Query 016797
Match_columns 382
No_of_seqs 426 out of 2121
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 03:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 7.7E-15 2.6E-19 116.1 3.9 71 210-280 16-89 (91)
2 1x4j_A Ring finger protein 38; 99.5 2.8E-14 9.5E-19 108.6 4.1 65 217-281 7-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.4 1.2E-13 4E-18 98.4 4.2 50 230-279 4-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.4 2.9E-13 1E-17 101.0 5.9 53 229-281 12-64 (69)
5 2ect_A Ring finger protein 126 99.4 2.9E-13 1E-17 103.5 5.5 54 229-282 13-66 (78)
6 2ep4_A Ring finger protein 24; 99.4 3.2E-13 1.1E-17 102.2 5.5 52 230-281 14-65 (74)
7 2ecm_A Ring finger and CHY zin 99.3 1.9E-12 6.4E-17 92.1 4.6 50 230-279 4-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.3 1.7E-12 5.8E-17 100.4 4.3 49 231-279 15-75 (81)
9 3ng2_A RNF4, snurf, ring finge 99.3 2.2E-12 7.6E-17 96.5 4.0 53 229-281 8-64 (71)
10 2ea6_A Ring finger protein 4; 99.3 2.6E-12 9E-17 95.4 4.0 51 229-279 13-67 (69)
11 2djb_A Polycomb group ring fin 99.2 5E-12 1.7E-16 95.2 5.2 50 230-282 14-64 (72)
12 2d8t_A Dactylidin, ring finger 99.2 3.5E-12 1.2E-16 95.8 4.2 49 229-280 13-61 (71)
13 1v87_A Deltex protein 2; ring- 99.2 1.1E-11 3.9E-16 101.6 6.7 51 231-281 25-95 (114)
14 2xeu_A Ring finger protein 4; 99.2 4.6E-12 1.6E-16 92.7 3.5 51 231-281 3-57 (64)
15 2ecn_A Ring finger protein 141 99.2 5E-12 1.7E-16 94.5 3.0 49 230-282 14-62 (70)
16 1chc_A Equine herpes virus-1 r 99.2 7.8E-12 2.7E-16 92.9 3.9 48 230-279 4-51 (68)
17 2ysl_A Tripartite motif-contai 99.2 1.4E-11 5E-16 92.6 5.3 50 229-281 18-70 (73)
18 2ct2_A Tripartite motif protei 99.2 2.4E-11 8.2E-16 94.7 6.7 53 229-281 13-69 (88)
19 2ecy_A TNF receptor-associated 99.2 1.3E-11 4.3E-16 91.3 4.6 50 229-281 13-63 (66)
20 3dpl_R Ring-box protein 1; ubi 99.2 1.3E-11 4.4E-16 100.3 4.9 50 230-279 36-100 (106)
21 2csy_A Zinc finger protein 183 99.2 1.3E-11 4.6E-16 95.0 4.4 47 230-279 14-60 (81)
22 4ayc_A E3 ubiquitin-protein li 99.2 9.5E-12 3.3E-16 105.8 3.4 47 231-280 53-99 (138)
23 2yur_A Retinoblastoma-binding 99.2 1.9E-11 6.7E-16 92.6 4.6 48 230-280 14-64 (74)
24 1t1h_A Gspef-atpub14, armadill 99.2 2.7E-11 9.3E-16 92.5 5.2 49 230-281 7-56 (78)
25 2d8s_A Cellular modulator of i 99.1 4.2E-11 1.4E-15 92.3 4.8 54 228-282 12-72 (80)
26 2ysj_A Tripartite motif-contai 99.1 6.7E-11 2.3E-15 86.5 5.1 43 229-274 18-63 (63)
27 2egp_A Tripartite motif-contai 99.1 2.3E-11 7.9E-16 92.9 2.4 49 229-280 10-65 (79)
28 2ecw_A Tripartite motif-contai 99.1 7.8E-11 2.7E-15 90.9 5.3 49 230-281 18-72 (85)
29 2ecv_A Tripartite motif-contai 99.1 8.1E-11 2.8E-15 90.8 5.3 48 230-280 18-71 (85)
30 3lrq_A E3 ubiquitin-protein li 99.1 3.4E-11 1.1E-15 96.7 2.8 46 232-280 23-70 (100)
31 3ztg_A E3 ubiquitin-protein li 99.1 9.1E-11 3.1E-15 92.4 5.2 48 229-279 11-61 (92)
32 2ckl_A Polycomb group ring fin 99.1 1E-10 3.5E-15 95.0 4.7 48 231-281 15-63 (108)
33 3fl2_A E3 ubiquitin-protein li 99.0 8.6E-11 3E-15 97.9 4.0 47 231-280 52-99 (124)
34 2y43_A E3 ubiquitin-protein li 99.0 7E-11 2.4E-15 94.5 3.3 46 232-280 23-69 (99)
35 4a0k_B E3 ubiquitin-protein li 99.0 2.6E-11 8.7E-16 100.1 0.5 50 230-279 47-111 (117)
36 2ecj_A Tripartite motif-contai 99.0 1.5E-10 5E-15 83.0 4.0 42 230-274 14-58 (58)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 1.5E-10 5.1E-15 96.8 4.4 53 230-282 6-62 (133)
38 1g25_A CDK-activating kinase a 99.0 1.9E-10 6.4E-15 84.7 3.7 51 231-281 3-56 (65)
39 3l11_A E3 ubiquitin-protein li 99.0 8.5E-11 2.9E-15 96.6 0.8 46 231-279 15-61 (115)
40 1jm7_A BRCA1, breast cancer ty 99.0 3.6E-10 1.2E-14 92.0 4.4 47 232-281 22-71 (112)
41 1z6u_A NP95-like ring finger p 98.9 3.7E-10 1.3E-14 97.4 4.1 48 231-281 78-126 (150)
42 2ct0_A Non-SMC element 1 homol 98.9 6.5E-10 2.2E-14 84.1 4.8 49 230-280 14-64 (74)
43 1bor_A Transcription factor PM 98.9 2.6E-10 8.7E-15 81.6 2.3 47 229-281 4-50 (56)
44 3hct_A TNF receptor-associated 98.9 4E-10 1.4E-14 93.1 3.5 50 229-281 16-66 (118)
45 2ckl_B Ubiquitin ligase protei 98.9 4.7E-10 1.6E-14 98.1 4.0 48 231-281 54-103 (165)
46 2kr4_A Ubiquitin conjugation f 98.9 4.7E-10 1.6E-14 87.3 3.5 47 231-280 14-60 (85)
47 2kre_A Ubiquitin conjugation f 98.9 6.1E-10 2.1E-14 89.4 4.2 49 230-281 28-76 (100)
48 4ap4_A E3 ubiquitin ligase RNF 98.9 3.9E-10 1.3E-14 94.2 2.8 53 229-281 70-126 (133)
49 2vje_A E3 ubiquitin-protein li 98.9 5.7E-10 1.9E-14 82.1 3.2 47 230-279 7-56 (64)
50 1wgm_A Ubiquitin conjugation f 98.9 1.1E-09 3.7E-14 87.6 4.4 48 231-281 22-70 (98)
51 1rmd_A RAG1; V(D)J recombinati 98.9 7.9E-10 2.7E-14 90.9 3.0 46 232-280 24-70 (116)
52 2vje_B MDM4 protein; proto-onc 98.9 9.7E-10 3.3E-14 80.6 3.0 47 230-279 6-55 (63)
53 1e4u_A Transcriptional repress 98.8 3.3E-09 1.1E-13 81.2 5.6 52 229-281 9-63 (78)
54 3knv_A TNF receptor-associated 98.8 1E-09 3.6E-14 93.6 2.8 50 228-280 28-78 (141)
55 2y1n_A E3 ubiquitin-protein li 98.8 1.8E-09 6E-14 106.1 4.8 48 231-281 332-380 (389)
56 1jm7_B BARD1, BRCA1-associated 98.8 4E-09 1.4E-13 86.9 5.2 44 232-280 23-67 (117)
57 2c2l_A CHIP, carboxy terminus 98.8 4.7E-09 1.6E-13 98.6 6.3 49 229-280 206-255 (281)
58 4ic3_A E3 ubiquitin-protein li 98.8 1.6E-09 5.6E-14 82.0 2.1 42 232-280 25-67 (74)
59 2f42_A STIP1 homology and U-bo 98.7 1.3E-08 4.3E-13 90.0 5.1 49 229-280 104-153 (179)
60 2ea5_A Cell growth regulator w 98.7 1.3E-08 4.6E-13 75.7 4.3 48 227-281 11-59 (68)
61 2yu4_A E3 SUMO-protein ligase 98.6 1.1E-08 3.7E-13 81.0 2.7 45 230-277 6-59 (94)
62 3hcs_A TNF receptor-associated 98.6 1.3E-08 4.5E-13 89.2 3.3 50 229-281 16-66 (170)
63 2ecg_A Baculoviral IAP repeat- 98.6 2.2E-08 7.5E-13 75.8 3.4 42 232-280 26-68 (75)
64 2yho_A E3 ubiquitin-protein li 98.5 2.4E-08 8E-13 76.6 1.5 42 232-280 19-61 (79)
65 3k1l_B Fancl; UBC, ring, RWD, 98.5 2.8E-08 9.7E-13 95.1 2.3 51 229-279 306-372 (381)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.3 4.1E-07 1.4E-11 65.8 4.0 48 229-279 4-58 (60)
67 2bay_A PRE-mRNA splicing facto 98.3 1.9E-07 6.5E-12 67.9 2.2 47 232-281 4-51 (61)
68 3t6p_A Baculoviral IAP repeat- 98.3 1.5E-07 5.1E-12 91.6 2.1 43 231-280 295-338 (345)
69 1wim_A KIAA0161 protein; ring 98.3 2.9E-07 1E-11 72.6 2.8 47 231-277 5-61 (94)
70 3htk_C E3 SUMO-protein ligase 98.2 4.9E-07 1.7E-11 83.9 3.1 47 231-280 181-232 (267)
71 3vk6_A E3 ubiquitin-protein li 97.9 5.9E-06 2E-10 65.1 3.6 46 233-280 3-49 (101)
72 3nw0_A Non-structural maintena 97.4 7.4E-05 2.5E-09 68.9 4.0 48 231-280 180-229 (238)
73 2ko5_A Ring finger protein Z; 94.1 0.05 1.7E-06 42.1 4.1 49 232-285 29-78 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 91.7 0.081 2.8E-06 41.3 2.4 32 231-264 3-36 (101)
75 2lri_C Autoimmune regulator; Z 90.8 0.19 6.4E-06 36.5 3.4 46 230-278 11-60 (66)
76 1wil_A KIAA1045 protein; ring 85.4 0.74 2.5E-05 34.8 3.6 31 230-264 14-47 (89)
77 2k16_A Transcription initiatio 81.8 0.35 1.2E-05 35.7 0.6 53 226-279 13-70 (75)
78 1we9_A PHD finger family prote 80.6 0.46 1.6E-05 33.9 0.8 49 229-277 4-58 (64)
79 3m62_A Ubiquitin conjugation f 78.7 2.2 7.6E-05 46.2 5.6 49 230-281 890-939 (968)
80 1f62_A Transcription factor WS 77.6 1.1 3.8E-05 30.2 2.0 44 233-276 2-49 (51)
81 1mm2_A MI2-beta; PHD, zinc fin 76.9 0.85 2.9E-05 32.3 1.3 47 229-278 7-57 (61)
82 2l5u_A Chromodomain-helicase-D 75.8 1.3 4.4E-05 31.3 2.0 43 230-276 10-57 (61)
83 3o36_A Transcription intermedi 73.7 2.4 8.2E-05 36.7 3.6 46 230-278 3-52 (184)
84 1zbd_B Rabphilin-3A; G protein 73.6 2.2 7.6E-05 35.3 3.1 49 228-276 52-106 (134)
85 2yql_A PHD finger protein 21A; 73.3 0.58 2E-05 32.5 -0.4 46 228-276 6-55 (56)
86 1fp0_A KAP-1 corepressor; PHD 72.9 2.2 7.7E-05 32.6 2.8 47 228-277 22-72 (88)
87 3u5n_A E3 ubiquitin-protein li 72.2 1 3.4E-05 40.0 0.8 46 229-278 5-55 (207)
88 3lqh_A Histone-lysine N-methyl 72.1 1.3 4.4E-05 38.7 1.4 48 232-279 3-65 (183)
89 1weo_A Cellulose synthase, cat 72.0 16 0.00054 27.9 7.2 55 231-285 16-75 (93)
90 2cs3_A Protein C14ORF4, MY039 68.2 4.1 0.00014 30.5 3.2 36 231-267 15-52 (93)
91 1xwh_A Autoimmune regulator; P 65.2 1.2 4E-05 32.0 -0.3 45 229-276 6-54 (66)
92 2ysm_A Myeloid/lymphoid or mix 63.7 2.5 8.5E-05 33.4 1.4 47 229-275 5-55 (111)
93 2puy_A PHD finger protein 21A; 60.1 2.1 7.3E-05 29.9 0.3 45 230-277 4-52 (60)
94 3v43_A Histone acetyltransfera 58.2 3.2 0.00011 33.0 1.1 45 232-276 62-111 (112)
95 2ro1_A Transcription intermedi 58.0 2.6 8.8E-05 36.9 0.5 44 231-277 2-49 (189)
96 1z2q_A LM5-1; membrane protein 57.5 6.9 0.00023 29.3 2.8 33 231-263 21-54 (84)
97 1y02_A CARP2, FYVE-ring finger 57.4 1.8 6.1E-05 35.1 -0.5 45 232-276 20-65 (120)
98 2e6r_A Jumonji/ARID domain-con 56.5 2 7E-05 33.0 -0.3 47 230-277 15-66 (92)
99 4gne_A Histone-lysine N-methyl 56.1 10 0.00035 29.9 3.8 49 227-281 11-66 (107)
100 2yt5_A Metal-response element- 55.7 2.3 8E-05 30.2 -0.1 50 229-278 4-62 (66)
101 2yw8_A RUN and FYVE domain-con 55.3 7.3 0.00025 29.0 2.7 33 231-263 19-52 (82)
102 1joc_A EEA1, early endosomal a 55.1 6.2 0.00021 32.0 2.4 33 231-263 69-102 (125)
103 1wep_A PHF8; structural genomi 54.3 9.8 0.00034 28.0 3.2 46 232-278 13-64 (79)
104 3t7l_A Zinc finger FYVE domain 54.2 6.9 0.00024 29.8 2.4 34 231-264 20-54 (90)
105 1vfy_A Phosphatidylinositol-3- 53.0 8.7 0.0003 27.9 2.7 31 232-262 12-43 (73)
106 1x4u_A Zinc finger, FYVE domai 51.4 8.9 0.00031 28.6 2.6 31 231-261 14-45 (84)
107 1wfk_A Zinc finger, FYVE domai 51.2 9.7 0.00033 28.8 2.8 34 230-263 8-42 (88)
108 2ku3_A Bromodomain-containing 51.1 5.5 0.00019 29.0 1.3 48 229-276 14-65 (71)
109 1wen_A Inhibitor of growth fam 50.8 13 0.00043 27.0 3.2 44 231-278 16-66 (71)
110 2lbm_A Transcriptional regulat 50.7 15 0.00053 30.4 4.1 46 228-276 60-116 (142)
111 2fiy_A Protein FDHE homolog; F 50.0 6.3 0.00021 37.2 1.8 63 212-277 164-231 (309)
112 2ri7_A Nucleosome-remodeling f 49.8 3.9 0.00013 34.9 0.3 45 231-276 8-58 (174)
113 1dvp_A HRS, hepatocyte growth 49.4 7.6 0.00026 34.5 2.2 33 231-263 161-194 (220)
114 1weu_A Inhibitor of growth fam 49.2 12 0.00041 28.6 3.0 44 231-278 36-86 (91)
115 1wem_A Death associated transc 48.5 7.4 0.00025 28.4 1.7 45 232-278 17-71 (76)
116 2lv9_A Histone-lysine N-methyl 48.5 6.6 0.00023 30.4 1.5 44 232-276 29-75 (98)
117 2kgg_A Histone demethylase jar 48.5 6.3 0.00022 26.6 1.2 43 233-275 4-52 (52)
118 3zyq_A Hepatocyte growth facto 48.2 8.3 0.00028 34.5 2.3 33 231-263 164-197 (226)
119 1z60_A TFIIH basal transcripti 48.2 8 0.00027 27.2 1.7 42 232-274 16-58 (59)
120 2l43_A N-teminal domain from h 47.2 6.6 0.00023 29.8 1.3 50 229-278 23-76 (88)
121 3v43_A Histone acetyltransfera 45.4 23 0.00079 27.8 4.3 32 231-262 5-42 (112)
122 2vpb_A Hpygo1, pygopus homolog 44.4 14 0.00049 26.2 2.6 33 230-262 7-41 (65)
123 3ask_A E3 ubiquitin-protein li 42.8 6.6 0.00023 35.3 0.7 43 233-276 176-224 (226)
124 3ql9_A Transcriptional regulat 42.6 23 0.00078 28.9 3.9 45 228-276 54-110 (129)
125 3kv5_D JMJC domain-containing 40.8 6.4 0.00022 39.6 0.3 45 233-277 38-88 (488)
126 3shb_A E3 ubiquitin-protein li 40.5 4.5 0.00015 30.0 -0.7 41 233-276 28-76 (77)
127 1wee_A PHD finger family prote 39.8 5.2 0.00018 29.0 -0.4 46 231-277 16-66 (72)
128 2gmg_A Hypothetical protein PF 39.7 5.9 0.0002 31.2 -0.1 27 247-278 68-94 (105)
129 2e6s_A E3 ubiquitin-protein li 38.8 7 0.00024 28.9 0.2 43 233-276 28-76 (77)
130 3asl_A E3 ubiquitin-protein li 37.9 6.7 0.00023 28.4 -0.0 43 233-276 20-68 (70)
131 3mpx_A FYVE, rhogef and PH dom 37.2 7.1 0.00024 38.0 0.0 35 231-265 375-410 (434)
132 1wew_A DNA-binding family prot 37.1 14 0.00048 27.1 1.7 47 231-278 16-73 (78)
133 3i2d_A E3 SUMO-protein ligase 37.0 27 0.00091 33.7 4.0 47 232-280 250-300 (371)
134 4fo9_A E3 SUMO-protein ligase 35.1 30 0.001 33.2 4.0 47 232-280 216-266 (360)
135 2o35_A Hypothetical protein DU 34.7 15 0.0005 28.6 1.4 12 255-266 42-53 (105)
136 3fyb_A Protein of unknown func 34.6 15 0.00051 28.5 1.4 12 255-266 41-52 (104)
137 3o70_A PHD finger protein 13; 33.5 9.9 0.00034 27.3 0.3 44 231-276 19-66 (68)
138 2cu8_A Cysteine-rich protein 2 32.9 26 0.0009 24.9 2.6 39 232-280 10-48 (76)
139 2xb1_A Pygopus homolog 2, B-ce 32.5 19 0.00065 28.1 1.8 47 232-278 4-62 (105)
140 1iml_A CRIP, cysteine rich int 32.1 19 0.00067 25.6 1.7 37 233-279 2-38 (76)
141 2dar_A PDZ and LIM domain prot 31.3 31 0.0011 25.5 2.8 39 231-280 25-63 (90)
142 2vnf_A ING 4, P29ING4, inhibit 30.7 9.9 0.00034 26.5 -0.1 40 232-276 11-58 (60)
143 2cor_A Pinch protein; LIM doma 30.6 45 0.0016 24.0 3.6 40 231-281 15-54 (79)
144 3c6w_A P28ING5, inhibitor of g 30.4 11 0.00036 26.4 -0.0 40 232-276 10-57 (59)
145 1wev_A Riken cDNA 1110020M19; 29.2 10 0.00035 28.7 -0.3 48 231-278 16-73 (88)
146 2ysm_A Myeloid/lymphoid or mix 29.0 9.3 0.00032 30.0 -0.6 43 233-276 56-103 (111)
147 2dj7_A Actin-binding LIM prote 28.4 48 0.0016 24.0 3.4 39 231-279 15-53 (80)
148 1x64_A Alpha-actinin-2 associa 27.5 53 0.0018 24.1 3.6 39 231-280 25-63 (89)
149 1x62_A C-terminal LIM domain p 27.4 32 0.0011 24.7 2.2 37 231-278 15-51 (79)
150 1x4l_A Skeletal muscle LIM-pro 27.1 64 0.0022 22.4 3.8 40 232-279 6-46 (72)
151 2co8_A NEDD9 interacting prote 26.7 77 0.0026 22.9 4.3 40 231-280 15-54 (82)
152 2klu_A T-cell surface glycopro 26.4 79 0.0027 22.6 3.9 17 123-139 7-23 (70)
153 2d8v_A Zinc finger FYVE domain 25.9 42 0.0015 24.0 2.4 30 231-264 8-38 (67)
154 2d8x_A Protein pinch; LIM doma 25.6 44 0.0015 23.2 2.6 39 232-281 6-44 (70)
155 1x63_A Skeletal muscle LIM-pro 25.6 53 0.0018 23.5 3.2 40 232-280 16-55 (82)
156 2d8z_A Four and A half LIM dom 25.5 49 0.0017 22.9 2.9 37 232-279 6-42 (70)
157 1zfo_A LAsp-1; LIM domain, zin 25.4 28 0.00097 20.7 1.3 27 232-260 4-30 (31)
158 1wyh_A SLIM 2, skeletal muscle 25.2 51 0.0017 22.9 3.0 40 232-280 6-45 (72)
159 1nyp_A Pinch protein; LIM doma 24.5 44 0.0015 22.9 2.4 38 232-280 6-43 (66)
160 2zet_C Melanophilin; complex, 24.3 39 0.0013 28.3 2.4 46 230-276 67-116 (153)
161 1x61_A Thyroid receptor intera 23.6 68 0.0023 22.2 3.4 39 232-279 6-44 (72)
162 1x68_A FHL5 protein; four-and- 23.0 48 0.0016 23.5 2.4 40 232-279 6-46 (76)
163 2kwj_A Zinc finger protein DPF 22.6 12 0.0004 29.7 -1.1 46 232-277 59-108 (114)
164 2l3k_A Rhombotin-2, linker, LI 22.4 46 0.0016 26.2 2.5 37 233-278 10-46 (123)
165 1x4k_A Skeletal muscle LIM-pro 22.1 61 0.0021 22.4 2.8 40 232-280 6-45 (72)
166 1g47_A Pinch protein; LIM doma 21.9 80 0.0027 22.1 3.5 41 231-280 11-51 (77)
167 1wig_A KIAA1808 protein; LIM d 21.7 48 0.0016 23.4 2.2 37 232-279 6-42 (73)
168 2jmo_A Parkin; IBR, E3 ligase, 21.2 8.6 0.0003 28.5 -2.1 15 251-265 55-69 (80)
169 1m3v_A FLIN4, fusion of the LI 20.4 76 0.0026 24.8 3.4 49 232-280 33-81 (122)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.50 E-value=7.7e-15 Score=116.15 Aligned_cols=71 Identities=35% Similarity=0.767 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCccccccCC---CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 210 EAVEALIQELPKFRLKAVP---TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 210 ~~~~~~~~~lp~~~~~~~~---~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
++.++.++.+|...++... .++..|+||++.+..++.++.+||||.||..||..|++.+.+||+||..+.+
T Consensus 16 ~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 16 PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3445667889988776543 3456899999999988889999999999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2.8e-14 Score=108.58 Aligned_cols=65 Identities=35% Similarity=0.913 Sum_probs=54.3
Q ss_pred HhcCccccccC--CCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 217 QELPKFRLKAV--PTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 217 ~~lp~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
+.+|..+++.. ..++..|+||++.+..++..+.+||+|.||..|+.+|++.+.+||+||+.+.+.
T Consensus 7 ~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 7 GQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 55666666543 234578999999999888889999999999999999999999999999988654
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.41 E-value=1.2e-13 Score=98.45 Aligned_cols=50 Identities=50% Similarity=1.096 Sum_probs=45.5
Q ss_pred CccccccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
++.+|+||++.+..++.+..++ |||.||..|+.+|++.+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4478999999999888899998 9999999999999999999999998763
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=101.03 Aligned_cols=53 Identities=43% Similarity=0.966 Sum_probs=47.4
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
..+..|+||++.+..++.++.++|||.||..|+..|+..+.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34578999999998778899999999999999999999999999999988654
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=2.9e-13 Score=103.52 Aligned_cols=54 Identities=43% Similarity=0.918 Sum_probs=47.8
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 282 (382)
.++..|+||++.+..++....++|||.||..||.+|++.+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 345789999999987778888999999999999999999999999999886543
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=102.23 Aligned_cols=52 Identities=35% Similarity=0.832 Sum_probs=46.8
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
.+..|+||++.+..++....++|+|.||..||.+|++.+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 3568999999999888888899999999999999999989999999988654
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.29 E-value=1.9e-12 Score=92.08 Aligned_cols=50 Identities=38% Similarity=0.827 Sum_probs=43.2
Q ss_pred CccccccccccccCC-CceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 230 DCSECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
++..|+||++.+..+ +.+..++|||.||..|+.+|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 347899999999643 35788899999999999999998899999998764
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=100.36 Aligned_cols=49 Identities=31% Similarity=0.754 Sum_probs=40.3
Q ss_pred ccccccccccccC-----------CCceeeeC-CCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 231 CSECPICLEEFHV-----------GNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 231 ~~~C~IC~~~~~~-----------~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
++.|+||++.+.. ++.++.++ |||.||..||.+|++.+.+||+||.++.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 4678888888753 34466665 9999999999999999999999998875
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.27 E-value=2.2e-12 Score=96.55 Aligned_cols=53 Identities=26% Similarity=0.721 Sum_probs=44.6
Q ss_pred CCccccccccccccC----CCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHV----GNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~----~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
+++..|+||++.+.. ++.++.++|||.||..|+.+|++.+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 345789999999873 13348899999999999999999999999999988654
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.6e-12 Score=95.43 Aligned_cols=51 Identities=25% Similarity=0.679 Sum_probs=43.1
Q ss_pred CCccccccccccccCC----CceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 229 TDCSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
.+...|+||++.+... +.++.++|||.||..|+..|++.+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3457899999999732 22388999999999999999999999999998875
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5e-12 Score=95.22 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=43.7
Q ss_pred CccccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 282 (382)
+...|+||++.+. +++.+ +|||.||..||..|++.+.+||+||..+....
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 14 PYILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3578999999998 67776 89999999999999998899999999886543
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.5e-12 Score=95.85 Aligned_cols=49 Identities=31% Similarity=0.635 Sum_probs=43.9
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
.++..|+||++.+. +++.++|||.||..|+..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34578999999997 78999999999999999999998999999988753
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.23 E-value=1.1e-11 Score=101.57 Aligned_cols=51 Identities=27% Similarity=0.628 Sum_probs=41.0
Q ss_pred ccccccccccccCCC---------------ceeeeCCCCccChhhHHHHH-----hcCCCCcccCccCCCC
Q 016797 231 CSECPICLEEFHVGN---------------EVRGLPCAHNFHIECIDEWL-----RLNVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl-----~~~~~CP~CR~~i~~~ 281 (382)
+..|+||++.+..+. ..+.++|+|.||..||..|+ ..+.+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999996532 23378899999999999999 4567899999877543
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.22 E-value=4.6e-12 Score=92.67 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=43.5
Q ss_pred ccccccccccccCC----CceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 231 CSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
+..|+||++.+... +.+..++|||.||..|+.+|++.+.+||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 46899999999732 3348899999999999999999999999999988654
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5e-12 Score=94.53 Aligned_cols=49 Identities=39% Similarity=0.820 Sum_probs=43.3
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 282 (382)
+...|+||++.+. . +.++|||.||..|+.+|+..+.+||+||..+....
T Consensus 14 ~~~~C~IC~~~~~---~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRA---D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCC---S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCcc---C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3578999999987 4 88999999999999999999999999999886543
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=7.8e-12 Score=92.87 Aligned_cols=48 Identities=44% Similarity=0.956 Sum_probs=42.2
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
.+..|+||++.+. +..+.++|||.||..|+..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4568999999987 23588999999999999999999999999998875
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=92.64 Aligned_cols=50 Identities=36% Similarity=0.741 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHh---cCCCCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LNVKCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~CR~~i~~~ 281 (382)
.++..|+||++.+. +++.++|||.||..|+..|++ .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 34578999999998 788899999999999999996 456899999988643
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.4e-11 Score=94.68 Aligned_cols=53 Identities=30% Similarity=0.674 Sum_probs=44.6
Q ss_pred CCccccccccccccCCCc-eeeeCCCCccChhhHHHHHhcC---CCCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLRLN---VKCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~---~~CP~CR~~i~~~ 281 (382)
.+...|+||++.+..++. ++.++|||.||..|+..|++.+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345789999999985443 8899999999999999999875 6899999887543
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=91.33 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=42.9
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~ 281 (382)
.+...|+||++.+. +++.++|||.||..|+..|+. .+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34578999999998 777799999999999999994 567899999988654
No 20
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.18 E-value=1.3e-11 Score=100.32 Aligned_cols=50 Identities=28% Similarity=0.520 Sum_probs=42.2
Q ss_pred CccccccccccccCCC---------------ceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 230 DCSECPICLEEFHVGN---------------EVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
+++.|+||++.+...- ..+.++|+|.||..||.+|+..+.+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4578999999987431 2466889999999999999999999999998753
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=95.01 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=43.0
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
+...|+||++.+. .++.++|||.||..|+..|+....+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3468999999998 7888999999999999999998899999999885
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=9.5e-12 Score=105.82 Aligned_cols=47 Identities=40% Similarity=0.886 Sum_probs=43.2
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
+..|+||++.+. .++.+||||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 357999999998 88999999999999999999999999999998854
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=92.55 Aligned_cols=48 Identities=27% Similarity=0.576 Sum_probs=41.9
Q ss_pred CccccccccccccCCCceeeeC-CCCccChhhHHHHHhcC--CCCcccCccCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLN--VKCPRCRCSVFP 280 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~i~~ 280 (382)
++..|+||++.+. +++.++ |||.||..||..|++.+ .+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3578999999998 888999 99999999999999865 689999987543
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.15 E-value=2.7e-11 Score=92.45 Aligned_cols=49 Identities=20% Similarity=0.534 Sum_probs=43.7
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN 281 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~ 281 (382)
++..|+||++.+. +++.++|||.||..||..|+.. +.+||+||..+...
T Consensus 7 ~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4578999999998 8899999999999999999987 77899999987643
No 25
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.2e-11 Score=92.26 Aligned_cols=54 Identities=24% Similarity=0.560 Sum_probs=43.9
Q ss_pred CCCccccccccccccCCCceeeeCCC-----CccChhhHHHHHhcC--CCCcccCccCCCCC
Q 016797 228 PTDCSECPICLEEFHVGNEVRGLPCA-----HNFHIECIDEWLRLN--VKCPRCRCSVFPNL 282 (382)
Q Consensus 228 ~~~~~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~--~~CP~CR~~i~~~~ 282 (382)
..++..|.||++++..++. ..+||+ |.||..||++|+..+ .+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3455789999999876555 468996 999999999999865 48999999886543
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.7e-11 Score=86.51 Aligned_cols=43 Identities=35% Similarity=0.801 Sum_probs=38.0
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHh---cCCCCccc
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LNVKCPRC 274 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~C 274 (382)
.++..|+||++.+. +++.++|||.||..||.+|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34578999999998 788899999999999999998 45689998
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.10 E-value=2.3e-11 Score=92.87 Aligned_cols=49 Identities=33% Similarity=0.601 Sum_probs=42.8
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhc-------CCCCcccCccCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-------NVKCPRCRCSVFP 280 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-------~~~CP~CR~~i~~ 280 (382)
.++..|+||++.+. +++.++|||.||..|+..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34578999999998 7888999999999999999986 5679999998864
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=7.8e-11 Score=90.88 Aligned_cols=49 Identities=33% Similarity=0.622 Sum_probs=42.9
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhc------CCCCcccCccCCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL------NVKCPRCRCSVFPN 281 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~CP~CR~~i~~~ 281 (382)
++..|+||++.+. +++.++|||.||..|+..|+.. ...||.||..+...
T Consensus 18 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3578999999998 7788999999999999999987 66899999988643
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=8.1e-11 Score=90.79 Aligned_cols=48 Identities=35% Similarity=0.774 Sum_probs=42.7
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhc------CCCCcccCccCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL------NVKCPRCRCSVFP 280 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~CP~CR~~i~~ 280 (382)
+...|+||++.+. +++.++|||.||..|+..|+.. ...||.||..+..
T Consensus 18 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3578999999998 7888999999999999999987 7789999998864
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.08 E-value=3.4e-11 Score=96.73 Aligned_cols=46 Identities=30% Similarity=0.774 Sum_probs=41.8
Q ss_pred cccccccccccCCCceee-eCCCCccChhhHHHHHhcC-CCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~ 280 (382)
..|+||++.+. +++. ++|||.||..||..|+..+ .+||+||..+..
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 68999999998 7888 9999999999999999977 689999998854
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.08 E-value=9.1e-11 Score=92.40 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=41.9
Q ss_pred CCccccccccccccCCCceeeeC-CCCccChhhHHHHHhcC--CCCcccCccCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLN--VKCPRCRCSVF 279 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~i~ 279 (382)
.++..|+||++.+. +++.++ |||.||..||..|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34578999999998 889999 99999999999999743 58999998874
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=1e-10 Score=95.03 Aligned_cols=48 Identities=27% Similarity=0.616 Sum_probs=43.4
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
+..|+||++.+. +++.+ +|||.||..||..|+..+.+||+||..+...
T Consensus 15 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 468999999998 78887 9999999999999999989999999988654
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.05 E-value=8.6e-11 Score=97.89 Aligned_cols=47 Identities=30% Similarity=0.607 Sum_probs=42.0
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC-CCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~i~~ 280 (382)
+..|+||++.+. .++.++|||.||..||..|+..+. +||+||..+..
T Consensus 52 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 368999999998 889999999999999999998544 89999998865
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.05 E-value=7e-11 Score=94.45 Aligned_cols=46 Identities=33% Similarity=0.773 Sum_probs=41.9
Q ss_pred cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|+||++.+. +++.+ +|||.||..|+..|+..+.+||+||..+..
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 68999999998 67777 899999999999999988999999988764
No 35
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.04 E-value=2.6e-11 Score=100.08 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=1.0
Q ss_pred CccccccccccccCC-------------Cc--eeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 230 DCSECPICLEEFHVG-------------NE--VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~-------------~~--~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
+++.|+||++.|... ++ ...++|+|.||..||.+|++.+.+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457899999999742 11 233589999999999999999999999998753
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=82.95 Aligned_cols=42 Identities=36% Similarity=0.875 Sum_probs=36.6
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHh---cCCCCccc
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LNVKCPRC 274 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~C 274 (382)
+...|+||++.+. +++.++|||.||..||.+|+. .+.+||+|
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4578999999998 778899999999999999954 56789998
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=1.5e-10 Score=96.80 Aligned_cols=53 Identities=25% Similarity=0.628 Sum_probs=44.8
Q ss_pred CccccccccccccCC----CceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797 230 DCSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 282 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~ 282 (382)
++..|+||++.+... +.++.++|||.||..||.+|++.+.+||+||..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 457899999999731 23389999999999999999999999999999886543
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=1.9e-10 Score=84.69 Aligned_cols=51 Identities=20% Similarity=0.470 Sum_probs=40.0
Q ss_pred ccccccccc-cccCCCc-eeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCC
Q 016797 231 CSECPICLE-EFHVGNE-VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~-~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~ 281 (382)
+..|+||++ .+..... ...++|||.||..|+.+|+.. ...||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 468999999 7763322 246799999999999999764 46799999988654
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.96 E-value=8.5e-11 Score=96.57 Aligned_cols=46 Identities=33% Similarity=0.684 Sum_probs=41.5
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVF 279 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~ 279 (382)
+..|+||++.+. +++.++|||.||..|+..|+.. +.+||.||..+.
T Consensus 15 ~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 468999999998 8899999999999999999976 668999998875
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=3.6e-10 Score=92.04 Aligned_cols=47 Identities=34% Similarity=0.703 Sum_probs=41.3
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCC---CCcccCccCCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV---KCPRCRCSVFPN 281 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~i~~~ 281 (382)
..|+||++.+. .++.++|||.||..|+..|+..+. +||+||..+...
T Consensus 22 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 22 LECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp TSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 58999999998 788899999999999999998654 799999887643
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.94 E-value=3.7e-10 Score=97.38 Aligned_cols=48 Identities=27% Similarity=0.556 Sum_probs=42.9
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC-CCcccCccCCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~i~~~ 281 (382)
...|+||++.+. +++.++|||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 368999999998 888999999999999999998654 799999988755
No 42
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=6.5e-10 Score=84.09 Aligned_cols=49 Identities=22% Similarity=0.610 Sum_probs=40.9
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcC--CCCcccCccCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN--VKCPRCRCSVFP 280 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~--~~CP~CR~~i~~ 280 (382)
...+|+||.+.+..++... .|+|.||..||.+|++.+ .+||+||.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3468999999998655443 799999999999999977 789999987653
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=2.6e-10 Score=81.65 Aligned_cols=47 Identities=23% Similarity=0.546 Sum_probs=39.9
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
.+...|+||++.+. +++.++|||.||..|+..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 34578999999998 7899999999999999773 56899999987643
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=4e-10 Score=93.08 Aligned_cols=50 Identities=36% Similarity=0.644 Sum_probs=43.6
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC-CCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~i~~~ 281 (382)
.+...|+||++.+. .++.++|||.||..||..|+.... +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 44579999999998 788899999999999999998665 899999988653
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.92 E-value=4.7e-10 Score=98.05 Aligned_cols=48 Identities=35% Similarity=0.755 Sum_probs=42.0
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHHHHhc-CCCCcccCccCCCC
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~ 281 (382)
...|+||++.+. +++.+ +|||.||..||..|+.. +..||+||..+...
T Consensus 54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 358999999998 67777 89999999999999997 77899999988543
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.92 E-value=4.7e-10 Score=87.35 Aligned_cols=47 Identities=15% Similarity=-0.007 Sum_probs=43.5
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
...|+||++.+. +|+.++|||.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 14 EFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred heECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 478999999999 99999999999999999999988899999988754
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.92 E-value=6.1e-10 Score=89.44 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=44.6
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
+...|+||++.|. +|+.++|||.||..||..|+..+.+||+||.++...
T Consensus 28 ~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred HhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 3578999999999 999999999999999999999888999999987653
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.91 E-value=3.9e-10 Score=94.19 Aligned_cols=53 Identities=26% Similarity=0.721 Sum_probs=44.6
Q ss_pred CCccccccccccccC----CCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHV----GNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~----~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
++...|+||++.+.. +...+.++|||.||..|+.+|++.+.+||+||..+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 445789999999873 12348889999999999999999999999999988654
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.90 E-value=5.7e-10 Score=82.15 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=41.3
Q ss_pred CccccccccccccCCCceeee--CCCCc-cChhhHHHHHhcCCCCcccCccCC
Q 016797 230 DCSECPICLEEFHVGNEVRGL--PCAHN-FHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
++..|.||++... ++..+ ||||. ||..|+..|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3468999999987 66766 99999 899999999998889999999874
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.88 E-value=1.1e-09 Score=87.64 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=44.2
Q ss_pred ccccccccccccCCCceeeeCCC-CccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCA-HNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
+..|+||++.|. +|+.++|| |.||..||..|+..+.+||+||.++...
T Consensus 22 ~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 22 EFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred hcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 478999999999 99999999 9999999999999888999999988654
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.86 E-value=7.9e-10 Score=90.89 Aligned_cols=46 Identities=33% Similarity=0.721 Sum_probs=41.8
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~ 280 (382)
..|+||++.+. +++.++|||.||..||..|+.. ..+||+||..+..
T Consensus 24 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 68999999998 8888999999999999999986 6789999998754
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.85 E-value=9.7e-10 Score=80.61 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=41.0
Q ss_pred CccccccccccccCCCceeee--CCCCc-cChhhHHHHHhcCCCCcccCccCC
Q 016797 230 DCSECPICLEEFHVGNEVRGL--PCAHN-FHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
....|.||++... ++..+ ||||. ||..|+..|.+.+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3468999999877 66666 99998 999999999988889999999874
No 53
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.84 E-value=3.3e-09 Score=81.19 Aligned_cols=52 Identities=27% Similarity=0.606 Sum_probs=40.1
Q ss_pred CCccccccccccccCCCceeeeC--CCCccChhhHHHHHh-cCCCCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLP--CAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~ 281 (382)
+++..|+||++.+... .+..+| |||.||..|+..++. ....||.||..+...
T Consensus 9 ~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4457899999988532 334444 999999999999875 356799999988654
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.83 E-value=1e-09 Score=93.58 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC-CCcccCccCCC
Q 016797 228 PTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFP 280 (382)
Q Consensus 228 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~i~~ 280 (382)
.++...|+||++.+. +++.++|||.||..||..|+.... +||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 345579999999998 888999999999999999998654 89999997643
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.83 E-value=1.8e-09 Score=106.11 Aligned_cols=48 Identities=31% Similarity=0.773 Sum_probs=43.0
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~ 281 (382)
...|+||++.+. .++.+||||.||..|+..|+. .+.+||+||..+...
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 368999999997 899999999999999999998 678999999988643
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=4e-09 Score=86.85 Aligned_cols=44 Identities=25% Similarity=0.635 Sum_probs=40.0
Q ss_pred cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|+||++.+. +++.+ +|||.||..||..|+. ..||+||..+..
T Consensus 23 ~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 68999999998 88888 9999999999999987 789999998743
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=4.7e-09 Score=98.60 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=42.9
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcC-CCCcccCccCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP 280 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~ 280 (382)
.+...|+||++.+. +|+.+||||+||..||..|+..+ .+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34578999999999 99999999999999999999864 459999988854
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.78 E-value=1.6e-09 Score=81.96 Aligned_cols=42 Identities=26% Similarity=0.592 Sum_probs=38.1
Q ss_pred cccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|+||++.+. +++.+||||. ||..|+..| ..||+||..+..
T Consensus 25 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 68999999988 8999999999 999999988 789999988753
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.68 E-value=1.3e-08 Score=90.02 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=43.0
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcC-CCCcccCccCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP 280 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~ 280 (382)
.+...|+||++.|. +|+.+||||+||..||..|+..+ .+||+||.++..
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 45679999999999 89999999999999999999864 479999988754
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.3e-08 Score=75.67 Aligned_cols=48 Identities=25% Similarity=0.542 Sum_probs=40.1
Q ss_pred CCCCccccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCCC
Q 016797 227 VPTDCSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 227 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
..++...|.||++... .++.+||||. ||..|+.. ...||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3445678999999987 8999999999 99999984 47899999988643
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=81.04 Aligned_cols=45 Identities=24% Similarity=0.554 Sum_probs=39.6
Q ss_pred CccccccccccccCCCceeeeC-CCCccChhhHHHHHhcC------CCCcc--cCcc
Q 016797 230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLN------VKCPR--CRCS 277 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~------~~CP~--CR~~ 277 (382)
++..|+||++.|. +|+.++ |||.||..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3478999999999 899996 99999999999999754 48999 9865
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.62 E-value=1.3e-08 Score=89.19 Aligned_cols=50 Identities=36% Similarity=0.653 Sum_probs=43.4
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcC-CCCcccCccCCCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFPN 281 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~~ 281 (382)
.+...|+||++.+. .++.++|||.||..|+..|+... .+||.||..+...
T Consensus 16 ~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 44579999999998 78889999999999999999764 4899999988654
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.2e-08 Score=75.80 Aligned_cols=42 Identities=26% Similarity=0.595 Sum_probs=36.9
Q ss_pred cccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|+||++.+. +++.+||||. ||..|+.. ...||+||.++..
T Consensus 26 ~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 57999999987 8899999999 99999964 3789999998854
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.51 E-value=2.4e-08 Score=76.58 Aligned_cols=42 Identities=31% Similarity=0.597 Sum_probs=37.4
Q ss_pred cccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|.||++... +++.+||||. ||..|+..| ..||+||..+..
T Consensus 19 ~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 58999999988 8999999999 999999876 489999998754
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.50 E-value=2.8e-08 Score=95.15 Aligned_cols=51 Identities=24% Similarity=0.615 Sum_probs=39.1
Q ss_pred CCccccccccccccC-CCce----eeeCCCCccChhhHHHHHhcC-----------CCCcccCccCC
Q 016797 229 TDCSECPICLEEFHV-GNEV----RGLPCAHNFHIECIDEWLRLN-----------VKCPRCRCSVF 279 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~-~~~~----~~lpC~H~Fh~~Ci~~wl~~~-----------~~CP~CR~~i~ 279 (382)
+...+|+||++.+.. ++-+ ...+|||.||..|+.+|++.. .+||+||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345689999999886 3222 234699999999999999742 35999998774
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.31 E-value=4.1e-07 Score=65.85 Aligned_cols=48 Identities=33% Similarity=0.680 Sum_probs=37.3
Q ss_pred CCccccccccccccCCCceeeeCCC--C---ccChhhHHHHHhc--CCCCcccCccCC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCA--H---NFHIECIDEWLRL--NVKCPRCRCSVF 279 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~--H---~Fh~~Ci~~wl~~--~~~CP~CR~~i~ 279 (382)
++...|.||++... +...+||. | .||..|+.+|+.. +.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34578999999742 34578954 4 8999999999974 578999998764
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.31 E-value=1.9e-07 Score=67.87 Aligned_cols=47 Identities=9% Similarity=-0.000 Sum_probs=42.4
Q ss_pred cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
..|+||++.+. +++.+ +|||+|.+.||.+|++.+.+||+++.++...
T Consensus 4 ~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 57999999998 88998 8999999999999999888999999887543
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.31 E-value=1.5e-07 Score=91.63 Aligned_cols=43 Identities=30% Similarity=0.646 Sum_probs=38.5
Q ss_pred ccccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
+..|+||++.+. .++.+||||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 368999999998 8999999999 999999987 689999998753
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.28 E-value=2.9e-07 Score=72.56 Aligned_cols=47 Identities=28% Similarity=0.700 Sum_probs=36.4
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhc--------CCCCcc--cCcc
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--------NVKCPR--CRCS 277 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~--CR~~ 277 (382)
...|+||++.+...+.....+|||.||..|+..++.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4689999999874333333479999999999999863 236999 9977
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.21 E-value=4.9e-07 Score=83.88 Aligned_cols=47 Identities=26% Similarity=0.472 Sum_probs=40.1
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHHHHhcC--CCCcc--cCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLN--VKCPR--CRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~--~~CP~--CR~~i~~ 280 (382)
+..|+||++.|. .|+.. .|||.||..||..|++.+ .+||+ ||..+..
T Consensus 181 el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 458999999998 88875 899999999999999864 46999 9987643
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.92 E-value=5.9e-06 Score=65.06 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=38.2
Q ss_pred ccccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCC
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP 280 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~ 280 (382)
-|.+|--.+. ...+.+||+|+||.+|+..|.+ ..++||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888877776 3678899999999999999975 46789999998753
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.44 E-value=7.4e-05 Score=68.88 Aligned_cols=48 Identities=23% Similarity=0.638 Sum_probs=38.5
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC--CCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV--KCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~~i~~ 280 (382)
...|.||.+....|..+. .|+|.||..|+..|++.+. .||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 468999999998654332 2999999999999998654 89999987643
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.06 E-value=0.05 Score=42.06 Aligned_cols=49 Identities=24% Similarity=0.546 Sum_probs=39.9
Q ss_pred cccccccccccCCCceeeeCC-CCccChhhHHHHHhcCCCCcccCccCCCCCccc
Q 016797 232 SECPICLEEFHVGNEVRGLPC-AHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLS 285 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC-~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~~~ 285 (382)
..|..|....+ -...| .|..|..|+...+.....||+|+.+++.....+
T Consensus 29 ~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 29 QFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred ccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 57999987754 34556 699999999999999999999999988765544
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.71 E-value=0.081 Score=41.29 Aligned_cols=32 Identities=16% Similarity=0.401 Sum_probs=24.9
Q ss_pred ccccccccccccCCCceee--eCCCCccChhhHHHH
Q 016797 231 CSECPICLEEFHVGNEVRG--LPCAHNFHIECIDEW 264 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~--lpC~H~Fh~~Ci~~w 264 (382)
+..|.||.+.+.. +++. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 3689999986431 4444 889999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.79 E-value=0.19 Score=36.48 Aligned_cols=46 Identities=24% Similarity=0.474 Sum_probs=31.4
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC----CCcccCccC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCSV 278 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~i 278 (382)
....|.||.+. ++-..--.|...||..|+...+.... .||.|+...
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 44689999753 22222223889999999988776433 499997654
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.36 E-value=0.74 Score=34.82 Aligned_cols=31 Identities=23% Similarity=0.524 Sum_probs=22.3
Q ss_pred CccccccccccccCCCceeeeC---CCCccChhhHHHH
Q 016797 230 DCSECPICLEEFHVGNEVRGLP---CAHNFHIECIDEW 264 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~w 264 (382)
.+..|.||-.- . .-.++| |+-+||..|+++.
T Consensus 14 ~D~~C~VC~~~-t---~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-T---AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-C---SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccc-c---ccceeccccccccccHhhcccc
Confidence 45789999643 2 223344 7899999999996
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.80 E-value=0.35 Score=35.66 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=33.3
Q ss_pred cCCCCccccccccccccCCCceeee-CCCCccChhhHHHHHhc----CCCCcccCccCC
Q 016797 226 AVPTDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL----NVKCPRCRCSVF 279 (382)
Q Consensus 226 ~~~~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~----~~~CP~CR~~i~ 279 (382)
+...+...|.||..... ++..+.- .|...||..|+..-... .-.||.|+..+.
T Consensus 13 ~~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 13 EWGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred ccCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 33344567999987753 2223332 38888999998654432 335999986553
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.60 E-value=0.46 Score=33.85 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=32.1
Q ss_pred CCccccccccccccCCCceeee-CCCCccChhhHHHHHh-----cCCCCcccCcc
Q 016797 229 TDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR-----LNVKCPRCRCS 277 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~-----~~~~CP~CR~~ 277 (382)
++...|++|...+..+...+.- .|..-||..|+.--.. ....||.|+.+
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3456799999887544333333 3888899999753321 24469999753
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=78.73 E-value=2.2 Score=46.24 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=43.2
Q ss_pred CccccccccccccCCCceeeeCCC-CccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCA-HNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
+...|+|-.+.+. +|+.+|.| +.+-+.+|.+|+..+.+||.=|.++...
T Consensus 890 ~~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3468999999999 99999998 5899999999999999999999887643
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.57 E-value=1.1 Score=30.22 Aligned_cols=44 Identities=23% Similarity=0.521 Sum_probs=26.9
Q ss_pred ccccccccccCCCceeeeCCCCccChhhHHHHHhcC----CCCcccCc
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----VKCPRCRC 276 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~CP~CR~ 276 (382)
.|.||...-..++-..--.|...||..|+.+=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898753322222222378899999997644432 24999964
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=76.95 E-value=0.85 Score=32.28 Aligned_cols=47 Identities=28% Similarity=0.694 Sum_probs=29.7
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcC----CCCcccCccC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----VKCPRCRCSV 278 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~CP~CR~~i 278 (382)
..+..|.+|.+. ++-..--.|...||..|+.+-+... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 445789999863 2222222377889999998654432 2499997543
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=75.76 E-value=1.3 Score=31.32 Aligned_cols=43 Identities=26% Similarity=0.698 Sum_probs=28.7
Q ss_pred CccccccccccccCCCceeee-CCCCccChhhHHHHHhcC----CCCcccCc
Q 016797 230 DCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLN----VKCPRCRC 276 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~----~~CP~CR~ 276 (382)
.+..|.+|.+. + +...- .|...||..|+..-+... =.||.|+.
T Consensus 10 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45689999873 2 33222 377899999998754322 24999964
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=73.71 E-value=2.4 Score=36.71 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=30.4
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcC----CCCcccCccC
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----VKCPRCRCSV 278 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~CP~CR~~i 278 (382)
+++.|.+|.+. |+-...=.|...||..|+.+-+... =.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 34689999854 3322222378899999987765532 2499998654
No 84
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=73.57 E-value=2.2 Score=35.26 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=30.6
Q ss_pred CCCcccccccccccc-CC-CceeeeCCCCccChhhHHHHHh-cCC---CCcccCc
Q 016797 228 PTDCSECPICLEEFH-VG-NEVRGLPCAHNFHIECIDEWLR-LNV---KCPRCRC 276 (382)
Q Consensus 228 ~~~~~~C~IC~~~~~-~~-~~~~~lpC~H~Fh~~Ci~~wl~-~~~---~CP~CR~ 276 (382)
..++..|.+|...+. .+ ....-..|.|.+|..|-..--. .+. .|-+|+.
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred cCCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 345678999999983 22 2333445999999999532211 111 2888875
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.30 E-value=0.58 Score=32.50 Aligned_cols=46 Identities=26% Similarity=0.660 Sum_probs=29.0
Q ss_pred CCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC----CCcccCc
Q 016797 228 PTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRC 276 (382)
Q Consensus 228 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~ 276 (382)
...+..|.+|.+. ++-..--.|...||..|+.+-+.... .||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3445789999874 22222223788899999986544322 3888853
No 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=72.92 E-value=2.2 Score=32.59 Aligned_cols=47 Identities=23% Similarity=0.515 Sum_probs=30.3
Q ss_pred CCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC----CCcccCcc
Q 016797 228 PTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCS 277 (382)
Q Consensus 228 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 277 (382)
...+..|.+|.+. ++-..--.|.-.||..|+.+=+.... .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3445789999864 22222223777899999977654322 49999753
No 87
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=72.21 E-value=1 Score=40.00 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=30.8
Q ss_pred CCccccccccccccCCCceeeeC-CCCccChhhHHHHHhcC----CCCcccCccC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLN----VKCPRCRCSV 278 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~----~~CP~CR~~i 278 (382)
..++.|.+|... | +...-. |...||..|+.+-+... =.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 445789999854 2 222222 78899999997765532 2499998644
No 88
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=72.09 E-value=1.3 Score=38.70 Aligned_cols=48 Identities=19% Similarity=0.402 Sum_probs=33.1
Q ss_pred cccccccccccCCCc---eeeeC-CCCccChhhHHHH------Hh-----cCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNE---VRGLP-CAHNFHIECIDEW------LR-----LNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~---~~~lp-C~H~Fh~~Ci~~w------l~-----~~~~CP~CR~~i~ 279 (382)
..|+||...+..++. .+.-. |..-||..|..-- +. ..-.||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 579999999987652 33333 8889999996321 11 1568999986543
No 89
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.02 E-value=16 Score=27.86 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=37.8
Q ss_pred ccccccccccccCCCc--e--eeeCCCCccChhhHHHHH-hcCCCCcccCccCCCCCccc
Q 016797 231 CSECPICLEEFHVGNE--V--RGLPCAHNFHIECIDEWL-RLNVKCPRCRCSVFPNLDLS 285 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~--~--~~lpC~H~Fh~~Ci~~wl-~~~~~CP~CR~~i~~~~~~~ 285 (382)
...|.||-++.-.... + ..-.|+--.|+.|.+-=. +.++.||-|+......+..+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCC
Confidence 3589999999754322 2 223377789999986543 35778999998887654433
No 90
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=68.20 E-value=4.1 Score=30.45 Aligned_cols=36 Identities=25% Similarity=0.460 Sum_probs=26.4
Q ss_pred ccccccccccccCCCceeeeC--CCCccChhhHHHHHhc
Q 016797 231 CSECPICLEEFHVGNEVRGLP--CAHNFHIECIDEWLRL 267 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~~ 267 (382)
...|.+|.+.+++ ..-+..| =.|.||..|-+..++.
T Consensus 15 ~l~CtlC~erLEd-tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLED-THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSS-TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhcc-CceeeCCCccCCeeeccccHHHHHh
Confidence 3689999999872 2233334 3799999999998864
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=65.24 E-value=1.2 Score=32.03 Aligned_cols=45 Identities=27% Similarity=0.641 Sum_probs=29.0
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcC----CCCcccCc
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----VKCPRCRC 276 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~CP~CR~ 276 (382)
..+..|.||.+. ++-..-=.|...||..|+.+-+... =.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 345789999864 2222222378899999998644432 24999964
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=63.72 E-value=2.5 Score=33.41 Aligned_cols=47 Identities=19% Similarity=0.556 Sum_probs=29.8
Q ss_pred CCccccccccccccCCCceeeeCCCCccChhhHHHHHhc----CCCCcccC
Q 016797 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL----NVKCPRCR 275 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~----~~~CP~CR 275 (382)
.+++.|.||.+.-...+-..--.|+..||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 345789999876331111333458999999999876542 22377664
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=60.14 E-value=2.1 Score=29.95 Aligned_cols=45 Identities=27% Similarity=0.676 Sum_probs=29.0
Q ss_pred CccccccccccccCCCceeeeCCCCccChhhHHHHHhcC----CCCcccCcc
Q 016797 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----VKCPRCRCS 277 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~CP~CR~~ 277 (382)
.+..|.+|... ++-..--.|...||..|+.+-+... -.||.|+..
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 34689999874 2222222388899999998654432 249999653
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=58.22 E-value=3.2 Score=32.95 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=27.9
Q ss_pred cccccccccccCCCceeee-CCCCccChhhHHHHHhcC----CCCcccCc
Q 016797 232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLN----VKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~----~~CP~CR~ 276 (382)
..|.||.+.-..++....- .|...||..|+.+-+... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688887642222222222 388999999987655432 24999974
No 95
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=57.96 E-value=2.6 Score=36.85 Aligned_cols=44 Identities=25% Similarity=0.545 Sum_probs=28.9
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcC----CCCcccCcc
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----VKCPRCRCS 277 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~CP~CR~~ 277 (382)
++.|.+|.+. |+-...-.|...||..|+.+=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3679999854 2222222377789999997655432 249999865
No 96
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=57.52 E-value=6.9 Score=29.32 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=24.2
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHH
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDE 263 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~ 263 (382)
...|.+|...|..-.....- .||++||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 46899999999754333333 3999999999654
No 97
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=57.42 E-value=1.8 Score=35.13 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=29.7
Q ss_pred cccccccccccCCCceee-eCCCCccChhhHHHHHhcCCCCcccCc
Q 016797 232 SECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRLNVKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 276 (382)
..|..|...|..-..... -.||.+||..|..........|-.|-.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 579999999864333333 349999999997665444556888854
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.49 E-value=2 Score=32.98 Aligned_cols=47 Identities=26% Similarity=0.508 Sum_probs=29.8
Q ss_pred CccccccccccccCCCceeee-CCCCccChhhHHHHHhcCC----CCcccCcc
Q 016797 230 DCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNV----KCPRCRCS 277 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 277 (382)
++..|.||...-.. +....- .|...||..|+.+=+.... .||.|+..
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34679999876431 122222 3888999999975443322 39999753
No 99
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=56.15 E-value=10 Score=29.92 Aligned_cols=49 Identities=20% Similarity=0.506 Sum_probs=31.2
Q ss_pred CCCCccccccccccccCCCceeee---CCCCccChhhHHHHHhcCC----CCcccCccCCCC
Q 016797 227 VPTDCSECPICLEEFHVGNEVRGL---PCAHNFHIECIDEWLRLNV----KCPRCRCSVFPN 281 (382)
Q Consensus 227 ~~~~~~~C~IC~~~~~~~~~~~~l---pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~i~~~ 281 (382)
....+..|.+|.+. .+...- .|-..||..|+. +.... .||.|+..+...
T Consensus 11 ~~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 11 KQMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CCSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred cCCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 34456789999842 233333 377899999986 44322 399887666543
No 100
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=55.74 E-value=2.3 Score=30.20 Aligned_cols=50 Identities=24% Similarity=0.536 Sum_probs=31.2
Q ss_pred CCccccccccccccCC-Cceeee-CCCCccChhhHHHHHh-------cCCCCcccCccC
Q 016797 229 TDCSECPICLEEFHVG-NEVRGL-PCAHNFHIECIDEWLR-------LNVKCPRCRCSV 278 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~-~~~~~l-pC~H~Fh~~Ci~~wl~-------~~~~CP~CR~~i 278 (382)
.++..|.||....... .....- .|...||..|+..-+. ..=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3457899999864321 223222 3888999999876432 123499997543
No 101
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=55.31 E-value=7.3 Score=29.02 Aligned_cols=33 Identities=24% Similarity=0.604 Sum_probs=23.9
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHH
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDE 263 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~ 263 (382)
...|.+|...|.....-..- .||++||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 35799999999754333333 3999999999654
No 102
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.14 E-value=6.2 Score=32.02 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=23.7
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHH
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDE 263 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~ 263 (382)
...|.+|...|.....-..- .||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 35799999998754333333 3999999999543
No 103
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.32 E-value=9.8 Score=28.02 Aligned_cols=46 Identities=22% Similarity=0.500 Sum_probs=29.0
Q ss_pred cccccccccccCCCceeeeC-CCCccChhhHHHHHh-----cCCCCcccCccC
Q 016797 232 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLR-----LNVKCPRCRCSV 278 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~i 278 (382)
..| ||...+..+...+.-. |..-||..|+.--.. ....||.|+..-
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 455 9988774333333333 888899999842211 244699998643
No 104
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=54.23 E-value=6.9 Score=29.77 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=24.5
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHHH
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEW 264 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~w 264 (382)
...|.+|...|..-.....- .||++||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 35799999998754333333 49999999997654
No 105
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=53.02 E-value=8.7 Score=27.91 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=22.5
Q ss_pred cccccccccccCCCceeee-CCCCccChhhHH
Q 016797 232 SECPICLEEFHVGNEVRGL-PCAHNFHIECID 262 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~ 262 (382)
..|.+|...|..-.....- .||++||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 5799999998743333333 399999999964
No 106
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.38 E-value=8.9 Score=28.64 Aligned_cols=31 Identities=26% Similarity=0.583 Sum_probs=22.2
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhH
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECI 261 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci 261 (382)
...|.+|...|..-..-..- .||++||..|.
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 35899999998643333333 49999999884
No 107
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=51.20 E-value=9.7 Score=28.84 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=24.4
Q ss_pred CccccccccccccCCCceeee-CCCCccChhhHHH
Q 016797 230 DCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDE 263 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~ 263 (382)
+...|.+|...|..-..-..- .||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 345899999998754333333 4999999999654
No 108
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=51.08 E-value=5.5 Score=29.00 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=29.2
Q ss_pred CCcccccccccccc-CCCceeee-CCCCccChhhHHHHHhc--CCCCcccCc
Q 016797 229 TDCSECPICLEEFH-VGNEVRGL-PCAHNFHIECIDEWLRL--NVKCPRCRC 276 (382)
Q Consensus 229 ~~~~~C~IC~~~~~-~~~~~~~l-pC~H~Fh~~Ci~~wl~~--~~~CP~CR~ 276 (382)
.++..|.||.+.-. .++....- .|.-.||..|+..-... .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 44578999987642 22233332 38889999998653211 224888864
No 109
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=50.83 E-value=13 Score=27.01 Aligned_cols=44 Identities=27% Similarity=0.625 Sum_probs=25.5
Q ss_pred ccccccccccccCCCceeeeC--CC-CccChhhHHHHHhc----CCCCcccCccC
Q 016797 231 CSECPICLEEFHVGNEVRGLP--CA-HNFHIECIDEWLRL----NVKCPRCRCSV 278 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lp--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~~i 278 (382)
...| ||..... ++-+.-=. |. ..||..|+. +.. +-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3467 8987642 22111112 55 589999986 332 23499997544
No 110
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=50.65 E-value=15 Score=30.44 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCCccccccccccccCCCceeeeCCCCccChhhHHHHHh-----------cCCCCcccCc
Q 016797 228 PTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-----------LNVKCPRCRC 276 (382)
Q Consensus 228 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-----------~~~~CP~CR~ 276 (382)
+..++.|.+|.+.=. -..-=.|-..||..|+.+-+. ..=.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~---LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSS---EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCc---EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 344678999987532 222224888999999997663 1224999974
No 111
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=49.98 E-value=6.3 Score=37.19 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=39.4
Q ss_pred HHHHHHhcCccccccCCCCccccccccccccCCCceeee---CCC--CccChhhHHHHHhcCCCCcccCcc
Q 016797 212 VEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGL---PCA--HNFHIECIDEWLRLNVKCPRCRCS 277 (382)
Q Consensus 212 ~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l---pC~--H~Fh~~Ci~~wl~~~~~CP~CR~~ 277 (382)
.......++....... .....|++|......+ .... .=| |.+|..|-..|-..+..||.|-..
T Consensus 164 ~~~~a~~l~~~~~~~~-~~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 164 WSHWLLGLEEGAVVET-ESRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp HHHHHHTCCTTCSCCC-TTCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred HHHHHHhCCccccCcc-ccCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3445566655443333 4567999998876421 1110 123 467888888897788899999764
No 112
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=49.80 E-value=3.9 Score=34.89 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=29.1
Q ss_pred ccccccccccccCCCceeeeC-CCCccChhhHHHHH-----hcCCCCcccCc
Q 016797 231 CSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWL-----RLNVKCPRCRC 276 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl-----~~~~~CP~CR~ 276 (382)
...| +|......+.....-. |...||..|+.--. ...-.||.|+.
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 4578 9998764333333333 88899999984221 12446999985
No 113
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.44 E-value=7.6 Score=34.50 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=24.1
Q ss_pred ccccccccccccCCCceeeeC-CCCccChhhHHH
Q 016797 231 CSECPICLEEFHVGNEVRGLP-CAHNFHIECIDE 263 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~ 263 (382)
+..|.+|...|..-..-.... ||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 468999999987543333444 999999999643
No 114
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.25 E-value=12 Score=28.62 Aligned_cols=44 Identities=27% Similarity=0.625 Sum_probs=25.5
Q ss_pred ccccccccccccCCCceeeeC--CC-CccChhhHHHHHhc----CCCCcccCccC
Q 016797 231 CSECPICLEEFHVGNEVRGLP--CA-HNFHIECIDEWLRL----NVKCPRCRCSV 278 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lp--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~~i 278 (382)
...| ||..... ++-+.-=. |. ..||..|+. +.. +-.||.|+..-
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3456 9988643 22111112 54 579999986 322 33599997543
No 115
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.52 E-value=7.4 Score=28.41 Aligned_cols=45 Identities=22% Similarity=0.453 Sum_probs=28.2
Q ss_pred cccccccccccCCCceeee-CCCCccChhhHHHHH---------hcCCCCcccCccC
Q 016797 232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWL---------RLNVKCPRCRCSV 278 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl---------~~~~~CP~CR~~i 278 (382)
..| ||..... +...+.- .|..-||..|+.--. .....||.|+..-
T Consensus 17 ~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 456 8988765 2222222 388889999974211 2456799997543
No 116
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=48.49 E-value=6.6 Score=30.38 Aligned_cols=44 Identities=25% Similarity=0.448 Sum_probs=27.1
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhc---CCCCcccCc
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL---NVKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR~ 276 (382)
..| ||......+.-+.-=.|.-.||..|+..-... .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 456 89776543322222238889999998653322 235999973
No 117
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=48.46 E-value=6.3 Score=26.64 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=27.1
Q ss_pred ccccccccccCCCceeee--CCCCccChhhHHHH----HhcCCCCcccC
Q 016797 233 ECPICLEEFHVGNEVRGL--PCAHNFHIECIDEW----LRLNVKCPRCR 275 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~w----l~~~~~CP~CR 275 (382)
.|.+|...+..++..+.- .|..-||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 577898887544433333 37778999996421 12456699885
No 118
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.22 E-value=8.3 Score=34.52 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=24.2
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHH
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDE 263 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~ 263 (382)
+..|.+|...|..-...... .||++||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 35899999998754333333 3999999999654
No 119
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=48.17 E-value=8 Score=27.17 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=28.0
Q ss_pred cccccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCccc
Q 016797 232 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRC 274 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~C 274 (382)
..|--|...+.. .....-+ |++.||.+|=.-.-+.-.+||-|
T Consensus 16 ~~C~~C~~~~~~-~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKD-QHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTT-SEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCC-CccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 359999998852 1223344 99999999953333344569988
No 120
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=47.18 E-value=6.6 Score=29.79 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=29.8
Q ss_pred CCccccccccccccCC-Cceeee-CCCCccChhhHHHHHhc--CCCCcccCccC
Q 016797 229 TDCSECPICLEEFHVG-NEVRGL-PCAHNFHIECIDEWLRL--NVKCPRCRCSV 278 (382)
Q Consensus 229 ~~~~~C~IC~~~~~~~-~~~~~l-pC~H~Fh~~Ci~~wl~~--~~~CP~CR~~i 278 (382)
.++..|.||.+.-... +....- .|.-.||..|+..-... .=.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 3457899998753211 122222 27778999998753221 22499997543
No 121
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=45.43 E-value=23 Score=27.81 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=20.9
Q ss_pred ccccccccccccC-----CCce-eeeCCCCccChhhHH
Q 016797 231 CSECPICLEEFHV-----GNEV-RGLPCAHNFHIECID 262 (382)
Q Consensus 231 ~~~C~IC~~~~~~-----~~~~-~~lpC~H~Fh~~Ci~ 262 (382)
...|.+|+..-.. +++. .--.|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3679999876311 1222 233489999999995
No 122
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=44.44 E-value=14 Score=26.22 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=23.4
Q ss_pred CccccccccccccCCCceeee--CCCCccChhhHH
Q 016797 230 DCSECPICLEEFHVGNEVRGL--PCAHNFHIECID 262 (382)
Q Consensus 230 ~~~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~ 262 (382)
....|.+|...+..++..+.- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 346899999998755544444 488889999963
No 123
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=42.77 E-value=6.6 Score=35.29 Aligned_cols=43 Identities=30% Similarity=0.599 Sum_probs=24.2
Q ss_pred ccccccccccCCCceeee-CCCCccChhhHHHHHhc-----CCCCcccCc
Q 016797 233 ECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL-----NVKCPRCRC 276 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 276 (382)
.|.+|...-..+ ....- .|...||..|+.+=+.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588887643211 22222 38889999999865542 124999964
No 124
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=42.60 E-value=23 Score=28.89 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=29.4
Q ss_pred CCCccccccccccccCCCceeee-CCCCccChhhHHHHH------h-----cCCCCcccCc
Q 016797 228 PTDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWL------R-----LNVKCPRCRC 276 (382)
Q Consensus 228 ~~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl------~-----~~~~CP~CR~ 276 (382)
+..++.|.+|.+.= +...- .|-..||..|+.+-+ + ..=.|+.|+.
T Consensus 54 Dg~~~~C~vC~dGG----~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG----NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCS----EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCC----eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34456899998652 22222 388899999999753 1 1125999964
No 125
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=40.82 E-value=6.4 Score=39.58 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=28.4
Q ss_pred ccccccccccCCCceeeeC-CCCccChhhHHHHHh-----cCCCCcccCcc
Q 016797 233 ECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLR-----LNVKCPRCRCS 277 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~ 277 (382)
..++|...+..+...+... |.--||..|+.---. .+-.||.|+..
T Consensus 38 ~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3449988764333444433 888899999843211 23459999864
No 126
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=40.53 E-value=4.5 Score=30.03 Aligned_cols=41 Identities=34% Similarity=0.696 Sum_probs=24.8
Q ss_pred ccccccccccCCCceeee---CCCCccChhhHHHHHhcC-----CCCcccCc
Q 016797 233 ECPICLEEFHVGNEVRGL---PCAHNFHIECIDEWLRLN-----VKCPRCRC 276 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~l---pC~H~Fh~~Ci~~wl~~~-----~~CP~CR~ 276 (382)
.|.+|...-. .-..+ .|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d---~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD---PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC---GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC---CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4666765432 22233 277889999998655431 25888874
No 127
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=39.82 E-value=5.2 Score=29.01 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=28.6
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHHHH----hcCCCCcccCcc
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWL----RLNVKCPRCRCS 277 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl----~~~~~CP~CR~~ 277 (382)
...| ||......++..+.- .|..-||..|+.--- .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3468 798876444333333 388889999975321 123459999754
No 128
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=39.66 E-value=5.9 Score=31.18 Aligned_cols=27 Identities=19% Similarity=0.620 Sum_probs=17.0
Q ss_pred eeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797 247 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278 (382)
Q Consensus 247 ~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i 278 (382)
+....||+.|. .=+.....||.|++.-
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 34456999982 1123456799999754
No 129
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.77 E-value=7 Score=28.91 Aligned_cols=43 Identities=26% Similarity=0.559 Sum_probs=26.6
Q ss_pred ccccccccccCCCceeee-CCCCccChhhHHHHHhc-----CCCCcccCc
Q 016797 233 ECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL-----NVKCPRCRC 276 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 276 (382)
.|.||...-.. .....- .|...||..|+.+=+.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 78889864322 222222 38889999999854432 124888863
No 130
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=37.87 E-value=6.7 Score=28.38 Aligned_cols=43 Identities=30% Similarity=0.617 Sum_probs=25.3
Q ss_pred ccccccccccCCCceeee-CCCCccChhhHHHHHhc-----CCCCcccCc
Q 016797 233 ECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL-----NVKCPRCRC 276 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 276 (382)
.|.||...-. +.....- .|...||..|+.+=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5667775422 1122222 27889999999854432 224888864
No 131
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=37.22 E-value=7.1 Score=38.04 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred ccccccccccccCCCcee-eeCCCCccChhhHHHHH
Q 016797 231 CSECPICLEEFHVGNEVR-GLPCAHNFHIECIDEWL 265 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~-~lpC~H~Fh~~Ci~~wl 265 (382)
...|.+|...|....... .-.||++||..|....+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 357999999886432222 23499999999987654
No 132
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.07 E-value=14 Score=27.10 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=28.1
Q ss_pred ccccccccccccCCCceeee--CCCCccChhhHHHHHh---------cCCCCcccCccC
Q 016797 231 CSECPICLEEFHVGNEVRGL--PCAHNFHIECIDEWLR---------LNVKCPRCRCSV 278 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~wl~---------~~~~CP~CR~~i 278 (382)
...| ||......+.-+.-= .|..-||..|+.---. .+..||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 3467 898874333222222 4888999999843211 244699997543
No 133
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=37.04 E-value=27 Score=33.69 Aligned_cols=47 Identities=17% Similarity=0.412 Sum_probs=29.8
Q ss_pred cccccccccccCCCceeeeCCCCccChhh--HHHHHhc--CCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIEC--IDEWLRL--NVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~C--i~~wl~~--~~~CP~CR~~i~~ 280 (382)
..|++-...+. ...+...|.|.-|.+- +.....+ .-.||+|...+..
T Consensus 250 L~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 57998888877 2445556999855554 2222222 3359999877654
No 134
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=35.07 E-value=30 Score=33.21 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=29.8
Q ss_pred cccccccccccCCCceeeeCCCCccChhh--HHHHHhc--CCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIEC--IDEWLRL--NVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~C--i~~wl~~--~~~CP~CR~~i~~ 280 (382)
..|++-...+. ...+...|.|.-|.+- .-....+ .-.||+|...+..
T Consensus 216 L~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 57998888877 2445556999855543 2222222 2359999987754
No 135
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=34.69 E-value=15 Score=28.56 Aligned_cols=12 Identities=33% Similarity=1.088 Sum_probs=10.7
Q ss_pred ccChhhHHHHHh
Q 016797 255 NFHIECIDEWLR 266 (382)
Q Consensus 255 ~Fh~~Ci~~wl~ 266 (382)
.||..|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 136
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=34.63 E-value=15 Score=28.50 Aligned_cols=12 Identities=33% Similarity=1.057 Sum_probs=10.7
Q ss_pred ccChhhHHHHHh
Q 016797 255 NFHIECIDEWLR 266 (382)
Q Consensus 255 ~Fh~~Ci~~wl~ 266 (382)
.||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 137
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=33.45 E-value=9.9 Score=27.31 Aligned_cols=44 Identities=23% Similarity=0.574 Sum_probs=27.1
Q ss_pred ccccccccccccCCCceeee-CCCCccChhhHHHHHh---cCCCCcccCc
Q 016797 231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR---LNVKCPRCRC 276 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~---~~~~CP~CR~ 276 (382)
...| ||..... ++..+.- .|..-||..|+.---. ....||.|+.
T Consensus 19 ~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3567 9988654 3323332 3888899999753221 2345888864
No 138
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.91 E-value=26 Score=24.89 Aligned_cols=39 Identities=31% Similarity=0.736 Sum_probs=29.5
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|+.|.+.+..++.+ ..-+..||..| ..|..|+..+..
T Consensus 10 ~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKV--SSLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEE--EETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEE--EECCeEeeCCC--------CCCCCCCCccCC
Confidence 5799999998755543 34578899988 479999887753
No 139
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=32.52 E-value=19 Score=28.11 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=31.5
Q ss_pred cccccccccccCCCceeee--CCCCccChhhHHHHH---h-------cCCCCcccCccC
Q 016797 232 SECPICLEEFHVGNEVRGL--PCAHNFHIECIDEWL---R-------LNVKCPRCRCSV 278 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~wl---~-------~~~~CP~CR~~i 278 (382)
..|.||...+..+...+.- .|..-||..|+.--- + .+-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 5799999998655444444 478889999973211 0 234599998643
No 140
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=32.09 E-value=19 Score=25.63 Aligned_cols=37 Identities=27% Similarity=0.733 Sum_probs=19.6
Q ss_pred ccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
.|+.|.+.+..++.+. .-+..||..| ..|..|+.++.
T Consensus 2 ~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVT--SLGKDWHRPC--------LKCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEE--ETTEEEETTT--------CBCTTTCCBCC
T ss_pred cCCCCCCEEECceEEE--ECCccccCCC--------CCccccCccCC
Confidence 3666666654333222 2266666666 35666665554
No 141
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.34 E-value=31 Score=25.49 Aligned_cols=39 Identities=18% Similarity=0.413 Sum_probs=29.0
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
...|+.|.+.+. + .....-+..||..| ..|-.|+..+..
T Consensus 25 ~~~C~~C~~~I~-~--~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-G--PFLVALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-S--CEEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-c--eEEEECCccccccC--------CccCCCCCCCCC
Confidence 368999999885 2 23344688999988 479999887753
No 142
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=30.65 E-value=9.9 Score=26.54 Aligned_cols=40 Identities=35% Similarity=0.827 Sum_probs=23.4
Q ss_pred cccccccccccCCCceeee-C--CC-CccChhhHHHHHhc----CCCCcccCc
Q 016797 232 SECPICLEEFHVGNEVRGL-P--CA-HNFHIECIDEWLRL----NVKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~ 276 (382)
..| ||..... + ....- . |. ..||..|+. +.. +-.||.|+.
T Consensus 11 ~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 456 8988642 2 22221 2 44 579999986 332 234998864
No 143
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.65 E-value=45 Score=23.97 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=29.1
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
...|+-|.+.+. ++ ....-+..||..| .+|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQ--PLIFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SC--CCCCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ce--EEEECcceeCCCC--------CEeCCCCCccCCC
Confidence 367999999887 22 2334678899888 4799998887643
No 144
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=30.43 E-value=11 Score=26.35 Aligned_cols=40 Identities=38% Similarity=0.844 Sum_probs=23.9
Q ss_pred cccccccccccCCCceeee-C--CC-CccChhhHHHHHhc----CCCCcccCc
Q 016797 232 SECPICLEEFHVGNEVRGL-P--CA-HNFHIECIDEWLRL----NVKCPRCRC 276 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~ 276 (382)
..| ||.+... + ..+.- . |. ..||..|+. +.. +-.||.|+.
T Consensus 10 ~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 456 9988642 2 22221 2 55 589999986 332 235999964
No 145
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.18 E-value=10 Score=28.69 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=30.8
Q ss_pred ccccccccccccCC-CceeeeC-CCCccChhhHHHHHhc--------CCCCcccCccC
Q 016797 231 CSECPICLEEFHVG-NEVRGLP-CAHNFHIECIDEWLRL--------NVKCPRCRCSV 278 (382)
Q Consensus 231 ~~~C~IC~~~~~~~-~~~~~lp-C~H~Fh~~Ci~~wl~~--------~~~CP~CR~~i 278 (382)
+..|.||...-... .....-. |...||..|+.+-+.. .=.|+.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 35899999764321 2233333 8889999999865431 22499997644
No 146
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=28.96 E-value=9.3 Score=29.97 Aligned_cols=43 Identities=21% Similarity=0.532 Sum_probs=25.8
Q ss_pred ccccccccccCCCceeee-CCCCccChhhHHHHHhc----CCCCcccCc
Q 016797 233 ECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL----NVKCPRCRC 276 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~----~~~CP~CR~ 276 (382)
.|.+|...-.. +....- .|...||..|+.+-+.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 57777765331 122222 37889999999765443 224888864
No 147
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.36 E-value=48 Score=23.98 Aligned_cols=39 Identities=28% Similarity=0.665 Sum_probs=28.9
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
...|+-|.+.+..++.+. .-+..+|..| ..|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL--ALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE--ETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEE--ECCccccccc--------CCcCcCCCCcC
Confidence 357999999887554433 3577899988 47999987774
No 148
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.53 E-value=53 Score=24.08 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=29.2
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
...|.-|.+.+.. .....-+..||..| ..|-.|+..+..
T Consensus 25 ~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG---AVVKARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS---CCEESSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecc---cEEEECCceECccC--------CEecCCCCCCCC
Confidence 3579999998873 23344778899998 479999887754
No 149
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.43 E-value=32 Score=24.69 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=27.8
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i 278 (382)
...|+-|.+.+.. .....-+..||..|. +|-.|+..+
T Consensus 15 ~~~C~~C~~~I~~---~~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVG---VFVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCS---SCEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCccccCCCCccC---cEEEECcceeCcCcC--------eeCCCCCCC
Confidence 3589999998873 234446889999884 798998766
No 150
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.14 E-value=64 Score=22.40 Aligned_cols=40 Identities=23% Similarity=0.480 Sum_probs=28.7
Q ss_pred cccccccccccC-CCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHV-GNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
..|+-|.+.+.. +++.....-+..+|..| .+|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 579999998874 12233334688899988 47999987774
No 151
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.70 E-value=77 Score=22.85 Aligned_cols=40 Identities=28% Similarity=0.693 Sum_probs=29.2
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
...|+.|.+.+...+... .-+..||..| .+|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCC
Confidence 368999999886444332 3578899998 479999877754
No 152
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=26.38 E-value=79 Score=22.57 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=6.7
Q ss_pred eehhhHHHHHHHHHHHH
Q 016797 123 WGFLIWLLFSYCGLLCI 139 (382)
Q Consensus 123 w~~ii~l~~~~~~~i~i 139 (382)
|..++.++-+.++++.+
T Consensus 7 ~p~~LivlGg~~~lll~ 23 (70)
T 2klu_A 7 GSMALIVLGGVAGLLLF 23 (70)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHH
Confidence 33344223344444433
No 153
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.89 E-value=42 Score=23.98 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=23.5
Q ss_pred ccccccccccccCCCceeeeCC-CCccChhhHHHH
Q 016797 231 CSECPICLEEFHVGNEVRGLPC-AHNFHIECIDEW 264 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC-~H~Fh~~Ci~~w 264 (382)
..-|.||.++- ..+-+.| +-.||..|.+..
T Consensus 8 ~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 35799999983 5777779 779999997663
No 154
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.64 E-value=44 Score=23.18 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=27.9
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~ 281 (382)
..|..|.+.+. + .....-+..||..| .+|-.|+..+...
T Consensus 6 ~~C~~C~~~I~-~--~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFII-G--RVIKAMNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCC-S--CCEEETTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CcCccCCCEec-c--eEEEECcccccccC--------CEeCCCCCcCCCC
Confidence 57999998876 2 22334578899988 3799998777543
No 155
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.60 E-value=53 Score=23.51 Aligned_cols=40 Identities=18% Similarity=0.503 Sum_probs=29.2
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|+.|.+.+..++... ..-+..||..| .+|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEE-EECcccccccc--------CchhhCCCccCC
Confidence 57999999887554432 33578899888 479999877754
No 156
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.49 E-value=49 Score=22.88 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=27.3
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
..|+.|.+.+.. + ....-+..||..| .+|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-G--GVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-S--EEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeecc-c--eEEECccccCCCC--------CccCCCCCcCC
Confidence 579999998862 2 2344688899888 47999987774
No 157
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.41 E-value=28 Score=20.65 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=18.1
Q ss_pred cccccccccccCCCceeeeCCCCccChhh
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIEC 260 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~C 260 (382)
..|+.|.......+.. ..-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV--NCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCC--CSSSSCCCGGG
T ss_pred CcCCccCCEEecceeE--EECCeEecccC
Confidence 4789998887643332 23477888887
No 158
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.22 E-value=51 Score=22.87 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=28.7
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|+-|.+.+..++.. ...-+..||..| .+|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCCC
Confidence 5799999988743332 333678899988 479999877754
No 159
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.51 E-value=44 Score=22.87 Aligned_cols=38 Identities=18% Similarity=0.484 Sum_probs=28.1
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|+.|.+.+. ++ ....-+..||..| ..|-.|+.++..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCCCC
Confidence 57999999887 32 3344678899988 479999877753
No 160
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=24.26 E-value=39 Score=28.30 Aligned_cols=46 Identities=17% Similarity=0.440 Sum_probs=30.2
Q ss_pred CccccccccccccC--CCceeeeCCCCccChhhHHHHHhcCC--CCcccCc
Q 016797 230 DCSECPICLEEFHV--GNEVRGLPCAHNFHIECIDEWLRLNV--KCPRCRC 276 (382)
Q Consensus 230 ~~~~C~IC~~~~~~--~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~ 276 (382)
++..|.+|...|.. +....-..|+|.+|..|- .|..... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 46799999998743 223344459999999996 2332222 2888865
No 161
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.64 E-value=68 Score=22.21 Aligned_cols=39 Identities=26% Similarity=0.534 Sum_probs=27.2
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
..|+.|.+.+...+ .....-+..||..| ..|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDG-AGVVALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSS-CCEECSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCc-eEEEECCCeEcccC--------CcccccCCcCC
Confidence 57999988776422 23334578899888 47888987774
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.96 E-value=48 Score=23.49 Aligned_cols=40 Identities=23% Similarity=0.435 Sum_probs=28.7
Q ss_pred cccccccccccC-CCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHV-GNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
..|+.|.+.+.. ++......-+..||..| ..|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 579999998873 12233344678899998 47999987775
No 163
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=22.58 E-value=12 Score=29.69 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=27.5
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCC----CCcccCcc
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCS 277 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 277 (382)
..|.||...-..++-..--.|...||..|+.+=+.... .||.|+..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 36888877533222222223888999999886443322 38888643
No 164
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.45 E-value=46 Score=26.18 Aligned_cols=37 Identities=22% Similarity=0.517 Sum_probs=22.8
Q ss_pred ccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278 (382)
Q Consensus 233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i 278 (382)
.|+.|...+...+.... .-++.||..| ..|-.|+..+
T Consensus 10 ~C~~C~~~I~~~e~~~~-a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR-VKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC-CSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEE-ECCccccccc--------CccccCCCCC
Confidence 68888777664332221 2466777777 3677777666
No 165
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.11 E-value=61 Score=22.43 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=28.3
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|+.|.+.+..++... ..-+..||..| ..|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEE-EECcCeecccC--------CcccccCCccCC
Confidence 57999999887543332 23577899888 478899877653
No 166
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.86 E-value=80 Score=22.12 Aligned_cols=41 Identities=17% Similarity=0.442 Sum_probs=28.8
Q ss_pred ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
...|+-|.+.+..++... ..-+..||..| .+|-.|+.++..
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEE-EeCccEecccc--------CeECCCCCCCCC
Confidence 368999999886444432 23577899888 478889877643
No 167
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.75 E-value=48 Score=23.43 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=27.3
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~ 279 (382)
..|+-|...+.. .....-+..||..| .+|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~---~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG---RVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS---CCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC---eeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 479999988762 23334678899988 47999988775
No 168
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.24 E-value=8.6 Score=28.48 Aligned_cols=15 Identities=27% Similarity=0.693 Sum_probs=12.9
Q ss_pred CCCCccChhhHHHHH
Q 016797 251 PCAHNFHIECIDEWL 265 (382)
Q Consensus 251 pC~H~Fh~~Ci~~wl 265 (382)
.|+|.||..|...|=
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 589999999988873
No 169
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.38 E-value=76 Score=24.82 Aligned_cols=49 Identities=4% Similarity=-0.181 Sum_probs=33.2
Q ss_pred cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280 (382)
Q Consensus 232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~ 280 (382)
..|..|...+..........=|..||..|..+-+..+..|-.|...|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4788888777521122333457788999988766655589999888864
Done!