=72.92 E-value=77 Score=29.09 Aligned_cols=107 Identities=11% Similarity=0.019 Sum_probs=74.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCee
Q 016794 136 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 215 (382)
Q Consensus 136 ~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~ 215 (382)
....+.+.-.+-.+-..+-+|+++|=|=.+..+..-.++..+++++.++|+++|.+ -+=+++-++...+++.+.| ++
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd~~~ar~l~~~G--~~ 146 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFT-VLPYCTDDPVLAKRLEDAG--CA 146 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC--CC
Confidence 34678888888888889999999999888888777677799999999999999976 3446677888888887765 33
Q ss_pred eeccccccccCC---hhhhHHHHHHH-hCCcEEE
Q 016794 216 SNQVQHSVVDMR---PQQKMAELCQL-TGVKLIT 245 (382)
Q Consensus 216 ~~q~~~n~~~~~---~~~~~l~~~~~-~gi~via 245 (382)
+++..=.+.-.. ...+++....+ .++.|++
T Consensus 147 ~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 147 AVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred EeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 332211111100 01345555555 4777775
No 31
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=68.92 E-value=12 Score=37.69 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=49.2
Q ss_pred HhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeee--eccc
Q 016794 152 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS--NQVQ 220 (382)
Q Consensus 152 L~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~--~q~~ 220 (382)
-+|+.+.|+|.+ ..+++|+++..++.+++|+..+||+-..-.+.++++.+.++.|++ -|..
T Consensus 195 ~kR~~~gyld~~--------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTS 257 (545)
T TIGR01228 195 DKRLETKYCDEQ--------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTS 257 (545)
T ss_pred HHHHhcCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCc
Confidence 357778998853 223899999999999999999999999889999999988765544 4554
No 32
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=68.33 E-value=62 Score=30.61 Aligned_cols=68 Identities=9% Similarity=-0.067 Sum_probs=42.3
Q ss_pred cceeeEeeecccCCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHc
Q 016794 121 EFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 188 (382)
Q Consensus 121 ~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 188 (382)
.+++++.+...-.-.....+++.+.+++.+.+++.|.|.||+=.=+....+....+...++|..|+++
T Consensus 69 kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~ 136 (294)
T cd06543 69 DVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKE 136 (294)
T ss_pred eEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHH
Confidence 55555554332111112457899999999999999999999855543221111245567777777765
No 33
>PRK05414 urocanate hydratase; Provisional
Probab=68.24 E-value=12 Score=37.66 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=49.3
Q ss_pred HhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeee--eccc
Q 016794 152 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS--NQVQ 220 (382)
Q Consensus 152 L~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~--~q~~ 220 (382)
-+|+.+.|+|.+- .+++|+++..++.+++|+..+||+-..-.+.++++++.++.|++ -|..
T Consensus 204 ~kR~~~gyld~~~--------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTS 266 (556)
T PRK05414 204 DKRLRTGYLDEKA--------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTS 266 (556)
T ss_pred HHHHhCCcceeEc--------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCcc
Confidence 4577889988542 23899999999999999999999999889999999988765544 4554
No 34
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=66.42 E-value=1.1e+02 Score=28.19 Aligned_cols=156 Identities=11% Similarity=0.063 Sum_probs=87.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcChHHH-HHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHHHh
Q 016794 75 DINNAVNAMLHYVDAGLTTFDMADIYGPAED-LYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 153 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~-~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL~ 153 (382)
+.++..+.++.+.+.|++.|-.=-.-...+. -.=+++++.-.+ ++.+ .+ ..+ ..++.+...+-+ +.|+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~~g~---~~~l--~v----Dan-~~~~~~~a~~~~-~~l~ 153 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGD---DAEL--RV----DAN-RGWTPKQAIRAL-RALE 153 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHhcCC---CCEE--EE----eCC-CCcCHHHHHHHH-HHHH
Confidence 4566777788888999998864322111111 111233321111 1211 11 111 134544443333 2334
Q ss_pred hcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccC-Chhhh
Q 016794 154 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQK 231 (382)
Q Consensus 154 ~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~ 231 (382)
.+ ++.++..|-+.. -++.+.+|++.-.+. ..|=+-++.+.+.++++.+ .++++|+..+..-. ..-..
T Consensus 154 ~~-----~i~~iEeP~~~~-----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~GGi~~~~~ 222 (265)
T cd03315 154 DL-----GLDYVEQPLPAD-----DLEGRAALARATDTPIMADESAFTPHDAFRELALG-AADAVNIKTAKTGGLTKAQR 222 (265)
T ss_pred hc-----CCCEEECCCCcc-----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC-CCCEEEEecccccCHHHHHH
Confidence 44 455566664322 356677787776665 4455567888888888754 47778887664321 12357
Q ss_pred HHHHHHHhCCcEEEccccccc
Q 016794 232 MAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 232 ~l~~~~~~gi~via~spl~~G 252 (382)
+...|+++|+.++..+.+.+|
T Consensus 223 ~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 223 VLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHcCCcEEecCccchH
Confidence 899999999999987655544
No 35
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=65.50 E-value=12 Score=37.05 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=47.9
Q ss_pred hhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeee
Q 016794 153 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 217 (382)
Q Consensus 153 ~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~ 217 (382)
+||.+.|+|.. ...++|+++-.++..++|+-.+||+-..-.+.+.++++.++.|+++
T Consensus 205 ~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 205 KRLRTGYLDEI--------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 57778998842 2338999999999999999999999998899999999988776665
No 36
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=64.77 E-value=99 Score=28.41 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=45.2
Q ss_pred HHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEccc
Q 016794 182 LTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 248 (382)
Q Consensus 182 L~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~sp 248 (382)
|.+..++|+.- ...+...++..++.+...|.++.++=++.++++...-..++..++..|+.++.+-|
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 44455667752 23344456667777777888888888999997655445677777777887777653
No 37
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=63.83 E-value=41 Score=31.09 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCC-----CCCCcHHHHHHHHHHHHHc-CCccEEecc---CCcHHHHHHHH
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD-----YSNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIIL 208 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~-----~~~~~~~e~~~aL~~l~~~-Gkir~iGvS---n~~~~~l~~~~ 208 (382)
.++.+...+ +-+.|.++|+++|++-+..... ...+ ....++.++.+++. +.++...++ ......++.+.
T Consensus 18 ~~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 18 QFTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred ecCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 355555444 4455888999999998653211 0011 12345566666443 346666654 33466777777
Q ss_pred HcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEc
Q 016794 209 ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 246 (382)
Q Consensus 209 ~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~ 246 (382)
+.|+ +.+.+-.+.-+...-.+.+++++++|+.+...
T Consensus 96 ~~g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 96 DLGV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HcCC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 7654 33443333222223357888999999876543
No 38
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=63.32 E-value=30 Score=32.76 Aligned_cols=141 Identities=20% Similarity=0.272 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhcCCCCcceEEEecCCC---CCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHH--HHHHHcCCCee
Q 016794 141 SSIVRESIDVSRRRMDVPCLDMLQFHWWDY---SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL--RIILENGIPVV 215 (382)
Q Consensus 141 ~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~---~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l--~~~~~~~~~~~ 215 (382)
.+.+++.+.+-+++.|+|++=++..-.-+. ..+...+++++|++..+++.-. .++..+ ..++..|++|.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCeE
Confidence 367889999999999988544443332222 0112345788999998877532 233333 23334564432
Q ss_pred eeccccccccCChhhhHHHHHHHhCCcEEE---cccccccccCccccCCCCCCCCCCCCCCCchhHHhHhhhhccCCchh
Q 016794 216 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT---YGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQ 292 (382)
Q Consensus 216 ~~q~~~n~~~~~~~~~~l~~~~~~gi~via---~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (382)
|=.+-+.. ....+.+.++++|+.+.+ .+|++.|++
T Consensus 205 -N~tP~~~a---~~P~l~ela~~~gvpi~GdD~KT~lAAplv-------------------------------------- 242 (295)
T PF07994_consen 205 -NGTPSNIA---DDPALVELAEEKGVPIAGDDGKTPLAAPLV-------------------------------------- 242 (295)
T ss_dssp -E-SSSTTT---TSHHHHHHHHHHTEEEEESSBS-HHHHHHH--------------------------------------
T ss_pred -eccCcccc---CCHHHHHHHHHcCCCeecchHhhhhhhHHH--------------------------------------
Confidence 22232222 134889999999999875 223333322
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCC
Q 016794 293 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRL 334 (382)
Q Consensus 293 ~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s 334 (382)
.. +-.+.++|.+.|..-.+-.++|....|.+. +|.+.
T Consensus 243 -lD-Lirl~~la~r~g~~Gv~~~ls~ffK~P~~~---~g~~~ 279 (295)
T PF07994_consen 243 -LD-LIRLAKLALRRGMGGVQEWLSFFFKSPMVP---PGPPQ 279 (295)
T ss_dssp -HH-HHHHHHHHHHTTS-EEHHHHHHHBSS-T-----TTSTT
T ss_pred -HH-HHHHHHHHHHcCCCChhHHHHHHhcCCCcc---CCCCC
Confidence 11 246778899999988899999999999753 56655
No 39
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=62.93 E-value=1.4e+02 Score=28.15 Aligned_cols=213 Identities=14% Similarity=0.146 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeee
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 217 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~ 217 (382)
.++.+. +..+-+.|.++|+++|++-..+.|..... ..+.++.+..+.+...++...+. .+...++.+.+.|.+...+
T Consensus 22 ~~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~-~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i 98 (287)
T PRK05692 22 FIPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQ-MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAV 98 (287)
T ss_pred CcCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccc-cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEE
Confidence 345554 34455668999999999975555532211 33446666666655556666665 4788889988876442222
Q ss_pred ccccccc------cCCh------hhhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhHHhHh-hh
Q 016794 218 QVQHSVV------DMRP------QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKR-MV 284 (382)
Q Consensus 218 q~~~n~~------~~~~------~~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 284 (382)
-+..|-. .... -.+.+++++++|+.+.++-..+.|- |..+ +.....+.++.+ +.
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~------------~~~~-~~~~~~~~~~~~~~~ 165 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC------------PYEG-EVPPEAVADVAERLF 165 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC------------CCCC-CCCHHHHHHHHHHHH
Confidence 1222111 1111 1368999999999886443332221 0001 111111111111 11
Q ss_pred hc----------c--CCchhHHHHHHHHHHHHH----------HcCCCHHHHHHHHHHhCCCceeEeeCC--------CC
Q 016794 285 DA----------W--GGWSQFQVLLQTLKRIAS----------KHGVSIPVVAVRYILDQPAVAGSMIGV--------RL 334 (382)
Q Consensus 285 ~~----------~--~~~~~~~~~~~~l~~ia~----------~~g~s~aqlaL~w~l~~~~v~~~i~G~--------~s 334 (382)
+. . ..+.....+++.+++-.. .+|+.++...-++-..-..+.+.+-|. +.
T Consensus 166 ~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~a 245 (287)
T PRK05692 166 ALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGAS 245 (287)
T ss_pred HcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCcc
Confidence 10 0 112234444444443221 124556666556655556667777654 32
Q ss_pred C--cHhHHHHHhhhhcC--CCCHHHHHHHHHHHhcC
Q 016794 335 G--LAEHIQDTNAIFML--SLDEDDVNSIQEVTKKG 366 (382)
Q Consensus 335 ~--~~~~l~en~~~~~~--~L~~e~~~~l~~~~~~~ 366 (382)
+ ..|++--+++.... .++-+.+.++.+..+..
T Consensus 246 GN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~ 281 (287)
T PRK05692 246 GNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSK 281 (287)
T ss_pred ccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 2 35777666665544 46666666666665543
No 40
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=62.45 E-value=1.7e+02 Score=28.99 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHHcCCcE-EeCCCCcChHHHHHHHHHhhhhhcCCccceeeEeee---cccCCCCCCCCHHHHHHHHH
Q 016794 74 IDINNAVNAMLHYVDAGLTT-FDMADIYGPAEDLYGIFINRVRRERPPEFLDKVRGL---TKWVPPPVKMTSSIVRESID 149 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~~Gi~~-fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~---tk~~~~~~~~~~~~i~~~~e 149 (382)
.+.+.-.+-++.|++.|-.. .|-+. .|+-..+=-+.|+..+.+ +-++-+. .+......+++++.+.+.+|
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-Ggdl~~iR~~il~~s~vp-----vGTVPiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLST-GGDLDEIRKAILDAVPVP-----VGTVPIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHcCCCC-----ccCccHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 46677788899999999774 46553 365333222233322211 1111111 01111223678888888887
Q ss_pred HHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHH-cCCCeeeeccccccccCCh
Q 016794 150 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVVDMRP 228 (382)
Q Consensus 150 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~-~~~~~~~~q~~~n~~~~~~ 228 (382)
+-.+ |-+|.+-+|.- + +.+.++.++++| |..|+-+-....+...+. ++ .=|++ ...
T Consensus 148 ~qa~----dGVDfmTiH~G------i--~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~~--------~ENPl-ye~ 204 (423)
T TIGR00190 148 KQAK----DGVDFMTIHAG------V--LLEYVERLKRSG--RITGIVSRGGAILAAWMLHHH--------KENPL-YKN 204 (423)
T ss_pred HHHH----hCCCEEEEccc------h--hHHHHHHHHhCC--CccCeecCcHHHHHHHHHHcC--------CcCch-HHH
Confidence 7655 45889999974 1 466788899988 567877777776665554 32 12444 223
Q ss_pred hhhHHHHHHHhCCcEE
Q 016794 229 QQKMAELCQLTGVKLI 244 (382)
Q Consensus 229 ~~~~l~~~~~~gi~vi 244 (382)
-+++++.|+++++.+-
T Consensus 205 fD~lLeI~~~yDVtlS 220 (423)
T TIGR00190 205 FDYILEIAKEYDVTLS 220 (423)
T ss_pred HHHHHHHHHHhCeeee
Confidence 3589999999999884
No 41
>PRK13796 GTPase YqeH; Provisional
Probab=62.33 E-value=1.4e+02 Score=29.14 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=77.0
Q ss_pred CChHHHHHHHHHHHHcC---CcEEeCCCCcChHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHH
Q 016794 74 IDINNAVNAMLHYVDAG---LTTFDMADIYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 150 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~~G---i~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~ 150 (382)
.+.++..++++..-+.- +-.+|..+.-+.-...+.+... ... . +.+.+|..--+.....+.+.+.++.
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~----~kp-v----iLViNK~DLl~~~~~~~~i~~~l~~ 124 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG----NNP-V----LLVGNKADLLPKSVKKNKVKNWLRQ 124 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC----CCC-E----EEEEEchhhCCCccCHHHHHHHHHH
Confidence 45566667776665544 4567866654432222333222 111 2 2346775432223345667777777
Q ss_pred HHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHH
Q 016794 151 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 208 (382)
Q Consensus 151 SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~ 208 (382)
-.+.+|....|++++-.-.. ..+++.++.+.+..+.+.+-.+|.+|.+-..+-..+
T Consensus 125 ~~k~~g~~~~~v~~vSAk~g--~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 125 EAKELGLRPVDVVLISAQKG--HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHHhcCCCcCcEEEEECCCC--CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 77778876568887765433 237888999988888888999999999988776544
No 42
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=61.98 E-value=1.5e+02 Score=28.45 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEeC--CCCcC-----h-HHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHH
Q 016794 75 DINNAVNAMLHYVDAGLTTFDM--ADIYG-----P-AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 146 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDT--A~~YG-----~-sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~ 146 (382)
+.++..+.++.+.+.|++.|-. +..|. . ..+++ +++++.-.+ ++.+.+ .. +. .++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~---~~~l~v----Da-N~--~~~~~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGP---DVDLMV----DA-NG--RWDLAEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCC---CCEEEE----EC-CC--CCCHHHHHH
Confidence 4667778888888999998864 33331 1 11122 223321111 222211 11 11 345444433
Q ss_pred HHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeecccccccc
Q 016794 147 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD 225 (382)
Q Consensus 147 ~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~ 225 (382)
- +++|. ..++.+++.|-+.. .++.+.+|++.-.+. ..|=|-++.+.+.++++.+ .++++|+.....-
T Consensus 208 ~----~~~l~--~~~i~~iEqP~~~~-----~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~G 275 (357)
T cd03316 208 L----ARALE--EYDLFWFEEPVPPD-----DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG-AVDIIQPDVTKVG 275 (357)
T ss_pred H----HHHhC--ccCCCeEcCCCCcc-----CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC-CCCEEecCccccC
Confidence 2 23332 23555677664422 466677888876665 4445567889999998765 4778888755431
Q ss_pred C-ChhhhHHHHHHHhCCcEEEcc
Q 016794 226 M-RPQQKMAELCQLTGVKLITYG 247 (382)
Q Consensus 226 ~-~~~~~~l~~~~~~gi~via~s 247 (382)
. ..-..+...|+++|+.++..+
T Consensus 276 Gi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 276 GITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred CHHHHHHHHHHHHHcCCeEeccC
Confidence 1 123478999999999988655
No 43
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=61.65 E-value=71 Score=28.65 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=58.6
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 237 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 237 (382)
.++.++-.|-+.. -++.+.+|.+...+. ..+=|-++.+.+..+++.+ .++++|+..+.+-. ..-..+..+|+
T Consensus 120 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~-~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPD-----DLEGYAALRRRTGIPIAADESVTTVDDALEALELG-AVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCcc-----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 5677777775432 356677888887766 3455556778887777654 47777877654311 12247889999
Q ss_pred HhCCcEEEccccccc
Q 016794 238 LTGVKLITYGTVMGG 252 (382)
Q Consensus 238 ~~gi~via~spl~~G 252 (382)
++|+.++..+.+..|
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999987765544
No 44
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=61.33 E-value=1.5e+02 Score=28.06 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=62.0
Q ss_pred hhcCCCCcceEEEecCCC----CCCcHHHHHHHHHHHHHcCCccE-EeccCC---cHHHHHHHHH--cCCCeeeeccccc
Q 016794 153 RRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEEGKIKT-VALTNF---DTERLRIILE--NGIPVVSNQVQHS 222 (382)
Q Consensus 153 ~~Lg~d~iDl~~lH~p~~----~~~~~~e~~~aL~~l~~~Gkir~-iGvSn~---~~~~l~~~~~--~~~~~~~~q~~~n 222 (382)
++.| .|++-+|-... .+....|+.+.|+++.+.=+|-. ||=|+. +++.++++.+ .|-++-..-...+
T Consensus 161 k~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanld 237 (403)
T COG2069 161 KKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANLD 237 (403)
T ss_pred HHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeeccccc
Confidence 4477 67888886432 22237889999999998887764 577764 4677888776 3544443333333
Q ss_pred cccCChhhhHHHHHHHhCCcEEEccccc
Q 016794 223 VVDMRPQQKMAELCQLTGVKLITYGTVM 250 (382)
Q Consensus 223 ~~~~~~~~~~l~~~~~~gi~via~spl~ 250 (382)
+ .-+.+.+++.++|=.|++|+++.
T Consensus 238 l----Dy~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 238 L----DYERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred c----CHHHHHHHHHhcCceEEEeeccC
Confidence 2 12478999999999999999874
No 45
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=59.59 E-value=42 Score=33.09 Aligned_cols=81 Identities=7% Similarity=-0.013 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHHHhhcC
Q 016794 77 NNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD 156 (382)
Q Consensus 77 ~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL~~Lg 156 (382)
.....+++.|++.|++++|||...-. ...+....++.+ + +.-...-+.|+ .+--.....+++--+ .
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~-~~~~~~~a~~Ag------i--t~v~~~G~dPG---i~nv~a~~a~~~~~~--~ 144 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP-PWKLDEEAKKAG------I--TAVLGCGFDPG---ITNVLAAYAAKELFD--E 144 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch-hhhhhHHHHHcC------e--EEEcccCcCcc---hHHHHHHHHHHHhhc--c
Confidence 34558999999999999999977543 111222222111 0 01111222332 222223333322221 4
Q ss_pred CCCcceEEEecCCCC
Q 016794 157 VPCLDMLQFHWWDYS 171 (382)
Q Consensus 157 ~d~iDl~~lH~p~~~ 171 (382)
+++||+|..+.|++.
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 899999999999876
No 46
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=59.45 E-value=77 Score=28.41 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcCh------HHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHH
Q 016794 74 IDINNAVNAMLHYVDAGLTTFDMADIYGP------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 147 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~------sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~ 147 (382)
.++++...+.+.|.+.|..|+=|+..|+. .-+++-+.++. .+ .+|. ..+. .+.+...+-
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~-------~v--~IKa----aGGi--rt~~~a~~~ 193 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD-------TI--GVKA----SGGV--RTAEDAIAM 193 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc-------CC--eEEE----eCCC--CCHHHHHHH
Confidence 46677788889999999999999988862 22333333331 11 1221 1111 167888888
Q ss_pred HHHHHhhcCCCC
Q 016794 148 IDVSRRRMDVPC 159 (382)
Q Consensus 148 ~e~SL~~Lg~d~ 159 (382)
++.--.|+|+..
T Consensus 194 i~aGa~riGts~ 205 (211)
T TIGR00126 194 IEAGASRIGASA 205 (211)
T ss_pred HHHhhHHhCcch
Confidence 888889999864
No 47
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=59.33 E-value=1.9e+02 Score=28.53 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=54.3
Q ss_pred hhcCCCCcceEEEecCCCC----CCcHHHHHHHHHHHHHcCCc-cEEecc---CCcHHHHHHHHHc--CCCeeeeccccc
Q 016794 153 RRMDVPCLDMLQFHWWDYS----NPGYLDALNHLTDLKEEGKI-KTVALT---NFDTERLRIILEN--GIPVVSNQVQHS 222 (382)
Q Consensus 153 ~~Lg~d~iDl~~lH~p~~~----~~~~~e~~~aL~~l~~~Gki-r~iGvS---n~~~~~l~~~~~~--~~~~~~~q~~~n 222 (382)
+.+| +|++.||.-..+ +...++..++.++..+.=.+ --|+=| ..+++.++++++. |.++-++-..
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt-- 224 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASAN-- 224 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecC--
Confidence 5565 788888874332 12234566666665343222 233323 4577888888773 3334332221
Q ss_pred cccCC-hhhhHHHHHHHhCCcEEEccccccc
Q 016794 223 VVDMR-PQQKMAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 223 ~~~~~-~~~~~l~~~~~~gi~via~spl~~G 252 (382)
.. .-..+...|+++|..+++++|..-+
T Consensus 225 ---~e~Ny~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 225 ---LDLDYEKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred ---chhhHHHHHHHHHHhCCeEEEEcCCcHH
Confidence 12 2347899999999999999987544
No 48
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.74 E-value=96 Score=31.64 Aligned_cols=65 Identities=8% Similarity=-0.052 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCccE----EeccCCcHHHHHHHHHc--CCCeeeeccccccccCChhhhHHHHHHHhCC
Q 016794 175 YLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 241 (382)
Q Consensus 175 ~~e~~~aL~~l~~~Gkir~----iGvSn~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi 241 (382)
.++..++++.+++.|..-. +|+-+-+.+.+++.++. ..+++ ++.++.+.+.+...+.+.+++.+.
T Consensus 322 ~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 322 TSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 6788899999999996433 46667777777665542 12343 334456666777788888887754
No 49
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=57.65 E-value=1.5e+02 Score=27.08 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=47.7
Q ss_pred HhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccC-CcHHHHHHHHHcC-CCeeee-ccccccccCCh
Q 016794 152 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENG-IPVVSN-QVQHSVVDMRP 228 (382)
Q Consensus 152 L~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn-~~~~~l~~~~~~~-~~~~~~-q~~~n~~~~~~ 228 (382)
|+.+| +|.+.+|..+.....-.--++.+.++++.-.+.-|...+ .+.+.+.++...+ ..-.++ ..-|.- .-.
T Consensus 164 l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~--~~~ 238 (254)
T TIGR00735 164 VEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR--EIT 238 (254)
T ss_pred HHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC--CCC
Confidence 34566 567777765442110011245566666665666666554 4678888888754 332211 111221 122
Q ss_pred hhhHHHHHHHhCCcE
Q 016794 229 QQKMAELCQLTGVKL 243 (382)
Q Consensus 229 ~~~~l~~~~~~gi~v 243 (382)
..++.++|+++||.+
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 358899999999864
No 50
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=56.56 E-value=1.9e+02 Score=27.68 Aligned_cols=110 Identities=7% Similarity=0.039 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccC---------CcHHHHHHHHHc
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FDTERLRIILEN 210 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn---------~~~~~l~~~~~~ 210 (382)
+.+.+.+.++...+..+ +.-+.+=.-|+.........+-++.+++-|.++.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 34445554443332323 333445444443322355677788888888887555543 345556666666
Q ss_pred CCCeeeecccccccc--CChhhhHHHHHHHhCCcEEEcccccccc
Q 016794 211 GIPVVSNQVQHSVVD--MRPQQKMAELCQLTGVKLITYGTVMGGL 253 (382)
Q Consensus 211 ~~~~~~~q~~~n~~~--~~~~~~~l~~~~~~gi~via~spl~~G~ 253 (382)
|.. ..+-+..|-.. ...-...+..+++.||.+...++|..|.
T Consensus 197 g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKT-VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 633 23444443211 0112357778889999999999998874
No 51
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.54 E-value=38 Score=30.16 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccC-CcHHHHHHHHHcCCCeeeec
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 218 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn-~~~~~l~~~~~~~~~~~~~q 218 (382)
+++...+-++ .|-+-|+..+.+=+ .. .+..+.+++++++..=-.||..+ .+.++++++++.|-+|.+
T Consensus 14 ~~~~a~~ia~-al~~gGi~~iEit~------~t---p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv-- 81 (201)
T PRK06015 14 DVEHAVPLAR-ALAAGGLPAIEITL------RT---PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV-- 81 (201)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC------CC---ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE--
Confidence 4454444433 34556655444422 12 22455566666554335688876 478899999998865532
Q ss_pred cccccccCChhhhHHHHHHHhCCcEE
Q 016794 219 VQHSVVDMRPQQKMAELCQLTGVKLI 244 (382)
Q Consensus 219 ~~~n~~~~~~~~~~l~~~~~~gi~vi 244 (382)
+ +....+++++|+++||.++
T Consensus 82 ---S---P~~~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 82 ---S---PGTTQELLAAANDSDVPLL 101 (201)
T ss_pred ---C---CCCCHHHHHHHHHcCCCEe
Confidence 3 3345699999999999987
No 52
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=56.22 E-value=82 Score=29.23 Aligned_cols=105 Identities=9% Similarity=0.035 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCC-----CcHHHHHHHHHHHHHcCCccEEeccCCc---HHHHHHHHH
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-----PGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILE 209 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~-----~~~~e~~~aL~~l~~~Gkir~iGvSn~~---~~~l~~~~~ 209 (382)
.++.+.. ..+-+.|.++|+|+|++-+........ ....+.++.+.++.+ +..+..+++... .+.++.+.+
T Consensus 16 ~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 4666654 445556999999999997765432110 001455666655543 346666666443 466666665
Q ss_pred cCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEc
Q 016794 210 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 246 (382)
Q Consensus 210 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~ 246 (382)
.++.. +.+.+..-+...-.+.+++++++|+.+...
T Consensus 94 ~gv~~--iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 SVVDM--IRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCcCE--EEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 55433 333322211222357888999999876643
No 53
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=55.91 E-value=1.1e+02 Score=27.09 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhh
Q 016794 308 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 347 (382)
Q Consensus 308 g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~ 347 (382)
..|=.++||+|++.++.-..++.|+.-+..+|.-.|+..+
T Consensus 71 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 71 DTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 3466788999999987767788999877789988888764
No 54
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=55.64 E-value=1.9e+02 Score=28.41 Aligned_cols=134 Identities=12% Similarity=0.022 Sum_probs=69.6
Q ss_pred ChHHHHHHHHHHHHcCCc-EEeCCCCcChHHHHHHHHHhhhhh---cCCccceeeEeee-cccCCC-CCCCCHHHHHHHH
Q 016794 75 DINNAVNAMLHYVDAGLT-TFDMADIYGPAEDLYGIFINRVRR---ERPPEFLDKVRGL-TKWVPP-PVKMTSSIVRESI 148 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~-~fDTA~~YG~sE~~lG~al~~~~~---~~~~~~~~~~~~~-tk~~~~-~~~~~~~~i~~~~ 148 (382)
+.+....+.+.+...|++ +++|... ...+. +-++++.+.. +.....+.-+.+- ..+.+. ..-+.+++++.--
T Consensus 75 ~~e~~~~~~~~~~~~GvTt~l~t~~t-~~~~~-~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~p~ 152 (380)
T TIGR00221 75 SFETLEIMSERLPKSGCTSFLPTLIT-QPDEN-IKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIREPD 152 (380)
T ss_pred CHHHHHHHHHHHHhcCeeEEeeeccC-CCHHH-HHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhCcC
Confidence 456677777788899998 6676643 22222 3444443321 1000111111111 111111 1123455554332
Q ss_pred HHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCC
Q 016794 149 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 213 (382)
Q Consensus 149 e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~ 213 (382)
.+-+++|--.+-+.+-+=...|+ .+...+.++.|+++|.+-++|=|+-+.+++.++.+.|..
T Consensus 153 ~~~~~~~~~~~~~~i~~vTlAPE---~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~ 214 (380)
T TIGR00221 153 VELFKKFLCEAGGVITKVTLAPE---EDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGAT 214 (380)
T ss_pred HHHHHHHHHhcCCCEEEEEECCC---CCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCC
Confidence 22333332111122222222232 233567889999999999999999999999999987643
No 55
>PRK06740 histidinol-phosphatase; Validated
Probab=54.50 E-value=2.1e+02 Score=27.57 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=57.7
Q ss_pred HHHHHHhhcCCCCcceEEEecCCC---CCCc-------------HHHHHHHHHHHHHcCCccEEeccC------CcH---
Q 016794 147 SIDVSRRRMDVPCLDMLQFHWWDY---SNPG-------------YLDALNHLTDLKEEGKIKTVALTN------FDT--- 201 (382)
Q Consensus 147 ~~e~SL~~Lg~d~iDl~~lH~p~~---~~~~-------------~~e~~~aL~~l~~~Gkir~iGvSn------~~~--- 201 (382)
.++..|+....||+ +.-+|..+. ..+. .+.-.+.+.++.+.|++..||=-. +..
T Consensus 157 ~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~~ 235 (331)
T PRK06740 157 ELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDEN 235 (331)
T ss_pred HHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcchh
Confidence 45556666677777 667787531 1111 122457788888999999888432 111
Q ss_pred ---HHHHH----HHHcCCCeeeecc-cc--ccccCChhhhHHHHHHHhCCcEEE
Q 016794 202 ---ERLRI----ILENGIPVVSNQV-QH--SVVDMRPQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 202 ---~~l~~----~~~~~~~~~~~q~-~~--n~~~~~~~~~~l~~~~~~gi~via 245 (382)
+.+++ +.+.|..+.+|-. .+ ..-+..+...++..|++.|+.++.
T Consensus 236 ~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tl 289 (331)
T PRK06740 236 EQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITL 289 (331)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEE
Confidence 23322 3335666777764 22 222233556799999999998753
No 56
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=53.88 E-value=33 Score=33.40 Aligned_cols=206 Identities=14% Similarity=0.183 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcCh--HHHH---HHHHHhhhhhcCCccceeeEeeecccCCC---CCCCCHHHHHH
Q 016794 75 DINNAVNAMLHYVDAGLTTFDMADIYGP--AEDL---YGIFINRVRRERPPEFLDKVRGLTKWVPP---PVKMTSSIVRE 146 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDTA~~YG~--sE~~---lG~al~~~~~~~~~~~~~~~~~~tk~~~~---~~~~~~~~i~~ 146 (382)
+.++..+-|+.|.+.|++.+=|+-+.-. .+.. +.+.++....-.. .++ ....|. ....+++.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~-~v~------~Disp~~l~~lg~~~~dl-- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGM-EVI------ADISPKVLKKLGISYDDL-- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT--EEE------EEE-CCHHHTTT-BTTBT--
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCC-EEE------EECCHHHHHHcCCCHHHH--
Confidence 5688999999999999999988876632 1111 2222222222211 121 112221 001111111
Q ss_pred HHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeeccccccccC
Q 016794 147 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM 226 (382)
Q Consensus 147 ~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~ 226 (382)
..++.||++.|= | |.... .+.+.+|-+.|.--.+=.|+.+.+.+..+.+.+..+.-+..-+|.. +
T Consensus 83 ---~~~~~lGi~~lR---l---D~Gf~-----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfY-P 147 (357)
T PF05913_consen 83 ---SFFKELGIDGLR---L---DYGFS-----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFY-P 147 (357)
T ss_dssp ---HHHHHHT-SEEE---E---SSS-S-----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B--
T ss_pred ---HHHHHcCCCEEE---E---CCCCC-----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEeccc-C
Confidence 134556644322 1 22222 2334455555777777788888889998887765454444445543 3
Q ss_pred Chh--------hhHHHHHHHhCCcEEEcccccccccCccccCCCCCCCCCCCCCCCchhHHhHhhhhccCCchhHHHHHH
Q 016794 227 RPQ--------QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQ 298 (382)
Q Consensus 227 ~~~--------~~~l~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
.++ .+.-.+.++.||.+.|+-|--.+ ..| |...+ .|...
T Consensus 148 r~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~-~rG---------Pl~~G---LPTlE-------------------- 194 (357)
T PF05913_consen 148 RPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDEN-KRG---------PLYEG---LPTLE-------------------- 194 (357)
T ss_dssp STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS--BT---------TT-S-----BSBG--------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCc-ccC---------CccCC---CCccH--------------------
Confidence 332 23455678899999998876532 222 11111 11111
Q ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhh
Q 016794 299 TLKRIASKH-GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNA 345 (382)
Q Consensus 299 ~l~~ia~~~-g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~ 345 (382)
+| +.+ ..+|...+...+.|..|++|=..-+.+.++....
T Consensus 195 -------~hR~~~-p~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~ 234 (357)
T PF05913_consen 195 -------KHRNLP-PYAAALELFALGLIDDVIIGDPFASEEELKQLAQ 234 (357)
T ss_dssp -------GGTTS--HHHHHHHHHHTTT--EEEE-SC---HHHHHHHHH
T ss_pred -------HHcCCC-HHHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHH
Confidence 11 233 4457777788888899999866433555555433
No 57
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.84 E-value=73 Score=31.18 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=61.1
Q ss_pred EEEecCCCC----------CCcHHHHHHHHHHHHHcCCccEEecc-------CCcHHHHHHHHH--cCC------Ceeee
Q 016794 163 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILE--NGI------PVVSN 217 (382)
Q Consensus 163 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~Gkir~iGvS-------n~~~~~l~~~~~--~~~------~~~~~ 217 (382)
+-||.|+.. ...++++++++.+..+... |.|-+- |.+.++.+++.+ .+. ++.+|
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 578998643 1238889999988865433 233322 667888887776 355 67999
Q ss_pred ccccccccCCh--------hhhHHHHHHHhCCcEEEcccccc
Q 016794 218 QVQHSVVDMRP--------QQKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 218 q~~~n~~~~~~--------~~~~l~~~~~~gi~via~spl~~ 251 (382)
-++||+..... -....+.++++||.+......+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 99999964321 13577788899999998877654
No 58
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=53.83 E-value=1.6e+02 Score=28.21 Aligned_cols=92 Identities=11% Similarity=0.114 Sum_probs=48.0
Q ss_pred hhcCCCCcceEEEec-CCCCCCcHHHHHHHHHHHHHcCCccE-EeccCC---cHHHHHHHHHc--CCCeeeecccccccc
Q 016794 153 RRMDVPCLDMLQFHW-WDYSNPGYLDALNHLTDLKEEGKIKT-VALTNF---DTERLRIILEN--GIPVVSNQVQHSVVD 225 (382)
Q Consensus 153 ~~Lg~d~iDl~~lH~-p~~~~~~~~e~~~aL~~l~~~Gkir~-iGvSn~---~~~~l~~~~~~--~~~~~~~q~~~n~~~ 225 (382)
+.+|.|+||+-+.-. |+..+...++....++...+.=.+=- |..|.. +++.++++++. |-++-++-+.
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat----- 160 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE----- 160 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC-----
Confidence 357878777754322 32212213334444444433222222 555532 67777777763 3333222222
Q ss_pred CChhhhHHHHHHHhCCcEEEcccc
Q 016794 226 MRPQQKMAELCQLTGVKLITYGTV 249 (382)
Q Consensus 226 ~~~~~~~l~~~~~~gi~via~spl 249 (382)
.+.-+.+.+.|+++|..+++.+|.
T Consensus 161 ~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 112347888899999988887754
No 59
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=53.42 E-value=45 Score=29.72 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccC-CcHHHHHHHHHcCCCeeeec
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 218 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn-~~~~~l~~~~~~~~~~~~~q 218 (382)
+++...+ +-+.|-.-|+..+.+=+ . ..+.++.+++++++..=-.||..+ .+.++++.+++.|-+|.
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~------~---t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi--- 84 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL------R---TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI--- 84 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC------C---CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE---
Confidence 4454443 34456667766555432 1 123555666666654335688877 47899999999886654
Q ss_pred cccccccCChhhhHHHHHHHhCCcEEE
Q 016794 219 VQHSVVDMRPQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 219 ~~~n~~~~~~~~~~l~~~~~~gi~via 245 (382)
.+ +....+++++|+++||.++.
T Consensus 85 --vs---P~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 --VS---PGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred --EC---CCCCHHHHHHHHHcCCcEEC
Confidence 23 23356999999999998874
No 60
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=53.39 E-value=2.1e+02 Score=27.33 Aligned_cols=106 Identities=11% Similarity=-0.026 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHHc-CCcEEe-CCCCcC-hHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHH
Q 016794 75 DINNAVNAMLHYVDA-GLTTFD-MADIYG-PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 151 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~-Gi~~fD-TA~~YG-~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~S 151 (382)
+.++..+++.+..+. ||+.+- |...-- .+...+.+.++....- ..+..+.+.|+... ..+..+...+-+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i---~~v~~iri~Tr~~v----~~p~rit~ell~~ 192 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAI---DHVKIVRFHTRVPV----ADPARVTPALIAA 192 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhC---CCccEEEEeCCCcc----cChhhcCHHHHHH
Confidence 456677777765544 787552 211100 0122233334333211 11212333444321 1233344444456
Q ss_pred HhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCC
Q 016794 152 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK 190 (382)
Q Consensus 152 L~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gk 190 (382)
|++.|.. ..+-+|...+... .++++++++.|++.|.
T Consensus 193 L~~~g~~--v~i~l~~~h~~el-~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 193 LKTSGKT--VYVALHANHAREL-TAEARAACARLIDAGI 228 (321)
T ss_pred HHHcCCc--EEEEecCCChhhc-CHHHHHHHHHHHHcCC
Confidence 6666632 3567777654433 5778888888888884
No 61
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=53.14 E-value=32 Score=34.82 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=43.1
Q ss_pred HhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCe--eeeccc
Q 016794 152 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV--VSNQVQ 220 (382)
Q Consensus 152 L~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~--~~~q~~ 220 (382)
-+|+.+.|+|.+- .+++|+++..++.+++|+..+||+-..-.+.++++.+.++.| ..-|..
T Consensus 194 ~kR~~~g~ld~~~--------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS 256 (546)
T PF01175_consen 194 EKRLEQGYLDEVT--------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTS 256 (546)
T ss_dssp HHHHHTTSSSEEE--------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SS
T ss_pred HHHHhCCCeeEEc--------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCc
Confidence 3566778999642 238999999999999999999999998889999999887554 445654
No 62
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=52.63 E-value=1.1e+02 Score=28.10 Aligned_cols=113 Identities=13% Similarity=0.069 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCccceeeEeeeccc-------------C-C---CC
Q 016794 74 IDINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKW-------------V-P---PP 136 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~-------------~-~---~~ 136 (382)
.+.++-.++.++|-+.||.||=|...-. +-.+ |.+..-+ -.|+.+-- + | +.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~-s~d~----l~~~~~~-------~~KIaS~dl~n~~lL~~~A~tgkPvIlST 120 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE-SVDF----LEELGVP-------AYKIASGDLTNLPLLEYIAKTGKPVILST 120 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH-HHHH----HHHHT-S-------EEEE-GGGTT-HHHHHHHHTT-S-EEEE-
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH-HHHH----HHHcCCC-------EEEeccccccCHHHHHHHHHhCCcEEEEC
Confidence 5678899999999999999997775422 2112 2222111 11221100 0 0 00
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCC-CCcHHHHHHHHHHHHHcCCccEEeccCCcHH
Q 016794 137 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTE 202 (382)
Q Consensus 137 ~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~-~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~ 202 (382)
...+-+.|.++++...+.- .-|+.++|+.... .+.-+--+..|..|++.=- --||+|.|+..
T Consensus 121 G~stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 121 GMSTLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp TT--HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred CCCCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 1235567777776653443 4789999997532 2212335667777775433 57799998764
No 63
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=52.40 E-value=2.2e+02 Score=28.98 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHH----cCCccEEecc--CCcHHHHHHHHHcC
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENG 211 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~----~Gkir~iGvS--n~~~~~l~~~~~~~ 211 (382)
.++++.|.+.++. ++..|...+-|+.=..| ....++...+++..+++ .|.++.++|+ ..+.++++++.+.|
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 4688999999986 57788766655422222 22236767777777775 5778777765 46778999999888
Q ss_pred CC-eeeecccccc-----ccCC-----h--hhhHHHHHHHhCCcEEEc
Q 016794 212 IP-VVSNQVQHSV-----VDMR-----P--QQKMAELCQLTGVKLITY 246 (382)
Q Consensus 212 ~~-~~~~q~~~n~-----~~~~-----~--~~~~l~~~~~~gi~via~ 246 (382)
+. ..++|=-||. +++. . .-..++.+++.|+.-++.
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 54 5555555542 1111 1 125788889999874443
No 64
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=52.25 E-value=62 Score=31.40 Aligned_cols=105 Identities=12% Similarity=0.153 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeec
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 218 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q 218 (382)
++.+ -+..+-+.|.++|+++|++-..-.|.. .|...+.-+.++.+++...+++.++. .+...++.+++.|.+...+-
T Consensus 65 ~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~-vPqmad~~ev~~~i~~~~~~~~~~l~-~n~~die~A~~~g~~~v~i~ 141 (347)
T PLN02746 65 VPTS-VKVELIQRLVSSGLPVVEATSFVSPKW-VPQLADAKDVMAAVRNLEGARFPVLT-PNLKGFEAAIAAGAKEVAVF 141 (347)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEECCCcCccc-ccccccHHHHHHHHHhccCCceeEEc-CCHHHHHHHHHcCcCEEEEE
Confidence 4444 445566669999999999875444432 11122233333344443345666664 48899999998764422111
Q ss_pred -------cccccccCChh------hhHHHHHHHhCCcEEEcc
Q 016794 219 -------VQHSVVDMRPQ------QKMAELCQLTGVKLITYG 247 (382)
Q Consensus 219 -------~~~n~~~~~~~------~~~l~~~~~~gi~via~s 247 (382)
...|+ +...+ .+++++++++|+.+.++-
T Consensus 142 ~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 142 ASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred EecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 12222 11111 368899999999885433
No 65
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=52.07 E-value=2e+02 Score=26.60 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceE-EEecCCCCCCcHH-H---HHHHHHHHHHc-CCccEEeccCCcHHHHHHHHHcCC
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDML-QFHWWDYSNPGYL-D---ALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGI 212 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~-~lH~p~~~~~~~~-e---~~~aL~~l~~~-Gkir~iGvSn~~~~~l~~~~~~~~ 212 (382)
.+++.+.+.+++-+ .-|.++||+= .--+|+......+ | ....++.+++. +. -+.+-++.++.++++++.|.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 46666666655543 5589999993 1123433211122 2 55566666665 43 48888999999999998875
Q ss_pred CeeeeccccccccCChhhhHHHHHHHhCCcEEEcc
Q 016794 213 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 247 (382)
Q Consensus 213 ~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~s 247 (382)
++ +|-+ +... ..++++.+++.|..++.+.
T Consensus 97 ~i-INsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DI-INDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CE-EEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 42 2222 2221 3478899999999999854
No 66
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=50.40 E-value=99 Score=27.87 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=58.8
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEe-CCCCc-C---hHHHHHHHHHhhhhhcCCccceeeEeeecccCCC-CCCCCHHHHH
Q 016794 72 GKIDINNAVNAMLHYVDAGLTTFD-MADIY-G---PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP-PVKMTSSIVR 145 (382)
Q Consensus 72 ~~~~~~~~~~~l~~A~~~Gi~~fD-TA~~Y-G---~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~-~~~~~~~~i~ 145 (382)
|..+.++..++++.|.+.||+-+= |+.++ | +++..+-+.+.++.. +..+..+--++.|+ +...+.+.+.
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~-----~~~~~aidl~v~pGQEIrIt~~vl~ 89 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNE-----ILKKEAIDLKVLPGQEIRITGDVLD 89 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHH-----HHHhhcCCceeccCceEEEchHHHH
Confidence 455789999999999999999665 44444 2 355555555544211 00000011112222 1223333332
Q ss_pred HHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEE
Q 016794 146 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 194 (382)
Q Consensus 146 ~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~i 194 (382)
.--+..+--+. --+.+++..|-...+ +.+-+.|-+|.-.|-+=-|
T Consensus 90 ~l~~g~I~tin--dskYlLIEF~~~~v~--~ya~~lf~elq~kGi~PII 134 (254)
T COG4464 90 DLDKGIILTIN--DSKYLLIEFPMNHVP--RYADQLFFELQSKGIIPII 134 (254)
T ss_pred HHhcCcccccc--ccceEEEEccCCcch--hhHHHHHHHHHHCCceeee
Confidence 22222222222 236677777665544 4466667777777765444
No 67
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=50.25 E-value=39 Score=29.96 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=33.3
Q ss_pred cEEeccC-CcHHHHHHHHHcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEE
Q 016794 192 KTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 192 r~iGvSn-~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via 245 (382)
-.||..+ .+.++++++++.|..|.+ + +....+++++|+++||.++-
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA~Fiv-----S---P~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGAQFIV-----S---PGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT-SEEE-----E---SS--HHHHHHHHHHTSEEEE
T ss_pred CeeEEEeccCHHHHHHHHHcCCCEEE-----C---CCCCHHHHHHHHHcCCcccC
Confidence 4688877 478999999998866543 2 33456999999999999883
No 68
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.19 E-value=2.8e+02 Score=27.85 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCcEEe--------CCCCcCh------HHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHH
Q 016794 77 NNAVNAMLHYVDAGLTTFD--------MADIYGP------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSS 142 (382)
Q Consensus 77 ~~~~~~l~~A~~~Gi~~fD--------TA~~YG~------sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~ 142 (382)
....++++.|+|+|.-=+- |+..|-+ .+++.+.++.-..... -++-+ ... .-...
T Consensus 182 aaMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~ag~--~iLqs---t~d------~~ega 250 (579)
T COG3653 182 AAMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVARAGG--RILQS---THD------RDEGA 250 (579)
T ss_pred HHHHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHHhcC--ceeEe---ecc------ccchH
Confidence 3467888999999866555 6666632 3445555554222111 11111 111 12344
Q ss_pred HHHHHHHHHHhhcC-CCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeecccc
Q 016794 143 IVRESIDVSRRRMD-VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 221 (382)
Q Consensus 143 ~i~~~~e~SL~~Lg-~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~ 221 (382)
.+.+.++++-+.-+ ---+-+.+.|.-+. .-..+|++.+....++++.-.|.++-+.-.+|
T Consensus 251 a~L~~l~~a~ri~~R~~~vr~v~s~~a~a-------------------g~~n~~~a~~~lgl~~kaq~~G~pVg~~~~p~ 311 (579)
T COG3653 251 AALEALLEASRIGNRRKGVRMVMSHSADA-------------------GSMNWGVAVFGLGLIEKAQLLGSPVGFDHYPY 311 (579)
T ss_pred HHHHHHHHHHHhcCcccCceEEEeccccc-------------------cccchhhhhhccchHHHHHHhCCcceeeeccc
Confidence 55566666655552 33466777776432 22357777777777777766664443333333
Q ss_pred ccccCChhhhHHHHHHHhCCc
Q 016794 222 SVVDMRPQQKMAELCQLTGVK 242 (382)
Q Consensus 222 n~~~~~~~~~~l~~~~~~gi~ 242 (382)
.. +...+.-++++.++.|.+
T Consensus 312 ~a-~~ys~~~~~p~~~e~g~~ 331 (579)
T COG3653 312 TA-ELYSDGIDLPVFEEFGAG 331 (579)
T ss_pred cc-chhccCCcchhhhhcccc
Confidence 33 222333455666666653
No 69
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=49.74 E-value=2.4e+02 Score=26.86 Aligned_cols=155 Identities=9% Similarity=0.101 Sum_probs=79.4
Q ss_pred CCChHHHHHHHHHHHHcCCcEEeCCCCcCh---HHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHH
Q 016794 73 KIDINNAVNAMLHYVDAGLTTFDMADIYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 149 (382)
Q Consensus 73 ~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~---sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e 149 (382)
.++.++..+++..+.+.|++.|.-.. |. ... +-+.++...... . ...+.+.|.. ..+.+. -
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~-l~~li~~i~~~~--~-~~~i~itTNG---------~ll~~~-~ 111 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKD-LEDIIAALAALP--G-IRDLALTTNG---------YLLARR-A 111 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccC-HHHHHHHHHhcC--C-CceEEEEcCc---------hhHHHH-H
Confidence 35778999999999999998876432 32 111 223333322110 0 0122233321 012222 2
Q ss_pred HHHhhcCCCCcceEEEecCCCC-------CCcHHHHHHHHHHHHHcCC----ccEEeccCCcHHHHHHHHHc--CCCeee
Q 016794 150 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILEN--GIPVVS 216 (382)
Q Consensus 150 ~SL~~Lg~d~iDl~~lH~p~~~-------~~~~~e~~~aL~~l~~~Gk----ir~iGvSn~~~~~l~~~~~~--~~~~~~ 216 (382)
..|+..|++.+- +-||..++. ...+++++++++.+++.|. |..+.+.+.+.+++.++++. ...+.+
T Consensus 112 ~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 112 AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 335555655443 334444321 1237899999999999986 23444445566666665541 222333
Q ss_pred eccccccccCC---------hhhhHHHHHHHhCCcEE
Q 016794 217 NQVQHSVVDMR---------PQQKMAELCQLTGVKLI 244 (382)
Q Consensus 217 ~q~~~n~~~~~---------~~~~~l~~~~~~gi~vi 244 (382)
.-++|.++... ...++++.+++.|+.+.
T Consensus 191 ~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 191 RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 33444443221 12467788888765543
No 70
>PRK07945 hypothetical protein; Provisional
Probab=48.50 E-value=2.6e+02 Score=26.94 Aligned_cols=152 Identities=12% Similarity=0.045 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCcEEeCCCCc-------ChHHHHHHHHH---hhhhhcCCccceeeEeeecccCCCCCCCCHHHHHH
Q 016794 77 NNAVNAMLHYVDAGLTTFDMADIY-------GPAEDLYGIFI---NRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 146 (382)
Q Consensus 77 ~~~~~~l~~A~~~Gi~~fDTA~~Y-------G~sE~~lG~al---~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~ 146 (382)
....+++..|.+.|+..+=.+++. +.+...+-+.+ ++.++... .+.+-..+-..+.+. ...+...+
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~-~I~Il~GiE~d~~~~---g~~~~~~~ 186 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELA-PFRILTGIEVDILDD---GSLDQEPE 186 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEEeEecccCC---CCcchhHH
Confidence 457899999999999987544442 11111122222 22222211 222211111222221 12222222
Q ss_pred HHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccC---------------CcHHH-HHHHHHc
Q 016794 147 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------------FDTER-LRIILEN 210 (382)
Q Consensus 147 ~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn---------------~~~~~-l~~~~~~ 210 (382)
.|+. .||+ +.-+|...... .++..+.|.++.+.|++..+|=-. +..+. ++.+.+.
T Consensus 187 ----~l~~--~D~v-IgSvH~~~~~~--~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~ 257 (335)
T PRK07945 187 ----LLDR--LDVV-VASVHSKLRMD--AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREH 257 (335)
T ss_pred ----HHHh--CCEE-EEEeecCCCCC--HHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHh
Confidence 2332 4555 56678764322 456678888888899998888431 11122 3444456
Q ss_pred CCCeeeeccccccccCChhhhHHHHHHHhCCcEE
Q 016794 211 GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLI 244 (382)
Q Consensus 211 ~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~vi 244 (382)
+..+.+|--... ..+...++..|++.|+.++
T Consensus 258 g~~lEINt~~~r---~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 258 GTAVEINSRPER---RDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred CCEEEEeCCCCC---CCChHHHHHHHHHcCCeEE
Confidence 666666643332 3455689999999998764
No 71
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=47.74 E-value=2.3e+02 Score=26.15 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEE-EecCCCCCCcHH----HHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCC
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYL----DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 213 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~-lH~p~~~~~~~~----e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~ 213 (382)
++.+.+.+..++-+ +-|-|.||+=. --+|+......+ .....++.+++.-.+- +.|-++.++.++++++.|.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 45555555555443 45889999853 234543321122 3444456666653443 78889999999999988743
Q ss_pred eeeeccccccccCChhhhHHHHHHHhCCcEEEcc
Q 016794 214 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 247 (382)
Q Consensus 214 ~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~s 247 (382)
+ +| ..+..+.. ..+++.++++|..++.+.
T Consensus 99 i-IN--disg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 I-IN--DVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred E-EE--eCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 2 22 12322111 478999999999999854
No 72
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=47.15 E-value=1.5e+02 Score=27.13 Aligned_cols=99 Identities=9% Similarity=0.055 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcC-CccEEeccCCcHHHHHHHHHcCCCeee
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 216 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-kir~iGvSn~~~~~l~~~~~~~~~~~~ 216 (382)
.++.+.. ..+-+.|.++|+++|++-+ |.. -+.-++.++++.+.+ .++..+++....+.++.+.+.|.+..-
T Consensus 16 ~~~~~~k-~~i~~~L~~~Gv~~iE~g~---p~~----~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~ 87 (259)
T cd07939 16 AFSREEK-LAIARALDEAGVDEIEVGI---PAM----GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVH 87 (259)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEec---CCC----CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEE
Confidence 4555544 4455559999999999852 321 123356677777643 477778887788889888887644222
Q ss_pred eccccccc------cCChh------hhHHHHHHHhCCcEE
Q 016794 217 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLI 244 (382)
Q Consensus 217 ~q~~~n~~------~~~~~------~~~l~~~~~~gi~vi 244 (382)
+-+..|.. +...+ .+.+++|+++|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 21111111 11111 367889999998765
No 73
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=47.01 E-value=1.3e+02 Score=26.64 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC------hHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHH
Q 016794 74 IDINNAVNAMLHYVDAGLTTFDMADIYG------PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 147 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~~Gi~~fDTA~~YG------~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~ 147 (382)
.++++...+.+.|.+.|..|+=|+..|. ..-+.+.+.++ . .+-++..++-| +.+.+.+-
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~---~v~ik~aGGik--------t~~~~l~~ 192 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----G---RVGVKAAGGIR--------TLEDALAM 192 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----C---CceEEEeCCCC--------CHHHHHHH
Confidence 4567888888899999999999998886 23234444443 1 12122222211 56777777
Q ss_pred HHHHHhhcCC
Q 016794 148 IDVSRRRMDV 157 (382)
Q Consensus 148 ~e~SL~~Lg~ 157 (382)
++.--.|+|+
T Consensus 193 ~~~g~~riG~ 202 (203)
T cd00959 193 IEAGATRIGT 202 (203)
T ss_pred HHhChhhccC
Confidence 7777777775
No 74
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.71 E-value=60 Score=29.10 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCC---ccEEeccC-CcHHHHHHHHHcCCCee
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTN-FDTERLRIILENGIPVV 215 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gk---ir~iGvSn-~~~~~l~~~~~~~~~~~ 215 (382)
+++....- -+.|-.-|+.-+.+=+ .. ...++++++++++-. =-.||..+ .+.++++.+++.|-.|.
T Consensus 23 ~~~~a~~~-~~al~~~Gi~~iEit~------~~---~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALKI-SLAVIKGGIKAIEVTY------TN---PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEEC------CC---ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 44544443 3445566766555432 12 224556666655421 13588776 47899999999886664
Q ss_pred eeccccccccCChhhhHHHHHHHhCCcEE
Q 016794 216 SNQVQHSVVDMRPQQKMAELCQLTGVKLI 244 (382)
Q Consensus 216 ~~q~~~n~~~~~~~~~~l~~~~~~gi~vi 244 (382)
+ + +....+++++|+++||.++
T Consensus 93 v-----s---P~~~~~v~~~~~~~~i~~i 113 (213)
T PRK06552 93 V-----S---PSFNRETAKICNLYQIPYL 113 (213)
T ss_pred E-----C---CCCCHHHHHHHHHcCCCEE
Confidence 3 3 3345689999999999988
No 75
>PRK07328 histidinol-phosphatase; Provisional
Probab=46.23 E-value=2.4e+02 Score=25.98 Aligned_cols=99 Identities=12% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcCCCCcceEEEecCCCCC------------CcHHHHHH----HHHHHHHcCCccEEeccCC-------c-
Q 016794 145 RESIDVSRRRMDVPCLDMLQFHWWDYSN------------PGYLDALN----HLTDLKEEGKIKTVALTNF-------D- 200 (382)
Q Consensus 145 ~~~~e~SL~~Lg~d~iDl~~lH~p~~~~------------~~~~e~~~----aL~~l~~~Gkir~iGvSn~-------~- 200 (382)
...+++.|++...||+ +.-+|..+... ...++.++ .+.++.+.|.+..+|=-.. .
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~ 172 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPR 172 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCc
Confidence 3444556666666766 66779754210 11233333 5777888999988884432 0
Q ss_pred -------HHHHHHHHHcCCCeeeeccc--cccccCChhhhHHHHHHHhCCcEE
Q 016794 201 -------TERLRIILENGIPVVSNQVQ--HSVVDMRPQQKMAELCQLTGVKLI 244 (382)
Q Consensus 201 -------~~~l~~~~~~~~~~~~~q~~--~n~~~~~~~~~~l~~~~~~gi~vi 244 (382)
.+.++.+.+.|..+.+|-.. +..-+..+...++..|++.|+.++
T Consensus 173 ~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~it 225 (269)
T PRK07328 173 EDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVV 225 (269)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEE
Confidence 12233344456556665532 222223445689999999998864
No 76
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=46.16 E-value=3.4e+02 Score=27.66 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHhhcCC
Q 016794 140 TSSIVRESIDVSRRRMDV 157 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~ 157 (382)
+++.|.+.++...++.|+
T Consensus 223 s~e~Vv~Ei~~l~~~~gv 240 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGV 240 (497)
T ss_pred CHHHHHHHHHHHHHHcCC
Confidence 445555555555555543
No 77
>PRK13753 dihydropteroate synthase; Provisional
Probab=45.85 E-value=2.6e+02 Score=26.25 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEE-ecCCCCCCc----HHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCC
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 213 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~l-H~p~~~~~~----~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~ 213 (382)
++++.+.+..++.+ .-|.|-||+=-- .+|...... ++.+...++.+++.+. -|.|-++.++.++++++.|..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 46666666666643 457777777542 335433211 2334467778887753 489999999999999998865
Q ss_pred eeeeccccccccCChhhhHHHHHHHhCCcEEEcccc
Q 016794 214 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 249 (382)
Q Consensus 214 ~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl 249 (382)
+.- ..+-+ ....+.+.+.+.+++++.+--.
T Consensus 99 iIN---DVsg~---~d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 99 YLN---DIQGF---PDPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred EEE---eCCCC---CchHHHHHHHHcCCCEEEEecC
Confidence 421 11222 2346788888999998876644
No 78
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=45.79 E-value=2.6e+02 Score=26.14 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEeC----------CCCcChHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHH
Q 016794 75 DINNAVNAMLHYVDAGLTTFDM----------ADIYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIV 144 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDT----------A~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i 144 (382)
+.++..+..+.+.+.|+..||- ...|+.+.+.+-+.++.....- .+-+ .-|+.+. . +.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv----~vKl~~~---~--~~~ 168 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPV----IVKLTPN---V--TDI 168 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCE----EEEeCCC---c--hhH
Confidence 4577788888888899999985 2345555566666666654321 1222 2333332 1 122
Q ss_pred HHHHHHHHhhcCCCCcceEE------EecCCCC-----------CC-cHHHHHHHHHHHHHcCCccEEeccCC-cHHHHH
Q 016794 145 RESIDVSRRRMDVPCLDMLQ------FHWWDYS-----------NP-GYLDALNHLTDLKEEGKIKTVALTNF-DTERLR 205 (382)
Q Consensus 145 ~~~~e~SL~~Lg~d~iDl~~------lH~p~~~-----------~~-~~~e~~~aL~~l~~~Gkir~iGvSn~-~~~~l~ 205 (382)
. .+-+.++..|.|.|++.= +|.-... .+ ...-.++.+.++++.=.|--||+... +++.+.
T Consensus 169 ~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~ 247 (296)
T cd04740 169 V-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDAL 247 (296)
T ss_pred H-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 2 223456678887776531 1110000 00 01125677777777667889999886 789999
Q ss_pred HHHHcCCCeeeeccccccc-cCC----hhhhHHHHHHHhCC
Q 016794 206 IILENGIPVVSNQVQHSVV-DMR----PQQKMAELCQLTGV 241 (382)
Q Consensus 206 ~~~~~~~~~~~~q~~~n~~-~~~----~~~~~l~~~~~~gi 241 (382)
+++..| .+.+|+-=.++ ++. ..+++.++.+++|.
T Consensus 248 ~~l~~G--Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 248 EFLMAG--ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHcC--CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 998877 46666542222 111 12456666666664
No 79
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=45.62 E-value=1.3e+02 Score=27.82 Aligned_cols=78 Identities=12% Similarity=-0.016 Sum_probs=49.8
Q ss_pred CChH-HHHHHHHHHHHcCCcEEeCCCCcCh----HH--HHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHH
Q 016794 74 IDIN-NAVNAMLHYVDAGLTTFDMADIYGP----AE--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 146 (382)
Q Consensus 74 ~~~~-~~~~~l~~A~~~Gi~~fDTA~~YG~----sE--~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~ 146 (382)
.+++ +...+.+.|.+.|..|+=|+..|+. -| +++-+.+++.... . .+ .+ |...+ -.+.+....
T Consensus 143 L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~-~-~v--gI----KAsGG--Irt~~~A~~ 212 (257)
T PRK05283 143 LKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVA-K-TV--GF----KPAGG--VRTAEDAAQ 212 (257)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccC-C-Ce--eE----EccCC--CCCHHHHHH
Confidence 4556 4778888999999999999999963 22 2333333321100 0 11 12 22222 236788999
Q ss_pred HHHHHHhhcCCCCcc
Q 016794 147 SIDVSRRRMDVPCLD 161 (382)
Q Consensus 147 ~~e~SL~~Lg~d~iD 161 (382)
-++.--+.||.+|++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 999999999998776
No 80
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=45.04 E-value=2.5e+02 Score=25.79 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEE-EecCCCCC----CcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCC
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSN----PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 213 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~-lH~p~~~~----~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~ 213 (382)
.+++.+.+..++.+ .-|-|.||+=- --+|+... ...+.....++.+++.-.+ -|.|-++.++.++++++.+.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 46666666655543 56889999863 23343211 1123455666666655333 388899999999999988733
Q ss_pred eeeeccccccccCChhhhHHHHHHHhCCcEEEccc
Q 016794 214 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 248 (382)
Q Consensus 214 ~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~sp 248 (382)
+ +| ..+..+. ...+++.+++.|..++.+..
T Consensus 99 i-IN--dis~~~~--~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 I-IN--DVSGGRG--DPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred E-EE--eCCCCCC--ChHHHHHHHHcCCCEEEECc
Confidence 2 11 1222211 15789999999999988653
No 81
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=44.93 E-value=1.3e+02 Score=29.27 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=59.8
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 237 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 237 (382)
+++.++-.|-+. +-++.+.+|++...+. ..|=|-++...+..+++.+ .++++|......-. ..-..+.+.|+
T Consensus 189 ~~l~~iEeP~~~-----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~-a~di~~~d~~~~GGit~~~~ia~~A~ 262 (361)
T cd03322 189 YRLFWMEDPTPA-----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER-LIDYIRTTVSHAGGITPARKIADLAS 262 (361)
T ss_pred cCCCEEECCCCc-----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 567777766432 2367788888887776 6677778999999998865 47888887664321 12347899999
Q ss_pred HhCCcEEEccc
Q 016794 238 LTGVKLITYGT 248 (382)
Q Consensus 238 ~~gi~via~sp 248 (382)
++|+.++.++.
T Consensus 263 ~~gi~~~~h~~ 273 (361)
T cd03322 263 LYGVRTGWHGP 273 (361)
T ss_pred HcCCeeeccCC
Confidence 99999987543
No 82
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=44.62 E-value=1e+02 Score=28.16 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcC
Q 016794 137 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 211 (382)
Q Consensus 137 ~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~ 211 (382)
...+.+.-.....-+.+-+++++|-|=.+-.+..-.|+..|++++-|.|+++|-+-. =-++-++-..+++.+.|
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl-PY~~dD~v~arrLee~G 151 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL-PYTTDDPVLARRLEEAG 151 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEe-eccCCCHHHHHHHHhcC
Confidence 466888888888889999999999998888777767778999999999999996532 22333444445555543
No 83
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=43.86 E-value=2.9e+02 Score=26.27 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEeC----------CCCcC----hHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCC
Q 016794 75 DINNAVNAMLHYVDAGLTTFDM----------ADIYG----PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMT 140 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDT----------A~~YG----~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~ 140 (382)
+.++..+....+.+.|+..||- ...+| +.-+++.+.++.....-...+-+++|+...+. +
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------~ 146 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------S 146 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------C
Confidence 6677777778888899999992 12223 12334555555543221002334444432111 1
Q ss_pred HHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHH-H--HHHHHHHHHHcCCccEEeccCC-cHHHHHHHHHcCCCeee
Q 016794 141 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYL-D--ALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVS 216 (382)
Q Consensus 141 ~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~-e--~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~~~~~~~~ 216 (382)
.+.. ..+-+.|+..| +|.+-+|.-..... .. . -|+...++++.-.|--||.... +++.++++++.+ .++.
T Consensus 147 ~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~-y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~-g~Dg 220 (312)
T PRK10550 147 GERK-FEIADAVQQAG---ATELVVHGRTKEDG-YRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAIT-GCDA 220 (312)
T ss_pred chHH-HHHHHHHHhcC---CCEEEECCCCCccC-CCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhcc-CCCE
Confidence 1222 34555567777 56777786432211 11 1 3677777887777888887764 677777777532 3555
Q ss_pred eccc
Q 016794 217 NQVQ 220 (382)
Q Consensus 217 ~q~~ 220 (382)
+++-
T Consensus 221 VmiG 224 (312)
T PRK10550 221 VMIG 224 (312)
T ss_pred EEEc
Confidence 5554
No 84
>PRK06424 transcription factor; Provisional
Probab=43.71 E-value=64 Score=27.07 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q 016794 294 QVLLQTLKRIASKHGVSIPVVAVRYILDQ 322 (382)
Q Consensus 294 ~~~~~~l~~ia~~~g~s~aqlaL~w~l~~ 322 (382)
..+-+.|+.+-++.|+|..++|-+--.+.
T Consensus 83 ~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~ 111 (144)
T PRK06424 83 EDYAELVKNARERLSMSQADLAAKIFERK 111 (144)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCH
Confidence 34456788888889999999886554443
No 85
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=43.43 E-value=53 Score=29.61 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCccEEec----cCCcHHHHHHHHHc-CCCeeeeccccccccCChhhhHHHHHHHhCCcEEEcccc
Q 016794 175 YLDALNHLTDLKEEGKIKTVAL----TNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 249 (382)
Q Consensus 175 ~~e~~~aL~~l~~~Gkir~iGv----Sn~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl 249 (382)
+++..++|..|+ +.+|.. |.+-...++.+++. |.. .|.|+....+++++...-+.|..++.-+.-
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 677777888777 555543 34455666666653 432 345665556668888888888888877777
Q ss_pred cccccCccccCCCCCCCCCCCCCCCchhHHhHhhhhccCCchhHHHHHHHHHHHHHHcCCCHH
Q 016794 250 MGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 312 (382)
Q Consensus 250 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~a 312 (382)
+.|+-.. + -|.+ ...+.++.|+.++++||+.|+
T Consensus 145 a~gL~~~-~---------lGr~--------------------i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 145 AEGLDES-W---------LGRR--------------------IDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ccCCChH-H---------hCCc--------------------cCHHHHHHHHHHHHhcCCCcc
Confidence 7775210 0 0111 122445889999999998763
No 86
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=42.93 E-value=1.4e+02 Score=28.99 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHHHhCCcEEEcccccc
Q 016794 178 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 178 ~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~spl~~ 251 (382)
.++.+.+|+++..|. +.|=|-++...+..+++.+ -++++|+.....-. ..-..+...|+++|+.++..+-..+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 467778888776665 5566677888888888765 36667776443211 1234788999999999886543333
No 87
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=42.89 E-value=2.3e+02 Score=25.92 Aligned_cols=20 Identities=0% Similarity=-0.044 Sum_probs=16.0
Q ss_pred hHHHHHHHhCCcEEEccccc
Q 016794 231 KMAELCQLTGVKLITYGTVM 250 (382)
Q Consensus 231 ~~l~~~~~~gi~via~spl~ 250 (382)
..++.|+..|...+...|..
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~ 113 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAH 113 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCC
Confidence 57889999999998776643
No 88
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=42.75 E-value=1.3e+02 Score=28.80 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=20.3
Q ss_pred eCCCCCcHhHHHHHhhhhcC-CCCHHHHHHHHH
Q 016794 330 IGVRLGLAEHIQDTNAIFML-SLDEDDVNSIQE 361 (382)
Q Consensus 330 ~G~~s~~~~~l~en~~~~~~-~L~~e~~~~l~~ 361 (382)
.|..+ +..+...++++.. -.++++++.|-.
T Consensus 270 ~gled--~~~l~~l~~~L~~~G~~e~~i~~i~~ 300 (313)
T COG2355 270 DGLED--VGKLPNLTAALIERGYSEEEIEKIAG 300 (313)
T ss_pred hhhcC--hhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45555 6777777776654 488888877653
No 89
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=42.34 E-value=1.9e+02 Score=28.62 Aligned_cols=84 Identities=7% Similarity=0.014 Sum_probs=58.8
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 237 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 237 (382)
.++.++-.|-+. +.++.+.+|++.-.|. ..|=|-++...++.+++.+ -++++|....-.-. ..-..+...|+
T Consensus 232 ~~l~~iEeP~~~-----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~-a~dii~~d~~~~GGit~~~kia~lA~ 305 (404)
T PRK15072 232 YRLFWLEDPTPA-----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ-LIDYIRTTVTHAGGITHLRRIADFAA 305 (404)
T ss_pred cCCcEEECCCCc-----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC-CCCEEecCccccCcHHHHHHHHHHHH
Confidence 466666665432 2367788888887666 6677778999999998865 47888877654311 12347889999
Q ss_pred HhCCcEEEcccc
Q 016794 238 LTGVKLITYGTV 249 (382)
Q Consensus 238 ~~gi~via~spl 249 (382)
.+|+.++.++..
T Consensus 306 ~~gi~~~~h~~~ 317 (404)
T PRK15072 306 LYQVRTGSHGPT 317 (404)
T ss_pred HcCCceeeccCc
Confidence 999999876543
No 90
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=41.45 E-value=2.7e+02 Score=27.47 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=56.3
Q ss_pred ceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHHHh
Q 016794 161 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLT 239 (382)
Q Consensus 161 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~ 239 (382)
|-+++..|. ...++..+..+.+.+.++.+-+...+.+.+++++....+..++..+-|+.-. ..-..+.+.|+++
T Consensus 100 D~Vvv~~p~-----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~ 174 (405)
T PRK08776 100 DTLVVPHDA-----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV 174 (405)
T ss_pred CEEEEccCC-----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHc
Confidence 556664443 3445556666655566776666666778888777544456666667776432 2335789999999
Q ss_pred CCcEEEccccccc
Q 016794 240 GVKLITYGTVMGG 252 (382)
Q Consensus 240 gi~via~spl~~G 252 (382)
|+.++.=...+.+
T Consensus 175 gi~vIvD~a~a~~ 187 (405)
T PRK08776 175 GALTVVDNTFLSP 187 (405)
T ss_pred CCEEEEECCCccc
Confidence 9999876665544
No 91
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.29 E-value=1.6e+02 Score=27.24 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEeccCCcHHHHHHHHHcCCCeee
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 216 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gk-ir~iGvSn~~~~~l~~~~~~~~~~~~ 216 (382)
.++.+...+ +-+.|.++|++.|.+-. |.. ..+.+++.+.+.+.++ .+..+....+.+.++.+.+.|.+...
T Consensus 18 ~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~----~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIE-IAKALDAFGVDYIELTS---PAA----SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEEC---CCC----CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence 456555444 44459999988888763 433 2334555555554443 44466667788899999987754322
Q ss_pred ecccccc------ccCChh------hhHHHHHHHhCCcEEEcc
Q 016794 217 NQVQHSV------VDMRPQ------QKMAELCQLTGVKLITYG 247 (382)
Q Consensus 217 ~q~~~n~------~~~~~~------~~~l~~~~~~gi~via~s 247 (382)
+-+..|. +....+ .+.+.++++.|+.+...-
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 2221111 111111 357788999998766543
No 92
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=41.16 E-value=2e+02 Score=28.01 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=55.8
Q ss_pred EEEecCCCC----------CCcHHHHHHHHHHHHH-cCC---ccEEecc--CCcHHHHHHHHH--cCCCeeeeccccccc
Q 016794 163 LQFHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVV 224 (382)
Q Consensus 163 ~~lH~p~~~----------~~~~~e~~~aL~~l~~-~Gk---ir~iGvS--n~~~~~l~~~~~--~~~~~~~~q~~~n~~ 224 (382)
+-||.+++. ...++++++++.+..+ .|+ |+++=+. |.+.+++.++.+ .+.++.++-++||++
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668988732 1126888888887654 442 3343333 445677777665 245677788899986
Q ss_pred cCC----hh----hhHHHHHHHhCCcEEEcccccc
Q 016794 225 DMR----PQ----QKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 225 ~~~----~~----~~~l~~~~~~gi~via~spl~~ 251 (382)
... +. ..+.++.+++|+.+......+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 421 11 2456677788999988776654
No 93
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=41.12 E-value=2.5e+02 Score=27.08 Aligned_cols=106 Identities=12% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCcceE--------EEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCC-cHHHHHHH
Q 016794 137 VKMTSSIVRESIDVSRRRMDVPCLDML--------QFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRII 207 (382)
Q Consensus 137 ~~~~~~~i~~~~e~SL~~Lg~d~iDl~--------~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~ 207 (382)
..++.+.+.+-++. |.+.|+++|.+- -++.-....+ -.+.++++.+..+.-++..+-+.+. +.+.++.+
T Consensus 19 ~~f~~~~~~~ia~~-Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~-~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVRAIAAA-LDEAGVDAIEVTHGDGLGGSSFNYGFSAHT-DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCCccccCCCCCCC-hHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Q ss_pred HHcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEc
Q 016794 208 LENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 246 (382)
Q Consensus 208 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~ 246 (382)
.+.| ++.+.+-.+.-+-..-.+.++++++.|..+...
T Consensus 97 ~~~g--vd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 97 YDAG--ARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHCC--CCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
No 94
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=41.03 E-value=74 Score=28.36 Aligned_cols=67 Identities=13% Similarity=0.273 Sum_probs=43.1
Q ss_pred HhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEecc-CCcHHHHHHHHHcCCCeeeeccccc
Q 016794 152 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 222 (382)
Q Consensus 152 L~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvS-n~~~~~l~~~~~~~~~~~~~q~~~n 222 (382)
...+|.||+=+.+... .+... ..+....+.+.. .+.++.+||. |-+++.+.++.+. ..++++|+.-+
T Consensus 17 ~~~~GaD~iGfIf~~~-SpR~V-~~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEK-SKRHQ-TITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-TSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCC-CcccC-CHHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-CCCCEEEECCC
Confidence 3459999999874332 22212 133444444433 3568899996 7788999888864 46899998754
No 95
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.90 E-value=2.3e+02 Score=27.31 Aligned_cols=107 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCcceE--------EEecCCCCCCcHHHHHHHHHHHHHcCCccEEec-cCCcHHHHHH
Q 016794 136 PVKMTSSIVRESIDVSRRRMDVPCLDML--------QFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL-TNFDTERLRI 206 (382)
Q Consensus 136 ~~~~~~~~i~~~~e~SL~~Lg~d~iDl~--------~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGv-Sn~~~~~l~~ 206 (382)
...++.+.+.+-++. |.+.|+++|.+- -++.-....+ ..+.++++.+....-++..+-+ ...+.+.++.
T Consensus 19 ~~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~-~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 19 RHQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGFGAHT-DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CCccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCCCCCC-HHHHHHHHHHhCCCCEEEEEeccCcccHHHHHH
Q ss_pred HHHcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEEc
Q 016794 207 ILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 246 (382)
Q Consensus 207 ~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~ 246 (382)
+.+.| ++.+.+..+.-+...-.+.+++++++|..+...
T Consensus 97 a~~~g--vd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDAG--VRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHcC--CCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
No 96
>PRK02399 hypothetical protein; Provisional
Probab=40.83 E-value=66 Score=31.81 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHH
Q 016794 147 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 204 (382)
Q Consensus 147 ~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l 204 (382)
+++...++|.-...|.+.+|.-... =++||+|.++|.+.. |=..+..++
T Consensus 200 ~v~~~~~~Le~~GyEvlVFHATG~G-------GraME~Li~~G~~~g--VlDlTttEv 248 (406)
T PRK02399 200 CVQAAREELEARGYEVLVFHATGTG-------GRAMEKLIDSGLIAG--VLDLTTTEV 248 (406)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCCCc-------hHHHHHHHHcCCceE--EEEcchHHH
Confidence 3334444444344799999985432 257999999999764 334444333
No 97
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=40.72 E-value=3e+02 Score=25.47 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHc--CCCeeee
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN 217 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~--~~~~~~~ 217 (382)
+.+.+.+..++- ..-|-|+||+=.- +..... .+.....++.+++.-.+ -|-|-+++++.++++++. |.++ +|
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE-~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~i-IN 96 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEE-PETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPL-IN 96 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhH-HHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCE-EE
Confidence 445555544443 3568899998542 111111 33455555556544222 378889999999999986 5332 22
Q ss_pred ccccccccCChhhhHHHHHHHhCCcEEEcc
Q 016794 218 QVQHSVVDMRPQQKMAELCQLTGVKLITYG 247 (382)
Q Consensus 218 q~~~n~~~~~~~~~~l~~~~~~gi~via~s 247 (382)
=+ |..+ .....+++.+++.|+.++...
T Consensus 97 sI--s~~~-~~~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 97 SV--SAEG-EKLEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred eC--CCCC-ccCHHHHHHHHHhCCCEEEEe
Confidence 22 2211 113478889999999988754
No 98
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=40.20 E-value=3.4e+02 Score=25.90 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHHcCCcEEeCCCCcChHHHH----HHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHH
Q 016794 73 KIDINNAVNAMLHYVDAGLTTFDMADIYGPAEDL----YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 148 (382)
Q Consensus 73 ~~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~----lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~ 148 (382)
.++.++..++++.+.+.|+..|--.. | |.+ +-+.++..... . . +..+.+.|.. ..+.+ .
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tG--G--EPllr~dl~~li~~i~~~-~-~-l~~i~itTNG---------~ll~~-~ 106 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTG--G--EPLVRRGCDQLVARLGKL-P-G-LEELSLTTNG---------SRLAR-F 106 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--c--CCCccccHHHHHHHHHhC-C-C-CceEEEEeCh---------hHHHH-H
Confidence 35778899999999999998775332 3 211 11222222111 0 1 1122233321 11222 3
Q ss_pred HHHHhhcCCCCcceEEEecCCCC-------CCcHHHHHHHHHHHHHcCC
Q 016794 149 DVSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK 190 (382)
Q Consensus 149 e~SL~~Lg~d~iDl~~lH~p~~~-------~~~~~e~~~aL~~l~~~Gk 190 (382)
-+.|+..|++++- +-|+..++. ...++.++++++.+++.|.
T Consensus 107 ~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 107 AAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 4456667777665 344544321 1225677777777777764
No 99
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.05 E-value=2.9e+02 Score=25.14 Aligned_cols=83 Identities=7% Similarity=-0.013 Sum_probs=44.1
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccC-CcHHHHHHHHHc-CCCeeeeccccccccCChhhhHHHHHH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQ 237 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn-~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~l~~~~ 237 (382)
+|-+.+|..+.......--|+.+.++.+.-.+.-|.-.. .+.+.+.++.+. |..-.++-.-++-- .-...+++++|+
T Consensus 167 ~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~-~~~~~~~~~~~~ 245 (253)
T PRK02083 167 AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG-EITIGELKAYLA 245 (253)
T ss_pred CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC-CCCHHHHHHHHH
Confidence 566677765432110011356666666655566665443 356778777753 54322221111111 122347889999
Q ss_pred HhCCcE
Q 016794 238 LTGVKL 243 (382)
Q Consensus 238 ~~gi~v 243 (382)
+.||.+
T Consensus 246 ~~~~~~ 251 (253)
T PRK02083 246 EQGIPV 251 (253)
T ss_pred HCCCcc
Confidence 988865
No 100
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=39.86 E-value=3.9e+02 Score=26.58 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=89.7
Q ss_pred CCChHHHHHHHHHHHHcCCcEE-eCCCCcChHHHHHHHHHhhhhhcCCccceeeEeee---ccc---CCCCCCCCHHHHH
Q 016794 73 KIDINNAVNAMLHYVDAGLTTF-DMADIYGPAEDLYGIFINRVRRERPPEFLDKVRGL---TKW---VPPPVKMTSSIVR 145 (382)
Q Consensus 73 ~~~~~~~~~~l~~A~~~Gi~~f-DTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~---tk~---~~~~~~~~~~~i~ 145 (382)
..+.+.-.+-++.|++.|-..+ |-+. .|+-..+--+.|+..+.+ +-++-+. .+. .....+++++.+.
T Consensus 73 ~~d~~~E~~K~~~A~~~GADtiMDLSt-ggdl~~iR~~il~~s~vp-----vGTVPiYqa~~~~~~k~~~~~~mt~d~~~ 146 (431)
T PRK13352 73 ISDIEEELEKAKVAVKYGADTIMDLST-GGDLDEIRRAIIEASPVP-----VGTVPIYQAAVEAARKYGSVVDMTEDDLF 146 (431)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHcCCCC-----CcChhHHHHHHHHHhcCCChhhCCHHHHH
Confidence 3566777888999999998744 6553 355333222333332211 1111110 001 1122367888888
Q ss_pred HHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHH-cCCCeeeeccccccc
Q 016794 146 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVV 224 (382)
Q Consensus 146 ~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~-~~~~~~~~q~~~n~~ 224 (382)
+.+|+-.+ |=+|.+-+|.-- +.+.++.++++| |..|+-+-...-+..... ++ .=|++
T Consensus 147 ~~ie~qa~----~GVDfmTiHcGi--------~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~n~--------~ENPl 204 (431)
T PRK13352 147 DVIEKQAK----DGVDFMTIHCGV--------TRETLERLKKSG--RIMGIVSRGGSFLAAWMLHNN--------KENPL 204 (431)
T ss_pred HHHHHHHH----hCCCEEEEccch--------hHHHHHHHHhcC--CccCeecCCHHHHHHHHHHcC--------CcCch
Confidence 88777655 458899999741 456788889888 567877777776665553 32 22444
Q ss_pred cCChhhhHHHHHHHhCCcEEEcccccccccC
Q 016794 225 DMRPQQKMAELCQLTGVKLITYGTVMGGLLS 255 (382)
Q Consensus 225 ~~~~~~~~l~~~~~~gi~via~spl~~G~L~ 255 (382)
...-+++++.|+++++.+- |+-|+-.
T Consensus 205 -ye~fD~lLeI~~~yDVtlS----LGDglRP 230 (431)
T PRK13352 205 -YEHFDYLLEILKEYDVTLS----LGDGLRP 230 (431)
T ss_pred -HHHHHHHHHHHHHhCeeee----ccCCcCC
Confidence 2233589999999999884 4455433
No 101
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=39.47 E-value=1e+02 Score=29.47 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=60.9
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 237 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 237 (382)
.++.++-.|-+ .+.++.+.+|++.-.+. ..|=|.++...+..+++.+ -++++|...+.+-. ..-..+...|+
T Consensus 198 ~~~~~iEeP~~-----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~dvi~~d~~~~GGit~~~~~~~~A~ 271 (324)
T TIGR01928 198 YQLLYIEEPFK-----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELG-NVKVINIKPGRLGGLTEVQKAIETCR 271 (324)
T ss_pred CCCcEEECCCC-----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcC-CCCEEEeCcchhcCHHHHHHHHHHHH
Confidence 45666666542 23467788888876665 6677888999999988765 37777877554211 12247899999
Q ss_pred HhCCcEEEcccccccc
Q 016794 238 LTGVKLITYGTVMGGL 253 (382)
Q Consensus 238 ~~gi~via~spl~~G~ 253 (382)
.+|+.++..+.+.+|+
T Consensus 272 ~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 272 EHGAKVWIGGMLETGI 287 (324)
T ss_pred HcCCeEEEcceEcccH
Confidence 9999998766665553
No 102
>PLN02428 lipoic acid synthase
Probab=38.91 E-value=3.8e+02 Score=26.09 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=82.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEeC-CC---Cc--ChHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHH
Q 016794 74 IDINNAVNAMLHYVDAGLTTFDM-AD---IY--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 147 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~~Gi~~fDT-A~---~Y--G~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~ 147 (382)
.+.++..+++..+.+.|++++=- +. .| +..+. +.+.++.+..... .+.+.. . .+. ...+ ..
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~-~~elir~Ir~~~P-~i~Ie~--L---~pd-f~~d-----~e 196 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGH-FAETVRRLKQLKP-EILVEA--L---VPD-FRGD-----LG 196 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHH-HHHHHHHHHHhCC-CcEEEE--e---Ccc-ccCC-----HH
Confidence 45566677888888889886532 11 12 22332 3455555443222 232221 1 111 0112 22
Q ss_pred HHHHHhhcCCCCcceEEEecCCC----------CCCcHHHHHHHHHHHHHc--CCcc----EEeccCCcHHHHHHHHHc-
Q 016794 148 IDVSRRRMDVPCLDMLQFHWWDY----------SNPGYLDALNHLTDLKEE--GKIK----TVALTNFDTERLRIILEN- 210 (382)
Q Consensus 148 ~e~SL~~Lg~d~iDl~~lH~p~~----------~~~~~~e~~~aL~~l~~~--Gkir----~iGvSn~~~~~l~~~~~~- 210 (382)
+-+.|+.-| +|. +-|+++. .....++.++.|+.+++. |..- -+|+ +-+.+++.+.+..
T Consensus 197 lL~~L~eAG---~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~L 271 (349)
T PLN02428 197 AVETVATSG---LDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDL 271 (349)
T ss_pred HHHHHHHcC---CCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHH
Confidence 222333445 555 4477653 112367899999999998 7653 2466 4566666655541
Q ss_pred -CCCeeeecc-cc----------ccc-cCChhhhHHHHHHHhCCcEEEcccccc
Q 016794 211 -GIPVVSNQV-QH----------SVV-DMRPQQKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 211 -~~~~~~~q~-~~----------n~~-~~~~~~~~l~~~~~~gi~via~spl~~ 251 (382)
...++++.+ +| +-+ .+..-+.+-+++.+.|...++.+||-.
T Consensus 272 relgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 272 RAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 122333322 11 111 111124677788888999999888865
No 103
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=38.76 E-value=3.6e+02 Score=25.84 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=57.8
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 237 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 237 (382)
+|+.++-.|-+. +.++.+.+|++...|. +.|=|.++...+.++++.+ .++++|...+..-. ..-..+...|+
T Consensus 197 ~~~~~iEeP~~~-----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-a~d~i~~d~~~~GGit~~~~i~~~A~ 270 (341)
T cd03327 197 YELRWIEEPLIP-----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR-AVDILQPDVNWVGGITELKKIAALAE 270 (341)
T ss_pred cCCccccCCCCc-----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 456666666432 2367788888887776 6666778999999998865 47888887654311 12357899999
Q ss_pred HhCCcEEEcc
Q 016794 238 LTGVKLITYG 247 (382)
Q Consensus 238 ~~gi~via~s 247 (382)
.+|+.++.++
T Consensus 271 ~~g~~~~~h~ 280 (341)
T cd03327 271 AYGVPVVPHA 280 (341)
T ss_pred HcCCeecccc
Confidence 9999987654
No 104
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.74 E-value=2.6e+02 Score=25.31 Aligned_cols=90 Identities=8% Similarity=0.061 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHH-HHHHcCCccEEeccC-CcHHHHHHHHHcCCCeeee
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLT-DLKEEGKIKTVALTN-FDTERLRIILENGIPVVSN 217 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~-~l~~~Gkir~iGvSn-~~~~~l~~~~~~~~~~~~~ 217 (382)
+++...+- -+.|-+-|+..+.+=+ ..+...+.++.|. +..++.-=-.||+.+ .+.++++.+++.|-.|.+
T Consensus 25 ~~~~a~~~-~~al~~gGi~~iEiT~------~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV- 96 (222)
T PRK07114 25 DVEVAKKV-IKACYDGGARVFEFTN------RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV- 96 (222)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeC------CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE-
Confidence 44544443 3456667766555432 2222444555443 222332213688876 478999999998865532
Q ss_pred ccccccccCChhhhHHHHHHHhCCcEE
Q 016794 218 QVQHSVVDMRPQQKMAELCQLTGVKLI 244 (382)
Q Consensus 218 q~~~n~~~~~~~~~~l~~~~~~gi~vi 244 (382)
+ +....+++++|+++||.++
T Consensus 97 ----s---P~~~~~v~~~~~~~~i~~i 116 (222)
T PRK07114 97 ----T---PLFNPDIAKVCNRRKVPYS 116 (222)
T ss_pred ----C---CCCCHHHHHHHHHcCCCEe
Confidence 2 3345699999999999988
No 105
>PRK05588 histidinol-phosphatase; Provisional
Probab=38.19 E-value=3.1e+02 Score=24.95 Aligned_cols=106 Identities=11% Similarity=0.080 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCcEEeCCCCc--C---h---HHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHH
Q 016794 77 NNAVNAMLHYVDAGLTTFDMADIY--G---P---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 148 (382)
Q Consensus 77 ~~~~~~l~~A~~~Gi~~fDTA~~Y--G---~---sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~ 148 (382)
....+.++.|.+.|+..+ .+++. . . ... +-..++...+-+ ++ ++..+-.. ++.++ ....+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~-~~~y~~~i~~~~--~~--~I~~GiE~-----~~~~~-~~~~~ 83 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFD-VDSYFNKYSKYR--NN--KLLLGIEL-----GMEKD-LIEEN 83 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccC-HHHHHHHHHHHh--cC--CcceEEEe-----cccCC-CHHHH
Confidence 357799999999999988 66653 1 0 000 111122111100 11 12212111 11222 34555
Q ss_pred HHHHhhcCCCCcceEEEecCCCCC---------CcHHH----HHHHHHHHHH-cCCccEEe
Q 016794 149 DVSRRRMDVPCLDMLQFHWWDYSN---------PGYLD----ALNHLTDLKE-EGKIKTVA 195 (382)
Q Consensus 149 e~SL~~Lg~d~iDl~~lH~p~~~~---------~~~~e----~~~aL~~l~~-~Gkir~iG 195 (382)
++.|++...||+ +.-+|..+... ...++ -++.+.++++ .|++..+|
T Consensus 84 ~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 84 KELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 777777777777 67889853211 11233 3366677666 46666666
No 106
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=37.63 E-value=3e+02 Score=27.67 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEec
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFHW 167 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~ 167 (382)
.+.+.+++.++..++ |+.++|++|.+.-
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 477888888777654 8999999988753
No 107
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=37.27 E-value=2.8e+02 Score=24.84 Aligned_cols=81 Identities=11% Similarity=0.083 Sum_probs=49.9
Q ss_pred hhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEecc-CCcHHHHHHHHHcCCCeeeeccccccccCChhh
Q 016794 153 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQ 230 (382)
Q Consensus 153 ~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gk-ir~iGvS-n~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~ 230 (382)
..+|.||+=+++--. .+..- ..+...++.+.-. ++.+||. |.+.+.+.++++. ..++++|+.-.. ..
T Consensus 19 ~~~gad~iG~If~~~-SpR~V----s~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-~~ld~VQlHG~e-----~~ 87 (208)
T COG0135 19 AKAGADYIGFIFVPK-SPRYV----SPEQAREIASAVPKVKVVGVFVNESIEEILEIAEE-LGLDAVQLHGDE-----DP 87 (208)
T ss_pred HHcCCCEEEEEEcCC-CCCcC----CHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-cCCCEEEECCCC-----CH
Confidence 457889887765542 22222 1233344444443 8899988 6678888888875 468999987552 33
Q ss_pred hHHHHHHHhC-CcEE
Q 016794 231 KMAELCQLTG-VKLI 244 (382)
Q Consensus 231 ~~l~~~~~~g-i~vi 244 (382)
+.++..++.. +.++
T Consensus 88 ~~~~~l~~~~~~~v~ 102 (208)
T COG0135 88 EYIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHHhhcCCceE
Confidence 5566666654 5554
No 108
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=36.78 E-value=3.2e+02 Score=27.54 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCccE----EeccCCcHHHHHHHHHc--CCCeeeeccccccccCChhhhHHHHHHHhCCc
Q 016794 175 YLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 242 (382)
Q Consensus 175 ~~e~~~aL~~l~~~Gkir~----iGvSn~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~ 242 (382)
.++..++++.+++.|.--. +|+-+.+.+.+++.++. ...++. +.++++.+.+...+.+.+++.|+-
T Consensus 322 ~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~--~~~~~l~P~PGT~l~~~~~~~g~~ 393 (472)
T TIGR03471 322 VEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHT--IQVSLAAPYPGTELYDQAKQNGWI 393 (472)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCc--eeeeecccCCCcHHHHHHHHCCCc
Confidence 5677788888888886433 25666777777665542 122333 334555566777788888877753
No 109
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=36.34 E-value=2e+02 Score=25.35 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcH--HHHHHHHHcCCCeeeecc
Q 016794 142 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQV 219 (382)
Q Consensus 142 ~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~--~~l~~~~~~~~~~~~~q~ 219 (382)
+.....+...++..+...-.+++--...............+..+++.|- .+++.+++. ..++.+.. .+|+++-+
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~--~~~d~iKl 173 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR--LPVDYLKI 173 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh--CCCCEEEE
Confidence 4456777788888887642333322222212224568899999999997 577776643 33444443 34555555
Q ss_pred ccccccC--------ChhhhHHHHHHHhCCcEEE
Q 016794 220 QHSVVDM--------RPQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 220 ~~n~~~~--------~~~~~~l~~~~~~gi~via 245 (382)
..+.+.. ..-..++..|+..|+.+++
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 207 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVA 207 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEE
Confidence 5443321 1124688899999999987
No 110
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=36.26 E-value=48 Score=23.35 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 016794 299 TLKRIASKHGVSIPVVAVRYILD 321 (382)
Q Consensus 299 ~l~~ia~~~g~s~aqlaL~w~l~ 321 (382)
-+.+||+.+|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 46689999999999999999854
No 111
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=35.99 E-value=1.7e+02 Score=26.31 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHH----cCCCe
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 214 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~----~~~~~ 214 (382)
++.+.. ..+-+.|.++|+++|++- .|..... ..+.++.+.+.... .+..+++......++.+.+ .+.+.
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFASED-DFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHH-HHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHH-HHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 454544 445556999999998887 3332222 33455555555555 4455666666766666444 45443
Q ss_pred eeecccccccc------CC------hhhhHHHHHHHhCCcE
Q 016794 215 VSNQVQHSVVD------MR------PQQKMAELCQLTGVKL 243 (382)
Q Consensus 215 ~~~q~~~n~~~------~~------~~~~~l~~~~~~gi~v 243 (382)
.-+-...|... .. .-...+.++++.|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 32323333210 00 1136889999999998
No 112
>PRK14017 galactonate dehydratase; Provisional
Probab=35.98 E-value=2.1e+02 Score=27.99 Aligned_cols=83 Identities=16% Similarity=0.078 Sum_probs=58.8
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 237 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 237 (382)
+++.++-.|-+.. .++.+.+|.+...+. ..|=|-++...+..+++.+ -++++|...+.+-. ..-..+.+.|+
T Consensus 203 ~~~~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~~GGit~~~~ia~~A~ 276 (382)
T PRK14017 203 YRPMFIEEPVLPE-----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSHAGGITECRKIAAMAE 276 (382)
T ss_pred cCCCeEECCCCcC-----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccccCCHHHHHHHHHHHH
Confidence 4566666664322 256788888887766 5677778999999998865 37778877654311 12357999999
Q ss_pred HhCCcEEEccc
Q 016794 238 LTGVKLITYGT 248 (382)
Q Consensus 238 ~~gi~via~sp 248 (382)
.+||.++.++.
T Consensus 277 ~~gi~~~~h~~ 287 (382)
T PRK14017 277 AYDVALAPHCP 287 (382)
T ss_pred HcCCeEeecCC
Confidence 99999987654
No 113
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=35.89 E-value=3.9e+02 Score=25.67 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcC
Q 016794 137 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 211 (382)
Q Consensus 137 ~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~ 211 (382)
..++.+...+-.+-+.+-+++++|=|=.+.......++..+++++.+.|+++|..-.+ +++-++...+++.+.|
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~-yc~~d~~~a~~l~~~g 218 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMV-YCSDDPIAAKRLEDAG 218 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHhcC
Confidence 4678888888888888888999888877766655566689999999999999986533 4455777777776655
No 114
>PRK15108 biotin synthase; Provisional
Probab=35.85 E-value=4.1e+02 Score=25.64 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccC--CcHHHHHHHHHcCCC---
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIP--- 213 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn--~~~~~l~~~~~~~~~--- 213 (382)
.+++.|.+.+.. .+.+|...+ .....+.++....++...+.+..+++.|. .+.+|+ .+.+.+.++.+.|..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688888888775 556898877 22333223322225667777777787764 344554 678888888887643
Q ss_pred --eeeeccccccccC-C-h--hhhHHHHHHHhCCcEEEccccccc
Q 016794 214 --VVSNQVQHSVVDM-R-P--QQKMAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 214 --~~~~q~~~n~~~~-~-~--~~~~l~~~~~~gi~via~spl~~G 252 (382)
++...--|.-+.. . . --+.++.+++.|+.+-+-..++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 1121111221111 1 1 126788888889876554444433
No 115
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=35.60 E-value=38 Score=22.50 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Q 016794 298 QTLKRIASKHGVSIPVVAVRYILD 321 (382)
Q Consensus 298 ~~l~~ia~~~g~s~aqlaL~w~l~ 321 (382)
+.++++.++.|+|..++|-.--++
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~gvs 28 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAGVG 28 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCC
Confidence 556666677788887777554333
No 116
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=35.40 E-value=1.9e+02 Score=28.10 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHHHhCCcEEEccccccc
Q 016794 178 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 178 ~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~spl~~G 252 (382)
.++.+.+|++...+. +.|=|-++...+..+++.+ .++++|+.....-. ..-..+...|+.+|+.++..+.+.++
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~-~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKAS-AADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC-CCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 366777787776665 6677788888888888764 36777776554211 12247888999999999876544444
No 117
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=35.14 E-value=5.1e+02 Score=26.53 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHH--------------HcCCccEEeccCC------c
Q 016794 141 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK--------------EEGKIKTVALTNF------D 200 (382)
Q Consensus 141 ~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~--------------~~Gkir~iGvSn~------~ 200 (382)
++-|-..++...+.++.+.++++.++.|..........-.+|+.++ +.++|--||.++. +
T Consensus 97 selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D 176 (511)
T TIGR01278 97 SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHD 176 (511)
T ss_pred HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHH
Confidence 3444444455555555556889999998765432222222333222 2456888898763 3
Q ss_pred HHHHHHHHH
Q 016794 201 TERLRIILE 209 (382)
Q Consensus 201 ~~~l~~~~~ 209 (382)
..+++++++
T Consensus 177 ~~elkrlL~ 185 (511)
T TIGR01278 177 LIELRRLLK 185 (511)
T ss_pred HHHHHHHHH
Confidence 456666665
No 118
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=35.13 E-value=4e+02 Score=26.00 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=52.8
Q ss_pred ceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHHHh
Q 016794 161 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLT 239 (382)
Q Consensus 161 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~ 239 (382)
|-+.+-.|. ...+...+..+...+.++..-+...+.+.+++++....+..++..+-|+.-. ...+.+.+.|+++
T Consensus 91 D~Vl~~~p~-----y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~ 165 (382)
T TIGR02080 91 DLLVAPHDC-----YGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAV 165 (382)
T ss_pred CEEEEcCCC-----cHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHc
Confidence 555555443 3344555555555555555555555677787777544455666666676422 2335788899999
Q ss_pred CCcEEEccccccc
Q 016794 240 GVKLITYGTVMGG 252 (382)
Q Consensus 240 gi~via~spl~~G 252 (382)
|+.++.=...+.+
T Consensus 166 g~~vvvD~a~~~~ 178 (382)
T TIGR02080 166 GAVVVVDNTFLSP 178 (382)
T ss_pred CCEEEEECCCccc
Confidence 9888865555444
No 119
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=35.03 E-value=4.3e+02 Score=25.67 Aligned_cols=99 Identities=10% Similarity=0.043 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEeccCCcHHHHHHHHHcCCCeee
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 216 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gk-ir~iGvSn~~~~~l~~~~~~~~~~~~ 216 (382)
.++.+... .+-+.|.++|+++|++- .|.. .+.-++.+..+.+.+. .+..+++....+.++.+.+.|.+...
T Consensus 19 ~~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~----~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKL-AIARALDEAGVDELEVG---IPAM----GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEe---CCCC----CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 45655444 45555999999998884 3322 2334667777777643 77788887788899988887644222
Q ss_pred eccccccc------cCChh------hhHHHHHHHhCCcEE
Q 016794 217 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLI 244 (382)
Q Consensus 217 ~q~~~n~~------~~~~~------~~~l~~~~~~gi~vi 244 (382)
+-+.-|.. ....+ .+.+++++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 22222211 11111 267889999998754
No 120
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=34.97 E-value=3.5e+02 Score=24.51 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=36.6
Q ss_pred cHHHHHHHHH-cCCCeeee-cc-ccccccCCh---hhhHHHHHHHhCCcEEEccccccccc
Q 016794 200 DTERLRIILE-NGIPVVSN-QV-QHSVVDMRP---QQKMAELCQLTGVKLITYGTVMGGLL 254 (382)
Q Consensus 200 ~~~~l~~~~~-~~~~~~~~-q~-~~n~~~~~~---~~~~l~~~~~~gi~via~spl~~G~L 254 (382)
.+.+++.+.+ .|+.+..+ -+ +||.++..- ..++.+|++..|-.-+.+.|+.-|-.
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~ 110 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSW 110 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCC
Confidence 5566666655 46554333 32 366654322 25799999999999999999987643
No 121
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=34.87 E-value=2.1e+02 Score=25.52 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=41.7
Q ss_pred hhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEecc-CCcHHHHHHHHHcCCCeeeeccccc
Q 016794 153 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 222 (382)
Q Consensus 153 ~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvS-n~~~~~l~~~~~~~~~~~~~q~~~n 222 (382)
..+|.|++=+.+... .+... ..+..+.+.+.. .+.+..+||. |-+++.+.++++. ..++++|+.-+
T Consensus 20 ~~~Gad~iGfI~~~~-S~R~V-~~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHg~ 86 (210)
T PRK01222 20 AELGADAIGFVFYPK-SPRYV-SPEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-VPLDLLQLHGD 86 (210)
T ss_pred HHcCCCEEEEccCCC-CCCcC-CHHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECCC
Confidence 348999999864322 22212 233444444333 3568999987 6688888888764 46899999754
No 122
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=34.50 E-value=2.5e+02 Score=27.94 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=58.7
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHc------CCccEEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKM 232 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~------Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~ 232 (382)
+++ ++-.|-+... .++.++.|.+|++. ..=-..+=|-++.+.+.++++.+ -.+++|+..+-+-. ..-..+
T Consensus 264 ~~~-~iEqPv~~~d-~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~-a~d~v~iK~~k~GGIt~a~ki 340 (408)
T TIGR01502 264 FHL-RIEGPMDVGS-RQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK-AGHMVQIKTPDVGGVNNIARA 340 (408)
T ss_pred CCe-EEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC-CCCEEEeCccccCCHHHHHHH
Confidence 344 7777754332 24567788888766 33334566678899999998865 37778887664311 123578
Q ss_pred HHHHHHhCCcEEEcccc
Q 016794 233 AELCQLTGVKLITYGTV 249 (382)
Q Consensus 233 l~~~~~~gi~via~spl 249 (382)
.++|+.+||.++..+..
T Consensus 341 a~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 341 IMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHcCCEEEEeCCC
Confidence 99999999999986554
No 123
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=34.24 E-value=90 Score=30.91 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=25.9
Q ss_pred HHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEE
Q 016794 149 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 194 (382)
Q Consensus 149 e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~i 194 (382)
+...++|.-.-.+.+.+|.-... =++||+|.++|.+..+
T Consensus 201 ~~~~~~Le~~G~Ev~VFHAtG~G-------G~aME~Li~~G~~~~V 239 (403)
T PF06792_consen 201 DAIRERLEEEGYEVLVFHATGTG-------GRAMERLIREGQFDGV 239 (403)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCc-------hHHHHHHHHcCCcEEE
Confidence 33333343345889999985432 3579999999997644
No 124
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.01 E-value=3.5e+02 Score=24.33 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCccceeeEe--------eecccCCCCCCCCHHHHHH
Q 016794 75 DINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLDKVR--------GLTKWVPPPVKMTSSIVRE 146 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~--------~~tk~~~~~~~~~~~~i~~ 146 (382)
+.+++.+++ +.|+..+..+...-.+-..+.+..+.+..++. .+-+..+ +.++.|......+...+.
T Consensus 82 s~~d~~~~l----~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i-~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~- 155 (243)
T cd04731 82 SLEDARRLL----RAGADKVSINSAAVENPELIREIAKRFGSQCV-VVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWA- 155 (243)
T ss_pred CHHHHHHHH----HcCCceEEECchhhhChHHHHHHHHHcCCCCE-EEEEEeeecCCCceEEEEcCCceecCCCHHHHH-
Confidence 345555544 46888887665543333445555555433311 1112111 223333221122222222
Q ss_pred HHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCC-cHHHHHHHHHc
Q 016794 147 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILEN 210 (382)
Q Consensus 147 ~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~~ 210 (382)
+-++.+| +|.+.+|..+.......--++.+.++++.-.+.-|..... +++.++++.+.
T Consensus 156 ---~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~ 214 (243)
T cd04731 156 ---KEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEE 214 (243)
T ss_pred ---HHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHh
Confidence 3334556 5566677654321100113555666666555666665543 57778877764
No 125
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=33.32 E-value=4.5e+02 Score=25.34 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=65.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCccceeeEeeecc--------------cCC---CC
Q 016794 74 IDINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK--------------WVP---PP 136 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk--------------~~~---~~ 136 (382)
.+.+.-.++.++|-+.|+-+|=|-..+...+. |.++.-+ -.|+.+- -.| ..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~-----l~~~~~~-------ayKIaS~E~~~~plik~iA~~~kPiIlST 154 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDL-----LESLNPP-------AYKIASGEINDLPLIKYIAKKGKPIILST 154 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHH-----HHhcCCC-------eEEecCccccChHHHHHHHhcCCCEEEEc
Confidence 55677788889999999999977655543332 1211111 0111110 000 00
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHH-HHHHHHHHHHcCCccEEeccCCcHHHHHHHH
Q 016794 137 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD-ALNHLTDLKEEGKIKTVALTNFDTERLRIIL 208 (382)
Q Consensus 137 ~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e-~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~ 208 (382)
.-.+-+.+.++++.-.++ |. .|+.+||+........++ -+.+|.+|.+.= -.-||+|.|+...+.-+.
T Consensus 155 Gma~~~ei~~av~~~r~~-g~--~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~ 223 (347)
T COG2089 155 GMATIEEIEEAVAILREN-GN--PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLA 223 (347)
T ss_pred ccccHHHHHHHHHHHHhc-CC--CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHH
Confidence 122456677777664443 33 399999996543222333 455555555543 457999999987554433
No 126
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=33.17 E-value=3.4e+02 Score=23.96 Aligned_cols=124 Identities=15% Similarity=0.048 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEeC----------CCCcCh----HHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCC
Q 016794 75 DINNAVNAMLHYVDAGLTTFDM----------ADIYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMT 140 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDT----------A~~YG~----sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~ 140 (382)
+.++..+..+.+.+.|+..||- .+.||. ..+++-+.++.....- .+.+.+++. .... ..
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~--~~~v~vk~r--~~~~---~~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV--PIPVTVKIR--LGWD---DE 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc--CCCEEEEEe--eccC---Cc
Confidence 5677788888888999999984 244653 2233445555443211 112223321 1111 01
Q ss_pred HHHHHHHHHHHHhhcCCCCcceEEEecCCCCC-CcHHHHHHHHHHHHHcCCccEEeccCC-cHHHHHHHHHc
Q 016794 141 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILEN 210 (382)
Q Consensus 141 ~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~-~~~~e~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~~ 210 (382)
+...+-+ +.|+.+|+ |.+.+|...... ..-...|+.+.++++.-.+--++..+. +.+++.++++.
T Consensus 138 -~~~~~~~-~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~ 204 (231)
T cd02801 138 -EETLELA-KALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQ 204 (231)
T ss_pred -hHHHHHH-HHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHh
Confidence 1222222 23455674 555667643210 000113455555666555555554443 45555555543
No 127
>PRK06361 hypothetical protein; Provisional
Probab=33.14 E-value=3.4e+02 Score=23.83 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCcEEeCCCCcCh--HHHH---HHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHHH
Q 016794 78 NAVNAMLHYVDAGLTTFDMADIYGP--AEDL---YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 152 (382)
Q Consensus 78 ~~~~~l~~A~~~Gi~~fDTA~~YG~--sE~~---lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL 152 (382)
...+++..|.+.|+..|=-+++... -... +-+..++.... . . +++..+....- ..++.+ ..+...+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~-~-~--i~v~~GiE~~~----~~~~~~-~~~~~~~ 81 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELY-W-D--IEVIPGVELTH----VPPKLI-PKLAKKA 81 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhc-C-C--CEEEEEEEEcc----cCchhh-chHHHHH
Confidence 4679999999999998865555421 1111 11111211111 0 1 22222222211 122223 3334555
Q ss_pred hhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCC-cHHHHHHHHHcCCCeeeeccccccccCChhhh
Q 016794 153 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQVQHSVVDMRPQQK 231 (382)
Q Consensus 153 ~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~ 231 (382)
.+++ .|+..+|......+ .. ... -.++.+.|.+..+|=-.. ..+.++.+.+.+..+.++-. ...+.....
T Consensus 82 ~~~~---~~~~svH~~~~~~~-~~-~~~-~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~~---~~~~~~~~~ 152 (212)
T PRK06361 82 RDLG---AEIVVVHGETIVEP-VE-EGT-NLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITAR---KGHSLTNGH 152 (212)
T ss_pred HHCC---CEEEEECCCCcchh-hh-hhh-HHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEECC---CCcccchHH
Confidence 5665 66668995433222 11 111 145778898888874432 33445555555654544421 112334457
Q ss_pred HHHHHHHhCCcEEEcc
Q 016794 232 MAELCQLTGVKLITYG 247 (382)
Q Consensus 232 ~l~~~~~~gi~via~s 247 (382)
+++.+++.|+.++.-|
T Consensus 153 ~l~~a~~~gi~vv~~S 168 (212)
T PRK06361 153 VARIAREAGAPLVINT 168 (212)
T ss_pred HHHHHHHhCCcEEEEC
Confidence 9999999999987654
No 128
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.57 E-value=3e+02 Score=27.02 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=60.1
Q ss_pred eEEEecCCCC----------CCcHHHHHHHHHHHH-HcCC---ccEEecc--CCcHHHHHHHHH--cCC---Ceeeeccc
Q 016794 162 MLQFHWWDYS----------NPGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILE--NGI---PVVSNQVQ 220 (382)
Q Consensus 162 l~~lH~p~~~----------~~~~~e~~~aL~~l~-~~Gk---ir~iGvS--n~~~~~l~~~~~--~~~---~~~~~q~~ 220 (382)
.+-||.+++. ...++++++++.+.. +.|+ |+|+=+. |.+.++++++.+ .+. +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 4678988753 123788999988776 4454 4555555 456666666555 234 57889999
Q ss_pred cccccCC----h----hhhHHHHHHHhCCcEEEcccccc
Q 016794 221 HSVVDMR----P----QQKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 221 ~n~~~~~----~----~~~~l~~~~~~gi~via~spl~~ 251 (382)
||++... + -..+.+..+++||.+......+.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 9996431 1 13578888999999988776654
No 129
>PLN02363 phosphoribosylanthranilate isomerase
Probab=32.08 E-value=1.3e+02 Score=27.88 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEecc-CCcHHHHHHHHHcCCCeeeec
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 218 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvS-n~~~~~l~~~~~~~~~~~~~q 218 (382)
+++.++.+. ++|.||+=+++... .+... ..+..+.+.+......++.+||- |-+++.+.++++. ..++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~-SpR~V-s~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPK-SKRSI-SLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADS-SDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCC-CCCcC-CHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 445555544 48999999874332 22212 23444455544443346789986 7888888888764 4689999
Q ss_pred cccc
Q 016794 219 VQHS 222 (382)
Q Consensus 219 ~~~n 222 (382)
+.-+
T Consensus 128 LHG~ 131 (256)
T PLN02363 128 LHGN 131 (256)
T ss_pred ECCC
Confidence 9754
No 130
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=31.92 E-value=2e+02 Score=23.86 Aligned_cols=60 Identities=18% Similarity=0.193 Sum_probs=33.9
Q ss_pred CccEEeccCCcHHHHHHHHHcCCCeeeeccccc-cccCChhhhHHHHHHHhCCcE-EEccccc
Q 016794 190 KIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQLTGVKL-ITYGTVM 250 (382)
Q Consensus 190 kir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n-~~~~~~~~~~l~~~~~~gi~v-ia~spl~ 250 (382)
+..-|.|...+.+.+..++.. ..+|++...+. -.........+..|.++|+.+ +.|+|+-
T Consensus 24 ~~divav~p~~~~~~~~a~~~-~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l 85 (150)
T PF01876_consen 24 KYDIVAVRPGSEKAFRAACSD-PRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLL 85 (150)
T ss_dssp --SEEEEE-S-HHHHHHHHHT-T--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHH
T ss_pred CceEEEEEcCCHHHHHHHHhc-CCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhh
Confidence 344455555566666777664 35777777763 112344568899999999998 6788885
No 131
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=31.88 E-value=77 Score=28.91 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCcccccccccccccccCCCCCCCC---hHHHHHHHHH----HHHcCCcEEeCCC
Q 016794 51 GNDMLDICRVVNGMWQTSGGWGKID---INNAVNAMLH----YVDAGLTTFDMAD 98 (382)
Q Consensus 51 G~tg~~vs~lglGt~~~~~~~~~~~---~~~~~~~l~~----A~~~Gi~~fDTA~ 98 (382)
-.+|+.||.++|.+.+-. .+|..| .+++.+++.. |.+.|||.|--|.
T Consensus 64 ~etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG 117 (287)
T COG3623 64 QETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG 117 (287)
T ss_pred HHhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc
Confidence 456778999999886543 234333 4556555555 5589999998874
No 132
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=31.83 E-value=1.1e+02 Score=30.18 Aligned_cols=95 Identities=12% Similarity=0.183 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCccEEeccCCcHHHHHHHHH----cCCCeeeeccccccccCChhhhHHHHHHHhC--CcEEEccccc
Q 016794 177 DALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPVVSNQVQHSVVDMRPQQKMAELCQLTG--VKLITYGTVM 250 (382)
Q Consensus 177 e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~----~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~g--i~via~spl~ 250 (382)
.+++++.+..++++ ++...+.+.+-..++ .|+.|..+..-.| .+.++.+++.+ ++++++.
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~-------~~~~~~~~~~~R~~giVSRG--- 187 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT-------RETLERLKKSGRIMGIVSRG--- 187 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------HHHHHHHHhcCCccCeecCC---
Confidence 36677777765554 777888888766664 4777766555544 36677777543 5555543
Q ss_pred ccccCccccCCCCCCCCCCCCCCCchhHHhHhhhhccCCchhHHHHHHHHHHHHHHcCCCH
Q 016794 251 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSI 311 (382)
Q Consensus 251 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 311 (382)
|.++..-. .....++.+.+-.+.|-+|+++|.+|.
T Consensus 188 Gs~~~~WM--------------------------~~n~~ENPlye~fD~lLeI~~~yDVtl 222 (431)
T PRK13352 188 GSFLAAWM--------------------------LHNNKENPLYEHFDYLLEILKEYDVTL 222 (431)
T ss_pred HHHHHHHH--------------------------HHcCCcCchHHHHHHHHHHHHHhCeee
Confidence 33332211 112233344455688889999998753
No 133
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=31.50 E-value=5.3e+02 Score=25.62 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHcCCccEEe
Q 016794 176 LDALNHLTDLKEEGKIKTVA 195 (382)
Q Consensus 176 ~e~~~aL~~l~~~Gkir~iG 195 (382)
..+.+.++.+++.|.--+++
T Consensus 89 ~~l~eLl~~lk~~gi~taI~ 108 (404)
T TIGR03278 89 PELEELTKGLSDLGLPIHLG 108 (404)
T ss_pred HHHHHHHHHHHhCCCCEEEe
Confidence 34444444555545444444
No 134
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=31.30 E-value=4.2e+02 Score=24.32 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeee
Q 016794 137 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 216 (382)
Q Consensus 137 ~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~ 216 (382)
...+.+.-.+..+-+.+-+++++|=|=.+..+..--|+..|+++|-+.|+++|-+- +=.++-++-..+++.+.| +.+
T Consensus 71 Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d~G--caa 147 (247)
T PF05690_consen 71 GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEDAG--CAA 147 (247)
T ss_dssp T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHTT---SE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHCC--CCE
Confidence 35688888888888999999998887777666555577899999999999999653 334455666677777755 333
Q ss_pred eccccccccCC----hhhhHHHHHHHhCCcEEEcc
Q 016794 217 NQVQHSVVDMR----PQQKMAELCQLTGVKLITYG 247 (382)
Q Consensus 217 ~q~~~n~~~~~----~~~~~l~~~~~~gi~via~s 247 (382)
++-.=+++-.. ....+-..+++.+|.||.-.
T Consensus 148 vMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 148 VMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp BEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred EEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 33333332110 01234445667799988744
No 135
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.82 E-value=2.3e+02 Score=28.05 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHc-CCCeeeeccccccccCChh-hhHHHHHHHhCCcEEEccccccc
Q 016794 175 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 175 ~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~-~~~l~~~~~~gi~via~spl~~G 252 (382)
+..+...++++.++.-|....+-.-+.+.+.+++.. ..+..+++.+-|++..-.+ ..+.+.|+++|+.++.=.+++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 455677777777777676666666666566655543 4678888888888755443 57888899999888888888887
Q ss_pred ccCc
Q 016794 253 LLSE 256 (382)
Q Consensus 253 ~L~~ 256 (382)
.+..
T Consensus 192 ~~q~ 195 (396)
T COG0626 192 VLQR 195 (396)
T ss_pred cccC
Confidence 7654
No 136
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=30.59 E-value=3.9e+02 Score=23.82 Aligned_cols=149 Identities=7% Similarity=0.060 Sum_probs=81.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCC-CCcCh-HHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHH
Q 016794 74 IDINNAVNAMLHYVDAGLTTFDMA-DIYGP-AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 151 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~~Gi~~fDTA-~~YG~-sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~S 151 (382)
.+.++..++++.-.+.||..|+.. +..+. ..+.+-+..+..+.. .+.... ....+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~-------~~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNA-------RLQALC-------RANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSS-------EEEEEE-------ESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhccc-------ccceee-------eehHHHHHHHHHhh
Confidence 467888899998889999999999 44444 223344433332221 111111 12456676666543
Q ss_pred HhhcCCCCcceEEEecCC-----CCC---CcHHHHHHHHHHHHHcCCccEEecc---CCcHHHHHHHHH----cCCCeee
Q 016794 152 RRRMDVPCLDMLQFHWWD-----YSN---PGYLDALNHLTDLKEEGKIKTVALT---NFDTERLRIILE----NGIPVVS 216 (382)
Q Consensus 152 L~~Lg~d~iDl~~lH~p~-----~~~---~~~~e~~~aL~~l~~~Gkir~iGvS---n~~~~~l~~~~~----~~~~~~~ 216 (382)
...|.+.+.++.-=++. ... ..++.+.+..+.+++.|....+++- .++++.+.++.+ .| ++.
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~ 153 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG--ADI 153 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT---SE
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC--CeE
Confidence 56788877765432210 000 0144566777788889988888874 455666655543 34 333
Q ss_pred eccc--cccccCChhhhHHHHHHHh
Q 016794 217 NQVQ--HSVVDMRPQQKMAELCQLT 239 (382)
Q Consensus 217 ~q~~--~n~~~~~~~~~~l~~~~~~ 239 (382)
+.+. +..+.+..-.+++...++.
T Consensus 154 i~l~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 154 IYLADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp EEEEETTS-S-HHHHHHHHHHHHHH
T ss_pred EEeeCccCCcCHHHHHHHHHHHHHh
Confidence 3333 3333333334666666654
No 137
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=30.08 E-value=5e+02 Score=24.92 Aligned_cols=138 Identities=12% Similarity=0.159 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhh----hhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHH
Q 016794 74 IDINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINR----VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 149 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~----~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e 149 (382)
.+.++...+++.+.+.|++=|=-+.. |..|-+-|.. ..+.. +..+..+|. ..+..-..
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlTGG----EPllR~dl~eIi~~l~~~~----~~~islTTN----------G~~L~~~a 104 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLTGG----EPLLRKDLDEIIARLARLG----IRDLSLTTN----------GVLLARRA 104 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEeCC----CchhhcCHHHHHHHHhhcc----cceEEEecc----------hhhHHHHH
Confidence 46899999999999999998753322 3332222221 11100 001222222 23455556
Q ss_pred HHHhhcCCCCcceEEEecCCCCC-------CcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeeccccc
Q 016794 150 VSRRRMDVPCLDMLQFHWWDYSN-------PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS 222 (382)
Q Consensus 150 ~SL~~Lg~d~iDl~~lH~p~~~~-------~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n 222 (382)
..|+.-|++.|-+ -||..+++. ..+.++++.+++++++|. .|+.+|.+-.-
T Consensus 105 ~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl---------------------~pVKlN~Vv~k 162 (322)
T COG2896 105 ADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGL---------------------TPVKLNTVLMK 162 (322)
T ss_pred HHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCC---------------------CceEEEEEEec
Confidence 6677788776653 344443321 114455555555555553 13455544433
Q ss_pred cccCChhhhHHHHHHHhC--CcEEEcccccc
Q 016794 223 VVDMRPQQKMAELCQLTG--VKLITYGTVMG 251 (382)
Q Consensus 223 ~~~~~~~~~~l~~~~~~g--i~via~spl~~ 251 (382)
-++...-.+++++|+..| +.+|-+.|++.
T Consensus 163 gvNd~ei~~l~e~~~~~~~~lrfIE~m~~g~ 193 (322)
T COG2896 163 GVNDDEIEDLLEFAKERGAQLRFIELMPLGE 193 (322)
T ss_pred CCCHHHHHHHHHHHhhcCCceEEEEEeecCc
Confidence 333334457889999888 44677777764
No 138
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=30.02 E-value=5.3e+02 Score=25.10 Aligned_cols=28 Identities=4% Similarity=0.072 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEe
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFH 166 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH 166 (382)
..+.+.+.+.++..++ |+.++|.+|.+.
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~ 193 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLT 193 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeE
Confidence 3477788888877664 788888888775
No 139
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=30.02 E-value=3.4e+02 Score=26.59 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEeccCCcHHHHHHHHHcCCCeee
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 216 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gk-ir~iGvSn~~~~~l~~~~~~~~~~~~ 216 (382)
.++.+.. ..+-+.|.++|+++|++- +|... ++-++.++.+.+.|+ .+.++++-.....++.+.+.|.+.
T Consensus 22 ~~s~e~k-~~ia~~L~~~GV~~IE~G---~p~~~----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~-- 91 (378)
T PRK11858 22 VFTNEEK-LAIARMLDEIGVDQIEAG---FPAVS----EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDA-- 91 (378)
T ss_pred CCCHHHH-HHHHHHHHHhCCCEEEEe---CCCcC----hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCE--
Confidence 4566644 445556999999999974 34321 233556666666554 445555555577888888876442
Q ss_pred ecccccccc--------CCh------hhhHHHHHHHhCCcEEEc
Q 016794 217 NQVQHSVVD--------MRP------QQKMAELCQLTGVKLITY 246 (382)
Q Consensus 217 ~q~~~n~~~--------~~~------~~~~l~~~~~~gi~via~ 246 (382)
+.+-+..-+ ... -.+.++++++.|+.+...
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 222222111 111 135788999999876653
No 140
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.82 E-value=2.4e+02 Score=28.20 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=47.1
Q ss_pred HHHHHHHcCCccEEeccCCcHHHHHHHHH------c-CCCeeeeccccccccCChhhhHHHHHHHhCCcEEEccc
Q 016794 181 HLTDLKEEGKIKTVALTNFDTERLRIILE------N-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 248 (382)
Q Consensus 181 aL~~l~~~Gkir~iGvSn~~~~~l~~~~~------~-~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~sp 248 (382)
-...+-+.|-...+|..+.+++++++.+. . +-||-+|-+ .++-++..+...++.+.++||.++..+-
T Consensus 30 LVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 30 LVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 34556788999999999999999887664 1 335666654 3332233356789999999999876553
No 141
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=29.72 E-value=3.2e+02 Score=26.57 Aligned_cols=99 Identities=10% Similarity=0.119 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEeccCCcHHHHHHHHHcCCCeee
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 216 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gk-ir~iGvSn~~~~~l~~~~~~~~~~~~ 216 (382)
.++.+... .+-+.|.++|+++|.+- +|.. .++-++++..+.+.++ .+-.+++....+.++.+.+.|.+...
T Consensus 18 ~~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~----~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKV-EIARKLDELGVDVIEAG---FPIA----SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEe---CCCC----ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 45555444 44555999999999874 3322 1234667777766555 55556667778889998887754322
Q ss_pred eccccccc------cCCh------hhhHHHHHHHhCCcEE
Q 016794 217 NQVQHSVV------DMRP------QQKMAELCQLTGVKLI 244 (382)
Q Consensus 217 ~q~~~n~~------~~~~------~~~~l~~~~~~gi~vi 244 (382)
+-+.-|.. .... -.+.+.+|+++|+.+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 21122211 1111 1367889999998764
No 142
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=29.68 E-value=88 Score=19.20 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHH
Q 016794 295 VLLQTLKRIASKHGVSIPVVA 315 (382)
Q Consensus 295 ~~~~~l~~ia~~~g~s~aqla 315 (382)
+..+.|.++|++.|.|.+++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 345899999999999988854
No 143
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=28.87 E-value=5.7e+02 Score=25.11 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=53.3
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeecccccccc-CChhhhHHHHHHH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQL 238 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~l~~~~~ 238 (382)
=|.+++-.|. ...+...+..+...+.++-.-+...+.+.+++++..+.+..++..+-|+.- ......+.+.|++
T Consensus 92 Gd~Il~~~~~-----y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~ 166 (388)
T PRK08861 92 DDLIVAPHDC-----YGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKA 166 (388)
T ss_pred CCEEEEcCCc-----hHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 3656654432 333445554444444344444444567777777654455666666767642 2234578899999
Q ss_pred hCCcEEEccccccccc
Q 016794 239 TGVKLITYGTVMGGLL 254 (382)
Q Consensus 239 ~gi~via~spl~~G~L 254 (382)
+|+.++.=..++.|.+
T Consensus 167 ~gi~vIvDea~~~~~~ 182 (388)
T PRK08861 167 VGALVAVDNTFLTPVL 182 (388)
T ss_pred cCCEEEEECCcccccc
Confidence 9999887666665543
No 144
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.60 E-value=56 Score=26.91 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.3
Q ss_pred CChhhhHHHHHHHhCCcEEEccccc
Q 016794 226 MRPQQKMAELCQLTGVKLITYGTVM 250 (382)
Q Consensus 226 ~~~~~~~l~~~~~~gi~via~spl~ 250 (382)
+....++++.|++.||.+++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4455789999999999999998775
No 145
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=28.18 E-value=4.1e+02 Score=25.75 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=53.9
Q ss_pred eecccCCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHH
Q 016794 128 GLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 207 (382)
Q Consensus 128 ~~tk~~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~ 207 (382)
+.+|..--+.....+.+.+.+.+-++.+|....|++++-.-.. ..+++.++.|.++.+.+.|-.+|.+|.+-..+-..
T Consensus 96 V~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g--~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 96 VGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKG--NGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred EEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 4677553222345566777776777778865456666654332 23788999998887777899999999998777554
Q ss_pred H
Q 016794 208 L 208 (382)
Q Consensus 208 ~ 208 (382)
+
T Consensus 174 l 174 (360)
T TIGR03597 174 L 174 (360)
T ss_pred H
Confidence 4
No 146
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=28.15 E-value=5.3e+02 Score=24.58 Aligned_cols=75 Identities=9% Similarity=0.076 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCccEEeccC----CcH-----HHHHHHHHcCCCeeeecccccccc--CChhhhHHHHHHHhCCcEEEc
Q 016794 178 ALNHLTDLKEEGKIKTVALTN----FDT-----ERLRIILENGIPVVSNQVQHSVVD--MRPQQKMAELCQLTGVKLITY 246 (382)
Q Consensus 178 ~~~aL~~l~~~Gkir~iGvSn----~~~-----~~l~~~~~~~~~~~~~q~~~n~~~--~~~~~~~l~~~~~~gi~via~ 246 (382)
..+-++.+..-..++.+|+.+ ..+ +.++.+.+.+.+. ++++.+|-.. .....+.+..+++.||.+...
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~-~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~q 239 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQT-VLVVHINHANEIDAEVADALAKLRNAGITLLNQ 239 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcE-EEEeeCCChHhCcHHHHHHHHHHHHcCCEEEec
Confidence 445566666777888888764 323 2333333344322 2233444211 011246788889999999999
Q ss_pred ccccccc
Q 016794 247 GTVMGGL 253 (382)
Q Consensus 247 spl~~G~ 253 (382)
+++..|.
T Consensus 240 tvllkgi 246 (321)
T TIGR03821 240 SVLLRGV 246 (321)
T ss_pred ceeeCCC
Confidence 9998875
No 147
>TIGR00035 asp_race aspartate racemase.
Probab=27.52 E-value=3.7e+02 Score=24.10 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCC-----------CcHHHHHHHHHHHHHcCCccEEeccCCcHHHH
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-----------PGYLDALNHLTDLKEEGKIKTVALTNFDTERL 204 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~-----------~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l 204 (382)
+-+++++=++..-.+.+.++++++.+++|+..+ .....+.++++.|.+.| +..|-++..+....
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 456777777777788999999999999985421 11334666677776665 89999988777654
No 148
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=27.39 E-value=3.4e+02 Score=24.07 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcH----HHHHHHHHcCCCeeee
Q 016794 142 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT----ERLRIILENGIPVVSN 217 (382)
Q Consensus 142 ~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~----~~l~~~~~~~~~~~~~ 217 (382)
..+.+.+++.++.+|.+ +.++ .+.... .++..+.++++.++| +..|=++..+. ..++++.+.|+|+..+
T Consensus 14 ~~~~~g~~~~a~~~g~~---~~~~--~~~~~d-~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYE---VEIV--FDAQND-PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHTCE---EEEE--EESTTT-HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCE---EEEe--CCCCCC-HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 56888899999999864 2222 222222 577889999999888 88888775554 5677777778775554
No 149
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=27.27 E-value=4.1e+02 Score=24.94 Aligned_cols=100 Identities=8% Similarity=0.035 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEE-ecCCCCC-CcHHH---HHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCe
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQF-HWWDYSN-PGYLD---ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 214 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~l-H~p~~~~-~~~~e---~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~ 214 (382)
+.+.+.+..++.+ .-|-|-||+=-- -+|.... ..-+| +...++.++++-.+ -|.|-++.++.++++++.|.++
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCE
Confidence 4555555544433 347777776421 1243321 11223 55567777754222 4888899999999999988543
Q ss_pred eeeccccccccCChhhhHHHHHHHhCCcEEEcc
Q 016794 215 VSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 247 (382)
Q Consensus 215 ~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~s 247 (382)
+|=+ +-+ .+.+.++.+++.|..++.+.
T Consensus 114 -INDI--~g~---~d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 114 -INDI--RSL---SEPGALEAAAETGLPVCLMH 140 (282)
T ss_pred -EEEC--CCC---CCHHHHHHHHHcCCCEEEEc
Confidence 1211 112 13367788899999988764
No 150
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=27.04 E-value=5.4e+02 Score=25.13 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=55.3
Q ss_pred HHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeecccccccc
Q 016794 146 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD 225 (382)
Q Consensus 146 ~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~ 225 (382)
.++...+..| +..=|-+++..|. ...++..+..+...-.++..-+...+.+.+++++....+..++..+.|+.-
T Consensus 87 ~Ai~~~l~al-l~~Gd~Vl~~~~~-----y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg 160 (388)
T PRK07811 87 AATDCLLRAV-LRPGDHIVIPNDA-----YGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLL 160 (388)
T ss_pred HHHHHHHHHH-hCCCCEEEEcCCC-----chHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcc
Confidence 3344444444 2334556665543 233444444332221233333333567777777654445666667777632
Q ss_pred -CChhhhHHHHHHHhCCcEEEcccccccc
Q 016794 226 -MRPQQKMAELCQLTGVKLITYGTVMGGL 253 (382)
Q Consensus 226 -~~~~~~~l~~~~~~gi~via~spl~~G~ 253 (382)
...-+.+.+.|+++|+.++.=...+.+.
T Consensus 161 ~~~dl~~I~~la~~~gi~lIvD~a~a~~~ 189 (388)
T PRK07811 161 SITDIAALAELAHDAGAKVVVDNTFASPY 189 (388)
T ss_pred eecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 2234678899999999998766555443
No 151
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.03 E-value=1.5e+02 Score=25.44 Aligned_cols=65 Identities=25% Similarity=0.273 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcC-CccEEeccCCc--HHHHHHHHHcCCCeeeeccccccccCChhhhHHHHHHHhCCcEEE
Q 016794 175 YLDALNHLTDLKEEG-KIKTVALTNFD--TERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 175 ~~e~~~aL~~l~~~G-kir~iGvSn~~--~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via 245 (382)
..+.+++|.++++.| +|..+|..|.. ...+..+. + ..+.+..|+ +...-+..+..+++.|+.++.
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll--~--~~i~~~~~~--~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL--G--VDIKIYPYD--SEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH--T---EEEEEEES--SHHHHHHHHHHHHHTT--EEE
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh--C--CceEEEEEC--CHHHHHHHHHHHHHcCCcEEE
Confidence 567888888888766 66666666644 35555555 3 333444443 122235788888889998876
No 152
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=26.99 E-value=5.8e+02 Score=24.60 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=51.4
Q ss_pred ceEEEecCCCCCCcHHHHHHHHHHH-HHcCCccEEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHHH
Q 016794 161 DMLQFHWWDYSNPGYLDALNHLTDL-KEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 238 (382)
Q Consensus 161 Dl~~lH~p~~~~~~~~e~~~aL~~l-~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~ 238 (382)
|-+++..|... .+...+... +..| ++..-+...+.+.+++++....+..++..+.|+.-. ..-+.+.+.|++
T Consensus 91 d~Vl~~~~~y~-----~t~~~~~~~~~~~G-~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~ 164 (366)
T PRK08247 91 DELIVSSDLYG-----GTYRLFEEHWKKWN-VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKK 164 (366)
T ss_pred CEEEEecCCcC-----cHHHHHHHHhhccC-ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHH
Confidence 55666655432 223333332 2233 455555555777888777544456666677887422 233678999999
Q ss_pred hCCcEEEcccccccc
Q 016794 239 TGVKLITYGTVMGGL 253 (382)
Q Consensus 239 ~gi~via~spl~~G~ 253 (382)
+|+.++.=..++.+.
T Consensus 165 ~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 165 HGLLLIVDNTFYTPV 179 (366)
T ss_pred cCCEEEEECCCcccc
Confidence 999988766554443
No 153
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=26.98 E-value=4.8e+02 Score=25.38 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=58.8
Q ss_pred EEEecCCCC----------CCcHHHHHHHHHHHHHcCCccEEecc-------CCcHHHHHHHHH--cCCCeeeecccccc
Q 016794 163 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILE--NGIPVVSNQVQHSV 223 (382)
Q Consensus 163 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~Gkir~iGvS-------n~~~~~l~~~~~--~~~~~~~~q~~~n~ 223 (382)
+-||.|+.. ...+++.+++.+.-.+... +.|-+- |.+.++..++++ .+.+..++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 567988642 1226778888877765554 444332 556777777776 36777999999999
Q ss_pred ccCCh--------hhhHHHHHHHhCCcEEEcccccc
Q 016794 224 VDMRP--------QQKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 224 ~~~~~--------~~~~l~~~~~~gi~via~spl~~ 251 (382)
+.... -....+...++||.+....+-+.
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 85432 13567777788899887765543
No 154
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=26.93 E-value=6.1e+02 Score=24.84 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCC
Q 016794 180 NHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 213 (382)
Q Consensus 180 ~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~ 213 (382)
+.++.|+++|-+-++|=|+-+.+++.++.+.|..
T Consensus 179 ~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~ 212 (382)
T PRK11170 179 EVIRKLVEAGIVVSAGHSNATYEEAKAGFRAGIT 212 (382)
T ss_pred HHHHHHHHCCcEEEeeCCcCCHHHHHHHHHcCCC
Confidence 7899999999999999999999999999986643
No 155
>PLN00191 enolase
Probab=26.68 E-value=5.2e+02 Score=26.15 Aligned_cols=96 Identities=7% Similarity=0.034 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEecc--CCcHHHHHHHHHcCCCeee
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT--NFDTERLRIILENGIPVVS 216 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvS--n~~~~~l~~~~~~~~~~~~ 216 (382)
.+++.+.+-+...++ ..++.++-.|-.. +-|+.+.+|.+..+|.-+|=- ..+++.+.++++.+ -.++
T Consensus 295 ~s~~e~i~~~~~L~~-----~y~I~~IEDPl~~-----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~-aad~ 363 (457)
T PLN00191 295 KSGDELIDLYKEFVS-----DYPIVSIEDPFDQ-----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEK-ACNA 363 (457)
T ss_pred cCHHHHHHHHHHHhh-----cCCcEEEECCCCc-----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhC-CCCE
Confidence 455555555544433 3457788777433 347788888888888877722 25688888888764 3666
Q ss_pred eccccccccC-ChhhhHHHHHHHhCCcEEE
Q 016794 217 NQVQHSVVDM-RPQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 217 ~q~~~n~~~~-~~~~~~l~~~~~~gi~via 245 (382)
+++..|-.-. ..-.++...|+++|+.++.
T Consensus 364 i~iKl~qiGGITea~~~a~lA~~~G~~~~i 393 (457)
T PLN00191 364 LLLKVNQIGTVTESIEAVKMSKAAGWGVMT 393 (457)
T ss_pred EEecccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 6666663211 1234789999999999975
No 156
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.66 E-value=5.2e+02 Score=23.95 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCc
Q 016794 74 IDINNAVNAMLHYVDAGLTTFDMADIY 100 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~~Gi~~fDTA~~Y 100 (382)
++.+...++++...+.|++.+.-.--|
T Consensus 26 P~~~~~~~~~~~l~~~Gad~iElGiPf 52 (263)
T CHL00200 26 PDIVITKKALKILDKKGADIIELGIPY 52 (263)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 567888899998899999999755444
No 157
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=26.29 E-value=2.1e+02 Score=28.21 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeeccccccccCCh-hhhHHHHHHHhC-CcEEEccccccc
Q 016794 175 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTG-VKLITYGTVMGG 252 (382)
Q Consensus 175 ~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~l~~~~~~g-i~via~spl~~G 252 (382)
..++.+.++++....-|...=+...+.+.++++++...+..+++.+-|+.-.-. -..+.+.|+++| +.++.=+.++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 455666666544444444333344466777777765556777888888764333 357888999998 999988888877
Q ss_pred ccCc
Q 016794 253 LLSE 256 (382)
Q Consensus 253 ~L~~ 256 (382)
.+..
T Consensus 184 ~~~~ 187 (386)
T PF01053_consen 184 YNQN 187 (386)
T ss_dssp TTC-
T ss_pred eeec
Confidence 6543
No 158
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=26.26 E-value=5.1e+02 Score=23.76 Aligned_cols=102 Identities=17% Similarity=0.038 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHc--CCCeee
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 216 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~--~~~~~~ 216 (382)
.+++.+.+.+++-++ -|-|+||+=. .|.. ....++..+.+..+++.-. .-|.|-+++++.++++++. |.+ -+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~-~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~-iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG-LDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKC-VV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC-CCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCc-EE
Confidence 466777777777665 5999999854 2332 2213333333333333212 2378889999999999986 633 22
Q ss_pred eccccccccC-ChhhhHHHHHHHhCCcEEEccc
Q 016794 217 NQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 248 (382)
Q Consensus 217 ~q~~~n~~~~-~~~~~~l~~~~~~gi~via~sp 248 (382)
|= .+.... .....+++.+++.|..++.+..
T Consensus 97 Ns--Is~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 97 NS--INLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred Ee--CCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 22 222211 1134677889999999988653
No 159
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=26.18 E-value=1.6e+02 Score=22.00 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=25.0
Q ss_pred CchhHHHHHHHHHHHHHHcCCCHHHHHHH
Q 016794 289 GWSQFQVLLQTLKRIASKHGVSIPVVAVR 317 (382)
Q Consensus 289 ~~~~~~~~~~~l~~ia~~~g~s~aqlaL~ 317 (382)
.++.+.+.+.+|.++|++.|++..++|.-
T Consensus 46 IP~~V~~sl~kL~~La~~N~v~feeLc~Y 74 (82)
T PF11020_consen 46 IPEKVMDSLSKLYKLAKENNVSFEELCVY 74 (82)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 45788888999999999999999998753
No 160
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=26.05 E-value=3.2e+02 Score=25.25 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhhcCCC--------------------------CcceEEEecCCCCCC--cHHHHHHHHHHHHHcCCc
Q 016794 140 TSSIVRESIDVSRRRMDVP--------------------------CLDMLQFHWWDYSNP--GYLDALNHLTDLKEEGKI 191 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d--------------------------~iDl~~lH~p~~~~~--~~~e~~~aL~~l~~~Gki 191 (382)
+++. ++.++++|++.|+. ..|+++|..|....+ ...+.++-|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 3344 67777777777753 679999998865433 14578899999999986
Q ss_pred cEEeccCCcHHHHHHHHH
Q 016794 192 KTVALTNFDTERLRIILE 209 (382)
Q Consensus 192 r~iGvSn~~~~~l~~~~~ 209 (382)
.|=+.+|+...+.+..+
T Consensus 191 -tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 -TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred -EEEEEeCCcHHhHhhCC
Confidence 57777888877776654
No 161
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.02 E-value=4.3e+02 Score=25.66 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHc-CC---ccEEecc--CCcHHHHHHHHH--cCCCeeeeccccccccCC-----hh---hhHHHHHHH
Q 016794 175 YLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDMR-----PQ---QKMAELCQL 238 (382)
Q Consensus 175 ~~e~~~aL~~l~~~-Gk---ir~iGvS--n~~~~~l~~~~~--~~~~~~~~q~~~n~~~~~-----~~---~~~l~~~~~ 238 (382)
+++..+++.+..+. |+ +-|+=+. |.+.+++.++.+ .+.++.++-++||+.... .. ..+.+..++
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 77888888776554 32 1233222 668888888776 356788899999986431 11 357777889
Q ss_pred hCCcEEEcccccc
Q 016794 239 TGVKLITYGTVMG 251 (382)
Q Consensus 239 ~gi~via~spl~~ 251 (382)
+||.+......+.
T Consensus 305 ~gi~~tiR~~~G~ 317 (344)
T PRK14464 305 RGVLTKVRNSAGQ 317 (344)
T ss_pred CCceEEEECCCCC
Confidence 9999988877654
No 162
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.94 E-value=6.1e+02 Score=24.85 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=57.3
Q ss_pred eEEEecCCCCCCcHHHHHHHHHHHHHc------CCccEEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHH
Q 016794 162 MLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAE 234 (382)
Q Consensus 162 l~~lH~p~~~~~~~~e~~~aL~~l~~~------Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~ 234 (382)
++++-.|-+... .++-++.+.+|.+. +.=-..|=|.++.+.+.++++.+ -.+++|...+-.-. ..-..+.+
T Consensus 229 ~~~iEqP~~~~d-~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~-a~div~~kl~k~GGIt~a~kia~ 306 (369)
T cd03314 229 PLRIEGPMDAGS-REAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG-AAHMVQIKTPDLGGIDNTIDAVL 306 (369)
T ss_pred cEEEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC-CCCEEEecchhcCCHHHHHHHHH
Confidence 457777654322 22356777778776 33345567778899999998865 37778887664311 12357899
Q ss_pred HHHHhCCcEEEccc
Q 016794 235 LCQLTGVKLITYGT 248 (382)
Q Consensus 235 ~~~~~gi~via~sp 248 (382)
.|+.+||.++..+.
T Consensus 307 lA~a~Gi~~~~h~~ 320 (369)
T cd03314 307 YCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHcCCcEEEeCC
Confidence 99999999997643
No 163
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=25.92 E-value=99 Score=24.60 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcC
Q 016794 75 DINNAVNAMLHYVDAGLTTFDMADIYG 101 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDTA~~YG 101 (382)
+.+.+.+....+++.|++.||.+..|-
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 456788888889999999999999983
No 164
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=25.89 E-value=1.2e+02 Score=19.96 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcC
Q 016794 300 LKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML 349 (382)
Q Consensus 300 l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~ 349 (382)
|++||+..|+|++-+. .+|+.+.- +...+ .+++.+.++.++.
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~~~----vs~~t--r~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGPPR----VSEET--RERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTCSS----STHHH--HHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCCCC----CCHHH--HHHHHHHHHHHCC
Confidence 6789999999987654 44554432 44444 6777776665543
No 165
>PRK02866 cyanate hydratase; Validated
Probab=25.70 E-value=1.2e+02 Score=25.53 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHHHHHHHHHH
Q 016794 298 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 362 (382)
Q Consensus 298 ~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e~~~~l~~~ 362 (382)
+.|.+.-.+.|+|.+++|=+=-++.-.+++++-|..+.++++.+...+.+ .|+++....|...
T Consensus 8 e~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~L--gL~~~~~~~l~~~ 70 (147)
T PRK02866 8 EKILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELL--GLDEDAVALLQEV 70 (147)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CCCHHHHHHHhcC
Confidence 44445555567777777666556666666677777766688888777765 7999988777764
No 166
>PRK09726 antitoxin HipB; Provisional
Probab=25.66 E-value=84 Score=23.58 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCH
Q 016794 297 LQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDE 353 (382)
Q Consensus 297 ~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~ 353 (382)
...++.+..+.|+|..++|-.--++++.+.-..-|.+..+++.+...+.+++.+++-
T Consensus 14 ~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~ 70 (88)
T PRK09726 14 ANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTL 70 (88)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcch
Confidence 356777777788888887776666655554444444333367777777776655443
No 167
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=25.64 E-value=2.9e+02 Score=24.52 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=54.6
Q ss_pred hcCCCCcceEEEe-cCCCCCCc----HHHHHHHHHHHHH--cCCccEEeccCCcHHHHHHHHHcCCCeeeeccccccccC
Q 016794 154 RMDVPCLDMLQFH-WWDYSNPG----YLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM 226 (382)
Q Consensus 154 ~Lg~d~iDl~~lH-~p~~~~~~----~~e~~~aL~~l~~--~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~ 226 (382)
.-|-|+||+=--- +|...... ++.+...++.+++ .+. -+.|-++.++.++++++.|.++..+...+..
T Consensus 30 ~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~g~~~ind~~~~~~--- 104 (210)
T PF00809_consen 30 EAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKAGADIINDISGFED--- 104 (210)
T ss_dssp HTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHHTSSEEEETTTTSS---
T ss_pred HhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHcCcceEEecccccc---
Confidence 3478888873211 12211111 2334555555554 232 5777899999999999887665444433332
Q ss_pred ChhhhHHHHHHHhCCcEEEcccc
Q 016794 227 RPQQKMAELCQLTGVKLITYGTV 249 (382)
Q Consensus 227 ~~~~~~l~~~~~~gi~via~spl 249 (382)
..++++.++++|..++++.--
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 458999999999999986644
No 168
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=25.22 E-value=4.3e+02 Score=26.05 Aligned_cols=81 Identities=10% Similarity=0.048 Sum_probs=57.1
Q ss_pred ceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHHH
Q 016794 161 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 238 (382)
Q Consensus 161 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~ 238 (382)
|+.++-.|-+ .++.|.+|++...+- ..|=|-++.+++..+++.+ -++++|......-. ..-..+...|+.
T Consensus 239 ~l~~iEeP~~-------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdil~~d~~~~GGit~~~kia~~A~~ 310 (395)
T cd03323 239 VLAYLEDPCG-------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDIPLADHHFWGGMRGSVRVAQVCET 310 (395)
T ss_pred CCCEEECCCC-------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcEEeeccccccCHHHHHHHHHHHHH
Confidence 5666666643 367788888887666 5666777888888888765 37777777654211 123578999999
Q ss_pred hCCcEEEcccc
Q 016794 239 TGVKLITYGTV 249 (382)
Q Consensus 239 ~gi~via~spl 249 (382)
+||.+..++..
T Consensus 311 ~gi~~~~h~~~ 321 (395)
T cd03323 311 WGLGWGMHSNN 321 (395)
T ss_pred cCCeEEEecCc
Confidence 99999887754
No 169
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=25.16 E-value=3.3e+02 Score=25.31 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=45.1
Q ss_pred cCCCCcceEEEecCCC-------CCCcHHHHHHHHH----HHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeecccccc
Q 016794 155 MDVPCLDMLQFHWWDY-------SNPGYLDALNHLT----DLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 223 (382)
Q Consensus 155 Lg~d~iDl~~lH~p~~-------~~~~~~e~~~aL~----~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~ 223 (382)
+.++.+|.+++---|. ....-.+..++++ ..++.|| .+|+...+++...++++.|..+.++.....+
T Consensus 165 ~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~ 242 (267)
T PRK10128 165 LDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFVAVGVDTML 242 (267)
T ss_pred hCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEEEEChHHHH
Confidence 4567889888754221 1111233444444 4677888 5787777889999999989888888777776
Q ss_pred c
Q 016794 224 V 224 (382)
Q Consensus 224 ~ 224 (382)
+
T Consensus 243 l 243 (267)
T PRK10128 243 Y 243 (267)
T ss_pred H
Confidence 5
No 170
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=24.89 E-value=1e+02 Score=23.91 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=36.7
Q ss_pred cCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHHHhCCcEEEccccccc
Q 016794 197 TNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 197 Sn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~spl~~G 252 (382)
|.++...++++++.+ .++++|+.....-. ..-..+.+.|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~-a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAG-AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTT-SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcC-CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 457788888888865 36777776443211 1224789999999999999886 444
No 171
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=24.80 E-value=3.9e+02 Score=25.92 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=57.4
Q ss_pred CCcceEE-EecCCCC----------CCcHHHHHHHHHHHHH-cCC---ccEEecc--CCcHHHHHHHHHc--CC-----C
Q 016794 158 PCLDMLQ-FHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILEN--GI-----P 213 (382)
Q Consensus 158 d~iDl~~-lH~p~~~----------~~~~~e~~~aL~~l~~-~Gk---ir~iGvS--n~~~~~l~~~~~~--~~-----~ 213 (382)
.++||.+ ||.++.. ...+++.++++.+..+ .|. |+++=+. |.+.++++++.+. +. .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 4578765 7877432 1226677777666555 342 3344333 4566677766651 22 4
Q ss_pred eeeeccccccccCC------hh----hhHHHHHHHhCCcEEEcccccc
Q 016794 214 VVSNQVQHSVVDMR------PQ----QKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 214 ~~~~q~~~n~~~~~------~~----~~~l~~~~~~gi~via~spl~~ 251 (382)
..++-++||++... +. ..+.++.+++|+.+......+.
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 67888899986432 11 3577788899999988776654
No 172
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.69 E-value=3.8e+02 Score=26.21 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=57.5
Q ss_pred EEEecCCCC-----------CCcHHHHHHHHHH-HHHcC---CccEEecc--CCcHHHHHHHHH--cCCCeeeecccccc
Q 016794 163 LQFHWWDYS-----------NPGYLDALNHLTD-LKEEG---KIKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSV 223 (382)
Q Consensus 163 ~~lH~p~~~-----------~~~~~e~~~aL~~-l~~~G---kir~iGvS--n~~~~~l~~~~~--~~~~~~~~q~~~n~ 223 (382)
+-||.+++. ...++++++++.+ +.+.| +|+++=+. |.+.+++.++.+ .+.++.++-++||+
T Consensus 238 iSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~ 317 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNS 317 (368)
T ss_pred EEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeecc
Confidence 567886431 2237888888875 45556 34455444 456666666665 24456778888998
Q ss_pred ccCCh--------hhhHHHHHHHhCCcEEEcccccc
Q 016794 224 VDMRP--------QQKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 224 ~~~~~--------~~~~l~~~~~~gi~via~spl~~ 251 (382)
+.... -..+.+.++++|+.+......+.
T Consensus 318 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 318 IVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 75421 13577788899999998776654
No 173
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.55 E-value=5.8e+02 Score=24.87 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=56.2
Q ss_pred EecCCCCC----------CcHHHHHHHHHHHH-HcCC---ccEEecc--CCcHHHHHHHHH--cCCCeeeeccccccccC
Q 016794 165 FHWWDYSN----------PGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDM 226 (382)
Q Consensus 165 lH~p~~~~----------~~~~e~~~aL~~l~-~~Gk---ir~iGvS--n~~~~~l~~~~~--~~~~~~~~q~~~n~~~~ 226 (382)
||.+++.. ..++++++++.+.. +.|+ |+|+=|. |.+.++++++.+ .+.+..++-++||+...
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~ 305 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEG 305 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCC
Confidence 89886431 12577888887554 4443 4455444 456788777765 24567888899998642
Q ss_pred ----Chh----hhHHHHHHHhCCcEEEcccccc
Q 016794 227 ----RPQ----QKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 227 ----~~~----~~~l~~~~~~gi~via~spl~~ 251 (382)
.+. ..+.+..+++||.+......+.
T Consensus 306 ~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 306 SKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 122 2356667788999988766654
No 174
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=24.26 E-value=51 Score=33.15 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=22.5
Q ss_pred HHHHcCCCHHHHHHHHHHhCC-CceeEeeC
Q 016794 303 IASKHGVSIPVVAVRYILDQP-AVAGSMIG 331 (382)
Q Consensus 303 ia~~~g~s~aqlaL~w~l~~~-~v~~~i~G 331 (382)
+|..||+|..--.|+|++... --.+.++|
T Consensus 112 VaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 112 VAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred EeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 356689999999999999987 34455666
No 175
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=24.18 E-value=2.8e+02 Score=24.44 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=49.3
Q ss_pred CcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeeccccc-cccCChhhhHHHHHH
Q 016794 159 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQ 237 (382)
Q Consensus 159 ~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n-~~~~~~~~~~l~~~~ 237 (382)
-..+..+.++. .. +...+|.+.|- ..+-+.-.+.+.|.++.+ |....+.-+... .-.......++++|+
T Consensus 22 ~~~V~~l~R~~-----~~---~~~~~l~~~g~-~vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa~ 91 (233)
T PF05368_consen 22 GFSVRALVRDP-----SS---DRAQQLQALGA-EVVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAAK 91 (233)
T ss_dssp TGCEEEEESSS-----HH---HHHHHHHHTTT-EEEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecc-----ch---hhhhhhhcccc-eEeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhhh
Confidence 35666666643 11 12444556665 455555557778887775 545444444433 222223468999999
Q ss_pred HhCCcEEEccccccc
Q 016794 238 LTGVKLITYGTVMGG 252 (382)
Q Consensus 238 ~~gi~via~spl~~G 252 (382)
+.||..+.+|-++..
T Consensus 92 ~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 92 AAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHT-SEEEESEESSG
T ss_pred ccccceEEEEEeccc
Confidence 999999999988664
No 176
>PRK00077 eno enolase; Provisional
Probab=24.01 E-value=7.3e+02 Score=24.74 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcC--CccEEeccC--CcHHHHHHHHHcCCCe
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVALTN--FDTERLRIILENGIPV 214 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G--kir~iGvSn--~~~~~l~~~~~~~~~~ 214 (382)
.+++....-+.+.++. .+++++-.|-+.. -|+.+.+|.+.- +|.-.|=-. .+++.++.+++.+ -.
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~-----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~-a~ 329 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN-----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKG-AA 329 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc-----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhC-CC
Confidence 3555555555555544 4577888775433 366677777664 565555332 3689999988765 36
Q ss_pred eeeccccccccC-ChhhhHHHHHHHhCCcEEE
Q 016794 215 VSNQVQHSVVDM-RPQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 215 ~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via 245 (382)
+++|+..+-.-. ..-.++...|+.+|+.++.
T Consensus 330 d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 330 NSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 677776664311 1234788999999998664
No 177
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=23.81 E-value=6.3e+02 Score=23.97 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=19.1
Q ss_pred HHHHHHHHHHc-CCccEEeccCCcHHHHHHHHHcC
Q 016794 178 ALNHLTDLKEE-GKIKTVALTNFDTERLRIILENG 211 (382)
Q Consensus 178 ~~~aL~~l~~~-Gkir~iGvSn~~~~~l~~~~~~~ 211 (382)
..+.++.++++ |..-.+.+...+.+.+..+.+.|
T Consensus 86 ~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG 120 (322)
T TIGR03550 86 LRELCELALEETGLLPHTNPGVMSRDELARLKPVN 120 (322)
T ss_pred HHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhC
Confidence 33444445544 55555555566777777666644
No 178
>PRK09248 putative hydrolase; Validated
Probab=23.65 E-value=5.5e+02 Score=23.16 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=44.0
Q ss_pred CCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccC-----CcHHH-HHHHHHcCCCeeeecccc---ccccCCh
Q 016794 158 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-----FDTER-LRIILENGIPVVSNQVQH---SVVDMRP 228 (382)
Q Consensus 158 d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn-----~~~~~-l~~~~~~~~~~~~~q~~~---n~~~~~~ 228 (382)
||+ ++-+|..........+..+.+.++.+.|.+--+|=-. ..... ++.+.+.|..+.++-..+ ..-...+
T Consensus 95 D~v-i~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~~lEvN~~~l~~~~~g~~~~ 173 (246)
T PRK09248 95 DIV-IAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNVALEINNSSFGHSRKGSEDN 173 (246)
T ss_pred CEE-EEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCCCCcccHHHHHHHHHHhCCEEEEECCCCccCCCCCcCh
Confidence 444 4456765322112333455555556888887776332 12233 344545554333332221 0001124
Q ss_pred hhhHHHHHHHhCCcEEE
Q 016794 229 QQKMAELCQLTGVKLIT 245 (382)
Q Consensus 229 ~~~~l~~~~~~gi~via 245 (382)
...++..+.+.|+.++.
T Consensus 174 ~~~~~~~~~~~g~~~~~ 190 (246)
T PRK09248 174 CRAIAALCKKAGVWVAL 190 (246)
T ss_pred HHHHHHHHHHcCCeEEE
Confidence 45788999999987654
No 179
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.59 E-value=5e+02 Score=22.70 Aligned_cols=147 Identities=12% Similarity=0.063 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhc--CCccceeeEeeecccCCCCCCCCHHHHHHHHHHHH
Q 016794 75 DINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRE--RPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 152 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~--~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL 152 (382)
|.+++.+.+..+++.|++..|.- ++++..++....+- .. ++. +. . ..+..+.+++.+....
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~------~~~l~p~m~~iG~~w~~g-ei~----va-----~-~~~a~~~~~~~l~~l~ 72 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI------EKGLMAGMGVVGKLFEDG-ELF----LP-----H-VMMSADAMLAGIKVLT 72 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH------HHHHHHHHHHHHHHHcCC-Ccc----HH-----H-HHHHHHHHHHHHHHHH
Confidence 67899999999999998766532 22344444432211 00 110 00 0 0112344555555544
Q ss_pred hhcCCC----CcceEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEeccCCcHHHHHHHHHcCCCeeeeccccccccCC
Q 016794 153 RRMDVP----CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR 227 (382)
Q Consensus 153 ~~Lg~d----~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gk-ir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~~ 227 (382)
..+..+ .---+++-.+..+..++ ...-.-.-++..|. |.++|... +.+.+.+.+.. ..|+++.+-.......
T Consensus 73 ~~~~~~~~~~~~~~vv~~t~~gd~H~l-G~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~-~~pd~v~lS~~~~~~~ 149 (197)
T TIGR02370 73 PEMEKAVETEVLGKVVCGVAEGDVHDI-GKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKK-EKPLMLTGSALMTTTM 149 (197)
T ss_pred HHhhccccCCCCCeEEEEeCCCchhHH-HHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHH-cCCCEEEEccccccCH
Confidence 444321 11123444443332212 22222334556663 56678655 66666665543 3466666665442221
Q ss_pred -hhhhHHHHHHHhCC
Q 016794 228 -PQQKMAELCQLTGV 241 (382)
Q Consensus 228 -~~~~~l~~~~~~gi 241 (382)
.-.++++.+++.|+
T Consensus 150 ~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 150 YGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHHHHHHHcCC
Confidence 22578888888864
No 180
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.49 E-value=2.7e+02 Score=24.89 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCC-cHHHHHHHHHcCCCeeeec
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 218 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~~~~~~~~~q 218 (382)
+++...+-++ .|..-|++.|.+= +- ..+..+++++++++.-=..||..+. +.++++.+.+.|-.|.+
T Consensus 25 ~~~~a~~i~~-al~~~Gi~~iEit---l~------~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv-- 92 (212)
T PRK05718 25 KLEDAVPLAK-ALVAGGLPVLEVT---LR------TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV-- 92 (212)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEEe---cC------CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE--
Confidence 4455544443 3455565555543 21 1234555666665533356777763 56788888888865543
Q ss_pred cccccccCChhhhHHHHHHHhCCcEE
Q 016794 219 VQHSVVDMRPQQKMAELCQLTGVKLI 244 (382)
Q Consensus 219 ~~~n~~~~~~~~~~l~~~~~~gi~vi 244 (382)
+ +....+++++|++.+|.++
T Consensus 93 ---s---P~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 93 ---S---PGLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred ---C---CCCCHHHHHHHHHcCCCEe
Confidence 2 2233489999999998887
No 181
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.37 E-value=6.7e+02 Score=24.09 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=57.5
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEeccCCcHHHHHHHHHcCCCeeeecccccccc-CChhhhHHHHHH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQ 237 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~l~~~~ 237 (382)
.++.++-.|-+.. -++.+.+|+++.-+. +.|=|.++...+..+++.+ -++++|.....+- ...-..+.+.|+
T Consensus 202 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~v~~d~~~~GGit~~~~~~~lA~ 275 (352)
T cd03325 202 YRLLFIEEPVLPE-----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDG-AVDIIQPDISHAGGITELKKIAAMAE 275 (352)
T ss_pred cCCcEEECCCCcc-----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 4566777665322 377788888876665 5566778899999988765 3778888755431 112357999999
Q ss_pred HhCCcEEEcc
Q 016794 238 LTGVKLITYG 247 (382)
Q Consensus 238 ~~gi~via~s 247 (382)
++||.++.++
T Consensus 276 ~~gi~~~~h~ 285 (352)
T cd03325 276 AYDVALAPHC 285 (352)
T ss_pred HcCCcEeccC
Confidence 9999998655
No 182
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=23.23 E-value=5.5e+02 Score=23.04 Aligned_cols=140 Identities=9% Similarity=0.000 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCcEEeCCCCc---ChHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHHHh
Q 016794 77 NNAVNAMLHYVDAGLTTFDMADIY---GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 153 (382)
Q Consensus 77 ~~~~~~l~~A~~~Gi~~fDTA~~Y---G~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL~ 153 (382)
....+++..|.+.|+..|=.+++. ...+.. .+.++ +. .++. +-...+ ..++.+.+-++..
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~-~~~~~-----~i-~Il~----GiEi~~----~~~~~~~~~~~~~-- 78 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPESKPE-LEDLL-----GF-EIFR----GVEIVA----SNPSKLRGLVGKF-- 78 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccchhHH-HHHhc-----CC-cEEe----eEEEec----CCHHHHHHHHHhc--
Confidence 467899999999999987555553 221111 11111 11 1211 111211 2344444433332
Q ss_pred hcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccC-------CcHHHHHHHHHcCCCeeeecccc-cc-c
Q 016794 154 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-------FDTERLRIILENGIPVVSNQVQH-SV-V 224 (382)
Q Consensus 154 ~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn-------~~~~~l~~~~~~~~~~~~~q~~~-n~-~ 224 (382)
.+.+|++.+| |. .+++. ..+.+.+.|.-||--. +....++.+.+.++-+.++-.++ +. .
T Consensus 79 ---~~~~d~v~v~-~~-----~~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~~~~~~ 146 (237)
T PRK00912 79 ---RKKVDVLAVH-GG-----DEKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDILKSRG 146 (237)
T ss_pred ---cCcccEEEEe-CC-----CHHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHhhhhcc
Confidence 2357888888 21 12222 3578889999988653 23344455556664444433321 10 0
Q ss_pred c-C----ChhhhHHHHHHHhCCcEEE
Q 016794 225 D-M----RPQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 225 ~-~----~~~~~~l~~~~~~gi~via 245 (382)
. + .+...++..|++.|+.++.
T Consensus 147 ~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 147 GRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 0 0 1224789999999988874
No 183
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=23.20 E-value=5.3e+02 Score=25.22 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHHcCCCeeeecccccccc-CChhhhHHHHHHHhCCcEEEccccccc
Q 016794 198 NFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 198 n~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~l~~~~~~gi~via~spl~~G 252 (382)
..+.+.+++++....+..++..+-|+.- ....+++.+.|+++|+.++.=...+.+
T Consensus 124 ~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred CCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 3445555555543334445555555421 122346667777777766654444433
No 184
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=23.03 E-value=5.5e+02 Score=23.01 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=27.6
Q ss_pred CeeeeccccccccCChhhhHHHHHHHhCCcEEEc
Q 016794 213 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 246 (382)
Q Consensus 213 ~~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~ 246 (382)
.+.++==+||++|+....++.+..++.|+.|+..
T Consensus 185 ~Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 185 AIVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred eEEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 3555556799988888889999999999999853
No 185
>PRK10200 putative racemase; Provisional
Probab=22.96 E-value=5.5e+02 Score=23.11 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCC-----------CcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHH
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-----------PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 208 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~-----------~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~ 208 (382)
+-++.++=++..-.+.+.|++|.+.+|.++..+ .......+.++.|.+.| +..|-+...+.......+
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~l 93 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVADAI 93 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHHHH
Confidence 456777777777888999999999999975321 11455677778888887 789998877766554433
Q ss_pred H
Q 016794 209 E 209 (382)
Q Consensus 209 ~ 209 (382)
+
T Consensus 94 ~ 94 (230)
T PRK10200 94 E 94 (230)
T ss_pred H
Confidence 3
No 186
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.80 E-value=4.7e+02 Score=25.45 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHHHhCCcEEEccccccc
Q 016794 199 FDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~spl~~G 252 (382)
.+.+.++++++.+.+..++..+.|+.-. ..-+.+.+.|+++|+.++.=...+.+
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~ 173 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSP 173 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccc
Confidence 3555565555433344555555555321 12346777777777777755544444
No 187
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=22.76 E-value=1.7e+02 Score=25.13 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCCCCc----ceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHc-CC--Ceee
Q 016794 144 VRESIDVSRRRMDVPCL----DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI--PVVS 216 (382)
Q Consensus 144 i~~~~e~SL~~Lg~d~i----Dl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~-~~--~~~~ 216 (382)
.+..++..++++|.+.- +.+.-.+. ...+ ..++.+.|+.|++.| ++-.-+||.+...+...++. |+ .|+.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~ 137 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYL-RLPP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAGLDDPFDA 137 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cCCC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCCChhhhhe
Confidence 35666677777776521 11111111 1112 456778899999988 55666888787777766653 43 2333
Q ss_pred eccccccccCChhhh-HHHHHHHhCCc
Q 016794 217 NQVQHSVVDMRPQQK-MAELCQLTGVK 242 (382)
Q Consensus 217 ~q~~~n~~~~~~~~~-~l~~~~~~gi~ 242 (382)
+-..-.+-..++..+ ....|++.|+.
T Consensus 138 i~~s~~~~~~KP~~~~~~~~~~~~~~~ 164 (198)
T TIGR01428 138 VLSADAVRAYKPAPQVYQLALEALGVP 164 (198)
T ss_pred eEehhhcCCCCCCHHHHHHHHHHhCCC
Confidence 222111112344333 44455566653
No 188
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=22.66 E-value=6.3e+02 Score=25.94 Aligned_cols=94 Identities=9% Similarity=-0.082 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeecccc
Q 016794 142 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 221 (382)
Q Consensus 142 ~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~ 221 (382)
+.+.+..++- ..-|-|.||+=.- ...+..+.+...++.+++...+ -|.|-+++++.++++++.|.++ +|-+
T Consensus 165 ~~i~~~A~~~-~~~GADIIDIG~~----st~p~~~~v~~~V~~l~~~~~~-pISIDT~~~~v~eaAL~aGAdi-INsV-- 235 (499)
T TIGR00284 165 DGIEGLAARM-ERDGADMVALGTG----SFDDDPDVVKEKVKTALDALDS-PVIADTPTLDELYEALKAGASG-VIMP-- 235 (499)
T ss_pred HHHHHHHHHH-HHCCCCEEEECCC----cCCCcHHHHHHHHHHHHhhCCC-cEEEeCCCHHHHHHHHHcCCCE-EEEC--
Confidence 4444443333 3558888887532 1122244566677777766332 4888999999999999887442 2211
Q ss_pred ccccCChhhhHHHHHHHhCCcEEEcc
Q 016794 222 SVVDMRPQQKMAELCQLTGVKLITYG 247 (382)
Q Consensus 222 n~~~~~~~~~~l~~~~~~gi~via~s 247 (382)
+. .....+++.+++.|..++.+.
T Consensus 236 s~---~~~d~~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 236 DV---ENAVELASEKKLPEDAFVVVP 258 (499)
T ss_pred Cc---cchhHHHHHHHHcCCeEEEEc
Confidence 11 112367777888888877653
No 189
>PF14502 HTH_41: Helix-turn-helix domain
Probab=22.44 E-value=79 Score=21.14 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCC--HHHHHHHHHHhCCCce
Q 016794 298 QTLKRIASKHGVS--IPVVAVRYILDQPAVA 326 (382)
Q Consensus 298 ~~l~~ia~~~g~s--~aqlaL~w~l~~~~v~ 326 (382)
+.+.+++++++++ ..|-||.++-..+.|.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 6778889999886 6899999999988874
No 190
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.43 E-value=4.1e+02 Score=26.07 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=53.8
Q ss_pred EEecCCCCC----------CcHHHHHHHHHHHHHcC-------CccEEecc--CCcHHHHHHHHH--cCCCeeeeccccc
Q 016794 164 QFHWWDYSN----------PGYLDALNHLTDLKEEG-------KIKTVALT--NFDTERLRIILE--NGIPVVSNQVQHS 222 (382)
Q Consensus 164 ~lH~p~~~~----------~~~~e~~~aL~~l~~~G-------kir~iGvS--n~~~~~l~~~~~--~~~~~~~~q~~~n 222 (382)
-||.+++.. ..+++.++++.+..++- .|||+=|. |.+.+.++++.+ .+.+..++-++||
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN 300 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWN 300 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCC
Confidence 389876421 12567777766555433 35555555 456777777665 2455688889999
Q ss_pred cccCC----hh----hhHHHHHHHhCCcEEEccccc
Q 016794 223 VVDMR----PQ----QKMAELCQLTGVKLITYGTVM 250 (382)
Q Consensus 223 ~~~~~----~~----~~~l~~~~~~gi~via~spl~ 250 (382)
++... +. ..+.+..+++|+.+......+
T Consensus 301 ~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G 336 (372)
T PRK11194 301 PFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRG 336 (372)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 86421 11 246667788899998765444
No 191
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=22.38 E-value=4.5e+02 Score=27.68 Aligned_cols=95 Identities=8% Similarity=-0.011 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEecc-CCcHHHHHHHHHcCCCeeeecc
Q 016794 141 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQV 219 (382)
Q Consensus 141 ~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvS-n~~~~~l~~~~~~~~~~~~~q~ 219 (382)
.+.++.+ ..+|.|++=+.+...-..... .+.....+.+....-.++.+||- |-+++.+.++.+. ..++++|+
T Consensus 13 ~eda~~a-----~~~gaD~iGfIf~~~SpR~V~-~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-~~ld~vQL 85 (610)
T PRK13803 13 SALISKA-----VDMLPDFIGFIFYEKSPRFVG-NKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-NGIDFVQL 85 (610)
T ss_pred HHHHHHH-----HHcCCCEEEEEecCCCCCCCC-HHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEE
Confidence 4455544 348999999875543222222 33314444444433457889985 7788888888764 46899999
Q ss_pred ccccccCChhhhHHHHHHHhCCcEE
Q 016794 220 QHSVVDMRPQQKMAELCQLTGVKLI 244 (382)
Q Consensus 220 ~~n~~~~~~~~~~l~~~~~~gi~vi 244 (382)
.-+.- ......+...++.++.++
T Consensus 86 HG~e~--~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 86 HGAES--KAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred CCCCC--cccHHHHHHhhhcCCcEE
Confidence 75431 111233444444455554
No 192
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=22.30 E-value=8.6e+02 Score=24.95 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=47.9
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHH------------------HcCCccEEeccC------CcHHHHHHHHHc-CCCe
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLK------------------EEGKIKTVALTN------FDTERLRIILEN-GIPV 214 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~------------------~~Gkir~iGvSn------~~~~~l~~~~~~-~~~~ 214 (382)
++++.+|.|..........-.+++.++ ..++|--||.++ .+..+++++++. |+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 689999999765432222222333332 245688888774 345667777663 4332
Q ss_pred eee--------------cccccccc-CChhhhHHHHHH-HhCCcEEEccccc
Q 016794 215 VSN--------------QVQHSVVD-MRPQQKMAELCQ-LTGVKLITYGTVM 250 (382)
Q Consensus 215 ~~~--------------q~~~n~~~-~~~~~~~l~~~~-~~gi~via~spl~ 250 (382)
-.+ ...+|+.- ++....+-++.+ +.|+.++...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 211 11234322 112223445554 4588887767764
No 193
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=22.19 E-value=8e+02 Score=24.53 Aligned_cols=123 Identities=9% Similarity=0.071 Sum_probs=65.1
Q ss_pred CChHHHHHHHHHHHH-cCCcEEeCCCC--cChHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHH
Q 016794 74 IDINNAVNAMLHYVD-AGLTTFDMADI--YGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 150 (382)
Q Consensus 74 ~~~~~~~~~l~~A~~-~Gi~~fDTA~~--YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~ 150 (382)
.+.++..+++.+..+ .||+-+=-+.. .=.+...|-..++.+.. -+ . +..+.+.|+..- ..|..+...+-+
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~-Ip-h-V~~IRI~TR~pv----v~P~RIT~ell~ 210 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRA-IP-H-VEVIRIGTRVPV----VLPQRITDELVA 210 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhh-cC-C-CceEEEeecccc----ccccccCHHHHH
Confidence 456777888877665 48874422211 10133333333333211 00 1 112333555321 123344445555
Q ss_pred HHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEec-------cCCcHHHHHHHHH
Q 016794 151 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL-------TNFDTERLRIILE 209 (382)
Q Consensus 151 SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGv-------Sn~~~~~l~~~~~ 209 (382)
.|++.+ .-.+.+|.-.+... .+++.+|++.|++.|.. +|. -|.+++.+.++.+
T Consensus 211 ~Lk~~~---~~~v~~h~nhp~Ei-t~~a~~Al~~L~~aGI~--l~nQsVLLkGVND~~~~l~~L~~ 270 (417)
T TIGR03820 211 ILKKHH---PVWLNTHFNHPREI-TASSKKALAKLADAGIP--LGNQSVLLAGVNDCPRIMKKLVH 270 (417)
T ss_pred HHHhcC---CeEEEEeCCChHhC-hHHHHHHHHHHHHcCCE--EEeeceEECCcCCCHHHHHHHHH
Confidence 566665 34556787665444 78999999999999953 332 2567777766554
No 194
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=22.00 E-value=3.3e+02 Score=26.65 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=13.8
Q ss_pred hhHHHHHHHhCCcEEEcc
Q 016794 230 QKMAELCQLTGVKLITYG 247 (382)
Q Consensus 230 ~~~l~~~~~~gi~via~s 247 (382)
+.+++.|+++||.++.-+
T Consensus 61 ~~~L~~~~~~gIkvI~Na 78 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITNA 78 (362)
T ss_pred HHHHHHHHhCCCCEEEeC
Confidence 467888888888888653
No 195
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=21.98 E-value=2.2e+02 Score=26.84 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHcCC---cEEeCCCCc
Q 016794 76 INNAVNAMLHYVDAGL---TTFDMADIY 100 (382)
Q Consensus 76 ~~~~~~~l~~A~~~Gi---~~fDTA~~Y 100 (382)
-..|.++++.|=+-|. +||||+..|
T Consensus 136 yRKAlRlm~~AekF~lPiitfIDT~GAy 163 (317)
T COG0825 136 YRKALRLMKLAEKFGLPIITFIDTPGAY 163 (317)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCC
Confidence 3578888888988874 689999999
No 196
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=21.97 E-value=2.1e+02 Score=25.71 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=35.2
Q ss_pred HcCCCHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhh
Q 016794 306 KHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 347 (382)
Q Consensus 306 ~~g~s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~ 347 (382)
+...|=.++|+.|++.++....++.|+.-+..+|.-.|+.-+
T Consensus 74 eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~nl~ll 115 (212)
T COG1564 74 EKDSTDLELALDEALERGADEIVILGALGGRLDHALANLFLL 115 (212)
T ss_pred hhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHH
Confidence 456788999999999999988888888877789988887654
No 197
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=21.97 E-value=7e+02 Score=23.78 Aligned_cols=103 Identities=10% Similarity=0.096 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHH-HcCCcEEeCCCCcCh----HHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHH
Q 016794 75 DINNAVNAMLHYV-DAGLTTFDMADIYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 149 (382)
Q Consensus 75 ~~~~~~~~l~~A~-~~Gi~~fDTA~~YG~----sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e 149 (382)
+.++..+++.+.- ..||+.+--+. |. .+..+-+.+.++..- ..+..+.+.|+.. ...+..|...+-
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~~~d~~L~~ll~~l~~i---~~~~~iri~tr~~----~~~p~rit~el~ 196 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSG--GDPLMAKDHRLDWLLNLLEQI---PHLKRLRIHTRLP----VVIPDRITSGLC 196 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeC--cccccCCchHHHHHHHHHHhC---CCCcEEEEecCcc----eeeHHHhhHHHH
Confidence 3455566565544 34787665333 42 233344444332211 1112233344322 123456666666
Q ss_pred HHHhhcCCCCcceE-EEecCCCCCCcHHHHHHHHHHHHHcCC
Q 016794 150 VSRRRMDVPCLDML-QFHWWDYSNPGYLDALNHLTDLKEEGK 190 (382)
Q Consensus 150 ~SL~~Lg~d~iDl~-~lH~p~~~~~~~~e~~~aL~~l~~~Gk 190 (382)
+.|++.|. +.+ .+|--.+... .+++.++++.|++.|.
T Consensus 197 ~~L~~~~~---~~~~~~h~dh~~Ei-~d~~~~ai~~L~~~Gi 234 (321)
T TIGR03821 197 DLLANSRL---QTVLVVHINHANEI-DAEVADALAKLRNAGI 234 (321)
T ss_pred HHHHhcCC---cEEEEeeCCChHhC-cHHHHHHHHHHHHcCC
Confidence 66776664 344 3465333222 3567777777777763
No 198
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=21.95 E-value=1.4e+02 Score=21.00 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCHHHHH
Q 016794 299 TLKRIASKHGVSIPVVA 315 (382)
Q Consensus 299 ~l~~ia~~~g~s~aqla 315 (382)
.+++||+++|++..++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 78999999999998864
No 199
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=21.85 E-value=7.4e+02 Score=24.01 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEe
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFH 166 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH 166 (382)
.+.+.+++.++..+ +|+.+++.+|.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 46677777666544 4777887777665
No 200
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=21.77 E-value=2.6e+02 Score=27.00 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHcCCC--HHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHhhhhcCCCCHH-HHHHHHHHHhcCCC
Q 016794 292 QFQVLLQTLKRIASKHGVS--IPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDED-DVNSIQEVTKKGKD 368 (382)
Q Consensus 292 ~~~~~~~~l~~ia~~~g~s--~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~~~~~~~L~~e-~~~~l~~~~~~~~~ 368 (382)
.+..+...+..++++|+.. +++.+..|.+..+.-..-+.+..+ .....+.|++ +.+.|+++.+..+.
T Consensus 213 ~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~----------~~~~yp~t~~GQ~~~l~~l~~~v~~ 282 (332)
T PF07745_consen 213 TLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATS----------LISGYPATPQGQADFLRDLINAVKN 282 (332)
T ss_dssp -HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSST----------GGTTS-SSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCcccc----------ccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3566678888899988863 455566666555443322222211 2234567766 55557777765555
Q ss_pred CC--CCcCCccc
Q 016794 369 LL--GVIGDCGD 378 (382)
Q Consensus 369 ~~--~~~~~~~~ 378 (382)
.+ ...|-||+
T Consensus 283 ~p~~~g~GvfYW 294 (332)
T PF07745_consen 283 VPNGGGLGVFYW 294 (332)
T ss_dssp S--TTEEEEEEE
T ss_pred hccCCeEEEEee
Confidence 43 25555554
No 201
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=21.70 E-value=1.7e+02 Score=24.05 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHc
Q 016794 145 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 188 (382)
Q Consensus 145 ~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 188 (382)
|..+.+.|+.+....+|.++++..+.-.-...+....++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 44555555556666788888888776544355666666666665
No 202
>PRK10508 hypothetical protein; Provisional
Probab=21.55 E-value=1.5e+02 Score=28.61 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHH
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE 187 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~ 187 (382)
.+|+.+.+.+++-.+++|+|.+ +++.+.. +.++.++.++-|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~~---~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQIF---DHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCCC---CHHHHHHHHHHHHH
Confidence 4899999999999999998877 3443332 24555555554443
No 203
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.54 E-value=3.7e+02 Score=25.80 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=56.4
Q ss_pred cceEEEecCCCCCCcHHHHHHHHHHHHHcCCc-cEEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHH
Q 016794 160 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 237 (382)
Q Consensus 160 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gki-r~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~ 237 (382)
.++.++-.|-+ .+-++.+.++++.-.+ -+.|=|-++.+.+..+++.+ -++++|+..+..-. ..-..+...|+
T Consensus 203 ~~i~~iEeP~~-----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~~~ik~~~~GGit~~~~i~~~A~ 276 (354)
T cd03317 203 YGLLMIEQPLA-----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELG-ACKIINIKPGRVGGLTEALKIHDLCQ 276 (354)
T ss_pred CCccEEECCCC-----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC-CCCEEEecccccCCHHHHHHHHHHHH
Confidence 46667766643 2236667777765433 25677778999999998765 36777777554311 12357899999
Q ss_pred HhCCcEEEcccccc
Q 016794 238 LTGVKLITYGTVMG 251 (382)
Q Consensus 238 ~~gi~via~spl~~ 251 (382)
.+|+.++..+....
T Consensus 277 ~~gi~~~~g~~~es 290 (354)
T cd03317 277 EHGIPVWCGGMLES 290 (354)
T ss_pred HcCCcEEecCcccc
Confidence 99999976554433
No 204
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=21.42 E-value=1.2e+02 Score=28.70 Aligned_cols=48 Identities=15% Similarity=-0.033 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCCCCc--ceEEEecCCCCCCcHHHHHHHHHHHHHcCCccE
Q 016794 142 SIVRESIDVSRRRMDVPCL--DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT 193 (382)
Q Consensus 142 ~~i~~~~e~SL~~Lg~d~i--Dl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~ 193 (382)
+...+.+.+.+++||+.+- ..+.-+.+. -.+.+++.+.+|.++|.|-.
T Consensus 82 ~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~----~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 82 EEMSGEHKEDFRRLGISYDWSDEYITTEPE----YSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHhCccccCCCCeECCCHH----HHHHHHHHHHHHHHCCCEEe
Confidence 5678889999999998632 233333331 25779999999999999854
No 205
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=21.39 E-value=2.3e+02 Score=28.25 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEE-ecCCC----------CCCcHH---HHHHH-HHHHHHcCCccEEeccCCcH
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDY----------SNPGYL---DALNH-LTDLKEEGKIKTVALTNFDT 201 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~l-H~p~~----------~~~~~~---e~~~a-L~~l~~~Gkir~iGvSn~~~ 201 (382)
..+.+.+.+.++..++ |+.|+|.+|.+ |-|.. ..|+.+ +.++. .+.|.+.|. +.||+|||..
T Consensus 200 ~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 3577778888877664 78999999977 44421 122223 23333 345667777 9999999976
No 206
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=21.34 E-value=5.4e+02 Score=22.21 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHHHhh
Q 016794 75 DINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 154 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL~~ 154 (382)
+.+++.++++.+++.|++.|--...-.+..+.+.+.-+..+ ++.+ ..++ -.+.+.+...++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-----~~~i--Gag~-------v~~~~~~~~a~~----- 74 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP-----EALI--GAGT-------VLTPEQADAAIA----- 74 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-----CCEE--EEEe-------CCCHHHHHHHHH-----
Confidence 67889999999999999999866554444444443322221 1111 1112 134565655443
Q ss_pred cCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeecc
Q 016794 155 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQV 219 (382)
Q Consensus 155 Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~ 219 (382)
+|.|++ |.|... .+. .+..++.|.---+|++ +.+++.++.+.| .+++++
T Consensus 75 ~Ga~~i-----~~p~~~----~~~---~~~~~~~~~~~i~gv~--t~~e~~~A~~~G--ad~i~~ 123 (190)
T cd00452 75 AGAQFI-----VSPGLD----PEV---VKAANRAGIPLLPGVA--TPTEIMQALELG--ADIVKL 123 (190)
T ss_pred cCCCEE-----EcCCCC----HHH---HHHHHHcCCcEECCcC--CHHHHHHHHHCC--CCEEEE
Confidence 676644 766432 233 3334445665568999 667888888766 444554
No 207
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.32 E-value=5.9e+02 Score=24.67 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=56.4
Q ss_pred EEEecCCCC----------CCcHHHHHHHHHHHHHcCC----ccEEecc--CCcHHHHHHHHH--cCCCeeeeccccccc
Q 016794 163 LQFHWWDYS----------NPGYLDALNHLTDLKEEGK----IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVV 224 (382)
Q Consensus 163 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~Gk----ir~iGvS--n~~~~~l~~~~~--~~~~~~~~q~~~n~~ 224 (382)
+-||.|+.. ...++++++++.+..++-+ ++|+=+. |.+.++++++.+ .+.+..++-++||.-
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 567888642 1237889999997775422 2244343 456677776665 244577888889873
Q ss_pred cCC---hh----hhHHHHHHHhCCcEEEcccccc
Q 016794 225 DMR---PQ----QKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 225 ~~~---~~----~~~l~~~~~~gi~via~spl~~ 251 (382)
... +. ....+.++++||.+......+.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 211 11 2567778888999988776654
No 208
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=21.31 E-value=4.5e+02 Score=24.68 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcC----CccEEeccCCcHHHHHHHHHc--CC
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----KIKTVALTNFDTERLRIILEN--GI 212 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G----kir~iGvSn~~~~~l~~~~~~--~~ 212 (382)
++.+ -+-.+-+.|..+|+++|.+-+ |... ++-.+++..+.+.| .+++.+++-.....++.+++. +.
T Consensus 20 ~s~~-~Ki~ia~~L~~~Gv~~IE~gf---P~~~----~~e~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~ 91 (284)
T cd07942 20 MSVE-QKLRFFKLLVKIGFKEIEVGF---PSAS----QTDFDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGA 91 (284)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCC
Confidence 4443 344566669999999998862 4322 22345566665554 467888887777778888875 33
Q ss_pred Ceeeecc---------ccccccCChh------hhHHHHHHHhCCc
Q 016794 213 PVVSNQV---------QHSVVDMRPQ------QKMAELCQLTGVK 242 (382)
Q Consensus 213 ~~~~~q~---------~~n~~~~~~~------~~~l~~~~~~gi~ 242 (382)
....+.+ ..|+ ++..+ .+.+++++++|+.
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~~-~~s~~e~~~~~~~~v~~a~~~g~~ 135 (284)
T cd07942 92 KKAIVHLYNATSPLQRRVVF-GKSKEEIIEIAVDGAKLVKELAAK 135 (284)
T ss_pred CCCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhccc
Confidence 2111211 2222 12222 3678899999875
No 209
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=21.25 E-value=3.2e+02 Score=23.27 Aligned_cols=74 Identities=9% Similarity=-0.057 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcChHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHHHhh
Q 016794 75 DINNAVNAMLHYVDAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 154 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~Gi~~fDTA~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~SL~~ 154 (382)
+++...-++++|-+.||.+|=.|..||..-..+-+.++. + ..-+.++...+-. .-+...+.+.+++-|+.
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg-------~-lkvVvVthh~Gf~--e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-------D-LKVVVVTHHAGFE--EKGTQEMDEEVRKELKE 81 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-------C-ceEEEEEeecccc--cCCceecCHHHHHHHHH
Q ss_pred cCCC
Q 016794 155 MDVP 158 (382)
Q Consensus 155 Lg~d 158 (382)
.|.+
T Consensus 82 rGa~ 85 (186)
T COG1751 82 RGAK 85 (186)
T ss_pred cCce
No 210
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=21.22 E-value=5.3e+02 Score=22.08 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcC
Q 016794 140 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 189 (382)
Q Consensus 140 ~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G 189 (382)
+++.+.+ ..++++.- =+++++|..+......+..-..+..|+++|
T Consensus 137 ~~~~i~~---~~~~~~~~--g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~G 181 (191)
T TIGR02764 137 GVESIVD---RVVKNTKP--GDIILLHASDSAKQTVKALPTIIKKLKEKG 181 (191)
T ss_pred CHHHHHH---HHHhcCCC--CCEEEEeCCCCcHhHHHHHHHHHHHHHHCC
Confidence 4444443 33444432 379999964322121233334455566666
No 211
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=21.12 E-value=6.8e+02 Score=23.34 Aligned_cols=153 Identities=12% Similarity=0.134 Sum_probs=83.5
Q ss_pred ChHHHHHHHHHHHHcC-CcEEeC-------C---CCcChHHHHHHHHHhhhhhcCCccceeeEeeecccCCCCCCCCHHH
Q 016794 75 DINNAVNAMLHYVDAG-LTTFDM-------A---DIYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSI 143 (382)
Q Consensus 75 ~~~~~~~~l~~A~~~G-i~~fDT-------A---~~YG~sE~~lG~al~~~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~ 143 (382)
+.++..+..+.+.+.| +..||- + ..|+...+.+-+.++..+..- .+-+ .-|..+. .+.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv----~vKl~~~-----~~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPV----IVKLTPN-----VTD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCE----EEEcCCC-----chh
Confidence 5677778888888898 899975 2 233444556666666544321 1222 3333332 122
Q ss_pred HHHHHHHHHhhcCCCCcceEE-EecC--CCC--------------CCc-HHHHHHHHHHHHHcCCccEEeccCC-cHHHH
Q 016794 144 VRESIDVSRRRMDVPCLDMLQ-FHWW--DYS--------------NPG-YLDALNHLTDLKEEGKIKTVALTNF-DTERL 204 (382)
Q Consensus 144 i~~~~e~SL~~Lg~d~iDl~~-lH~p--~~~--------------~~~-~~e~~~aL~~l~~~Gkir~iGvSn~-~~~~l 204 (382)
+. .+-+.|+..|.|.|++.= ++.. +.. .+. ..-.++.+.++++.=++--||+.+. +.+.+
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 22 233456778887776531 1111 000 000 0114566667777656889999886 78899
Q ss_pred HHHHHcCCCeeeeccccccc-cCC----hhhhHHHHHHHhCC
Q 016794 205 RIILENGIPVVSNQVQHSVV-DMR----PQQKMAELCQLTGV 241 (382)
Q Consensus 205 ~~~~~~~~~~~~~q~~~n~~-~~~----~~~~~l~~~~~~gi 241 (382)
.+++..| .+.+|+-=-++ ++. ..+++-.++.++|.
T Consensus 250 ~~~l~aG--Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 250 IEFIMAG--ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHcC--CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 9988877 46666542222 111 12456666666664
No 212
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=20.95 E-value=7.1e+02 Score=23.46 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=88.3
Q ss_pred ccccccccCCCCC--CCChHHHHHHHHHHH-HcCCcEEeCCCCcCh-----HHHHHHHHHhhhhhcCCccceeeEeeecc
Q 016794 60 VVNGMWQTSGGWG--KIDINNAVNAMLHYV-DAGLTTFDMADIYGP-----AEDLYGIFINRVRRERPPEFLDKVRGLTK 131 (382)
Q Consensus 60 lglGt~~~~~~~~--~~~~~~~~~~l~~A~-~~Gi~~fDTA~~YG~-----sE~~lG~al~~~~~~~~~~~~~~~~~~tk 131 (382)
|.||.|.-+ .+. ..+.++..+.+...+ ..|.+.+|--..|+. +-..+-++|+.+..+.+ .+.++..+..
T Consensus 72 iS~GG~~g~-~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p-~l~vs~Tlp~- 148 (294)
T cd06543 72 VSFGGASGT-PLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYP-DLKISFTLPV- 148 (294)
T ss_pred EEecCCCCC-ccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCC-CcEEEEecCC-
Confidence 567766532 121 124444444554444 469999986555543 12345677877765544 4444433321
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCC-----CCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHH
Q 016794 132 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-----NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRI 206 (382)
Q Consensus 132 ~~~~~~~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~-----~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~ 206 (382)
.| ..++++.+ .+-++.+..|+. +|.+-+-..|.. ...-+.+..+.+.++.+=+--|=+ ++..++-.
T Consensus 149 -~p--~gl~~~g~--~~l~~a~~~Gv~-~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~ 219 (294)
T cd06543 149 -LP--TGLTPDGL--NVLEAAAANGVD-LDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWA 219 (294)
T ss_pred -CC--CCCChhHH--HHHHHHHHcCCC-cceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHH
Confidence 12 23444432 234444555642 444444333322 121344556666555543322222 33333333
Q ss_pred HHHcCCCeeeeccccc--cccCChhhhHHHHHHHhCCcEEEccccccc
Q 016794 207 ILENGIPVVSNQVQHS--VVDMRPQQKMAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 207 ~~~~~~~~~~~q~~~n--~~~~~~~~~~l~~~~~~gi~via~spl~~G 252 (382)
.+ |+.|.+=+.... .|....-..++++++++||+.++|..+.+.
T Consensus 220 ~i--g~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 220 MI--GVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred Hc--cccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 22 333332222211 222233468999999999999999888654
No 213
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=20.90 E-value=7.6e+02 Score=23.78 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcC-CccEEecc-----------CC-cHHHH
Q 016794 138 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALT-----------NF-DTERL 204 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-kir~iGvS-----------n~-~~~~l 204 (382)
.++++.|.+.++.. +..|...+.+.--+.|+ .+ .+...+.+..++++. .+.-..++ .. +.+.+
T Consensus 78 ~l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~--~~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l 153 (351)
T TIGR03700 78 AMSLEEIVARVKEA-YAPGATEVHIVGGLHPN--LP-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVL 153 (351)
T ss_pred CCCHHHHHHHHHHH-HHCCCcEEEEecCCCCC--CC-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHH
Confidence 46889999888754 56898888887655554 22 677778888888875 24333221 22 23457
Q ss_pred HHHHHcCCCee---eeccc----cccccC---Chhh--hHHHHHHHhCCcEEEccccccc
Q 016794 205 RIILENGIPVV---SNQVQ----HSVVDM---RPQQ--KMAELCQLTGVKLITYGTVMGG 252 (382)
Q Consensus 205 ~~~~~~~~~~~---~~q~~----~n~~~~---~~~~--~~l~~~~~~gi~via~spl~~G 252 (382)
+++.+.|..-. ..+.- +.-+.. ..++ +.+..+++.||.+-+.--++-|
T Consensus 154 ~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Glg 213 (351)
T TIGR03700 154 DELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHI 213 (351)
T ss_pred HHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCC
Confidence 77777663211 11110 111111 1222 6899999999998765555443
No 214
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.84 E-value=4.5e+02 Score=23.92 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=17.7
Q ss_pred hhHHHHHHHhCCcEEEcccccc
Q 016794 230 QKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 230 ~~~l~~~~~~gi~via~spl~~ 251 (382)
..+.+.++++||.+.++.|...
T Consensus 50 ~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 50 KQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred HHHHHHHHHcCCeEEEecCccc
Confidence 5688889999999988877544
No 215
>PTZ00445 p36-lilke protein; Provisional
Probab=20.80 E-value=4.4e+02 Score=23.78 Aligned_cols=89 Identities=9% Similarity=0.014 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHcCCcEE-----eCCCC-cC------hHHHHHHHHHhhhhhcCCccceeeEe-eecccCCCCCCCCHH
Q 016794 76 INNAVNAMLHYVDAGLTTF-----DMADI-YG------PAEDLYGIFINRVRRERPPEFLDKVR-GLTKWVPPPVKMTSS 142 (382)
Q Consensus 76 ~~~~~~~l~~A~~~Gi~~f-----DTA~~-YG------~sE~~lG~al~~~~~~~~~~~~~~~~-~~tk~~~~~~~~~~~ 142 (382)
..+....+....+.||.++ |-... +. ..++++-.+|+...-+ .-+.++. ...++|..+.++.+.
T Consensus 77 tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~---~~i~~~~~yyp~~w~~p~~y~~~ 153 (219)
T PTZ00445 77 TPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCD---FKIKKVYAYYPKFWQEPSDYRPL 153 (219)
T ss_pred CHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCcc---ceeeeeeeeCCcccCChhhhhhh
Confidence 4567777777889999865 22210 11 1456677777754332 2222333 344555443233332
Q ss_pred H------HHH--HHHHHHhhcCCCCcceEEEec
Q 016794 143 I------VRE--SIDVSRRRMDVPCLDMLQFHW 167 (382)
Q Consensus 143 ~------i~~--~~e~SL~~Lg~d~iDl~~lH~ 167 (382)
. -.+ .++..+++.|++.=+++++..
T Consensus 154 gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD 186 (219)
T PTZ00445 154 GLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDD 186 (219)
T ss_pred cccCCCccchHHHHHHHHHHcCCCHHHeEeecC
Confidence 2 232 349999999999888888753
No 216
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=20.65 E-value=4.4e+02 Score=23.03 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhcCCCCcceEEEecCCC-CCCcHHHHHHHHHHHHHcCCccEEeccCCcH--HHHHHHHHcCCCeeeecc
Q 016794 143 IVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQV 219 (382)
Q Consensus 143 ~i~~~~e~SL~~Lg~d~iDl~~lH~p~~-~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~--~~l~~~~~~~~~~~~~q~ 219 (382)
.+...+...++..+... +-+.+--.+. ...........+..|++.|- .+.+.+|+. ..+..+.. .+++.+-+
T Consensus 100 ~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~--l~~d~iKl 174 (241)
T smart00052 100 DLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR--LPVDLLKI 174 (241)
T ss_pred hHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh--CCCCeEEE
Confidence 35566677777776552 2333332221 11213445589999999996 466666643 33444433 34665555
Q ss_pred ccccccC--------ChhhhHHHHHHHhCCcEEEc
Q 016794 220 QHSVVDM--------RPQQKMAELCQLTGVKLITY 246 (382)
Q Consensus 220 ~~n~~~~--------~~~~~~l~~~~~~gi~via~ 246 (382)
..+++.. ..-+.++..|+..|+.+++-
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 5443321 11246789999999999873
No 217
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=20.62 E-value=3.1e+02 Score=25.52 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeeeeccccccccCChhhhHHHHHHHh--CCcEEE
Q 016794 179 LNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLT--GVKLIT 245 (382)
Q Consensus 179 ~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~--gi~via 245 (382)
.++++++++...-+.|||+.++.+++.++.+.| .+++++. |+ .+..-.+++..+++. .+.+++
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~g--aD~I~ld-~~-~p~~l~~~~~~~~~~~~~i~i~A 235 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAG--ADILQLD-KF-SPEELAELVPKLRSLAPPVLLAA 235 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcC--CCEEEEC-CC-CHHHHHHHHHHHhccCCCceEEE
Confidence 455666665433346999999999999888765 4555554 22 122223455555443 355554
No 218
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.53 E-value=2.5e+02 Score=26.09 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcceEEEecCC--CCCCcHHHHHHHHHHHHHcCCccEEeccCCcHHHHHHHHHcCCCeee
Q 016794 139 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 216 (382)
Q Consensus 139 ~~~~~i~~~~e~SL~~Lg~d~iDl~~lH~p~--~~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~ 216 (382)
++.+ -+..+-+.|.++|+++|++=..-.|. +...+.++....+.. ...++..++. -+...++.+++.+.+..-
T Consensus 17 ~s~e-~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g~~~i~ 91 (274)
T cd07938 17 IPTE-DKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAGVDEVA 91 (274)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcCcCEEE
Confidence 4544 44556666999999999986332232 111224444444443 2347777776 467788999887643211
Q ss_pred ecc-------ccccccCCh------hhhHHHHHHHhCCcEEE
Q 016794 217 NQV-------QHSVVDMRP------QQKMAELCQLTGVKLIT 245 (382)
Q Consensus 217 ~q~-------~~n~~~~~~------~~~~l~~~~~~gi~via 245 (382)
+-+ ..|+- ... -.+.+++++++|+.+..
T Consensus 92 i~~~~Sd~~~~~~~~-~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 92 VFVSASETFSQKNIN-CSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred EEEecCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 111 22221 111 13578899999998864
No 219
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=20.51 E-value=4.5e+02 Score=24.72 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCceeEeeCCCCCcHhHHHHHh
Q 016794 298 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 344 (382)
Q Consensus 298 ~~l~~ia~~~g~------s~aqlaL~w~l~~~~v~~~i~G~~s~~~~~l~en~ 344 (382)
..|.++|+++|. ++.++-..|.-.... ..+..|+|+ |+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGAST--P~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGAST--PDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCC--CHHHHHHH
Confidence 678889988874 689999999987655 567799999 98876543
No 220
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=20.38 E-value=4.3e+02 Score=24.51 Aligned_cols=54 Identities=15% Similarity=0.016 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHhhc------CCCCcceEEEecCCCCCCcHHHHHHHHHHHHHcCCc
Q 016794 138 KMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 191 (382)
Q Consensus 138 ~~~~~~i~~~~e~SL~~L------g~d~iDl~~lH~p~~~~~~~~e~~~aL~~l~~~Gki 191 (382)
..+.+.-.+-.+-+.+-+ +++.|=|=.+..+..--|+..|+++|-+.|+++|-+
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 556666555555555555 577776666666666667788999999999999954
No 221
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.33 E-value=8.6e+02 Score=24.21 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=34.4
Q ss_pred ccEEeccCCcHHHHHHHHHcCCCeeeeccccccccC-ChhhhHHHHHHHhCCcEEEcccccc
Q 016794 191 IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMG 251 (382)
Q Consensus 191 ir~iGvSn~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~l~~~~~~gi~via~spl~~ 251 (382)
++-+-+...+.+.+++++....+..++..+.|+.-. ..-.++.+.|+++|+.++.=..++.
T Consensus 129 v~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~ 190 (431)
T PRK08248 129 ITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFAS 190 (431)
T ss_pred EEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCc
Confidence 333333334667777766544445555555555211 2235778888888888776555543
No 222
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=20.33 E-value=8e+02 Score=23.83 Aligned_cols=24 Identities=8% Similarity=0.284 Sum_probs=15.0
Q ss_pred CCChHHHHHHHH-------HHHHcCCcEEeC
Q 016794 73 KIDINNAVNAML-------HYVDAGLTTFDM 96 (382)
Q Consensus 73 ~~~~~~~~~~l~-------~A~~~Gi~~fDT 96 (382)
.++.++..++++ .|.++|..-+.-
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEI 178 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREAGFDLVEL 178 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 355665555554 456789987763
No 223
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.32 E-value=2.3e+02 Score=22.52 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHhCCcEEE
Q 016794 228 PQQKMAELCQLTGVKLIT 245 (382)
Q Consensus 228 ~~~~~l~~~~~~gi~via 245 (382)
.+++++++|+++|+.++.
T Consensus 90 ~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 90 ESEELIEAAREAGIRVIG 107 (116)
T ss_dssp --HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHcCCEEEe
Confidence 345889999999999885
No 224
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=20.18 E-value=6.9e+02 Score=23.06 Aligned_cols=155 Identities=11% Similarity=0.102 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCcEEeCCCCcCh--HHHH--HHHHHhh-hhhcCCccceeeEeeecccCCCCCCCCHHHHHHHHHHH
Q 016794 77 NNAVNAMLHYVDAGLTTFDMADIYGP--AEDL--YGIFINR-VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 151 (382)
Q Consensus 77 ~~~~~~l~~A~~~Gi~~fDTA~~YG~--sE~~--lG~al~~-~~~~~~~~~~~~~~~~tk~~~~~~~~~~~~i~~~~e~S 151 (382)
+...+.++.--+.|+.+|..++.-|. .+.- +++.|++ ...+ .+. .++.+ +.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~----~i~--Hlt~r------~~n~~~l~~~L~~~ 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIP----TVP--HLTCI------GATREEIREILREY 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCC----eeE--Eeeec------CCCHHHHHHHHHHH
Confidence 44455555555889999998877652 2221 3344442 1111 111 11111 34667777777754
Q ss_pred HhhcCCCCcceEEEecCCC------CCCcHHHHHHHHHHHHHcCCccEEeccCCcH---------HHHHHHH---HcCCC
Q 016794 152 RRRMDVPCLDMLQFHWWDY------SNPGYLDALNHLTDLKEEGKIKTVALTNFDT---------ERLRIIL---ENGIP 213 (382)
Q Consensus 152 L~~Lg~d~iDl~~lH~p~~------~~~~~~e~~~aL~~l~~~Gkir~iGvSn~~~---------~~l~~~~---~~~~~ 213 (382)
..+|++ +++.|-...+ ....+..+.+-++.+++..---.||+..+.. ++++.+. +.|..
T Consensus 83 -~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~ 159 (272)
T TIGR00676 83 -RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD 159 (272)
T ss_pred -HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 778854 2333432111 1111334555555555542234788776431 2344343 35777
Q ss_pred eeeeccccccccCChhhhHHHHHHHhCCcEEEcccccccc
Q 016794 214 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 253 (382)
Q Consensus 214 ~~~~q~~~n~~~~~~~~~~l~~~~~~gi~via~spl~~G~ 253 (382)
+.+-|.-|++ ..-..+++.|++.||.+ |+--|+
T Consensus 160 f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi 192 (272)
T TIGR00676 160 YAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGI 192 (272)
T ss_pred eEeeccccCH---HHHHHHHHHHHHcCCCC----CEeccc
Confidence 8888888885 33457889999998765 554554
Done!