BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016798
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 213/378 (56%), Gaps = 4/378 (1%)
Query: 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFV 62
T M S LSL+ +V P +A I+++ +R RKIS+ ++ +++ ++L V
Sbjct: 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVV 217
Query: 63 KANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALF-IXXXXXXXXXXX 121
+ + E RF ++++S + +K +++ +Q+I ALF +
Sbjct: 218 LSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRA 277
Query: 122 XFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL 181
+ +++ ++ P++ + +EF++G A + LF L +++
Sbjct: 278 ELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE--RDNGKYEA 335
Query: 182 DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
+ +NG+V +++F Y L ++ I G+TVAL+G SG GKST+A L R YD
Sbjct: 336 ERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
SG I +D HDV++ +L +LRRH LVSQ++ LF+ T+A NI Y + E++E A
Sbjct: 396 DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA-AEGEYTREQIEQAA 454
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
R A+A EF+ +PQG +T IG G+SLSGGQRQR+AIARAL +++ VLILDEATSALD+
Sbjct: 455 RQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
Query: 362 SELLVRQAVDRLLGHHTV 379
SE ++ A+D L + TV
Sbjct: 515 SERAIQAALDELQKNKTV 532
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 196/370 (52%), Gaps = 3/370 (0%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M + L+L + + P L + RLRK++++ ++A + +L+E + I VK+
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKS 215
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIY-FGALFIXXXXXXXXXXXXF 123
E E+ F + + L LK + A + + G + +
Sbjct: 216 FAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSI 275
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
+L +F+ L + P++ + ++ Q +++R+F L + A ++
Sbjct: 276 TVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEI 335
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
G + ++SF+Y DN +L +NL I GETVA +G SGGGKSTL L+ R YD S
Sbjct: 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G IL+D H++++ SLR +GLV QD LFS TV ENI T D E VE A+
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI-LLGRPTATDEEVVE-AAKM 453
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
ANA +F+ LPQGY+T +G RG LSGGQ+QRL+IAR N +LILDEATSALD SE
Sbjct: 454 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513
Query: 364 LLVRQAVDRL 373
++++A+D L
Sbjct: 514 SIIQEALDVL 523
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 213/393 (54%), Gaps = 28/393 (7%)
Query: 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFV 62
+ M +SP L+ V+P ++++ G LRK++K + S+A + E + + V
Sbjct: 155 SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTV 214
Query: 63 KANNAEMCESARF-RRLAHSDLCELLKKRKMK--ALIPQT--------VQLIYFGALFIX 111
+A EM E ++ ++ H + +L +K T + ++Y G L +
Sbjct: 215 RAFGKEMTEIEKYASKVDH--VMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMG 272
Query: 112 XXXXXXXXXXXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK 171
L SF+ ++ I G+ Y+E +G A RL++L + + K
Sbjct: 273 SAHMTV--------GELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPK 324
Query: 172 VIEKPDAVSLDH--INGDVKFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGG 227
+ + V L+ G ++F N+ F Y +P+ D +L I +G AL+GPSG G
Sbjct: 325 -LPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQD-FSLSIPSGSVTALVGPSGSG 382
Query: 228 KSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-R 286
KST+ LLLRLYDP SG I +D HD++ + LR +G VSQ+ LFS ++AENI Y
Sbjct: 383 KSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA 442
Query: 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346
D + + E ++ A ANA F+R PQG+NT +G +G LSGGQ+QR+AIARAL +N
Sbjct: 443 DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP 502
Query: 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
+L+LDEATSALD+ +E LV++A+DRL+ TV
Sbjct: 503 KILLLDEATSALDAENEYLVQEALDRLMDGRTV 535
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/392 (34%), Positives = 212/392 (54%), Gaps = 26/392 (6%)
Query: 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFV 62
+ M +SP L+ V+P ++++ G LRK++K + S+A + E + + V
Sbjct: 186 SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTV 245
Query: 63 KANNAEMCESARF-RRLAHSDLCELLKKRKMKALIPQTVQLIYFGA---------LFIXX 112
+A EM E ++ ++ H + +L +K + +FGA L +
Sbjct: 246 RAFGKEMTEIEKYASKVDH--VMQLARKEAF-------ARAGFFGATGLSGNLIVLSVLY 296
Query: 113 XXXXXXXXXXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV 172
L SF+ ++ I G+ Y+E +G A RL++L + + K
Sbjct: 297 KGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPK- 355
Query: 173 IEKPDAVSLDH--INGDVKFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGK 228
+ + V L+ G ++F N+ F Y +P+ D +L I +G AL+GPSG GK
Sbjct: 356 LPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQD-FSLSIPSGSVTALVGPSGSGK 414
Query: 229 STLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RD 287
ST+ LLLRLYDP SG I +D HD++ + LR +G VSQ+ LFS ++AENI Y D
Sbjct: 415 STVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 474
Query: 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347
+ + E ++ A ANA F+R PQG+NT +G +G LSGGQ+QR+AIARAL +N
Sbjct: 475 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 534
Query: 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
+L+LDEATSALD+ +E LV++A+DRL+ TV
Sbjct: 535 ILLLDEATSALDAENEYLVQEALDRLMDGRTV 566
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 203/375 (54%), Gaps = 4/375 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M S LS+I ++ P +++ I + +R R ISK ++ ++ ++L V
Sbjct: 160 MFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLI 219
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FIXXXXXXXXXXXXF 123
+ E+ RF ++++ + +K ++ +QLI AL F+
Sbjct: 220 FGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSL 279
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
++ +S++ ++ P++ + +F++G A + LF + + + E + D
Sbjct: 280 TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVI--DR 337
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
GD++F N++F Y L +NL I AG+TVAL+G SG GKST+A L+ R YD
Sbjct: 338 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G IL+D HD++ L SLR V LVSQ++ LF+ TVA NI Y + E++E AR
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR-TEEYSREQIEEAARM 456
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A A +F+ + G +T IG G LSGGQRQR+AIARAL ++S +LILDEATSALD+ SE
Sbjct: 457 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 364 LLVRQAVDRLLGHHT 378
++ A+D L + T
Sbjct: 517 RAIQAALDELQKNRT 531
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 203/375 (54%), Gaps = 4/375 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M S LS+I ++ P +++ I + +R R ISK ++ ++ ++L V
Sbjct: 160 MFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLI 219
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FIXXXXXXXXXXXXF 123
+ E+ RF ++++ + +K ++ +QLI AL F+
Sbjct: 220 FGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSL 279
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
++ +S++ ++ P++ + +F++G A + LF + + + E + +
Sbjct: 280 TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVI--ER 337
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
GDV+F N++F Y L +NL I AG+TVAL+G SG GKST+A L+ R YD
Sbjct: 338 ATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G IL+D HD++ L SLR V LVSQ++ LF+ TVA NI Y + E++E AR
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR-TEQYSREQIEEAARM 456
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A A +F+ + G +T IG G LSGGQRQR+AIARAL ++S +LILDEATSALD+ SE
Sbjct: 457 AYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 364 LLVRQAVDRLLGHHT 378
++ A+D L + T
Sbjct: 517 RAIQAALDELQKNRT 531
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 193/375 (51%), Gaps = 5/375 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M ++ +LSL++ ++P L+ + + RK ++ + L+ + E + + +K
Sbjct: 172 MFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKL 231
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIY-FGALFIXXXXXXXXXXXXF 123
E E +F R+ S K + ++P + ++ G I
Sbjct: 232 FTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDII 291
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
++ +FI P+ + +N + + ER+F++ + + + PDAV L
Sbjct: 292 TVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK-DDPDAVELRE 350
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
+ G+++F N+ F Y P VL + HI+ G+ VAL+GP+G GK+T+ LL+R YD
Sbjct: 351 VRGEIEFKNVWFSYDKKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G ILVD D++ I+ SLR +G+V QD LFS TV EN+ Y + E ++ A+
Sbjct: 410 GQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN--PGATDEEIKEAAKL 467
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
++D F++ LP+GY T + G LS GQRQ LAI RA N +LILDEATS +D+++E
Sbjct: 468 THSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527
Query: 364 LLVRQAVDRLLGHHT 378
++ A+ +L+ T
Sbjct: 528 KSIQAAMWKLMEGKT 542
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 150/231 (64%), Gaps = 19/231 (8%)
Query: 146 GKAYNEFK--QGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPL 203
G AY FK +P+I+ SK KPD +I G+++F NI F Y +
Sbjct: 356 GAAYEVFKIIDNKPSIDSF-------SKSGHKPD-----NIQGNLEFKNIHFSYPSRKEV 403
Query: 204 -VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262
+L LNL +++G+TVAL+G SG GKST +L+ RLYDPL G + +D D++ I + LR
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 263 RHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
+G+VSQ+ LF+ T+AENI Y R+ +T M+ +E + ANA +F+ LP ++T +
Sbjct: 464 EIIGVVSQEPVLFATTIAENIRYGREDVT---MDEIEKAVKEANAYDFIMKLPHQFDTLV 520
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372
G RG+ LSGGQ+QR+AIARAL +N +L+LDEATSALD+ SE +V+ A+D+
Sbjct: 521 GERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 130/192 (67%), Gaps = 1/192 (0%)
Query: 182 DHINGDVKFCNISFKYADNMPL-VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
+ + G+V+F + F Y + VL L+L ++ G+T+AL+G SG GKST+ +LL R YD
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P++G + +D +++ + + LR +G+VSQ+ LF ++AENI Y D + E +
Sbjct: 1085 PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRA 1144
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ AN +F+ +LP YNT +G +G+ LSGGQ+QR+AIARAL + +L+LDEATSALD+
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Query: 361 RSELLVRQAVDR 372
SE +V++A+D+
Sbjct: 1205 ESEKVVQEALDK 1216
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 150/231 (64%), Gaps = 19/231 (8%)
Query: 146 GKAYNEFK--QGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPL 203
G AY FK +P+I+ SK KPD +I G+++F NI F Y +
Sbjct: 356 GAAYEVFKIIDNKPSIDSF-------SKSGHKPD-----NIQGNLEFKNIHFSYPSRKEV 403
Query: 204 -VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262
+L LNL +++G+TVAL+G SG GKST +L+ RLYDPL G + +D D++ I + LR
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 263 RHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
+G+VSQ+ LF+ T+AENI Y R+ +T M+ +E + ANA +F+ LP ++T +
Sbjct: 464 EIIGVVSQEPVLFATTIAENIRYGREDVT---MDEIEKAVKEANAYDFIMKLPHQFDTLV 520
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372
G RG+ LSGGQ+QR+AIARAL +N +L+LDEATSALD+ SE +V+ A+D+
Sbjct: 521 GERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 130/192 (67%), Gaps = 1/192 (0%)
Query: 182 DHINGDVKFCNISFKYADNMPL-VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
+ + G+V+F + F Y + VL L+L ++ G+T+AL+G SG GKST+ +LL R YD
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P++G + +D +++ + + LR +G+VSQ+ LF ++AENI Y D + E +
Sbjct: 1085 PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRA 1144
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ AN +F+ +LP YNT +G +G+ LSGGQ+QR+AIARAL + +L+LDEATSALD+
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Query: 361 RSELLVRQAVDR 372
SE +V++A+D+
Sbjct: 1205 ESEKVVQEALDK 1216
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/193 (50%), Positives = 136/193 (70%), Gaps = 9/193 (4%)
Query: 184 INGDVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
I GD+ N+ F Y ++P +L +NL + AG+TVAL+G SG GKST+ LLLR YD
Sbjct: 412 IKGDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
L G I +D DV++I L+ LR++V +VSQ+ LF+ T+ ENI + K + R E A
Sbjct: 471 LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS----LGKEGITREEMVA 526
Query: 302 --RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ ANA++F++TLP GYNT +G RG+ LSGGQ+QR+AIARAL +N +L+LDEATSALD
Sbjct: 527 ACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 586
Query: 360 SRSELLVRQAVDR 372
+ SE +V+QA+D+
Sbjct: 587 AESEGIVQQALDK 599
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 133/205 (64%), Gaps = 5/205 (2%)
Query: 173 IEKPDAVSL----DHINGDVKFCNISFKYADNMPL-VLDQLNLHIRAGETVALIGPSGGG 227
I K D++SL + G V F N+ F Y + + +L L+ + G+T+AL+GPSG G
Sbjct: 1058 ISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCG 1117
Query: 228 KSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD 287
KST+ LL R YD L G I +D +++ + + R + +VSQ+ TLF ++AENI Y
Sbjct: 1118 KSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGL 1177
Query: 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347
+ + M +VE AR AN F+ LP+G+ T +G RG+ LSGGQ+QR+AIARAL +N
Sbjct: 1178 DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPK 1237
Query: 348 VLILDEATSALDSRSELLVRQAVDR 372
+L+LDEATSALD+ SE +V++A+DR
Sbjct: 1238 ILLLDEATSALDTESEKVVQEALDR 1262
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 137/221 (61%), Gaps = 3/221 (1%)
Query: 159 IERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETV 218
+E +FDL K +++V + P A L G ++F N+ F YAD + D ++ + G+T+
Sbjct: 25 MENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQD-VSFTVMPGQTL 83
Query: 219 ALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGT 278
AL+GPSG GKST+ +LL R YD SGCI +D D+ + SLR H+G+V QD LF+ T
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338
+A+NI Y + D VE A+ A + + P+GY T +G RG LSGG++QR+AI
Sbjct: 144 IADNIRYGRVTAGND--EVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAI 201
Query: 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
AR + + +++LDEATSALD+ +E ++ ++ ++ + T
Sbjct: 202 ARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTT 242
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 189/364 (51%), Gaps = 25/364 (6%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
LS + +IP + L+ +L ++ + ++ S ++ + E L + V+A E E
Sbjct: 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYE 224
Query: 72 SARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFG-ALFIXXXXXXXXXXXXFDGC---- 126
+ FR+ S ++ I LI F LFI F G
Sbjct: 225 NENFRKANES----------LRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRN 274
Query: 127 ------SLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
S++++ L+ ++ + +G N + + +R+ ++ K + E +A++
Sbjct: 275 NQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALA 334
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L ++ G V F N+ F+Y +N VL +N ++ G VA++G +G GKSTL L+ RL D
Sbjct: 335 LPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEH 299
P G + VD+ DV+ ++L LR H+ V Q+ LFSGT+ EN+ + R+ T D E VE
Sbjct: 395 PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDAT--DDEIVE- 451
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A+ A +F+ +LP+GY++ + G + SGGQ+QRL+IARAL + VLILD+ TS++D
Sbjct: 452 AAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Query: 360 SRSE 363
+E
Sbjct: 512 PITE 515
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D+ F NI F+Y + P++LD +NL I+ GE + ++G SG GKSTL KL+ R Y P +G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D HD+ + LRR VG+V QD L + ++ +NI + + +E+V + A+ A A
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGA 118
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 367 RQAVDRLLGHHTV 379
+ + ++ TV
Sbjct: 179 MRNMHKICKGRTV 191
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D+ F NI F+Y + P++LD +NL I+ GE + ++G SG GKSTL KL+ R Y P +G +
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D HD+ + LRR VG+V QD L + ++ +NI + + +E+V + A+ A A
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGA 124
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 367 RQAVDRLLGHHTV 379
+ + ++ TV
Sbjct: 185 MRNMHKICKGRTV 197
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D+ F NI F+Y + P++LD +NL I+ GE + ++G SG GKSTL KL+ R Y P +G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D HD+ + LRR VG+V QD L + ++ +NI + + +E+V + A+ A A
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGA 118
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 367 RQAVDRLLGHHTV 379
+ + ++ TV
Sbjct: 179 MRNMHKICKGRTV 191
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D+ F NI F+Y + P++LD +NL I+ GE + ++G SG GKSTL KL+ R Y P +G +
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D HD+ + LRR VG+V QD L + ++ +NI + + +E+V + A+ A A
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGA 124
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 367 RQAVDRLLGHHTV 379
+ + ++ TV
Sbjct: 185 MRNMHKICKGRTV 197
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D+ F NI F+Y + P++LD +NL I+ GE + ++G SG GKSTL KL+ R Y P +G +
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 62
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D HD+ + LRR VG+V QD L + ++ +NI + + +E+V + A+ A A
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGA 120
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD SE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 367 RQAVDRLLGHHTV 379
+ + ++ TV
Sbjct: 181 MRNMHKICKGRTV 193
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D+ F NI F+Y + P++LD +NL I+ GE + ++G SG GKSTL KL+ R Y P +G +
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D HD+ + LRR VG+V QD L + ++ +NI + + +E+V + A+ A A
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGA 124
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI D+ATSALD SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 367 RQAVDRLLGHHTV 379
+ + ++ TV
Sbjct: 185 MRNMHKICKGRTV 197
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D+ F NI F+Y + P++LD +NL I+ GE + ++G +G GKSTL KL+ R Y P +G +
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQV 62
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D HD+ + LRR VG+V QD L + ++ +NI + + +E+V + A+ A A
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGA 120
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD SE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 367 RQAVDRLLGHHTV 379
+ + ++ TV
Sbjct: 181 MRNMHKICKGRTV 193
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 112/188 (59%), Gaps = 4/188 (2%)
Query: 183 HINGDVKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
H+ G V+F ++SF Y N P LVL L +R GE AL+GP+G GKST+A LL LY
Sbjct: 10 HLEGLVQFQDVSFAYP-NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 68
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P G +L+D + L R V V Q+ +F ++ ENI Y L K ME +
Sbjct: 69 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAY-GLTQKPTMEEITAA 127
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A + A F+ LPQGY+T + GS LSGGQRQ +A+ARAL + VLILD+ATSALD+
Sbjct: 128 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 187
Query: 361 RSELLVRQ 368
S+L V Q
Sbjct: 188 NSQLQVEQ 195
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 112/188 (59%), Gaps = 2/188 (1%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ F Y D+ ++ D ++ + +A GPSGGGKST+ LL R Y P +G I +D
Sbjct: 6 HVDFAYDDSEQILRD-ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
+ NI L++ R +G VSQD + +GT+ EN+ Y L E + A A FV
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTY-GLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
+P NT +G RG +SGGQRQRLAIARA +N +L+LDEAT++LDS SE +V++A+D
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 372 RLLGHHTV 379
L+ T
Sbjct: 184 SLMKGRTT 191
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 119/196 (60%), Gaps = 8/196 (4%)
Query: 187 DVKFCNISFKYADNMP-LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+++F +++F Y L +N I +G T AL+G +G GKST+AKLL R YD G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD 75
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM--ERVEHTART 303
I + +V +S+R +G+V QD LF+ T+ NI L K+D E V ++
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLDATDEEVIKATKS 131
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A +F+ LP+ ++T +G +G LSGG+RQR+AIAR L ++ ++I DEATS+LDS++E
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 364 LLVRQAVDRLLGHHTV 379
L ++AV+ L + T+
Sbjct: 192 YLFQKAVEDLRKNRTL 207
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 110/187 (58%), Gaps = 2/187 (1%)
Query: 183 HINGDVKFCNISFKYADNMPL-VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
++ G VKF ++SF Y ++ + VL L + G+ AL+GP+G GKST+A LL LY P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
G +L+D + L V V Q+ LF + ENI Y L ME + A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVA 130
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ A +F+ PQGY+T +G G+ LSGGQRQ +A+ARAL + +LILD+ATSALD+
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAG 190
Query: 362 SELLVRQ 368
++L V++
Sbjct: 191 NQLRVQR 197
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 109/187 (58%), Gaps = 2/187 (1%)
Query: 183 HINGDVKFCNISFKYADNMPL-VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
++ G VKF ++SF Y ++ + VL L + G+ AL+GP+G GKST+A LL LY P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
G +L+D + L V V Q+ LF + ENI Y L ME + A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVA 130
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ A +F+ PQGY+T +G G+ LSGGQRQ +A+ARAL + +LILD ATSALD+
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 362 SELLVRQ 368
++L V++
Sbjct: 191 NQLRVQR 197
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 2/187 (1%)
Query: 183 HINGDVKFCNISFKYADNMPL-VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
++ G VKF ++SF Y ++ + VL L + G+ AL+GP+G GKST+A LL LY P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
G +L+D + L V V Q+ LF + ENI Y L ME + A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVA 130
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ A +F+ PQGY+T +G G+ L+ GQRQ +A+ARAL + +LILD ATSALD+
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 362 SELLVRQ 368
++L V++
Sbjct: 191 NQLRVQR 197
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 106/201 (52%), Gaps = 23/201 (11%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
++K NI K+ + L+ +NL I+ GE +AL+GPSG GKSTL + +Y P SG I
Sbjct: 3 EIKLENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDME----RVEHTA 301
D+ DV L R+VGLV Q+ L+ TV +NI + + K E +V A
Sbjct: 61 YFDEKDV--TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA 118
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ + D+ + P LSGGQ+QR+AIARAL + VL+LDE S LD+
Sbjct: 119 KMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDAL 167
Query: 362 SELLVRQAVDRL---LGHHTV 379
L VR + RL LG TV
Sbjct: 168 LRLEVRAELKRLQKELGITTV 188
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV--QNIRLDSL 261
VL +N+HIR GE V +IGPSG GKST + L L D G I++D ++ ++ L+ +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
R VG+V Q LF TV NI + + + + A A E + + H
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNI----TLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH 133
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
P SLSGGQ QR+AIARAL +++ DE TSALD
Sbjct: 134 AYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 170
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV--QNIRLDSL 261
VL +N+HIR GE V +IGPSG GKST + L L D G I++D ++ ++ L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
R VG+V Q LF TV NI + + + + A A E + + H
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNI----TLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH 154
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
P SLSGGQ QR+AIARAL +++ DE TSALD
Sbjct: 155 AYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 103/197 (52%), Gaps = 16/197 (8%)
Query: 188 VKFCNIS--FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K NI+ F L+ ++LH+ AG+ +IG SG GKSTL + + L P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 246 ILVDDHDVQNI---RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTA 301
+LVD ++ + L RR +G++ Q L S TV N+ L ++D +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA---LPLELDNTPKDEVK 118
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD-- 359
R E + + G P S+LSGGQ+QR+AIARAL N VL+ DEATSALD
Sbjct: 119 RRVT--ELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 360 -SRSELLVRQAVDRLLG 375
+RS L + + ++R LG
Sbjct: 175 TTRSILELLKDINRRLG 191
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 18/174 (10%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
+D ++ ++ GE VAL+GPSG GK+T +L +Y P SG I DD V +I R
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI--PPKYRE 76
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVE----HTARTANADEFVRTLPQGYNT 319
VG+V Q+ L+ TV ENI + +I + VE AR D + P
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP----- 131
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
+ LSGGQ+QR+A+ARAL + VL+ DE S LD+ +++R + L
Sbjct: 132 ------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 103/197 (52%), Gaps = 16/197 (8%)
Query: 188 VKFCNIS--FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K NI+ F L+ ++LH+ AG+ +IG SG GKSTL + + L P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 246 ILVDDHDVQNI---RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTA 301
+LVD ++ + L RR +G++ Q L S TV N+ L ++D +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA---LPLELDNTPKDEVK 141
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD-- 359
R E + + G P S+LSGGQ+QR+AIARAL N VL+ D+ATSALD
Sbjct: 142 RRVT--ELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 360 -SRSELLVRQAVDRLLG 375
+RS L + + ++R LG
Sbjct: 198 TTRSILELLKDINRRLG 214
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 15/166 (9%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
LD L+L + +GE ++GP+G GK+ +L+ + P SG IL+D DV + L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD--LSPEKHD 73
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKI-DMERVEHTARTANADEFVRTLPQGYNTHIG 322
+ V Q+ +LF V +N+ + M KI D +RV TAR + + P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL------- 126
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368
+LSGG++QR+A+ARAL N +L+LDE SALD R++ R+
Sbjct: 127 ----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 102/197 (51%), Gaps = 16/197 (8%)
Query: 188 VKFCNIS--FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K NI+ F L+ ++LH+ AG+ +IG SG GKSTL + + L P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 246 ILVDDHDVQNI---RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTA 301
+LVD ++ + L RR +G + Q L S TV N+ L ++D +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVA---LPLELDNTPKDEVK 141
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD-- 359
R E + + G P S+LSGGQ+QR+AIARAL N VL+ D+ATSALD
Sbjct: 142 RRVT--ELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 360 -SRSELLVRQAVDRLLG 375
+RS L + + ++R LG
Sbjct: 198 TTRSILELLKDINRRLG 214
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 100/192 (52%), Gaps = 20/192 (10%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+VK N++ ++ + +++LNL I+ GE + L+GPSG GK+T +++ L +P G I
Sbjct: 12 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 69
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA- 304
D DV L R++ +V Q ++ TV ENI + + K + ++ R A
Sbjct: 70 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 127
Query: 305 ---NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+E + P + LSGGQRQR+A+ARA+ VL++DE S LD++
Sbjct: 128 ELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 176
Query: 362 SELLVRQAVDRL 373
+ +R + +L
Sbjct: 177 LRVAMRAEIKKL 188
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 100/192 (52%), Gaps = 20/192 (10%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+VK N++ ++ + +++LNL I+ GE + L+GPSG GK+T +++ L +P G I
Sbjct: 11 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA- 304
D DV L R++ +V Q ++ TV ENI + + K + ++ R A
Sbjct: 69 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 305 ---NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+E + P + LSGGQRQR+A+ARA+ VL++DE S LD++
Sbjct: 127 ELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
Query: 362 SELLVRQAVDRL 373
+ +R + +L
Sbjct: 176 LRVAMRAEIKKL 187
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S + + LD +N++I GE ++GPSG GK+T +++ L P +G + DD
Sbjct: 8 NVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67
Query: 252 DVQN---IRLDSLRRHVGLVSQDITLFSGTVA-ENIGYRDLMTKIDME----RVEHTART 303
V + + + R +G+V Q L+ A ENI + K+ E RVE A+
Sbjct: 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-- 361
+ + P+ LSGGQ+QR+A+ARAL ++ S+L+LDE S LD+R
Sbjct: 128 LDIHHVLNHFPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 362 --SELLVRQAVDRL 373
+ LV++ RL
Sbjct: 177 DSARALVKEVQSRL 190
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 26/201 (12%)
Query: 188 VKFCNIS--FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
VK N++ +K + + L +NL+I+ GE V+++GPSG GKST+ ++ L P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 246 ILVDD---HDVQNIRLDSLRR-HVGLVSQDITLFS-GTVAENI------GYRDLMTKIDM 294
+ +D+ +D+ + L +RR +G V Q L T EN+ YR M+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS---- 117
Query: 295 ERVEHTARTANADEFVR--TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352
R A E ++ L + + H + + LSGGQ+QR+AIARAL N +++ D
Sbjct: 118 ----GEERRKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILAD 170
Query: 353 EATSALDSRSELLVRQAVDRL 373
+ T ALDS++ + Q + +L
Sbjct: 171 QPTWALDSKTGEKIMQLLKKL 191
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 26/201 (12%)
Query: 188 VKFCNIS--FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K N++ +K + + L +NL+I+ GE V+++GPSG GKST+ ++ L P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 246 ILVDD---HDVQNIRLDSLRR-HVGLVSQDITLFS-GTVAENI------GYRDLMTKIDM 294
+ +D+ +D+ + L +RR +G V Q L T EN+ YR M+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS---- 117
Query: 295 ERVEHTARTANADEFVR--TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352
R A E ++ L + + H + + LSGGQ+QR+AIARAL N +++ D
Sbjct: 118 ----GEERRKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILAD 170
Query: 353 EATSALDSRSELLVRQAVDRL 373
+ T ALDS++ + Q + +L
Sbjct: 171 QPTGALDSKTGEKIMQLLKKL 191
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 22/175 (12%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267
++ IR GE V L+GPSG GK+T+ +L+ L P G + + V + L +R+VGL
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD--LPPQKRNVGL 91
Query: 268 VSQDITLFSG-TVAENIGY---RDLMTKIDME-RVEHTARTANADEFVRTLPQGYNTHIG 322
V Q+ LF TV +N+ + + K +M+ RV R + + P
Sbjct: 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH------- 144
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL--LVRQAVDRL 373
LSGGQ+QR+A+ARAL VL+ DE +A+D+ R EL VRQ D +
Sbjct: 145 ----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM 195
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S + + LD +N++I GE ++GPSG GK+T +++ L P +G + DD
Sbjct: 8 NVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67
Query: 252 DVQN---IRLDSLRRHVGLVSQDITLFSGTVA-ENIGYRDLMTKIDME----RVEHTART 303
V + + + R +G+V Q L+ A ENI + K+ E RVE A+
Sbjct: 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-- 361
+ + P+ LSG Q+QR+A+ARAL ++ S+L+LDE S LD+R
Sbjct: 128 LDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 362 --SELLVRQAVDRL 373
+ LV++ RL
Sbjct: 177 DSARALVKEVQSRL 190
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 22/199 (11%)
Query: 188 VKFCNIS--FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K N++ +K + + L +NL+I+ GE V++ GPSG GKST ++ L P G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 246 ILVDD---HDVQNIRLDSLRR-HVGLVSQDITLFSG-TVAENI------GYRDLMTKIDM 294
+ +D+ +D+ + L +RR +G V Q L T EN+ YR +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXS--GE 119
Query: 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354
ER + E L + + H + + LSGGQ+QR+AIARAL N +++ DE
Sbjct: 120 ERRKRALECLKXAE----LEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADEP 172
Query: 355 TSALDSRSELLVRQAVDRL 373
T ALDS++ + Q + +L
Sbjct: 173 TGALDSKTGEKIXQLLKKL 191
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 14/192 (7%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+VK NI ++ D + L+L I+ GE + L+GPSG GK+T + + L +P G I
Sbjct: 6 EVKLINIWKRFGDVT--AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQI 63
Query: 247 LVDDHDV----QNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTA 301
++D+ V + + + R V V Q L+ TV +NI + + K+ + ++
Sbjct: 64 YIEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRV 123
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
R E L G + + LSGGQRQR+A+ RA+ + V + DE S LD++
Sbjct: 124 R-----EVAEXL--GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Query: 362 SELLVRQAVDRL 373
+ R + +L
Sbjct: 177 LRVKXRAELKKL 188
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 4/194 (2%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G + +++ KY + +L+ ++ I G+ V L+G +G GKSTL LRL + G
Sbjct: 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGE 76
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
I +D +I L+ R+ G++ Q + +FSGT +N+ + ++ +V A
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKV---ADEVG 133
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ P + + G LS G +Q + +AR++ + +L+LDE ++ LD + +
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 366 VRQAVDRLLGHHTV 379
+R+ + + TV
Sbjct: 194 IRRTLKQAFADCTV 207
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ N++ + + +V +NL I GE V +GPSG GKSTL +++ L SG +
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTAR 302
+ + + + R VG+V Q L+ +VAEN+ + ++ +RV A
Sbjct: 62 IGEKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 119
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ P+ +LSGGQRQR+AI R L SV +LDE S LD+
Sbjct: 120 VLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 363 ELLVRQAVDRL 373
+ +R + RL
Sbjct: 169 RVQMRIEISRL 179
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ N++ + + +V +NL I GE V +GPSG GKSTL +++ L SG +
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTAR 302
+ + + + R VG+V Q L+ +VAEN+ + ++ +RV A
Sbjct: 62 IGEKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 119
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ P+ +LSGGQRQR+AI R L SV +LDE S LD+
Sbjct: 120 VLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 363 ELLVRQAVDRL 373
+ +R + RL
Sbjct: 169 RVQMRIEISRL 179
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 15/181 (8%)
Query: 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV----QNIRLDSLR 262
+++L ++ GE + L+GPSG GK+T +++ L +P G I + D V + I +
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80
Query: 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
R + +V Q L+ TV +NI + + K+ + ++ R E L G +
Sbjct: 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR-----EVAELL--GLTELL 133
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR---QAVDRLLGHHT 378
+ LSGGQRQR+A+ RA+ + V ++DE S LD++ + +R + + R LG T
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT 193
Query: 379 V 379
+
Sbjct: 194 I 194
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N +F +A + P L+ + I G VA++G G GKS+L LL D + G +
Sbjct: 8 NATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV----- 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
+++ V V Q + + ++ ENI + +++ + +
Sbjct: 63 --------AIKGSVAYVPQQAWIQNDSLRENILFG---CQLEEPYYRSVIQACALLPDLE 111
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
LP G T IG +G +LSGGQ+QR+++ARA+Y N+ + + D+ SA+D+
Sbjct: 112 ILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 18/179 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K +++ Y+D L +N++I+ GE A++G +G GKSTL + + P SG IL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 248 VDDHDVQNIR--LDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTART 303
D+ + R + LR +G+V QD LFS +V +++ + + K+ + +
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 304 A---NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A E ++ P TH LS GQ++R+AIA L VLILDE T+ LD
Sbjct: 127 ALKRTGIEHLKDKP----TH------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ N++ + + +V +NL I GE V +GPSG GKSTL +++ L SG +
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTAR 302
+ + + + R VG+V Q L+ +VAEN+ + ++ +RV A
Sbjct: 62 IGEKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 119
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ P+ +LSGGQRQR+AI R L SV +LD+ S LD+
Sbjct: 120 VLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAAL 168
Query: 363 ELLVRQAVDRL 373
+ +R + RL
Sbjct: 169 RVQMRIEISRL 179
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 31/204 (15%)
Query: 185 NGDVKFC----NISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
NGD K N+SF + P VL +NL+I GE +A+ G +G GK++L L+L
Sbjct: 29 NGDRKHSSDENNVSFSHLCLVGNP-VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE 87
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVS---QDITLFSGTVAENIGYRDLMTKIDME 295
+ G I +H G VS Q + GT+ ENI + D
Sbjct: 88 LEASEGII----------------KHSGRVSFCSQFSWIMPGTIKENI----IGVSYDEY 127
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
R + + + + + NT +G G +LSGGQR R+++ARA+Y+++ + +LD
Sbjct: 128 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF 187
Query: 356 SALDSRSELLVRQA-VDRLLGHHT 378
LD +E V ++ V +L+ + T
Sbjct: 188 GYLDVFTEEQVFESCVCKLMANKT 211
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 30/204 (14%)
Query: 185 NGDVKFC----NISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
NGD K N+SF + P VL +NL+I GE +A+ G +G GK++L L+L
Sbjct: 29 NGDRKHSSDENNVSFSHLCLVGNP-VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE 87
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVS---QDITLFSGTVAENIGYRDLMTKIDME 295
+ G I +H G VS Q + GT+ ENI + D
Sbjct: 88 LEASEGII----------------KHSGRVSFCSQFSWIMPGTIKENIIFG---VSYDEY 128
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
R + + + + + NT +G G +LSGGQR R+++ARA+Y+++ + +LD
Sbjct: 129 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF 188
Query: 356 SALDSRSELLVRQA-VDRLLGHHT 378
LD +E V ++ V +L+ + T
Sbjct: 189 GYLDVFTEEQVFESCVCKLMANKT 212
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 23/179 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL +NL+I GE +A+ G +G GK++L L+L + G I +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII----------------K 96
Query: 264 HVGLVS---QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
H G VS Q + GT+ ENI + D R + + + + + NT
Sbjct: 97 HSGRVSFCSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-VDRLLGHHT 378
+G G +LSGGQR R+++ARA+Y+++ + +LD LD +E V ++ V +L+ + T
Sbjct: 154 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 30/204 (14%)
Query: 185 NGDVKFC----NISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
NGD K N+SF + P VL +NL+I GE +A+ G +G GK++L L+L
Sbjct: 29 NGDRKHSSDENNVSFSHLCLVGNP-VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE 87
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVS---QDITLFSGTVAENIGYRDLMTKIDME 295
+ G I +H G VS Q + GT+ ENI R + D
Sbjct: 88 LEASEGII----------------KHSGRVSFCSQFSWIMPGTIKENI-IRGV--SYDEY 128
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
R + + + + + NT +G G +LSGGQR R+++ARA+Y+++ + +LD
Sbjct: 129 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF 188
Query: 356 SALDSRSELLVRQA-VDRLLGHHT 378
LD +E V ++ V +L+ + T
Sbjct: 189 GYLDVFTEEQVFESCVCKLMANKT 212
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 30/175 (17%)
Query: 192 NISFKY-ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250
N+ F Y A+N + QLN + G+ +A++G +G GKSTL LLL ++ P+ G I V
Sbjct: 9 NLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-- 64
Query: 251 HDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT---ARTANAD 307
+ +G V Q FS A ++ + + M R H A+ + D
Sbjct: 65 -----------YQSIGFVPQ---FFSSPFAYSV-----LDIVLMGRSTHINTFAKPKSHD 105
Query: 308 EFVRTLPQGYN--THIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
V Y TH+ R +SLSGGQRQ + IARA+ +++LDE TSALD
Sbjct: 106 YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ + + VL +N I G+ +A+ G +G GK++L +++ +P G I
Sbjct: 11 NVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----- 65
Query: 252 DVQNIRLDSLRRHVG---LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308
+H G SQ + GT+ ENI + D R + +E
Sbjct: 66 -----------KHSGRISFCSQFSWIMPGTIKENI----IGVSYDEYRYRSVIKACQLEE 110
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL-LVR 367
+ + N +G G +LSGGQR R+++ARA+Y+++ + +LD LD +E +
Sbjct: 111 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 170
Query: 368 QAVDRLLGHHT 378
V +L+ + T
Sbjct: 171 SCVCKLMANKT 181
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 34/206 (16%)
Query: 185 NGDVKFC----NISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
NGD K N+SF + P VL +NL+I GE +A+ G +G GK++L L+L
Sbjct: 29 NGDRKHSSDENNVSFSHLCLVGNP-VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE 87
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVS---QDITLFSGTVAENI--GYRDLMTKID 293
+ G I +H G VS Q + GT+ ENI G D
Sbjct: 88 LEASEGII----------------KHSGRVSFCSQFSWIMPGTIKENIISG-----VSYD 126
Query: 294 MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
R + + + + + NT +G G +LSGGQR R+++ARA+Y+++ + +LD
Sbjct: 127 EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 186
Query: 354 ATSALDSRSELLVRQA-VDRLLGHHT 378
LD +E V ++ V +L+ + T
Sbjct: 187 PFGYLDVFTEEQVFESCVCKLMANKT 212
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 24/179 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL +N I G+ +A+ G +G GK++L +++ +P G I +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----------------K 96
Query: 264 HVG---LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
H G SQ+ + GT+ ENI + D R + +E + + N
Sbjct: 97 HSGRISFCSQNSWIMPGTIKENI----IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL-LVRQAVDRLLGHHT 378
+G G +LSGGQR R+++ARA+Y+++ + +LD LD +E + V +L+ + T
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 185 NGD--VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242
NGD + F N S P VL +N I G+ +A+ G +G GK++L +++ +P
Sbjct: 36 NGDDSLSFSNFSLL---GTP-VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 91
Query: 243 SGCILVDDHDVQNIRLDSLRRHVG---LVSQDITLFSGTVAENIGYRDLMTKIDMERVEH 299
G I +H G SQ+ + GT+ ENI + D R
Sbjct: 92 EGKI----------------KHSGRISFCSQNSWIMPGTIKENI----IGVSYDEYRYRS 131
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ +E + + N +G G +LSGGQR R+++ARA+Y+++ + +LD LD
Sbjct: 132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
Query: 360 SRSEL-LVRQAVDRLLGHHT 378
+E + V +L+ + T
Sbjct: 192 VLTEKEIFESCVCKLMANKT 211
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 23/191 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ + + VL +N I G+ +A+ G +G GK++L +++ +P G I
Sbjct: 11 NVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----- 65
Query: 252 DVQNIRLDSLRRHVG---LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308
+H G SQ + GT+ ENI + D R + +E
Sbjct: 66 -----------KHSGRISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEE 111
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL-LVR 367
+ + N +G G +LSGGQR R+++ARA+Y+++ + +LD LD +E +
Sbjct: 112 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 171
Query: 368 QAVDRLLGHHT 378
V +L+ + T
Sbjct: 172 SCVCKLMANKT 182
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 23/191 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ + + VL +N I G+ +A+ G +G GK++L +++ +P G I
Sbjct: 23 NVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----- 77
Query: 252 DVQNIRLDSLRRHVG---LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308
+H G SQ + GT+ ENI + D R + +E
Sbjct: 78 -----------KHSGRISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEE 123
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL-LVR 367
+ + N +G G +LSGGQR R+++ARA+Y+++ + +LD LD +E +
Sbjct: 124 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 183
Query: 368 QAVDRLLGHHT 378
V +L+ + T
Sbjct: 184 SCVCKLMANKT 194
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ ++SF+Y N VL +N G+ ++G +G GK+TL K+L L +G I
Sbjct: 12 IELNSVSFRY--NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIF 68
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDIT--LFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
+D L R++VG V Q+ + + TV E++ + + + ++ E R
Sbjct: 69 LDGSPADPFLL---RKNVGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKRIKK 123
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
E V G + +LSGGQ+QRLAIA L +++ L LDE S LD S+
Sbjct: 124 VLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQRE 178
Query: 366 VRQAVDRL 373
+ Q ++ L
Sbjct: 179 IFQVLESL 186
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 29/200 (14%)
Query: 185 NGD--VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242
NGD + F N S P VL +N I G+ +A+ G +G GK++L +++ +P
Sbjct: 36 NGDDSLSFSNFSLL---GTP-VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 91
Query: 243 SGCILVDDHDVQNIRLDSLRRHVG---LVSQDITLFSGTVAENIGYRDLMTKIDMERVEH 299
G I +H G SQ + GT+ ENI D R
Sbjct: 92 EGKI----------------KHSGRISFCSQFSWIMPGTIKENI---IAGVSYDEYRYRS 132
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ +E + + N +G G +LSGGQR R+++ARA+Y+++ + +LD LD
Sbjct: 133 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
Query: 360 SRSEL-LVRQAVDRLLGHHT 378
+E + V +L+ + T
Sbjct: 193 VLTEKEIFESCVCKLMANKT 212
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 17/161 (10%)
Query: 207 QLNLHIRAG-ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265
+LN+ G + L+GP+G GKS +L+ + P G + ++ D+ L RR +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGI 72
Query: 266 GLVSQDITLFSG-TVAENIGY--RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
G V QD LF +V NI Y R++ RV A + P
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-------- 124
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+ LSGG+RQR+A+ARAL +L+LDE SA+D +++
Sbjct: 125 ---ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 12/162 (7%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QNIRLDS 260
+L ++L ++ GE V++IG SG GKSTL +L L P G + ++ +V L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 261 LR-RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
LR R +G V Q L T EN+ ++ + M + + A+ E++ + G
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENV----IVPMLKMGKPKKEAKERG--EYLLS-ELGLG 131
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
+ + LSGG++QR+AIARAL +L DE T LDS
Sbjct: 132 DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 41/173 (23%)
Query: 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD---DHDVQNIRLDSLRRHVGL 267
IR GE + ++GP+G GK+T K+L + +P G + D + Q I+ +
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE-------- 415
Query: 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL--PQG----YNTHI 321
+ GTV E L++KID ++ N++ + L P G Y+ ++
Sbjct: 416 -------YEGTVYE------LLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV 455
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374
LSGG+ QR+AIA L +++ + +LDE ++ LD L V +A+ L+
Sbjct: 456 ----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 504
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 200 NMPLVLDQLNLH--------------IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
N+P LD+ +H ++ G V ++GP+G GK+T K+L P
Sbjct: 74 NLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP---- 129
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG--YRDLMTKIDMERV-EHTAR 302
L +D+D + + + R + L + L +G + + Y DL+ K +V E +
Sbjct: 130 NLCEDNDSWDNVIRAFRGN-ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK 188
Query: 303 TANADEFVRTLPQGYNTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+F + + ++ R LSGG+ QR+AIA AL + + DE +S LD R
Sbjct: 189 VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 248
Query: 362 SELLVRQAVDRL 373
L V + + RL
Sbjct: 249 QRLKVARVIRRL 260
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 41/173 (23%)
Query: 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD---DHDVQNIRLDSLRRHVGL 267
IR GE + ++GP+G GK+T K+L + +P G + D + Q I+ +
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE-------- 429
Query: 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL--PQG----YNTHI 321
+ GTV E L++KID ++ N++ + L P G Y+ ++
Sbjct: 430 -------YEGTVYE------LLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV 469
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374
LSGG+ QR+AIA L +++ + +LDE ++ LD L V +A+ L+
Sbjct: 470 ----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 200 NMPLVLDQLNLH--------------IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
N+P LD+ +H ++ G V ++GP+G GK+T K+L P
Sbjct: 88 NLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP---- 143
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG--YRDLMTKIDMERV-EHTAR 302
L +D+D + + + R + L + L +G + + Y DL+ K +V E +
Sbjct: 144 NLCEDNDSWDNVIRAFRGN-ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK 202
Query: 303 TANADEFVRTLPQGYNTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+F + + ++ R LSGG+ QR+AIA AL + + DE +S LD R
Sbjct: 203 VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262
Query: 362 SELLVRQAVDRL 373
L V + + RL
Sbjct: 263 QRLKVARVIRRL 274
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 24/179 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL +N I G+ +A+ G +G GK++L +++ +P G I +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----------------K 96
Query: 264 HVG---LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
H G SQ + GT+ ENI + D R + +E + + N
Sbjct: 97 HSGRISFCSQFSWIMPGTIKENI----IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL-LVRQAVDRLLGHHT 378
+G G +LS GQ+ ++++ARA+Y+++ + +LD LD +E + V +L+ + T
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 23/179 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL +N I G+ +A+ G +G GK++L +++ +P G I +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----------------K 96
Query: 264 HVG---LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
H G SQ + GT+ ENI + D R + +E + + N
Sbjct: 97 HSGRISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIV 153
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL-LVRQAVDRLLGHHT 378
+G G +LS GQ+ ++++ARA+Y+++ + +LD LD +E + V +L+ + T
Sbjct: 154 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 212
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 41/172 (23%)
Query: 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD---DHDVQNIRLDSLRRHVGL 267
I+ GE + ++GP+G GK+T K L + +P G I D + Q I+ D
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKAD-------- 359
Query: 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL--PQG----YNTHI 321
+ GTV E L++KID ++ N++ + L P G Y+ +
Sbjct: 360 -------YEGTVYE------LLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREV 399
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
+ LSGG+ QR+AIA L +++ + +LDE ++ LD L V +A+ L
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 15/169 (8%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLL-RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270
++ G V ++GP+G GKST K+L +L L G D ++ R + L+ +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE---- 99
Query: 271 DITLFSGTVAENIG--YRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPR 324
L +G + + Y DL+ K +E ++ T +E V+ L +
Sbjct: 100 --KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALE--LENVLERE 155
Query: 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
LSGG+ QR+AIA AL +N++ DE +S LD R L +A+ RL
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL 204
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 186 GDVKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242
G ++ N+S + PL L+ ++L I GE + + G +G GKSTL +++ L +P
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHT 300
SG +L +D + + +RR++G+ Q + F+ V + + + D + V
Sbjct: 63 SGDVL---YDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 119
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
+ A EFV + + LSGG+++R+AIA + +LILDE LD
Sbjct: 120 KK---AMEFVGLDFDSFKDRV---PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 173
Query: 360 -SRSELL 365
+++LL
Sbjct: 174 EGKTDLL 180
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSL 261
D ++L I A++G S GKST+ + + + P LSG +L D+ +R + L
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 262 RR----HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
R+ + LV Q + I + + R H+ A E +R +
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNP 144
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ LSGG +QR+ IA AL + VLILDE TSALD
Sbjct: 145 EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 16/185 (8%)
Query: 188 VKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
++ N+S + PL L+ ++L I GE + + G +G GKSTL +++ L +P SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 245 CILVDDHDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHTAR 302
+L +D + + +RR++G+ Q + F+ V + + + D + V +
Sbjct: 63 DVL---YDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--S 360
A EFV + + LSGG+++R+AIA + +LILDE LD
Sbjct: 120 ---AMEFVGLDFDSFKDRV---PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 361 RSELL 365
+++LL
Sbjct: 174 KTDLL 178
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 18/164 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+++ ++LHI +GE VA+IGP+G GKSTL +LL P G + ++ + + +L R
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 264 HVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
++ Q L F +V+E I M R + + + + + Q +
Sbjct: 86 TRAVMRQYSELAFPFSVSE---------VIQMGRAPYGG-SQDRQALQQVMAQTDCLALA 135
Query: 323 PRGSS-LSGGQRQRLAIARALYQ------NSSVLILDEATSALD 359
R LSGG++QR+ +AR L Q L LDE TSALD
Sbjct: 136 QRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 11/158 (6%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+L ++ I GE LIGP+G GK+T +++ L P SG + V +V +R+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ--GYNTHI 321
+ + ++ + + I Y + + + ++ +E V + G I
Sbjct: 89 LISYLPEEAGAYRNM--QGIEYLRFVAGF------YASSSSEIEEMVERATEIAGLGEKI 140
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
R S+ S G ++L IARAL N + ILDE TS LD
Sbjct: 141 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 178
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 81/175 (46%), Gaps = 29/175 (16%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR------ 257
VL ++L RAG+ +++IG SG GKST + + L P G I+V+ ++ +R
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 258 -------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEF 309
L LR + +V Q L+S TV EN+ ME + D
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV----------MEAPIQVLGLSKHDAR 130
Query: 310 VRTLPQGYNTHIGPRGSS-----LSGGQRQRLAIARALYQNSSVLILDEATSALD 359
R L I R LSGGQ+QR++IARAL VL+ DE TSALD
Sbjct: 131 ERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 36/175 (20%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNI--RLDS 260
+L +++ I G+ L G +G GK+TL +L Y+P SG + + + ++
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-NAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 261 LRRHVGLVSQDI------------TLFSGTVAENIG-YRDLMTKIDMER---VEHTARTA 304
+R+H+G VS + + SG ++IG Y+D+ +I E ++ +A
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAF-KSIGVYQDIDDEIRNEAHQLLKLVGXSA 153
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A +++ GY LS G++QR+ IARAL VLILDE + LD
Sbjct: 154 KAQQYI-----GY----------LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
LD +++ + G+ +IGP+G GKSTL ++ G + ++ D+ N L H
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YH 81
Query: 265 VGLVSQDIT---LFSGTVAEN--IG-------------YRDLMTKIDMERVEHTARTANA 306
G+V T L TV EN IG Y+ + K + E VE +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPK-EEEMVEKAFKIL-- 138
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
EF++ L Y+ G LSGGQ + + I RAL N ++++DE + +
Sbjct: 139 -EFLK-LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
CN F A ++L++ L ++ + GP+G GKSTL + + VD
Sbjct: 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ--------VD 487
Query: 250 DHDVQN-IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308
Q R + + D ++ +G ++ + +E DE
Sbjct: 488 GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE-------FGFTDE 540
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
+ +P S+LSGG + +LA+ARA+ +N+ +L+LDE T+ LD+
Sbjct: 541 MI-AMPI----------SALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
VK N+ F+Y + +N +A+IGP+G GKSTL +L P SG +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+N R+ +++H + + T +E I +R T D E ++ R N +
Sbjct: 732 TH----ENCRIAYIKQHA--FAHIESHLDKTPSEYIQWR-FQTGEDRETMDRANRQINEN 784
Query: 308 E 308
+
Sbjct: 785 D 785
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
R LSGGQ+ +L +A +Q +++LDE T+ LD S + +A+ G
Sbjct: 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEG 949
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 29/173 (16%)
Query: 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
CN F A ++L++ L ++ + GP+G GKSTL + + VD
Sbjct: 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQ--------VD 487
Query: 250 DHDVQN-IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308
Q R + + D ++ +G ++ + D+
Sbjct: 488 GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAI----------------KDK 531
Query: 309 FVRTLPQGY-NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
+ G+ + I S+LSGG + +LA+ARA+ +N+ +L+LDE T+ LD+
Sbjct: 532 LIEF---GFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
VK N F+Y + +N +A+IGP+G GKSTL +L P SG +
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+N R+ +++H + + T +E I +R T D E + R N +
Sbjct: 732 TH----ENCRIAYIKQHA--FAHIESHLDKTPSEYIQWR-FQTGEDRETXDRANRQINEN 784
Query: 308 E 308
+
Sbjct: 785 D 785
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
R LSGGQ+ +L +A +Q +++LDE T+ LD S + +A+ G
Sbjct: 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEG 949
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 196 KYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV-- 253
K N P VL+ ++L + GE + +IG SG GK+TL + L P SG I + +
Sbjct: 12 KSFQNTP-VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS 70
Query: 254 QNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYR----DLMTKIDMERVEHTARTANADE 308
+N L R +G + Q+ LF TV NI Y T + +R+E E
Sbjct: 71 KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE 130
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368
P LSGGQ+QR A+ARAL + +++LDE SALD + +R+
Sbjct: 131 LAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRE 179
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 29/173 (16%)
Query: 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
CN F A ++L++ L ++ + GP+G GKSTL + + VD
Sbjct: 430 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQ--------VD 481
Query: 250 DHDVQN-IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308
Q R + + D ++ +G ++ + D+
Sbjct: 482 GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAI----------------KDK 525
Query: 309 FVRTLPQGY-NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
+ G+ + I S+LSGG + +LA+ARA+ +N+ +L+LDE T+ LD+
Sbjct: 526 LIEF---GFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
VK N F+Y + +N +A+IGP+G GKSTL +L P SG +
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 725
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+N R+ +++H + + T +E I +R T D E + R N +
Sbjct: 726 TH----ENCRIAYIKQHA--FAHIESHLDKTPSEYIQWR-FQTGEDRETXDRANRQINEN 778
Query: 308 E 308
+
Sbjct: 779 D 779
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
R LSGGQ+ +L +A +Q +++LDE T+ LD S + +A+ G
Sbjct: 892 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEG 943
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDS- 260
+L +NL + GE AL+GP+G GKSTL K+L Y G IL+D ++ + D
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME--------RVEHTARTANADE--FV 310
R+ + L Q G N L K+ E +V+ + DE
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
R L +G+ SGG+++R I + L + +LDE S LD + +V + V
Sbjct: 138 RYLNEGF-----------SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
Query: 371 DRLLG 375
+ + G
Sbjct: 187 NAMRG 191
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
LD +++ + G+ +IGP+G GKSTL ++ G + ++ D+ N L H
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YH 81
Query: 265 VGLVSQDIT---LFSGTVAEN--IG-------------YRDLMTKIDMERVEHTARTANA 306
G+V T L TV EN IG Y+ + K + E VE +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPK-EEEMVEKAFKIL-- 138
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
EF++ L Y+ G LSGGQ + + I RAL N ++++DE + +
Sbjct: 139 -EFLK-LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
LD +++ + G+ +IGP+G GKSTL ++ G + ++ D+ N L H
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YH 81
Query: 265 VGLVSQDIT---LFSGTVAEN--IG-------------YRDLMTKIDMERVEHTARTANA 306
G+V T L TV EN IG Y+ + K + E VE +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPK-EEEMVEKAFKIL-- 138
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
EF++ L Y+ G LSGGQ + + I RAL N ++++D+ + +
Sbjct: 139 -EFLK-LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH-VG 266
++L + G+ V LIG +G GK+T + L G I+ + D+ N + R +
Sbjct: 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIA 84
Query: 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG 325
LV + +F TV EN+ + D E ++ E++ +L + G
Sbjct: 85 LVPEGRRIFPELTVYENL-XXGAYNRKDKEGIKRDL------EWIFSLFPRLKERLKQLG 137
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
+LSGG++Q LAI RAL +L DE + L
Sbjct: 138 GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 34/191 (17%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K+ I K D LV+D N + GE + ++GP+G GK+T A++L+ G I
Sbjct: 270 MKWTKIIKKLGD-FQLVVD--NGEAKEGEIIGILGPNGIGKTTFARILV-------GEIT 319
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDI-TLFSGTVAENIGYRDLMTKIDMERVEHTARTA-- 304
D+ V ++ + Q I + GTV + +E+ ++ A
Sbjct: 320 ADEGSVT-----PEKQILSYKPQRIFPNYDGTV--------------QQYLENASKDALS 360
Query: 305 NADEFVRTLPQGYNTH--IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ F + + N H + + LSGG+ Q+L IA L + + + +LD+ +S LD
Sbjct: 361 TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420
Query: 363 ELLVRQAVDRL 373
+V +A+ R+
Sbjct: 421 RYIVAKAIKRV 431
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
LSGG QRL +A +L + + V I D+ +S LD R + + +A+ LL + V
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYV 190
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL+++ + I G V GP+G GK+TL K + PL G I+ + + + ++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN-----GVPITKVKG 78
Query: 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+ + ++I V I D + + N +E + L +
Sbjct: 79 KIFFLPEEI-----IVPRKISVEDYLKAV----ASLYGVKVNKNEIMDALESVEVLDLKK 129
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374
+ LS G +R+ +A L N+ + +LD+ A+D S+ V +++ +L
Sbjct: 130 KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL- 274
E + ++G +G GK+TL KLL P G D+ + +V + Q I
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEG------QDIPKL-------NVSMKPQKIAPK 425
Query: 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334
F GTV + KI + + +T + V+ P + I LSGG+ Q
Sbjct: 426 FPGTVRQL-----FFKKIRGQFLNPQFQT----DVVK--PLRIDDIIDQEVQHLSGGELQ 474
Query: 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
R+AI AL + + ++DE ++ LDS ++ + + R + H+
Sbjct: 475 RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN 517
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 12/172 (6%)
Query: 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRRH-VGL 267
R G+ + L+G +G GKST K+L P G D + Q I R L+ + +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG-RFDDPPEWQEIIKYFRGSELQNYFTKM 159
Query: 268 VSQDI-TLFSGTVAENI--GYRDLMTKI-DMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+ DI + +NI + + K+ ++ ++ + +++ L Q N +
Sbjct: 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL-QLENV-LKR 217
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
LSGG+ QR AI + Q + V + DE +S LD + L Q + LL
Sbjct: 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA 269
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257
L+ +NL + GE V ++GP+G GK+TL + + L P SG I ++ +V+ IR
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR 71
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277
V L+G G GKST+A+ L ++ + L + +V + D L+ V LV TL
Sbjct: 27 VILVGSPGSGKSTIAEELXQIINEKYHTFLSEHPNVIEVN-DRLKPMVNLVDSLKTLQPN 85
Query: 278 TVAENIG----YRDLMTKIDMERVEHTARTANADEFVRTLPQG 316
VAE I ++D + ++ + V+++A T+N +E + +G
Sbjct: 86 KVAEMIENQGLFKDHVEDVNFQPVKYSALTSNNEEXTAVVARG 128
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDVQNIRLDSLR 262
L L+ +RAGE + L+GP+G GKSTL L R SG I ++ L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTL---LARXAGXTSGKGSIQFAGQPLEAWSATKLA 72
Query: 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
H +SQ T A + + + + D R E A A + +G
Sbjct: 73 LHRAYLSQQQT---PPFATPVWHYLTLHQHDKTRTELLNDVAGALAL--------DDKLG 121
Query: 323 PRGSSLSGGQRQRLAIARALYQ-------NSSVLILDEATSALDSRSELLVRQAVDRLL 374
+ LSGG+ QR+ +A + Q +L+LDE ++LD + + A+D++L
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD----VAQQSALDKIL 176
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 35/183 (19%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDVQNIRLDSLR 262
L L+ +RAGE + L+GP+G GKSTL L R SG I ++ L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTL---LARXAGXTSGKGSIQFAGQPLEAWSATKLA 72
Query: 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA----DEFVRTLPQGYN 318
H +SQ T A + + + + D R E A A D+ R+ Q
Sbjct: 73 LHRAYLSQQQT---PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ--- 126
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQ-------NSSVLILDEATSALDSRSELLVRQAVD 371
LSGG+ QR+ +A + Q +L+LDE ++LD + + A+D
Sbjct: 127 ---------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD----VAQQSALD 173
Query: 372 RLL 374
++L
Sbjct: 174 KIL 176
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS--GCILVDDHDVQNIRLDSLR 262
L L+ +RAGE + L+GP+G GKST LL R+ S G I ++ L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGKGSIQFAGQPLEAWSATKLA 72
Query: 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
H +SQ T A + + + + D R E A A + +G
Sbjct: 73 LHRAYLSQQQT---PPFATPVWHYLTLHQHDKTRTELLNDVAGALAL--------DDKLG 121
Query: 323 PRGSSLSGGQRQRLAIARALYQ-------NSSVLILDEATSALDSRSELLVRQAVDRLL 374
+ LSGG+ QR+ +A + Q +L+LD+ ++LD + A+D++L
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQ----SALDKIL 176
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS--GCILVDDHDVQNIRLDSLR 262
L L+ +RAGE + L+GP+G GKST LL R+ S G I ++ L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGKGSIQFAGQPLEAWSATKLA 72
Query: 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
H +SQ T A + + + + D R E A A + +G
Sbjct: 73 LHRAYLSQQQT---PPFATPVWHYLTLHQHDKTRTELLNDVAGALAL--------DDKLG 121
Query: 323 PRGSSLSGGQRQRLAIARALYQ-------NSSVLILDEATSALDSRSELLVRQAVDRLL 374
+ LSGG+ QR+ +A + Q +L+LD+ +LD + A+D++L
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQ----SALDKIL 176
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235
+L L+L + GE A++GP+G GKSTL+ L
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 47
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235
+L L+L + GE A++GP+G GKSTL+ L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 66
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 200 NMPLVLDQLNLHI----RAGETVALIGPSGGGKSTLAK-LLLRLYDPLSGCILVDDHDVQ 254
+ P VL +L+ R G TV G SG GKSTLA+ L RL + C+ + D D+
Sbjct: 350 SFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409
Query: 255 NIRLDSLR-----------RHVGLVSQDITLFSG 277
L S R +G V+ +IT G
Sbjct: 410 RRHLSSELGFSKAHRDVNVRRIGFVASEITKNRG 443
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 304 ANADEFVRTLPQ---GYNTHIGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSA 357
A ++RTL GY +G +LSGG+ QR+ +A L + S +V ILDE T+
Sbjct: 838 AGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTG 896
Query: 358 L 358
L
Sbjct: 897 L 897
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 195 FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKL 234
FK PL L+ +N+ + AG+ V L+ P+GGGKS +L
Sbjct: 40 FKLEKFRPLQLETINVTM-AGKEVFLVMPTGGGKSLCYQL 78
>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
pdb|2PZI|B Chain B, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
Length = 681
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 21 PSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
P +V+ Y+G + K SK L +A AYL E+LPA+ ++ +
Sbjct: 157 PVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHS 200
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSAL 358
+G ++LSGG+ QR+ +A L++ S ++ ILDE T+ L
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 879
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSAL 358
GY +G ++LSGG+ QR+ +A L++ S ++ ILDE T+ L
Sbjct: 835 GY-XKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 879
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSAL 358
+G ++LSGG+ QR+ +A L++ S ++ ILDE T+ L
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 577
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH--DVQNIRLDSLRRHVGL 267
L+I G V ++GPSGGGK+T ++ L + + I + H D + I D L + L
Sbjct: 903 LNINHG--VMMVGPSGGGKTTSWEVYLEAIEQVDN-IKSEAHVMDPKAITKDQLFGSLDL 959
Query: 268 VSQDIT--LFSGTVAENI-GYRDLMTK---------IDMERVEHTARTANADEFVRTLPQ 315
+++ T LF+ T+ I R TK +D E VE+ + ++ + TLP
Sbjct: 960 TTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLL-TLPN 1018
Query: 316 G 316
G
Sbjct: 1019 G 1019
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH--DVQNIRLDSLRRHVGL 267
L+I G V ++GPSGGGK+T ++ L + + I + H D + I D L + L
Sbjct: 903 LNINHG--VMMVGPSGGGKTTSWEVYLEAIEQVDN-IKSEAHVMDPKAITKDQLFGSLDL 959
Query: 268 VSQDIT--LFSGTVAENI-GYRDLMTK---------IDMERVEHTARTANADEFVRTLPQ 315
+++ T LF+ T+ I R TK +D E VE+ + ++ + TLP
Sbjct: 960 TTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLL-TLPN 1018
Query: 316 G 316
G
Sbjct: 1019 G 1019
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277
V LIG G GKSTLA + ++D + D D + + D+ R + + + T+
Sbjct: 40 VVLIGEQGVGKSTLANIFAGVHDSM-------DSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 278 TVAENIGYRDLM 289
+ EN G + +
Sbjct: 93 DMWENKGENEWL 104
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277
V LIG G GKSTLA + ++D + D D + + D+ R + + + T+
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSM-------DSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 278 TVAENIGYRDLM 289
+ EN G + +
Sbjct: 62 DMWENKGENEWL 73
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 217 TVALIGPSGGGKSTLAKLLLRLYD 240
+ LIGP+G GK+ LA+ L RL D
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLD 76
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 217 TVALIGPSGGGKSTLAKLLLRLYD 240
+ LIGP+G GK+ LA+ L RL D
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLD 76
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 321 IGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRS-ELLVRQAVDRLLGH 376
+G + LSGG+ QR+ +A L ++ +V +LDE T+ L E L RQ V +
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 377 HTV 379
+TV
Sbjct: 784 NTV 786
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277
V LIG G GKSTLA + ++D + D D + + D+ R + + + T+
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSM-------DSDXEVLGEDTYERTLMVDGESATIILL 61
Query: 278 TVAENIGYRDLM 289
+ EN G + +
Sbjct: 62 DMWENKGENEWL 73
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277
V LIG G GKSTLA + ++D + D D + + D+ R + + + T+
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSM-------DSDXEVLGEDTYERTLMVDGESATIILL 61
Query: 278 TVAENIGYRDLM 289
+ EN G + +
Sbjct: 62 DMWENKGENEWL 73
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257
V L GPSG GKSTL K L + + + G + H +N R
Sbjct: 7 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSV--SHTTRNPR 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,658,514
Number of Sequences: 62578
Number of extensions: 362233
Number of successful extensions: 1353
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1126
Number of HSP's gapped (non-prelim): 157
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)