Query 016797
Match_columns 382
No_of_seqs 426 out of 2121
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1734 Predicted RING-contain 99.9 1.1E-28 2.4E-33 225.0 1.2 198 23-282 67-284 (328)
2 KOG4628 Predicted E3 ubiquitin 99.6 8.7E-16 1.9E-20 148.4 10.7 76 209-284 205-283 (348)
3 COG5243 HRD1 HRD ubiquitin lig 99.6 1.8E-14 4E-19 137.4 12.0 71 209-279 265-345 (491)
4 PF13639 zf-RING_2: Ring finge 99.4 6.6E-14 1.4E-18 96.6 1.8 44 232-275 1-44 (44)
5 PF12678 zf-rbx1: RING-H2 zinc 99.1 6.3E-11 1.4E-15 90.7 3.8 45 231-275 19-73 (73)
6 PHA02929 N1R/p28-like protein; 99.1 7.3E-11 1.6E-15 109.6 4.5 68 212-279 151-227 (238)
7 COG5540 RING-finger-containing 99.1 7.2E-11 1.6E-15 110.4 3.5 50 231-280 323-373 (374)
8 KOG0317 Predicted E3 ubiquitin 99.1 8.1E-11 1.7E-15 110.0 3.2 54 227-283 235-288 (293)
9 PLN03208 E3 ubiquitin-protein 99.0 7.1E-10 1.5E-14 99.2 6.5 53 230-285 17-85 (193)
10 KOG0823 Predicted E3 ubiquitin 99.0 6.8E-10 1.5E-14 101.0 5.7 56 229-287 45-103 (230)
11 PF13920 zf-C3HC4_3: Zinc fing 98.9 7.1E-10 1.5E-14 78.5 3.3 46 231-279 2-48 (50)
12 PF15227 zf-C3HC4_4: zinc fing 98.8 1.5E-09 3.3E-14 73.9 2.5 38 234-274 1-42 (42)
13 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.6E-09 3.4E-14 72.7 2.5 38 234-274 1-39 (39)
14 KOG0802 E3 ubiquitin ligase [P 98.8 5.8E-09 1.3E-13 109.1 5.6 52 229-280 289-342 (543)
15 cd00162 RING RING-finger (Real 98.7 9.6E-09 2.1E-13 69.8 3.4 44 233-278 1-45 (45)
16 KOG0320 Predicted E3 ubiquitin 98.7 6.5E-09 1.4E-13 90.8 2.7 52 229-281 129-180 (187)
17 smart00504 Ubox Modified RING 98.7 1.8E-08 3.8E-13 74.5 3.7 46 232-280 2-47 (63)
18 PF14634 zf-RING_5: zinc-RING 98.7 1.8E-08 3.9E-13 69.4 3.0 44 233-276 1-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 98.6 2.3E-08 4.9E-13 67.6 2.6 38 234-274 1-41 (41)
20 PF12861 zf-Apc11: Anaphase-pr 98.6 2.7E-08 5.9E-13 77.3 3.2 49 231-279 21-82 (85)
21 PHA02926 zinc finger-like prot 98.6 2.7E-08 5.9E-13 90.1 3.0 50 230-279 169-230 (242)
22 smart00184 RING Ring finger. E 98.5 5.2E-08 1.1E-12 63.8 2.9 38 234-274 1-39 (39)
23 TIGR00599 rad18 DNA repair pro 98.5 7.1E-08 1.5E-12 96.0 3.8 49 230-281 25-73 (397)
24 COG5574 PEX10 RING-finger-cont 98.5 7.7E-08 1.7E-12 89.1 2.6 52 229-283 213-266 (271)
25 KOG0828 Predicted E3 ubiquitin 98.4 1.4E-06 3E-11 86.8 9.9 51 230-280 570-635 (636)
26 PF13445 zf-RING_UBOX: RING-ty 98.3 4E-07 8.7E-12 62.2 2.6 34 234-268 1-35 (43)
27 KOG0287 Postreplication repair 98.3 2.4E-07 5.3E-12 88.2 1.2 47 232-281 24-70 (442)
28 COG5194 APC11 Component of SCF 98.2 7.5E-07 1.6E-11 67.6 3.0 47 233-279 33-81 (88)
29 COG5432 RAD18 RING-finger-cont 98.2 5.9E-07 1.3E-11 84.0 2.2 45 232-279 26-70 (391)
30 PF04564 U-box: U-box domain; 98.2 8.7E-07 1.9E-11 67.8 2.7 48 231-281 4-52 (73)
31 KOG2164 Predicted E3 ubiquitin 98.2 7.3E-07 1.6E-11 89.6 2.5 50 231-283 186-240 (513)
32 KOG4265 Predicted E3 ubiquitin 98.1 2.3E-06 4.9E-11 82.8 3.1 50 230-282 289-339 (349)
33 TIGR00570 cdk7 CDK-activating 98.0 4.5E-06 9.8E-11 80.1 3.6 52 231-282 3-57 (309)
34 smart00744 RINGv The RING-vari 97.9 6.2E-06 1.3E-10 58.0 2.7 42 233-275 1-49 (49)
35 KOG1493 Anaphase-promoting com 97.9 1.8E-06 3.8E-11 65.0 -0.2 48 231-278 20-80 (84)
36 KOG2177 Predicted E3 ubiquitin 97.9 4.2E-06 9.1E-11 79.5 1.4 44 230-276 12-55 (386)
37 KOG0824 Predicted E3 ubiquitin 97.8 7.2E-06 1.6E-10 77.4 1.9 49 232-283 8-57 (324)
38 KOG4172 Predicted E3 ubiquitin 97.8 4.5E-06 9.9E-11 58.8 0.4 45 232-279 8-54 (62)
39 KOG1785 Tyrosine kinase negati 97.8 4.6E-05 1E-09 74.4 7.0 47 232-281 370-418 (563)
40 KOG2930 SCF ubiquitin ligase, 97.7 1.5E-05 3.3E-10 63.5 1.9 49 230-278 45-107 (114)
41 COG5219 Uncharacterized conser 97.7 1.1E-05 2.3E-10 85.9 0.7 50 230-279 1468-1523(1525)
42 PF11793 FANCL_C: FANCL C-term 97.7 9E-06 2E-10 61.7 -0.1 49 231-279 2-66 (70)
43 PF14835 zf-RING_6: zf-RING of 97.6 1.2E-05 2.7E-10 58.9 0.2 43 232-279 8-51 (65)
44 KOG0311 Predicted E3 ubiquitin 97.6 9.5E-06 2.1E-10 78.2 -1.0 52 231-285 43-96 (381)
45 KOG0827 Predicted E3 ubiquitin 97.5 3.7E-05 8.1E-10 74.8 1.7 47 232-278 5-55 (465)
46 KOG4159 Predicted E3 ubiquitin 97.4 9.8E-05 2.1E-09 73.9 3.0 49 229-280 82-130 (398)
47 KOG0804 Cytoplasmic Zn-finger 97.4 5.8E-05 1.3E-09 74.9 1.3 47 231-279 175-222 (493)
48 KOG0978 E3 ubiquitin ligase in 97.3 7E-05 1.5E-09 79.0 1.1 48 232-282 644-692 (698)
49 KOG4445 Uncharacterized conser 97.1 0.00014 3E-09 68.8 0.9 49 231-279 115-186 (368)
50 KOG1039 Predicted E3 ubiquitin 97.1 0.00022 4.8E-09 70.0 2.1 51 229-279 159-221 (344)
51 KOG0825 PHD Zn-finger protein 97.0 0.00013 2.9E-09 76.5 -0.3 49 232-280 124-172 (1134)
52 KOG1645 RING-finger-containing 97.0 0.00043 9.4E-09 68.1 3.1 48 231-278 4-55 (463)
53 KOG1571 Predicted E3 ubiquitin 97.0 0.00013 2.8E-09 70.9 -0.7 43 231-279 305-347 (355)
54 KOG4692 Predicted E3 ubiquitin 96.9 0.0012 2.5E-08 63.9 5.0 72 206-280 392-468 (489)
55 COG5152 Uncharacterized conser 96.7 0.00054 1.2E-08 61.2 0.7 44 232-278 197-240 (259)
56 KOG0297 TNF receptor-associate 96.7 0.00082 1.8E-08 67.7 2.0 53 229-284 19-72 (391)
57 KOG2660 Locus-specific chromos 96.6 0.00055 1.2E-08 65.8 0.2 49 232-282 16-64 (331)
58 KOG2879 Predicted E3 ubiquitin 96.6 0.002 4.4E-08 60.5 3.5 49 228-279 236-287 (298)
59 KOG4275 Predicted E3 ubiquitin 96.4 0.00093 2E-08 63.1 0.4 43 231-280 300-343 (350)
60 PF11789 zf-Nse: Zinc-finger o 96.4 0.002 4.4E-08 46.7 1.8 40 231-273 11-53 (57)
61 KOG3970 Predicted E3 ubiquitin 96.3 0.0048 1E-07 56.2 4.4 52 232-284 51-110 (299)
62 KOG1941 Acetylcholine receptor 96.3 0.0013 2.8E-08 64.4 0.7 46 231-276 365-413 (518)
63 KOG1813 Predicted E3 ubiquitin 96.1 0.0018 3.8E-08 61.4 0.7 45 232-279 242-286 (313)
64 KOG1428 Inhibitor of type V ad 96.0 0.0045 9.7E-08 69.0 2.8 51 230-280 3485-3545(3738)
65 KOG1002 Nucleotide excision re 95.8 0.0037 8.1E-08 63.4 1.5 48 230-280 535-587 (791)
66 COG5236 Uncharacterized conser 95.8 0.0076 1.6E-07 58.3 3.4 49 226-277 56-106 (493)
67 KOG1814 Predicted E3 ubiquitin 95.8 0.0071 1.5E-07 59.8 3.2 46 232-277 185-238 (445)
68 PF10367 Vps39_2: Vacuolar sor 95.5 0.0089 1.9E-07 48.5 2.1 33 229-262 76-108 (109)
69 KOG2114 Vacuolar assembly/sort 95.3 0.011 2.3E-07 63.4 2.7 62 212-278 821-882 (933)
70 PF05883 Baculo_RING: Baculovi 95.3 0.0085 1.8E-07 50.8 1.6 43 232-274 27-75 (134)
71 PF14570 zf-RING_4: RING/Ubox 95.2 0.016 3.4E-07 40.4 2.4 45 234-278 1-47 (48)
72 COG5222 Uncharacterized conser 95.0 0.015 3.3E-07 55.1 2.4 42 232-276 275-318 (427)
73 KOG0801 Predicted E3 ubiquitin 94.9 0.0095 2.1E-07 51.7 0.7 30 229-258 175-204 (205)
74 KOG4739 Uncharacterized protei 94.8 0.011 2.4E-07 54.8 0.9 44 233-279 5-48 (233)
75 PF12906 RINGv: RING-variant d 94.7 0.023 4.9E-07 39.5 2.2 40 234-274 1-47 (47)
76 KOG0826 Predicted E3 ubiquitin 94.5 0.023 4.9E-07 54.8 2.4 46 229-277 298-344 (357)
77 PHA02825 LAP/PHD finger-like p 94.2 0.045 9.8E-07 47.6 3.3 50 228-281 5-61 (162)
78 KOG4185 Predicted E3 ubiquitin 94.1 0.03 6.6E-07 54.1 2.4 47 232-278 4-54 (296)
79 PHA02862 5L protein; Provision 94.1 0.035 7.6E-07 47.4 2.4 46 232-281 3-55 (156)
80 KOG3268 Predicted E3 ubiquitin 93.8 0.034 7.4E-07 49.1 1.8 48 232-279 166-228 (234)
81 PF14447 Prok-RING_4: Prokaryo 93.8 0.034 7.5E-07 39.7 1.5 45 232-281 8-52 (55)
82 KOG3039 Uncharacterized conser 93.8 0.057 1.2E-06 50.1 3.3 50 232-281 222-272 (303)
83 KOG1952 Transcription factor N 93.6 0.058 1.3E-06 57.9 3.5 48 229-276 189-244 (950)
84 PHA03096 p28-like protein; Pro 92.8 0.055 1.2E-06 52.1 1.7 45 232-276 179-231 (284)
85 PF07800 DUF1644: Protein of u 92.6 0.11 2.3E-06 45.3 3.1 52 231-285 2-97 (162)
86 PF08746 zf-RING-like: RING-li 92.6 0.071 1.5E-06 36.3 1.5 41 234-274 1-43 (43)
87 PF10272 Tmpp129: Putative tra 92.5 0.24 5.2E-06 49.1 5.8 74 207-280 247-352 (358)
88 KOG1100 Predicted E3 ubiquitin 92.3 0.061 1.3E-06 49.5 1.3 40 233-279 160-200 (207)
89 KOG2932 E3 ubiquitin ligase in 91.6 0.073 1.6E-06 51.0 0.9 43 232-278 91-133 (389)
90 KOG4367 Predicted Zn-finger pr 91.6 0.32 7E-06 48.6 5.4 34 229-265 2-35 (699)
91 PF04641 Rtf2: Rtf2 RING-finge 91.4 0.24 5.1E-06 47.2 4.2 53 229-282 111-164 (260)
92 COG5175 MOT2 Transcriptional r 91.3 0.15 3.3E-06 49.4 2.7 52 229-280 12-65 (480)
93 KOG2817 Predicted E3 ubiquitin 91.1 0.16 3.5E-06 50.4 2.8 45 232-276 335-382 (394)
94 KOG1001 Helicase-like transcri 91.1 0.08 1.7E-06 56.9 0.8 47 232-282 455-503 (674)
95 KOG0827 Predicted E3 ubiquitin 91.0 0.018 4E-07 56.5 -3.8 51 232-282 197-248 (465)
96 KOG1940 Zn-finger protein [Gen 90.8 0.13 2.8E-06 49.1 1.8 45 232-276 159-204 (276)
97 KOG2034 Vacuolar sorting prote 87.8 0.24 5.2E-06 53.7 1.3 36 229-265 815-850 (911)
98 PF14446 Prok-RING_1: Prokaryo 87.5 0.65 1.4E-05 33.2 2.9 39 231-273 5-44 (54)
99 PF05290 Baculo_IE-1: Baculovi 86.6 0.85 1.8E-05 38.6 3.6 50 230-281 79-134 (140)
100 KOG3800 Predicted E3 ubiquitin 86.5 0.5 1.1E-05 45.1 2.5 47 233-279 2-51 (300)
101 KOG0298 DEAD box-containing he 86.4 0.2 4.4E-06 56.3 -0.2 43 232-276 1154-1196(1394)
102 KOG3002 Zn finger protein [Gen 83.0 0.8 1.7E-05 44.5 2.2 42 231-279 48-91 (299)
103 KOG0802 E3 ubiquitin ligase [P 82.0 0.75 1.6E-05 48.5 1.8 50 227-283 475-524 (543)
104 KOG4362 Transcriptional regula 81.4 0.38 8.3E-06 51.2 -0.6 45 232-279 22-69 (684)
105 KOG0309 Conserved WD40 repeat- 80.8 0.92 2E-05 48.5 1.9 27 247-273 1043-1069(1081)
106 KOG1812 Predicted E3 ubiquitin 80.8 1.2 2.6E-05 44.9 2.7 37 231-267 146-183 (384)
107 KOG3053 Uncharacterized conser 80.7 0.78 1.7E-05 43.0 1.2 49 230-278 19-81 (293)
108 PF03854 zf-P11: P-11 zinc fin 80.1 0.69 1.5E-05 32.0 0.5 34 248-281 14-48 (50)
109 COG5183 SSM4 Protein involved 79.1 1.5 3.3E-05 47.3 2.8 50 229-279 10-66 (1175)
110 KOG1609 Protein involved in mR 78.0 1.3 2.7E-05 42.9 1.8 50 230-279 77-134 (323)
111 KOG0269 WD40 repeat-containing 77.8 1.8 3.9E-05 46.5 2.9 39 232-273 780-820 (839)
112 KOG3161 Predicted E3 ubiquitin 76.2 1 2.2E-05 47.4 0.5 42 232-276 12-54 (861)
113 KOG3899 Uncharacterized conser 76.1 2.7 5.8E-05 40.3 3.3 28 252-279 325-365 (381)
114 COG5220 TFB3 Cdk activating ki 71.9 1.9 4.1E-05 40.1 1.2 46 231-276 10-61 (314)
115 PF04216 FdhE: Protein involve 70.9 2.3 5E-05 41.1 1.6 45 229-276 170-219 (290)
116 PF02891 zf-MIZ: MIZ/SP-RING z 67.5 5.7 0.00012 27.8 2.6 41 232-276 3-49 (50)
117 COG5109 Uncharacterized conser 66.4 4.3 9.3E-05 39.3 2.3 44 232-275 337-383 (396)
118 KOG3579 Predicted E3 ubiquitin 63.8 3.1 6.7E-05 39.7 0.9 33 232-267 269-305 (352)
119 KOG1829 Uncharacterized conser 63.3 2.5 5.5E-05 44.5 0.2 42 231-275 511-557 (580)
120 KOG1812 Predicted E3 ubiquitin 61.7 3.7 8.1E-05 41.4 1.1 43 232-274 307-351 (384)
121 KOG0824 Predicted E3 ubiquitin 61.7 12 0.00026 36.1 4.4 48 230-280 104-152 (324)
122 KOG1815 Predicted E3 ubiquitin 61.7 4.6 9.9E-05 41.5 1.8 37 229-267 68-104 (444)
123 KOG0825 PHD Zn-finger protein 60.7 4.9 0.00011 43.5 1.7 48 232-279 97-154 (1134)
124 KOG4718 Non-SMC (structural ma 60.7 4.6 9.9E-05 37.0 1.3 42 232-275 182-223 (235)
125 PF07975 C1_4: TFIIH C1-like d 60.0 6.8 0.00015 27.7 1.8 42 234-275 2-50 (51)
126 PLN02400 cellulose synthase 59.5 30 0.00065 39.3 7.6 55 232-286 37-96 (1085)
127 PF10571 UPF0547: Uncharacteri 57.4 5.6 0.00012 24.0 0.9 22 233-256 2-24 (26)
128 KOG2068 MOT2 transcription fac 57.0 13 0.00028 36.4 3.8 48 232-279 250-298 (327)
129 KOG2066 Vacuolar assembly/sort 56.2 4.6 9.9E-05 43.7 0.7 45 231-276 784-832 (846)
130 TIGR01562 FdhE formate dehydro 52.0 6.9 0.00015 38.2 1.1 62 214-276 167-232 (305)
131 smart00132 LIM Zinc-binding do 51.4 15 0.00033 23.1 2.4 37 233-278 1-37 (39)
132 PF14569 zf-UDP: Zinc-binding 51.2 19 0.00041 27.7 3.1 55 231-285 9-68 (80)
133 PF01363 FYVE: FYVE zinc finge 50.9 7.6 0.00017 28.7 1.0 34 231-264 9-43 (69)
134 PF12273 RCR: Chitin synthesis 50.8 14 0.0003 31.1 2.7 9 128-136 2-10 (130)
135 KOG3799 Rab3 effector RIM1 and 50.2 6.7 0.00014 33.3 0.6 15 226-240 60-74 (169)
136 KOG3039 Uncharacterized conser 50.2 9.9 0.00021 35.7 1.7 31 232-265 44-74 (303)
137 KOG2807 RNA polymerase II tran 50.2 22 0.00048 34.8 4.1 60 217-276 312-375 (378)
138 PLN02189 cellulose synthase 50.1 20 0.00042 40.5 4.3 54 232-285 35-93 (1040)
139 PF11669 WBP-1: WW domain-bind 48.0 22 0.00047 28.9 3.2 10 127-136 24-33 (102)
140 PF13901 DUF4206: Domain of un 47.9 12 0.00027 34.1 2.0 39 231-275 152-196 (202)
141 PF06906 DUF1272: Protein of u 47.9 29 0.00062 25.0 3.4 45 233-280 7-53 (57)
142 PF10856 DUF2678: Protein of u 46.0 77 0.0017 26.4 6.1 22 31-52 52-73 (118)
143 TIGR00622 ssl1 transcription f 44.6 29 0.00063 28.7 3.5 44 232-275 56-110 (112)
144 PF06703 SPC25: Microsomal sig 44.5 41 0.0009 29.3 4.8 47 4-50 20-69 (162)
145 PLN02638 cellulose synthase A 44.3 24 0.00053 39.9 3.9 54 232-285 18-76 (1079)
146 PLN02436 cellulose synthase A 43.7 28 0.00061 39.4 4.3 53 232-284 37-94 (1094)
147 PF06844 DUF1244: Protein of u 43.3 14 0.0003 27.5 1.2 12 255-266 11-22 (68)
148 KOG3005 GIY-YIG type nuclease 42.9 13 0.00028 35.4 1.3 46 232-277 183-241 (276)
149 PRK03564 formate dehydrogenase 42.7 15 0.00032 36.0 1.8 45 230-276 186-234 (309)
150 PF13719 zinc_ribbon_5: zinc-r 42.1 14 0.00031 24.0 1.1 14 233-246 4-17 (37)
151 PF04710 Pellino: Pellino; In 41.9 8.6 0.00019 38.5 0.0 27 248-277 305-337 (416)
152 PF07191 zinc-ribbons_6: zinc- 41.6 3.1 6.6E-05 31.4 -2.4 40 232-279 2-41 (70)
153 KOG3113 Uncharacterized conser 40.7 27 0.00059 32.9 3.1 50 231-282 111-161 (293)
154 PF08114 PMP1_2: ATPase proteo 39.9 29 0.00063 23.3 2.2 27 126-152 12-38 (43)
155 KOG4812 Golgi-associated prote 39.7 1.8E+02 0.0039 27.4 8.2 22 111-132 212-233 (262)
156 KOG3842 Adaptor protein Pellin 38.5 26 0.00055 34.2 2.6 51 231-281 341-416 (429)
157 cd00065 FYVE FYVE domain; Zinc 38.5 23 0.00049 24.9 1.8 33 232-264 3-36 (57)
158 KOG2113 Predicted RNA binding 37.4 28 0.00061 33.9 2.7 45 232-279 137-183 (394)
159 KOG2113 Predicted RNA binding 37.3 26 0.00056 34.1 2.4 42 232-278 344-386 (394)
160 smart00064 FYVE Protein presen 36.4 30 0.00064 25.3 2.2 35 231-265 10-45 (68)
161 PRK03776 phosphoglycerol trans 36.2 1.7E+02 0.0037 32.3 8.7 40 13-57 3-42 (762)
162 PF01102 Glycophorin_A: Glycop 35.2 40 0.00086 28.4 3.0 8 126-133 66-73 (122)
163 KOG2927 Membrane component of 33.7 35 0.00076 33.8 2.8 29 80-110 228-259 (372)
164 smart00249 PHD PHD zinc finger 33.5 25 0.00055 22.8 1.3 30 234-263 2-31 (47)
165 PF15345 TMEM51: Transmembrane 33.4 43 0.00093 31.2 3.1 30 123-152 57-86 (233)
166 PF05297 Herpes_LMP1: Herpesvi 33.2 14 0.00031 35.5 0.0 8 271-278 234-241 (381)
167 PF02318 FYVE_2: FYVE-type zin 32.7 29 0.00063 28.7 1.8 46 230-276 53-102 (118)
168 PF04710 Pellino: Pellino; In 31.0 16 0.00035 36.6 0.0 51 231-281 328-403 (416)
169 PF00412 LIM: LIM domain; Int 30.2 40 0.00086 23.5 2.0 39 234-281 1-39 (58)
170 KOG4185 Predicted E3 ubiquitin 29.2 10 0.00022 36.6 -1.8 46 232-277 208-265 (296)
171 PF00628 PHD: PHD-finger; Int 28.8 28 0.00061 23.8 0.9 43 233-275 1-49 (51)
172 COG3125 CyoD Heme/copper-type 28.3 3E+02 0.0065 22.8 6.9 47 10-59 21-68 (111)
173 TIGR02908 CoxD_Bacillus cytoch 28.1 1.3E+02 0.0028 24.8 4.7 48 9-59 28-76 (110)
174 PF13717 zinc_ribbon_4: zinc-r 27.4 33 0.00071 22.2 1.0 14 233-246 4-17 (36)
175 KOG2846 Predicted membrane pro 27.4 1.3E+02 0.0028 29.7 5.4 36 248-283 219-257 (328)
176 PF14311 DUF4379: Domain of un 27.1 36 0.00077 24.0 1.2 22 252-274 34-55 (55)
177 PLN02915 cellulose synthase A 27.0 71 0.0015 36.3 4.0 52 231-282 15-71 (1044)
178 PF05568 ASFV_J13L: African sw 25.9 1.1E+02 0.0023 26.6 4.0 41 112-153 14-57 (189)
179 PF10083 DUF2321: Uncharacteri 25.9 35 0.00076 29.8 1.2 47 235-284 8-55 (158)
180 TIGR03141 cytochro_ccmD heme e 25.1 97 0.0021 21.0 3.0 22 123-144 4-25 (45)
181 PRK11088 rrmA 23S rRNA methylt 24.7 44 0.00096 31.6 1.7 26 232-257 3-28 (272)
182 COG4647 AcxC Acetone carboxyla 23.1 44 0.00096 28.3 1.2 24 233-259 59-82 (165)
183 KOG2231 Predicted E3 ubiquitin 22.6 54 0.0012 35.4 2.1 44 233-279 2-52 (669)
184 PF05624 LSR: Lipolysis stimul 22.3 95 0.0021 21.4 2.4 21 123-143 2-22 (49)
185 PF06814 Lung_7-TM_R: Lung sev 22.1 1.9E+02 0.0041 27.7 5.6 60 9-68 49-108 (295)
186 PF15102 TMEM154: TMEM154 prot 22.0 65 0.0014 27.9 2.1 27 134-160 68-94 (146)
187 KOG4564 Adenylate cyclase-coup 21.9 63 0.0014 33.6 2.3 28 31-58 173-201 (473)
188 PF06365 CD34_antigen: CD34/Po 21.8 49 0.0011 30.3 1.4 50 104-154 79-130 (202)
189 PLN02195 cellulose synthase A 20.9 1.1E+02 0.0024 34.5 4.1 50 231-280 6-60 (977)
190 PRK10582 cytochrome o ubiquino 20.4 4.7E+02 0.01 21.5 6.7 48 9-59 18-66 (109)
191 COG4847 Uncharacterized protei 20.2 94 0.002 24.9 2.4 34 232-266 7-40 (103)
No 1
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-28 Score=224.97 Aligned_cols=198 Identities=23% Similarity=0.434 Sum_probs=165.4
Q ss_pred HHhhhcccccccCCCc----chhhHHHHHHHHHHHHHHHhhhcccccccCCchhhhhhhhhhhhhHHHHHHhhhhhhhee
Q 016797 23 IIVAINWKRYHLCTYP----LHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFL 98 (382)
Q Consensus 23 ~~~~~~w~~~~~c~~p----~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~l~~~~f~ 98 (382)
.+++++||+.|..+|. +++|.++.|+.+..... |+++. +++|.-
T Consensus 67 Qi~lv~WKkrh~RSy~~~tll~m~~iPlyf~~~~~w~---------------------------rfl~~----WlmF~~- 114 (328)
T KOG1734|consen 67 QIFLVVWKKRHKRSYDVCTLLIMLFIPLYFFLYMQWY---------------------------RFLFC----WLMFCG- 114 (328)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHhhhhhhhhHHHH---------------------------HHHHH----HHHHHH-
Confidence 3899999999999998 78888888877654443 33322 444443
Q ss_pred eeeeeeEeEEEeecCCcCCCCCCC----eehhhH---HHHHHHHHHHHHHHHhhhhhccccchhhhhhcCCcccchhhhh
Q 016797 99 WAWTIIGTLWFTSARDCLPEEGQK----WGFLIW---LLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLL 171 (382)
Q Consensus 99 ~~w~i~g~~w~~~~~~~l~~~~~~----w~~ii~---l~~~~~~~i~i~~~~~~~~~~rr~~~~~~~~~~l~~~~~~~~~ 171 (382)
++.++|++++++++.+++|| ||++++ +++|++|++.+++..++..+.+.......++.|+.+++||++
T Consensus 115 ----~tafi~~ka~rkp~~g~tpRlVYkwFl~lyklSy~~g~vGyl~im~~~~g~n~~F~~~~~~~md~gi~~lfyglY- 189 (328)
T KOG1734|consen 115 ----FTAFITLKALRKPISGDTPRLVYKWFLFLYKLSYLLGVVGYLAIMFAQFGLNFTFFYLKTTYMDFGISFLFYGLY- 189 (328)
T ss_pred ----HHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeEEeecchhHhhhhHHHHHHHHH-
Confidence 66778899999999999998 776666 667888999999999999999999999999999999999984
Q ss_pred hcccchhhHHHhhhhhhhcCCccccccCCCCCCCHHHHHHHHHHHHhcCccccccCCCCccccccccccccCCC------
Q 016797 172 DMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGN------ 245 (382)
Q Consensus 172 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~------ 245 (382)
++..|||...+++|.++...|.|.+ +.+|+...++ +.|+||-..+....
T Consensus 190 ---------yGvlgRdfa~icsd~mAs~iGfYs~-----------~glPtkhl~d-----~vCaVCg~~~~~s~~eegvi 244 (328)
T KOG1734|consen 190 ---------YGVLGRDFAEICSDYMASTIGFYSP-----------SGLPTKHLSD-----SVCAVCGQQIDVSVDEEGVI 244 (328)
T ss_pred ---------HHhhhhHHHHHHHHHHHHHhcccCC-----------CCCCCCCCCc-----chhHhhcchheeecchhhhh
Confidence 5577999999999999999999986 7888776554 89999999886554
Q ss_pred -ceeeeCCCCccChhhHHHH--HhcCCCCcccCccCCCCC
Q 016797 246 -EVRGLPCAHNFHIECIDEW--LRLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 246 -~~~~lpC~H~Fh~~Ci~~w--l~~~~~CP~CR~~i~~~~ 282 (382)
+..+|.|+|+||+.||+.| +.++++||.|++++..++
T Consensus 245 enty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 245 ENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred hhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 6789999999999999999 568889999999886443
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.7e-16 Score=148.37 Aligned_cols=76 Identities=32% Similarity=0.792 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCccccccCCCCc--cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCC-CcccCccCCCCCcc
Q 016797 209 REAVEALIQELPKFRLKAVPTDC--SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVK-CPRCRCSVFPNLDL 284 (382)
Q Consensus 209 ~~~~~~~~~~lp~~~~~~~~~~~--~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~-CP~CR~~i~~~~~~ 284 (382)
+...++.++++|..++....+++ ..|+||+|+|+.||+.+.|||+|.||..||++||.++.+ ||+||.++......
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 34556677888988887755432 489999999999999999999999999999999987755 99999988766544
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.8e-14 Score=137.41 Aligned_cols=71 Identities=32% Similarity=0.752 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCccccccCCCCcccccccccc-ccCC---------CceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797 209 REAVEALIQELPKFRLKAVPTDCSECPICLEE-FHVG---------NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278 (382)
Q Consensus 209 ~~~~~~~~~~lp~~~~~~~~~~~~~C~IC~~~-~~~~---------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i 278 (382)
+.+.+.+.+.+|..+.++...++..|.||+++ ++.+ ..|++|||||.+|.+|++.|++++++||+||.++
T Consensus 265 ~r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 265 RRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred HHHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 44556666778888888888888999999999 4443 2479999999999999999999999999999985
Q ss_pred C
Q 016797 279 F 279 (382)
Q Consensus 279 ~ 279 (382)
.
T Consensus 345 i 345 (491)
T COG5243 345 I 345 (491)
T ss_pred c
Confidence 4
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.41 E-value=6.6e-14 Score=96.58 Aligned_cols=44 Identities=61% Similarity=1.323 Sum_probs=40.5
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 275 (382)
++|+||++.+..++.++.++|||.||.+|+.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999889999999999999999999999999999997
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.10 E-value=6.3e-11 Score=90.75 Aligned_cols=45 Identities=40% Similarity=0.916 Sum_probs=35.9
Q ss_pred ccccccccccccCC----------CceeeeCCCCccChhhHHHHHhcCCCCcccC
Q 016797 231 CSECPICLEEFHVG----------NEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275 (382)
Q Consensus 231 ~~~C~IC~~~~~~~----------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 275 (382)
++.|+||++.+... -.+...+|||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 35699999999322 1245567999999999999999999999998
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.09 E-value=7.3e-11 Score=109.64 Aligned_cols=68 Identities=28% Similarity=0.567 Sum_probs=50.3
Q ss_pred HHHHHHhcCccccccC----CCCccccccccccccCCCc-----eeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 212 VEALIQELPKFRLKAV----PTDCSECPICLEEFHVGNE-----VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 212 ~~~~~~~lp~~~~~~~----~~~~~~C~IC~~~~~~~~~-----~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
.++.++.+|....+.. ...+.+|+||++.+..++. ...++|+|.||..||.+|++.+.+||+||..+.
T Consensus 151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 4556677776653321 1345799999999764321 245579999999999999999999999998764
No 7
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.2e-11 Score=110.45 Aligned_cols=50 Identities=44% Similarity=1.097 Sum_probs=45.8
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~ 280 (382)
.-+|+||++++..++..+.|||.|.||..|+++|+. .+..||+||.++++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 358999999999999999999999999999999987 67789999998875
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=8.1e-11 Score=109.97 Aligned_cols=54 Identities=33% Similarity=0.773 Sum_probs=47.7
Q ss_pred CCCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCCc
Q 016797 227 VPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLD 283 (382)
Q Consensus 227 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~ 283 (382)
..+....|.+|++..+ ++..+||||.||..||..|...+..||+||.+..+.+.
T Consensus 235 i~~a~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRS---NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCCC---CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 3445578999999988 99999999999999999999999999999999877653
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.99 E-value=7.1e-10 Score=99.15 Aligned_cols=53 Identities=28% Similarity=0.620 Sum_probs=43.6
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhc----------------CCCCcccCccCCCCCccc
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL----------------NVKCPRCRCSVFPNLDLS 285 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~----------------~~~CP~CR~~i~~~~~~~ 285 (382)
++.+|+||++.++ +++.++|||.||..||.+|+.. ...||+||..+......+
T Consensus 17 ~~~~CpICld~~~---dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 17 GDFDCNICLDQVR---DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CccCCccCCCcCC---CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 3478999999987 8888999999999999999852 246999999987654433
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.8e-10 Score=100.98 Aligned_cols=56 Identities=25% Similarity=0.583 Sum_probs=47.0
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhc---CCCCcccCccCCCCCccccc
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL---NVKCPRCRCSVFPNLDLSAL 287 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR~~i~~~~~~~~~ 287 (382)
....+|.||++.-+ +++++.|||.||+.||.+|+.. ++.||+||+.|..+...+-.
T Consensus 45 ~~~FdCNICLd~ak---dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAK---DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccC---CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 34568999999988 9999999999999999999974 34599999999877665543
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.93 E-value=7.1e-10 Score=78.52 Aligned_cols=46 Identities=43% Similarity=0.879 Sum_probs=40.5
Q ss_pred ccccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
+..|.||++... .+..+||||. ||..|+.+|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 368999999987 8999999999 999999999999999999998874
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.85 E-value=1.5e-09 Score=73.93 Aligned_cols=38 Identities=39% Similarity=1.100 Sum_probs=30.6
Q ss_pred cccccccccCCCceeeeCCCCccChhhHHHHHhcC----CCCccc
Q 016797 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----VKCPRC 274 (382)
Q Consensus 234 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~CP~C 274 (382)
|+||++.+. +|+.|+|||.||..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~---~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 99999999999999999998753 359987
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.85 E-value=1.6e-09 Score=72.67 Aligned_cols=38 Identities=50% Similarity=1.184 Sum_probs=33.1
Q ss_pred cccccccccCCCce-eeeCCCCccChhhHHHHHhcCCCCccc
Q 016797 234 CPICLEEFHVGNEV-RGLPCAHNFHIECIDEWLRLNVKCPRC 274 (382)
Q Consensus 234 C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~~~~CP~C 274 (382)
|+||++.+. ++ +.++|||.||..|+.+|++.+.+||+|
T Consensus 1 C~iC~~~~~---~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR---DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S---SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc---CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999988 56 688999999999999999998899998
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=5.8e-09 Score=109.09 Aligned_cols=52 Identities=38% Similarity=0.951 Sum_probs=45.3
Q ss_pred CCccccccccccccCCCc--eeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 229 TDCSECPICLEEFHVGNE--VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~--~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..++.|+||.|.+..+.+ ++++||+|.||..|++.|+++.++||.||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 346799999999986544 8999999999999999999999999999985443
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.72 E-value=9.6e-09 Score=69.84 Aligned_cols=44 Identities=55% Similarity=1.213 Sum_probs=35.7
Q ss_pred ccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccC
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSV 278 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i 278 (382)
.|+||++.+. +.....+|||.||..|++.|++. +..||.||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999984 23444459999999999999987 77799998753
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.5e-09 Score=90.85 Aligned_cols=52 Identities=31% Similarity=0.684 Sum_probs=43.0
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
+....|+|||+.+.. +.++.+.|||+||..||+.-++....||+||++|..+
T Consensus 129 ~~~~~CPiCl~~~se-k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSE-KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhh-ccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 344689999999872 2346688999999999999999999999999877543
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.67 E-value=1.8e-08 Score=74.54 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=41.7
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|+||.+.+. +++.++|||+|+..||.+|++.+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~---~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMK---DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCC---CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 46999999998 78999999999999999999988899999987743
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.65 E-value=1.8e-08 Score=69.37 Aligned_cols=44 Identities=34% Similarity=0.764 Sum_probs=38.6
Q ss_pred ccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
.|.||.+.+...+.+..++|||.||..|+.........||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999966667899999999999999998866678999984
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.61 E-value=2.3e-08 Score=67.60 Aligned_cols=38 Identities=53% Similarity=1.274 Sum_probs=33.6
Q ss_pred cccccccccCCCcee-eeCCCCccChhhHHHHHh--cCCCCccc
Q 016797 234 CPICLEEFHVGNEVR-GLPCAHNFHIECIDEWLR--LNVKCPRC 274 (382)
Q Consensus 234 C~IC~~~~~~~~~~~-~lpC~H~Fh~~Ci~~wl~--~~~~CP~C 274 (382)
|+||++.+. .+. .++|||.||..|+.+|++ ....||.|
T Consensus 1 C~iC~~~~~---~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE---DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS---SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc---CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988 555 889999999999999998 55679988
No 20
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.61 E-value=2.7e-08 Score=77.29 Aligned_cols=49 Identities=37% Similarity=0.786 Sum_probs=37.3
Q ss_pred ccccccccccccC--------CCc-eeee-CCCCccChhhHHHHHhc---CCCCcccCccCC
Q 016797 231 CSECPICLEEFHV--------GNE-VRGL-PCAHNFHIECIDEWLRL---NVKCPRCRCSVF 279 (382)
Q Consensus 231 ~~~C~IC~~~~~~--------~~~-~~~l-pC~H~Fh~~Ci~~wl~~---~~~CP~CR~~i~ 279 (382)
++.|.||...|.. |+. +..+ .|+|.||..||.+|+.. +.+||+||+...
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5789999988852 222 3333 49999999999999985 467999998753
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=98.58 E-value=2.7e-08 Score=90.07 Aligned_cols=50 Identities=34% Similarity=0.606 Sum_probs=37.2
Q ss_pred CccccccccccccCC----C--ceeeeCCCCccChhhHHHHHhcC------CCCcccCccCC
Q 016797 230 DCSECPICLEEFHVG----N--EVRGLPCAHNFHIECIDEWLRLN------VKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~----~--~~~~lpC~H~Fh~~Ci~~wl~~~------~~CP~CR~~i~ 279 (382)
.+.+|+||++..... + -....+|+|.||..||+.|.+.+ .+||+||....
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 457899999986421 1 12344699999999999998743 35999998654
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.55 E-value=5.2e-08 Score=63.83 Aligned_cols=38 Identities=53% Similarity=1.230 Sum_probs=33.7
Q ss_pred cccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCccc
Q 016797 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRC 274 (382)
Q Consensus 234 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~C 274 (382)
|+||++... .+..++|||.||..|++.|++ .+..||.|
T Consensus 1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999854 889999999999999999998 66679987
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=7.1e-08 Score=96.00 Aligned_cols=49 Identities=31% Similarity=0.571 Sum_probs=43.5
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
....|+||++.+. .++.++|||.||..||..|+.....||.||..+...
T Consensus 25 ~~l~C~IC~d~~~---~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFD---VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhh---CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 3478999999998 788899999999999999999888899999977643
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.7e-08 Score=89.14 Aligned_cols=52 Identities=33% Similarity=0.744 Sum_probs=44.5
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHH-HHhcCCC-CcccCccCCCCCc
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDE-WLRLNVK-CPRCRCSVFPNLD 283 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~-wl~~~~~-CP~CR~~i~~~~~ 283 (382)
..+..|+||++... .+..++|||+||..||-. |-.++.. ||+||+++.+++.
T Consensus 213 ~~d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPE---VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccC---CcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 34578999999988 899999999999999998 8666555 9999999887654
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.4e-06 Score=86.80 Aligned_cols=51 Identities=33% Similarity=0.961 Sum_probs=39.7
Q ss_pred CccccccccccccC---CC-----------ceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCC
Q 016797 230 DCSECPICLEEFHV---GN-----------EVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP 280 (382)
Q Consensus 230 ~~~~C~IC~~~~~~---~~-----------~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~ 280 (382)
....|+||+.++.. +. .-..+||.|+||..|+..|+. .+-.||+||+++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34689999988642 11 134569999999999999999 45589999998864
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.31 E-value=4e-07 Score=62.17 Aligned_cols=34 Identities=38% Similarity=0.856 Sum_probs=21.8
Q ss_pred cccccccccC-CCceeeeCCCCccChhhHHHHHhcC
Q 016797 234 CPICLEEFHV-GNEVRGLPCAHNFHIECIDEWLRLN 268 (382)
Q Consensus 234 C~IC~~~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~ 268 (382)
|+||.+ +.. ...++.|+|||+||.+|+.++++..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 653 3458999999999999999998843
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.27 E-value=2.4e-07 Score=88.24 Aligned_cols=47 Identities=34% Similarity=0.753 Sum_probs=43.5
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
..|-||.+.|. .+..+||+|.||..||+..|..+..||.|+..+...
T Consensus 24 LRC~IC~eyf~---ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 24 LRCGICFEYFN---IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHhHHHHHhc---CceeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 58999999999 899999999999999999999999999999877543
No 28
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.24 E-value=7.5e-07 Score=67.59 Aligned_cols=47 Identities=34% Similarity=0.658 Sum_probs=34.5
Q ss_pred ccccccccccCCCce-eeeC-CCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 233 ECPICLEEFHVGNEV-RGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~-~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
.|+-|...+..+++. ...- |.|.||..||.+||..+..||++|++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 344444444444443 3333 9999999999999999999999998754
No 29
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.21 E-value=5.9e-07 Score=84.00 Aligned_cols=45 Identities=29% Similarity=0.518 Sum_probs=41.7
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
..|-||-+.+. .+..++|||.||..||+..|..+..||+||.+..
T Consensus 26 lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhheee---cceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 68999999998 8899999999999999999999999999998643
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.20 E-value=8.7e-07 Score=67.80 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=39.0
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~ 281 (382)
...|+||.+.+. +|+.+||||.|...||..|++. +.+||.|+..+...
T Consensus 4 ~f~CpIt~~lM~---dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMR---DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-S---SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhh---CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 368999999999 9999999999999999999998 88899999887654
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=7.3e-07 Score=89.65 Aligned_cols=50 Identities=30% Similarity=0.571 Sum_probs=41.3
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcC-----CCCcccCccCCCCCc
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-----VKCPRCRCSVFPNLD 283 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-----~~CP~CR~~i~~~~~ 283 (382)
+..|+||++... -+..+.|||+||..||-..+... ..||+||..|.+...
T Consensus 186 ~~~CPICL~~~~---~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCC---cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 578999999987 77777899999999999887643 459999998876443
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.3e-06 Score=82.80 Aligned_cols=50 Identities=32% Similarity=0.592 Sum_probs=43.3
Q ss_pred CccccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 282 (382)
+..+|.||+.+.+ +...|||.|. .|..|.+..--+++.||+||+++....
T Consensus 289 ~gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 289 SGKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELL 339 (349)
T ss_pred CCCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence 3579999999998 9999999997 999999887667888999999886543
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.99 E-value=4.5e-06 Score=80.14 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=37.3
Q ss_pred ccccccccccccCCCce--eeeCCCCccChhhHHHHHh-cCCCCcccCccCCCCC
Q 016797 231 CSECPICLEEFHVGNEV--RGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPNL 282 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~--~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~~ 282 (382)
+..|++|...-...... ..-+|||.||..|++..+. ....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 35899999963322222 2227999999999999664 4557999998776554
No 34
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.95 E-value=6.2e-06 Score=58.04 Aligned_cols=42 Identities=29% Similarity=0.725 Sum_probs=33.8
Q ss_pred ccccccccccCCCceeeeCCC-----CccChhhHHHHHhc--CCCCcccC
Q 016797 233 ECPICLEEFHVGNEVRGLPCA-----HNFHIECIDEWLRL--NVKCPRCR 275 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~--~~~CP~CR 275 (382)
.|.||++ ...++++...||. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 4455677889985 89999999999964 44799995
No 35
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.8e-06 Score=65.04 Aligned_cols=48 Identities=33% Similarity=0.687 Sum_probs=35.5
Q ss_pred ccccccccccccC---------CCceeeeC-CCCccChhhHHHHHhc---CCCCcccCccC
Q 016797 231 CSECPICLEEFHV---------GNEVRGLP-CAHNFHIECIDEWLRL---NVKCPRCRCSV 278 (382)
Q Consensus 231 ~~~C~IC~~~~~~---------~~~~~~lp-C~H~Fh~~Ci~~wl~~---~~~CP~CR~~i 278 (382)
++.|-||.-.|.. ++-|..+- |.|.||..||.+|+.. +..||+||+..
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 3478888887742 23344444 9999999999999974 34599999864
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=4.2e-06 Score=79.47 Aligned_cols=44 Identities=43% Similarity=0.868 Sum_probs=38.6
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
+...|+||++.+. .++.+||+|.||..|+..++.....||.||.
T Consensus 12 ~~~~C~iC~~~~~---~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFR---EPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhh---cCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4578999999999 6699999999999999999885557999993
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.2e-06 Score=77.44 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=41.6
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCCCc
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPNLD 283 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~~~ 283 (382)
.+|+||+.... .++.|+|+|.||..||+.-... ..+|++||.++.....
T Consensus 8 ~eC~IC~nt~n---~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 8 KECLICYNTGN---CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred CcceeeeccCC---cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 68999999887 8899999999999999987664 4569999999876543
No 38
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.5e-06 Score=58.76 Aligned_cols=45 Identities=29% Similarity=0.565 Sum_probs=36.7
Q ss_pred cccccccccccCCCceeeeCCCCc-cChhhHHHHHh-cCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLR-LNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~-~~~~CP~CR~~i~ 279 (382)
++|.||++... +.+.-.|||. .|..|-.+-++ .+..||+||+++.
T Consensus 8 dECTICye~pv---dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPV---DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcc---hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 78999999866 6666779997 99999666555 6788999998774
No 39
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.81 E-value=4.6e-05 Score=74.36 Aligned_cols=47 Identities=32% Similarity=0.803 Sum_probs=39.6
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhc--CCCCcccCccCCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSVFPN 281 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~CR~~i~~~ 281 (382)
.-|.||-+.-+ +++.-||||..|..|+..|-.. .++||.||..|...
T Consensus 370 eLCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 36999998866 7888899999999999999743 57899999987644
No 40
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.5e-05 Score=63.52 Aligned_cols=49 Identities=27% Similarity=0.609 Sum_probs=36.1
Q ss_pred Ccccccccccccc-------------CCCceeeeC-CCCccChhhHHHHHhcCCCCcccCccC
Q 016797 230 DCSECPICLEEFH-------------VGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSV 278 (382)
Q Consensus 230 ~~~~C~IC~~~~~-------------~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i 278 (382)
..+.|+||..-+- .++-.+..- |+|.||..||.+|++.+..||+|.++-
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 3467998875541 112233333 999999999999999999999998654
No 41
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.69 E-value=1.1e-05 Score=85.88 Aligned_cols=50 Identities=26% Similarity=0.783 Sum_probs=37.3
Q ss_pred CccccccccccccCCCc---eeeeC-CCCccChhhHHHHHhc--CCCCcccCccCC
Q 016797 230 DCSECPICLEEFHVGNE---VRGLP-CAHNFHIECIDEWLRL--NVKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~---~~~lp-C~H~Fh~~Ci~~wl~~--~~~CP~CR~~i~ 279 (382)
.-.+|+||...+..-+. -+..+ |+|.||..|+-+|++. +.+||+||..+.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34689999988762111 12333 9999999999999984 567999997764
No 42
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.67 E-value=9e-06 Score=61.66 Aligned_cols=49 Identities=29% Similarity=0.648 Sum_probs=22.8
Q ss_pred cccccccccccc-CCCceee----eCCCCccChhhHHHHHhc----C-------CCCcccCccCC
Q 016797 231 CSECPICLEEFH-VGNEVRG----LPCAHNFHIECIDEWLRL----N-------VKCPRCRCSVF 279 (382)
Q Consensus 231 ~~~C~IC~~~~~-~~~~~~~----lpC~H~Fh~~Ci~~wl~~----~-------~~CP~CR~~i~ 279 (382)
+.+|.||++... .++.+.. -.|++.||..|+.+|+.. + .+||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 368999999875 3333322 248999999999999863 1 14999998763
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.63 E-value=1.2e-05 Score=58.93 Aligned_cols=43 Identities=30% Similarity=0.783 Sum_probs=23.3
Q ss_pred cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
..|++|.+.++ +++.+ .|.|+||..|+..-+. ..||+|+.+..
T Consensus 8 LrCs~C~~~l~---~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 8 LRCSICFDILK---EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TS-SSS-S--S---S-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred cCCcHHHHHhc---CCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 58999999998 77654 5999999999988554 35999987653
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=9.5e-06 Score=78.17 Aligned_cols=52 Identities=35% Similarity=0.690 Sum_probs=42.5
Q ss_pred ccccccccccccCCCceeeeC-CCCccChhhHHHHHh-cCCCCcccCccCCCCCccc
Q 016797 231 CSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLR-LNVKCPRCRCSVFPNLDLS 285 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~~~~~ 285 (382)
+..|+||++.++ ..+..+ |.|.||..||..-++ .++.||.||..+.....+.
T Consensus 43 ~v~c~icl~llk---~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr 96 (381)
T KOG0311|consen 43 QVICPICLSLLK---KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLR 96 (381)
T ss_pred hhccHHHHHHHH---hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCC
Confidence 368999999998 666666 999999999988776 4678999999876665554
No 45
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=3.7e-05 Score=74.83 Aligned_cols=47 Identities=32% Similarity=0.858 Sum_probs=35.9
Q ss_pred cccccccccccCCCceeeeC-CCCccChhhHHHHHhc---CCCCcccCccC
Q 016797 232 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRL---NVKCPRCRCSV 278 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~---~~~CP~CR~~i 278 (382)
..|.||.+.+....+...+. |||+||..|+..|+.. +.+||+||-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 58999965555445555555 9999999999999984 35799999433
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=9.8e-05 Score=73.85 Aligned_cols=49 Identities=31% Similarity=0.685 Sum_probs=43.7
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..+.+|.||...+. +++.+||||.||..||.+-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~---~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALY---PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcC---CCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 34679999999998 89999999999999999988888889999998874
No 47
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.39 E-value=5.8e-05 Score=74.89 Aligned_cols=47 Identities=32% Similarity=0.890 Sum_probs=37.1
Q ss_pred ccccccccccccCCC-ceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 231 CSECPICLEEFHVGN-EVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
-..|+||++.+.... ......|.|.||..|+..|.. .+||+||.-..
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 357999999986432 235666999999999999965 58999997554
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=7e-05 Score=78.99 Aligned_cols=48 Identities=25% Similarity=0.612 Sum_probs=40.6
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPNL 282 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~~ 282 (382)
..|++|-...+ +.+...|+|+||..|+..-+. ++..||.|.+.+-++.
T Consensus 644 LkCs~Cn~R~K---d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWK---DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchh---hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 48999998887 788888999999999999887 4567999998876553
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.15 E-value=0.00014 Score=68.76 Aligned_cols=49 Identities=29% Similarity=0.676 Sum_probs=41.6
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhc-----------------------CCCCcccCccCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-----------------------NVKCPRCRCSVF 279 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----------------------~~~CP~CR~~i~ 279 (382)
...|.||+--|..++...+++|-|.||..|+.+.|.. ...||+||..|.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4689999999999888999999999999999988731 124999999765
No 50
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00022 Score=69.95 Aligned_cols=51 Identities=31% Similarity=0.722 Sum_probs=37.2
Q ss_pred CCccccccccccccCCC--c--eee-eCCCCccChhhHHHHH--hc-----CCCCcccCccCC
Q 016797 229 TDCSECPICLEEFHVGN--E--VRG-LPCAHNFHIECIDEWL--RL-----NVKCPRCRCSVF 279 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~--~--~~~-lpC~H~Fh~~Ci~~wl--~~-----~~~CP~CR~~i~ 279 (382)
..+..|.||++...... . -.. .+|.|.||..||+.|- .+ .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 44679999999976322 0 112 3499999999999997 33 467999997654
No 51
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.03 E-value=0.00013 Score=76.48 Aligned_cols=49 Identities=31% Similarity=0.542 Sum_probs=41.3
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|++|+..+..+......+|+|.||..|+..|-+..++||+||..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4688888888766666677899999999999999999999999986543
No 52
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00043 Score=68.07 Aligned_cols=48 Identities=35% Similarity=0.978 Sum_probs=37.2
Q ss_pred ccccccccccccCC-C-ceeeeCCCCccChhhHHHHHhc--CCCCcccCccC
Q 016797 231 CSECPICLEEFHVG-N-EVRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSV 278 (382)
Q Consensus 231 ~~~C~IC~~~~~~~-~-~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~CR~~i 278 (382)
...|+||++.+... + ....+.|||.|...||++|+.+ ...||.|..+-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 46899999998643 3 3455669999999999999963 23499998754
No 53
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00013 Score=70.87 Aligned_cols=43 Identities=28% Similarity=0.550 Sum_probs=32.7
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
...|.||++... +...+||||+-| |..-- +...+||+||..+.
T Consensus 305 p~lcVVcl~e~~---~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPK---SAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCcc---ceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 468999999988 799999999855 44332 23345999998774
No 54
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0012 Score=63.92 Aligned_cols=72 Identities=24% Similarity=0.467 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCcccccc----CC-CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 206 AAQREAVEALIQELPKFRLKA----VP-TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 206 ~~~~~~~~~~~~~lp~~~~~~----~~-~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
......++.++..+|..+... .. .+++.|+||...-. ..+..||+|.-|+.||.+-+-..+.|=.|+..+..
T Consensus 392 ~~e~~~V~r~~~~l~~~~~~~~~~~lp~sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 392 NFESHLVNRASSQLPERKEESFNKDLPDSEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred HHHHHHHHHHHhhcchhhHHhhcCCCCCcccccCcceecccc---hhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 344455666777777655422 22 45689999988766 78889999999999999999999999999987753
No 55
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.69 E-value=0.00054 Score=61.18 Aligned_cols=44 Identities=20% Similarity=0.433 Sum_probs=39.2
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i 278 (382)
..|.||..+|+ .++.+.|||.||..|.-.-.+....|-+|-...
T Consensus 197 F~C~iCKkdy~---spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYE---SPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhcc---chhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 58999999999 999999999999999888788888999997643
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.68 E-value=0.00082 Score=67.72 Aligned_cols=53 Identities=30% Similarity=0.641 Sum_probs=44.2
Q ss_pred CCccccccccccccCCCceee-eCCCCccChhhHHHHHhcCCCCcccCccCCCCCcc
Q 016797 229 TDCSECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDL 284 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~~ 284 (382)
+.+..|++|...+. .+.. ..|||.||..|+..|+..+..||.|+..+......
T Consensus 19 ~~~l~C~~C~~vl~---~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLR---DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCcccccccc---CCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 34578999999998 6666 58999999999999999999999998876554443
No 57
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.61 E-value=0.00055 Score=65.81 Aligned_cols=49 Identities=22% Similarity=0.523 Sum_probs=40.3
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 282 (382)
..|.+|...+. +......|-|.||.+||...+.....||.|...+-...
T Consensus 16 itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 16 ITCRLCGGYLI--DATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred eehhhccceee--cchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 58999999998 23344459999999999999999999999998765443
No 58
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.002 Score=60.46 Aligned_cols=49 Identities=29% Similarity=0.506 Sum_probs=38.4
Q ss_pred CCCccccccccccccCCCceeee-CCCCccChhhHHHHHh--cCCCCcccCccCC
Q 016797 228 PTDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR--LNVKCPRCRCSVF 279 (382)
Q Consensus 228 ~~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~--~~~~CP~CR~~i~ 279 (382)
.+.+.+|++|.+... .|... +|||+||..|+..-.. ...+||.|-+++.
T Consensus 236 ~t~~~~C~~Cg~~Pt---iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPT---IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCC---CCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345679999999876 56555 4999999999988654 3468999987765
No 59
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.00093 Score=63.07 Aligned_cols=43 Identities=26% Similarity=0.567 Sum_probs=35.7
Q ss_pred ccccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..-|+||++... +.+.|+|||. -|..|-+.. ..||+||+.+..
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----ccCchHHHHHHH
Confidence 467999999888 9999999995 899997553 379999987643
No 60
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.35 E-value=0.002 Score=46.72 Aligned_cols=40 Identities=30% Similarity=0.703 Sum_probs=27.6
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHHHHhc--CCCCcc
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL--NVKCPR 273 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~--~~~CP~ 273 (382)
...|+|.+..++ +|+.- .|||.|-+..|..+++. ...||+
T Consensus 11 ~~~CPiT~~~~~---~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE---DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S---SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh---CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 468999999998 66654 69999999999999943 445998
No 61
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0048 Score=56.25 Aligned_cols=52 Identities=31% Similarity=0.791 Sum_probs=42.0
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhc--------CCCCcccCccCCCCCcc
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--------NVKCPRCRCSVFPNLDL 284 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~CR~~i~~~~~~ 284 (382)
..|..|-..+..||. ..|-|-|.||.+|+..|-.. ...||.|..+|+++..+
T Consensus 51 pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred CCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 479999999887655 46679999999999999653 23599999999987654
No 62
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.30 E-value=0.0013 Score=64.43 Aligned_cols=46 Identities=37% Similarity=0.854 Sum_probs=37.5
Q ss_pred ccccccccccccCC-CceeeeCCCCccChhhHHHHHhcC--CCCcccCc
Q 016797 231 CSECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLN--VKCPRCRC 276 (382)
Q Consensus 231 ~~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~--~~CP~CR~ 276 (382)
+..|..|.+.+-.. +..-.|||.|+||..|+...+.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 35799999988543 456779999999999999999764 46999994
No 63
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0018 Score=61.43 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=40.3
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
..|-||...|. .++...|+|.||..|-..=++....|++|.+...
T Consensus 242 f~c~icr~~f~---~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFY---RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccc---cchhhcCCceeehhhhccccccCCcceecccccc
Confidence 46999999999 9999999999999998888888889999987653
No 64
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.96 E-value=0.0045 Score=69.00 Aligned_cols=51 Identities=27% Similarity=0.613 Sum_probs=40.1
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcC----------CCCcccCccCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----------VKCPRCRCSVFP 280 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----------~~CP~CR~~i~~ 280 (382)
.++.|.||..+--.......|.|+|.||..|.+..|+++ -.||+|+.+|..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 357899998876545567889999999999998877642 149999998753
No 65
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.84 E-value=0.0037 Score=63.39 Aligned_cols=48 Identities=29% Similarity=0.640 Sum_probs=39.3
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHh-----cCCCCcccCccCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-----LNVKCPRCRCSVFP 280 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-----~~~~CP~CR~~i~~ 280 (382)
.+-+|.+|-+.-+ +.....|.|.||..|+..++. .+.+||.|.-.+.-
T Consensus 535 ~~~~C~lc~d~ae---d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAE---DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhh---hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 3468999999877 788889999999999998875 35679999765543
No 66
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.82 E-value=0.0076 Score=58.27 Aligned_cols=49 Identities=24% Similarity=0.569 Sum_probs=39.9
Q ss_pred cCCCCccccccccccccCCCceeeeCCCCccChhhHHHH--HhcCCCCcccCcc
Q 016797 226 AVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEW--LRLNVKCPRCRCS 277 (382)
Q Consensus 226 ~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~w--l~~~~~CP~CR~~ 277 (382)
+.++++..|.||-+... ....+||+|..|.-|--+- |...+.||+||..
T Consensus 56 dtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 56 DTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 33455668999999987 8889999999999997543 6678899999975
No 67
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0071 Score=59.84 Aligned_cols=46 Identities=33% Similarity=0.812 Sum_probs=36.9
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhc--------CCCCcccCcc
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--------NVKCPRCRCS 277 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~CR~~ 277 (382)
..|.||++........+.+||+|+||..|+...... .-.||-|..+
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 689999999765577899999999999999999752 2248776653
No 68
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.45 E-value=0.0089 Score=48.52 Aligned_cols=33 Identities=27% Similarity=0.707 Sum_probs=27.1
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHH
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECID 262 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~ 262 (382)
+++..|++|...+.. ......||||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 345679999999864 567788999999999975
No 69
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=0.011 Score=63.39 Aligned_cols=62 Identities=27% Similarity=0.573 Sum_probs=41.8
Q ss_pred HHHHHHhcCccccccCCCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797 212 VEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278 (382)
Q Consensus 212 ~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i 278 (382)
.++..+.+...+..+..-+...|..|--.+. -..+...|||.||.+|+. .....||.|+...
T Consensus 821 i~e~r~~l~~lr~sa~i~q~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 821 IEEKRQELETLRTSAQIFQVSKCSACEGTLD--LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred HHHHHHHHHHhhcccceeeeeeecccCCccc--cceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 3333344444444443334468999988876 245667799999999998 4566799998633
No 70
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.31 E-value=0.0085 Score=50.78 Aligned_cols=43 Identities=23% Similarity=0.472 Sum_probs=33.4
Q ss_pred cccccccccccCCCceeeeCCC------CccChhhHHHHHhcCCCCccc
Q 016797 232 SECPICLEEFHVGNEVRGLPCA------HNFHIECIDEWLRLNVKCPRC 274 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~------H~Fh~~Ci~~wl~~~~~CP~C 274 (382)
-+|+||++.+..++.++.++|| |.||.+|+.+|-+.+..=|.=
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfn 75 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFN 75 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcc
Confidence 5899999999875677888886 899999999995444433433
No 71
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.23 E-value=0.016 Score=40.38 Aligned_cols=45 Identities=27% Similarity=0.625 Sum_probs=22.2
Q ss_pred cccccccccCC-CceeeeCCCCccChhhHHHHHh-cCCCCcccCccC
Q 016797 234 CPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSV 278 (382)
Q Consensus 234 C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i 278 (382)
|++|.+++... ....--+||+..|..|....++ ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78899988322 2233334899999999998886 477899999753
No 72
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.98 E-value=0.015 Score=55.13 Aligned_cols=42 Identities=36% Similarity=0.805 Sum_probs=36.1
Q ss_pred cccccccccccCCCceeeeC-CCCccChhhHHHHH-hcCCCCcccCc
Q 016797 232 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWL-RLNVKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~ 276 (382)
..|+.|...+. .+.++| |+|.||..||..-| .....||.|..
T Consensus 275 LkCplc~~Llr---np~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLR---NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhh---CcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 68999999988 888887 89999999998665 45678999976
No 73
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.0095 Score=51.70 Aligned_cols=30 Identities=40% Similarity=0.898 Sum_probs=27.0
Q ss_pred CCccccccccccccCCCceeeeCCCCccCh
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHI 258 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~ 258 (382)
.+..+|.||+|++..++.+..|||-.++|+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 445799999999999999999999988886
No 74
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.76 E-value=0.011 Score=54.77 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=32.1
Q ss_pred ccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
.|..|...-. ++.-..+.|+|+||..|...-. ...||+||..+.
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceee
Confidence 4666665544 5667788899999999975432 237999999764
No 75
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.75 E-value=0.023 Score=39.54 Aligned_cols=40 Identities=38% Similarity=0.827 Sum_probs=26.8
Q ss_pred cccccccccCCCceeeeCCC-----CccChhhHHHHHh--cCCCCccc
Q 016797 234 CPICLEEFHVGNEVRGLPCA-----HNFHIECIDEWLR--LNVKCPRC 274 (382)
Q Consensus 234 C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~--~~~~CP~C 274 (382)
|-||++.-..++ +...||+ ...|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679998876444 6677864 3689999999997 45669887
No 76
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.023 Score=54.80 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=37.9
Q ss_pred CCccccccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCcccCcc
Q 016797 229 TDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCS 277 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~ 277 (382)
.+...|++|+..-. ++..+. -|-+||..|+-..+..++.||+=..+
T Consensus 298 ~~~~~CpvClk~r~---Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQ---NPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CccccChhHHhccC---CCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 34578999999877 666666 69999999999999999999986543
No 77
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.19 E-value=0.045 Score=47.64 Aligned_cols=50 Identities=26% Similarity=0.527 Sum_probs=35.5
Q ss_pred CCCccccccccccccCCCceeeeCC--CC---ccChhhHHHHHhc--CCCCcccCccCCCC
Q 016797 228 PTDCSECPICLEEFHVGNEVRGLPC--AH---NFHIECIDEWLRL--NVKCPRCRCSVFPN 281 (382)
Q Consensus 228 ~~~~~~C~IC~~~~~~~~~~~~lpC--~H---~Fh~~Ci~~wl~~--~~~CP~CR~~i~~~ 281 (382)
...+..|-||.+... +. .-|| .. .-|.+|+++|+.. ...|+.|+.+....
T Consensus 5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 345578999998853 22 2465 44 4699999999975 45699999876433
No 78
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.03 Score=54.13 Aligned_cols=47 Identities=32% Similarity=0.711 Sum_probs=38.7
Q ss_pred cccccccccccCCC---ceeeeCCCCccChhhHHHHHhc-CCCCcccCccC
Q 016797 232 SECPICLEEFHVGN---EVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSV 278 (382)
Q Consensus 232 ~~C~IC~~~~~~~~---~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i 278 (382)
..|-||-++|..++ .|+.|.|||.+|..|+...+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999998653 4788889999999999887764 34599999874
No 79
>PHA02862 5L protein; Provisional
Probab=94.12 E-value=0.035 Score=47.44 Aligned_cols=46 Identities=22% Similarity=0.558 Sum_probs=34.1
Q ss_pred cccccccccccCCCceeeeCCC-----CccChhhHHHHHhc--CCCCcccCccCCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCA-----HNFHIECIDEWLRL--NVKCPRCRCSVFPN 281 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~--~~~CP~CR~~i~~~ 281 (382)
+.|=||.+.-.+ . .-||. ..-|.+|+.+|+.. +..|+.|+.+..-.
T Consensus 3 diCWIC~~~~~e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDE--R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCC--C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 579999998542 2 35664 35899999999974 45699999876543
No 80
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.034 Score=49.05 Aligned_cols=48 Identities=29% Similarity=0.729 Sum_probs=34.2
Q ss_pred cccccccccccCCCc----eeeeCCCCccChhhHHHHHhc----CC-------CCcccCccCC
Q 016797 232 SECPICLEEFHVGNE----VRGLPCAHNFHIECIDEWLRL----NV-------KCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~----~~~lpC~H~Fh~~Ci~~wl~~----~~-------~CP~CR~~i~ 279 (382)
..|.||...--.|.. .-...||..||.-|+..||+. ++ .||.|..++.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 468888765443322 334569999999999999974 11 3999987764
No 81
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.80 E-value=0.034 Score=39.67 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=33.2
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
..|..|...-. ....+||||..|..|...+ +-+.||+|-.++...
T Consensus 8 ~~~~~~~~~~~---~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGT---KGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccccc---ccccccccceeeccccChh--hccCCCCCCCcccCC
Confidence 35666665544 7788999999999996553 345699999887654
No 82
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.77 E-value=0.057 Score=50.09 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=41.7
Q ss_pred cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
..|++|.+.+...-....| ||||+|+..|.++.+.....||+|-.++...
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 4799999999865555555 5999999999999999999999998777544
No 83
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.65 E-value=0.058 Score=57.94 Aligned_cols=48 Identities=35% Similarity=0.841 Sum_probs=35.7
Q ss_pred CCccccccccccccCCCceeee-CCCCccChhhHHHHHhcCC-------CCcccCc
Q 016797 229 TDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNV-------KCPRCRC 276 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~-------~CP~CR~ 276 (382)
....+|.||.+.+.....+-.- .|-|+||..||..|-+... .||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3457999999999755444322 2889999999999976421 3999984
No 84
>PHA03096 p28-like protein; Provisional
Probab=92.79 E-value=0.055 Score=52.10 Aligned_cols=45 Identities=31% Similarity=0.529 Sum_probs=31.5
Q ss_pred cccccccccccCCC----ceeeeC-CCCccChhhHHHHHhc---CCCCcccCc
Q 016797 232 SECPICLEEFHVGN----EVRGLP-CAHNFHIECIDEWLRL---NVKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~~----~~~~lp-C~H~Fh~~Ci~~wl~~---~~~CP~CR~ 276 (382)
..|.||++...... .--.|+ |.|.||..|++.|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999876321 123455 9999999999999753 334655553
No 85
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.61 E-value=0.11 Score=45.28 Aligned_cols=52 Identities=31% Similarity=0.622 Sum_probs=36.7
Q ss_pred ccccccccccccCCCceeeeCC------------CC-ccChhhHHHHHhc------------------------------
Q 016797 231 CSECPICLEEFHVGNEVRGLPC------------AH-NFHIECIDEWLRL------------------------------ 267 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC------------~H-~Fh~~Ci~~wl~~------------------------------ 267 (382)
+..|+||++... +.+.|-| +. .-|..|+++.-+.
T Consensus 2 d~~CpICme~PH---NAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 2 DVTCPICMEHPH---NAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CccCceeccCCC---ceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 468999999887 6666655 33 2578899987531
Q ss_pred -CCCCcccCccCCCCCccc
Q 016797 268 -NVKCPRCRCSVFPNLDLS 285 (382)
Q Consensus 268 -~~~CP~CR~~i~~~~~~~ 285 (382)
+-.||+||..|.......
T Consensus 79 ~~L~CPLCRG~V~GWtvve 97 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVVE 97 (162)
T ss_pred ccccCccccCceeceEEch
Confidence 114999999987665443
No 86
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.59 E-value=0.071 Score=36.32 Aligned_cols=41 Identities=29% Similarity=0.786 Sum_probs=23.8
Q ss_pred cccccccccCCCceeeeCCCCccChhhHHHHHhcCC--CCccc
Q 016797 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV--KCPRC 274 (382)
Q Consensus 234 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~C 274 (382)
|.+|.+....|.....-.|+=.+|..|++.+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 677888777555544445888999999999998655 69987
No 87
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.50 E-value=0.24 Score=49.13 Aligned_cols=74 Identities=19% Similarity=0.497 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCccccccCCCCccccccccccccC-------------C------CceeeeCCCCccChhhHHHHHhc
Q 016797 207 AQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHV-------------G------NEVRGLPCAHNFHIECIDEWLRL 267 (382)
Q Consensus 207 ~~~~~~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~-------------~------~~~~~lpC~H~Fh~~Ci~~wl~~ 267 (382)
.=.++-++.++.=|.....+..++.+.|--|+..-.. | .+....-|.-..|.+|+-+|+..
T Consensus 247 rF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFas 326 (358)
T PF10272_consen 247 RFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFAS 326 (358)
T ss_pred HHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhh
Confidence 3345666667777777777556666789999876421 0 00111124556789999999853
Q ss_pred -------------CCCCcccCccCCC
Q 016797 268 -------------NVKCPRCRCSVFP 280 (382)
Q Consensus 268 -------------~~~CP~CR~~i~~ 280 (382)
+-.||.||++...
T Consensus 327 rQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 327 RQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred cCCCCChhhhhcCCCCCCCCccccee
Confidence 2359999998653
No 88
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.061 Score=49.48 Aligned_cols=40 Identities=33% Similarity=0.532 Sum_probs=31.7
Q ss_pred ccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCC
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
.|-.|.+.-. .+..+||.|. +|..|-.. ...||+|+....
T Consensus 160 ~Cr~C~~~~~---~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREA---TVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCc---eEEeecccceEeccccccc----CccCCCCcChhh
Confidence 3999988766 7899999996 99999654 346999986553
No 89
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.073 Score=50.97 Aligned_cols=43 Identities=30% Similarity=0.559 Sum_probs=30.7
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i 278 (382)
-.|.-|--.+. ..-+.+||+|+||.+|.+. ...+.||.|-.+|
T Consensus 91 HfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 35777755554 2457789999999999754 3356799997654
No 90
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.57 E-value=0.32 Score=48.65 Aligned_cols=34 Identities=32% Similarity=0.698 Sum_probs=29.2
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHH
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWL 265 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl 265 (382)
+++..|+||...|+ +|..|||+|..|..|...-+
T Consensus 2 eeelkc~vc~~f~~---epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYR---EPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhcc---CceEeecccHHHHHHHHhhc
Confidence 34578999999999 99999999999999987543
No 91
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.37 E-value=0.24 Score=47.22 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=39.7
Q ss_pred CCccccccccccccCCCc-eeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797 229 TDCSECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 282 (382)
.....|+|....+..... +...||||+|...++...- ....||+|-.++....
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 345689999999853333 4455799999999999973 3567999998876443
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.26 E-value=0.15 Score=49.39 Aligned_cols=52 Identities=25% Similarity=0.609 Sum_probs=37.6
Q ss_pred CCccccccccccccCCCc-eeeeCCCCccChhhHHHHHh-cCCCCcccCccCCC
Q 016797 229 TDCSECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP 280 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~ 280 (382)
.+++.|+.|++.+...++ -.-.|||-..|..|....-+ .+..||-||.....
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 344669999999875443 45567999988888766543 35679999986543
No 93
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=0.16 Score=50.36 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=38.2
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcC---CCCcccCc
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN---VKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~---~~CP~CR~ 276 (382)
..|+|=.+.-.++..|..|.|||+.+.+-+.+.-+.. ..||+|-.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4799999988888889999999999999999987643 46999953
No 94
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.13 E-value=0.08 Score=56.90 Aligned_cols=47 Identities=28% Similarity=0.677 Sum_probs=38.1
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhc--CCCCcccCccCCCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSVFPNL 282 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~CR~~i~~~~ 282 (382)
..|.+|.+ . +.+...+|+|.||..|+..-+.. ...||.||..+....
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999999 3 48888999999999999888764 335999998765444
No 95
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=0.018 Score=56.52 Aligned_cols=51 Identities=25% Similarity=0.591 Sum_probs=43.6
Q ss_pred cccccccccccCC-CceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797 232 SECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 232 ~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 282 (382)
..|+||.+.++.. ++...+-|||..|..|+++|+.....||.|+..+....
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 5899999998754 56677889999999999999999889999999876543
No 96
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.81 E-value=0.13 Score=49.08 Aligned_cols=45 Identities=31% Similarity=0.751 Sum_probs=38.2
Q ss_pred cccccccccccCC-CceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797 232 SECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
..|+||.+.+... ..+..++|||.-|..|.+.....+-+||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 4599999987654 35678899999999999998877789999987
No 97
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=0.24 Score=53.75 Aligned_cols=36 Identities=22% Similarity=0.510 Sum_probs=28.4
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHH
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWL 265 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl 265 (382)
+.++.|.+|...+. ...-.+.||||.||+.|+.+-.
T Consensus 815 ep~d~C~~C~~~ll-~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLL-IKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhh-cCcceeeeccchHHHHHHHHHH
Confidence 34578999998875 2355778999999999998764
No 98
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.49 E-value=0.65 Score=33.18 Aligned_cols=39 Identities=26% Similarity=0.777 Sum_probs=31.8
Q ss_pred ccccccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCcc
Q 016797 231 CSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPR 273 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~ 273 (382)
...|.+|.+.+..++..+.-| ||-.+|++|.+. ...|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 357999999999888888888 999999999644 345655
No 99
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.59 E-value=0.85 Score=38.63 Aligned_cols=50 Identities=28% Similarity=0.504 Sum_probs=36.3
Q ss_pred CccccccccccccCCCceeeeC---CCCccChhhHHHHHh---cCCCCcccCccCCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLP---CAHNFHIECIDEWLR---LNVKCPRCRCSVFPN 281 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~wl~---~~~~CP~CR~~i~~~ 281 (382)
.-.+|.||.|... |+-..-| ||-..|..|....++ .+..||+|+.+....
T Consensus 79 ~lYeCnIC~etS~--ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSA--EERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccc--hhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3468999999876 2323333 899999999877665 356799999877543
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=0.5 Score=45.07 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=33.2
Q ss_pred ccccccccccCCCce--eeeCCCCccChhhHHHHHhc-CCCCcccCccCC
Q 016797 233 ECPICLEEFHVGNEV--RGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVF 279 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~--~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~ 279 (382)
.|++|..+.-..-.. ..-+|+|..|.+|.+..+.. ...||.|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 588998764332222 22379999999999998765 456999976443
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.39 E-value=0.2 Score=56.27 Aligned_cols=43 Identities=28% Similarity=0.665 Sum_probs=36.9
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
..|.||++.++. ......|||.+|..|...|+..+..||.|+.
T Consensus 1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 479999999871 3345569999999999999999999999985
No 102
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=82.97 E-value=0.8 Score=44.48 Aligned_cols=42 Identities=26% Similarity=0.696 Sum_probs=32.6
Q ss_pred ccccccccccccCCCceeeeCC--CCccChhhHHHHHhcCCCCcccCccCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPC--AHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC--~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
-.+|+||.+.+. .+ ...| ||.-|..|-.+ ....||.||.++.
T Consensus 48 lleCPvC~~~l~---~P-i~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLS---PP-IFQCDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCc---cc-ceecCCCcEehhhhhhh---hcccCCccccccc
Confidence 368999999987 33 3345 89999999753 4567999998876
No 103
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.02 E-value=0.75 Score=48.51 Aligned_cols=50 Identities=28% Similarity=0.677 Sum_probs=39.3
Q ss_pred CCCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCCc
Q 016797 227 VPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLD 283 (382)
Q Consensus 227 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~ 283 (382)
..+..+.|.+|.+.. ..+..+|. |..|+..|+..+..||.|++.+..+..
T Consensus 475 l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 334457899999987 45566787 899999999999999999987765543
No 104
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.36 E-value=0.38 Score=51.18 Aligned_cols=45 Identities=33% Similarity=0.731 Sum_probs=37.0
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhc---CCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL---NVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR~~i~ 279 (382)
.+|+||.+.+. ++..+.|.|.||..|+..-+.. ...||+|+..+.
T Consensus 22 lEc~ic~~~~~---~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 22 LECPICLEHVK---EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred ccCCceeEEee---ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 68999999998 7788899999999998776653 346999996554
No 105
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.84 E-value=0.92 Score=48.50 Aligned_cols=27 Identities=33% Similarity=0.659 Sum_probs=23.2
Q ss_pred eeeeCCCCccChhhHHHHHhcCCCCcc
Q 016797 247 VRGLPCAHNFHIECIDEWLRLNVKCPR 273 (382)
Q Consensus 247 ~~~lpC~H~Fh~~Ci~~wl~~~~~CP~ 273 (382)
.....|+|+.|.+|...|++....||-
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhcCCcCCC
Confidence 345669999999999999999889983
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.80 E-value=1.2 Score=44.87 Aligned_cols=37 Identities=27% Similarity=0.688 Sum_probs=27.1
Q ss_pred cccccccc-ccccCCCceeeeCCCCccChhhHHHHHhc
Q 016797 231 CSECPICL-EEFHVGNEVRGLPCAHNFHIECIDEWLRL 267 (382)
Q Consensus 231 ~~~C~IC~-~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~ 267 (382)
..+|.||. +.....+.-....|+|.||.+|.++.++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 46899999 44443333445669999999999988763
No 107
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.73 E-value=0.78 Score=43.05 Aligned_cols=49 Identities=22% Similarity=0.543 Sum_probs=33.7
Q ss_pred CccccccccccccCCCce-eeeCC-----CCccChhhHHHHHhcCC--------CCcccCccC
Q 016797 230 DCSECPICLEEFHVGNEV-RGLPC-----AHNFHIECIDEWLRLNV--------KCPRCRCSV 278 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~-~~lpC-----~H~Fh~~Ci~~wl~~~~--------~CP~CR~~i 278 (382)
.+..|-||+..-+++... -.-|| .|-.|..|+..|+..+. +||-|+.+.
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 345788999875532221 34566 36799999999986422 499999853
No 108
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=80.14 E-value=0.69 Score=32.02 Aligned_cols=34 Identities=21% Similarity=0.525 Sum_probs=23.4
Q ss_pred eeeCC-CCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 248 RGLPC-AHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 248 ~~lpC-~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
-...| .|..|..|+...+.....||+|..+++..
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 34557 58899999999999999999999887643
No 109
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=79.07 E-value=1.5 Score=47.26 Aligned_cols=50 Identities=30% Similarity=0.581 Sum_probs=37.0
Q ss_pred CCccccccccccccCCCceeeeCCCC-----ccChhhHHHHHhc--CCCCcccCccCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAH-----NFHIECIDEWLRL--NVKCPRCRCSVF 279 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H-----~Fh~~Ci~~wl~~--~~~CP~CR~~i~ 279 (382)
+++..|-||..+-.. +.+---||+. ..|.+|+.+|+.. ...|-+|+.++.
T Consensus 10 ~d~~~CRICr~e~~~-d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIR-DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCC-CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 344789999987543 4555667653 4899999999984 446999998764
No 110
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.99 E-value=1.3 Score=42.93 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=36.6
Q ss_pred CccccccccccccCCCc-eeeeCCC-----CccChhhHHHHHh--cCCCCcccCccCC
Q 016797 230 DCSECPICLEEFHVGNE-VRGLPCA-----HNFHIECIDEWLR--LNVKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~-~~~lpC~-----H~Fh~~Ci~~wl~--~~~~CP~CR~~i~ 279 (382)
++..|-||.++...... +...||. +..|..|+..|.. .+..|.+|.....
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 34689999997653222 5677864 4579999999987 4556999987554
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.84 E-value=1.8 Score=46.48 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=31.1
Q ss_pred cccccccccccCCCceeeeC--CCCccChhhHHHHHhcCCCCcc
Q 016797 232 SECPICLEEFHVGNEVRGLP--CAHNFHIECIDEWLRLNVKCPR 273 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~~~~~CP~ 273 (382)
..|.+|-..+. .....+ |||.-|.+|+..|+..+..||.
T Consensus 780 ~~CtVC~~vi~---G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR---GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee---eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 47889987776 333333 9999999999999999888876
No 112
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.15 E-value=1 Score=47.40 Aligned_cols=42 Identities=33% Similarity=0.644 Sum_probs=32.0
Q ss_pred cccccccccccC-CCceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797 232 SECPICLEEFHV-GNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
..|.||+..|.. .-+++.+-|||..|..|+..-. +.+|| |+.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 479999887753 2367888899999999997754 45798 654
No 113
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.14 E-value=2.7 Score=40.25 Aligned_cols=28 Identities=21% Similarity=0.608 Sum_probs=21.6
Q ss_pred CCCccChhhHHHHHhc-------------CCCCcccCccCC
Q 016797 252 CAHNFHIECIDEWLRL-------------NVKCPRCRCSVF 279 (382)
Q Consensus 252 C~H~Fh~~Ci~~wl~~-------------~~~CP~CR~~i~ 279 (382)
|....|.+|+.+|+.. +-+||.||++..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5567889999999742 446999999765
No 114
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=71.90 E-value=1.9 Score=40.10 Aligned_cols=46 Identities=24% Similarity=0.651 Sum_probs=33.0
Q ss_pred ccccccccccccCCCc--eeeeC-CCCccChhhHHHHHhcC-CCCc--ccCc
Q 016797 231 CSECPICLEEFHVGNE--VRGLP-CAHNFHIECIDEWLRLN-VKCP--RCRC 276 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~--~~~lp-C~H~Fh~~Ci~~wl~~~-~~CP--~CR~ 276 (382)
+..|++|..+--..-. ...-| |-|..|.+|.++.+... ..|| -|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 3589999987543323 33345 99999999999998754 4699 6754
No 115
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=70.88 E-value=2.3 Score=41.08 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCccccccccccccCCCceeeeC-----CCCccChhhHHHHHhcCCCCcccCc
Q 016797 229 TDCSECPICLEEFHVGNEVRGLP-----CAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lp-----C~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
.....|+||...... ..... -.|.+|..|-..|-..+..||.|-.
T Consensus 170 w~~g~CPvCGs~P~~---s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVL---SVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEE---EEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred ccCCcCCCCCCcCce---EEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 344799999887541 11111 1456888999999888889999964
No 116
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=67.51 E-value=5.7 Score=27.82 Aligned_cols=41 Identities=22% Similarity=0.554 Sum_probs=19.2
Q ss_pred cccccccccccCCCceee-eCCCCccChhhHHHHHhc-----CCCCcccCc
Q 016797 232 SECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRL-----NVKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 276 (382)
..|++....+. .|.+ ..|.|.-|.+ ++.|+.. .-.||+|.+
T Consensus 3 L~CPls~~~i~---~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIR---IPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-S---SEEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEE---eCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 46888888887 5544 4599986544 3445542 224999975
No 117
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=66.43 E-value=4.3 Score=39.33 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=35.0
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhc---CCCCcccC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL---NVKCPRCR 275 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR 275 (382)
..|++-.+.-.....|+.|.|||+.-..-++..-+. ...||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 479988887777778999999999999988876443 33599994
No 118
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.78 E-value=3.1 Score=39.69 Aligned_cols=33 Identities=24% Similarity=0.649 Sum_probs=26.6
Q ss_pred cccccccccccCCCceeeeCC----CCccChhhHHHHHhc
Q 016797 232 SECPICLEEFHVGNEVRGLPC----AHNFHIECIDEWLRL 267 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC----~H~Fh~~Ci~~wl~~ 267 (382)
..|.+|.|.++ +..-..| .|.||..|-+.-++.
T Consensus 269 LcCTLC~ERLE---DTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 269 LCCTLCHERLE---DTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred eeehhhhhhhc---cCceeecCCCcccceecccCHHHHHh
Confidence 57999999998 4444455 799999999988775
No 119
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=63.27 E-value=2.5 Score=44.51 Aligned_cols=42 Identities=31% Similarity=0.714 Sum_probs=25.6
Q ss_pred cccccccccc-----ccCCCceeeeCCCCccChhhHHHHHhcCCCCcccC
Q 016797 231 CSECPICLEE-----FHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275 (382)
Q Consensus 231 ~~~C~IC~~~-----~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 275 (382)
...|.+|... |+.....+...|+++||..|.+. +...||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 3567888332 22111233445999999999654 344499993
No 120
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=3.7 Score=41.38 Aligned_cols=43 Identities=26% Similarity=0.651 Sum_probs=31.0
Q ss_pred cccccccccccCCCce--eeeCCCCccChhhHHHHHhcCCCCccc
Q 016797 232 SECPICLEEFHVGNEV--RGLPCAHNFHIECIDEWLRLNVKCPRC 274 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~--~~lpC~H~Fh~~Ci~~wl~~~~~CP~C 274 (382)
..|+.|.-.++-.+.. ..-.|||.||..|...|...+..|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 4788888776543332 333499999999999998877777554
No 121
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.69 E-value=12 Score=36.14 Aligned_cols=48 Identities=29% Similarity=0.679 Sum_probs=38.6
Q ss_pred CccccccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
+.+.|-+|...+.. +.+-. |.|.|+..|...|......||.|+....+
T Consensus 104 ~~~~~~~~~g~l~v---pt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 104 DHDICYICYGKLTV---PTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CccceeeeeeeEEe---cccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 45689999988873 33333 99999999999999999999999986654
No 122
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.66 E-value=4.6 Score=41.51 Aligned_cols=37 Identities=32% Similarity=0.708 Sum_probs=30.5
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhc
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL 267 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~ 267 (382)
.....|-||.+.+.. ....+.|||.||..|+...+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 344689999999863 5777889999999999998864
No 123
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=60.68 E-value=4.9 Score=43.46 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=33.3
Q ss_pred cccccccccccCC-CceeeeC---CCCccChhhHHHHHhc------CCCCcccCccCC
Q 016797 232 SECPICLEEFHVG-NEVRGLP---CAHNFHIECIDEWLRL------NVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~-~~~~~lp---C~H~Fh~~Ci~~wl~~------~~~CP~CR~~i~ 279 (382)
..|.+|...+..+ +.--.+| |+|.||..||..|..+ +-.|++|..-+.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 4677777777642 2233444 9999999999999753 335889887553
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=60.67 E-value=4.6 Score=36.97 Aligned_cols=42 Identities=26% Similarity=0.654 Sum_probs=33.5
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 275 (382)
..|.+|...... ..+.=.|+-.+|..|+...++....||.|.
T Consensus 182 k~Cn~Ch~LvIq--g~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQ--GIRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHhHhHHHhhe--eeccCcccchhhhHHHHHHhcccCcCCchh
Confidence 579999988662 223334777899999999999999999994
No 125
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=59.98 E-value=6.8 Score=27.69 Aligned_cols=42 Identities=29% Similarity=0.572 Sum_probs=19.9
Q ss_pred cccccccccCCC------ceeeeC-CCCccChhhHHHHHhcCCCCcccC
Q 016797 234 CPICLEEFHVGN------EVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 275 (382)
Q Consensus 234 C~IC~~~~~~~~------~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR 275 (382)
|--|+..+..+. ....-| |++.||.+|=.-.=+.-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666665431 234445 999999999432223344699884
No 126
>PLN02400 cellulose synthase
Probab=59.47 E-value=30 Score=39.30 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=37.0
Q ss_pred cccccccccccCCC--ce--eeeCCCCccChhhHHHH-HhcCCCCcccCccCCCCCcccc
Q 016797 232 SECPICLEEFHVGN--EV--RGLPCAHNFHIECIDEW-LRLNVKCPRCRCSVFPNLDLSA 286 (382)
Q Consensus 232 ~~C~IC~~~~~~~~--~~--~~lpC~H~Fh~~Ci~~w-l~~~~~CP~CR~~i~~~~~~~~ 286 (382)
..|.||-++...+. ++ ..-.|+--.|+.|.+== -+.++.||-||......+..+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~Kgspr 96 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPR 96 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCC
Confidence 58999999975432 22 22337777999998321 2346779999998876664443
No 127
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=57.37 E-value=5.6 Score=24.00 Aligned_cols=22 Identities=32% Similarity=0.754 Sum_probs=12.6
Q ss_pred ccccccccccCCCceeeeC-CCCcc
Q 016797 233 ECPICLEEFHVGNEVRGLP-CAHNF 256 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lp-C~H~F 256 (382)
.|+-|...+. .....-| |||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 4666766654 2344445 77766
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=56.99 E-value=13 Score=36.42 Aligned_cols=48 Identities=25% Similarity=0.636 Sum_probs=36.3
Q ss_pred cccccccccccCCC-ceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGN-EVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
..|+||.+.....+ ...-.||+|..|..|+..-...+.+||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 58999999874322 2333458999999999888888899999995543
No 129
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.20 E-value=4.6 Score=43.71 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=32.4
Q ss_pred ccccccccccccC-C---CceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797 231 CSECPICLEEFHV-G---NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 231 ~~~C~IC~~~~~~-~---~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
+..|.-|.+.... + +....+.|||.||..|+..-..+++ |-.|..
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhhc
Confidence 4589999887643 2 3567888999999999876655444 666643
No 130
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=51.97 E-value=6.9 Score=38.16 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=36.3
Q ss_pred HHHHhcCccccccCCCCccccccccccccCCCceeee--C--CCCccChhhHHHHHhcCCCCcccCc
Q 016797 214 ALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGL--P--CAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 214 ~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l--p--C~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
.+...++.....+.......|+||...-..+. .+.- . =.|..|..|-..|-..+..||.|-.
T Consensus 167 ~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 167 HWALGLEGGAVVETRESRTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred HHHHhCCccccCcccCCCCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 33444554433332233458999988753110 0000 1 1245777888899888889999975
No 131
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=51.41 E-value=15 Score=23.07 Aligned_cols=37 Identities=24% Similarity=0.575 Sum_probs=24.4
Q ss_pred ccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i 278 (382)
.|..|.+.+..++ .....=+..||..|. .|..|+.++
T Consensus 1 ~C~~C~~~i~~~~-~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGE-LVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCc-EEEEeCCccccccCC--------CCcccCCcC
Confidence 3778888876432 222334778998883 788887655
No 132
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=51.19 E-value=19 Score=27.69 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=20.7
Q ss_pred ccccccccccccCCCc--e--eeeCCCCccChhhHHHHH-hcCCCCcccCccCCCCCccc
Q 016797 231 CSECPICLEEFHVGNE--V--RGLPCAHNFHIECIDEWL-RLNVKCPRCRCSVFPNLDLS 285 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~--~--~~lpC~H~Fh~~Ci~~wl-~~~~~CP~CR~~i~~~~~~~ 285 (382)
...|.||-++.-.... + ....|+--.|+.|.+-=. ..++.||-|+......+..+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp 68 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSP 68 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCC
Confidence 3689999998754322 2 223477789999986433 35678999998776655443
No 133
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=50.91 E-value=7.6 Score=28.65 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=17.4
Q ss_pred ccccccccccccCCCceeeeC-CCCccChhhHHHH
Q 016797 231 CSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEW 264 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~w 264 (382)
...|.+|...|..-.....-. ||++||..|....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 468999999997544444444 9999999997543
No 134
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=50.84 E-value=14 Score=31.15 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 016797 128 WLLFSYCGL 136 (382)
Q Consensus 128 ~l~~~~~~~ 136 (382)
|++|+++.+
T Consensus 2 W~l~~iii~ 10 (130)
T PF12273_consen 2 WVLFAIIIV 10 (130)
T ss_pred eeeHHHHHH
Confidence 555554433
No 135
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.25 E-value=6.7 Score=33.32 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=10.7
Q ss_pred cCCCCcccccccccc
Q 016797 226 AVPTDCSECPICLEE 240 (382)
Q Consensus 226 ~~~~~~~~C~IC~~~ 240 (382)
.-..++..|-||+..
T Consensus 60 aGv~ddatC~IC~KT 74 (169)
T KOG3799|consen 60 AGVGDDATCGICHKT 74 (169)
T ss_pred cccCcCcchhhhhhc
Confidence 334566899999865
No 136
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.22 E-value=9.9 Score=35.69 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=28.6
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHH
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWL 265 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl 265 (382)
+.|+.|++.+. .|+..|=||.|+..||...+
T Consensus 44 dcCsLtLqPc~---dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCR---DPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeeccccc---CCccCCCCeeeeHHHHHHHH
Confidence 57999999999 99999999999999998875
No 137
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=50.18 E-value=22 Score=34.79 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=37.6
Q ss_pred HhcCccccccCCCC----ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797 217 QELPKFRLKAVPTD----CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 217 ~~lp~~~~~~~~~~----~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
--+|-..+.+.+.. ...|-.|.+........+.-.|.|.||.+|-.-.-+.-..||-|..
T Consensus 312 hL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 312 HLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred hhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 33455555554432 3459999776654444444459999999995444344456999963
No 138
>PLN02189 cellulose synthase
Probab=50.06 E-value=20 Score=40.51 Aligned_cols=54 Identities=19% Similarity=0.368 Sum_probs=37.0
Q ss_pred cccccccccccC---CCceeeeC-CCCccChhhHHHHH-hcCCCCcccCccCCCCCccc
Q 016797 232 SECPICLEEFHV---GNEVRGLP-CAHNFHIECIDEWL-RLNVKCPRCRCSVFPNLDLS 285 (382)
Q Consensus 232 ~~C~IC~~~~~~---~~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~~i~~~~~~~ 285 (382)
..|.||.++... |+.-+... |+--.|..|.+-=- +.++.||.|+......+..+
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~ 93 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSP 93 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCC
Confidence 589999999753 23233333 88889999984322 34677999999887555433
No 139
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=47.96 E-value=22 Score=28.90 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 016797 127 IWLLFSYCGL 136 (382)
Q Consensus 127 i~l~~~~~~~ 136 (382)
+|++++++.+
T Consensus 24 FWlv~~liil 33 (102)
T PF11669_consen 24 FWLVWVLIIL 33 (102)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 140
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=47.90 E-value=12 Score=34.15 Aligned_cols=39 Identities=31% Similarity=0.852 Sum_probs=26.5
Q ss_pred cccccccccc-----ccCCCceeeeC-CCCccChhhHHHHHhcCCCCcccC
Q 016797 231 CSECPICLEE-----FHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 275 (382)
Q Consensus 231 ~~~C~IC~~~-----~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR 275 (382)
+..|.+|.+. |.. +.+..-+ |+-+||..|..+ ..||.|.
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 4678888753 121 2344444 999999999752 6799995
No 141
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=47.89 E-value=29 Score=25.02 Aligned_cols=45 Identities=22% Similarity=0.612 Sum_probs=31.2
Q ss_pred ccccccccccCCCceeeeCCCC--ccChhhHHHHHhcCCCCcccCccCCC
Q 016797 233 ECPICLEEFHVGNEVRGLPCAH--NFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H--~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
.|--|-.++..+... ..-|.+ .||.+|.+..+ +..||.|-..+..
T Consensus 7 nCE~C~~dLp~~s~~-A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPE-AYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCc-ceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 577787777654422 222654 69999999876 4689999877643
No 142
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=46.02 E-value=77 Score=26.37 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=13.0
Q ss_pred ccccCCCcchhhHHHHHHHHHH
Q 016797 31 RYHLCTYPLHIWIVVDYTTVFV 52 (382)
Q Consensus 31 ~~~~c~~p~~~Wl~~~~~~~~~ 52 (382)
..+..-+|+++.+++...++++
T Consensus 52 f~~~~p~p~~iffavcI~l~~~ 73 (118)
T PF10856_consen 52 FPQDPPKPLHIFFAVCILLICI 73 (118)
T ss_pred ecCCCCCceEEehHHHHHHHHH
Confidence 3455567778777755444443
No 143
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.62 E-value=29 Score=28.70 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=31.3
Q ss_pred cccccccccccCCC----------ceeee-CCCCccChhhHHHHHhcCCCCcccC
Q 016797 232 SECPICLEEFHVGN----------EVRGL-PCAHNFHIECIDEWLRLNVKCPRCR 275 (382)
Q Consensus 232 ~~C~IC~~~~~~~~----------~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR 275 (382)
..|--|+..|.... ....- .|++.||.+|-.-+-+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999886321 11223 4999999999766666666799995
No 144
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=44.50 E-value=41 Score=29.34 Aligned_cols=47 Identities=21% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCCceehhHHHHHHHHHHHH---HhhhcccccccCCCcchhhHHHHHHHH
Q 016797 4 NESNKVLSGCFLYYYVANRI---IVAINWKRYHLCTYPLHIWIVVDYTTV 50 (382)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~~~~~w~~~~~c~~p~~~Wl~~~~~~~ 50 (382)
.||+...|.=|++.++..++ ..+.+++-....++|+....++.|+..
T Consensus 20 ~e~~~l~d~kL~lg~~a~~iA~~a~~~d~~~~f~~s~~~~~~~v~~YfiL 69 (162)
T PF06703_consen 20 KESHTLTDIKLALGYLAVIIAGFAFFYDYKYPFPESKPYLIICVILYFIL 69 (162)
T ss_pred eeEEEEEcHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHH
Confidence 36788888877777666555 333444557778889999999999875
No 145
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=44.29 E-value=24 Score=39.93 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=36.5
Q ss_pred cccccccccccCCC--ce-eee-CCCCccChhhHHHH-HhcCCCCcccCccCCCCCccc
Q 016797 232 SECPICLEEFHVGN--EV-RGL-PCAHNFHIECIDEW-LRLNVKCPRCRCSVFPNLDLS 285 (382)
Q Consensus 232 ~~C~IC~~~~~~~~--~~-~~l-pC~H~Fh~~Ci~~w-l~~~~~CP~CR~~i~~~~~~~ 285 (382)
..|.||.++...+. ++ +.. .|+--.|+.|.+== -+.++.||.|+......+..+
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsp 76 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSP 76 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCC
Confidence 58999999975432 22 222 37777999998321 234677999999887665444
No 146
>PLN02436 cellulose synthase A
Probab=43.68 E-value=28 Score=39.41 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=36.1
Q ss_pred cccccccccccC---CCceeeeC-CCCccChhhHHHHH-hcCCCCcccCccCCCCCcc
Q 016797 232 SECPICLEEFHV---GNEVRGLP-CAHNFHIECIDEWL-RLNVKCPRCRCSVFPNLDL 284 (382)
Q Consensus 232 ~~C~IC~~~~~~---~~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~~i~~~~~~ 284 (382)
..|.||.++... |+--+... |+--.|..|.+-=- +.++.||.|+......+..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs 94 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGS 94 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCC
Confidence 589999999743 33223333 77789999984322 2466799999987755533
No 147
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=43.31 E-value=14 Score=27.52 Aligned_cols=12 Identities=33% Similarity=1.096 Sum_probs=8.8
Q ss_pred ccChhhHHHHHh
Q 016797 255 NFHIECIDEWLR 266 (382)
Q Consensus 255 ~Fh~~Ci~~wl~ 266 (382)
.||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 148
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=42.91 E-value=13 Score=35.39 Aligned_cols=46 Identities=26% Similarity=0.495 Sum_probs=30.8
Q ss_pred cccccccccccCCCc-eeee---CCCCccChhhHHHHHhc---------CCCCcccCcc
Q 016797 232 SECPICLEEFHVGNE-VRGL---PCAHNFHIECIDEWLRL---------NVKCPRCRCS 277 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~-~~~l---pC~H~Fh~~Ci~~wl~~---------~~~CP~CR~~ 277 (382)
.+|-+|.+.+...+. ...- .|+-.+|..|+..-+.. ...||.|+.-
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 489999999843222 2222 27888999999884321 2359999863
No 149
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=42.72 E-value=15 Score=35.96 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=30.7
Q ss_pred CccccccccccccCCCceeee--C--CCCccChhhHHHHHhcCCCCcccCc
Q 016797 230 DCSECPICLEEFHVGNEVRGL--P--CAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~l--p--C~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
....|++|...-... ...+ . =.|..|..|-..|-..+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 457899998875321 1111 1 1345788888899888889999974
No 150
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=42.13 E-value=14 Score=24.01 Aligned_cols=14 Identities=36% Similarity=0.968 Sum_probs=9.8
Q ss_pred ccccccccccCCCc
Q 016797 233 ECPICLEEFHVGNE 246 (382)
Q Consensus 233 ~C~IC~~~~~~~~~ 246 (382)
.|+-|...|..+++
T Consensus 4 ~CP~C~~~f~v~~~ 17 (37)
T PF13719_consen 4 TCPNCQTRFRVPDD 17 (37)
T ss_pred ECCCCCceEEcCHH
Confidence 58888888776543
No 151
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.87 E-value=8.6 Score=38.54 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=0.0
Q ss_pred eeeCCCCccChhhHHHHHh------cCCCCcccCcc
Q 016797 248 RGLPCAHNFHIECIDEWLR------LNVKCPRCRCS 277 (382)
Q Consensus 248 ~~lpC~H~Fh~~Ci~~wl~------~~~~CP~CR~~ 277 (382)
+-+.|||++... .|-. ...+||+||..
T Consensus 305 VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 305 VYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------
T ss_pred eeccccceeeec---ccccccccccccccCCCcccc
Confidence 457799986543 4532 24569999963
No 152
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=41.65 E-value=3.1 Score=31.41 Aligned_cols=40 Identities=23% Similarity=0.580 Sum_probs=21.9
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
..|+.|..++.... +|..|..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 57999998876211 77788888665 334557999987663
No 153
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.73 E-value=27 Score=32.93 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=35.4
Q ss_pred ccccccccccccCCCc-eeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797 231 CSECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 282 (382)
...|+|-.-+|..... ....+|||+|-..-+.+.- ..+|++|.+.+....
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDD 161 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccC
Confidence 3578887776652222 4556799999999887753 568999998765444
No 154
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=39.87 E-value=29 Score=23.28 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccc
Q 016797 126 LIWLLFSYCGLLCIACMSMGKWLTRRQ 152 (382)
Q Consensus 126 ii~l~~~~~~~i~i~~~~~~~~~~rr~ 152 (382)
++|.+.+..++..++.+...+|..|++
T Consensus 12 lVF~lVglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 12 LVFCLVGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555656666666666667766543
No 155
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=39.72 E-value=1.8e+02 Score=27.42 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=12.1
Q ss_pred ecCCcCCCCCCCeehhhHHHHH
Q 016797 111 SARDCLPEEGQKWGFLIWLLFS 132 (382)
Q Consensus 111 ~~~~~l~~~~~~w~~ii~l~~~ 132 (382)
++....-.+.+.|.+.|++++|
T Consensus 212 sd~f~~y~n~q~wLwwi~~vlG 233 (262)
T KOG4812|consen 212 SDDFESYFNGQYWLWWIFLVLG 233 (262)
T ss_pred ccccccccccchHHHHHHHHHH
Confidence 3333444566676666655555
No 156
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=38.49 E-value=26 Score=34.17 Aligned_cols=51 Identities=25% Similarity=0.553 Sum_probs=33.7
Q ss_pred cccccccccccc-----CCCc-----------eeeeCCCCccChhhHHHHHhc---------CCCCcccCccCCCC
Q 016797 231 CSECPICLEEFH-----VGNE-----------VRGLPCAHNFHIECIDEWLRL---------NVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~-----~~~~-----------~~~lpC~H~Fh~~Ci~~wl~~---------~~~CP~CR~~i~~~ 281 (382)
+.+|++|+..-. .|-+ -.--||||+--+.-..-|-+. +..||.|-..+...
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 468999987521 0111 134589999888888888652 34599997766433
No 157
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=38.46 E-value=23 Score=24.87 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=22.6
Q ss_pred cccccccccccCCCceee-eCCCCccChhhHHHH
Q 016797 232 SECPICLEEFHVGNEVRG-LPCAHNFHIECIDEW 264 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~w 264 (382)
..|.+|...|........ -.||++||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 478999888864333222 249999999997543
No 158
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=37.42 E-value=28 Score=33.91 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=32.0
Q ss_pred cccccccccccCCCceeeeCCCC-ccChhhHHHH-HhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAH-NFHIECIDEW-LRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~w-l~~~~~CP~CR~~i~ 279 (382)
-.|.+|.+.-. -....+|+| +||..|..+- +++...|++|-..+.
T Consensus 137 i~~iqq~tnt~---I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 137 IKRIQQFTNTY---IATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred cchheecccce---EeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 46888877633 444556999 5999997666 566677999976543
No 159
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=37.32 E-value=26 Score=34.11 Aligned_cols=42 Identities=5% Similarity=-0.219 Sum_probs=33.5
Q ss_pred cccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSV 278 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i 278 (382)
.+|-.|-+... .....+|+|. ||.+|.. +....+||.|...+
T Consensus 344 ~~~~~~~~~~~---st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 344 LKGTSAGFGLL---STIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred cccccccCcee---eeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 57999988876 6677789996 9999987 56677899997543
No 160
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK03776 phosphoglycerol transferase I; Provisional
Probab=36.20 E-value=1.7e+02 Score=32.33 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCcchhhHHHHHHHHHHHHHHH
Q 016797 13 CFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLM 57 (382)
Q Consensus 13 ~~~~~~~~~~~~~~~~w~~~~~c~~p~~~Wl~~~~~~~~~~~~~~ 57 (382)
.+++++.+...++..-||.-+. +.|.+....+.++|-+|-
T Consensus 3 ~~~s~~~~~~~~~~~~~k~~~~-----~~~~~~~~~~~~~~~~l~ 42 (762)
T PRK03776 3 ELLSFALFLASVLIYAWKAGRN-----TWWFAATLTVLGLFVVLN 42 (762)
T ss_pred hHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHHHHHH
Confidence 4555555555566688998666 788887776666665444
No 162
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.17 E-value=40 Score=28.36 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=3.8
Q ss_pred hhHHHHHH
Q 016797 126 LIWLLFSY 133 (382)
Q Consensus 126 ii~l~~~~ 133 (382)
++.++||+
T Consensus 66 i~~Ii~gv 73 (122)
T PF01102_consen 66 IIGIIFGV 73 (122)
T ss_dssp HHHHHHHH
T ss_pred eeehhHHH
Confidence 44455554
No 163
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.67 E-value=35 Score=33.77 Aligned_cols=29 Identities=31% Similarity=0.684 Sum_probs=17.7
Q ss_pred hhhhHHHHHHhhhhhhheeeeeeeeE---eEEEe
Q 016797 80 FCGRVVVLSILSLLLYPFLWAWTIIG---TLWFT 110 (382)
Q Consensus 80 ~~~~~~~l~~~~l~~~~f~~~w~i~g---~~w~~ 110 (382)
|..-+++|.| +.++.|.++|.++| =+|++
T Consensus 228 fl~~IlvLaI--vRlILF~I~~il~~g~~g~W~F 259 (372)
T KOG2927|consen 228 FLAFILVLAI--VRLILFGITWILTGGKHGFWLF 259 (372)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCCCceEec
Confidence 4455566666 45556667888776 44554
No 164
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF15345 TMEM51: Transmembrane protein 51
Probab=33.42 E-value=43 Score=31.24 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=17.6
Q ss_pred eehhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 016797 123 WGFLIWLLFSYCGLLCIACMSMGKWLTRRQ 152 (382)
Q Consensus 123 w~~ii~l~~~~~~~i~i~~~~~~~~~~rr~ 152 (382)
-+-+.|+++|.-++++++.+|++.--+||+
T Consensus 57 t~SVAyVLVG~Gv~LLLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 57 TFSVAYVLVGSGVALLLLSICLSIRDKRRR 86 (233)
T ss_pred eEEEEEehhhHHHHHHHHHHHHHHHHHHHH
Confidence 566777777764455666666655444433
No 166
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=33.17 E-value=14 Score=35.47 Aligned_cols=8 Identities=13% Similarity=-0.093 Sum_probs=0.0
Q ss_pred CcccCccC
Q 016797 271 CPRCRCSV 278 (382)
Q Consensus 271 CP~CR~~i 278 (382)
=|.|.+..
T Consensus 234 pP~~SQn~ 241 (381)
T PF05297_consen 234 PPYVSQNG 241 (381)
T ss_dssp --------
T ss_pred CCcccccC
Confidence 36665543
No 167
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=32.73 E-value=29 Score=28.73 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=27.3
Q ss_pred CccccccccccccCC--CceeeeCCCCccChhhHHHHHhcCC--CCcccCc
Q 016797 230 DCSECPICLEEFHVG--NEVRGLPCAHNFHIECIDEWLRLNV--KCPRCRC 276 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~--~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~ 276 (382)
++..|.+|...|..- ....-..|+|.+|..|-.. ..... .|.+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 457899999876432 2334445999999999543 11111 3888864
No 168
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=31.04 E-value=16 Score=36.63 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=0.0
Q ss_pred cccccccccccc-----CCC-----------ceeeeCCCCccChhhHHHHHhc---------CCCCcccCccCCCC
Q 016797 231 CSECPICLEEFH-----VGN-----------EVRGLPCAHNFHIECIDEWLRL---------NVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~-----~~~-----------~~~~lpC~H~Fh~~Ci~~wl~~---------~~~CP~CR~~i~~~ 281 (382)
..+|++|+..-. .|. .-.--||||+--+...+-|-+. +..||.|-..+...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 568999997521 111 1234689999999999999542 34599998777543
No 169
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=30.19 E-value=40 Score=23.46 Aligned_cols=39 Identities=21% Similarity=0.436 Sum_probs=26.7
Q ss_pred cccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 234 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
|..|.+.+..++ .....-+..||..| .+|-.|+.++...
T Consensus 1 C~~C~~~I~~~~-~~~~~~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTE-IVIKAMGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSS-EEEEETTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcE-EEEEeCCcEEEccc--------cccCCCCCccCCC
Confidence 677777776332 22234778899888 4799998877654
No 170
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.20 E-value=10 Score=36.56 Aligned_cols=46 Identities=33% Similarity=0.546 Sum_probs=36.5
Q ss_pred cccccccccccCC---CceeeeC--------CCCccChhhHHHHHhcC-CCCcccCcc
Q 016797 232 SECPICLEEFHVG---NEVRGLP--------CAHNFHIECIDEWLRLN-VKCPRCRCS 277 (382)
Q Consensus 232 ~~C~IC~~~~~~~---~~~~~lp--------C~H~Fh~~Ci~~wl~~~-~~CP~CR~~ 277 (382)
..|.||...+... ..+..+. |||.-|..|+..-+... ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 5799999998743 3466677 99999999999987643 579999864
No 171
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=28.81 E-value=28 Score=23.77 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=26.4
Q ss_pred ccccccccccCCCceeeeCCCCccChhhHHHHHh------cCCCCcccC
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR------LNVKCPRCR 275 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~------~~~~CP~CR 275 (382)
.|.||...-..++-+.--.|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3888988433222233334888999999765432 133588885
No 172
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=28.34 E-value=3e+02 Score=22.75 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccCCCcchhhHHHHHHH-HHHHHHHHhh
Q 016797 10 LSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTT-VFVFRLLMFV 59 (382)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~w~~~~~c~~p~~~Wl~~~~~~-~~~~~~~~~~ 59 (382)
+.||.|+.++|.+-++.+.=+ ..| .-..++++..++. |++..+++|.
T Consensus 21 ~iGFvLsIiLT~ipF~~vm~~--~~~-~~~~~~~i~~lA~iQi~vqLvyFl 68 (111)
T COG3125 21 LIGFVLSIILTLIPFWVVMTG--ALS-STVTLIIILGLAVIQILVHLVYFL 68 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ccc-hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 568888888888887777333 333 5678888888866 6999999995
No 173
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=28.06 E-value=1.3e+02 Score=24.84 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=36.3
Q ss_pred ehhHHHHHHHHHHHHHhhhcccccccCCCcchhhHHHHHHH-HHHHHHHHhh
Q 016797 9 VLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTT-VFVFRLLMFV 59 (382)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~w~~~~~c~~p~~~Wl~~~~~~-~~~~~~~~~~ 59 (382)
-+-||.++.++|.+-+.++.++.. +....+++++..+. |.+..+.+|+
T Consensus 28 yviGFiLSiiLT~I~F~~V~~~~l---~~~~~~~~I~~lAvvQi~VqL~yFL 76 (110)
T TIGR02908 28 QIVTFALMIFLTLIAFFAVMLDEI---DKWFVIPFILLLAAVQVAFQLYYFM 76 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC---ChhHHHHHHHHHHHHHHHHHHHHhe
Confidence 456888888889888888866633 55677888877755 6888888884
No 174
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=27.43 E-value=33 Score=22.21 Aligned_cols=14 Identities=29% Similarity=0.994 Sum_probs=9.6
Q ss_pred ccccccccccCCCc
Q 016797 233 ECPICLEEFHVGNE 246 (382)
Q Consensus 233 ~C~IC~~~~~~~~~ 246 (382)
+|+-|...|..+++
T Consensus 4 ~Cp~C~~~y~i~d~ 17 (36)
T PF13717_consen 4 TCPNCQAKYEIDDE 17 (36)
T ss_pred ECCCCCCEEeCCHH
Confidence 57888877765543
No 175
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=27.39 E-value=1.3e+02 Score=29.66 Aligned_cols=36 Identities=17% Similarity=0.411 Sum_probs=19.3
Q ss_pred eeeCCCCccChh-hHHH--HHhcCCCCcccCccCCCCCc
Q 016797 248 RGLPCAHNFHIE-CIDE--WLRLNVKCPRCRCSVFPNLD 283 (382)
Q Consensus 248 ~~lpC~H~Fh~~-Ci~~--wl~~~~~CP~CR~~i~~~~~ 283 (382)
..|=|+|.+|.. |... .-.....||.|+.-..+.+.
T Consensus 219 yALIC~~C~~HNGla~~ee~~yi~F~C~~Cn~LN~~~k~ 257 (328)
T KOG2846|consen 219 YALICSQCHHHNGLARKEEYEYITFRCPHCNALNPAKKS 257 (328)
T ss_pred hhhcchhhccccCcCChhhcCceEEECccccccCCCcCC
Confidence 345577765443 4333 01123359999876655544
No 176
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=27.08 E-value=36 Score=24.02 Aligned_cols=22 Identities=32% Similarity=0.761 Sum_probs=11.9
Q ss_pred CCCccChhhHHHHHhcCCCCccc
Q 016797 252 CAHNFHIECIDEWLRLNVKCPRC 274 (382)
Q Consensus 252 C~H~Fh~~Ci~~wl~~~~~CP~C 274 (382)
|||.|-..=-.+- .....||.|
T Consensus 34 Cgh~w~~~v~~R~-~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDRT-RRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhhc-cCCCCCCCC
Confidence 5665544332222 455679988
No 177
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=26.95 E-value=71 Score=36.28 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=35.2
Q ss_pred ccccccccccccCCC--ce-eee-CCCCccChhhHHHHH-hcCCCCcccCccCCCCC
Q 016797 231 CSECPICLEEFHVGN--EV-RGL-PCAHNFHIECIDEWL-RLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~--~~-~~l-pC~H~Fh~~Ci~~wl-~~~~~CP~CR~~i~~~~ 282 (382)
...|.||.++...+. ++ +.. .|+--.|..|.+-=- +.++.||.|+......+
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 358999999975432 22 222 377779999984322 34677999999877554
No 178
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=25.90 E-value=1.1e+02 Score=26.60 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=19.9
Q ss_pred cCCcCCCCCCCeehh---hHHHHHHHHHHHHHHHHhhhhhccccc
Q 016797 112 ARDCLPEEGQKWGFL---IWLLFSYCGLLCIACMSMGKWLTRRQA 153 (382)
Q Consensus 112 ~~~~l~~~~~~w~~i---i~l~~~~~~~i~i~~~~~~~~~~rr~~ 153 (382)
-..||....++-||- +.+++++++++ +.++++.+|..+|.+
T Consensus 14 y~ecls~~~~psffsthm~tILiaIvVli-iiiivli~lcssRKk 57 (189)
T PF05568_consen 14 YGECLSPVTPPSFFSTHMYTILIAIVVLI-IIIIVLIYLCSSRKK 57 (189)
T ss_pred hhhhcCCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhH
Confidence 446888877774443 22333433333 333334444444433
No 179
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.88 E-value=35 Score=29.83 Aligned_cols=47 Identities=19% Similarity=0.486 Sum_probs=30.8
Q ss_pred ccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCcccCccCCCCCcc
Q 016797 235 PICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDL 284 (382)
Q Consensus 235 ~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~~ 284 (382)
.||+..-...+....-| =.+.||..|-.+-.. .||.|..+|...-..
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGDYHV 55 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCceec
Confidence 46766644333333333 356799999877655 599999998765433
No 180
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=25.07 E-value=97 Score=21.03 Aligned_cols=22 Identities=18% Similarity=0.582 Sum_probs=10.5
Q ss_pred eehhhHHHHHHHHHHHHHHHHh
Q 016797 123 WGFLIWLLFSYCGLLCIACMSM 144 (382)
Q Consensus 123 w~~ii~l~~~~~~~i~i~~~~~ 144 (382)
+.+.+|..+++..+++...+..
T Consensus 4 y~~yVW~sYg~t~l~l~~li~~ 25 (45)
T TIGR03141 4 YAFYVWLAYGITALVLAGLILW 25 (45)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666544433333333
No 181
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=24.66 E-value=44 Score=31.62 Aligned_cols=26 Identities=23% Similarity=0.608 Sum_probs=19.9
Q ss_pred cccccccccccCCCceeeeCCCCccC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFH 257 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh 257 (382)
..|++|.+.+...+.....+++|.|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCc
Confidence 47999999997666655666788883
No 182
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.06 E-value=44 Score=28.26 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=17.6
Q ss_pred ccccccccccCCCceeeeCCCCccChh
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHNFHIE 259 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~ 259 (382)
.=-||.+.-+ .+....|||.||..
T Consensus 59 hlfi~qs~~~---rv~rcecghsf~d~ 82 (165)
T COG4647 59 HLFICQSAQK---RVIRCECGHSFGDY 82 (165)
T ss_pred cEEEEecccc---cEEEEeccccccCh
Confidence 3457776644 67888899999974
No 183
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.64 E-value=54 Score=35.39 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=32.1
Q ss_pred ccccccccccCCCceeeeCCCC-ccChhhHHHHHh--c----CCCCcccCccCC
Q 016797 233 ECPICLEEFHVGNEVRGLPCAH-NFHIECIDEWLR--L----NVKCPRCRCSVF 279 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~--~----~~~CP~CR~~i~ 279 (382)
.|+||-.... -...=.||| ..|..|..+... . ...||+||..+.
T Consensus 2 ~c~ic~~s~~---~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPD---FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCcc---ccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999988775 444556999 799999877643 2 345899998654
No 184
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=22.32 E-value=95 Score=21.41 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=14.0
Q ss_pred eehhhHHHHHHHHHHHHHHHH
Q 016797 123 WGFLIWLLFSYCGLLCIACMS 143 (382)
Q Consensus 123 w~~ii~l~~~~~~~i~i~~~~ 143 (382)
|.+++++++|.+.++.++.++
T Consensus 2 Wl~V~~iilg~~ll~~LigiC 22 (49)
T PF05624_consen 2 WLFVVLIILGALLLLLLIGIC 22 (49)
T ss_pred eEEEeHHHHHHHHHHHHHHHH
Confidence 778888888866655554443
No 185
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=22.14 E-value=1.9e+02 Score=27.72 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=40.4
Q ss_pred ehhHHHHHHHHHHHHHhhhcccccccCCCcchhhHHHHHHHHHHHHHHHhhhcccccccC
Q 016797 9 VLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMG 68 (382)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~w~~~~~c~~p~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (382)
.+-+++.++++...++++..+-++.+--.|+|.|+.+..++-.+--+..+.+....+..|
T Consensus 49 ~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~~G 108 (295)
T PF06814_consen 49 PFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIHYLILAVLILKMLELAFWFIYYHYINKTG 108 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344566677777777888888777777889999999776665555555555444444444
No 186
>PF15102 TMEM154: TMEM154 protein family
Probab=22.01 E-value=65 Score=27.91 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhhhccccchhhhhhc
Q 016797 134 CGLLCIACMSMGKWLTRRQAHSIRAQQ 160 (382)
Q Consensus 134 ~~~i~i~~~~~~~~~~rr~~~~~~~~~ 160 (382)
+++++++.++++.+.+|++......++
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K~~~ss~ 94 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTKQEPSSQ 94 (146)
T ss_pred HHHHHHHHHHheeEEeecccCCCCccc
Confidence 344444445555555444443333333
No 187
>KOG4564 consensus Adenylate cyclase-coupled calcitonin receptor [Signal transduction mechanisms]
Probab=21.89 E-value=63 Score=33.55 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=22.8
Q ss_pred ccccCCCc-chhhHHHHHHHHHHHHHHHh
Q 016797 31 RYHLCTYP-LHIWIVVDYTTVFVFRLLMF 58 (382)
Q Consensus 31 ~~~~c~~p-~~~Wl~~~~~~~~~~~~~~~ 58 (382)
|...|... ||+=|.++|++-.+.+++..
T Consensus 173 R~L~CtRn~IH~nLF~SfiLra~~~~i~~ 201 (473)
T KOG4564|consen 173 RSLHCTRNYIHMNLFASFILRAASVLIKD 201 (473)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888877 99999999988877776665
No 188
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=21.85 E-value=49 Score=30.30 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=26.0
Q ss_pred eEeEEEeecCCcCCCCCCCeehhhHHHHHHHH--HHHHHHHHhhhhhccccch
Q 016797 104 IGTLWFTSARDCLPEEGQKWGFLIWLLFSYCG--LLCIACMSMGKWLTRRQAH 154 (382)
Q Consensus 104 ~g~~w~~~~~~~l~~~~~~w~~ii~l~~~~~~--~i~i~~~~~~~~~~rr~~~ 154 (382)
+|+-=|.....|.++...+- +.+++++...| +++++.+..+|++..|+..
T Consensus 79 ~GIq~~s~~~~~~~~~~~~r-~~~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 79 LGIQNFSEGDSCSHQSSSDR-YPTLIALVTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred cCCcccccccccCCCCcCcc-ceEEEehHHhhHHHHHHHHHHHHHHhhhhccC
Confidence 45555666777777766654 22333333344 3444444445555555544
No 189
>PLN02195 cellulose synthase A
Probab=20.94 E-value=1.1e+02 Score=34.51 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=34.0
Q ss_pred ccccccccccccCCC--ce-e-eeCCCCccChhhHHHH-HhcCCCCcccCccCCC
Q 016797 231 CSECPICLEEFHVGN--EV-R-GLPCAHNFHIECIDEW-LRLNVKCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~--~~-~-~lpC~H~Fh~~Ci~~w-l~~~~~CP~CR~~i~~ 280 (382)
...|.||.+....+. ++ + .-.|+--.|+.|.+== -+.++.||.|+.....
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 458999999875432 22 2 2338888999998322 1246679999988763
No 190
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=20.42 E-value=4.7e+02 Score=21.45 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=33.9
Q ss_pred ehhHHHHHHHHHHHHHhhhcccccccCCCcchhhHHHHHHH-HHHHHHHHhh
Q 016797 9 VLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTT-VFVFRLLMFV 59 (382)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~w~~~~~c~~p~~~Wl~~~~~~-~~~~~~~~~~ 59 (382)
-+-||.++.++|.+-+.++.++.. +.+..+++++..+. |.+..+.+|+
T Consensus 18 yviGFiLSliLT~i~F~lv~~~~~---~~~~~~~~i~~lA~vQi~VqL~~FL 66 (109)
T PRK10582 18 YMTGFILSIILTVIPFWMVMTGAA---SPAVILGTILAMAVVQILVHLVCFL 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC---ChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 456888899999888888866532 44456666655544 6888888885
No 191
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.16 E-value=94 Score=24.90 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=28.2
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHh
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR 266 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~ 266 (382)
-.|.||-..+..|+.-.-++ .-..|.+|+..=..
T Consensus 7 wkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 57999999999998888887 55689999877544
Done!