Query 016798
Match_columns 382
No_of_seqs 241 out of 2453
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 3.3E-87 7.1E-92 676.3 41.1 377 2-381 280-658 (716)
2 COG2274 SunT ABC-type bacterio 100.0 7.6E-82 1.6E-86 657.7 46.3 377 3-381 286-663 (709)
3 TIGR02868 CydC thiol reductant 100.0 1.6E-77 3.5E-82 618.0 47.2 375 3-381 146-524 (529)
4 KOG0055 Multidrug/pheromone ex 100.0 1E-77 2.2E-82 637.2 43.9 375 4-380 802-1179(1228)
5 PRK11174 cysteine/glutathione 100.0 3E-75 6.5E-80 608.2 47.3 373 3-381 156-539 (588)
6 TIGR03375 type_I_sec_LssB type 100.0 3.7E-75 8.1E-80 617.9 48.9 377 3-381 278-655 (694)
7 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.1E-75 1.3E-79 615.5 49.1 372 3-381 268-640 (686)
8 COG1132 MdlB ABC-type multidru 100.0 1.9E-74 4.1E-79 599.6 46.9 374 3-381 145-519 (567)
9 TIGR01193 bacteriocin_ABC ABC- 100.0 1.8E-74 3.8E-79 614.0 47.2 376 3-381 288-664 (708)
10 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.2E-74 4.8E-79 613.6 47.4 375 3-381 286-667 (710)
11 PRK11176 lipid transporter ATP 100.0 7.8E-74 1.7E-78 597.0 48.0 376 3-381 158-534 (582)
12 TIGR00958 3a01208 Conjugate Tr 100.0 2.8E-73 6.1E-78 603.9 47.4 374 3-381 294-669 (711)
13 TIGR02857 CydD thiol reductant 100.0 4E-73 8.6E-78 585.3 47.1 375 3-381 137-512 (529)
14 COG4988 CydD ABC-type transpor 100.0 3.7E-73 7.9E-78 564.4 44.9 375 3-381 133-510 (559)
15 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-72 2.4E-77 587.0 48.0 376 3-381 147-523 (571)
16 TIGR01846 type_I_sec_HlyB type 100.0 3E-72 6.4E-77 595.6 48.5 376 3-381 271-647 (694)
17 PRK11160 cysteine/glutathione 100.0 4.2E-72 9.1E-77 582.2 47.3 374 3-381 153-529 (574)
18 KOG0055 Multidrug/pheromone ex 100.0 1.9E-73 4.2E-78 604.7 34.7 376 4-381 165-543 (1228)
19 PRK13657 cyclic beta-1,2-gluca 100.0 1.8E-71 3.8E-76 579.7 49.0 376 3-381 149-525 (588)
20 PTZ00265 multidrug resistance 100.0 8.9E-72 1.9E-76 624.7 47.1 374 3-381 961-1414(1466)
21 PRK10790 putative multidrug tr 100.0 3.1E-71 6.7E-76 578.4 48.0 371 3-381 158-530 (592)
22 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-70 2.6E-75 568.4 48.1 374 3-381 134-509 (544)
23 PRK10789 putative multidrug tr 100.0 2.7E-70 5.8E-75 568.4 48.8 372 6-381 133-505 (569)
24 TIGR02204 MsbA_rel ABC transpo 100.0 3.7E-70 8.1E-75 568.6 47.9 377 3-381 151-530 (576)
25 KOG0056 Heavy metal exporter H 100.0 1.5E-72 3.3E-77 543.2 25.9 375 4-381 353-728 (790)
26 TIGR01192 chvA glucan exporter 100.0 1.2E-69 2.6E-74 564.8 48.7 376 3-381 149-525 (585)
27 KOG0057 Mitochondrial Fe/S clu 100.0 2.3E-70 5E-75 537.2 38.4 366 10-381 175-541 (591)
28 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-67 2.4E-72 596.6 48.4 373 4-381 1099-1475(1522)
29 COG4987 CydC ABC-type transpor 100.0 3.5E-68 7.5E-73 521.5 38.1 374 4-381 152-528 (573)
30 COG4618 ArpD ABC-type protease 100.0 3.7E-67 8E-72 510.1 38.2 373 3-380 152-526 (580)
31 COG5265 ATM1 ABC-type transpor 100.0 4.1E-68 9E-73 506.6 28.6 374 4-380 77-452 (497)
32 PTZ00243 ABC transporter; Prov 100.0 6.5E-66 1.4E-70 581.4 48.1 375 4-381 1092-1500(1560)
33 PTZ00265 multidrug resistance 100.0 1.1E-65 2.4E-70 575.7 47.0 378 3-381 190-635 (1466)
34 PLN03130 ABC transporter C fam 100.0 1.5E-65 3.2E-70 579.4 48.0 347 28-381 1071-1428(1622)
35 PLN03232 ABC transporter C fam 100.0 2.7E-65 5.8E-70 576.5 46.9 345 32-381 1072-1425(1495)
36 TIGR01271 CFTR_protein cystic 100.0 3E-63 6.5E-68 559.1 48.0 369 4-381 1019-1407(1490)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.1E-63 4.6E-68 515.2 43.0 366 3-381 145-526 (555)
38 KOG0054 Multidrug resistance-a 100.0 3.3E-62 7.1E-67 529.6 40.3 372 4-380 952-1328(1381)
39 PLN03232 ABC transporter C fam 100.0 3.2E-61 6.9E-66 543.4 44.1 338 26-381 456-795 (1495)
40 PLN03130 ABC transporter C fam 100.0 1.7E-60 3.7E-65 538.3 45.6 341 22-381 452-795 (1622)
41 PRK10522 multidrug transporter 100.0 1E-58 2.2E-63 479.7 43.4 360 3-381 140-505 (547)
42 TIGR00954 3a01203 Peroxysomal 100.0 1.1E-56 2.5E-61 472.1 42.9 361 5-381 233-634 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 1.5E-55 3.2E-60 498.1 45.6 351 14-381 461-817 (1522)
44 KOG0054 Multidrug resistance-a 100.0 4.3E-55 9.4E-60 474.3 42.9 350 14-380 345-697 (1381)
45 TIGR01271 CFTR_protein cystic 100.0 4.7E-53 1E-57 476.6 45.2 353 6-381 217-603 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 5.9E-51 1.3E-55 460.1 42.4 358 7-381 383-837 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.5E-48 7.5E-53 366.9 22.7 192 186-381 1-192 (275)
48 COG1117 PstB ABC-type phosphat 100.0 4.9E-48 1.1E-52 340.3 17.3 187 186-381 6-203 (253)
49 COG1126 GlnQ ABC-type polar am 100.0 8.1E-48 1.7E-52 340.2 17.4 181 187-380 2-190 (240)
50 cd03244 ABCC_MRP_domain2 Domai 100.0 8E-46 1.7E-50 340.6 23.0 193 186-381 1-193 (221)
51 cd03252 ABCC_Hemolysin The ABC 100.0 1.5E-45 3.3E-50 342.3 22.0 192 188-381 1-192 (237)
52 PRK14257 phosphate ABC transpo 100.0 1.7E-45 3.7E-50 357.0 21.1 191 184-381 77-279 (329)
53 cd03245 ABCC_bacteriocin_expor 100.0 5.7E-45 1.2E-49 334.7 22.9 194 186-381 1-194 (220)
54 COG1135 AbcC ABC-type metal io 100.0 1.1E-45 2.3E-50 342.3 17.8 182 188-380 2-196 (339)
55 cd03254 ABCC_Glucan_exporter_l 100.0 5.5E-45 1.2E-49 336.8 22.0 193 186-381 1-193 (229)
56 COG2884 FtsE Predicted ATPase 100.0 1.4E-45 2.9E-50 319.4 16.2 182 188-381 2-192 (223)
57 COG1136 SalX ABC-type antimicr 100.0 4.8E-45 1E-49 330.6 20.0 183 188-381 2-198 (226)
58 cd03251 ABCC_MsbA MsbA is an e 100.0 1.2E-44 2.5E-49 335.7 22.6 192 188-381 1-192 (234)
59 COG1125 OpuBA ABC-type proline 100.0 1.7E-45 3.7E-50 331.9 15.6 181 188-381 2-191 (309)
60 cd03288 ABCC_SUR2 The SUR doma 100.0 2E-44 4.4E-49 338.9 23.2 195 184-381 16-210 (257)
61 COG1116 TauB ABC-type nitrate/ 100.0 4.9E-45 1.1E-49 331.1 17.6 177 187-381 3-186 (248)
62 cd03253 ABCC_ATM1_transporter 100.0 2.5E-44 5.5E-49 333.8 22.2 191 188-381 1-191 (236)
63 COG1120 FepC ABC-type cobalami 100.0 6E-45 1.3E-49 336.1 17.4 182 187-381 2-194 (258)
64 cd03248 ABCC_TAP TAP, the Tran 100.0 3.9E-44 8.5E-49 330.5 22.5 196 184-381 8-204 (226)
65 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.8E-44 3.9E-49 331.4 19.1 179 187-381 4-194 (254)
66 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 5.7E-44 1.2E-48 332.0 21.7 192 188-381 1-193 (238)
67 TIGR00960 3a0501s02 Type II (G 100.0 3.3E-44 7.2E-49 328.8 18.3 183 188-381 2-193 (216)
68 COG3839 MalK ABC-type sugar tr 100.0 5.8E-44 1.3E-48 341.4 19.2 179 187-380 3-188 (338)
69 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.4E-43 3.1E-48 324.9 18.6 183 188-381 1-196 (218)
70 COG3638 ABC-type phosphate/pho 100.0 1.3E-43 2.7E-48 317.3 17.6 183 187-381 3-203 (258)
71 cd03250 ABCC_MRP_domain1 Domai 100.0 4.1E-43 9E-48 318.8 21.0 178 188-381 1-183 (204)
72 COG1122 CbiO ABC-type cobalt t 100.0 1.3E-43 2.9E-48 326.3 17.7 183 187-381 3-194 (235)
73 TIGR02314 ABC_MetN D-methionin 100.0 2.5E-43 5.3E-48 342.9 19.5 183 188-381 2-196 (343)
74 cd03226 ABC_cobalt_CbiO_domain 100.0 2.4E-43 5.1E-48 320.7 18.1 177 190-381 2-181 (205)
75 cd03260 ABC_PstB_phosphate_tra 100.0 3.9E-43 8.6E-48 324.1 18.8 183 188-381 1-195 (227)
76 cd03225 ABC_cobalt_CbiO_domain 100.0 4.7E-43 1E-47 319.9 18.8 182 189-381 1-189 (211)
77 cd03290 ABCC_SUR1_N The SUR do 100.0 1.6E-42 3.4E-47 318.2 21.6 189 189-381 2-197 (218)
78 COG4178 ABC-type uncharacteriz 100.0 1.8E-40 4E-45 335.6 38.5 356 8-380 204-568 (604)
79 COG3842 PotA ABC-type spermidi 100.0 3.1E-43 6.6E-48 338.2 17.2 180 186-380 4-191 (352)
80 cd03261 ABC_Org_Solvent_Resist 100.0 4.5E-43 9.7E-48 325.4 17.7 181 188-381 1-192 (235)
81 TIGR02673 FtsE cell division A 100.0 1.2E-42 2.7E-47 317.8 19.4 182 188-381 2-192 (214)
82 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.7E-42 5.8E-47 314.2 21.4 175 186-381 5-179 (207)
83 PRK13631 cbiO cobalt transport 100.0 2.7E-42 5.8E-47 333.7 22.5 188 187-381 21-231 (320)
84 PRK13650 cbiO cobalt transport 100.0 1.9E-42 4.1E-47 329.3 21.0 184 187-381 4-196 (279)
85 PRK11629 lolD lipoprotein tran 100.0 1.3E-42 2.8E-47 322.0 19.3 184 187-381 5-201 (233)
86 cd03259 ABC_Carb_Solutes_like 100.0 9.6E-43 2.1E-47 318.5 18.2 179 188-381 1-186 (213)
87 cd03263 ABC_subfamily_A The AB 100.0 1.1E-42 2.5E-47 319.4 18.8 182 188-381 1-187 (220)
88 cd03292 ABC_FtsE_transporter F 100.0 1.7E-42 3.7E-47 316.8 19.6 182 188-381 1-191 (214)
89 TIGR02211 LolD_lipo_ex lipopro 100.0 1.9E-42 4.2E-47 318.1 19.5 183 188-381 2-197 (221)
90 cd03266 ABC_NatA_sodium_export 100.0 1.8E-42 3.9E-47 317.6 19.1 182 188-381 2-191 (218)
91 cd03268 ABC_BcrA_bacitracin_re 100.0 1.2E-42 2.6E-47 316.7 17.7 179 188-381 1-181 (208)
92 PRK14250 phosphate ABC transpo 100.0 3.3E-42 7.1E-47 320.9 20.2 182 187-381 3-187 (241)
93 PRK13647 cbiO cobalt transport 100.0 3.6E-42 7.7E-47 326.5 20.6 183 187-381 4-193 (274)
94 cd03264 ABC_drug_resistance_li 100.0 1.8E-42 3.9E-47 316.2 17.5 179 188-381 1-184 (211)
95 PRK11650 ugpC glycerol-3-phosp 100.0 3.8E-42 8.3E-47 336.8 21.0 181 187-381 3-190 (356)
96 COG3840 ThiQ ABC-type thiamine 100.0 2.1E-42 4.5E-47 297.5 16.2 177 188-381 2-185 (231)
97 PRK13635 cbiO cobalt transport 100.0 6.5E-42 1.4E-46 325.5 21.2 184 187-381 5-196 (279)
98 COG1127 Ttg2A ABC-type transpo 100.0 2.4E-42 5.1E-47 309.9 16.8 183 186-381 7-201 (263)
99 PRK13632 cbiO cobalt transport 100.0 7E-42 1.5E-46 324.1 21.0 184 187-381 7-198 (271)
100 PRK11153 metN DL-methionine tr 100.0 4E-42 8.7E-47 335.7 19.6 183 188-381 2-196 (343)
101 cd03256 ABC_PhnC_transporter A 100.0 3.8E-42 8.1E-47 320.2 18.6 182 188-381 1-200 (241)
102 TIGR02315 ABC_phnC phosphonate 100.0 5.1E-42 1.1E-46 319.8 19.4 182 188-381 2-201 (243)
103 PRK13637 cbiO cobalt transport 100.0 5.4E-42 1.2E-46 327.3 20.0 186 187-381 2-200 (287)
104 cd03219 ABC_Mj1267_LivG_branch 100.0 3.9E-42 8.5E-47 319.2 18.2 185 188-381 1-198 (236)
105 cd03235 ABC_Metallic_Cations A 100.0 2.3E-42 5E-47 315.9 16.4 174 190-381 2-187 (213)
106 PRK14269 phosphate ABC transpo 100.0 5.4E-42 1.2E-46 320.4 18.8 186 187-381 2-196 (246)
107 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.8E-42 1E-46 315.4 18.2 178 188-381 1-187 (220)
108 PRK10908 cell division protein 100.0 1E-41 2.3E-46 313.6 20.4 182 188-381 2-192 (222)
109 cd03258 ABC_MetN_methionine_tr 100.0 5.8E-42 1.2E-46 317.5 18.7 183 188-381 2-196 (233)
110 cd03296 ABC_CysA_sulfate_impor 100.0 6.8E-42 1.5E-46 318.3 19.2 180 187-381 2-192 (239)
111 PRK13643 cbiO cobalt transport 100.0 8.9E-42 1.9E-46 326.0 20.5 183 188-381 2-199 (288)
112 cd03262 ABC_HisP_GlnQ_permease 100.0 6.4E-42 1.4E-46 312.8 18.6 181 188-381 1-190 (213)
113 cd03301 ABC_MalK_N The N-termi 100.0 8E-42 1.7E-46 312.3 18.9 179 188-381 1-186 (213)
114 PRK11432 fbpC ferric transport 100.0 7.9E-42 1.7E-46 333.8 19.9 180 187-381 6-192 (351)
115 cd03224 ABC_TM1139_LivF_branch 100.0 8.7E-42 1.9E-46 313.9 18.9 182 188-381 1-187 (222)
116 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.2E-42 1.6E-46 318.8 18.3 184 188-381 1-191 (242)
117 PRK14242 phosphate transporter 100.0 1.4E-41 3.1E-46 318.8 20.1 187 186-381 5-203 (253)
118 TIGR01189 ccmA heme ABC export 100.0 1.2E-41 2.7E-46 307.8 18.5 180 188-381 1-182 (198)
119 PRK13646 cbiO cobalt transport 100.0 1.5E-41 3.1E-46 324.3 19.9 188 187-381 2-201 (286)
120 COG1124 DppF ABC-type dipeptid 100.0 1.4E-41 3E-46 306.1 18.4 183 187-380 3-196 (252)
121 PRK13634 cbiO cobalt transport 100.0 1.5E-41 3.3E-46 324.7 19.7 185 187-381 2-201 (290)
122 PRK10584 putative ABC transpor 100.0 1.7E-41 3.7E-46 313.3 19.3 184 187-381 6-202 (228)
123 cd03246 ABCC_Protease_Secretio 100.0 2E-41 4.3E-46 300.1 18.7 150 188-381 1-151 (173)
124 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-41 2.5E-46 318.3 18.1 185 188-381 2-198 (247)
125 cd03231 ABC_CcmA_heme_exporter 100.0 3E-41 6.4E-46 306.1 20.1 178 188-381 1-180 (201)
126 cd03265 ABC_DrrA DrrA is the A 100.0 1.6E-41 3.5E-46 311.9 18.5 180 188-381 1-187 (220)
127 cd03218 ABC_YhbG The ABC trans 100.0 1.7E-41 3.6E-46 314.2 18.7 185 188-381 1-188 (232)
128 PRK13640 cbiO cobalt transport 100.0 3.1E-41 6.7E-46 321.4 20.6 184 187-381 5-199 (282)
129 TIGR03265 PhnT2 putative 2-ami 100.0 1.6E-41 3.5E-46 332.0 18.8 180 187-381 4-190 (353)
130 cd03247 ABCC_cytochrome_bd The 100.0 1.8E-41 3.8E-46 301.8 17.2 152 188-381 1-152 (178)
131 PRK10744 pstB phosphate transp 100.0 2.8E-41 6.1E-46 318.1 19.5 188 185-381 11-210 (260)
132 PRK13636 cbiO cobalt transport 100.0 3.3E-41 7.1E-46 321.4 20.2 183 187-381 5-197 (283)
133 PRK14235 phosphate transporter 100.0 3.1E-41 6.8E-46 319.0 19.7 188 185-381 17-217 (267)
134 TIGR03608 L_ocin_972_ABC putat 100.0 1.9E-41 4.1E-46 308.1 17.4 179 190-381 1-189 (206)
135 PRK10247 putative ABC transpor 100.0 4.9E-41 1.1E-45 309.9 20.4 183 187-381 7-193 (225)
136 PRK13538 cytochrome c biogenes 100.0 3.7E-41 7.9E-46 306.1 19.1 180 188-381 2-184 (204)
137 PRK14259 phosphate ABC transpo 100.0 5.4E-41 1.2E-45 317.7 21.0 187 186-381 12-208 (269)
138 PRK14273 phosphate ABC transpo 100.0 5.4E-41 1.2E-45 315.1 20.7 187 186-381 6-204 (254)
139 PRK13652 cbiO cobalt transport 100.0 5.4E-41 1.2E-45 319.0 20.7 182 188-381 4-193 (277)
140 cd03257 ABC_NikE_OppD_transpor 100.0 4.6E-41 9.9E-46 310.2 19.6 187 188-381 2-201 (228)
141 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.2E-41 9.2E-46 312.4 19.4 184 188-381 2-188 (236)
142 PRK13651 cobalt transporter AT 100.0 4.3E-41 9.3E-46 323.3 20.1 184 187-381 2-220 (305)
143 cd03269 ABC_putative_ATPase Th 100.0 2.2E-41 4.8E-46 308.8 17.1 177 188-381 1-183 (210)
144 PRK13644 cbiO cobalt transport 100.0 6.2E-41 1.3E-45 318.1 20.8 182 188-381 2-191 (274)
145 PRK09536 btuD corrinoid ABC tr 100.0 3.8E-41 8.2E-46 333.3 20.0 182 187-381 3-194 (402)
146 PRK09452 potA putrescine/sperm 100.0 5.8E-41 1.2E-45 330.0 21.1 181 186-381 13-200 (375)
147 PRK13649 cbiO cobalt transport 100.0 4.1E-41 8.9E-46 320.3 19.4 185 187-381 2-200 (280)
148 PRK11247 ssuB aliphatic sulfon 100.0 6.6E-41 1.4E-45 314.7 20.4 176 186-381 11-189 (257)
149 PRK11000 maltose/maltodextrin 100.0 4E-41 8.7E-46 331.4 19.7 180 187-381 3-189 (369)
150 PRK10851 sulfate/thiosulfate t 100.0 4.1E-41 8.8E-46 329.2 19.4 180 187-381 2-192 (353)
151 PRK10575 iron-hydroxamate tran 100.0 4.8E-41 1E-45 317.4 19.3 182 187-381 11-203 (265)
152 cd03298 ABC_ThiQ_thiamine_tran 100.0 8E-41 1.7E-45 305.3 20.0 177 188-381 1-184 (211)
153 PRK13540 cytochrome c biogenes 100.0 7.3E-41 1.6E-45 303.3 19.6 179 188-381 2-182 (200)
154 PRK11231 fecE iron-dicitrate t 100.0 5.3E-41 1.2E-45 315.3 19.3 181 188-381 3-193 (255)
155 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.5E-40 5.5E-45 314.3 24.0 198 161-381 16-214 (282)
156 TIGR03410 urea_trans_UrtE urea 100.0 5.3E-41 1.2E-45 310.5 18.8 182 188-381 1-187 (230)
157 PRK13642 cbiO cobalt transport 100.0 8.1E-41 1.8E-45 317.8 20.5 184 187-381 4-196 (277)
158 PRK13648 cbiO cobalt transport 100.0 8.6E-41 1.9E-45 316.3 20.6 184 187-381 7-198 (269)
159 TIGR03258 PhnT 2-aminoethylpho 100.0 3.7E-41 8E-46 330.2 18.7 181 186-381 4-194 (362)
160 PRK14247 phosphate ABC transpo 100.0 3.4E-41 7.4E-46 315.6 17.6 186 187-381 3-200 (250)
161 TIGR01186 proV glycine betaine 100.0 2.6E-41 5.7E-46 330.6 17.3 169 202-381 6-185 (363)
162 PRK13537 nodulation ABC transp 100.0 4.5E-41 9.8E-46 323.5 18.7 182 186-381 6-193 (306)
163 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3E-41 6.5E-46 319.4 17.1 180 189-381 26-216 (269)
164 PRK09493 glnQ glutamine ABC tr 100.0 5.6E-41 1.2E-45 312.3 18.5 181 188-381 2-191 (240)
165 PRK13645 cbiO cobalt transport 100.0 8.8E-41 1.9E-45 319.4 20.1 187 185-381 4-206 (289)
166 PRK13548 hmuV hemin importer A 100.0 1.4E-40 3E-45 313.1 21.0 181 188-381 3-196 (258)
167 PRK14240 phosphate transporter 100.0 9.9E-41 2.1E-45 312.5 19.7 187 186-381 2-200 (250)
168 TIGR03411 urea_trans_UrtD urea 100.0 9.1E-41 2E-45 311.2 19.3 181 188-381 3-197 (242)
169 TIGR03005 ectoine_ehuA ectoine 100.0 7.6E-41 1.6E-45 313.7 18.8 181 188-381 1-202 (252)
170 PRK14249 phosphate ABC transpo 100.0 1.5E-40 3.3E-45 311.5 20.7 186 187-381 4-201 (251)
171 PRK11831 putative ABC transpor 100.0 6E-41 1.3E-45 317.4 18.1 182 187-381 7-199 (269)
172 PRK11124 artP arginine transpo 100.0 9.1E-41 2E-45 311.3 19.0 182 187-381 2-196 (242)
173 TIGR02982 heterocyst_DevA ABC 100.0 7.1E-41 1.5E-45 307.7 18.0 183 188-381 2-197 (220)
174 PRK13633 cobalt transporter AT 100.0 1.4E-40 3E-45 316.7 20.4 184 187-381 4-200 (280)
175 TIGR01166 cbiO cobalt transpor 100.0 7.8E-41 1.7E-45 300.6 17.5 169 202-381 5-182 (190)
176 PRK14237 phosphate transporter 100.0 1.3E-40 2.8E-45 314.8 19.8 189 184-381 17-217 (267)
177 PRK11300 livG leucine/isoleuci 100.0 1.4E-40 2.9E-45 312.4 19.8 188 187-381 5-209 (255)
178 PRK14267 phosphate ABC transpo 100.0 5.5E-41 1.2E-45 314.8 17.1 186 187-381 4-203 (253)
179 cd03228 ABCC_MRP_Like The MRP 100.0 1.3E-40 2.8E-45 294.3 18.3 150 188-381 1-150 (171)
180 TIGR01288 nodI ATP-binding ABC 100.0 1E-40 2.2E-45 321.0 18.9 181 187-381 4-190 (303)
181 PRK10253 iron-enterobactin tra 100.0 1.2E-40 2.7E-45 314.6 19.1 183 186-381 6-199 (265)
182 PRK11264 putative amino-acid A 100.0 1.1E-40 2.4E-45 312.1 18.6 181 188-381 4-199 (250)
183 PRK13641 cbiO cobalt transport 100.0 1.6E-40 3.5E-45 317.2 20.0 185 187-381 2-200 (287)
184 TIGR03522 GldA_ABC_ATP gliding 100.0 9.8E-41 2.1E-45 320.7 18.6 180 188-381 3-187 (301)
185 TIGR01277 thiQ thiamine ABC tr 100.0 2.2E-40 4.8E-45 303.0 19.7 177 188-381 1-184 (213)
186 PRK13638 cbiO cobalt transport 100.0 1.9E-40 4.1E-45 314.3 19.7 181 188-381 2-191 (271)
187 PRK11614 livF leucine/isoleuci 100.0 1.9E-40 4.1E-45 308.2 19.4 182 187-381 5-192 (237)
188 PRK13539 cytochrome c biogenes 100.0 2.1E-40 4.5E-45 301.9 19.0 178 188-381 3-182 (207)
189 PRK14274 phosphate ABC transpo 100.0 2.5E-40 5.3E-45 311.5 20.0 186 187-381 12-209 (259)
190 PRK11248 tauB taurine transpor 100.0 2.8E-40 6E-45 310.4 19.9 176 188-381 2-184 (255)
191 COG1131 CcmA ABC-type multidru 100.0 1.1E-40 2.3E-45 318.6 17.2 182 187-381 4-192 (293)
192 PRK13639 cbiO cobalt transport 100.0 2.3E-40 4.9E-45 314.4 19.2 182 188-381 2-192 (275)
193 PRK10895 lipopolysaccharide AB 100.0 2.6E-40 5.7E-45 308.0 19.2 186 187-381 3-192 (241)
194 PRK14243 phosphate transporter 100.0 3.4E-40 7.3E-45 311.4 20.0 186 187-381 10-205 (264)
195 PRK14236 phosphate transporter 100.0 3.5E-40 7.6E-45 312.6 20.2 187 186-381 24-222 (272)
196 PRK14261 phosphate ABC transpo 100.0 2.2E-40 4.8E-45 310.7 18.5 186 187-381 6-203 (253)
197 PRK14248 phosphate ABC transpo 100.0 3.5E-40 7.6E-45 312.0 19.9 186 187-381 21-218 (268)
198 PRK14268 phosphate ABC transpo 100.0 2.8E-40 6.1E-45 310.9 19.2 186 187-381 12-208 (258)
199 PRK11607 potG putrescine trans 100.0 3.7E-40 8E-45 324.7 20.8 181 186-381 18-205 (377)
200 PRK14256 phosphate ABC transpo 100.0 3.9E-40 8.5E-45 308.9 20.0 187 186-381 3-202 (252)
201 COG4619 ABC-type uncharacteriz 100.0 4.8E-41 1E-45 285.5 12.4 175 189-375 5-181 (223)
202 PRK14238 phosphate transporter 100.0 2.9E-40 6.3E-45 313.0 19.2 186 187-381 24-221 (271)
203 PRK14254 phosphate ABC transpo 100.0 4.3E-40 9.2E-45 313.9 20.5 187 186-381 38-234 (285)
204 PRK10619 histidine/lysine/argi 100.0 2.2E-40 4.8E-45 311.5 18.2 184 186-381 4-207 (257)
205 TIGR03873 F420-0_ABC_ATP propo 100.0 3.2E-40 6.9E-45 310.2 19.2 181 188-381 2-192 (256)
206 PRK14245 phosphate ABC transpo 100.0 2.4E-40 5.2E-45 310.0 18.2 186 187-381 3-200 (250)
207 PRK14253 phosphate ABC transpo 100.0 3.9E-40 8.4E-45 308.3 19.5 186 187-381 3-199 (249)
208 cd03229 ABC_Class3 This class 100.0 3.3E-40 7.1E-45 293.6 17.7 151 188-381 1-156 (178)
209 PRK14239 phosphate transporter 100.0 4.3E-40 9.3E-45 308.5 19.4 186 187-381 5-202 (252)
210 PRK14251 phosphate ABC transpo 100.0 4.6E-40 9.9E-45 308.2 19.6 186 187-381 4-201 (251)
211 PRK10771 thiQ thiamine transpo 100.0 6.7E-40 1.4E-44 303.6 20.4 177 188-381 2-185 (232)
212 PRK13536 nodulation factor exp 100.0 2.9E-40 6.4E-45 321.6 18.8 181 187-381 41-227 (340)
213 PRK10070 glycine betaine trans 100.0 3.8E-40 8.3E-45 326.0 19.9 167 204-381 43-220 (400)
214 TIGR02769 nickel_nikE nickel i 100.0 3.8E-40 8.2E-45 311.3 19.0 184 188-381 3-206 (265)
215 cd03300 ABC_PotA_N PotA is an 100.0 3.1E-40 6.7E-45 305.9 18.0 179 188-381 1-186 (232)
216 PRK14262 phosphate ABC transpo 100.0 3.5E-40 7.5E-45 308.8 18.4 186 187-381 3-200 (250)
217 cd03233 ABC_PDR_domain1 The pl 100.0 3E-40 6.5E-45 299.8 17.4 163 187-380 3-173 (202)
218 cd03230 ABC_DR_subfamily_A Thi 100.0 4.1E-40 9E-45 291.7 17.9 148 188-381 1-150 (173)
219 PRK14260 phosphate ABC transpo 100.0 2.7E-40 5.9E-45 311.2 17.8 187 186-381 6-204 (259)
220 PRK14244 phosphate ABC transpo 100.0 2.2E-40 4.9E-45 310.3 16.6 185 188-381 6-203 (251)
221 TIGR00968 3a0106s01 sulfate AB 100.0 6.5E-40 1.4E-44 304.7 19.4 179 188-381 1-186 (237)
222 PRK15079 oligopeptide ABC tran 100.0 4.3E-40 9.3E-45 319.5 18.9 184 187-381 8-217 (331)
223 PRK14265 phosphate ABC transpo 100.0 1.1E-39 2.3E-44 309.6 20.9 187 186-381 19-215 (274)
224 PRK14270 phosphate ABC transpo 100.0 8.1E-40 1.7E-44 306.6 19.8 186 187-381 4-201 (251)
225 PRK14271 phosphate ABC transpo 100.0 6E-40 1.3E-44 311.6 18.6 187 186-381 20-217 (276)
226 PRK14241 phosphate transporter 100.0 6.1E-40 1.3E-44 308.6 18.5 186 187-381 4-202 (258)
227 PRK14266 phosphate ABC transpo 100.0 7E-40 1.5E-44 306.7 18.6 186 187-381 3-200 (250)
228 COG1118 CysA ABC-type sulfate/ 100.0 2.6E-40 5.6E-45 305.8 14.9 179 187-380 2-192 (345)
229 TIGR03740 galliderm_ABC gallid 100.0 7.8E-40 1.7E-44 301.4 17.7 177 188-381 1-179 (223)
230 TIGR01978 sufC FeS assembly AT 100.0 6.3E-40 1.4E-44 305.6 16.9 182 188-381 1-199 (243)
231 cd03234 ABCG_White The White s 100.0 6.1E-40 1.3E-44 302.7 16.2 185 188-381 4-198 (226)
232 PRK14264 phosphate ABC transpo 100.0 2E-39 4.4E-44 312.1 20.4 186 187-381 45-254 (305)
233 PRK14275 phosphate ABC transpo 100.0 1.9E-39 4.1E-44 309.7 19.7 187 186-381 38-236 (286)
234 PRK13543 cytochrome c biogenes 100.0 1.7E-39 3.6E-44 297.4 18.4 179 187-381 11-192 (214)
235 PRK14263 phosphate ABC transpo 100.0 2.6E-39 5.6E-44 304.9 20.1 186 187-381 8-203 (261)
236 PRK15112 antimicrobial peptide 100.0 2E-39 4.3E-44 306.7 19.4 184 187-381 4-205 (267)
237 PRK09984 phosphonate/organopho 100.0 1.9E-39 4.2E-44 305.9 19.1 182 187-381 4-208 (262)
238 cd03223 ABCD_peroxisomal_ALDP 100.0 1.7E-39 3.7E-44 285.9 17.4 143 188-381 1-143 (166)
239 PRK13547 hmuV hemin importer A 100.0 2.2E-39 4.8E-44 306.8 19.3 181 188-381 2-210 (272)
240 PRK14252 phosphate ABC transpo 100.0 2.3E-39 5E-44 305.9 19.3 188 185-381 14-215 (265)
241 TIGR01188 drrA daunorubicin re 100.0 1.2E-39 2.6E-44 313.4 17.3 172 196-381 2-179 (302)
242 TIGR02324 CP_lyasePhnL phospho 100.0 2.7E-39 5.9E-44 297.9 18.7 184 188-381 2-204 (224)
243 PRK14255 phosphate ABC transpo 100.0 2.3E-39 4.9E-44 303.6 18.3 186 187-381 5-202 (252)
244 PRK14258 phosphate ABC transpo 100.0 4.3E-39 9.3E-44 303.4 19.9 187 186-381 6-206 (261)
245 cd03299 ABC_ModC_like Archeal 100.0 3.2E-39 7E-44 299.7 18.7 178 188-381 1-185 (235)
246 PRK11308 dppF dipeptide transp 100.0 4.1E-39 8.8E-44 312.3 20.0 184 187-381 5-210 (327)
247 PRK14272 phosphate ABC transpo 100.0 2.9E-39 6.2E-44 302.9 18.2 186 187-381 4-202 (252)
248 PRK11144 modC molybdate transp 100.0 3.6E-39 7.8E-44 316.0 19.4 176 188-381 2-184 (352)
249 PRK13541 cytochrome c biogenes 100.0 4.4E-39 9.6E-44 290.4 18.5 175 188-381 2-178 (195)
250 cd03215 ABC_Carb_Monos_II This 100.0 3.8E-39 8.2E-44 287.8 17.4 150 187-381 4-159 (182)
251 PRK15056 manganese/iron transp 100.0 5.2E-39 1.1E-43 304.6 19.3 180 187-381 6-197 (272)
252 cd03213 ABCG_EPDR ABCG transpo 100.0 2.6E-39 5.6E-44 291.8 16.1 156 187-381 3-166 (194)
253 COG0410 LivF ABC-type branched 100.0 5.4E-39 1.2E-43 287.5 17.5 180 187-375 3-184 (237)
254 PRK14246 phosphate ABC transpo 100.0 4.4E-39 9.5E-44 302.6 17.3 187 186-381 9-207 (257)
255 PRK11701 phnK phosphonate C-P 100.0 8.2E-39 1.8E-43 301.0 19.2 186 187-381 6-207 (258)
256 PRK11022 dppD dipeptide transp 100.0 6.6E-39 1.4E-43 310.9 18.7 186 188-381 4-209 (326)
257 COG4555 NatA ABC-type Na+ tran 100.0 5.8E-40 1.3E-44 286.7 10.0 181 188-381 2-188 (245)
258 TIGR03415 ABC_choXWV_ATP choli 100.0 7.3E-39 1.6E-43 314.8 18.5 177 192-381 29-220 (382)
259 cd03232 ABC_PDR_domain2 The pl 100.0 4.9E-39 1.1E-43 289.5 15.8 155 187-381 3-163 (192)
260 TIGR02142 modC_ABC molybdenum 100.0 9.2E-39 2E-43 313.4 19.0 175 192-381 4-187 (354)
261 cd03297 ABC_ModC_molybdenum_tr 100.0 6.1E-39 1.3E-43 293.6 16.3 174 192-381 5-187 (214)
262 PRK09473 oppD oligopeptide tra 100.0 1.4E-38 2.9E-43 309.1 18.6 187 187-381 12-217 (330)
263 PRK09544 znuC high-affinity zi 100.0 2.4E-38 5.1E-43 296.6 19.6 168 187-381 4-176 (251)
264 COG4615 PvdE ABC-type sideroph 100.0 3E-36 6.5E-41 285.9 33.5 359 3-380 140-503 (546)
265 PRK15093 antimicrobial peptide 100.0 1.7E-38 3.7E-43 308.8 18.6 187 187-381 3-214 (330)
266 PRK10419 nikE nickel transport 100.0 2.6E-38 5.6E-43 299.2 18.8 187 188-381 4-207 (268)
267 PRK10418 nikD nickel transport 100.0 1.9E-38 4.1E-43 297.9 17.7 182 187-381 4-196 (254)
268 COG1137 YhbG ABC-type (unclass 100.0 6.2E-40 1.3E-44 286.2 6.9 176 187-375 4-187 (243)
269 PRK15439 autoinducer 2 ABC tra 100.0 2.7E-38 5.8E-43 324.6 20.0 182 187-381 11-195 (510)
270 cd03214 ABC_Iron-Siderophores_ 100.0 1.6E-38 3.5E-43 283.3 15.6 151 189-381 1-153 (180)
271 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.4E-38 7.4E-43 285.8 17.6 154 188-381 1-159 (200)
272 TIGR02323 CP_lyasePhnK phospho 100.0 4.4E-38 9.5E-43 295.1 18.9 186 187-381 3-204 (253)
273 cd03267 ABC_NatA_like Similar 100.0 2E-38 4.4E-43 294.5 16.4 168 202-381 34-209 (236)
274 CHL00131 ycf16 sulfate ABC tra 100.0 4.9E-38 1.1E-42 294.5 19.0 183 187-381 7-206 (252)
275 PRK13549 xylose transporter AT 100.0 5.9E-38 1.3E-42 321.9 19.3 182 187-381 5-198 (506)
276 PRK11288 araG L-arabinose tran 100.0 6.7E-38 1.4E-42 321.2 19.1 182 187-381 4-195 (501)
277 PRK09700 D-allose transporter 100.0 4.6E-38 1E-42 323.1 17.4 182 187-381 5-200 (510)
278 PRK09580 sufC cysteine desulfu 100.0 1.8E-37 3.8E-42 290.1 19.5 183 188-381 2-200 (248)
279 PRK10762 D-ribose transporter 100.0 6.3E-38 1.4E-42 321.3 17.8 182 187-381 4-196 (501)
280 cd03216 ABC_Carb_Monos_I This 100.0 1.3E-37 2.9E-42 273.0 17.3 135 188-381 1-137 (163)
281 TIGR01184 ntrCD nitrate transp 100.0 1.2E-37 2.6E-42 288.2 16.4 161 205-381 1-170 (230)
282 PRK03695 vitamin B12-transport 100.0 3.9E-37 8.4E-42 288.0 18.6 175 189-381 2-188 (248)
283 PRK10938 putative molybdenum t 100.0 3.1E-37 6.6E-42 315.6 18.7 177 188-381 4-190 (490)
284 PRK10261 glutathione transport 100.0 5E-37 1.1E-41 321.8 20.3 184 187-381 313-519 (623)
285 PRK10982 galactose/methyl gala 100.0 2.4E-37 5.1E-42 316.4 16.3 183 190-381 1-189 (491)
286 COG4181 Predicted ABC-type tra 100.0 2.4E-37 5.3E-42 263.7 13.5 178 187-375 6-194 (228)
287 TIGR02633 xylG D-xylose ABC tr 100.0 7.6E-37 1.6E-41 313.4 19.4 185 188-381 2-196 (500)
288 COG4525 TauB ABC-type taurine 100.0 2.3E-37 5E-42 269.1 12.8 173 187-375 3-180 (259)
289 TIGR02770 nickel_nikD nickel i 100.0 6.7E-37 1.5E-41 283.2 15.4 168 204-381 1-181 (230)
290 COG4559 ABC-type hemin transpo 100.0 1.4E-36 3E-41 267.5 16.2 176 188-376 2-190 (259)
291 PRK09700 D-allose transporter 100.0 9.6E-37 2.1E-41 313.3 17.0 184 187-381 265-464 (510)
292 COG4175 ProV ABC-type proline/ 100.0 8.7E-37 1.9E-41 282.9 14.8 184 187-381 4-220 (386)
293 PRK15134 microcin C ABC transp 100.0 2.1E-36 4.7E-41 312.0 19.3 187 187-381 5-212 (529)
294 TIGR03269 met_CoM_red_A2 methy 100.0 1.3E-36 2.8E-41 313.0 16.7 188 187-381 279-483 (520)
295 TIGR03269 met_CoM_red_A2 methy 100.0 1.7E-36 3.6E-41 312.2 17.3 181 188-381 1-224 (520)
296 PRK15134 microcin C ABC transp 100.0 1.3E-36 2.8E-41 313.6 16.3 183 187-381 275-481 (529)
297 PRK13549 xylose transporter AT 100.0 1.7E-36 3.6E-41 311.2 16.8 188 187-381 259-460 (506)
298 PRK10261 glutathione transport 100.0 3.1E-36 6.8E-41 315.7 19.0 187 187-381 12-224 (623)
299 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.6E-36 5.6E-41 278.3 16.1 170 188-381 23-197 (224)
300 TIGR01257 rim_protein retinal- 100.0 3.6E-36 7.9E-41 339.7 20.5 184 186-381 927-1115(2272)
301 PRK10535 macrolide transporter 100.0 8E-36 1.7E-40 313.8 20.8 184 187-381 4-199 (648)
302 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.2E-36 9.1E-41 280.4 16.4 163 195-381 1-171 (246)
303 COG1123 ATPase components of v 100.0 4.5E-36 9.9E-41 300.2 17.4 184 186-380 279-484 (539)
304 COG0411 LivG ABC-type branched 100.0 1.1E-36 2.3E-41 274.7 11.6 180 188-380 5-204 (250)
305 COG4598 HisP ABC-type histidin 100.0 1.3E-36 2.9E-41 261.1 11.4 181 186-380 5-206 (256)
306 TIGR02633 xylG D-xylose ABC tr 100.0 4.1E-36 8.9E-41 308.0 16.8 184 187-381 257-458 (500)
307 PLN03211 ABC transporter G-25; 100.0 1.1E-35 2.3E-40 312.2 20.0 169 202-381 81-261 (659)
308 TIGR03771 anch_rpt_ABC anchore 100.0 5.9E-36 1.3E-40 275.7 15.1 156 210-381 1-168 (223)
309 COG1129 MglA ABC-type sugar tr 100.0 3.3E-35 7.2E-40 292.2 20.5 183 187-380 8-199 (500)
310 TIGR00955 3a01204 The Eye Pigm 100.0 1.1E-35 2.5E-40 311.2 16.0 173 201-381 37-221 (617)
311 PF00005 ABC_tran: ABC transpo 100.0 6.3E-36 1.4E-40 254.1 11.4 136 205-356 1-137 (137)
312 TIGR00956 3a01205 Pleiotropic 100.0 2.2E-35 4.9E-40 331.1 18.4 184 187-381 759-957 (1394)
313 TIGR01257 rim_protein retinal- 100.0 3.7E-35 8.1E-40 331.5 20.1 184 186-381 1936-2125(2272)
314 PRK13546 teichoic acids export 100.0 5.5E-35 1.2E-39 275.6 17.7 156 202-381 37-198 (264)
315 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.5E-35 3.3E-40 277.9 13.8 176 192-381 5-194 (255)
316 PRK10762 D-ribose transporter 100.0 2E-35 4.4E-40 302.8 15.9 181 187-381 257-450 (501)
317 PRK11288 araG L-arabinose tran 100.0 3E-35 6.5E-40 301.6 15.6 182 187-381 257-451 (501)
318 COG0444 DppD ABC-type dipeptid 100.0 6.2E-35 1.3E-39 273.8 15.8 182 188-380 2-208 (316)
319 COG3845 ABC-type uncharacteriz 100.0 7.5E-35 1.6E-39 284.6 16.4 186 187-381 4-195 (501)
320 PRK15064 ABC transporter ATP-b 100.0 1.1E-34 2.4E-39 299.3 18.5 177 188-381 2-207 (530)
321 PRK10938 putative molybdenum t 100.0 5.6E-35 1.2E-39 298.9 15.8 182 187-380 260-456 (490)
322 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.6E-34 3.5E-39 248.3 15.6 122 188-381 1-122 (144)
323 PRK15064 ABC transporter ATP-b 100.0 2E-34 4.3E-39 297.4 19.3 168 187-381 319-490 (530)
324 PRK13545 tagH teichoic acids e 100.0 2.7E-34 5.9E-39 288.5 19.6 171 187-381 21-198 (549)
325 PRK11819 putative ABC transpor 100.0 1.2E-34 2.7E-39 300.3 16.9 178 187-381 6-215 (556)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.8E-34 6E-39 297.6 19.2 178 187-381 4-213 (552)
327 KOG0060 Long-chain acyl-CoA tr 100.0 1.8E-32 3.9E-37 271.1 30.5 339 26-373 242-616 (659)
328 COG1123 ATPase components of v 100.0 2.4E-34 5.1E-39 287.9 17.4 185 187-380 5-209 (539)
329 PRK10982 galactose/methyl gala 100.0 2.8E-34 6E-39 293.8 16.0 184 187-381 250-446 (491)
330 PRK15439 autoinducer 2 ABC tra 100.0 3.2E-34 7E-39 294.4 16.1 181 187-381 268-458 (510)
331 COG4608 AppF ABC-type oligopep 100.0 2.6E-34 5.7E-39 264.3 13.6 146 187-375 4-157 (268)
332 COG4161 ArtP ABC-type arginine 100.0 1.8E-34 3.8E-39 244.1 11.4 176 187-375 2-189 (242)
333 COG4148 ModC ABC-type molybdat 100.0 2.2E-34 4.8E-39 262.8 12.4 158 206-376 15-177 (352)
334 PRK13409 putative ATPase RIL; 100.0 9.5E-34 2.1E-38 294.0 18.4 167 187-381 340-509 (590)
335 COG4604 CeuD ABC-type enteroch 100.0 1.6E-34 3.4E-39 251.8 10.4 180 188-380 2-190 (252)
336 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.9E-33 4.1E-38 245.0 16.6 133 190-381 2-135 (157)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-33 3.8E-38 291.6 19.1 170 187-381 322-495 (552)
338 PRK11819 putative ABC transpor 100.0 2.3E-33 5E-38 290.8 19.1 169 187-380 324-496 (556)
339 PRK15177 Vi polysaccharide exp 100.0 1E-33 2.2E-38 259.0 14.5 154 204-381 2-158 (213)
340 TIGR01187 potA spermidine/putr 100.0 8.3E-34 1.8E-38 275.3 14.3 149 220-381 1-156 (325)
341 PRK11147 ABC transporter ATPas 100.0 2.9E-33 6.3E-38 294.1 18.8 169 187-381 319-492 (635)
342 COG4172 ABC-type uncharacteriz 100.0 4.1E-33 8.8E-38 265.5 17.6 179 186-376 275-475 (534)
343 PLN03140 ABC transporter G fam 100.0 6.9E-33 1.5E-37 310.6 21.0 185 187-381 867-1074(1470)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 3.8E-33 8.1E-38 247.2 14.3 122 191-381 4-127 (177)
345 COG4152 ABC-type uncharacteriz 100.0 2.8E-33 6.1E-38 251.3 13.0 182 187-381 2-185 (300)
346 COG4136 ABC-type uncharacteriz 100.0 3.4E-33 7.4E-38 233.6 11.8 169 187-370 2-177 (213)
347 PRK10636 putative ABC transpor 100.0 2.5E-32 5.4E-37 286.7 18.2 167 187-381 312-482 (638)
348 PLN03073 ABC transporter F fam 100.0 2.6E-32 5.7E-37 288.2 18.3 170 186-381 507-679 (718)
349 PRK13409 putative ATPase RIL; 100.0 3.8E-33 8.1E-38 289.6 11.2 172 192-381 78-266 (590)
350 COG4133 CcmA ABC-type transpor 100.0 1.2E-32 2.7E-37 238.7 11.1 174 188-375 3-178 (209)
351 COG1119 ModF ABC-type molybden 100.0 5.9E-32 1.3E-36 244.0 15.2 177 186-375 30-219 (257)
352 PRK10636 putative ABC transpor 100.0 6.6E-32 1.4E-36 283.5 17.7 177 188-381 2-201 (638)
353 COG1101 PhnK ABC-type uncharac 100.0 2.8E-32 6.2E-37 240.8 11.5 172 201-374 18-195 (263)
354 TIGR00956 3a01205 Pleiotropic 100.0 7.1E-32 1.5E-36 303.0 14.6 172 202-381 74-265 (1394)
355 KOG0061 Transporter, ABC super 100.0 1.5E-31 3.3E-36 278.2 15.6 186 186-381 24-225 (613)
356 COG0488 Uup ATPase components 100.0 3.7E-31 8.1E-36 269.0 16.3 177 187-381 3-205 (530)
357 cd03238 ABC_UvrA The excision 100.0 1E-30 2.3E-35 231.4 15.3 135 201-381 7-144 (176)
358 PRK11147 ABC transporter ATPas 100.0 9.8E-31 2.1E-35 275.0 17.1 176 187-381 3-208 (635)
359 PLN03140 ABC transporter G fam 100.0 4.4E-31 9.5E-36 296.1 12.7 177 202-381 178-392 (1470)
360 COG0396 sufC Cysteine desulfur 100.0 7.2E-30 1.6E-34 228.1 17.2 182 187-379 3-197 (251)
361 COG4674 Uncharacterized ABC-ty 100.0 1.2E-30 2.6E-35 227.2 11.7 181 187-380 5-200 (249)
362 COG4778 PhnL ABC-type phosphon 100.0 2.9E-30 6.3E-35 220.2 9.6 178 187-375 4-200 (235)
363 PLN03073 ABC transporter F fam 100.0 1.1E-29 2.3E-34 268.5 14.8 189 186-381 176-396 (718)
364 COG4167 SapF ABC-type antimicr 100.0 1.7E-29 3.7E-34 217.9 11.3 175 188-374 5-196 (267)
365 COG4172 ABC-type uncharacteriz 100.0 7.4E-29 1.6E-33 236.5 14.5 181 187-375 6-205 (534)
366 COG0488 Uup ATPase components 100.0 4.3E-28 9.3E-33 246.6 20.4 166 186-375 320-487 (530)
367 KOG0064 Peroxisomal long-chain 100.0 1.1E-26 2.5E-31 227.4 24.4 334 25-373 279-658 (728)
368 cd03278 ABC_SMC_barmotin Barmo 99.9 5.1E-28 1.1E-32 218.6 9.7 145 206-381 14-171 (197)
369 COG4586 ABC-type uncharacteriz 99.9 1.6E-27 3.4E-32 217.5 9.7 171 202-380 37-211 (325)
370 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.1E-27 6.7E-32 220.2 10.7 173 187-380 3-215 (243)
371 COG1134 TagH ABC-type polysacc 99.9 2.1E-26 4.5E-31 208.4 14.9 158 202-381 40-202 (249)
372 KOG0059 Lipid exporter ABCA1 a 99.9 6.9E-27 1.5E-31 253.0 14.1 180 186-377 563-748 (885)
373 COG4107 PhnK ABC-type phosphon 99.9 6.6E-27 1.4E-31 200.4 10.9 177 187-375 6-199 (258)
374 cd03270 ABC_UvrA_I The excisio 99.9 3.4E-26 7.3E-31 211.1 12.4 165 201-381 7-194 (226)
375 cd03279 ABC_sbcCD SbcCD and ot 99.9 3E-26 6.5E-31 209.6 9.1 169 187-381 5-188 (213)
376 cd03273 ABC_SMC2_euk Eukaryoti 99.9 3.8E-25 8.3E-30 207.3 10.5 166 215-381 25-224 (251)
377 KOG0065 Pleiotropic drug resis 99.9 5.7E-25 1.2E-29 235.4 12.9 182 189-380 789-984 (1391)
378 KOG0927 Predicted transporter 99.9 3.6E-25 7.7E-30 218.0 9.3 169 185-376 387-558 (614)
379 cd03271 ABC_UvrA_II The excisi 99.9 1.1E-24 2.3E-29 204.3 11.9 166 203-381 9-227 (261)
380 cd03240 ABC_Rad50 The catalyti 99.9 2.2E-24 4.8E-29 195.9 10.5 143 209-381 17-178 (204)
381 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4.2E-25 9.1E-30 201.8 3.8 165 187-380 5-184 (212)
382 COG4138 BtuD ABC-type cobalami 99.9 1.7E-24 3.7E-29 185.8 5.9 175 188-381 4-187 (248)
383 COG1129 MglA ABC-type sugar tr 99.9 7.6E-23 1.6E-27 204.0 14.8 186 187-381 263-456 (500)
384 KOG0066 eIF2-interacting prote 99.9 1.2E-22 2.6E-27 195.5 11.7 167 186-377 585-754 (807)
385 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.1E-22 4.5E-27 188.3 7.9 186 187-381 3-214 (247)
386 KOG0062 ATPase component of AB 99.9 6.5E-22 1.4E-26 194.1 10.0 168 185-380 78-249 (582)
387 COG3845 ABC-type uncharacteriz 99.8 2.6E-20 5.7E-25 182.8 17.8 184 186-379 256-456 (501)
388 PRK00635 excinuclease ABC subu 99.8 8.1E-21 1.8E-25 212.7 15.1 180 187-381 600-867 (1809)
389 KOG0062 ATPase component of AB 99.8 4.1E-21 8.9E-26 188.5 10.7 173 185-378 360-533 (582)
390 COG1245 Predicted ATPase, RNas 99.8 1E-20 2.2E-25 183.4 12.5 155 194-375 342-503 (591)
391 KOG0927 Predicted transporter 99.8 8.2E-21 1.8E-25 187.4 11.8 186 185-376 73-270 (614)
392 cd03276 ABC_SMC6_euk Eukaryoti 99.8 6.4E-21 1.4E-25 172.4 9.3 145 205-375 12-161 (198)
393 PRK00349 uvrA excinuclease ABC 99.8 2.5E-20 5.4E-25 200.8 13.9 66 316-381 818-888 (943)
394 TIGR00630 uvra excinuclease AB 99.8 3.9E-19 8.5E-24 191.2 16.4 66 316-381 816-886 (924)
395 cd03239 ABC_SMC_head The struc 99.8 1.4E-18 3.1E-23 154.4 11.2 66 310-381 83-153 (178)
396 KOG2355 Predicted ABC-type tra 99.8 2.3E-18 5.1E-23 151.6 12.2 179 185-380 11-202 (291)
397 COG4170 SapD ABC-type antimicr 99.8 1.6E-18 3.4E-23 153.2 10.2 177 188-375 4-206 (330)
398 KOG0065 Pleiotropic drug resis 99.8 9.9E-19 2.1E-23 188.0 9.5 169 202-380 128-315 (1391)
399 COG1245 Predicted ATPase, RNas 99.8 2E-18 4.4E-23 167.5 9.1 170 192-380 79-267 (591)
400 cd00820 PEPCK_HprK Phosphoenol 99.7 2.8E-18 6.1E-23 138.4 5.9 75 203-285 3-77 (107)
401 COG2401 ABC-type ATPase fused 99.7 1.7E-17 3.7E-22 159.4 11.4 154 203-380 397-562 (593)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.7 2E-17 4.2E-22 151.3 10.5 153 206-375 15-178 (213)
403 cd03280 ABC_MutS2 MutS2 homolo 99.7 2.7E-17 5.8E-22 149.0 9.7 119 205-381 17-146 (200)
404 cd03241 ABC_RecN RecN ATPase i 99.7 7.5E-17 1.6E-21 153.3 10.9 55 327-381 170-228 (276)
405 cd03283 ABC_MutS-like MutS-lik 99.7 2E-17 4.3E-22 149.7 6.0 126 202-380 14-142 (199)
406 cd03242 ABC_RecF RecF is a rec 99.7 5E-16 1.1E-20 147.1 11.3 163 205-373 12-238 (270)
407 cd03227 ABC_Class2 ABC-type Cl 99.7 2.9E-16 6.3E-21 137.5 8.5 115 209-380 15-135 (162)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.1E-15 2.4E-20 140.6 7.7 125 202-381 17-148 (222)
409 cd01128 rho_factor Transcripti 99.6 3.4E-15 7.4E-20 139.2 9.3 145 208-365 9-173 (249)
410 COG0178 UvrA Excinuclease ATPa 99.6 2.9E-14 6.4E-19 147.1 13.4 65 316-380 810-879 (935)
411 KOG0066 eIF2-interacting prote 99.5 6E-15 1.3E-19 142.7 5.1 177 187-375 264-460 (807)
412 PRK00635 excinuclease ABC subu 99.5 4.9E-14 1.1E-18 158.9 12.4 66 316-381 1687-1757(1809)
413 cd03243 ABC_MutS_homologs The 99.5 1.7E-14 3.8E-19 130.8 6.1 121 208-380 22-145 (202)
414 TIGR00606 rad50 rad50. This fa 99.5 4.6E-14 1E-18 159.5 10.8 94 274-374 1153-1252(1311)
415 KOG0063 RNAse L inhibitor, ABC 99.5 1.2E-13 2.6E-18 133.5 11.4 153 195-373 343-502 (592)
416 cd03282 ABC_MSH4_euk MutS4 hom 99.5 6.8E-14 1.5E-18 127.0 9.0 127 202-380 16-145 (204)
417 PF00664 ABC_membrane: ABC tra 99.5 2.3E-12 5E-17 118.9 18.9 140 3-142 134-275 (275)
418 PTZ00132 GTP-binding nuclear p 99.5 1E-13 2.3E-18 126.6 6.9 44 331-374 156-204 (215)
419 TIGR02858 spore_III_AA stage I 99.4 5.6E-13 1.2E-17 125.7 11.1 112 216-381 112-224 (270)
420 TIGR01069 mutS2 MutS2 family p 99.4 3.1E-12 6.7E-17 136.7 11.9 135 187-380 295-439 (771)
421 PRK00064 recF recombination pr 99.4 4.1E-12 8.8E-17 125.2 11.1 48 326-373 272-328 (361)
422 cd03284 ABC_MutS1 MutS1 homolo 99.3 2.5E-12 5.3E-17 117.9 8.4 123 202-380 18-147 (216)
423 PF02463 SMC_N: RecF/RecN/SMC 99.3 4.5E-12 9.9E-17 116.2 8.6 53 327-379 136-192 (220)
424 cd03281 ABC_MSH5_euk MutS5 hom 99.3 8.8E-12 1.9E-16 114.0 10.4 117 203-374 17-138 (213)
425 PRK00349 uvrA excinuclease ABC 99.2 5.8E-12 1.3E-16 136.4 4.1 66 316-381 477-546 (943)
426 TIGR03238 dnd_assoc_3 dnd syst 99.2 8.7E-12 1.9E-16 124.1 4.3 67 203-272 20-87 (504)
427 TIGR00630 uvra excinuclease AB 99.2 1.3E-11 2.9E-16 133.4 4.7 66 316-381 475-544 (924)
428 PRK14079 recF recombination pr 99.2 1.6E-10 3.5E-15 113.4 11.1 48 326-373 262-318 (349)
429 smart00534 MUTSac ATPase domai 99.2 3.9E-11 8.5E-16 107.3 5.9 55 325-380 59-116 (185)
430 PHA02562 46 endonuclease subun 99.1 4.5E-11 9.8E-16 124.6 5.1 83 297-381 433-532 (562)
431 KOG0063 RNAse L inhibitor, ABC 99.1 8.8E-11 1.9E-15 114.0 6.0 147 213-375 98-261 (592)
432 PRK08533 flagellar accessory p 99.1 6.9E-10 1.5E-14 102.7 11.8 139 188-380 8-157 (230)
433 cd03287 ABC_MSH3_euk MutS3 hom 99.1 4.1E-10 8.8E-15 103.5 8.2 48 202-249 18-66 (222)
434 PRK00409 recombination and DNA 99.1 1.3E-09 2.9E-14 116.9 13.1 55 325-380 388-444 (782)
435 PRK07721 fliI flagellum-specif 99.0 4.5E-09 9.8E-14 105.5 13.5 141 202-374 146-296 (438)
436 TIGR00767 rho transcription te 99.0 1.8E-09 4E-14 106.0 10.0 82 155-242 103-195 (415)
437 PRK06793 fliI flagellum-specif 99.0 1.6E-09 3.4E-14 108.1 8.8 135 187-372 130-271 (432)
438 TIGR02788 VirB11 P-type DNA tr 98.9 6E-09 1.3E-13 100.6 10.5 42 208-249 137-178 (308)
439 PRK06002 fliI flagellum-specif 98.9 2.3E-09 4.9E-14 107.1 7.4 98 185-284 137-250 (450)
440 smart00382 AAA ATPases associa 98.9 4.9E-08 1.1E-12 80.9 13.8 100 214-368 1-101 (148)
441 PRK10733 hflB ATP-dependent me 98.9 4.5E-11 9.8E-16 126.0 -5.9 198 11-241 5-211 (644)
442 PRK00300 gmk guanylate kinase; 98.9 1.3E-09 2.9E-14 98.6 4.2 66 213-283 3-80 (205)
443 TIGR00634 recN DNA repair prot 98.8 6.1E-09 1.3E-13 108.6 7.0 56 326-381 439-498 (563)
444 PRK10869 recombination and rep 98.8 8.6E-09 1.9E-13 106.9 7.8 55 327-381 430-488 (553)
445 PRK07196 fliI flagellum-specif 98.8 6E-09 1.3E-13 104.0 4.6 82 202-284 143-234 (434)
446 cd01120 RecA-like_NTPases RecA 98.8 5.2E-08 1.1E-12 83.8 9.7 120 217-380 1-131 (165)
447 cd01130 VirB11-like_ATPase Typ 98.7 1.2E-08 2.6E-13 91.3 5.0 78 204-284 14-94 (186)
448 PRK01889 GTPase RsgA; Reviewed 98.7 1.2E-08 2.5E-13 100.5 5.3 82 204-288 184-265 (356)
449 PRK13695 putative NTPase; Prov 98.7 3E-08 6.6E-13 87.6 6.1 54 324-380 75-130 (174)
450 cd03286 ABC_MSH6_euk MutS6 hom 98.7 8.3E-08 1.8E-12 88.0 9.1 38 202-239 17-54 (218)
451 cd01131 PilT Pilus retraction 98.7 8.9E-08 1.9E-12 86.6 8.8 36 217-252 3-39 (198)
452 TIGR02524 dot_icm_DotB Dot/Icm 98.7 4.5E-08 9.7E-13 96.2 7.4 89 213-303 132-233 (358)
453 cd01124 KaiC KaiC is a circadi 98.7 1.2E-07 2.7E-12 84.2 9.3 65 316-380 60-134 (187)
454 PF13304 AAA_21: AAA domain; P 98.7 2.7E-08 6E-13 91.1 5.3 50 326-375 235-287 (303)
455 PRK06995 flhF flagellar biosyn 98.6 5.4E-08 1.2E-12 98.5 6.4 61 206-285 247-307 (484)
456 cd02023 UMPK Uridine monophosp 98.6 3.7E-08 8E-13 88.8 4.1 108 217-360 1-113 (198)
457 PRK10246 exonuclease subunit S 98.6 8.4E-08 1.8E-12 106.7 7.3 58 324-381 946-1012(1047)
458 PRK06067 flagellar accessory p 98.6 6.4E-07 1.4E-11 83.0 11.5 54 327-380 100-159 (234)
459 PRK10078 ribose 1,5-bisphospho 98.5 9.3E-08 2E-12 85.5 5.5 57 214-273 1-57 (186)
460 PRK08149 ATP synthase SpaL; Va 98.5 7.2E-08 1.6E-12 96.2 5.0 70 202-272 139-215 (428)
461 TIGR00618 sbcc exonuclease Sbc 98.5 1.2E-07 2.6E-12 105.7 7.3 57 324-380 947-1014(1042)
462 TIGR02168 SMC_prok_B chromosom 98.5 1.1E-07 2.3E-12 107.2 6.4 58 324-381 1086-1147(1179)
463 PRK09825 idnK D-gluconate kina 98.5 1.6E-07 3.4E-12 83.4 5.0 65 214-284 2-68 (176)
464 TIGR00235 udk uridine kinase. 98.5 1E-07 2.2E-12 86.7 3.9 29 213-241 4-32 (207)
465 TIGR00101 ureG urease accessor 98.5 3.4E-07 7.4E-12 82.8 7.0 106 217-332 3-108 (199)
466 PRK01156 chromosome segregatio 98.5 2.4E-07 5.1E-12 102.0 7.0 50 324-373 798-853 (895)
467 TIGR02322 phosphon_PhnN phosph 98.5 3.6E-07 7.8E-12 80.9 6.7 62 215-277 1-78 (179)
468 PRK03918 chromosome segregatio 98.4 2.7E-07 5.9E-12 101.3 6.8 56 325-380 786-848 (880)
469 PRK13830 conjugal transfer pro 98.4 1.5E-06 3.2E-11 94.5 11.9 39 342-380 649-689 (818)
470 PRK06315 type III secretion sy 98.4 2.5E-07 5.3E-12 92.8 5.0 103 203-306 153-276 (442)
471 TIGR02903 spore_lon_C ATP-depe 98.4 1.1E-06 2.3E-11 92.6 9.5 111 213-372 173-291 (615)
472 PLN02796 D-glycerate 3-kinase 98.4 1.5E-07 3.2E-12 91.2 2.5 61 203-263 80-151 (347)
473 TIGR02169 SMC_prok_A chromosom 98.4 4.1E-07 8.9E-12 102.5 6.4 65 316-380 1057-1131(1164)
474 TIGR01420 pilT_fam pilus retra 98.4 3.4E-06 7.3E-11 82.8 11.6 38 212-249 119-157 (343)
475 PRK15494 era GTPase Era; Provi 98.3 4.3E-07 9.3E-12 88.9 3.9 56 183-239 14-76 (339)
476 TIGR03263 guanyl_kin guanylate 98.3 5.2E-07 1.1E-11 79.9 4.1 26 215-240 1-26 (180)
477 COG3910 Predicted ATPase [Gene 98.3 6.2E-06 1.3E-10 72.6 10.4 49 326-375 128-176 (233)
478 PRK13891 conjugal transfer pro 98.3 2.3E-05 5E-10 85.6 16.8 43 338-380 680-724 (852)
479 PRK10416 signal recognition pa 98.3 7.7E-07 1.7E-11 86.2 4.8 72 213-284 112-190 (318)
480 cd01876 YihA_EngB The YihA (En 98.3 3E-06 6.5E-11 72.7 8.1 50 320-373 115-169 (170)
481 TIGR00611 recf recF protein. A 98.3 8.9E-07 1.9E-11 87.5 5.2 48 326-373 274-330 (365)
482 PRK09862 putative ATP-dependen 98.2 9.3E-07 2E-11 90.3 4.9 64 190-255 187-250 (506)
483 PF13555 AAA_29: P-loop contai 98.2 9E-07 2E-11 64.2 3.4 39 205-243 12-51 (62)
484 PRK07594 type III secretion sy 98.2 1.1E-06 2.3E-11 88.1 4.9 68 186-255 128-195 (433)
485 cd01125 repA Hexameric Replica 98.2 2.5E-06 5.5E-11 79.3 6.9 38 342-380 108-153 (239)
486 PRK03846 adenylylsulfate kinas 98.2 1.2E-06 2.5E-11 79.2 4.3 56 213-272 22-78 (198)
487 PRK00454 engB GTP-binding prot 98.2 7.9E-07 1.7E-11 79.4 3.1 53 320-376 140-195 (196)
488 PRK09270 nucleoside triphospha 98.2 1.7E-06 3.6E-11 80.0 5.3 34 213-246 31-64 (229)
489 PF13558 SbcCD_C: Putative exo 98.2 2.2E-06 4.7E-11 67.5 5.1 57 316-372 21-90 (90)
490 TIGR03497 FliI_clade2 flagella 98.2 1.8E-06 3.8E-11 86.3 5.5 53 202-255 125-177 (413)
491 cd01136 ATPase_flagellum-secre 98.2 1.7E-06 3.6E-11 83.8 5.0 51 202-253 57-107 (326)
492 cd00071 GMPK Guanosine monopho 98.2 1.1E-06 2.4E-11 74.7 3.3 74 217-301 1-87 (137)
493 PRK05480 uridine/cytidine kina 98.2 4E-06 8.6E-11 76.2 6.7 44 213-277 4-47 (209)
494 PLN02318 phosphoribulokinase/u 98.2 1.9E-06 4.2E-11 88.4 5.0 61 216-284 66-127 (656)
495 cd02026 PRK Phosphoribulokinas 98.1 2.6E-06 5.5E-11 80.9 4.7 55 217-273 1-55 (273)
496 TIGR02680 conserved hypothetic 98.1 4.3E-06 9.4E-11 95.2 7.3 56 324-381 1244-1311(1353)
497 TIGR00606 rad50 rad50. This fa 98.1 6.5E-06 1.4E-10 93.9 8.7 141 187-345 5-152 (1311)
498 PRK13898 type IV secretion sys 98.1 6.5E-05 1.4E-09 81.8 16.0 46 207-252 438-483 (800)
499 PRK09099 type III secretion sy 98.1 4.4E-06 9.6E-11 83.9 5.4 52 202-254 151-202 (441)
500 TIGR03498 FliI_clade3 flagella 98.1 3.6E-06 7.7E-11 84.2 4.5 53 203-256 129-181 (418)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-87 Score=676.26 Aligned_cols=377 Identities=41% Similarity=0.580 Sum_probs=347.0
Q ss_pred EeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 016798 2 ATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (382)
Q Consensus 2 ~~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (382)
..+|+++||.|++++++.+|+++++..++++..++.+++.+++.++.++...|.+.+++|||+|+.|..+..||.+..++
T Consensus 280 ~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~ 359 (716)
T KOG0058|consen 280 LGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLRE 359 (716)
T ss_pred HHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 82 DLCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
..+...+.......+..... ......+.++++|++++..|++|.|.+++|+.|..++-.++..++..|.++.++..+.+
T Consensus 360 ~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~ 439 (716)
T KOG0058|consen 360 VLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASE 439 (716)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 77776555544444333333 33455778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
|++++++.+|.........+. ...|.|+|+||+|+||.++ .++|+|+||+|+|||++|+|||||+||||++++|.+||
T Consensus 440 rvFel~dr~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 440 RVFELMDRKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred HHHHHhccCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 999999988765443221222 5678999999999999763 57999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+|+++++..+||++||+|.|||.||++||+|||.||.+ +.++|++++|++.++.++||..+|+||||
T Consensus 519 ~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T 596 (716)
T KOG0058|consen 519 DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNT 596 (716)
T ss_pred CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999999999999986 67999999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+|||||||||||||||++||.||||||+|||||.++|..|+++|.+..++||||.
T Consensus 597 ~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlv 658 (716)
T KOG0058|consen 597 VVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLV 658 (716)
T ss_pred ccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999973
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.6e-82 Score=657.68 Aligned_cols=377 Identities=37% Similarity=0.531 Sum_probs=352.9
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.|++++++.+|+++++..++.+.+++..++..+..++.++.+.|.+.|++|+|+.+.|..+..+|++...++
T Consensus 286 ~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~ 365 (709)
T COG2274 286 AVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQ 365 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.....+..+.......+..++ .+..++++|+|+++|.+|++|+|++++|.++..++..|+.++...|.++++...+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~r 445 (709)
T COG2274 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALER 445 (709)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877766655555543 4568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.++|...+......+...++|+++||+|+|+.+++++|+|+||+|++||++||||+||||||||+|+|+|+|+|
T Consensus 446 L~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 446 LGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred HHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999988875443322344556789999999999998777899999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+.++++.++|++|+||+||+++|+|||+|||++++| +.++|++.+||+.+++++||.++|+||||+|
T Consensus 526 ~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 526 QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred CCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999987 4679999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+|||||+++|+||||||||||||+++|+.|.++|.+..++||+|.
T Consensus 604 ~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~ 663 (709)
T COG2274 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVII 663 (709)
T ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999999999999999999999984
No 3
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.6e-77 Score=618.00 Aligned_cols=375 Identities=28% Similarity=0.346 Sum_probs=327.3
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGER-LRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (382)
++|+++||.+++++++.+|++.++..++.++ .++..++.++..+++.+.+.|.++|+++||+|+.++.+.++|++..++
T Consensus 146 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~ 225 (529)
T TIGR02868 146 AAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRE 225 (529)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHH
Confidence 4578899999999988888877766555444 456667778888999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
..+...+..+.......+..+. .+..++++++|++++.+|.+|+|.+++++.+...+..|+..+...+..++.+..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (529)
T TIGR02868 226 LLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAE 305 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666665555444333322 344566678899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCC--CCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 161 RLFDLTKFKSKVIEKPD--AVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
|+.++++.+++...... .....+..+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 306 ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 306 RIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred HHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999976654221111 11111224579999999999864 3699999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 239 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
|+|++|+|.+||+|++++ .+++|++|+||||||++|++||+|||++|++ +.++++++++++.+++++++.++|+|||
T Consensus 385 ~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~--~~~~e~i~~al~~a~l~~~i~~lp~Gld 461 (529)
T TIGR02868 385 LDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP--DATDEELWAALERVGLADWLRSLPDGLD 461 (529)
T ss_pred CCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC--CCCHHHHHHHHHHcCCHHHHHhCccccc
Confidence 999999999999999999 9999999999999999999999999999975 4689999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||+|.+||||||||||||||++++|+|+|||||||+||+++|+.|++.+++..+++|+|.
T Consensus 462 T~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIi 524 (529)
T TIGR02868 462 TVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVV 524 (529)
T ss_pred chhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999989999984
No 4
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-77 Score=637.22 Aligned_cols=375 Identities=34% Similarity=0.485 Sum_probs=343.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
.-|+++|.|+++++++.|++++......+.+.....+..+..++......|++++++||+++++|.++.+.|.+..+...
T Consensus 802 iaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~ 881 (1228)
T KOG0055|consen 802 IAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPR 881 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 162 (382)
+...+...+..+...+.+ +++....+++++|++++.+|.++...++-.+..+.+-...+.......+++.++..++.++
T Consensus 882 ~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~i 961 (1228)
T KOG0055|consen 882 KSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSI 961 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 888888777777666554 4456678899999999999999999988888777777777888888999999999999999
Q ss_pred HHhhcCcccccCCC-CCCCCCCCCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 163 FDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 163 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++.+++.+... .+...+...|+|+++||+|+||.+. .++|+|+||+|++|+++||||||||||||++.+|.|+|+
T Consensus 962 F~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055|consen 962 FEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred HHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99999887544332 2323445678999999999999753 479999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|.|.+||.|+++++++++|+++|.|+|||.||++||||||+||.. +++++|+.+|++.+++|+||.+||+||||.
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~--~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE--EVSEEEIIEAAKLANAHNFISSLPQGYDTR 1119 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC--CCCHHHHHHHHHHhhhHHHHhcCcCcccCc
Confidence 999999999999999999999999999999999999999999999943 379999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
+||+|.+||||||||||||||++|||+||+|||+|||||.++|+.|+++|++.+.+||+|
T Consensus 1120 vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1120 VGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred cCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 999999999999999999999999999999999999999999999999999999999987
No 5
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3e-75 Score=608.23 Aligned_cols=373 Identities=24% Similarity=0.329 Sum_probs=316.7
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++.
T Consensus 156 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 235 (588)
T PRK11174 156 IAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDF 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHH
Confidence 45789999999999999999998888899999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSL---------VSFITSLVFMIEPIQGVGKAYNEF 152 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l---------~~~~~~~~~~~~~~~~l~~~~~~~ 152 (382)
.+...+..+.......+.... .+..+++++++++.+ .|.+|+|.+ ++++++...+..|+..++..+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~ 314 (588)
T PRK11174 236 RQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAK 314 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 666655544433333333222 222223333444443 367777654 233355667789999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccccCCCCCCCCC-CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHH
Q 016798 153 KQGEPAIERLFDLTKFKSKVIEKPDAVSLD-HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL 231 (382)
Q Consensus 153 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl 231 (382)
+++..+.+|+.++++.+++...... ...+ ...++|+++||+|.|+++ +++|+|+||+|++||++|||||||||||||
T Consensus 315 ~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL 392 (588)
T PRK11174 315 AQAVGAAESLVTFLETPLAHPQQGE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSL 392 (588)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 9999999999999976543211111 1111 123479999999877654 569999999999999999999999999999
Q ss_pred HHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHH
Q 016798 232 AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311 (382)
Q Consensus 232 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 311 (382)
+++|+|+| |++|+|.+||+|+++++.+++|++|+||||||++|++||+|||+++++ ++++++++++++.++++++++
T Consensus 393 ~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~ 469 (588)
T PRK11174 393 LNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLP 469 (588)
T ss_pred HHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHH
Confidence 99999999 999999999999999999999999999999999999999999999975 478999999999999999999
Q ss_pred hCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 312 ~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++|+||||.+||+|.+|||||||||+||||+++||+|||||||||+||.++|+.|.++|+++.+++|+|.
T Consensus 470 ~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIi 539 (588)
T PRK11174 470 LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLM 539 (588)
T ss_pred hcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999989999874
No 6
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.7e-75 Score=617.90 Aligned_cols=377 Identities=33% Similarity=0.472 Sum_probs=339.9
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++|++...+.
T Consensus 278 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 357 (694)
T TIGR03375 278 LVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAAL 357 (694)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+.......+...+ .+..++++++|++++.+|.+|+|.++++.++..++..|+..+...+..++.+..+.+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~r 437 (694)
T TIGR03375 358 ARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQS 437 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555444444332 3456677888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..........+...+.|+++||+|+|++.++++|+|+||+|++||++||||+||||||||+++|+|+|+|
T Consensus 438 i~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 438 LDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred HHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999876543221111111223467999999999986556799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+++++.+++|++|+||||||++|++||+|||+++++ +.++++++++++.++++++++.+|+||||.+
T Consensus 518 ~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i 595 (694)
T TIGR03375 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQI 595 (694)
T ss_pred CCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCccccccee
Confidence 99999999999999999999999999999999999999999999976 4689999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+||||++++|+++|||||||+||+++|+.|.+.|+++.+++|+|.
T Consensus 596 ~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~ii 655 (694)
T TIGR03375 596 GERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVL 655 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988999874
No 7
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.1e-75 Score=615.55 Aligned_cols=372 Identities=28% Similarity=0.403 Sum_probs=334.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||+++.|..+.++|.+...+.
T Consensus 268 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 347 (686)
T TIGR03797 268 GLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQ 347 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHH
Confidence 46789999999999999999988888899999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+...+...+ .+..++++++|++++.+|.+|+|.++++.++..++..|+..+...+..++.+..+++|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 427 (686)
T TIGR03797 348 RKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWER 427 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555544444333 3456778889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..... .......+.|+++||+|+|+++++++|+|+||+|++||++||||+||||||||+|+|+|+|+|
T Consensus 428 i~~~l~~~~e~~~~~--~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 428 AKPILEALPEVDEAK--TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred HHHHhcCCcccccCc--CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 999988665432111 111223467999999999976556799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+|+++++.+++|++|+||||||++|+|||+|||+++++ .++++++++++.++++++++++|+||||++
T Consensus 506 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~i 582 (686)
T TIGR03797 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVI 582 (686)
T ss_pred CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999875 579999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+||||++++|+|||||||||+||+++|+++.+.|+++ ++|+|+
T Consensus 583 ge~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~Ii 640 (686)
T TIGR03797 583 SEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIV 640 (686)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEE
Confidence 9999999999999999999999999999999999999999999999999987 578764
No 8
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.9e-74 Score=599.65 Aligned_cols=374 Identities=42% Similarity=0.641 Sum_probs=335.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+.++.++|.++++.++..|++.++..++.++.++...+.++..+++++.+.|.++|++++|+|+.++.+.+++.+..++.
T Consensus 145 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~ 224 (567)
T COG1132 145 VLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEEL 224 (567)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999888999999999999999999999999999999999999989998887776
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+............. +..+...+++++|.+++..+.+++|.+++++.+...+..|+..+...+..++.+..+.+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~r 304 (567)
T COG1132 225 RRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAER 304 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555554444433322 334556777888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..+.... .....++|+++||+|+|+++ +++|+|+||+|++||++||||||||||||++++|+|+|+|
T Consensus 305 i~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 305 LFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred HHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 99999876543222211 22345679999999999853 4799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+|+++++.+++|++|++|||||+||++||+|||++|+++ +++|+++++++.++++|++.++|+||||.+
T Consensus 382 ~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~v 459 (567)
T COG1132 382 TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIV 459 (567)
T ss_pred CCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCccccccee
Confidence 999999999999999999999999999999999999999999999874 789999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+||||||||||||||+++||||||||||||+||++||+.|+++++++.++||+|.
T Consensus 460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999999999999999888888874
No 9
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.8e-74 Score=614.01 Aligned_cols=376 Identities=27% Similarity=0.410 Sum_probs=334.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||++|.|+.+.++|.+...+.
T Consensus 288 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 367 (708)
T TIGR01193 288 LFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDY 367 (708)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+.......+..++ .+..++++++|++++.+|.+|+|.++++.++...+..|+..+...+..++.+..+.+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 447 (708)
T TIGR01193 368 LNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNR 447 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666655444433333322 3446777889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..........+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|
T Consensus 448 i~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 448 LNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred HHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 999998765532221111122335689999999999753 5799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+|+++++.+++|++|+||||||++|++||+|||.++.. ++.++++++++++.+++++++.++|+||||.+
T Consensus 527 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i 605 (708)
T TIGR01193 527 RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605 (708)
T ss_pred CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEe
Confidence 99999999999999999999999999999999999999999999842 24689999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++. +++|+|.
T Consensus 606 ~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~Ii 664 (708)
T TIGR01193 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIF 664 (708)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEE
Confidence 9999999999999999999999999999999999999999999999999986 6788874
No 10
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.2e-74 Score=613.61 Aligned_cols=375 Identities=30% Similarity=0.417 Sum_probs=335.2
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++..+..++..+..++..+.+.|.++|+++||+++.|+.+.++|.+...+.
T Consensus 286 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~ 365 (710)
T TIGR03796 286 LLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKL 365 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+...+...+ .+..++++++|++++.+|.+|+|.++++.++...+..|+..+...+..++.+..+++|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~r 445 (710)
T TIGR03796 366 LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNR 445 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666655554444443332 3456778889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCC----C-CCCC-CCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHH
Q 016798 162 LFDLTKFKSKVIEKP----D-AVSL-DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235 (382)
Q Consensus 162 i~~~~~~~~~~~~~~----~-~~~~-~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll 235 (382)
+.++++.+++..... . .... +...+.|+++||+|+|++.++++|+|+||+|++||++|||||||||||||+++|
T Consensus 446 i~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL 525 (710)
T TIGR03796 446 LDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLV 525 (710)
T ss_pred HHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999998765532211 0 0111 223468999999999987656799999999999999999999999999999999
Q ss_pred hhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCC
Q 016798 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ 315 (382)
Q Consensus 236 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~ 315 (382)
+|+|+|++|+|.+||.|+++++.+++|++|+||||||++|++||+|||+++++ +.++++++++++.+++++++.++|+
T Consensus 526 ~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~ 603 (710)
T TIGR03796 526 AGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPG 603 (710)
T ss_pred hcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC--CCCHHHHHHHHHHhCCHHHHHhCcC
Confidence 99999999999999999999999999999999999999999999999999865 4689999999999999999999999
Q ss_pred CcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 316 Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||.+||+|.+|||||||||+||||++++|+|+|||||||+||.++|+++.+.|++ .++|+|.
T Consensus 604 gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~Ii 667 (710)
T TIGR03796 604 GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCII 667 (710)
T ss_pred cccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999987 4788874
No 11
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7.8e-74 Score=596.96 Aligned_cols=376 Identities=34% Similarity=0.516 Sum_probs=335.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+++++..++.+++++..++.++..++..+.+.|.++|++++|++|.++.+.++|++..++.
T Consensus 158 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~ 237 (582)
T PRK11176 158 IMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRM 237 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 45788999999999999999888888999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+............ .+..++++++|++++..|.+|+|+++++..+...+..|+..+...+..++.+..+.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 317 (582)
T PRK11176 238 RQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665554444444332 3445666778899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..... ...++..+.|+++||+|+|+++++++|+|+||+|++||++||||+||||||||+++|+|+|+|
T Consensus 318 i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 318 LFAILDLEQEKDEGK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred HHHHhcCCCcCCCCC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 999987654422111 111223457999999999987656799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+|+++++.+++|++|+||||||++|++||+|||+++++. ..++++++++++.++++++++++|+||||.+
T Consensus 396 ~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-~~~~~~i~~al~~~~l~~~i~~lp~Gldt~i 474 (582)
T PRK11176 396 DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE-QYSREQIEEAARMAYAMDFINKMDNGLDTVI 474 (582)
T ss_pred CCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC-CCCHHHHHHHHHHhCcHHHHHhcccccCcee
Confidence 999999999999999999999999999999999999999999998652 4689999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 475 g~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~ 534 (582)
T PRK11176 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534 (582)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
No 12
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.8e-73 Score=603.90 Aligned_cols=374 Identities=34% Similarity=0.483 Sum_probs=330.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++.
T Consensus 294 ~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~ 373 (711)
T TIGR00958 294 GFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEET 373 (711)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+............... .+..++++++|++++..|.+|+|.+++++.+...+..|+..+...+.+++++..+.+|
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~r 453 (711)
T TIGR00958 374 LQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEK 453 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555544433333332222 3345667778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+.++++.+++...... ....+..+.|+++||+|+||+. ++++|+|+||+|++||++|||||||||||||+++|+|+|+
T Consensus 454 i~~~l~~~~~~~~~~~-~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 454 VFEYLDRKPNIPLTGT-LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred HHHHhCCCCCCCCCCC-CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 9999987654322111 1112234679999999999864 3579999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|+|.+||+|+++++.+++|++|+||+|||++|++||+|||.++.+ +.++++++++++.++++++++++|+||||.
T Consensus 533 p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~--~~~~e~i~~al~~a~l~~~i~~lp~GldT~ 610 (711)
T TIGR00958 533 PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT--DTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610 (711)
T ss_pred CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCCCccCCc
Confidence 999999999999999999999999999999999999999999999875 467999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||+|.+||||||||||||||++++|+|+|||||||+||+++|+.+.+ ....+++|+|.
T Consensus 611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIi 669 (711)
T TIGR00958 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLL 669 (711)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEE
Confidence 999999999999999999999999999999999999999999999999 33457888874
No 13
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4e-73 Score=585.33 Aligned_cols=375 Identities=27% Similarity=0.395 Sum_probs=327.6
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.++++.++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++.
T Consensus 137 ~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 216 (529)
T TIGR02857 137 AAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEY 216 (529)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHH
Confidence 45778999999999988898888888888888888889999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+..........++ .+..+++++++++.+..|.+|+|.++++.++...+..|+..+...+..++.+..+.+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 296 (529)
T TIGR02857 217 RERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEA 296 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555444333333322 2333444456666777999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..... ..+ ....+.|+++||+|+|+++++++|+|+||+|++||++|||||||||||||+++|+|+|+|
T Consensus 297 i~~ll~~~~~~~~~~-~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 297 LFAVLDAPRPLAGKA-PVT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred HHHHhCCCcccCCCc-CCC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 999987543221111 111 112357999999999987655799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+++++.+++|++++||+|+|++|++||+||++++.+ +.++++++++++.++++++++++|+||||.+
T Consensus 375 ~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v 452 (529)
T TIGR02857 375 TEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP--DASDAEIRRALERAGLDEFVAALPQGLDTLI 452 (529)
T ss_pred CCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999999999999875 4578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|.
T Consensus 453 ~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~ 512 (529)
T TIGR02857 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLL 512 (529)
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
No 14
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-73 Score=564.36 Aligned_cols=375 Identities=28% Similarity=0.401 Sum_probs=327.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+.++++||.-++|.++++|++.+.+..++++.++.+++++....++++.+.|.++|+.|+|.|+..+...++..+..+++
T Consensus 133 i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~f 212 (559)
T COG4988 133 IAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDF 212 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGAL-FILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
.+..++.-++.-+...+..+ .++... +.+.+|..++..|.++......++.+..-++.|++.++..|+.-+.+..+.+
T Consensus 213 R~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d 292 (559)
T COG4988 213 RKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAAD 292 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 66666655554333333332 233322 2333444444338999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCC-CCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 161 RLFDLTKFKSKVIEKPDA-VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..+++.+.+....... ......+.++..+|++|+|++++ ++++|+||++++|+.+||||+||||||||+++|+|++
T Consensus 293 ~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 293 KLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred HHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 999999876553222211 11112233566669999999875 7999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+++++++.+.||++++||+|+|+||++|+||||+++++ +.+++++.++++.+++.++++. |+|+||
T Consensus 372 ~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~-p~GLdt 448 (559)
T COG4988 372 APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP--DASDEEIIAALDQAGLLEFVPK-PDGLDT 448 (559)
T ss_pred CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcC-CCcccc
Confidence 9999999999999999999999999999999999999999999999987 4689999999999999999999 999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+|||||+||+++||||++++++++||||||+||.+||+.|++.|.++.+++|+|+
T Consensus 449 ~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~ 510 (559)
T COG4988 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLV 510 (559)
T ss_pred hhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 15
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.1e-72 Score=587.04 Aligned_cols=376 Identities=37% Similarity=0.558 Sum_probs=337.6
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.++++++++.|+++++..++.++.++...+..+..++..+.+.|.++|+++||.++.++.+.++|++..++.
T Consensus 147 ~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 226 (571)
T TIGR02203 147 IVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRN 226 (571)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+.......+..+ ..+..++++++|++++.+|.+|+|.++++..+..++..|+..+...+..++++..+.+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 306 (571)
T TIGR02203 227 RRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAES 306 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666665555544444333 23456677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..... .+.....++|+++||+|+|++.++++|+|+||+|++||+++|+|+||||||||+++|+|+|+|
T Consensus 307 i~~~l~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 307 LFTLLDSPPEKDTGT--RAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred HHHHHcCCCCCCCCC--CCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 999987655432111 111223457999999999986556799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+++++++.+++|++++||||+|++|++|++|||.++++ .+.++++++++++.+++++++.++|+|+||.+
T Consensus 385 ~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i 463 (571)
T TIGR02203 385 DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT-EQADRAEIERALAAAYAQDFVDKLPLGLDTPI 463 (571)
T ss_pred CCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC-CCCCHHHHHHHHHHcChHHHHHhCcCccccee
Confidence 99999999999999999999999999999999999999999999864 14689999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+||||++++|+|+|||||||+||.++++.+.+.|++..+++|+|.
T Consensus 464 ~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIi 523 (571)
T TIGR02203 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLV 523 (571)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988999874
No 16
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3e-72 Score=595.57 Aligned_cols=376 Identities=36% Similarity=0.523 Sum_probs=338.6
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++...+.
T Consensus 271 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 350 (694)
T TIGR01846 271 AVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAY 350 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...........+ .+..++++++|++++..|.+|+|.++++.++...+..|+..++..+..++.+..+++|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 430 (694)
T TIGR01846 351 VAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALER 430 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766665555444444332 3456777889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++.... .....+...+.|+++||+|+|+++++++|+|+||+|++||++||||+||||||||+++|+|+|+|
T Consensus 431 i~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p 509 (694)
T TIGR01846 431 LGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP 509 (694)
T ss_pred HHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999876543221 11112233568999999999986556799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+++++.+++|++|+||+|+|++|++|++|||.++++ +.++++++++++.++++++++++|+||||.+
T Consensus 510 ~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i 587 (694)
T TIGR01846 510 QHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587 (694)
T ss_pred CCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEe
Confidence 99999999999999999999999999999999999999999999875 4689999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 588 ~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 647 (694)
T TIGR01846 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVII 647 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
No 17
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.2e-72 Score=582.24 Aligned_cols=374 Identities=25% Similarity=0.331 Sum_probs=325.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALV-IAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (382)
++|+++||.+++++++++|+++++ ..++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|++..++
T Consensus 153 ~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~ 232 (574)
T PRK11160 153 IGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQ 232 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHH
Confidence 567899999999988888876654 4666778888888899999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 016798 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVF-MIEPIQGVGKAYNEFKQGEPAI 159 (382)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 159 (382)
..+...+..+.......+..+. .+..++++++|++++ +|.+++|.+++++.+... ...|+..+...+..++++..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~ 311 (574)
T PRK11160 233 WLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASA 311 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777666555444433322 334556677888874 788999999998877644 4568888999999999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 160 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|+.++++.+++....... ......+.|+++||+|+|+++++++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 312 ~ri~~ll~~~~~~~~~~~~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 312 RRINEITEQKPEVTFPTTS-TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred HHHHHHHhCCCCCCCCccc-CCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 9999999876543211111 111234679999999999865457999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+++++++.+++|++|+||||||++|++||+|||+++++ +.++++++++++.+++++++++ |+||||
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~al~~~~l~~~i~~-p~GldT 467 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP--NASDEALIEVLQQVGLEKLLED-DKGLNA 467 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC--ccCHHHHHHHHHHcCCHHHHcC-ccccCc
Confidence 9999999999999999999999999999999999999999999999875 4689999999999999999999 999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+||||||||++||||++++|+++|||||||+||+++|+.+.+.|+++.+++|+|.
T Consensus 468 ~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tvii 529 (574)
T PRK11160 468 WLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLM 529 (574)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999988999874
No 18
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-73 Score=604.65 Aligned_cols=376 Identities=35% Similarity=0.510 Sum_probs=338.9
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
.-|++.|.|+++++.+.|++.+....+.+.+.+.+.+.++..++..+.+.|.+.+++||.+|+.|+.+.++|.+..+...
T Consensus 165 i~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~ 244 (1228)
T KOG0055|consen 165 IGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENAL 244 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 162 (382)
+...+...+..+...+.. +.+......+|+|..++..+..++|.+++.+..+..-...+.+....+..+..+..++.++
T Consensus 245 k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I 324 (1228)
T KOG0055|consen 245 KFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRI 324 (1228)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHH
Confidence 777777666665555443 3445567889999999999999999888777666655667778888889999999999999
Q ss_pred HHhhcCcccccCCC-CCCCCCCCCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 163 FDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 163 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++..++..... .........++|+|+||+|+||.++ .++|+|+||+|++|+++||||||||||||++++|.|+|+
T Consensus 325 ~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 325 FETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred HHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99998766543322 2223344678999999999999874 479999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|+|.+||.|+++++.+++|++||+|+|+|.||++||+|||.||++ +++++++.++++.++.++|+..||+||||.
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTL 482 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhccc
Confidence 999999999999999999999999999999999999999999999987 578999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||+|.+|||||||||||||||++||+||+||||||+||+++|+.|+++|++.+++||+|.
T Consensus 483 vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTiv 543 (1228)
T KOG0055|consen 483 VGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIV 543 (1228)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 19
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.8e-71 Score=579.70 Aligned_cols=376 Identities=31% Similarity=0.468 Sum_probs=332.2
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||.|+.++.+.++|.+..++.
T Consensus 149 ~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~ 228 (588)
T PRK13657 149 PLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNL 228 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHH
Confidence 34578999999999999999888888889999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+......+ ..+..++++++|++++.+|.+|+|.+++++.++..+..|+..+...+..+..+..+.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~ 308 (588)
T PRK13657 229 LAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEE 308 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555544444333332 23446677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..........+...+.|+++||+|+|+++ +++|+|+||++++||+++|||+||||||||+++|+|+|+|
T Consensus 309 i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 309 FFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred HHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 999887644322111111112233579999999999854 4699999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.++.+++.+++|++|+||||+|++|++|++|||+++++ +.++++++++++.+++++++.++|+|+||.+
T Consensus 388 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~--~~~d~~i~~al~~~~l~~~i~~lp~gldt~i 465 (588)
T PRK13657 388 QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVV 465 (588)
T ss_pred CCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC--CCCHHHHHHHHHHhCHHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999999999999875 4679999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 466 ~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIi 525 (588)
T PRK13657 466 GERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFI 525 (588)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
No 20
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.9e-72 Score=624.71 Aligned_cols=374 Identities=26% Similarity=0.374 Sum_probs=312.5
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHhccHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKIS-KQ-----------------SHLSIASLSAYLNEVLPAILFVKA 64 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~ 64 (382)
+++++++|.++++++++ ++++.+.+.++.+... .+ ..+..++.+..+.|.++|+++||+
T Consensus 961 ~~~~~~~~~l~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka 1037 (1466)
T PTZ00265 961 VMSFYFCPIVAAVLTGT---YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVII 1037 (1466)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHH
Confidence 45788999888776543 3334444444333211 11 123456788999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Q 016798 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQ 143 (382)
Q Consensus 65 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~ 143 (382)
|+.|+.+.++|.+..+...+...+.....++...+... ..+..++++++|++++..|.+++|.+++++.++.....++.
T Consensus 1038 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~ 1117 (1466)
T PTZ00265 1038 YGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAG 1117 (1466)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877766666555555544444433 34456788899999999999999999998877666666788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccccCC-CCCCC---CCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEE
Q 016798 144 GVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK-PDAVS---LDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETV 218 (382)
Q Consensus 144 ~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-~~~~~---~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~ 218 (382)
.+...+..++.+..+.+|++++++.+++.... ..... .+...+.|+|+||+|+||++ +.++|+|+||+|++|+++
T Consensus 1118 ~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~v 1197 (1466)
T PTZ00265 1118 KLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTT 1197 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEE
Confidence 89999999999999999999999865432111 11111 11234689999999999854 347999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhhCCCC------------------------------------------------------CCc
Q 016798 219 ALIGPSGGGKSTLAKLLLRLYDP------------------------------------------------------LSG 244 (382)
Q Consensus 219 aivG~sGsGKSTl~~ll~g~~~~------------------------------------------------------~~G 244 (382)
|||||||||||||+++|+|+|+| ++|
T Consensus 1198 AIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 1277 (1466)
T PTZ00265 1198 AIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSG 1277 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence 99999999999999999999998 699
Q ss_pred eEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCC
Q 016798 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (382)
Q Consensus 245 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~ 324 (382)
+|.+||+|+++++.+++|++|+||+|||+||++||+|||++|++ +++++++++|++.+++++||.+||+||||.|||+
T Consensus 1278 ~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~--~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~ 1355 (1466)
T PTZ00265 1278 KILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPY 1355 (1466)
T ss_pred eEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCC
Confidence 99999999999999999999999999999999999999999976 4789999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
|.+|||||||||||||||+++|+|||||||||+||+++|+.|+++|+++. +++|+|.
T Consensus 1356 G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIi 1414 (1466)
T PTZ00265 1356 GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEE
Confidence 99999999999999999999999999999999999999999999999984 6899874
No 21
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.1e-71 Score=578.40 Aligned_cols=371 Identities=27% Similarity=0.383 Sum_probs=319.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||.|+.++.+.++|.+..++.
T Consensus 158 ~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 237 (592)
T PRK10790 158 VAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSH 237 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45778999999998888888888877888888888888888899999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALI-PQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
.+...+..+..... ..+..+. .+..+++++++++ +..|.+++|.+++++.+...+..|+..++..+..++++..+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ 316 (592)
T PRK10790 238 YMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGE 316 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555544433322 1112111 1222222223333 5789999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
|+.++++.+++..... ..+...++|+++||+|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+|+
T Consensus 317 ri~~~l~~~~~~~~~~---~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 317 RVFELMDGPRQQYGND---DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred HHHHHhcCCCccCCCC---ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 9999987654321111 112234579999999999853 569999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|+|.+||.|+++++.+++|++|+||||||++|++||+|||++++ +.++++++++++.++++++++++|+||||.
T Consensus 393 p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~---~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~ 469 (592)
T PRK10790 393 LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR---DISEEQVWQALETVQLAELARSLPDGLYTP 469 (592)
T ss_pred CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC---CCCHHHHHHHHHHcCcHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999986 368999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.|.+.|+++.+++|+|.
T Consensus 470 i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIi 530 (592)
T PRK10790 470 LGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVV 530 (592)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999988899874
No 22
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-70 Score=568.39 Aligned_cols=374 Identities=26% Similarity=0.382 Sum_probs=330.3
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||.++.+.++|++..++.
T Consensus 134 ~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 213 (544)
T TIGR01842 134 LVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKY 213 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHH
Confidence 45789999999998888888888777778888888888999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+........... ..+..++++++|++++.+|.+|+|.++++.++...+..|+..+...+..++.+..+.+|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 293 (544)
T TIGR01842 214 LSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKR 293 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555544443333332 23445667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++.... ...+...+.|+++||+|+|+++++++|+|+||++++||+++||||||||||||+++|+|+|+|
T Consensus 294 i~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 370 (544)
T TIGR01842 294 LNELLANYPSRDPA---MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370 (544)
T ss_pred HHHHHhCCccccCC---CCCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 99998765442211 111223457999999999986555799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.++.+++.+++|++++||||+|++|++|++||+.++++ +.++++++++++.++++++++++|+|+||.+
T Consensus 371 ~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~ 448 (544)
T TIGR01842 371 TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVI 448 (544)
T ss_pred CCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999999999997764 4679999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++. +++|+|+
T Consensus 449 ~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ 509 (544)
T TIGR01842 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVV 509 (544)
T ss_pred CCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999986 5788874
No 23
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.7e-70 Score=568.39 Aligned_cols=372 Identities=32% Similarity=0.449 Sum_probs=331.6
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHH
Q 016798 6 LVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCE 85 (382)
Q Consensus 6 ~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 85 (382)
++++|.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|+.++.+.++|.+..++..+.
T Consensus 133 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~ 212 (569)
T PRK10789 133 TQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKK 212 (569)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999988999999999999999999999999999999999999999999999999988777666
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 86 LLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFD 164 (382)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~ 164 (382)
..+..+........... ..+..++++++|++++.+|.+|+|.++++..+...+..|+..++..+..++.+..+.+|+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ 292 (569)
T PRK10789 213 NMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRA 292 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655554444333332 23445667788999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc
Q 016798 165 LTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (382)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G 244 (382)
+++.+++..... ...+...+.|+++|++|+|+++++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|
T Consensus 293 ll~~~~~~~~~~--~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 293 MLAEAPVVKDGS--EPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred HHcCCCcccCCC--CCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 987654322111 111223457999999999986555799999999999999999999999999999999999999999
Q ss_pred eEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCC
Q 016798 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (382)
Q Consensus 245 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~ 324 (382)
+|.+||.++.+++..++|++++||+|+|++|++|++|||+++++ +.++++++++++.+++++++.++|+|+||.+|++
T Consensus 371 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 448 (569)
T PRK10789 371 DIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGER 448 (569)
T ss_pred EEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCC
Confidence 99999999999999999999999999999999999999999865 4689999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~ 505 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVII 505 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999988899874
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.7e-70 Score=568.63 Aligned_cols=377 Identities=38% Similarity=0.571 Sum_probs=330.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||.++.++.+..+|++..++.
T Consensus 151 ~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~ 230 (576)
T TIGR02204 151 IMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKA 230 (576)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHH
Confidence 35678999999999988898888888899999999999999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+.......+... ..+..++++++|++++.+|.+|+|.++++..+..++..|+..+...+..+..+..+.+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~r 310 (576)
T TIGR02204 231 YEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAER 310 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554443333333322 23345566778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCC-CCCCCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 162 LFDLTKFKSKVIEKPDAVS-LDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++++.+++......... ..+..+.|+++||+|+|++++ +++|+|+||+|+|||+++|+|+||||||||+++|+|+|
T Consensus 311 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 311 LIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred HHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 9999876543211111111 111235799999999998643 57999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||.++++++..++|++++|+||+|++|++||+|||.++++ +.++++++++++.+++.++++++|+|+||
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~--~~~~~~~~~~l~~~~l~~~i~~l~~gl~t 468 (576)
T TIGR02204 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDT 468 (576)
T ss_pred CCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC--CCCHHHHHHHHHHcCcHHHHHhCCCCCCc
Confidence 9999999999999999999999999999999999999999999999875 35789999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+||||||||++||||++++|+++|||||||+||.++++.+.+.|+++.+++|+|.
T Consensus 469 ~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Ii 530 (576)
T TIGR02204 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLI 530 (576)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999988899874
No 25
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-72 Score=543.21 Aligned_cols=375 Identities=31% Similarity=0.453 Sum_probs=326.4
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
+...+||+.+++.++++.++..+...+...-.+..+++.....+......|++-+.+|||-||+|+++.++|++...++.
T Consensus 353 F~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yq 432 (790)
T KOG0056|consen 353 FFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQ 432 (790)
T ss_pred hhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHH
Confidence 34458999999999888887766555444444555666666666677788999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 162 (382)
+...+....-.+++.... ++.++.++.-.+.+|++..+.+++|.++-|.+|+..+..|+..++..+..++++...++++
T Consensus 433 k~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnm 512 (790)
T KOG0056|consen 433 KQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENM 512 (790)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHH
Confidence 655554333333333322 2233333333456677788999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 163 FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
+|+++.++|..+.+...+.....|.|+|+||+|.|.++ +++|+||||+++||+++|+|||||+||||++++|.++|+.+
T Consensus 513 fdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 513 FDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred HHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc
Confidence 99999888876666666666667899999999999875 57999999999999999999999999999999999999999
Q ss_pred CceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccC
Q 016798 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (382)
Q Consensus 243 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vg 322 (382)
+|.|.+||+|+++....++|++||+||||..||++||..||.|+++ ++++||+.+|++++++||-|.++|+||+|.||
T Consensus 592 sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 592 SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred CceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 9999999999999999999999999999999999999999999997 56899999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+|-.||||||||+|+||+++++|.|++|||+||+||..||+.|+.+|.++..+||.|.
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIV 728 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIV 728 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEE
Confidence 99999999999999999999999999999999999999999999999999999998873
No 26
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.2e-69 Score=564.82 Aligned_cols=376 Identities=29% Similarity=0.433 Sum_probs=331.4
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||.++.+.+++++..++.
T Consensus 149 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~ 228 (585)
T TIGR01192 149 PTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNL 228 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+...+... ..+..++++++|++++.+|.+++|.++++..+...+..|+..+...+..+..+..+.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~r 308 (585)
T TIGR01192 229 LSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLED 308 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554444443333322 23445677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..........+...+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|
T Consensus 309 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 309 FFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred HHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC
Confidence 999987654322111111112234579999999999854 3689999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.++.+++.+++|++++||+|+|++|++|++||+.++.+ +.++++++++++.+++++++.++|+|+||.+
T Consensus 388 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~ 465 (585)
T TIGR01192 388 TVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLV 465 (585)
T ss_pred CCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchh
Confidence 99999999999999999999999999999999999999999999865 3578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++|||||+++|+++|||||||+||.++++.+.+.|+++.+++|+|.
T Consensus 466 ~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~ 525 (585)
T TIGR01192 466 GERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFI 525 (585)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988999874
No 27
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-70 Score=537.21 Aligned_cols=366 Identities=30% Similarity=0.462 Sum_probs=308.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q 016798 10 PVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKK 89 (382)
Q Consensus 10 ~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 89 (382)
+..+++++..+..+..........-.+.+.++..+.+.....+.|.+.+.++||.||.|+++.++|.+...++.+...+.
T Consensus 175 a~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~ 254 (591)
T KOG0057|consen 175 AAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKY 254 (591)
T ss_pred hHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhH
Confidence 33344444333333333223333334556778888899999999999999999999999999999999988888777766
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016798 90 RKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKF 168 (382)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~ 168 (382)
....++......+++ .....++..|..-+.++.+|+|.++....+..++..|+..++..+..+.++...+..++.+.+.
T Consensus 255 ~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~ 334 (591)
T KOG0057|consen 255 SSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEV 334 (591)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Confidence 655555444433333 2344455556666778999999999999999999999999999999999999888877765443
Q ss_pred cccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE
Q 016798 169 KSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (382)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~ 248 (382)
.....+. ..+...+.+.|+|+||+|.|+++ +++|+++||+|++||++||||+|||||||++++|+||++ ++|+|++
T Consensus 335 ~~~i~~~--~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~I 410 (591)
T KOG0057|consen 335 DEDIQEA--ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILI 410 (591)
T ss_pred hhhhhhc--cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEE
Confidence 2221111 12333456789999999999864 469999999999999999999999999999999999999 9999999
Q ss_pred cCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCC
Q 016798 249 DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (382)
Q Consensus 249 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~l 328 (382)
||+|+++++++++|+.|||||||..||++||.+||.||++ .+++|++.++|+.+++||.+.++|+||+|.+||+|..|
T Consensus 411 dG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~--sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~L 488 (591)
T KOG0057|consen 411 DGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP--SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML 488 (591)
T ss_pred CCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC--CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccc
Confidence 9999999999999999999999999999999999999997 57899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 329 SgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||||||++||||+++||||+++|||||+||.+||+.+.+.+.+...+||+|+
T Consensus 489 SGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~ 541 (591)
T KOG0057|consen 489 SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIM 541 (591)
T ss_pred ccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999985
No 28
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-67 Score=596.59 Aligned_cols=373 Identities=22% Similarity=0.320 Sum_probs=312.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
++++.+|.+++++++++++++++.+++.+..++..+...+..+.+.+.+.|+++|+++||+|+.++.+.+++.+..+...
T Consensus 1099 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1178 (1522)
T TIGR00957 1099 VILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQ 1178 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45667787776666666666666667777777777777888899999999999999999999999988888877766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVS-GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 162 (382)
+..........+......+ +..+++++++++.+. .+.++.|.+.+++.|...+..|+..+...+..++.+..+++|+
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi 1256 (1522)
T TIGR00957 1179 KAYYPSIVANRWLAVRLEC--VGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERL 1256 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332222232222222 122333444555554 5789999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCC-CCCCCCC--CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 163 FDLTKFKSKVIEK-PDAVSLD--HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~~--~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++.++|.... ....+.+ +..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+|
T Consensus 1257 ~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~ 1336 (1522)
T TIGR00957 1257 KEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN 1336 (1522)
T ss_pred HHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 9999776553211 1111111 245789999999999876567999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+|+++++.+++|++|++|||||++|+|||||||.... +.++++++++++.+++++++.++|+||||
T Consensus 1337 ~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt 1413 (1522)
T TIGR00957 1337 ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS---QYSDEEVWWALELAHLKTFVSALPDKLDH 1413 (1522)
T ss_pred cCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc---CCCHHHHHHHHHHcCcHHHHhhCccCCCc
Confidence 999999999999999999999999999999999999999999997432 46899999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+||||||||+|||||++++|+|||||||||+||.+|++.|++.|++.++++|+|.
T Consensus 1414 ~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~ 1475 (1522)
T TIGR00957 1414 ECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLT 1475 (1522)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 29
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-68 Score=521.48 Aligned_cols=374 Identities=24% Similarity=0.325 Sum_probs=314.0
Q ss_pred eeehhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSM-ALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
.+-++||.+++.....+.+. +++...+.+..++..++..+..+.+.+.+.|.+.|..+++.||+++.+...+.+....+
T Consensus 152 ~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~ 231 (573)
T COG4987 152 GLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231 (573)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHH
Confidence 45578898888765554444 44445556667777888888999999999999999999999999999999998877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLIYFGALF-ILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVG-KAYNEFKQGEPAIE 160 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ 160 (382)
.+...+..++..+......++....++ .+++.+..+..|..+......++...+..++++..+. ..+.++.+...+..
T Consensus 232 ~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~ 311 (573)
T COG4987 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASAR 311 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHH
Confidence 666666666665555544443322222 2333333455677765555555555566677777777 78899999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
|+.++.+.+++...+ +. +.+.....++++||||+|+++++++|+|+||++++||++||+|+|||||||++++++|.|+
T Consensus 312 Rl~~i~~q~~e~~~~-~~-~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 312 RLNDILDQKPEVTFP-DE-QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred HHhhhccCCcccCCC-cc-ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC
Confidence 999999877765333 11 1122222799999999999988889999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|+|.++|.++.+++.+.+|+.+++++|.+++|++|+|||+.++++ +++||+++++++.+++++++++.|+||+|+
T Consensus 390 ~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~--~AsDEel~~aL~qvgL~~l~~~~p~gl~t~ 467 (573)
T COG4987 390 PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP--DASDEELWAALQQVGLEKLLESAPDGLNTW 467 (573)
T ss_pred CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHcCHHHHHHhChhhhhch
Confidence 999999999999999999999999999999999999999999999987 479999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||+|.+||||||||+||||+|++|.|++||||||.+||+.||+++++.|.+..++||+|+
T Consensus 468 lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~ 528 (573)
T COG4987 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLM 528 (573)
T ss_pred hccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 30
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.7e-67 Score=510.14 Aligned_cols=373 Identities=28% Similarity=0.373 Sum_probs=332.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
.++|.++|+++++.++...+++.+..+-.+..++..++..+...+.+....-..++.++|++.|......++|.+....+
T Consensus 152 ~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~ 231 (580)
T COG4618 152 AVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAY 231 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35788999999999988877777766667777777888888999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+.+.+..-....+..+.-.. .+....++.+|+|+++.|++|.|.+++-..+..+.+.|+......|.++..+..+++|
T Consensus 232 L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~R 311 (580)
T COG4618 232 LSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKR 311 (580)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 776665554444444444322 4557788899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.+++...++... ..+.|.+.+.+.++++++.-|+.++++++|+||++++||.+|||||||||||||.|+|.|.++|
T Consensus 312 l~~lL~~~p~~~~---~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p 388 (580)
T COG4618 312 LNELLAELPAAAE---RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP 388 (580)
T ss_pred HHHHHHhCccccC---CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc
Confidence 9999886554322 2455667889999999998888778999999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
.+|.|.+||-++++++.+.+-++|||.|||..||+|||.|||+-..+ +.|++.+.++.+.++.||.|.++|+||||.|
T Consensus 389 ~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~i 466 (580)
T COG4618 389 TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRI 466 (580)
T ss_pred CCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCcc
Confidence 99999999999999999999999999999999999999999974443 4688999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
|++|..|||||||||+|||||+.||.+++||||.|+||.+.|..+.++|.+.++ +.|+|
T Consensus 467 G~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vv 526 (580)
T COG4618 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVV 526 (580)
T ss_pred CCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999999999999999999999874 56665
No 31
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-68 Score=506.63 Aligned_cols=374 Identities=31% Similarity=0.451 Sum_probs=329.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
+...++|+.++++++++.++.++.....-.-....+++.++.+..++...|.+-+.+++|.||.|+++..+|.+..+.+.
T Consensus 77 ~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~ 156 (497)
T COG5265 77 LWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYE 156 (497)
T ss_pred HHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHH
Confidence 34558999999999888887766655444444556677888899999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 162 (382)
+...+......+++.....++ .........+...+..|++|+|.++....++.++..|+..++..+.++.++...++++
T Consensus 157 ~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~m 236 (497)
T COG5265 157 KAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKM 236 (497)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHH
Confidence 776666544444443333332 3344555667788889999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCC-CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 163 FDLTKFKSKVIEKPDAVSLD-HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+++++.+.+..+.++..+.. ...+.+.|++|+|.|.++ .++|+++||++++|+++|+|||||+||||++++|.|||++
T Consensus 237 fdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~ 315 (497)
T COG5265 237 FDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV 315 (497)
T ss_pred HHhhccchhhccCCCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 99998777665555444443 346789999999999875 5799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|.|.+||+|+++...+++|+.||.||||..||++|+..|+.+|++ +.+++++..+++.+++++++..+|+||||.|
T Consensus 316 ~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~--~at~eev~aaa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 316 NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred cCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc--cccHHHHHHHHHHhhhhHHHHhCchhhhccc
Confidence 99999999999999999999999999999999999999999999997 5789999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
||+|-.||||||||+|+||+++++|+|++|||+||+||..||++|+.+|++..++||++
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttl 452 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTL 452 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999876
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.5e-66 Score=581.39 Aligned_cols=375 Identities=19% Similarity=0.233 Sum_probs=300.9
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
++++.+|.+.++++.++.+++.+..++.+..++..+......+.+.+.+.|.++|+++||+|+.++.+.++|.+..+...
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 44566665444333333333344455566666667777788889999999999999999999999999999988777666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLI-YFG--ALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
+..+.......+......++ .+. .++++.++..+...+.+++|.+..++++...+..|+..+...+..++.++.+++
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544433333322222221 111 122222222333445678998888888888999999999999999999999999
Q ss_pred HHHHhhcCccccc-CC-------------------------CCCC----CCCCCCCcEEEEeEEEEeCCCCCCccceeeE
Q 016798 161 RLFDLTKFKSKVI-EK-------------------------PDAV----SLDHINGDVKFCNISFKYADNMPLVLDQLNL 210 (382)
Q Consensus 161 ri~~~~~~~~~~~-~~-------------------------~~~~----~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl 210 (382)
|+.++++..++.. .. +... +.....+.|+|+||+|+|+++.+++|+||||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf 1331 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSF 1331 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceE
Confidence 9999986322110 00 0000 0111246899999999998765679999999
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~ 290 (382)
+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||+||+|||||||..++
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--- 1408 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--- 1408 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC-CCEEEEeCcCCCCCHHHHHHHHHH
Q 016798 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN-SSVLILDEATSALDSRSELLVRQA 369 (382)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~-~~ililDEpts~LD~~~~~~i~~~ 369 (382)
++++++++++++.+++++++.++|+||||.+||+|.+|||||||||||||||+++ |+|||||||||+||.+|++.|++.
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHHhCCCceec
Q 016798 370 VDRLLGHHTVRE 381 (382)
Q Consensus 370 l~~~~~~~TvI~ 381 (382)
|++.++++|+|.
T Consensus 1489 L~~~~~~~TvI~ 1500 (1560)
T PTZ00243 1489 VMSAFSAYTVIT 1500 (1560)
T ss_pred HHHHCCCCEEEE
Confidence 999999999874
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-65 Score=575.69 Aligned_cols=378 Identities=29% Similarity=0.414 Sum_probs=325.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++|++||.|++++++++|+++++..++.+++++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+....+
T Consensus 190 i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~ 269 (1466)
T PTZ00265 190 IWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLY 269 (1466)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999888888888889999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGG--------SFDGCSLVSFITSLVFMIEPIQGVGKAYNEFK 153 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g--------~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~ 153 (382)
.+...+......+...+.. +.++..++++|+|++++..| .+++|.+++++.+....+.++..+...+..++
T Consensus 270 ~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~ 349 (1466)
T PTZ00265 270 SKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYM 349 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666655555433333 33455677889999999875 57888888877766655566667777889999
Q ss_pred HHHHHHHHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHH
Q 016798 154 QGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232 (382)
Q Consensus 154 ~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~ 232 (382)
.+..+.+|+.++++.+++..........+ ..+.|+++||+|+|++.. .++|+|+||+|++||++|||||||||||||+
T Consensus 350 ~a~~a~~ri~~ii~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl 428 (1466)
T PTZ00265 350 KSLEATNSLYEIINRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL 428 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999999998766532211111112 124799999999998642 4699999999999999999999999999999
Q ss_pred HHHhhCCCCCCceEEE-cCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCC----------------------
Q 016798 233 KLLLRLYDPLSGCILV-DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM---------------------- 289 (382)
Q Consensus 233 ~ll~g~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~---------------------- 289 (382)
++|+|+|+|++|+|.+ ||.++.+++..++|++|+||+|+|.+|++||+|||.++...
T Consensus 429 ~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1466)
T PTZ00265 429 KLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENK 508 (1466)
T ss_pred HHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccc
Confidence 9999999999999999 57999999999999999999999999999999999987420
Q ss_pred ---------------------------------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 290 ---------------------------------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 290 ---------------------------------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
.+.++++++++++.+++++++.++|+||||.+|++|.+|||||||||
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRi 588 (1466)
T PTZ00265 509 NKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI 588 (1466)
T ss_pred cccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHH
Confidence 13467899999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+||||++++|+|||||||||+||+++++.|++.|+++. +++|+|+
T Consensus 589 aIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIi 635 (1466)
T PTZ00265 589 SIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 99999999999999999999999999999999999986 4788874
No 34
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-65 Score=579.41 Aligned_cols=347 Identities=23% Similarity=0.337 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 016798 28 AYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ--LIYF 105 (382)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 105 (382)
.++.+..++..+......+...+.+.|+++|+++||+|+.++.+.+++.+..+.. .+............. ...+
T Consensus 1071 ~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~wl~~~l~~~ 1146 (1622)
T PLN03130 1071 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN----IRFTLVNMSSNRWLAIRLETL 1146 (1622)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556667778899999999999999999999876666555444332 222222111111111 1112
Q ss_pred HHHHHHHHHHHHHhCCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCC-CCC
Q 016798 106 GALFILCGGSLLVSGGS-FD-----GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK-PDA 178 (382)
Q Consensus 106 ~~~~~~~~g~~lv~~g~-~t-----~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-~~~ 178 (382)
..+++++.+.+.+..+. .+ .+.+..++.+...+..++..+...+..++.+..+++|+.++++.++|.... ...
T Consensus 1147 ~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~ 1226 (1622)
T PLN03130 1147 GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENN 1226 (1622)
T ss_pred HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCC
Confidence 22333334444444332 11 223333344455566677777777888899999999999998876654221 111
Q ss_pred CCC--CCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC
Q 016798 179 VSL--DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256 (382)
Q Consensus 179 ~~~--~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~ 256 (382)
.+. .+..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 1227 ~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i 1306 (1622)
T PLN03130 1227 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF 1306 (1622)
T ss_pred CCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC
Confidence 111 123578999999999976556799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 257 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+.+++|++|++|||||++|+|||||||.+++ +.++++++++++.+++++++.++|+||||++||+|.+|||||||||
T Consensus 1307 ~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~---~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1307 GLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN---EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred CHHHHHhccEEECCCCccccccHHHHhCcCC---CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999999999999999999998875 3589999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||||+++|+|||||||||+||.+||+.|+++|++.++++|+|.
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~ 1428 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1428 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999999999999999999999999999999999999999874
No 35
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-65 Score=576.47 Aligned_cols=345 Identities=22% Similarity=0.353 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 32 ERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFIL 111 (382)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (382)
+..++..+......+...+.+.|.++|+++||+|+.++.+.+++.+..+...+..........+...... .+..++++
T Consensus 1072 ~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~--~~~~~~~~ 1149 (1495)
T PLN03232 1072 STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLE--TLGGVMIW 1149 (1495)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4445566666778889999999999999999999998877666655444332222111111111111111 12223333
Q ss_pred HHHHHHHhC-CCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCC-CCCCCC--C
Q 016798 112 CGGSLLVSG-GSF----D-GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK-PDAVSL--D 182 (382)
Q Consensus 112 ~~g~~lv~~-g~~----t-~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-~~~~~~--~ 182 (382)
+.+.+.+.. +.+ . .+.+..++.+...+..|+..+...+..++.+..+++|+.++++.++|.... ....+. .
T Consensus 1150 ~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~ 1229 (1495)
T PLN03232 1150 LTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGW 1229 (1495)
T ss_pred HHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCC
Confidence 334444432 332 1 222333556677788899999999999999999999999999876653221 111111 1
Q ss_pred CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh
Q 016798 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 183 ~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
+..+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 1230 p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1309 (1495)
T PLN03232 1230 PSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309 (1495)
T ss_pred CCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHH
Confidence 23468999999999976556799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++|||||++|+|||||||.+++ +.++++++++++.++++++++++|+||||.+||+|.+||||||||+||||||
T Consensus 1310 ~~i~iVpQdp~LF~gTIr~NL~~~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232 1310 RVLSIIPQSPVLFSGTVRFNIDPFS---EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred hhcEEECCCCeeeCccHHHHcCCCC---CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998875 4689999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++|+|||||||||+||.+|++.|++.|++..+++|+|.
T Consensus 1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~ 1425 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLV 1425 (1495)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999884
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3e-63 Score=559.14 Aligned_cols=369 Identities=18% Similarity=0.287 Sum_probs=294.7
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
++++++|.++++++.++++++++..++.+..++..+......+.+.+.+.|+++|+.+||+|+.++.+.+++.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45667777665544444444444455666666677777788899999999999999999999999999999988776543
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLIY---FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
+..........+......++. ...+++++++ ...++.|.+..++++...+..++..+...+..+..+..+++
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~-----~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~e 1173 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIG-----TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVS 1173 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222222221111111 1111112222 22345566666666777788899999999999999999999
Q ss_pred HHHHhhcCcccccCCCCC---------------CC--CCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECC
Q 016798 161 RLFDLTKFKSKVIEKPDA---------------VS--LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGP 223 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~---------------~~--~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~ 223 (382)
|+.++++.+++....... .+ ..+..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+
T Consensus 1174 Ri~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGr 1253 (1490)
T TIGR01271 1174 RVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGR 1253 (1490)
T ss_pred HHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECC
Confidence 999998766553211000 00 0123468999999999987667899999999999999999999
Q ss_pred CCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHH
Q 016798 224 SGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303 (382)
Q Consensus 224 sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~ 303 (382)
||||||||+++|+|+++ ++|+|.+||+|+++++.+++|++++||||||++|+|||||||.... ..+|++++++++.
T Consensus 1254 SGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~---~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1254 TGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE---QWSDEEIWKVAEE 1329 (1490)
T ss_pred CCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc---CCCHHHHHHHHHH
Confidence 99999999999999997 7999999999999999999999999999999999999999996543 4689999999999
Q ss_pred cChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 304 ~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++++++.++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||.+|++.|++.|++.++++|+|.
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~ 1407 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVIL 1407 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.1e-63 Score=515.18 Aligned_cols=366 Identities=19% Similarity=0.203 Sum_probs=297.7
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchH--HHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEM--CESARFRRLAH 80 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~ 80 (382)
++|+++||.+++++++++|+.+++..++.++.++...+.++..+++++.+.|.++|++++|+++.++ ...+++++..+
T Consensus 145 ~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~ 224 (555)
T TIGR01194 145 AYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESAN 224 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHH
Confidence 5678999999999998888888888888888888888889999999999999999999999999854 44667776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 81 SDLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (382)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (382)
+..+...+..........+.... .+...+.+++|++ .+.+|+|.+++++++...+..|+..++..+..++++..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~ 301 (555)
T TIGR01194 225 NIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433332222211211111 1112222333333 2689999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccc--c-CCCCCC-----CCCCCCCcEEEEeEEEEeCCC---CCCccceeeEEeeCCCEEEEECCCCCcH
Q 016798 160 ERLFDLTKFKSKV--I-EKPDAV-----SLDHINGDVKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGK 228 (382)
Q Consensus 160 ~ri~~~~~~~~~~--~-~~~~~~-----~~~~~~~~i~~~~v~f~y~~~---~~~~l~~isl~i~~G~~~aivG~sGsGK 228 (382)
+|+.++++.+++. . +.+... +.....++|+++||+|+|++. .+++|+|+||++++||++||||||||||
T Consensus 302 ~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGK 381 (555)
T TIGR01194 302 QRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGK 381 (555)
T ss_pred HHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCH
Confidence 9999997532111 1 001000 111224579999999999853 2369999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHH
Q 016798 229 STLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308 (382)
Q Consensus 229 STl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (382)
|||+++|+|+|+|++|+|.+||.++.+++.+++|++++||+|||++|++|+++|. .+ +.++++++++++.+++++
T Consensus 382 STl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~--~~~~~~~~~~~~~~~l~~ 456 (555)
T TIGR01194 382 STLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GE--HASLDNAQQYLQRLEIAD 456 (555)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---cc--chhHHHHHHHHHHcCCch
Confidence 9999999999999999999999999999999999999999999999999999995 22 357889999999999999
Q ss_pred HHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHH-HH-hCCCceec
Q 016798 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD-RL-LGHHTVRE 381 (382)
Q Consensus 309 ~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~-~~-~~~~TvI~ 381 (382)
+++.+|+||||. .+||||||||++||||++++|+|+|||||||+||+++++.+.+.+. .+ .+++|+|.
T Consensus 457 ~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 457 KVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred hhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999995 8999999999999999999999999999999999999999998764 34 35788874
No 38
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-62 Score=529.62 Aligned_cols=372 Identities=24% Similarity=0.379 Sum_probs=312.2
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
++.+..|.+.++++.+..+++.+.+++.+-.++..+-...+++...+.+.|++.|+.|||+|+.++++.+++.+..+.+.
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 34556777777666666777777777777778888888889999999999999999999999999999999988776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG--GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~--g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
+..+-.....-++..-..+ ++.++++..+...+.. +..+.|.+-..++|...+...+..+.....++...+.+++|
T Consensus 1032 ~~~f~~~~a~RWla~Rle~--ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVER 1109 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLEL--LGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVER 1109 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhH
Confidence 4433322211122221222 2222333333333332 22667888888888888988999999999999999999999
Q ss_pred HHHhhcCcccccCC-CC--CCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 162 LFDLTKFKSKVIEK-PD--AVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 162 i~~~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+.++.+.++|.+.. +. ..+..+..|+|+|+|++.+|.++.+++|+||||+|+|||++||||++|||||||+++|.|+
T Consensus 1110 v~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1110 VLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred HHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh
Confidence 99999877662111 11 1222345789999999999998878999999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 239 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
.+|.+|+|.|||+|+.+++++++|++++++||||.||+||+|.|| +|..+.+|+++|+|+++|++.+++.++|.|||
T Consensus 1190 ~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NL---DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1190 VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL---DPFDEYSDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred cCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccccc---CcccccCHHHHHHHHHHhChHHHHhhCCcCCC
Confidence 999999999999999999999999999999999999999999999 56667899999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
+.|.|+|.|+|-||||.+||||||+|+++||+|||+|+++|.+|...|++.|++.+++||||
T Consensus 1267 ~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVl 1328 (1381)
T KOG0054|consen 1267 SEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVL 1328 (1381)
T ss_pred ceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.2e-61 Score=543.40 Aligned_cols=338 Identities=22% Similarity=0.304 Sum_probs=284.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 26 VIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYF 105 (382)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (382)
+..++.+++.+..++.++..++..+.+.|.++|+++||++++|+.+.+++++..++..+...+......+...+... ..
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~-~~ 534 (1495)
T PLN03232 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS-IP 534 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44567788888899999999999999999999999999999999999999887766544443333332222111111 11
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCC
Q 016798 106 GALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHIN 185 (382)
Q Consensus 106 ~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~ 185 (382)
..+.++++|++++.+|.+|+|.+++++.++..+..|+..++..+..+.++..+++|+.++++.+++..... .......
T Consensus 535 ~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~ 612 (1495)
T PLN03232 535 VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQPGA 612 (1495)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCCCC
Confidence 12334567888999999999999999999999999999999999999999999999999987654321111 1111123
Q ss_pred CcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 186 GDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
+.|+++|++|+|++. ++++|+|+||+|++||+++||||||||||||+++|+|+++|++|.+. .+|++
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCc
Confidence 479999999999853 35799999999999999999999999999999999999999998773 35789
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||+|+|+||++||||||.+|++ .++++++++++.|+++++++.+|+|++|.|||+|.+||||||||||||||+++
T Consensus 681 Iayv~Q~p~Lf~gTIreNI~fg~~---~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 757 (1495)
T PLN03232 681 VAYVPQVSWIFNATVRENILFGSD---FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1495)
T ss_pred EEEEcCccccccccHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence 999999999999999999999974 57899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHH-HHHHhCCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~TvI~ 381 (382)
+|+|+|||||||+||+++++++.+. ++...+++|+|.
T Consensus 758 ~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~Il 795 (1495)
T PLN03232 758 NSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVL 795 (1495)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEE
Confidence 9999999999999999999988654 666778899874
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-60 Score=538.31 Aligned_cols=341 Identities=24% Similarity=0.325 Sum_probs=284.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 22 SMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ 101 (382)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (382)
+++++..++.+++++..++..+...+..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+......+...+..
T Consensus 452 l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 531 (1622)
T PLN03130 452 LMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILN 531 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778888888899999999999999999999999999999999999988766544333222222222111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCC
Q 016798 102 LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL 181 (382)
Q Consensus 102 ~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 181 (382)
.. ...+.++++|++++.+|.+|+|.+++++.++..+..|+..++..+..+.++..+++|+.++++.++..... .. +.
T Consensus 532 ~~-~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~-~~-~~ 608 (1622)
T PLN03130 532 SI-PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP-NP-PL 608 (1622)
T ss_pred HH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-CC-cc
Confidence 11 11344556788888899999999999999999999999999999999999999999999998754322111 11 11
Q ss_pred CCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC-ceEEEcCEeCCCCCHH
Q 016798 182 DHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLD 259 (382)
Q Consensus 182 ~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~-G~i~~~g~~~~~~~~~ 259 (382)
....+.|+++|++|+|++. ++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+
T Consensus 609 ~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l----------- 677 (1622)
T PLN03130 609 EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI----------- 677 (1622)
T ss_pred cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----------
Confidence 1123479999999999853 3579999999999999999999999999999999999999999 89973
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
|++|+||+|+|+||++||||||.+|++ .++++++++++.|+++++++.||+|++|.|||+|.+|||||||||+||
T Consensus 678 --~~~Iayv~Q~p~LfngTIreNI~fg~~---~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLA 752 (1622)
T PLN03130 678 --RGTVAYVPQVSWIFNATVRDNILFGSP---FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA 752 (1622)
T ss_pred --cCeEEEEcCccccCCCCHHHHHhCCCc---ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHH
Confidence 668999999999999999999999975 578999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHhCCCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVR-QAVDRLLGHHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~~~TvI~ 381 (382)
||++++|+|+|||||||+||+++++++. ++++...++||+|.
T Consensus 753 RAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIl 795 (1622)
T PLN03130 753 RAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVL 795 (1622)
T ss_pred HHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEE
Confidence 9999999999999999999999998875 56777778899874
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1e-58 Score=479.73 Aligned_cols=360 Identities=23% Similarity=0.249 Sum_probs=275.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCch---HHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAE---MCESARFRRLA 79 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~ 79 (382)
++|+++||.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ ..+.+++++..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 4678999999999999999998888889999999888999999999999999999999996 4443 34556676665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 80 HSDLCELLKKRKMKALIPQTVQLIYFG-ALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPA 158 (382)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (382)
++..+...+.................. ..+.++++... +..+.+.+.++..+...+..|+..+...+..++.+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443333332222211111111111 11111222211 12234444444444555678999999999999999999
Q ss_pred HHHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 159 IERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 159 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.+|+.++++.+.+.... ...+.+ ..+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 296 ~~ri~~l~~~~~~~~~~-~~~~~~-~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 372 (547)
T PRK10522 296 FNKLNKLALAPYKAEFP-RPQAFP-DWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372 (547)
T ss_pred HHHHHHHhccccccccc-cccccC-cCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999987544322111 111111 13579999999999853 4699999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 239 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
|+|++|+|.+||+++.+++.+++|++++||+|||++|++|++|| +. +.++++++++++.+++++++.. |+|.
T Consensus 373 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~---~~~~~~~~~~~~~~~l~~~~~~-~~~~- 444 (547)
T PRK10522 373 YQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GK---PANPALVEKWLERLKMAHKLEL-EDGR- 444 (547)
T ss_pred CCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cC---chHHHHHHHHHHHcCCchhhhc-cccC-
Confidence 99999999999999999999999999999999999999999999 22 3567788888888777666542 4342
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
.+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+.. +++|+|.
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~ 505 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFA 505 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1489999999999999999999999999999999999999999999997654 4788874
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.1e-56 Score=472.07 Aligned_cols=361 Identities=17% Similarity=0.193 Sum_probs=297.0
Q ss_pred eeh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 5 MLV-ISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 5 l~~-~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
|+. ++|.+++++++.+|+..++.+++.+++.+...+.++..+++.+.+.|.++|+++||+|+.++.+.+++++..++..
T Consensus 233 L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~ 312 (659)
T TIGR00954 233 LLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLV 312 (659)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 454 8999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-hC----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLIY---FGALFILCGGSLLV-SG----GSFDGCSLVS-FITS---LVFMIEPIQGVGKAYNE 151 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~lv-~~----g~~t~g~l~~-~~~~---~~~~~~~~~~l~~~~~~ 151 (382)
+...+..+.......+..++. ...++++++|...+ .. |.+|.|.+++ |..+ +..+..|+..+...+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~ 392 (659)
T TIGR00954 313 EHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRD 392 (659)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666555544443332 12233333444233 22 6899888766 5544 55668999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccC----C---CC---C-------------CCCCCCCCcEEEEeEEEEeCCCCCCcccee
Q 016798 152 FKQGEPAIERLFDLTKFKSKVIE----K---PD---A-------------VSLDHINGDVKFCNISFKYADNMPLVLDQL 208 (382)
Q Consensus 152 ~~~~~~~~~ri~~~~~~~~~~~~----~---~~---~-------------~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i 208 (382)
++++..+.+|+.++++.+++... . .. . .......+.|+++||+|+|+++ +++|+|+
T Consensus 393 i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~i 471 (659)
T TIGR00954 393 MTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-Ceeeecc
Confidence 99999999999999875332110 0 00 0 0011123569999999999754 3699999
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCC
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~ 288 (382)
||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++||+.++..
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999998763 668999999999999999999998642
Q ss_pred -----CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHH
Q 016798 289 -----MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363 (382)
Q Consensus 289 -----~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~ 363 (382)
..+.++++++++++.++++++++. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||++++
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 123467889999999999999988 999999986 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceec
Q 016798 364 LLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 364 ~~i~~~l~~~~~~~TvI~ 381 (382)
+.+.+.+++. ++|+|.
T Consensus 619 ~~l~~~l~~~--~~tvI~ 634 (659)
T TIGR00954 619 GYMYRLCREF--GITLFS 634 (659)
T ss_pred HHHHHHHHHc--CCEEEE
Confidence 9999999874 778763
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.5e-55 Score=498.12 Aligned_cols=351 Identities=20% Similarity=0.258 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 14 LISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMK 93 (382)
Q Consensus 14 li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (382)
++.++++++++++..++.+++++..++..+...+..+.+.|.++|+++||++++|+.+.+++++..++..+...+.....
T Consensus 461 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~ 540 (1522)
T TIGR00957 461 LAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLH 540 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666777778889999999999999999999999999999999999999999999887765544332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 016798 94 ALIPQTVQLIYFGALFILCGGSLLVS--GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK 171 (382)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~lv~--~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 171 (382)
.+.. .........+.++.++.+.+. ++.++.+..++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++
T Consensus 541 ~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 619 (1522)
T TIGR00957 541 AVGT-FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEEL 619 (1522)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 2211 111111112222334556655 3568899999988888889999999999999999999999999999876543
Q ss_pred ccCCCCCCCCC-CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 172 VIEKPDAVSLD-HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 172 ~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
........... ...+.|+++|++|+|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 620 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 699 (1522)
T TIGR00957 620 EPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG 699 (1522)
T ss_pred ccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC
Confidence 21110001111 11237999999999986545799999999999999999999999999999999999999999999987
Q ss_pred EeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 251 HDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 251 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
+|+||+|+|++|++||+|||.+|.+ .++++.+++++.+++.+++..+|+|++|.+|++|.+|||
T Consensus 700 -------------~i~yv~Q~~~l~~~Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSG 763 (1522)
T TIGR00957 700 -------------SVAYVPQQAWIQNDSLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSG 763 (1522)
T ss_pred -------------EEEEEcCCccccCCcHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCH
Confidence 5999999999999999999999864 467888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHH---HhCCCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR---LLGHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~---~~~~~TvI~ 381 (382)
|||||++||||++++|+|+|||||||+||+++++.+.+.+.+ +.+++|+|.
T Consensus 764 GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIl 817 (1522)
T TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRIL 817 (1522)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEE
Confidence 999999999999999999999999999999999999999864 456788874
No 44
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-55 Score=474.27 Aligned_cols=350 Identities=24% Similarity=0.314 Sum_probs=288.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 14 LISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMK 93 (382)
Q Consensus 14 li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (382)
++.++++.+++.+..++.+++.+.+.+.++...+.....+|.++||++||+|++|+.+.++..+..++..+...+.....
T Consensus 345 ~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~ 424 (1381)
T KOG0054|consen 345 LAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLS 424 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777888999999999999999999999999999999999999999999999887765443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 016798 94 ALIPQTVQLIYFGALFILCGGSLL-VSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV 172 (382)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~l-v~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 172 (382)
++........-. .+.+..++.+. ...+.++....++.++++..+-.|+..++..+..+.++.++.+|+.+++..++..
T Consensus 425 ~~~~~~~~~~p~-lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~ 503 (1381)
T KOG0054|consen 425 ALNSFLNFFSPV-LVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELD 503 (1381)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 332222221111 11222233433 4566788888889999999999999999999999999999999999998754332
Q ss_pred cCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE
Q 016798 173 IEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251 (382)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~ 251 (382)
.......+.......++++|.+|++++. .++.|+||||+|++|+.+||||+.|||||+|+..|+|..+..+|+|.++|.
T Consensus 504 ~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs 583 (1381)
T KOG0054|consen 504 PDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS 583 (1381)
T ss_pred ccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe
Confidence 2211111222334579999999999863 345999999999999999999999999999999999999999999999884
Q ss_pred eCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 252 ~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
++||||+||||+|||||||.||.+ +++++.++++++|+|+..++.||.|..|.|||+|.+||||
T Consensus 584 -------------iaYv~Q~pWI~ngTvreNILFG~~---~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGG 647 (1381)
T KOG0054|consen 584 -------------VAYVPQQPWIQNGTVRENILFGSP---YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGG 647 (1381)
T ss_pred -------------EEEeccccHhhCCcHHHhhhcCcc---ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHh
Confidence 999999999999999999999986 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHhCCCcee
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVR-QAVDRLLGHHTVR 380 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~~~TvI 380 (382)
|||||+||||+++|+||++||+|.||+|+++.+.|. ++++...++||+|
T Consensus 648 QKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~I 697 (1381)
T KOG0054|consen 648 QKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVI 697 (1381)
T ss_pred HHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEE
Confidence 999999999999999999999999999999776655 5677778899987
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.7e-53 Score=476.60 Aligned_cols=353 Identities=19% Similarity=0.250 Sum_probs=288.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHH
Q 016798 6 LVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCE 85 (382)
Q Consensus 6 ~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 85 (382)
+++....+++.++++++++++..++.+++.+..++.++...+..+.+.|.++|+++||++++|+.+.+++++..+...+.
T Consensus 217 ~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~ 296 (1490)
T TIGR01271 217 WELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKL 296 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33445566777777888888888899999999999999999999999999999999999999999999988877655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 016798 86 LLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPI-QGVGKAYNEFKQGEPAIERLFD 164 (382)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ri~~ 164 (382)
..+......+... ........+.++.++.|.+..+ ++.+.+++++.++..+..|+ ..++..+..+.++.++++||.+
T Consensus 297 ~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~ 374 (1490)
T TIGR01271 297 TRKIAYLRYFYSS-AFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQD 374 (1490)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222111 1111122333444566666554 67888898888888887787 4799999999999999999999
Q ss_pred hhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCC--------------------------------CCCccceeeEEe
Q 016798 165 LTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN--------------------------------MPLVLDQLNLHI 212 (382)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~--------------------------------~~~~l~~isl~i 212 (382)
++..++...... ......++++|++|.|+.. .+++|+|+||+|
T Consensus 375 fL~~~e~~~~~~-----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i 449 (1490)
T TIGR01271 375 FLCKEEYKTLEY-----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKL 449 (1490)
T ss_pred HhcCcccccccc-----cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEE
Confidence 997543221110 0112358899999998531 135899999999
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~ 292 (382)
++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|+|++|++||+|||.||.+ .
T Consensus 450 ~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~---~ 513 (1490)
T TIGR01271 450 EKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS---Y 513 (1490)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc---c
Confidence 99999999999999999999999999999999999987 4999999999999999999999864 3
Q ss_pred CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHH-HHH
Q 016798 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ-AVD 371 (382)
Q Consensus 293 ~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~-~l~ 371 (382)
++++..++++.+++.+++..+|+|++|.+|++|.+|||||||||+||||++++|+++|||||||+||+.+++.+.+ .++
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~ 593 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 5667788899999999999999999999999999999999999999999999999999999999999999999997 467
Q ss_pred HHhCCCceec
Q 016798 372 RLLGHHTVRE 381 (382)
Q Consensus 372 ~~~~~~TvI~ 381 (382)
++.+++|+|.
T Consensus 594 ~~~~~~tvil 603 (1490)
T TIGR01271 594 KLMSNKTRIL 603 (1490)
T ss_pred HHhcCCeEEE
Confidence 7778889874
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.9e-51 Score=460.15 Aligned_cols=358 Identities=20% Similarity=0.225 Sum_probs=285.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 016798 7 VISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCEL 86 (382)
Q Consensus 7 ~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 86 (382)
.+-...+++.++++++++.+..++.+++.+..++..+...+..+.+.|.++|+++||++++|+.+.+++.+..++..+..
T Consensus 383 ~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l 462 (1560)
T PTZ00243 383 RLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYL 462 (1560)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666777777788899999999999999999999999999999999999999999999998776555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016798 87 LKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLT 166 (382)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~ 166 (382)
.+......+...+...... .+.++.+++|.+.++.+|++.+++++.++..+..|+..+...+..+.++.++++||.+++
T Consensus 463 ~~~~~~~~~~~~~~~~~p~-l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL 541 (1560)
T PTZ00243 463 RDVQLARVATSFVNNATPT-LMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFL 541 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222222211111 122234567778889999999999999999999999999999999999999999999998
Q ss_pred cCccccc-------CC--------CC-C-------------CC-----------------------------CCCCCCcE
Q 016798 167 KFKSKVI-------EK--------PD-A-------------VS-----------------------------LDHINGDV 188 (382)
Q Consensus 167 ~~~~~~~-------~~--------~~-~-------------~~-----------------------------~~~~~~~i 188 (382)
+.++... +. .. . .+ .....+.+
T Consensus 542 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1560)
T PTZ00243 542 ECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSV 621 (1560)
T ss_pred cCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 6543100 00 00 0 00 00011356
Q ss_pred EEEeEEEEeCC--------------------------------------CCCCccceeeEEeeCCCEEEEECCCCCcHHH
Q 016798 189 KFCNISFKYAD--------------------------------------NMPLVLDQLNLHIRAGETVALIGPSGGGKST 230 (382)
Q Consensus 189 ~~~~v~f~y~~--------------------------------------~~~~~l~~isl~i~~G~~~aivG~sGsGKST 230 (382)
.++|++|.++. +++++|+|+||+|++||+++|+|||||||||
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKST 701 (1560)
T PTZ00243 622 VVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKST 701 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHH
Confidence 77787776431 1235899999999999999999999999999
Q ss_pred HHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHH
Q 016798 231 LAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310 (382)
Q Consensus 231 l~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i 310 (382)
|+++|+|+++|++|+|.++ ++|+|++|+|++|++|++|||.++.+ .+.+++.++++.+++++++
T Consensus 702 LL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~---~~~~~~~~~~~~~~l~~~l 765 (1560)
T PTZ00243 702 LLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE---EDAARLADAVRVSQLEADL 765 (1560)
T ss_pred HHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh---hhHHHHHHHHHHhhhHHHH
Confidence 9999999999999999852 47999999999999999999999764 3566788899999999999
Q ss_pred HhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHhCCCceec
Q 016798 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVRE 381 (382)
Q Consensus 311 ~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~TvI~ 381 (382)
+.+|+|++|.+|++|.+||||||||++||||++.+|+++|||||||+||+.+++.+.+. +....+++|+|.
T Consensus 766 ~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIl 837 (1560)
T PTZ00243 766 AQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVL 837 (1560)
T ss_pred HHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999988888764 444556788874
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.5e-48 Score=366.94 Aligned_cols=192 Identities=27% Similarity=0.463 Sum_probs=179.6
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++|+++|++|+|+++.+++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.+||.++..++..++|+.+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 4689999999997555579999999999999999999999999999999999997 789999999999999999999999
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|+||+|.+|++|++||+.... ..++++++++++.+++.+++..+|.+|+|.++++|.+||||||||++||||++++
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999996432 2457889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+|+||||||++||+.+.+.+++.|++..+++|+|.
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~ 192 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVIL 192 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999888888874
No 48
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-48 Score=340.32 Aligned_cols=187 Identities=35% Similarity=0.502 Sum_probs=168.4
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC-----ceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-----GCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~-----G~i~~~g~~~~~--~~~ 258 (382)
..++++||++.|++ ..+|+|||++|++++++|++|||||||||+++++.++.+..+ |+|.++|+|+-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999975 469999999999999999999999999999999999999876 999999999976 478
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.++|++||+|+|.|.-|+.||+||+.||...+... ++.++.+++.++|++.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 89999999999999999999999999985443332 3567889999999988754 245678899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+||||||.-+|+||+||||||+|||.+..+|.+.|.+++++-|+|+
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIvi 203 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVI 203 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEE
Confidence 99999999999999999999999999999999999999998888875
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-48 Score=340.21 Aligned_cols=181 Identities=38% Similarity=0.516 Sum_probs=159.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC-CCHHHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-IRLDSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~i 265 (382)
-|+++||+++|++. .+|+|||++|++||+++|+||||||||||+++|.||-+|++|+|.+||.++.. .+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48899999999854 69999999999999999999999999999999999999999999999987743 3788899999
Q ss_pred EEecCCCccccc-cHHHHHcCCCCC-CCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
|+|+|+..||+- |+.||++++... ...+. +.-.+.++++++.+..+..| .+|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999976 999999876321 11222 33456788899999888888 79999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
|||+-+|+++++|||||||||+...++++.++++.+ +.|+|
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMi 190 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMI 190 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEE
Confidence 999999999999999999999999999999999875 56765
No 50
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8e-46 Score=340.61 Aligned_cols=193 Identities=37% Similarity=0.623 Sum_probs=178.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 36899999999985445699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|++|++.+|+.|++||+.+... .+.+++.++++..++.+++..+|.|+++.+++.+.+||||||||++||||++++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999986542 356788889999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+++||||||++||+.+++.+.+.|+++.+++|+|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 193 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLT 193 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999877777764
No 51
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.5e-45 Score=342.31 Aligned_cols=192 Identities=45% Similarity=0.727 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|+++..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 46899999997544569999999999999999999999999999999999999999999999999988777788889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+.++.. ..+.+++.+.++..++.++++.+|.|+++.+...+.+||||||||++||||++.+|+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EcCCchhccchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999988653 234566777788889999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 192 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVII 192 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999877788764
No 52
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=356.99 Aligned_cols=191 Identities=32% Similarity=0.434 Sum_probs=164.5
Q ss_pred CCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--C
Q 016798 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--I 256 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~ 256 (382)
..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 346799999999997544579999999999999999999999999999999999996 579999999999973 4
Q ss_pred CHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHH-----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER-----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 257 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~-----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
+...+|+.++||||+|++|++|++||+.++......++++ +.++++.+++ ++++++.++++|.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 5567889999999999999999999999764222233333 3455666654 345678899999999999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|.
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~ 279 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIII 279 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999999988888774
No 53
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.7e-45 Score=334.68 Aligned_cols=194 Identities=45% Similarity=0.726 Sum_probs=176.2
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++|+++|++++|++...++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 35899999999975334699999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|++|++.+|..|++||+.++... .+.+++.+.++..++.+.++.+|.|++|.+.+...+||||||||++||||++.+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCC--CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 999999999989999999876432 245677788999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 194 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLII 194 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999876677764
No 54
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=342.29 Aligned_cols=182 Identities=34% Similarity=0.510 Sum_probs=159.6
Q ss_pred EEEEeEEEEeCCC---CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---H
Q 016798 188 VKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (382)
Q Consensus 188 i~~~~v~f~y~~~---~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~ 261 (382)
|++++||+.|+.+ ...+|+||||+|++||++||+|+||||||||++++.++-.|++|+|.+||.++..++... .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999863 246899999999999999999999999999999999999999999999999988877654 5
Q ss_pred hcceEEecCCCcccc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 262 RRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
|++||+++|++.|++ .|+.||++|....+..+. +++.+.++.+++.|+.+..| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 678999999999997 699999998654444444 45567888888888887776 89999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
+|||||+.+|+||+.|||||||||+|.+.|++.|++.-+ +-|++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIv 196 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV 196 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999988753 44554
No 55
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-45 Score=336.79 Aligned_cols=193 Identities=45% Similarity=0.748 Sum_probs=177.2
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++|+++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 368999999999742 3599999999999999999999999999999999999999999999999999888878888899
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|++|++.+|++|++||+.+.... ...+++.++++..++.++++.+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999886532 345677888889999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 193 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSII 193 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999877788764
No 56
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-45 Score=319.36 Aligned_cols=182 Identities=37% Similarity=0.512 Sum_probs=163.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC---HHHHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r~~ 264 (382)
|+|+||+++|+.+ +++|+||||+|++||++-|+||||||||||+|+|++...|++|+|.++|.|+..+. ...+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999987 67999999999999999999999999999999999999999999999999998765 4478999
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
||+|+||..|... |++||++|...-...+ .+++.++++.+++.+-...+| .+|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999998865 9999998753322222 356778999999999999999 79999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||+..+|++||-||||.+||+++...|++.+.++- .+.||++
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ 192 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLM 192 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEE
Confidence 99999999999999999999999999999999875 4667765
No 57
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.8e-45 Score=330.56 Aligned_cols=183 Identities=36% Similarity=0.487 Sum_probs=154.1
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HH-
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SL- 261 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~- 261 (382)
++++||+..|..+. ..+|+++||+|++||++||+||||||||||+++|.|+..|++|.|.++|.|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56899999997543 3689999999999999999999999999999999999999999999999999988754 34
Q ss_pred hcceEEecCCCccccc-cHHHHHcC----CCCCCCCCHHHHHHHHHHcChHHHHH-hCCCCcccccCCCCCCCChHHHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTARTANADEFVR-TLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~----~~~~~~~~~~~~~~~~~~~~l~~~i~-~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
|++||||+|+.+|++. |++||+.+ .........+.....++.+++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 4579999999999866 99999984 22111112345566677777776555 444 7999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||||+.+|++++.||||++||.++.+.|++.++++.+ ++|+|+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~ 198 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM 198 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999854 567774
No 58
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-44 Score=335.71 Aligned_cols=192 Identities=57% Similarity=0.851 Sum_probs=175.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++.+.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999988777788889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+.++... .+.+++.+.++..++.++++.+|.|+++.++.....||||||||++||||++.+|+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886532 34566777888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 192 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFV 192 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999887788764
No 59
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-45 Score=331.92 Aligned_cols=181 Identities=38% Similarity=0.589 Sum_probs=162.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+|+|||++|.+ ..+++|+||+|++||++.++|||||||||++|+|.|+++|++|+|++||.++++++..++|++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 789999999984 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChH--HHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANAD--EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~--~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|-|...||+- ||.|||++-......+. +++.+.++.++++ +|..+.| .+|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999966 99999987544333444 4556778888885 4777777 799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+.+|+|+++|||++|||+.++.++++-+.++.+ ++|+|+
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivf 191 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVF 191 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEE
Confidence 99999999999999999999999999999988754 678774
No 60
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2e-44 Score=338.92 Aligned_cols=195 Identities=30% Similarity=0.533 Sum_probs=178.7
Q ss_pred CCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc
Q 016798 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 263 (382)
..+.|+++|++++|++....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 45689999999999764346999999999999999999999999999999999999999999999999998888888899
Q ss_pred ceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
.++|++|+|.+|++|++||+..... ...+++..+++..++.++++.+|.|+++.+++.+.+||||||||++||||++
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999975421 2456677888889999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++|+++||||||++||+.++..+.+.++++.+++|+|+
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 210 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVT 210 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999999998877788764
No 61
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-45 Score=331.09 Aligned_cols=177 Identities=34% Similarity=0.456 Sum_probs=157.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999986 4699999999999999999999999999999999999999999999999998542 45799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.||+= |++||+.++...... ..+.+.+.++.+++.++-+..| .+||||||||+|||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 99999999986 999999987643221 2346788899999999988888 7999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++|+||||+++||+.|+..+++-+.++.+ ++|+++
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvll 186 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL 186 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999998875 478764
No 62
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-44 Score=333.85 Aligned_cols=191 Identities=43% Similarity=0.709 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|+++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999743 359999999999999999999999999999999999999999999999999988888888889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+.++.. ..+++++...++.+++.+++..+|.|+++.+.....+||||||||++|||||+++|+
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred ECCCChhhcchHHHHHhhcCC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988653 235666778888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 191 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIV 191 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999877777764
No 63
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6e-45 Score=336.13 Aligned_cols=182 Identities=35% Similarity=0.468 Sum_probs=162.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|.+||.++.+++.+++.+++|
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999984 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcc-ccccHHHHHcCCCCC--------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITL-FSGTVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~~~~--------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
||||++.. |.-||+|-+.+|+.. ...|.+.+.++++.+++.++..+ .-..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHH
Confidence 99999764 566999999988531 11233467888999999988765 24689999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+++|+||+||||||+||..++.++++.++++.+ ++|+|+
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~ 194 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVM 194 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999874 578774
No 64
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.9e-44 Score=330.54 Aligned_cols=196 Identities=43% Similarity=0.665 Sum_probs=174.8
Q ss_pred CCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh
Q 016798 184 INGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
..+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 456799999999997532 3699999999999999999999999999999999999999999999999998877777778
Q ss_pred cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+.++|++|++.+|+.|++||+.++... ...+++.+..+..++.++++.+|.|+++.+.....+||||||||++||||+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 899999999999999999999876432 234455555666788899999999999999999999999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 204 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLV 204 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999877777764
No 65
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-44 Score=331.38 Aligned_cols=179 Identities=33% Similarity=0.464 Sum_probs=157.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++|+|.+. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+...... +..||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999854 59999999999999999999999999999999999999999999999988765432 46799
Q ss_pred EecCCCc---cccccHHHHHcCCCCCC--------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 267 LVSQDIT---LFSGTVAENIGYRDLMT--------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 267 ~v~Q~~~---lf~~ti~eNi~~~~~~~--------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
||||... -|+.||+|-+.+|+..+ ..+.+++.++++.+++.++.++ .-..|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHH
Confidence 9999664 58999999999874321 1235889999999999988755 235899999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+.|||||+.+|++|+|||||+|+|+.++..+.+.|+++++ ++||++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~ 194 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLM 194 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999999999986 788874
No 66
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=5.7e-44 Score=331.97 Aligned_cols=192 Identities=51% Similarity=0.778 Sum_probs=173.8
Q ss_pred EEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 188 VKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
|+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753 246999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
|++|++.+|+.|++||+.++... ...+++...++..++.+++..+|.|+++.+.....+||||||||++||||++.+|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC--CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999886432 2455667778888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~ 193 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAMKGRTTIV 193 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999998876778764
No 67
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.3e-44 Score=328.79 Aligned_cols=183 Identities=36% Similarity=0.516 Sum_probs=155.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~~ 264 (382)
|+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 689999999975434699999999999999999999999999999999999999999999999998766543 36788
Q ss_pred eEEecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|++|++.+|. .|++||+.++...... .++++.++++..++.++....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999886 5999999864211111 2345677788888776665544 58999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 193 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLV 193 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999998854 677763
No 68
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-44 Score=341.44 Aligned_cols=179 Identities=36% Similarity=0.579 Sum_probs=160.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|++.. +++|+||+|+.||+++|+||||||||||+++|+||.+|++|+|.+||.++.++++. .+.||
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCEE
Confidence 589999999998642 89999999999999999999999999999999999999999999999999999886 47899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
+|+|++.||+- ||+|||+|+......+ ++++.++++..++.+++++.| .+||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999976 9999999986543322 567788999999999999988 7999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
++++|++++||||+|+||++.+..+...|+++.+ +.|+|
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~I 188 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTI 188 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999999888888654 34655
No 69
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.4e-43 Score=324.92 Aligned_cols=183 Identities=35% Similarity=0.477 Sum_probs=151.6
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH----H
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS----L 261 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~----~ 261 (382)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997531 46999999999999999999999999999999999999999999999999998766432 3
Q ss_pred hcceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+++++|++|++.+|.. |++||+.++......+ ++++.++++..++.+.. .....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 5689999999999976 9999998753211111 23444555555554433 344579999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 196 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVV 196 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999865 678764
No 70
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=317.30 Aligned_cols=183 Identities=36% Similarity=0.485 Sum_probs=158.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC---HHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r~ 263 (382)
.|+++||+..||++ +.+|+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.++..++ ...+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999854 57999999999999999999999999999999999999999999999999998877 556788
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCCC------------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~~------------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
+||+++|++.|.+. |+.+|+..|+-.. ..+.....++++.+++.+..-. +..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 99999999999865 9999998664321 1123344567778887776543 5689999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
||+||++|||||+++|+|++-|||+|+||+.+.++|++.|++.. .+.|+|.
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~ 203 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIV 203 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999999999875 4678763
No 71
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.1e-43 Score=318.83 Aligned_cols=178 Identities=34% Similarity=0.533 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997642 3699999999999999999999999999999999999999999999998 5
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++|++|+|++|+.|++||+.++.. .++++..++++.+++.+++..+|.|+++.+.+....||||||||++||||++.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP---FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC---cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998643 34566778888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHH-HHHHh-CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQA-VDRLL-GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~-l~~~~-~~~TvI~ 381 (382)
+|+++||||||++||+++.+.+.+. +++.. +++|+|+
T Consensus 145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~ 183 (204)
T cd03250 145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRIL 183 (204)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEE
Confidence 9999999999999999999988874 56554 3577764
No 72
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=326.31 Aligned_cols=183 Identities=37% Similarity=0.530 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC-CCCHHHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ-NIRLDSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~-~~~~~~~r~~i 265 (382)
-++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||++++.|+++|++|.|.++|.++. +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 47899999999876 67999999999999999999999999999999999999999999999999988 47888999999
Q ss_pred EEecCCC--ccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
|||+|+| .+|..||.|.++||......+.+ ++.++++.+++.++.++.| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 69999999999999765555654 4567888888888876665 89999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC--Cceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~TvI~ 381 (382)
.+|+.+|++||||||||+||+...+.+++.++++.++ +|+|.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~ 194 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIII 194 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 9999999999999999999999999999999999764 57764
No 73
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.5e-43 Score=342.93 Aligned_cols=183 Identities=33% Similarity=0.472 Sum_probs=156.9
Q ss_pred EEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hh
Q 016798 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r 262 (382)
|+++||+++|+++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999642 246999999999999999999999999999999999999999999999999998877654 47
Q ss_pred cceEEecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
++|+|++|++.+|+ .|++||+.++......+ .+++.++++.+++.++.+..| .+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 78999999999995 69999998753211122 234567777888777665544 799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+.+|++||||||||+||+.+...+++.|+++.+ +.|+|+
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiil 196 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999864 577764
No 74
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.4e-43 Score=320.66 Aligned_cols=177 Identities=37% Similarity=0.507 Sum_probs=152.0
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++++|++
T Consensus 2 ~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 2 IENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred cccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 67999999752 369999999999999999999999999999999999999999999999998854 45677899999
Q ss_pred CCC--ccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 270 QDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 270 Q~~--~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
|++ .+|..|++||+.++........+++.++++..++.++.+..| ..||||||||++||||++.+|+
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCC
Confidence 998 467889999998754322223456778888888877665554 5899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 181 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV 181 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999884 4677764
No 75
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.9e-43 Score=324.07 Aligned_cols=183 Identities=39% Similarity=0.550 Sum_probs=155.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC-----CCCCceEEEcCEeCCCCC--HHH
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY-----DPLSGCILVDDHDVQNIR--LDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~-----~~~~G~i~~~g~~~~~~~--~~~ 260 (382)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4789999999753 6999999999999999999999999999999999999 999999999999987766 556
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
++++++|++|++.+|..|++||+.++...... .++++.++++..++.+.....++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 78899999999999988999999875321111 12455667777777665544321 47999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 195 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVI 195 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEE
Confidence 9999999999999999999999999999999999999876667663
No 76
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.7e-43 Score=319.95 Aligned_cols=182 Identities=37% Similarity=0.548 Sum_probs=152.5
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++|++++|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975324699999999999999999999999999999999999999999999999999887777788899999
Q ss_pred cCCCc--cccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 269 SQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 269 ~Q~~~--lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+|++. +++.|++||+.++......+ .+++.+.++..++.+++.+ ....||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 99984 56789999997642211112 2344556666666555443 3478999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+++|+++||||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~ 189 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIII 189 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999998864 677764
No 77
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.6e-42 Score=318.21 Aligned_cols=189 Identities=30% Similarity=0.428 Sum_probs=165.7
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH----HHHhcc
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRRH 264 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~ 264 (382)
.+.|++|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 467999999865 469999999999999999999999999999999999999999999999998876542 235678
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++|++|++.+|+.|++||+.+..+ .++++..++++..++.++++.+|.|+++.++....+||||||||++||||++.
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSP---FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCc---CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999987643 24556678888899999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHH--HHHHHhC-CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQ--AVDRLLG-HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~--~l~~~~~-~~TvI~ 381 (382)
+|+++||||||++||+.+...+.+ .++.+.+ ++|+|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~ 197 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVL 197 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999998887 5555543 567764
No 78
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=335.60 Aligned_cols=356 Identities=20% Similarity=0.206 Sum_probs=278.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 016798 8 ISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELL 87 (382)
Q Consensus 8 ~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 87 (382)
+...+..++++-+++..++..++++++.+.+.+..+..+.+...+...-++.+.|-.++.|+.+.++.++..........
T Consensus 204 I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~ 283 (604)
T COG4178 204 IPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWR 283 (604)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555566688999999999999999999999999999999999999999998887776655443222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016798 88 KKRKMKALIPQTVQLIYFG-ALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLT 166 (382)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~ 166 (382)
+.......+..+....... .++-+.+++-....|+++.|.++.....+..+...+..+...+..+..-.+...|+.++.
T Consensus 284 ~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~ 363 (604)
T COG4178 284 RLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFR 363 (604)
T ss_pred HHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2221111122222111111 233333455567789999999999999999999999999999999999999999998875
Q ss_pred cC------cccccCCCCC--CCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 167 KF------KSKVIEKPDA--VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 167 ~~------~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.. +.+....... .........|+++|++..-|++. ..+++.||++++||.+-|.||||||||||+|.|+|+
T Consensus 364 ~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 364 QALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred HHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 32 1111111100 00011146799999999988764 689999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 239 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
+|-.+|+|..-. -..+-|+||.|++-.||+||-++|-+..++.+|+++.+++.+++|.++++++.+ .+
T Consensus 443 WP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~ 510 (604)
T COG4178 443 WPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-ED 510 (604)
T ss_pred CccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cC
Confidence 999999987531 224899999999999999999999876555899999999999999999999753 22
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
. =...||+|||||+|+||.++++|++++|||+|||||.++|..+.+.+++..++.|+|
T Consensus 511 ~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvI 568 (604)
T COG4178 511 R----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVI 568 (604)
T ss_pred c----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEE
Confidence 2 247899999999999999999999999999999999999999999999988888887
No 79
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-43 Score=338.16 Aligned_cols=180 Identities=36% Similarity=0.567 Sum_probs=160.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..++++||+++|++ ..+++|+||+|++||+++++|||||||||++++|+||.+|++|+|.+||+++.+++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 36999999999983 4699999999999999999999999999999999999999999999999999998876 7789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCC-CCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLM-TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|+|+..||+- ||+|||.||... .... .+++.++++.+++.++-.+.| .+|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 999999999965 999999998651 1122 247789999999999988877 89999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
|||..+|++|+||||.|+||.+-+.+++..++++.+ +.|.|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i 191 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFV 191 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEE
Confidence 999999999999999999999999999999888754 45555
No 80
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-43 Score=325.44 Aligned_cols=181 Identities=31% Similarity=0.471 Sum_probs=151.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH---HHHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~~ 264 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 468999999974 359999999999999999999999999999999999999999999999999987664 567889
Q ss_pred eEEecCCCccccc-cHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++|++|++.+|+. |++||+.++.. ....+. +++.++++..++.++... ...+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-----------YPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 9999999999986 99999987521 111222 234455666665444433 346899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 192 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIM 192 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 9999999999999999999999999999999999864 677764
No 81
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.2e-42 Score=317.85 Aligned_cols=182 Identities=36% Similarity=0.498 Sum_probs=154.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~~ 264 (382)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 6899999999632 4699999999999999999999999999999999999999999999999999876543 46788
Q ss_pred eEEecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|++|++.+|. .|++||+.++...... .++++.++++..++.++....| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 5999999864211111 2345667777777776655544 68999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 192 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIV 192 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999754 677764
No 82
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.7e-42 Score=314.23 Aligned_cols=175 Identities=35% Similarity=0.597 Sum_probs=154.4
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
+.++++|++++|++...++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 56999999999975434699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|++|+|.+|++|++||+.+... .+.+++.++++ +.+....|||||+||++||||++.+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~---~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE---YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC---CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999976532 23444444332 2456789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+++||||||++||+.+...+.+.|+++.+++|+|.
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 179 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILT 179 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999877778764
No 83
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-42 Score=333.65 Aligned_cols=188 Identities=26% Similarity=0.364 Sum_probs=154.8
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC-------
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------- 256 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~------- 256 (382)
-|+++|++|+|++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997532 3599999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCC
Q 016798 257 ---------RLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPR 324 (382)
Q Consensus 257 ---------~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~ 324 (382)
+...+|++++||+|+| .+|+.|++||+.++......+.++..+. ..++++.+ |++ ....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCC
Confidence 3457788999999998 6899999999988642222333332211 12334443 453 345677
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tiii 231 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFV 231 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 89999999999999999999999999999999999999999999999875 4678764
No 84
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-42 Score=329.27 Aligned_cols=184 Identities=30% Similarity=0.493 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
-|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48899999999743 24599999999999999999999999999999999999999999999999999887877888899
Q ss_pred EEecCCCc--cccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|+|. ++..|++||+.++......+ .+++.++++.+++.++.+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 55679999998763222223 245677888888877766554 68999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tili 196 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVIS 196 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999864 678764
No 85
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=322.04 Aligned_cols=184 Identities=31% Similarity=0.415 Sum_probs=152.2
Q ss_pred cEEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---H
Q 016798 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~ 261 (382)
-++++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-cceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 R-RHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 r-~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
| +.++|++|++.+|+. |++||+.++......+ .+++.++++..++.++ ......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3 679999999999875 9999997632101111 2344555555555443 334457899999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 201 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLV 201 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999985 3678764
No 86
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-43 Score=318.46 Aligned_cols=179 Identities=38% Similarity=0.532 Sum_probs=150.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 468999999975 369999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|. .|++||+.++......+ .+++.++++..++.++.... ..+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999886 59999998653211111 23455666666666555443 368999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 186 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY 186 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999753 677764
No 87
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.1e-42 Score=319.42 Aligned_cols=182 Identities=27% Similarity=0.396 Sum_probs=151.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999975324699999999999999999999999999999999999999999999999998654 3567788999
Q ss_pred ecCCCccc-cccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLF-SGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+| ..|++||+.+.......+ .+++.++++..++.+.... ...+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-----------RARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------hhhhCCHHHHHHHHHHHHH
Confidence 99999998 569999997642111112 2344556666666544332 3468999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 187 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIIL 187 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999887777764
No 88
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.7e-42 Score=316.81 Aligned_cols=182 Identities=37% Similarity=0.558 Sum_probs=153.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH---HHHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~~ 264 (382)
|+++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999753 469999999999999999999999999999999999999999999999999977654 346788
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|++|++.+|+. |++||+.++......+ ++++.++++..++.++.+..| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999975 9999998642111111 234566777777766555443 68999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiii 191 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVV 191 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999985 4677764
No 89
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.9e-42 Score=318.12 Aligned_cols=183 Identities=33% Similarity=0.453 Sum_probs=150.3
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hh
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r 262 (382)
|+++||+++|++.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999997432 35999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -cceEEecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 263 -RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 263 -~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+.++|++|++.+|+ .|++||+.++......+ .+++.++++..++++.. ......||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 67999999999985 59999997632111111 22344555555554443 334478999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||++++|++|||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 197 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLV 197 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999998853 577764
No 90
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.8e-42 Score=317.64 Aligned_cols=182 Identities=30% Similarity=0.471 Sum_probs=152.6
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
|+++||+++|++.. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 67899999997532 169999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+|++|++.+|+. |++||+.+.......+ .+++.++++..++.+... ....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999985 9999997532111112 234555666666655443 345799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 191 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILF 191 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999853 678764
No 91
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.2e-42 Score=316.71 Aligned_cols=179 Identities=30% Similarity=0.403 Sum_probs=154.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..++++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999988654 456788999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+|. .|++||+.++......+++++.++++..++.+..... ...||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999999884 6999999765321123466777888888887765543 4689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 181 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999998764 677764
No 92
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-42 Score=320.93 Aligned_cols=182 Identities=37% Similarity=0.573 Sum_probs=155.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4889999999975 35999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|++|++.+|+.|++||+.++........+++.+.++..++. ++. .....+||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999875321112234555566666553 222 234578999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~ 187 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIW 187 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999998854 678764
No 93
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-42 Score=326.54 Aligned_cols=183 Identities=34% Similarity=0.482 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+..+++++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999743 35999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EecCCC--ccccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 267 LVSQDI--TLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 267 ~v~Q~~--~lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|++|+| .+|..|++||+.++......+ .+++.++++.+++.++..+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 578889999998763211122 245667788888877766655 589999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili 193 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIV 193 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999998854 678764
No 94
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-42 Score=316.16 Aligned_cols=179 Identities=32% Similarity=0.528 Sum_probs=153.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++|+|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 578999999965 36999999999999 99999999999999999999999999999999999987766 667889999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|.. |++||+.+.......+ .+++.++++..++.++.+. ...+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999997532111111 3456677777777665443 2368999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 184 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVIL 184 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999887777764
No 95
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-42 Score=336.80 Aligned_cols=181 Identities=31% Similarity=0.492 Sum_probs=157.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48899999999432 4699999999999999999999999999999999999999999999999999887654 47899
Q ss_pred EecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+ .|++||+.++......+ .+++.++++.+++.++.++.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 49999999864321222 245677888888888877766 6999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+++|++|+||||||+||..++..+.+.|+++.+ +.|+|.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 190 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLY 190 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999998865 567763
No 96
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.1e-42 Score=297.51 Aligned_cols=177 Identities=37% Similarity=0.513 Sum_probs=156.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|.+++|.|+|... + -.++++|++||++||+||||||||||+++++||..|.+|+|.+||+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~~--~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL--P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc--e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 5678999999753 2 368999999999999999999999999999999999999999999999877664 567999
Q ss_pred ecCCCccccc-cHHHHHcCCCC-C---CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDL-M---TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~-~---~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++||..||.- ||.+|+.+|.. . ...+.+.++.++..+|+..+.++|| .+||||||||+||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999966 99999999853 1 1223578889999999999999999 68999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+.|||+||||+|+||+.-+.++...+.++.. +.|+++
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm 185 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM 185 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 999999999999999999999999999888764 567764
No 97
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-42 Score=325.50 Aligned_cols=184 Identities=36% Similarity=0.513 Sum_probs=159.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-++++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754456999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EecCCC--ccccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 267 LVSQDI--TLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 267 ~v~Q~~--~lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|++|++ .+++.|++||+.++......+ .+++.++++.+++.+++...| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 456789999998753211122 244677788888877776665 589999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tili 196 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLS 196 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999875 577764
No 98
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-42 Score=309.90 Aligned_cols=183 Identities=33% Similarity=0.492 Sum_probs=157.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHh
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r 262 (382)
..|++++|+++|+++ .+++||||+|++||+++|+||||||||||+|+|.|+.+|++|+|.++|.++.+++.+ .+|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 469999999999754 699999999999999999999999999999999999999999999999999998765 458
Q ss_pred cceEEecCCCccccc-cHHHHHcCCC-CCCCCCHHHHH----HHHHHcChHHH-HHhCCCCcccccCCCCCCCChHHHHH
Q 016798 263 RHVGLVSQDITLFSG-TVAENIGYRD-LMTKIDMERVE----HTARTANADEF-VRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eNi~~~~-~~~~~~~~~~~----~~~~~~~l~~~-i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
+++|+++|+..||+. ||+||+.|-- .+...+++.++ ..++.+|+... .+.+| .+||||++.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 899999999999976 9999998742 22334444443 45667777666 55555 8999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|||||+..||+|+++|||||||||.+...+.+.|+++.+ +.|+|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~ 201 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM 201 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999999999988865 556653
No 99
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-42 Score=324.11 Aligned_cols=184 Identities=30% Similarity=0.503 Sum_probs=156.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999743456999999999999999999999999999999999999999999999999998777778889999
Q ss_pred EecCCCc--cccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 267 LVSQDIT--LFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 267 ~v~Q~~~--lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|++|+|. ++..|++||+.++......+.+ .+.++++..++.++.... ..+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHHH
Confidence 9999983 5567999999875321112222 345666777776665554 3799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii 198 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLIS 198 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999999999999999999864 367764
No 100
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-42 Score=335.71 Aligned_cols=183 Identities=34% Similarity=0.457 Sum_probs=153.0
Q ss_pred EEEEeEEEEeCC--CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hh
Q 016798 188 VKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (382)
Q Consensus 188 i~~~~v~f~y~~--~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r 262 (382)
|+++||+|+|+. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 689999999972 2346999999999999999999999999999999999999999999999999998876554 47
Q ss_pred cceEEecCCCcccc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
++++|++|++.+|. .|++||+.++......+. +++.+.++..++.++... ...+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-----------YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 88999999999986 599999986532111222 344555666655544433 44789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiil 196 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVL 196 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999864 577764
No 101
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-42 Score=320.18 Aligned_cols=182 Identities=36% Similarity=0.506 Sum_probs=151.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC---HHHHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r~~ 264 (382)
|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 36999999999999999999999999999999999999999999999999998776 4567888
Q ss_pred eEEecCCCcccc-ccHHHHHcCCCCC------------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 265 VGLVSQDITLFS-GTVAENIGYRDLM------------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eNi~~~~~~------------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
++|++|++.+|. .|++||+.++... .....+++.++++..++.++ ......+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCHH
Confidence 999999999886 5999999764311 00112334455555555433 34456899999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 200 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIV 200 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999999853 678764
No 102
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=5.1e-42 Score=319.78 Aligned_cols=182 Identities=37% Similarity=0.493 Sum_probs=150.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH---HHHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~~ 264 (382)
|+++||+++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 678999999972 2469999999999999999999999999999999999999999999999999877654 346788
Q ss_pred eEEecCCCcccc-ccHHHHHcCCCCCC------------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 265 VGLVSQDITLFS-GTVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eNi~~~~~~~------------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
++|++|++.+|. .|++||+.++.... ....+++.++++..++.++. .....+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHH
Confidence 999999999886 59999998653110 01123445555555554443 3455799999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 201 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVII 201 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999999998853 677764
No 103
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-42 Score=327.35 Aligned_cols=186 Identities=33% Similarity=0.508 Sum_probs=153.7
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC--HHHH
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~--~~~~ 261 (382)
.|+++||+|+|+... .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997532 36999999999999999999999999999999999999999999999999997653 3467
Q ss_pred hcceEEecCCC--ccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 RRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
+++++||+|+| .+|+.|++||+.++....+.+.+ ++.++++.+++. +.+........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 88999999998 57889999999875322223333 344555555553 0122344568999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~ 200 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIIL 200 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999864 678764
No 104
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.9e-42 Score=319.15 Aligned_cols=185 Identities=28% Similarity=0.424 Sum_probs=151.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 266 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999974 359999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCC----------CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKI----------DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~----------~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
|++|++.+|+. |++||+.++...... ..++. ...+.++++.+ |++.........||||||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-----RERAEELLERV--GLADLADRPAGELSYGQQRR 151 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-----HHHHHHHHHHc--CccchhhCChhhCCHHHHHH
Confidence 99999999986 999999875321110 01111 11123344443 45555566678999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 198 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLL 198 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999886 5678764
No 105
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.3e-42 Score=315.91 Aligned_cols=174 Identities=29% Similarity=0.456 Sum_probs=147.8
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++|++
T Consensus 2 ~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 2 VEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred cccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 6799999975 35999999999999999999999999999999999999999999999998764 4677899999
Q ss_pred CCCcc---ccccHHHHHcCCCCCC--------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 270 QDITL---FSGTVAENIGYRDLMT--------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 270 Q~~~l---f~~ti~eNi~~~~~~~--------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
|++.+ |+.|++||+.++.... ....+++.++++..++.++.... ..+||||||||++|
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 143 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVLL 143 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHH
Confidence 99986 5689999998753210 01234566777777777665443 36899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~ 187 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILV 187 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999976 5677764
No 106
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=320.39 Aligned_cols=186 Identities=32% Similarity=0.443 Sum_probs=158.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC---CCCceEEEcCEeCCCCCHHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~r~ 263 (382)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999975 369999999999999999999999999999999999985 68999999999998887778888
Q ss_pred ceEEecCCCccccccHHHHHcCCCCCCC------CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 264 HVGLVSQDITLFSGTVAENIGYRDLMTK------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
.++|++|++.+|+.|++||+.++..... ..++++.++++.+++.+++.. ...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHH
Confidence 9999999999999999999987531111 112345666777777554432 234566899999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 196 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIM 196 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999877888764
No 107
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-42 Score=315.43 Aligned_cols=178 Identities=35% Similarity=0.459 Sum_probs=149.8
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997521 369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+|++|++.+|+ .|++||+.++...... ..+++.++++..++.++....| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 5999999764211111 1345566777777766655544 689999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii 187 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL 187 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999998742 677764
No 108
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1e-41 Score=313.59 Aligned_cols=182 Identities=30% Similarity=0.437 Sum_probs=151.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r~~ 264 (382)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 6899999999532 46999999999999999999999999999999999999999999999999998765443 6788
Q ss_pred eEEecCCCccc-cccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLF-SGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|++|++.+| ..|++||+.++......+.+ ++.++++..++.++... ...+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHHH
Confidence 99999999975 56999999875211112222 34556666666655444 3478999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 192 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLM 192 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999998854 566653
No 109
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-42 Score=317.53 Aligned_cols=183 Identities=33% Similarity=0.443 Sum_probs=152.8
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHh
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r 262 (382)
|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68899999997531 2699999999999999999999999999999999999999999999999999876543 347
Q ss_pred cceEEecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+.++|++|++.+|. .|++||+.++......+ .+++.++++..++.++.+. ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 78999999999997 59999997642111112 2345566666666555444 34789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii 196 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVL 196 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999998863 677764
No 110
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-42 Score=318.35 Aligned_cols=180 Identities=37% Similarity=0.517 Sum_probs=150.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999975 369999999999999999999999999999999999999999999999999876543 356899
Q ss_pred EecCCCcccc-ccHHHHHcCCCCCCCC----C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITLFS-GTVAENIGYRDLMTKI----D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
|++|+|.+|. .|++||+.++...... + .+++.++++..++.++... ...+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----------YPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 9999999986 5999999875321111 1 1234555666666554443 34789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii 192 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVF 192 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999864 678774
No 111
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-42 Score=326.01 Aligned_cols=183 Identities=32% Similarity=0.436 Sum_probs=152.4
Q ss_pred EEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC----CCHHH
Q 016798 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~----~~~~~ 260 (382)
|+++||+|+|+... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999853 33557
Q ss_pred HhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHH
Q 016798 261 LRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 261 ~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
+|+.++||+|+| .+|+.|+.||+.++......+.+ ++.++++.+++. ++. ......||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW-----------EKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc-----------cCCcccCCHHHH
Confidence 788999999998 78999999999876422122332 344555555553 232 344579999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~ 199 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999998764 678774
No 112
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6.4e-42 Score=312.81 Aligned_cols=181 Identities=35% Similarity=0.491 Sum_probs=150.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC--CCHHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i 265 (382)
|+++||+++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 468999999975 369999999999999999999999999999999999999999999999999853 3445678899
Q ss_pred EEecCCCcccc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|++.+|+ .|++||+.++.. ....+. +++.++++..++.+++.. ...+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHHH
Confidence 99999999986 599999976521 111222 234455555555544443 4479999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|.
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~ 190 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVV 190 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999864 677763
No 113
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=8e-42 Score=312.27 Aligned_cols=179 Identities=34% Similarity=0.530 Sum_probs=150.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 468999999975 3699999999999999999999999999999999999999999999999998765432 467999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|. .|++||+.++......+ ++++.++++..++.++.+.. ..+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999985 59999998652111112 23445566677776655543 378999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 186 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIY 186 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999998863 678764
No 114
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-42 Score=333.77 Aligned_cols=180 Identities=34% Similarity=0.513 Sum_probs=156.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5899999999974 358999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. |++||+.|+......+ .+++.++++..++.++.++.| .+||||||||+|||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999999864211122 346667788888877665554 7899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+++|++|+||||||+||+.+...+.+.|+++.+ +.|+|.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 192 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY 192 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999998865 577763
No 115
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=8.7e-42 Score=313.89 Aligned_cols=182 Identities=29% Similarity=0.406 Sum_probs=148.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 266 (382)
|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999975 369999999999999999999999999999999999999999999999999987776554 56799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCC--CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKI--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|++|++.+|+. |++||+.++...... ..+++.++++.. . +++........+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~----~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------P----RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------H----hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999986 999999875432110 011222222222 1 1223334456789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
++|+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 187 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999886 4677764
No 116
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-42 Score=318.75 Aligned_cols=184 Identities=35% Similarity=0.516 Sum_probs=152.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 359999999999999999999999999999999999999999999999999988777778889999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|+ .|++||+.++......+ .+++.++++..++.+ +........+||||||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999996 59999997653211112 223344444444432 0123445689999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii 191 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVF 191 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999864 677764
No 117
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=318.79 Aligned_cols=187 Identities=35% Similarity=0.492 Sum_probs=155.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 258 (382)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 5 ~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 5 PKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred cEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 36999999999974 359999999999999999999999999999999999974 589999999999864 344
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++...... ..+++.++++.+++.+++. +.+.....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 5678899999999999989999999864211111 1345566677777654432 223455689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 203 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIII 203 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999877778764
No 118
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.2e-41 Score=307.79 Aligned_cols=180 Identities=25% Similarity=0.339 Sum_probs=153.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 468999999975 36999999999999999999999999999999999999999999999999987764 356788999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+|+ .|++||+.+........++++.++++..++.++.+.. ..+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLP-----------AAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCC-----------hhhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 5999999764321111234577788888887765432 3689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+++||||||++||..+.+.+.+.|+++. +++|+|+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 182 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLL 182 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999874 4667763
No 119
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=324.28 Aligned_cols=188 Identities=28% Similarity=0.474 Sum_probs=153.0
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHH
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~ 259 (382)
.|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997432 3699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHHHHHH
Q 016798 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq~Qri 336 (382)
.+|++|+||+|+| .+|+.|++||+.++......+.++..+. ..++++.+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6788999999998 5888899999987632222333332221 12233333 5543 33456789999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|||||+.+|+++||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~ 201 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL 201 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999985 3678774
No 120
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=306.12 Aligned_cols=183 Identities=35% Similarity=0.431 Sum_probs=153.7
Q ss_pred cEEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC-HHHHhc
Q 016798 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~ 263 (382)
.++++|+++.|+.+. .++++||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999998653 25999999999999999999999999999999999999999999999998876542 336678
Q ss_pred ceEEecCCCc--cc-cccHHHHHcCCCCCCC--CCHHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 264 HVGLVSQDIT--LF-SGTVAENIGYRDLMTK--IDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 264 ~i~~v~Q~~~--lf-~~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
.|-+|+|||+ += .-||++-|.-....+. ...+++.++++.+++. +|..+.| .+||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 8999999998 32 2388887753211111 2345688999999986 4666766 789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC--cee
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH--TVR 380 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~--TvI 380 (382)
|||||.-+|++||||||||+||...+.+|++.+.++.+++ |.|
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l 196 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYL 196 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEE
Confidence 9999999999999999999999999999999999998765 655
No 121
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=324.73 Aligned_cols=185 Identities=30% Similarity=0.416 Sum_probs=152.4
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC----CCHH
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~----~~~~ 259 (382)
.|+++|++|+|++.+ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 369999999999999999999999999999999999999999999999999863 3455
Q ss_pred HHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.++||+|+| .+|+.|++||+.++......+.+ .+.++++.+++.+. ........||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHH
Confidence 6778899999998 68888999999876322222332 34455555555321 12334579999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tvii 201 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVL 201 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999864 678764
No 122
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.7e-41 Score=313.32 Aligned_cols=184 Identities=29% Similarity=0.377 Sum_probs=154.8
Q ss_pred cEEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---H
Q 016798 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~ 261 (382)
-|+++|++++|+++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999997532 25899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hcceEEecCCCccccc-cHHHHHcCCCCCCC----CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 -RRHVGLVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 -r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
++.++|++|++.+|.. |++||+.++..... ...+++.++++..++.++....| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3579999999999875 99999975321111 12345667777878776665544 6899999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 202 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL 202 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999998853 567764
No 123
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2e-41 Score=300.11 Aligned_cols=150 Identities=47% Similarity=0.721 Sum_probs=140.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 46899999997544469999999999999999999999999999999999999999999999999988888888899999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+ ||||||||++||||++.+|+
T Consensus 81 ~~q~~~~~~~tv~~~l--------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 81 LPQDDELFSGSIAENI--------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred ECCCCccccCcHHHHC--------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999997 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 151 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV 151 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999998864 667764
No 124
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.2e-41 Score=318.29 Aligned_cols=185 Identities=36% Similarity=0.492 Sum_probs=154.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-----CceEEEcCEeCCCC--CHHH
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQNI--RLDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-----~G~i~~~g~~~~~~--~~~~ 260 (382)
|+++||+++|++. .+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998753 3456
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCC-CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
+++.++|++|++.+|+.|++||+.++..... .+ .+++.++++..++.+++. ..+.....+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 6789999999999999999999986421111 11 234556666666653221 12334557999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 198 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVI 198 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEE
Confidence 9999999999999999999999999999999999999877777764
No 125
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3e-41 Score=306.09 Aligned_cols=178 Identities=26% Similarity=0.367 Sum_probs=153.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 468999999975 35899999999999999999999999999999999999999999999999986543 457789999
Q ss_pred ecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.++ ..|++||+.+.... .+++++.++++..++.++... ...+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHAD--HSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred eccccccCCCcCHHHHHHhhccc--ccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 56999999876432 246677888888888755433 24689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 180 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVL 180 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999998754 677764
No 126
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=311.89 Aligned_cols=180 Identities=32% Similarity=0.450 Sum_probs=152.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999975 3699999999999999999999999999999999999999999999999988653 3566788999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|+. |++||+.+....... .++++.++++..++.++.+..| .+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999998875 999999763211111 1345667777777776654433 68999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 187 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999998764 567764
No 127
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.7e-41 Score=314.17 Aligned_cols=185 Identities=30% Similarity=0.453 Sum_probs=149.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 266 (382)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999974 359999999999999999999999999999999999999999999999999887765553 56799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|++|++.+|+. |++||+.++........++..+ .+.++++.+ |++........+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 9999998643211112211111 122333333 444444556689999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~ 188 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLI 188 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999998864 677764
No 128
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-41 Score=321.39 Aligned_cols=184 Identities=30% Similarity=0.437 Sum_probs=158.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC---ceEEEcCEeCCCCCHHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---GCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~~r~ 263 (382)
.|+++|++|+|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 589999999997543469999999999999999999999999999999999999987 89999999998777777788
Q ss_pred ceEEecCCCc--cccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 264 HVGLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 264 ~i~~v~Q~~~--lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+++|++|+|. +++.|++||+.++......+. +++.++++.+++.++....| .+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHH
Confidence 9999999984 567899999987532222333 34566777888877666555 799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli 199 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVIS 199 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999864 577764
No 129
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.6e-41 Score=332.00 Aligned_cols=180 Identities=33% Similarity=0.452 Sum_probs=154.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999975 3589999999999999999999999999999999999999999999999999877653 67899
Q ss_pred EecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+ .|++||+.|+......+ .+++.++++..++.++.++ ...+||||||||+|||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERK-----------YPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999996 59999999864221222 2345566666666555544 447999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+++|++++||||||+||..+...+.+.|+++.+ +.|+|.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~ 190 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIM 190 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999998764 567764
No 130
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.8e-41 Score=301.75 Aligned_cols=152 Identities=36% Similarity=0.558 Sum_probs=139.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999976434699999999999999999999999999999999999999999999999988665 5567889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+ ...||||||||++||||++++|+
T Consensus 80 ~~q~~~~~~~tv~~~i-----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 80 LNQRPYLFDTTLRNNL-----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EccCCeeecccHHHhh-----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999997 46899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 152 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIW 152 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999877777764
No 131
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=318.11 Aligned_cols=188 Identities=36% Similarity=0.481 Sum_probs=156.5
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CC
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IR 257 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~ 257 (382)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 456999999999974 369999999999999999999999999999999999986 589999999999853 35
Q ss_pred HHHHhcceEEecCCCccccccHHHHHcCCCCCC-CCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT-KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~-~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
...+|++++|++|++.+|+.|++||+.++.... ..+. +++.++++.+++.+.+ ...+.+...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 567788999999999999999999998753211 1222 3455666666654322 223455678999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii 210 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVI 210 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999999999999999999999999999877777764
No 132
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-41 Score=321.38 Aligned_cols=183 Identities=31% Similarity=0.454 Sum_probs=154.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC--CCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 264 (382)
-|+++|++|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999632 46999999999999999999999999999999999999999999999999984 3345677889
Q ss_pred eEEecCCC--ccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++|++|+| .+|+.|++||+.++......+. +.+.++++..++.++.+ ....+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHHH
Confidence 99999998 5788999999987532111222 34556667777665443 3468999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~till 197 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999998864 678764
No 133
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=318.97 Aligned_cols=188 Identities=34% Similarity=0.474 Sum_probs=157.0
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CC
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IR 257 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~ 257 (382)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 457999999999974 3699999999999999999999999999999999999975 89999999999864 34
Q ss_pred HHHHhcceEEecCCCccccccHHHHHcCCCCCCCC--C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI--D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~--~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
...+|+.++|++|++.+|+.|++||+.++...... + .+++.++++.+++.+++. ..+.....+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 55678899999999999988999999864211111 1 234566677777654332 2234556899999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiii 217 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVI 217 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999999877778764
No 134
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.9e-41 Score=308.13 Aligned_cols=179 Identities=30% Similarity=0.416 Sum_probs=148.1
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH----HHHhcce
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRRHV 265 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~i 265 (382)
++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999974 369999999999999999999999999999999999999999999999999764432 2356789
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+|++|++.+|+ .|++||+.++...... ..+++.++++..++.++.+ ....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999999997 5999999864211111 1334556666666654433 334789999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 189 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIII 189 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999998764 577764
No 135
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.9e-41 Score=309.86 Aligned_cols=183 Identities=30% Similarity=0.439 Sum_probs=153.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5899999999974 36999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EecCCCccccccHHHHHcCCCCC--CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLM--TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~--~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|++|++.+|+.|++||+.+.... ...+.+++.+.++..++.+ +.......+||||||||++||||+++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999763210 0112233444555554421 23345568999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii 193 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLW 193 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999853 567763
No 136
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.7e-41 Score=306.15 Aligned_cols=180 Identities=22% Similarity=0.320 Sum_probs=154.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 688999999975 35999999999999999999999999999999999999999999999999987654 356778999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCC-CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
++|++.+++ .|++||+.++..... .+++++.++++..++.++.+. ....||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999999886 599999986532211 235677788888888766543 2468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 184 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVIL 184 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999998753 567663
No 137
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-41 Score=317.67 Aligned_cols=187 Identities=33% Similarity=0.463 Sum_probs=155.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 258 (382)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 36999999999975 359999999999999999999999999999999999987 689999999999853 456
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCCC---HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
.++|+.++|++|++.+|+.|++||+.++....... ++++.++++.+++.+. ++..+.....+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHHH
Confidence 67788999999999999889999998764221111 2344555666555322 2233445668999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 208 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999877777764
No 138
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-41 Score=315.07 Aligned_cols=187 Identities=33% Similarity=0.439 Sum_probs=155.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 258 (382)
.-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 6 AIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred ceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 36999999999974 3599999999999999999999999999999999999997 48999999998853 344
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCC-CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++..... .+ ++.+.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 567889999999999998999999987532111 11 23455666666664333 223343 4679999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 204 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIII 204 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999977777764
No 139
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-41 Score=318.96 Aligned_cols=182 Identities=29% Similarity=0.476 Sum_probs=156.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++|++++|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 359999999999999999999999999999999999999999999999999987777778889999
Q ss_pred ecCCCc--cccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 268 VSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 268 v~Q~~~--lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
++|++. +|+.|++||+.++......+. +.+.++++.+++.++..+.| ..||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 999984 778899999986432112232 34567777777776665544 6899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli 193 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIF 193 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999998864 577764
No 140
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.6e-41 Score=310.22 Aligned_cols=187 Identities=33% Similarity=0.424 Sum_probs=147.8
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH---HHHh
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r 262 (382)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997531 269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cceEEecCCC--ccc-cccHHHHHcCCCCCC--CCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHHHH
Q 016798 263 RHVGLVSQDI--TLF-SGTVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 263 ~~i~~v~Q~~--~lf-~~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Qri 336 (382)
++++|++|++ .++ ..|++||+.++.... ...++....+. .++++.+ |+. ..+.....+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 469999997532111 11111111110 1223322 332 234455689999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 201 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999999864 678764
No 141
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.2e-41 Score=312.43 Aligned_cols=184 Identities=33% Similarity=0.484 Sum_probs=148.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 688999999974 35999999999999999999999999999999999999999999999999987766543 458999
Q ss_pred ecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+| ..|++||+.+.......+.++..+ .+.++++.+ |++........+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999885 679999997643211122221111 112233332 4444455566899999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii 188 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLW 188 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999986 3677764
No 142
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=323.30 Aligned_cols=184 Identities=28% Similarity=0.400 Sum_probs=151.6
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC--------
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-------- 255 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~-------- 255 (382)
.|+++||+|+|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999997532 259999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CCHHHHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChH-HHHHh
Q 016798 256 ----------------IRLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANAD-EFVRT 312 (382)
Q Consensus 256 ----------------~~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~-~~i~~ 312 (382)
.+...+|++|+||+|+| .+|..|++||+.++......+. +++.++++.+++. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-- 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL-- 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh--
Confidence 13456788999999986 5788899999988642222333 3345556666553 333
Q ss_pred CCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 313 lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
.....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 160 ---------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiii 220 (305)
T PRK13651 160 ---------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIIL 220 (305)
T ss_pred ---------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 344589999999999999999999999999999999999999999999998854 678764
No 143
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-41 Score=308.77 Aligned_cols=177 Identities=24% Similarity=0.442 Sum_probs=146.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 468999999974 359999999999999999999999999999999999999999999999988753 46778999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|.. |++||+.+.......+ .+++.+.++..++.+.. .....+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHH
Confidence 9999999875 9999997642111111 23344455555554433 344578999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~ 183 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVIL 183 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999998753 567764
No 144
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-41 Score=318.07 Aligned_cols=182 Identities=32% Similarity=0.485 Sum_probs=153.2
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC-HHHHhcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~ 266 (382)
|+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999643 35999999999999999999999999999999999999999999999999997765 356778899
Q ss_pred EecCCCc--cccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 267 LVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 267 ~v~Q~~~--lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|++|+|. +++.|++||+.++......+ .+++.++++..++.++... ....||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999985 56789999998753211122 2345556666666655444 34799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~ 191 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVY 191 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999998764 677764
No 145
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.8e-41 Score=333.32 Aligned_cols=182 Identities=34% Similarity=0.514 Sum_probs=159.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++..+++++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4889999999975 46999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EecCCCcc-ccccHHHHHcCCCCC--------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITL-FSGTVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~~~~--------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
||+|++.+ |+.|++||+.++... ...+.+.+.++++.+++.++.++ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999997 577999999876421 01124567788888888776644 34789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||+++|++|||||||++||+.+...+++.|+++. +++|+|+
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIi 194 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVA 194 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999986 4677764
No 146
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.8e-41 Score=330.00 Aligned_cols=181 Identities=36% Similarity=0.514 Sum_probs=157.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. ++.+
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999975 3589999999999999999999999999999999999999999999999999876654 5789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+||+|++.+|+. |++||+.|+......+ .+++.++++..++.++.++.| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999966 9999999864221222 235667788888888777766 689999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+++|++|+||||||+||..++..+.+.|+++.+ +.|+|.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~ 200 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF 200 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999864 567763
No 147
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-41 Score=320.31 Aligned_cols=185 Identities=30% Similarity=0.414 Sum_probs=150.7
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHH
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~ 259 (382)
.|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997532 3699999999999999999999999999999999999999999999999998754 345
Q ss_pred HHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.|+|++|++ .+|+.|++||+.++......+.++ +.++++..++.+ ........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 6788899999998 578889999998642111123322 233344444421 123445679999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 200 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVL 200 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999998864 677764
No 148
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-41 Score=314.74 Aligned_cols=176 Identities=32% Similarity=0.442 Sum_probs=151.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999975 36999999999999999999999999999999999999999999999998763 457889
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++|++.+|+ .|++||+.++.. ...++++.++++..++.++... ...+||||||||++||||+++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK--GQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIH 150 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc--chHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 599999987532 1124566677777777655443 347999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|+++||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tvii 189 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLL 189 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999874 3677764
No 149
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-41 Score=331.45 Aligned_cols=180 Identities=34% Similarity=0.528 Sum_probs=153.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 4899999999975 358999999999999999999999999999999999999999999999999987654 356899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. |++||+.++......+ .+++.++++..++.++.++.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999998763211122 235566777777766655544 6899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~ 189 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 9999999999999999999999999999998754 677764
No 150
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.1e-41 Score=329.21 Aligned_cols=180 Identities=33% Similarity=0.495 Sum_probs=154.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 4889999999975 359999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EecCCCccccc-cHHHHHcCCCCC----CCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLM----TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
||+|++.+|+. |++||+.++... ...+ .+++.++++.+++.++.++.| .+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 999999986321 0112 245566777777766655544 799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~ 192 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF 192 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999865 567763
No 151
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-41 Score=317.40 Aligned_cols=182 Identities=35% Similarity=0.438 Sum_probs=157.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999974 36999999999999999999999999999999999999999999999999998878788888999
Q ss_pred EecCCCccccc-cHHHHHcCCCCC--------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~--------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
|++|++.+|.. |+.||+.++... ....++++.++++.+++.+++...| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999887655 999999865310 0112345677788888876665544 589999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii 203 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999853 577764
No 152
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-41 Score=305.31 Aligned_cols=177 Identities=34% Similarity=0.488 Sum_probs=151.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4689999999742 2 39999999999999999999999999999999999999999999999876654 3578999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCC-C---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMT-K---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~-~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|+. |++||+.++.... . .+++++.++++.+++.++....| .+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999976 9999998653210 1 12446777888888877766655 58999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+.+|+++||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 184 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM 184 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999863 677764
No 153
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.3e-41 Score=303.26 Aligned_cols=179 Identities=25% Similarity=0.362 Sum_probs=149.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 688999999975 359999999999999999999999999999999999999999999999998864 34567889999
Q ss_pred ecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.++ ..|++||+.++... ...+..+.++++..++.++. + ....+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHF-SPGAVGITELCRLFSLEHLI-------D----YPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhc-CcchHHHHHHHHHcCCchhh-------h----CChhhcCHHHHHHHHHHHHHhcCC
Confidence 99999987 46999999875311 11233455555555554332 2 223579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 182 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLL 182 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999874 4667663
No 154
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-41 Score=315.32 Aligned_cols=181 Identities=32% Similarity=0.466 Sum_probs=155.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+..++++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999974 369999999999999999999999999999999999999999999999999988777788888999
Q ss_pred ecCCCccccc-cHHHHHcCCCCC--------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 268 VSQDITLFSG-TVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~--------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++|++.+|.+ |++||+.++... .....+++.++++..++.++.+. ....||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHHH
Confidence 9999998876 999999875210 01123355667777777655543 347899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii 193 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVT 193 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999998754 678764
No 155
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.5e-40 Score=314.32 Aligned_cols=198 Identities=27% Similarity=0.404 Sum_probs=166.2
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+.+++..+++.. ++.+.+...+.|+++|+++. . .++|+|+||+|++||+++|+|+||||||||+++|+|+++
T Consensus 16 ~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 16 GFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred HHHHHHhcccccc---cccccCCCCCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4555665544321 12222334567999999985 2 359999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|+|.++| .++|++|++.+|+.|++||+.++.. ....++.++++.+++.+++..+|.++++.
T Consensus 89 p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~---~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 152 (282)
T cd03291 89 PSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS---YDEYRYKSVVKACQLEEDITKFPEKDNTV 152 (282)
T ss_pred CCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc---cCHHHHHHHHHHhCCHHHHHhccccccce
Confidence 9999999988 3999999999999999999987642 23445567778889999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~TvI~ 381 (382)
+++.+..||||||||++||||++++|+++||||||++||+.+...+.+.+ +++.+++|+|+
T Consensus 153 ~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIii 214 (282)
T cd03291 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRIL 214 (282)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999998754 56666777764
No 156
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.3e-41 Score=310.47 Aligned_cols=182 Identities=28% Similarity=0.387 Sum_probs=149.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-HhcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~ 266 (382)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 478999999975 36999999999999999999999999999999999999999999999999998776654 466899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCH-HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM-ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|++|++.+|+. |++||+.++........ +...++++..+ +++........+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999976 99999986532111111 12233333322 12233344567899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 187 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILL 187 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 9999999999999999999999999999864 578764
No 157
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-41 Score=317.77 Aligned_cols=184 Identities=29% Similarity=0.429 Sum_probs=156.9
Q ss_pred cEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
-|+++||+++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48899999999743 23589999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEecCCCc--cccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|+|. ++..|+.||+.++......+. +++..+++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999984 667899999986532111222 3446677777777665543 378999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil 196 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLS 196 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999998865 677764
No 158
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-41 Score=316.32 Aligned_cols=184 Identities=30% Similarity=0.468 Sum_probs=154.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754346899999999999999999999999999999999999999999999999998888788889999
Q ss_pred EecCCCc--cccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 267 LVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 267 ~v~Q~~~--lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|++|+|. ++..|+++|+.++......+. +++.++++..++.++.+. ...+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999995 445689999987532111222 344556666666554433 34789999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiii 198 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS 198 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999864 567763
No 159
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.7e-41 Score=330.15 Aligned_cols=181 Identities=34% Similarity=0.502 Sum_probs=155.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC--ceEEEcCEeCCCCCHHHHhc
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS--GCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~--G~i~~~g~~~~~~~~~~~r~ 263 (382)
+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .++
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 57999999999975 359999999999999999999999999999999999999999 999999999987655 367
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
.|+||+|++.+|+. |++||+.|+......+. +++.++++.+++.++.++.| .+||||||||+||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaL 148 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAI 148 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHH
Confidence 89999999999976 99999987632112232 34566677777766666555 6999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC---CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG---HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~---~~TvI~ 381 (382)
||||+.+|++|+||||||+||+.+...+.+.|+++.+ +.|+|+
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~ 194 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILC 194 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999999999999999999998765 467763
No 160
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=315.64 Aligned_cols=186 Identities=31% Similarity=0.424 Sum_probs=154.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCCCHHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~~~ 261 (382)
.|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4889999999975 3599999999999999999999999999999999999974 69999999999988777788
Q ss_pred hcceEEecCCCccc-cccHHHHHcCCCCCCC--CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 262 RRHVGLVSQDITLF-SGTVAENIGYRDLMTK--ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 262 r~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~--~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
|+.++|++|++.+| ..|++||+.++..... .+ .+++.++++.+++.+.+. ........+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHH
Confidence 88999999999865 5699999976431111 01 234566677766644322 1223445789999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 200 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVL 200 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999877777764
No 161
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.6e-41 Score=330.58 Aligned_cols=169 Identities=30% Similarity=0.465 Sum_probs=148.0
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH----hcceEEecCCCccccc
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRHVGLVSQDITLFSG 277 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~ 277 (382)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++ |++++||+|++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999888877 7899999999999975
Q ss_pred -cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEe
Q 016798 278 -TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352 (382)
Q Consensus 278 -ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililD 352 (382)
|++||+.++......+ .+++.++++.+++.++..+.| .+||||||||++|||||+.+|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999998764322222 345667777777776665554 689999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 353 EATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||+||+.+...+++.+.++.+ ++|+|+
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~ 185 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVF 185 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999998753 688874
No 162
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.5e-41 Score=323.54 Aligned_cols=182 Identities=32% Similarity=0.473 Sum_probs=151.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 36999999999974 46999999999999999999999999999999999999999999999999997654 4578899
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
||+||++.+|. .|++||+.+.......+.. ++.++++.+++.+ ..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 5999999753221122222 3334444444433 334443 589999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till 193 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILL 193 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999864 677764
No 163
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-41 Score=319.40 Aligned_cols=180 Identities=31% Similarity=0.471 Sum_probs=151.5
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH----hcc
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRH 264 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~ 264 (382)
.++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 45688888864 358999999999999999999999999999999999999999999999999987765443 457
Q ss_pred eEEecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|++|++.+|+ .|++||+.++...... .++++.++++.+++.+++...| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999985 5999999764211111 1345667778888877766655 58999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 216 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF 216 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999998853 678764
No 164
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.6e-41 Score=312.34 Aligned_cols=181 Identities=34% Similarity=0.451 Sum_probs=150.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC--CHHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--RLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~--~~~~~r~~i 265 (382)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999974 3699999999999999999999999999999999999999999999999998764 335678889
Q ss_pred EEecCCCcccc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|++.+|. .|++||+.++.. ....+. +++.++++..++.+.. ......||||||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHHH
Confidence 99999999886 599999986521 111122 2334455555554443 334579999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 191 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVI 191 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999998864 677764
No 165
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-41 Score=319.41 Aligned_cols=187 Identities=27% Similarity=0.406 Sum_probs=150.6
Q ss_pred CCcEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC----C-
Q 016798 185 NGDVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----I- 256 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~----~- 256 (382)
.+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 45799999999997542 259999999999999999999999999999999999999999999999999852 1
Q ss_pred CHHHHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 257 RLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 257 ~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
+...+|+.++|++|+| .+|+.|++||+.++........++ +.+.++..++ |. .........|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~---~~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PE---DYVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Ch---hHhcCChhhCCH
Confidence 3456788999999998 467889999998753211122222 2233333333 11 123345689999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 206 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIM 206 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999998863 677764
No 166
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=313.09 Aligned_cols=181 Identities=29% Similarity=0.381 Sum_probs=154.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999975 359999999999999999999999999999999999999999999999999988777777889999
Q ss_pred ecCCCcc-ccccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITL-FSGTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~l-f~~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+ +..|++||+.++...... .++.+.++++..++.++.+. ....||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 9999987 567999999875321111 12345666777777655443 3479999999999999999
Q ss_pred c------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 343 Y------QNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 343 l------~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+ .+|+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 196 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIV 196 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9 5999999999999999999999999999886 3677764
No 167
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-41 Score=312.52 Aligned_cols=187 Identities=36% Similarity=0.512 Sum_probs=154.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 258 (382)
+.|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+ .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 36899999999975 3599999999999999999999999999999999999863 68999999999864 345
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++...... .++++.++++.+++.+.+. ..+.....+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 5678899999999999999999999875321111 1234455566666543332 223455689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 200 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVI 200 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999877778764
No 168
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.1e-41 Score=311.23 Aligned_cols=181 Identities=27% Similarity=0.393 Sum_probs=151.2
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 266 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999975 359999999999999999999999999999999999999999999999999887766543 45799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCC--------C----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTK--------I----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~--------~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
|++|++.+|++ |++||+.++..... . .++++.++++.. |++.........||||||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHH
Confidence 99999999987 99999987532100 0 112333344443 344344455689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 197 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVV 197 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999877788774
No 169
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=7.6e-41 Score=313.72 Aligned_cols=181 Identities=35% Similarity=0.486 Sum_probs=150.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----------
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---------- 257 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---------- 257 (382)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999974 36999999999999999999999999999999999999999999999999987543
Q ss_pred ---HHHHhcceEEecCCCcccc-ccHHHHHcCCCC-CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCC
Q 016798 258 ---LDSLRRHVGLVSQDITLFS-GTVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (382)
Q Consensus 258 ---~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~l 328 (382)
...+|+.++|++|++.+|. .|++||+.++.. ..... ++++.++++..++.++... ...+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhhc
Confidence 2356788999999999885 699999986421 00111 2344555666666554443 44789
Q ss_pred ChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 329 SgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||||++||||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii 202 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLL 202 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999999999999999999999999999998764 567764
No 170
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=311.49 Aligned_cols=186 Identities=33% Similarity=0.500 Sum_probs=154.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-----CceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-----~G~i~~~g~~~~~~--~~~ 259 (382)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999974 35999999999999999999999999999999999999997 69999999998643 345
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCC-----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~-----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+|+.++|++|++.+|+.|++||+.++....... ++.+.++++..++.+++. ........+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHHH
Confidence 6788999999999999999999998753211111 123444555555544332 3345677899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tili 201 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAI 201 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999876778764
No 171
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=6e-41 Score=317.38 Aligned_cols=182 Identities=25% Similarity=0.365 Sum_probs=151.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 263 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999974 3699999999999999999999999999999999999999999999999998776543 3467
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCC-CCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+++|++|++.+|+. |++||+.++... ...+. +.+.+.++..++.+.... ...+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999986 999999764210 01122 234445565555444333 34789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 199 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVV 199 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999999999999999999999854 577764
No 172
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-41 Score=311.30 Aligned_cols=182 Identities=31% Similarity=0.429 Sum_probs=148.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC------CCCHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ------NIRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~------~~~~~~ 260 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999975 36999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCC-CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
+|++++|++|++.+|+. |++||+.++.. ..... .+++.+.++..++.+++. ....+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHH
Confidence 78899999999999975 99999964210 00111 123344455555544443 344799999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++||||++++|+++||||||++||+++...+.+.|+++.+ ++|+|.
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 196 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVI 196 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999998864 677763
No 173
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=7.1e-41 Score=307.72 Aligned_cols=183 Identities=32% Similarity=0.439 Sum_probs=153.7
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHh
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r 262 (382)
++++|+++.|++++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999997532 4699999999999999999999999999999999999999999999999998776543 467
Q ss_pred cceEEecCCCcccc-ccHHHHHcCCCCCC-CCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 263 RHVGLVSQDITLFS-GTVAENIGYRDLMT-KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~-~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+.++|++|++.+|. .|+.||+.++.... ..+. +++.++++.+++.++++..| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 88999999999997 69999998643211 1222 24556666666665555544 68999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||++++|+++||||||++||+++...+.+.|+++.+ ++|+|+
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 197 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI 197 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999998864 678764
No 174
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=316.69 Aligned_cols=184 Identities=33% Similarity=0.477 Sum_probs=156.8
Q ss_pred cEEEEeEEEEeCCC----CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC-HHHH
Q 016798 187 DVKFCNISFKYADN----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~----~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~ 261 (382)
-|+++|++++|++. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48899999999743 246999999999999999999999999999999999999999999999999987643 3557
Q ss_pred hcceEEecCCCc--cccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 RRHVGLVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 r~~i~~v~Q~~~--lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
|+.++|++|+|. +|..|+.||+.++......+ ++++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 889999999984 67779999998763211122 345667788888877776654 7999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|||||+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~till 200 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIIL 200 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999853 677764
No 175
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=7.8e-41 Score=300.59 Aligned_cols=169 Identities=35% Similarity=0.474 Sum_probs=141.0
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC--CCHHHHhcceEEecCCC--ccccc
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHVGLVSQDI--TLFSG 277 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~--~lf~~ 277 (382)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|++|+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23346678899999998 47888
Q ss_pred cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeC
Q 016798 278 TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353 (382)
Q Consensus 278 ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDE 353 (382)
|++||+.++......+. +++.++++..++.++.+.. ..+||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP-----------THCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987421111222 3455667777776655443 36899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 354 ATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 354 pts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili 182 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVI 182 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999998864 567763
No 176
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=314.77 Aligned_cols=189 Identities=30% Similarity=0.429 Sum_probs=157.1
Q ss_pred CCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--C
Q 016798 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--I 256 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~ 256 (382)
....|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 17 ~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 17 EEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 3447999999999964 469999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 257 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
+...+|+.++|++|++.+|..|++||+.++...... + ++++.++++..++.+.+ ++.+.....+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHH
Confidence 455678899999999999999999999875321111 1 23445566666664433 23345667899999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||++||||++++|+++||||||++||+.+...+.+.|+++.++.|+|+
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 217 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIII 217 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999999877777764
No 177
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=312.42 Aligned_cols=188 Identities=26% Similarity=0.420 Sum_probs=150.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 265 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999974 369999999999999999999999999999999999999999999999999988776554 4469
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC-------C------CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT-------K------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~-------~------~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
+|++|++.+|+. |++||+.++.... . ...++ .+ ......++++.+ |++........+||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SE--ALDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hH--HHHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 999999999976 9999998752100 0 00000 00 001122333333 4444555667899999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~ 209 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLL 209 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 99999999999999999999999999999999999999998864 567764
No 178
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-41 Score=314.77 Aligned_cols=186 Identities=30% Similarity=0.417 Sum_probs=153.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCC--CCCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQ--NIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~--~~~~~ 259 (382)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999975 3599999999999999999999999999999999999987 4999999999986 44555
Q ss_pred HHhcceEEecCCCccccc-cHHHHHcCCCCCCCC--C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI--D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~--~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
.+|++++|++|++.+|+. |++||+.++...... + ++++.++++..++.+.+. ........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHHH
Confidence 678899999999999976 999999864211110 1 234455566665543221 22345568999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 203 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVL 203 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999999999999999877778764
No 179
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-40 Score=294.33 Aligned_cols=150 Identities=55% Similarity=0.835 Sum_probs=139.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++....+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999997643369999999999999999999999999999999999999999999999999988877788889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+ ||||||||++||||++.+|+
T Consensus 81 ~~~~~~~~~~t~~e~l--------------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 81 VPQDPFLFSGTIRENI--------------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred EcCCchhccchHHHHh--------------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999997 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~ 150 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIV 150 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999877777764
No 180
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1e-40 Score=320.96 Aligned_cols=181 Identities=31% Similarity=0.432 Sum_probs=148.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999975 3599999999999999999999999999999999999999999999999998653 345688999
Q ss_pred EecCCCcccc-ccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFS-GTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|++|++.+|. .|++||+.+.......+.+ ++.++++.+++.+.. ++ ....||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-------~~----~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-------DV----RVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-------cC----chhhCCHHHHHHHHHHHH
Confidence 9999999885 5999999742211112222 233444445443332 32 346899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~ 190 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 190 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999854 677764
No 181
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=314.57 Aligned_cols=183 Identities=30% Similarity=0.403 Sum_probs=156.6
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 36999999999975 3599999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEecCCCcccc-ccHHHHHcCCC-CCC-------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRD-LMT-------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~-~~~-------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+|++|++.+|. .|++||+.++. +.. ...++++.++++..++.++... ....||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999999875 59999998652 110 1112355667777777665443 4579999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii 199 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAA 199 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999864 567764
No 182
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-40 Score=312.11 Aligned_cols=181 Identities=35% Similarity=0.474 Sum_probs=148.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC--------HH
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--------LD 259 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~--------~~ 259 (382)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 889999999974 35999999999999999999999999999999999999999999999999986532 24
Q ss_pred HHhcceEEecCCCcccc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDITLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.++|++|++.+|+ .|++||+.++.. ...... +.+.++++..+ ++........+||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~Gq~ 150 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVG-----------LAGKETSYPRRLSGGQQ 150 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CcchhhCChhhCChHHH
Confidence 56788999999999886 599999976421 011122 22333344433 33334455689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~ 199 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVI 199 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999998864 677764
No 183
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=317.19 Aligned_cols=185 Identities=29% Similarity=0.395 Sum_probs=149.9
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHH
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~ 259 (382)
.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997421 3699999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..++.++|++|+| .+|+.|++||+.++......+.+ .+.++++.+++.+ ........+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 6677899999998 57888999999864321112222 2344444444421 122344679999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvli 200 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVIL 200 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999853 677764
No 184
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=9.8e-41 Score=320.75 Aligned_cols=180 Identities=26% Similarity=0.412 Sum_probs=152.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999974 469999999999999999999999999999999999999999999999999876 34567889999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+||++.+|+. |++||+.+.......+ .+++.++++..++.++ .......||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-----------QHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCchhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999997532111112 2344455555555443 3444579999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 187 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIIL 187 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999999977778764
No 185
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.2e-40 Score=302.96 Aligned_cols=177 Identities=34% Similarity=0.527 Sum_probs=151.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 468999999999999999999999999999999999999999999999987543 35778999
Q ss_pred ecCCCccccc-cHHHHHcCCC-CCC---CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRD-LMT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~-~~~---~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|+|.+|.. |++||+.++. +.. ...++++.++++..++.+...+.| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 9999997642 111 112346677888888887776665 58999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~ 184 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999863 567764
No 186
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=314.32 Aligned_cols=181 Identities=29% Similarity=0.397 Sum_probs=150.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC--CCCHHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~i 265 (382)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999974 36999999999999999999999999999999999999999999999999985 23445678889
Q ss_pred EEecCCCc--cccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|++. +|..|+.||+.++......+. +++.++++..++.++... ...+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHHH
Confidence 99999986 567789999976421111222 234556666666554432 3478999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||++.+|+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 191 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVII 191 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999986 3677764
No 187
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=308.18 Aligned_cols=182 Identities=30% Similarity=0.407 Sum_probs=148.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-Hhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 265 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999974 36999999999999999999999999999999999999999999999999998877654 57789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCC--CHHHHHHHHHHc-ChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKI--DMERVEHTARTA-NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~--~~~~~~~~~~~~-~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
+|++|++.+|+. |++||+.++...... ..+++.++++.. ++.+ ........||||||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999975 999999875321110 011222222222 1211 1223457899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 192 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL 192 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999998754 678764
No 188
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.1e-40 Score=301.90 Aligned_cols=178 Identities=25% Similarity=0.361 Sum_probs=150.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . .++++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999975 358999999999999999999999999999999999999999999999998752 2 27888999
Q ss_pred ecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.++ ..|++||+.+........++++.++++..++.++.+.. ...||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLP-----------FGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCC-----------hhhcCHHHHHHHHHHHHHhcCC
Confidence 99988876 56999999764321123355677888888887654332 2589999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 182 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIA 182 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999864 4577663
No 189
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=311.50 Aligned_cols=186 Identities=33% Similarity=0.464 Sum_probs=153.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC--C---CCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--~---~~G~i~~~g~~~~~--~~~~ 259 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999975 359999999999999999999999999999999999997 3 58999999999864 3445
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCC-CCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-IDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+|+.++|++|++.+|+.|++||+.++..... .++ +++.++++..++.+++. ..+.....+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHH
Confidence 67889999999999998999999987532111 122 23444555666544332 2334566899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 209 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVI 209 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999877778764
No 190
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-40 Score=310.43 Aligned_cols=176 Identities=28% Similarity=0.415 Sum_probs=147.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 689999999975 3699999999999999999999999999999999999999999999999988642 346899
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|+ .|++||+.++......+ .+++.++++..++.+.... ...+||||||||++||||+
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999987 59999998642111112 2345556666666544433 4578999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii 184 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL 184 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999874 3678764
No 191
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-40 Score=318.55 Aligned_cols=182 Identities=34% Similarity=0.480 Sum_probs=156.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++||+.+|+. ...+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.+...- ..+.|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999983 23699999999999999999999999999999999999999999999999998764 667899999
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCC----CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|+||+|.+++. |++||+.|...... ..++++.++++..++.+.. ......||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999998866 99999976422111 2356788888888886522 22357899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC--Cceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~TvI~ 381 (382)
|+.+|+++||||||+|||+.+...+.+.|+++.++ +|+++
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvli 192 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILL 192 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 99999999999999999999999999999999864 57764
No 192
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-40 Score=314.40 Aligned_cols=182 Identities=30% Similarity=0.470 Sum_probs=151.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC--CCHHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i 265 (382)
|+++||+++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999743 359999999999999999999999999999999999999999999999999852 2344678899
Q ss_pred EEecCCC--ccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|++ .+|+.|++||+.++......+. +++.++++.+++.++.+. ...+|||||+||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-----------PPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 4788899999986532111222 345566666666544333 3468999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~ 192 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIII 192 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999864 677764
No 193
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=307.98 Aligned_cols=186 Identities=28% Similarity=0.465 Sum_probs=151.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-Hhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 265 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3789999999974 36999999999999999999999999999999999999999999999999998776544 56789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC-CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
+|++|++.+|.. |++||+.+..... ..+.++.. ..+.++++.+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999999875 9999998643111 11221111 1122334433 4444445566899999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
.+|++|||||||++||+.+...+.+.++++.+ ++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 192 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI 192 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999988764 678764
No 194
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=311.42 Aligned_cols=186 Identities=32% Similarity=0.438 Sum_probs=155.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~~ 259 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5899999999974 369999999999999999999999999999999999986 379999999998853 3456
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC---CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~---~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
.++++++|++|++.+|+.|++||+.++...... .++++.++++.+++.+++.. .......+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHH
Confidence 678899999999999988999999875321111 12345556677777554432 23456789999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~ 205 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIII 205 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999887778764
No 195
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=312.64 Aligned_cols=187 Identities=35% Similarity=0.482 Sum_probs=155.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 258 (382)
+.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 46999999999974 3599999999999999999999999999999999999984 89999999999864 345
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++...... . ++++.++++.+++.+.+. +.++..+..||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHHH
Confidence 5678899999999999988999999865211111 1 233555666666644332 234566789999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|.
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiii 222 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVI 222 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 999999999999999999999999999999999999999877777763
No 196
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=310.70 Aligned_cols=186 Identities=31% Similarity=0.425 Sum_probs=154.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~~ 259 (382)
-|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+. +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999974 3699999999999999999999999999999999999763 489999999998765 445
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
..++.++|++|++.+|+.|++||+.++...... + ++.+.++++.+++.+. +.+.+...+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHHH
Confidence 677889999999999999999999875321111 1 2234455555554332 223456677899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii 203 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVII 203 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEE
Confidence 99999999999999999999999999999999999999877778764
No 197
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=311.97 Aligned_cols=186 Identities=31% Similarity=0.406 Sum_probs=152.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~~ 259 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5899999999974 369999999999999999999999999999999999864 789999999999864 3344
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.++++++|++|++.+|++|++||+.++...... .++.+.++++..++.+.+ .........+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHHH
Confidence 678889999999999999999999864211111 123344555555543211 12234556899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 218 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIII 218 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999877778764
No 198
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=310.94 Aligned_cols=186 Identities=31% Similarity=0.447 Sum_probs=152.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCCC--HH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIR--LD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~~--~~ 259 (382)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999974 3599999999999999999999999999999999999985 7999999999986532 34
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
.+|+.++|++|++.+|+.|++||+.++......+. +++.++++.+++.+++ ..........||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence 56788999999999999999999986421111222 2344556665553221 122344567999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiii 208 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVI 208 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999999999999877778764
No 199
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-40 Score=324.73 Aligned_cols=181 Identities=32% Similarity=0.475 Sum_probs=154.3
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.+
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999974 358999999999999999999999999999999999999999999999999987654 47789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+||+|++.+|+. |++||+.|+......+ .+++.++++..++.++.++.| .+||||||||+||||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 9999999864211222 234556677777766655544 689999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+++|++|+||||||+||..+...+.+.|+++.+ +.|+|.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 205 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999988887753 567663
No 200
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=308.87 Aligned_cols=187 Identities=30% Similarity=0.456 Sum_probs=154.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC--C---CCceEEEcCEeCCCC--CH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQNI--RL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--~---~~G~i~~~g~~~~~~--~~ 258 (382)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 46899999999974 369999999999999999999999999999999999986 4 689999999998643 34
Q ss_pred HHHhcceEEecCCCcccc-ccHHHHHcCCCCCCC-CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 259 DSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~-~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
..+|+.++|++|++.+|. .|++||+.++..... .+ ++++.++++..++.+++.. .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHHH
Confidence 467889999999999997 599999976421111 11 2345566666666544322 2234568999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii 202 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIII 202 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEE
Confidence 9999999999999999999999999999999999999999987778764
No 201
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-41 Score=285.53 Aligned_cols=175 Identities=30% Similarity=0.480 Sum_probs=150.8
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++++- |...+.++|+|+||++.+||+++|+||||||||||+|.++-+.+|++|++++.|.+++.++++.+|++|+||
T Consensus 5 e~kq~~--y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 5 ELKQVG--YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred HHHHHH--hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 344543 433445799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccHHHHHcCCCC--CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 269 SQDITLFSGTVAENIGYRDL--MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 269 ~Q~~~lf~~ti~eNi~~~~~--~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
.|.|.||.+||.||+.|--. ....+.....+.++.+++.+.+ +..+..+||||||||+||+|-|---|
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCC
Confidence 99999999999999986311 1123455556666666665544 45567899999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
+||+||||||+||..+.+.|.+.|.++..
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~ 181 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVR 181 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhh
Confidence 99999999999999999999999988873
No 202
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=313.00 Aligned_cols=186 Identities=34% Similarity=0.476 Sum_probs=152.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~~ 259 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 24 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 5999999999975 359999999999999999999999999999999999997 699999999999853 3455
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCCH-----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM-----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~-----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+++.++|++|++.+|..|++||+.++......++ +.+.++++..++.+ ++...+...+..|||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHHH
Confidence 67889999999999998999999986421111111 12233344443321 2233345567899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 221 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIII 221 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999999987777764
No 203
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=313.90 Aligned_cols=187 Identities=31% Similarity=0.467 Sum_probs=155.2
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 258 (382)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35999999999975 369999999999999999999999999999999999997 689999999999864 345
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC---CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~---~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
..+++.++|++|++.+|+.|++||+.++...... .++++.++++..++.+.+. ..+.....+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHHH
Confidence 5678899999999999988999999764211111 2345566666666543322 12345568999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||++++|++|||||||++||..+.+.+.+.|+++.+++|+|+
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii 234 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVI 234 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999977777764
No 204
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=311.48 Aligned_cols=184 Identities=32% Similarity=0.441 Sum_probs=151.2
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC---------
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--------- 256 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~--------- 256 (382)
+.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 46999999999975 3599999999999999999999999999999999999999999999999988542
Q ss_pred ----CHHHHhcceEEecCCCccccc-cHHHHHcCCCC-CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCC
Q 016798 257 ----RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS 326 (382)
Q Consensus 257 ----~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~ 326 (382)
....+++.++|++|++.+|+. |++||+.++.. ....+ .+++.++++..++.++. ......
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcc
Confidence 134667889999999999975 99999976320 00112 23344555555554432 134567
Q ss_pred CCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
.||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiii 207 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV 207 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999999999999864 677764
No 205
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.2e-40 Score=310.22 Aligned_cols=181 Identities=30% Similarity=0.435 Sum_probs=153.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 688999999975 369999999999999999999999999999999999999999999999999988887777888999
Q ss_pred ecCCCcc-ccccHHHHHcCCCC-CC-------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 268 VSQDITL-FSGTVAENIGYRDL-MT-------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 268 v~Q~~~l-f~~ti~eNi~~~~~-~~-------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++|++.+ +..|++||+.++.. .. ....+++.++++.+++.++... ....||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 9999965 46799999987531 00 0112345566666666554433 457899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||++.+|+++||||||++||+.+...+.+.|+++.+ +.|+|+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 192 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVA 192 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999864 567664
No 206
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=309.96 Aligned_cols=186 Identities=34% Similarity=0.487 Sum_probs=152.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC---CCC--CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL---YDP--LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~---~~~--~~G~i~~~g~~~~~~--~~~ 259 (382)
.|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5889999999975 3599999999999999999999999999999999997 454 589999999998754 345
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+|++++|++|++.+|+.|++||+.++...... .++++.++++.+++.+++ ++.+.....+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 678889999999999988999999864211111 123345555555554332 22344567899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 200 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVI 200 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999877778764
No 207
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=308.32 Aligned_cols=186 Identities=35% Similarity=0.475 Sum_probs=154.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCC-CCCHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQ-NIRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~-~~~~~~ 260 (382)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999974 3699999999999999999999999999999999999986 5999999999985 345667
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCCCC-----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~-----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
+|+.++|++|++.+|+.|++||+.++....... ++++.++++.+++.+.+ ...+.....+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence 788999999999999999999998653211111 12344555566654433 223445567999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 199 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVI 199 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999999999999999999999999977777764
No 208
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-40 Score=293.65 Aligned_cols=151 Identities=48% Similarity=0.689 Sum_probs=137.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC--HHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~i 265 (382)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+++++
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 468999999975 36999999999999999999999999999999999999999999999999998775 56678899
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++|+|.+|.. |++||+.+. ||||||||++||||+++
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEEecCCccCCCCCHHHheeec-----------------------------------------CCHHHHHHHHHHHHHHC
Confidence 999999998865 999998542 99999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii 156 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVL 156 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999875 477763
No 209
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=308.51 Aligned_cols=186 Identities=32% Similarity=0.445 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CC---CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DP---LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~---~~G~i~~~g~~~~~~--~~~ 259 (382)
-|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|++ +| ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999974 36999999999999999999999999999999999995 36 489999999998643 344
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+|+.++|++|++.+|+.|++||+.++...... .++++.++++.+++.+.+. +.......+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHHH
Confidence 678889999999999999999999864211111 1233445566665543322 2344566899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 202 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLL 202 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEE
Confidence 99999999999999999999999999999999999999877777764
No 210
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=308.21 Aligned_cols=186 Identities=32% Similarity=0.445 Sum_probs=152.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~~ 259 (382)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999974 369999999999999999999999999999999999997 479999999999854 3445
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+|+.++|++|++.+|+.|++||+.++...... . ++++.++++..++++.. .........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHH
Confidence 678889999999999999999999865321111 1 12344555555553211 11234456899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 201 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIM 201 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999999999999999877777764
No 211
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-40 Score=303.63 Aligned_cols=177 Identities=35% Similarity=0.519 Sum_probs=151.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL--P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc--c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 6899999999742 2 39999999999999999999999999999999999999999999999876543 2568999
Q ss_pred ecCCCccccc-cHHHHHcCCC-CC---CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRD-LM---TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~-~~---~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|.+ |++||+.++. +. ...+++++.++++.+++.++++..| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999976 9999998642 11 1112456778888888888777765 58999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii 185 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLM 185 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999998754 667764
No 212
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.9e-40 Score=321.60 Aligned_cols=181 Identities=30% Similarity=0.417 Sum_probs=149.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999975 35999999999999999999999999999999999999999999999999987644 46788999
Q ss_pred EecCCCccc-cccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLF-SGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|+||++.+| ..|++||+.+.......+.+ .+.++++.+++ ++..++. ..+||||||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~----~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADAR----VSDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCC----hhhCCHHHHHHHHHHHH
Confidence 999999987 45999999753211112222 23334444443 3333443 36899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tili 227 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 227 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999864 678774
No 213
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-40 Score=325.96 Aligned_cols=167 Identities=33% Similarity=0.518 Sum_probs=143.4
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH----hcceEEecCCCccccc-c
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRHVGLVSQDITLFSG-T 278 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~-t 278 (382)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ +++++||+|++.+|+. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999988776543 4579999999999965 9
Q ss_pred HHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCc
Q 016798 279 VAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (382)
Q Consensus 279 i~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEp 354 (382)
++||+.++......+ .+++.++++.+++.++..+.| .+||||||||++|||||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999998753211112 245566777777776666554 68999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 355 TSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
|++||+.+.+.+++.|+++. .++|+|+
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIi 220 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVF 220 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999999999999875 3678764
No 214
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.8e-40 Score=311.26 Aligned_cols=184 Identities=33% Similarity=0.423 Sum_probs=148.6
Q ss_pred EEEEeEEEEeCCC-------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH
Q 016798 188 VKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~-------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 260 (382)
|+++||+|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 346999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcceEEecCCCc--cc-cccHHHHHcCCCC-CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 261 ---LRRHVGLVSQDIT--LF-SGTVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 261 ---~r~~i~~v~Q~~~--lf-~~ti~eNi~~~~~-~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
+|+.++|++|++. ++ ..|++||+.+... ....+ .+++.++++..++.+ .........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 5778999999983 44 3699999964311 00111 233444555544421 22344568999
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||||++||||++.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 206 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLF 206 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 9999999999999999999999999999999999999999999864 678764
No 215
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-40 Score=305.90 Aligned_cols=179 Identities=38% Similarity=0.525 Sum_probs=153.2
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 468999999975 369999999999999999999999999999999999999999999999999986654 3678999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|.+ |++||+.++......+ ++++..+++..++.+++...| ..||||||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999965 9999997542111111 345566777777777666554 69999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii 186 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999864 678774
No 216
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=308.85 Aligned_cols=186 Identities=30% Similarity=0.443 Sum_probs=153.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~~ 259 (382)
-|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4889999999974 3699999999999999999999999999999999999984 899999999988653 334
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+++.++|++|++.+|+.|++||+.++...... .++++.++++..++.+.+. ........+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHHH
Confidence 567889999999999999999999864211111 1233455666666544332 2245567899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili 200 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVI 200 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999999999999999999999999877778764
No 217
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-40 Score=299.76 Aligned_cols=163 Identities=26% Similarity=0.356 Sum_probs=141.3
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC---CCCceEEEcCEeCCCCCHHHH
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 261 (382)
.+.++||+|.|+.+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999853 4579999999999999999999999999999999999999 89999999999987654 356
Q ss_pred hcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
++.++|++|++.+|.. |++||+.++.. .. ..+....||||||||++|||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~--------~~----------------------~~~~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR--------CK----------------------GNEFVRGISGGERKRVSIAE 131 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh--------hc----------------------cccchhhCCHHHHHHHHHHH
Confidence 7789999999998875 99999975421 00 12344689999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
|++++|+++||||||++||+.+++.+.+.|+++.+ +.|+|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~i 173 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTF 173 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999864 35544
No 218
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-40 Score=291.65 Aligned_cols=148 Identities=37% Similarity=0.605 Sum_probs=135.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999999987665 567889999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+|.+ |++||+. ||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qrv~laral~~~p 114 (173)
T cd03230 78 LPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQRLALAQALLHDP 114 (173)
T ss_pred EecCCccccCCcHHHHhh-------------------------------------------cCHHHHHHHHHHHHHHcCC
Confidence 9999999876 9999973 9999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 115 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 150 (173)
T cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150 (173)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999864 467663
No 219
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=311.24 Aligned_cols=187 Identities=32% Similarity=0.467 Sum_probs=155.6
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 258 (382)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+ .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999974 3599999999999999999999999999999999999985 48999999999854 344
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCC-CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+++.++|++|++.+|+.|++||+.++..... .+ ++.+.++++.+++.+++.. ........||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 567889999999999999999999976421110 11 2345566777776544332 23456689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 204 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAI 204 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999877778764
No 220
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=310.34 Aligned_cols=185 Identities=31% Similarity=0.433 Sum_probs=151.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCCCC--HHH
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIR--LDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~~~--~~~ 260 (382)
-+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468999999974 369999999999999999999999999999999999986 47999999999886543 235
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCCC------CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKI------DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~------~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
+|+.++|++|++.+|+.|++||+.++....+. .++++.++++..++.+++ .+.+...+..|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 67889999999999999999999865211111 123445566666654432 12344567899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 203 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIV 203 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999877788774
No 221
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.5e-40 Score=304.74 Aligned_cols=179 Identities=36% Similarity=0.508 Sum_probs=150.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ +++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 468999999975 369999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+||++.+|++ |++||+.+.......+ .+++.++++..++.++.+. ...+|||||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR-----------YPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999998653211111 2344556666666555443 3468999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||..+++.+.+.|++..+ ++|+|+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli 186 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF 186 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999998765 578774
No 222
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.3e-40 Score=319.52 Aligned_cols=184 Identities=26% Similarity=0.336 Sum_probs=150.6
Q ss_pred cEEEEeEEEEeCCC-----------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 187 DVKFCNISFKYADN-----------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 187 ~i~~~~v~f~y~~~-----------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
-|+++||+++|+.+ ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2458999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhcceEEecCCC--cccc-ccHHHHHcCCCCC--CCCCH----HHHHHHHHHcChH-HHHHhCCCCcccccC
Q 016798 256 IRLDS---LRRHVGLVSQDI--TLFS-GTVAENIGYRDLM--TKIDM----ERVEHTARTANAD-EFVRTLPQGYNTHIG 322 (382)
Q Consensus 256 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~eNi~~~~~~--~~~~~----~~~~~~~~~~~l~-~~i~~lp~Gldt~vg 322 (382)
++..+ +|++++||+|+| .+|+ .|+.||+.+.... ...+. +.+.++++.+++. +.. .
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~-----------~ 156 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI-----------N 156 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh-----------c
Confidence 87543 577899999999 4774 6999998642110 01232 2344556666652 233 3
Q ss_pred CCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
....+||||||||++|||||+.+|++||+||||++||..++..+.+.|+++.+ +.|+|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~ 217 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF 217 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 34579999999999999999999999999999999999999999999999864 567764
No 223
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=309.61 Aligned_cols=187 Identities=35% Similarity=0.450 Sum_probs=154.7
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 258 (382)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999975 3599999999999999999999999999999999999863 58999999999864 334
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC---CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~---~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
..+|+.++|++|++.+|+.|+.||+.++...... .++.+.++++.+++.+++.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 4668899999999999988999999875321111 12344556666666544321 2345568999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii 215 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIM 215 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999987777764
No 224
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-40 Score=306.58 Aligned_cols=186 Identities=33% Similarity=0.468 Sum_probs=153.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~~ 259 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999974 3599999999999999999999999999999999999975 799999999998653 334
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+++.++|++|++.+|+.|++||+.++...... + .+++.++++.+++.+.+. .........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHHH
Confidence 667889999999999999999999865321111 1 234455666666543322 2234456899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiii 201 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVI 201 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 99999999999999999999999999999999999999877777764
No 225
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-40 Score=311.57 Aligned_cols=187 Identities=28% Similarity=0.387 Sum_probs=154.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCCC-HH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIR-LD 259 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~~-~~ 259 (382)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 20 ~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 20 PAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred cEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 36899999999974 3699999999999999999999999999999999999986 6999999999987653 34
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCC-CCCHHHH----HHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMT-KIDMERV----EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~-~~~~~~~----~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.++++++|++|++.+|+.|++||+.++.... ..+.++. .+.++..++.++ +++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHH
Confidence 6788999999999999999999998653111 1233332 233444444322 223455667899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||..+.+.+.+.|+++.+++|+|+
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii 217 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVII 217 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999877777764
No 226
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-40 Score=308.63 Aligned_cols=186 Identities=32% Similarity=0.465 Sum_probs=152.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~~ 259 (382)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 58999999999753 599999999999999999999999999999999999974 69999999999853 3455
Q ss_pred HHhcceEEecCCCcccc-ccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.++|++|++.+|. .|++||+.++...... + ++.+.++++.+++.+++. ........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 67889999999999997 5999999754211111 1 234455566666543321 233455689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 202 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVI 202 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999877778764
No 227
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-40 Score=306.75 Aligned_cols=186 Identities=33% Similarity=0.471 Sum_probs=155.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~~--~~~ 259 (382)
.|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999974 359999999999999999999999999999999999874 4899999999998653 455
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCC-CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+++.++|+||++.+|+.|++||+.++..... .+ .+++.++++.+++.+++.. .+...+..|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 67889999999999999999999986521111 11 2345566777777665532 134557899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|++++|||||++||..+...+.+.|+++.+++|+|+
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii 200 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVI 200 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999877778764
No 228
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-40 Score=305.83 Aligned_cols=179 Identities=37% Similarity=0.534 Sum_probs=153.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE---eCCCCCHHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH---DVQNIRLDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~---~~~~~~~~~~r~ 263 (382)
.|+++++++.|+.. .+++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++. ..-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhc
Confidence 47889999999764 6899999999999999999999999999999999999999999999999 55543 23346
Q ss_pred ceEEecCCCcccc-ccHHHHHcCCCCCC------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 264 HVGLVSQDITLFS-GTVAENIGYRDLMT------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 264 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~~------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+||+|+|+.-+|. .||++||+||.... .....++.+.++.+++..+-++.| .+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 7999999999985 59999999996321 123457777888999988888877 89999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
||||||..+|++|+||||+++||.+-.+.+.+-|+++.. +.|++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttv 192 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTV 192 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEE
Confidence 999999999999999999999999999999888887653 34544
No 229
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=7.8e-40 Score=301.35 Aligned_cols=177 Identities=25% Similarity=0.381 Sum_probs=150.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 468999999975 36999999999999999999999999999999999999999999999999875321 357999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+|. .|++||+.++......+++++.++++..++.++.+. ...+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 599999975421112345677777888877765544 34789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++++|||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii 179 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL 179 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999998864 567764
No 230
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.3e-40 Score=305.59 Aligned_cols=182 Identities=25% Similarity=0.332 Sum_probs=145.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHHH-hcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSL-RRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~-r~~ 264 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999974 35999999999999999999999999999999999994 7999999999999988776554 445
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCC-C------CCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCC-CCChH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLM-T------KID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS-SLSGG 331 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~-~------~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~-~lSgG 331 (382)
++|++|++.+|++ |++||+.+.... . ..+ .+++.++++..++.+.. ...... .||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------cccccccCcCHH
Confidence 9999999999976 899998653110 0 011 12334444444443211 112223 59999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~ 199 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLI 199 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEE
Confidence 99999999999999999999999999999999999999999864 577764
No 231
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6.1e-40 Score=302.72 Aligned_cols=185 Identities=29% Similarity=0.472 Sum_probs=145.8
Q ss_pred EEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC---CCCceEEEcCEeCCCCCHHHHh
Q 016798 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~r 262 (382)
+.++||+|+|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5689999999865 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEecCCCccccc-cHHHHHcCCCCCC--CCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 263 RHVGLVSQDITLFSG-TVAENIGYRDLMT--KIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+.++|++|++.+|++ |++||+.++.... ....++.... ...+ .++.+ +++.........|||||+||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK----RVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHH----HHHHHHHHhh--cchhhhcccccCcCHHHHHHHHH
Confidence 889999999999987 9999998642110 0001111000 0111 12211 23323334567999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii 198 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVIL 198 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999998754 567763
No 232
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-39 Score=312.10 Aligned_cols=186 Identities=33% Similarity=0.470 Sum_probs=155.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~~--~~~ 259 (382)
.|+++||+++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 45 ~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 45 KLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred eEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999975 369999999999999999999999999999999999986 6899999999998643 355
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCC-----------------CCCHHHHHHHHHHcChHHHHHhCCCCcccccC
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMT-----------------KIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vg 322 (382)
.+|+.++|++|++.+|+.|++||+.++.... ...++++.++++.+++.+ ++++.+.
T Consensus 123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~ 195 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDRLD 195 (305)
T ss_pred HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHHhc
Confidence 6788999999999999999999998652110 001233445555555432 3344556
Q ss_pred CCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiii 254 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVV 254 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 67789999999999999999999999999999999999999999999999987777764
No 233
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=309.65 Aligned_cols=187 Identities=33% Similarity=0.457 Sum_probs=152.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCCC--CH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~~--~~ 258 (382)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35899999999975 359999999999999999999999999999999999864 4999999999998643 23
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++...... + .+++.++++..++.+.+. .........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHHH
Confidence 3567889999999999988999999875321111 1 223445555555432221 123445689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIi 236 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999877777764
No 234
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-39 Score=297.43 Aligned_cols=179 Identities=22% Similarity=0.283 Sum_probs=147.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++++|++ +++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5899999999975 3599999999999999999999999999999999999999999999999988652 3456799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCC-CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKI-DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~-~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|++|++.+|.. |++||+.+....... .++.+.+.++..++.+.. + .....||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-------D----TLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-------c----CChhhCCHHHHHHHHHHHHHhc
Confidence 99999999876 999999754211111 233445555555554332 2 2347899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+|+++||||||++||+++.+.+.+.|+++.+ ++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 192 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALV 192 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999988654 567664
No 235
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=304.87 Aligned_cols=186 Identities=31% Similarity=0.378 Sum_probs=156.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~~ 259 (382)
.+.+++++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 5889999999964 3699999999999999999999999999999999999986 799999999998643 344
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCC---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
.+++.++|++|++.+|..|++||+.++..... ...+++.++++.+++.+.+.. ..++...+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 66788999999999999999999987532111 113466777888777555432 23456789999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~ 203 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIAL 203 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999877777763
No 236
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2e-39 Score=306.69 Aligned_cols=184 Identities=27% Similarity=0.356 Sum_probs=149.6
Q ss_pred cEEEEeEEEEeCCC-------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~-------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~ 259 (382)
-|+++||+++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 23699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEecCCCc--cccc-cHHHHHcCCCCC-CCCC----HHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCCh
Q 016798 260 SLRRHVGLVSQDIT--LFSG-TVAENIGYRDLM-TKID----MERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~--lf~~-ti~eNi~~~~~~-~~~~----~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSg 330 (382)
..++.++|++|++. +++. |+.+|+.+.... ...+ .+++.++++.+++. +.... ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY-----------YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc-----------CchhcCH
Confidence 56678999999985 4444 899998642110 0111 24556677777773 33322 2368999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 205 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 999999999999999999999999999999999999999999863 677764
No 237
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.9e-39 Score=305.90 Aligned_cols=182 Identities=31% Similarity=0.404 Sum_probs=151.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCC-----CH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNI-----RL 258 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~-----~~ 258 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999974 36999999999999999999999999999999999999986 49999999988653 23
Q ss_pred HHHhcceEEecCCCccccc-cHHHHHcCCCCCC------------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCC
Q 016798 259 DSLRRHVGLVSQDITLFSG-TVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~------------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G 325 (382)
..+++.++|++|++.+|.. |++||+.++.... ....+++.++++..++.++.+. ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 4567889999999998874 9999998653100 0112345566666666554433 44
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+||||||||++||||++.+|++|||||||++||..+.+.+.+.|+++.+ ++|+|.
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 208 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVV 208 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 78999999999999999999999999999999999999999999999863 577764
No 238
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.7e-39 Score=285.88 Aligned_cols=143 Identities=36% Similarity=0.482 Sum_probs=130.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999743 46999999999999999999999999999999999999999999999873 57999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+++.|++||+.++ ....||||||||++||||++++|+
T Consensus 69 ~~q~~~~~~~tv~~nl~~~-------------------------------------~~~~LS~G~~~rv~laral~~~p~ 111 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP-------------------------------------WDDVLSGGEQQRLAFARLLLHKPK 111 (166)
T ss_pred ECCCCccccccHHHHhhcc-------------------------------------CCCCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999989999999652 237899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+++.+.+.+.++++ ++|+|+
T Consensus 112 ~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiii 143 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKEL--GITVIS 143 (166)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh--CCEEEE
Confidence 99999999999999999999999987 467663
No 239
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-39 Score=306.81 Aligned_cols=181 Identities=27% Similarity=0.300 Sum_probs=151.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC--------CceEEEcCEeCCCCCHH
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL--------SGCILVDDHDVQNIRLD 259 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~--------~G~i~~~g~~~~~~~~~ 259 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 689999999965 36999999999999999999999999999999999999998 99999999999887777
Q ss_pred HHhcceEEecCCCc-cccccHHHHHcCCCCCC----C-CC---HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 260 SLRRHVGLVSQDIT-LFSGTVAENIGYRDLMT----K-ID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~-lf~~ti~eNi~~~~~~~----~-~~---~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
.+++.++|++|++. +|..|++||+.++.... . .. .+.+.++++..++ ++.++....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCH
Confidence 78888999999986 57789999998753110 0 11 1233444555544 4444556689999
Q ss_pred HHHHHHHHHHHcc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 331 GQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||++||||++ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii 210 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLA 210 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999 59999999999999999999999999998864 577764
No 240
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=305.93 Aligned_cols=188 Identities=31% Similarity=0.438 Sum_probs=155.5
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCC----C
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQ----N 255 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~----~ 255 (382)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++. .
T Consensus 14 ~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 457999999999975 3699999999999999999999999999999999999975 7999999998774 2
Q ss_pred CCHHHHhcceEEecCCCccccccHHHHHcCCCCCCC-----CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 256 IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 256 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-----~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
.+...+++.++|++|++.+|.+|++||+.++..... ..++++.++++.+++.+. +.+.+......|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCCH
Confidence 344567888999999999999999999986521111 113455566666665432 22344556789999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+||++||||++++|+++||||||++||..+...+.+.|+++.+++|+|+
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiii 215 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILI 215 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999877777764
No 241
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.2e-39 Score=313.36 Aligned_cols=172 Identities=31% Similarity=0.427 Sum_probs=143.0
Q ss_pred EeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc
Q 016798 196 KYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (382)
Q Consensus 196 ~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 275 (382)
+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|++|++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4643 369999999999999999999999999999999999999999999999999875 3456788999999999999
Q ss_pred cc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEE
Q 016798 276 SG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350 (382)
Q Consensus 276 ~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ili 350 (382)
+. |++||+.+.......+ ++++.++++.+++.+..+ ....+||||||||++|||||+.+|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999997642111112 234556666666654433 2347899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 351 LDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~ 179 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999864 577764
No 242
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.7e-39 Score=297.89 Aligned_cols=184 Identities=30% Similarity=0.393 Sum_probs=145.4
Q ss_pred EEEEeEEEEeCCC-----CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc--CE--eCCCCCH
Q 016798 188 VKFCNISFKYADN-----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD--DH--DVQNIRL 258 (382)
Q Consensus 188 i~~~~v~f~y~~~-----~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~--g~--~~~~~~~ 258 (382)
|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 2368999999999999999999999999999999999999999999998 42 5555554
Q ss_pred HH---H-hcceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 259 DS---L-RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 259 ~~---~-r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
.. + ++.++|++|++.+|+. |++||+.+.......+ .+++.++++..++.+... ...+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 43 3 4579999999998865 9999997531111112 233344455554433221 22467899
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 204 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIG 204 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999999999864 677764
No 243
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=303.65 Aligned_cols=186 Identities=33% Similarity=0.440 Sum_probs=151.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC--C---CCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--~---~~G~i~~~g~~~~~--~~~~ 259 (382)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 369999999999999999999999999999999999975 4 58999999999864 2344
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+++.++|++|++.+|+.|++||+.++...... . ++++.++++.+++.+.+ .........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHHH
Confidence 667889999999999999999999864211111 1 22334445555543222 22344556899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+...+.+.|+++.++.|+|+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 202 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIIL 202 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999877777764
No 244
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=303.41 Aligned_cols=187 Identities=31% Similarity=0.444 Sum_probs=154.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-----CceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-----~G~i~~~g~~~~~--~~~ 258 (382)
+.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999974 35899999999999999999999999999999999999985 8999999998753 344
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++...... + ++.+.++++..++.+++.. ..+.....||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 5678889999999999999999999764211011 1 2345566777766544432 23456689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
||++||||++++|+++||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii 206 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999864 3677764
No 245
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-39 Score=299.66 Aligned_cols=178 Identities=34% Similarity=0.519 Sum_probs=151.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999974 27999999999999999999999999999999999999999999999999877554 3678999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|. .|++||+.++...... .++++.++++.+++.+++.+.| .+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 6999999864321111 1234566777777777665544 68999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|++++|||||++||..+.+.+.+.|+++.+ ++|+|.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili 185 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLH 185 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999998754 677764
No 246
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-39 Score=312.32 Aligned_cols=184 Identities=27% Similarity=0.326 Sum_probs=149.9
Q ss_pred cEEEEeEEEEeCCC--------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH
Q 016798 187 DVKFCNISFKYADN--------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL 258 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~ 258 (382)
-|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2368999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcceEEecCCCc--cccc-cHHHHHcCC-----CCCCCCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCC
Q 016798 259 D---SLRRHVGLVSQDIT--LFSG-TVAENIGYR-----DLMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGS 326 (382)
Q Consensus 259 ~---~~r~~i~~v~Q~~~--lf~~-ti~eNi~~~-----~~~~~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~ 326 (382)
. .+|++|+||+|+|. +++. |+.+|+... ........+++.++++.+++.+ ..+. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~p~ 153 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR-----------YPH 153 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC-----------CCc
Confidence 3 46788999999994 6654 899988531 1000011234566677776642 2222 347
Q ss_pred CCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~ 210 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVF 210 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8999999999999999999999999999999999999999999998864 667764
No 247
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=302.92 Aligned_cols=186 Identities=33% Similarity=0.453 Sum_probs=149.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-----CceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-----~G~i~~~g~~~~~--~~~~ 259 (382)
-++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999974 36999999999999999999999999999999999999874 8999999999865 3345
Q ss_pred HHhcceEEecCCCccccc-cHHHHHcCCCCCCCC-CHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI-DMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~-~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.++|++|++.+|.. |++||+.++...... .+++ ..+.++..++.+.+ ++.++ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLK----TPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhc----CCcccCCHHHH
Confidence 678889999999999975 999999764211111 1222 22233334433222 22233 34578999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 202 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIII 202 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999877777764
No 248
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-39 Score=315.99 Aligned_cols=176 Identities=28% Similarity=0.418 Sum_probs=150.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHHHHhc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRR 263 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~ 263 (382)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 566 999999642 23 89999999999999999999999999999999999999999999998653 2345678
Q ss_pred ceEEecCCCcccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 264 HVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 264 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+++|++|++.+|+ .|++||+.++.. ....+++.++++..++.++.++.| .+||||||||++|||||
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL 143 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMA--KSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhh--hhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999999996 499999988643 224566777888887766665544 79999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~ 184 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILY 184 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999998864 567763
No 249
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.4e-39 Score=290.43 Aligned_cols=175 Identities=20% Similarity=0.307 Sum_probs=145.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 689999999964 3344 599999999999999999999999999999999999999999999886532 346999
Q ss_pred ecCCCcc-ccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+ |..|++||+.+...... .++++.++++.+++.++.. ..+.+||||||||++||||++++|
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYN-SAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcc-cHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999865 57799999987542211 3456667777777765543 345799999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRL-LGHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~-~~~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.+++. .+++|+|+
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 178 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLL 178 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999754 35677764
No 250
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.8e-39 Score=287.82 Aligned_cols=150 Identities=33% Similarity=0.469 Sum_probs=134.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 265 (382)
-|+++|++++| +++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 7999999999999999999999999999999999999999999999999988763 4567889
Q ss_pred EEecCCC---ccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 266 GLVSQDI---TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 266 ~~v~Q~~---~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
+|++|++ .++ ..|++||+.++.. ||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cCHHHHHHHHHHHH
Confidence 9999995 344 5699999965310 99999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 159 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999998854 677764
No 251
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-39 Score=304.61 Aligned_cols=180 Identities=24% Similarity=0.332 Sum_probs=146.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999743 469999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EecCCCcc---ccccHHHHHcCCCCC-------C-CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 267 LVSQDITL---FSGTVAENIGYRDLM-------T-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 267 ~v~Q~~~l---f~~ti~eNi~~~~~~-------~-~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
|++|++.+ +..++++|+.++... . ....+.+.++++..++.++.+. ...+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-----------QIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHH
Confidence 99999875 455899998753210 0 0112345566777777655433 336799999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tvii 197 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLV 197 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999864 677764
No 252
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.6e-39 Score=291.78 Aligned_cols=156 Identities=36% Similarity=0.501 Sum_probs=138.5
Q ss_pred cEEEEeEEEEeCCC----CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHH
Q 016798 187 DVKFCNISFKYADN----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~----~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~ 260 (382)
.|+++||+|+|++. ..++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+++.++|++|++.+|.. |++||+.++.. . . .||||||||++||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--------~----~------------------------~LS~G~~qrv~la 123 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK--------L----R------------------------GLSGGERKRVSIA 123 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH--------h----c------------------------cCCHHHHHHHHHH
Confidence 67889999999998875 99999954210 0 0 8999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++++|+++||||||++||..+.+.+.+.|+++.+ ++|+|+
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 166 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999864 678764
No 253
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-39 Score=287.45 Aligned_cols=180 Identities=30% Similarity=0.447 Sum_probs=153.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 265 (382)
-++++||+..|+. .++|++|||++++||+++++|+||+|||||++.|+|+.+|.+|+|.++|.|+...+++.. |.-|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 4789999999976 369999999999999999999999999999999999999999999999999999987765 5579
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+||||.-.+|+. ||+||+.+|..... +++ .....+++..+-+| -+.......+.+|||||+|.+||||||+.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~--~~~----~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARR--DKE----AQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccc--ccc----cccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 999999999966 99999997742111 101 11111344455556 46666777899999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
+|++|+|||||.+|-|.-.++|.+.|+++.+
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~ 184 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRK 184 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985
No 254
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-39 Score=302.62 Aligned_cols=187 Identities=31% Similarity=0.420 Sum_probs=152.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC------EeCCCCCHH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD------HDVQNIRLD 259 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g------~~~~~~~~~ 259 (382)
+.|.++|++++|++ +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35999999999975 3699999999999999999999999999999999999999997666665 566666667
Q ss_pred HHhcceEEecCCCccccc-cHHHHHcCCCCCCCC-CH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI-DM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~-~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.++|++|++.+|.+ |++||+.++...... ++ +.+.++++..++.+++. ......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 788899999999999976 999999865321111 22 23345555555543221 123445688999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|+++||||||++||..+++.+.+.|+++.+++|+|+
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiil 207 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVI 207 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEE
Confidence 999999999999999999999999999999999999999877778774
No 255
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=8.2e-39 Score=300.97 Aligned_cols=186 Identities=23% Similarity=0.320 Sum_probs=147.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe-----CCCCCHHH-
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-----VQNIRLDS- 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~-----~~~~~~~~- 260 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999975 369999999999999999999999999999999999999999999999998 77766544
Q ss_pred ---HhcceEEecCCCc--ccc-ccHHHHHcCCCC-CCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHH
Q 016798 261 ---LRRHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQ 332 (382)
Q Consensus 261 ---~r~~i~~v~Q~~~--lf~-~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq 332 (382)
+++.++|++|++. ++. .|+.||+.+... ....+..+..+ ...++++.+ |++ +.+...+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 3567999999984 443 488888853210 00011112111 123455554 333 34566778999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 207 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI 207 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 9999999999999999999999999999999999999998754 667764
No 256
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-39 Score=310.89 Aligned_cols=186 Identities=24% Similarity=0.297 Sum_probs=148.1
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC----CCceEEEcCEeCCCCCHHHH
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~ 261 (382)
|+++|+++.|+... ..+|+||||+|++||++||||+||||||||+++|+|+++| ++|+|.++|.++.+++.+++
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999997532 3589999999999999999999999999999999999974 89999999999988887655
Q ss_pred h----cceEEecCCCc--cccc-cHHHHHc----CCCC-CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 262 R----RHVGLVSQDIT--LFSG-TVAENIG----YRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 262 r----~~i~~v~Q~~~--lf~~-ti~eNi~----~~~~-~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
+ +.|+||+|+|. +++. |+.+++. .... ......+++.++++.+++.+.. ..+.....+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 4 36999999995 4433 6665553 2111 0011234566777777764321 11334568999
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||||++|||||+.+|++||+||||++||..++.++++.|+++.+ +.|+|+
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~ 209 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVL 209 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999999999864 567764
No 257
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-40 Score=286.71 Aligned_cols=181 Identities=27% Similarity=0.437 Sum_probs=153.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
+++.+++.+|++. ..+++||||+++.||++||.|||||||||+++.|++++.|++|.|.+||.|... ++...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 6789999999863 358999999999999999999999999999999999999999999999999876 55678999999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++-+..|+.. |++|||.|.....+.+. .++.+..+..++.+.++ .+..+||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 9988788854 99999986532222222 34445555555555553 35678999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++||++++|||||||||..+.+.+.+.+++++. +|++|+
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viF 188 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIF 188 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEE
Confidence 999999999999999999999999999999986 888875
No 258
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7.3e-39 Score=314.82 Aligned_cols=177 Identities=30% Similarity=0.406 Sum_probs=146.4
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE----eCCCCCHHHH---h-c
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIRLDSL---R-R 263 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~----~~~~~~~~~~---r-~ 263 (382)
++..+|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | +
T Consensus 29 ~~~~~~g~--~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 29 EILDETGL--VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHhhCC--EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 44455643 35899999999999999999999999999999999999999999999996 5666655544 3 5
Q ss_pred ceEEecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 264 HVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 264 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+++||+|++.+|+ .|++||+.++......+ .+++.++++.+++.++.+..| .+||||||||++|
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~L 175 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGL 175 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 7999999999997 69999998763211122 234566777777766655544 6899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||+.+|+|||||||||+||+.+...+++.|.++.+ ++|+|+
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~ 220 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIF 220 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999864 678774
No 259
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-39 Score=289.52 Aligned_cols=155 Identities=28% Similarity=0.409 Sum_probs=136.5
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHHHh
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
.|+++|++|.|++. ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58899999999752 246999999999999999999999999999999999986 489999999999875 4567
Q ss_pred cceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
++++|++|++.+|.. |++||+.++. .++ +||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~------------~~~------------------------~LSgGe~qrv~la~a 122 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA------------LLR------------------------GLSVEQRKRLTIGVE 122 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH------------HHh------------------------cCCHHHhHHHHHHHH
Confidence 889999999998875 9999996531 000 899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 163 (192)
T cd03232 123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163 (192)
T ss_pred HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999999998864 677764
No 260
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.2e-39 Score=313.43 Aligned_cols=175 Identities=27% Similarity=0.396 Sum_probs=144.8
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----HHHHhcceEE
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSLRRHVGL 267 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~~ 267 (382)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 34 999999999999999999999999999999999999999999999986532 2356788999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC--HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++|++.+|+. |++||+.++....... .+++.+.++..++.++.+. ...+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 9999998764211111 2235556666666554443 447999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiii 187 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999864 577764
No 261
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-39 Score=293.56 Aligned_cols=174 Identities=29% Similarity=0.407 Sum_probs=142.1
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHHHHhcceEE
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRRHVGL 267 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~ 267 (382)
+|+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +...+++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999763 34 99999999 99999999999999999999999999999999999988643 23356778999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCC--CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTK--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++|++.+|. .|++||+.++..... ..++++.+.++..++.+ .+......||||||||++||||++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-----------LLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-----------HhhcCcccCCHHHHHHHHHHHHHhc
Confidence 999999986 599999986532110 11233445555555443 3344568999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 187 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIF 187 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 9999999999999999999999999998854 577764
No 262
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.4e-38 Score=309.05 Aligned_cols=187 Identities=24% Similarity=0.336 Sum_probs=148.8
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCCHHHH
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~ 261 (382)
-|+++|+++.|+.. ...+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 246899999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----cceEEecCCC--cccc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 262 R----RHVGLVSQDI--TLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 262 r----~~i~~v~Q~~--~lf~-~ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
+ +.|+||+|+| .+++ .|+.+|+..... ....+. +++.+.++.+++ |++. ..++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999999 4554 378887743110 001222 233344444443 3332 22456678999
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||||++|||||+.+|++||+||||++||..+...+.+.|+++.+ +.|+|+
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~ 217 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIM 217 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999999999999999999999865 567764
No 263
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-38 Score=296.56 Aligned_cols=168 Identities=29% Similarity=0.463 Sum_probs=146.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4889999999975 3599999999999999999999999999999999999999999999986 34699
Q ss_pred EecCCCcccc---ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 267 LVSQDITLFS---GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 267 ~v~Q~~~lf~---~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|++|++.++. .|+++|+.+.. ..+++++.++++.+++.++++.. ...||||||||++||||++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRP---GTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALL 136 (251)
T ss_pred EeccccccccccChhHHHHHhccc---cccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHh
Confidence 9999998765 48999986532 23467788888888887776543 3789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii 176 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM 176 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999998764 677764
No 264
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-36 Score=285.92 Aligned_cols=359 Identities=23% Similarity=0.259 Sum_probs=260.1
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHH--HHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE--SARFRRLAH 80 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~--~~~~~~~~~ 80 (382)
+++.|+||.+.+++++.+.+.++...+...+..+.....++...++.+..+..++|.++++.+....++ .+.+....+
T Consensus 140 aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~ 219 (546)
T COG4615 140 AYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219 (546)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchH
Confidence 567899999999998888777777777788888888888999999999999999999999987633221 122221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 81 SDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (382)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (382)
.+.+...+...+......+..++.++.+ .++|+. ...++-+.....++++...++-.|+.+....++.+..+.++.
T Consensus 220 ~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~la---l~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~ 296 (546)
T COG4615 220 EYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA---LSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAF 296 (546)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 1111101111111011111111111111 111111 122333444445566666677789999999999999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 160 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|+.++-..|+. ...+...+.+ .-..|+++||.|.|+++. --+.-||++|++||.+-|+|.|||||||++++|.|+|
T Consensus 297 ~kiakle~~~~~-a~~~~~q~~p-~~~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~ 373 (546)
T COG4615 297 NKIAKLELAPYK-ADFPRPQAFP-DWKTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY 373 (546)
T ss_pred HHHHHhhcCCcc-ccCCCCCcCC-cccceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc
Confidence 999887653322 2222222222 245899999999998764 3578899999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||.+++.-+++++|+-++-|+.|.|+|+.++ + ++...+++.+...++...+.+..+- -+|-=+
T Consensus 374 ~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~-~e~~as~q~i~~~LqrLel~~ktsl-~d~~fs 445 (546)
T COG4615 374 QPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------G-PEGKASPQLIEKWLQRLELAHKTSL-NDGRFS 445 (546)
T ss_pred CCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------C-CccCCChHHHHHHHHHHHHhhhhcc-cCCccc
Confidence 9999999999999999999999999999999999998754 2 2223577888888877777655432 222111
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCcee
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVR 380 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI 380 (382)
-..||-|||.|+|+--|++.+.||++|||=-+--||.-++.+.+.+--.. .|||++
T Consensus 446 -----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~ 503 (546)
T COG4615 446 -----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIF 503 (546)
T ss_pred -----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEE
Confidence 25899999999999999999999999999999999999998888765543 478886
No 265
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=308.76 Aligned_cols=187 Identities=20% Similarity=0.271 Sum_probs=149.3
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC----CCCceEEEcCEeCCCCCHHH
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD----PLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~----~~~G~i~~~g~~~~~~~~~~ 260 (382)
-|+++|++++|+.. ...+++||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.+++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999632 2458999999999999999999999999999999999996 58999999999998887665
Q ss_pred Hh----cceEEecCCCc--ccc-ccHHHHHcCCCC---CC-----C--CCHHHHHHHHHHcChHHHHHhCCCCcccccCC
Q 016798 261 LR----RHVGLVSQDIT--LFS-GTVAENIGYRDL---MT-----K--IDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (382)
Q Consensus 261 ~r----~~i~~v~Q~~~--lf~-~ti~eNi~~~~~---~~-----~--~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge 323 (382)
++ +.|+||+|+|. +++ .|+.+|+..... .. . ...+++.++++.+++.+.-. ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 43 47999999997 333 489999863100 00 0 01245667777777753211 1123
Q ss_pred CCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
...+||||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~ 214 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILL 214 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3479999999999999999999999999999999999999999999999865 567764
No 266
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.6e-38 Score=299.18 Aligned_cols=187 Identities=34% Similarity=0.447 Sum_probs=148.7
Q ss_pred EEEEeEEEEeCCC-------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-
Q 016798 188 VKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD- 259 (382)
Q Consensus 188 i~~~~v~f~y~~~-------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~- 259 (382)
|+++||+|+|+++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 7899999999741 34699999999999999999999999999999999999999999999999999876653
Q ss_pred --HHhcceEEecCCCc--cc-cccHHHHHcCCCC-CCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHH
Q 016798 260 --SLRRHVGLVSQDIT--LF-SGTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQ 332 (382)
Q Consensus 260 --~~r~~i~~v~Q~~~--lf-~~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq 332 (382)
.+++.++|++|++. ++ ..|++||+.+... ....+.++ ....+.+.++.+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 46788999999984 44 4599999854210 00111111 111223344443 5543 3455678999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||++||||++.+|++|||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii 207 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLF 207 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 9999999999999999999999999999999999999998864 677764
No 267
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.9e-38 Score=297.87 Aligned_cols=182 Identities=21% Similarity=0.277 Sum_probs=146.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC----CCceEEEcCEeCCCCCHHHHh
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~r 262 (382)
.|+++|++++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 3 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cceEEecCCCc-ccc--ccHHHHHcCCC--CCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDIT-LFS--GTVAENIGYRD--LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~-lf~--~ti~eNi~~~~--~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+.++|++|++. .|. .|+.+|+.+.. ......++++.++++.+++.++ ++.++....+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 48888875310 0011234556667777666432 12345566899999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++.+|++|||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~ 196 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLL 196 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999999999999999999998753 577764
No 268
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.2e-40 Score=286.22 Aligned_cols=176 Identities=29% Similarity=0.480 Sum_probs=149.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-ce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i 265 (382)
.+..+|+.++|.. +++++++||++++||++++.|||||||||.+.++.|+.+|++|+|.+||.|+..+++....+ -|
T Consensus 4 ~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 5788999999975 46999999999999999999999999999999999999999999999999999999886544 59
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC------HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID------MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~------~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
||+||+|.+|.+ ||+|||.........+ .+++.+.++..++.+.- ...|..||||||+|+.|
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-----------~~~a~sLSGGERRR~EI 150 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-----------DSKAYSLSGGERRRVEI 150 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-----------cCcccccccchHHHHHH
Confidence 999999999977 9999997543211111 12334455555554433 34579999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
||||..+|+.++||||++++||.+-..|++.++.++.
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~ 187 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998864
No 269
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.7e-38 Score=324.60 Aligned_cols=182 Identities=26% Similarity=0.335 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh-cce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~i 265 (382)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999974 3599999999999999999999999999999999999999999999999999877766554 469
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++|++.+|.. |++||+.++........+++.++++..++.++ ......+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998875 99999987642111112344555555554332 233457899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 195 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVF 195 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999998754 577764
No 270
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.6e-38 Score=283.26 Aligned_cols=151 Identities=39% Similarity=0.553 Sum_probs=134.8
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++||+|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 46899999975 3699999999999999999999999999999999999999999999999999888888888889999
Q ss_pred cCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCE
Q 016798 269 SQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (382)
Q Consensus 269 ~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~i 348 (382)
+| +++.+++.+++.. ....||||||||++||||++++|++
T Consensus 79 ~q-----------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 79 PQ-----------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HH-----------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99 5555666655443 3478999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 349 LILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 349 lilDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||||++||+++...+.+.|+++.+ ++|+|+
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii 153 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999998865 677764
No 271
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.4e-38 Score=285.82 Aligned_cols=154 Identities=30% Similarity=0.432 Sum_probs=134.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC--CCCCCceEEEcCEeCCCCCHHHH-hcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~~ 264 (382)
++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 468999999974 3699999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
++|++|++.+|++ |+++|+ .. ...+||||||||++||||++
T Consensus 79 i~~v~q~~~~~~~~~~~~~l---------------------------~~-----------~~~~LS~G~~qrv~laral~ 120 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL---------------------------RY-----------VNEGFSGGEKKRNEILQLLL 120 (200)
T ss_pred EEEeecChhhccCccHHHHH---------------------------hh-----------ccccCCHHHHHHHHHHHHHh
Confidence 9999999999876 555554 00 11479999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii 159 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999864 677764
No 272
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.4e-38 Score=295.10 Aligned_cols=186 Identities=24% Similarity=0.314 Sum_probs=146.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe-----CCCCCHHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-----VQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~-----~~~~~~~~~ 261 (382)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999975 358999999999999999999999999999999999999999999999987 666655432
Q ss_pred ----hcceEEecCCCc--cc-cccHHHHHcCCCC-CCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHH
Q 016798 262 ----RRHVGLVSQDIT--LF-SGTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQ 332 (382)
Q Consensus 262 ----r~~i~~v~Q~~~--lf-~~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq 332 (382)
++.++|++|++. ++ ..|+.+|+.+... .......+. ...+.++++.+ |++ +........|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 457999999985 33 4588888853100 000011111 11233455555 343 45566778999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 204 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII 204 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999998753 677764
No 273
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2e-38 Score=294.49 Aligned_cols=168 Identities=29% Similarity=0.362 Sum_probs=134.5
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec-CCCccc-cccH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS-QDITLF-SGTV 279 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf-~~ti 279 (382)
.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987553 345678899997 667776 4599
Q ss_pred HHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcC
Q 016798 280 AENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (382)
Q Consensus 280 ~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpt 355 (382)
+||+.+.......+.++ +..+++..++.+.. ++ ....||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99997542111122222 23344444443322 32 34689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 356 SALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 356 s~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiii 209 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLL 209 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999854 577764
No 274
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.9e-38 Score=294.54 Aligned_cols=183 Identities=24% Similarity=0.373 Sum_probs=147.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC--CCCCCceEEEcCEeCCCCCHHHHhc-
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSLRR- 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~r~- 263 (382)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4899999999974 3599999999999999999999999999999999998 6899999999999998877665554
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCC-------CCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCC-CCCh
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLM-------TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS-SLSG 330 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~-------~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~-~lSg 330 (382)
.++|++|++.+|++ |+.+|+.++... .+.+ .+++.++++.+++.+ +.+..... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCH
Confidence 48999999999976 899998653210 0011 123344555555431 11222233 5999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||||++||||++++|+++||||||++||..+.+.+.+.|+++.+ ++|+|+
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 206 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIIL 206 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999998864 678764
No 275
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-38 Score=321.92 Aligned_cols=182 Identities=27% Similarity=0.397 Sum_probs=149.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHH-Hhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDS-LRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 263 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999974 3699999999999999999999999999999999999996 8999999999998766554 467
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCCC---CCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLMT---KIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~~---~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
.++||+|++.+|.. |++||+.++.... ..+.+ ++.++++.. |++........+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL-----------KLDINPATPVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHc-----------CCCCCcccchhhCCHHHHHH
Confidence 89999999998865 9999998764211 11222 233333333 33333344557899999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~ 198 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIY 198 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999875 3567764
No 276
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-38 Score=321.17 Aligned_cols=182 Identities=29% Similarity=0.386 Sum_probs=149.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 265 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999974 359999999999999999999999999999999999999999999999999875543 3567889
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC--C-CCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT--K-IDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~--~-~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+|++|++.+|+. |++||+.++.... . .+. +++.++++.++ ++........+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLG-----------VDIDPDTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcC-----------CCCCcCCchhhCCHHHHHHHH
Confidence 999999998875 9999998753110 1 122 22333344333 332233455789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 195 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILY 195 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999998754 577764
No 277
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-38 Score=323.06 Aligned_cols=182 Identities=24% Similarity=0.361 Sum_probs=148.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 265 (382)
-|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999974 359999999999999999999999999999999999999999999999999987776543 4679
Q ss_pred EEecCCCccccc-cHHHHHcCCCCC----CC---CCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLM----TK---IDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~----~~---~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
+||+|++.+|.. |++||+.++... .. .+. +++.++++..++ +........+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL-----------KVDLDEKVANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC-----------CCCcccchhhCCHHHH
Confidence 999999998865 999999875310 01 011 223333433333 3233344578999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiii 200 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVY 200 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999864 577764
No 278
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.8e-37 Score=290.06 Aligned_cols=183 Identities=22% Similarity=0.294 Sum_probs=140.2
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHHHh-cc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLR-RH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r-~~ 264 (382)
|+++|++++|++ .++++|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.++...+....+ +.
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 689999999975 35999999999999999999999999999999999994 69999999999999877766554 57
Q ss_pred eEEecCCCccccc-cHHHHHcCC-------CCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYR-------DLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~-------~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
++|++|++.++.. |..+++.+. ......+. +.+.+.++.. .+|+++.+... ...|||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~~~LS~G~ 150 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLTRSV--NVGFSGGE 150 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcccCC--CCCCCHHH
Confidence 9999999987764 555544221 00000011 1111222222 23333333211 13799999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||++||||++++|++|||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii 200 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFII 200 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999998865 578764
No 279
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.3e-38 Score=321.35 Aligned_cols=182 Identities=26% Similarity=0.331 Sum_probs=147.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-Hhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 265 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 36999999999999999999999999999999999999999999999999987655444 35679
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC----CCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT----KIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~----~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+|++|++.+|.. |++||+.++.... ..+.+ ++.++++..+ +.........+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLN-----------LRFSSDKLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcC-----------CCCCccCchhhCCHHHHHHH
Confidence 999999998865 9999998753210 11222 2233333333 33333344578999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii 196 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVY 196 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999998754 567664
No 280
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-37 Score=272.97 Aligned_cols=135 Identities=39% Similarity=0.513 Sum_probs=124.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i~ 266 (382)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 699999999999999999999999999999999999999999999999999887653 4577899
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
|++| ||||||||++||||++++|
T Consensus 79 ~~~q---------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 79 MVYQ---------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEe---------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 9999 9999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+++||||||++||..+.+.+.+.|+++.+ ++|+|+
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 137 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF 137 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999998853 677764
No 281
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.2e-37 Score=288.24 Aligned_cols=161 Identities=34% Similarity=0.424 Sum_probs=132.9
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-ccHHHHH
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENI 283 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi 283 (382)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|++|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999987 5999999
Q ss_pred cCCCC--CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCC
Q 016798 284 GYRDL--MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357 (382)
Q Consensus 284 ~~~~~--~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~ 357 (382)
.++.. ....++ +++.+.++..++.++.+. ....||||||||++||||++.+|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 76411 011222 234555666666554433 3478999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhC--CCceec
Q 016798 358 LDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 358 LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~ 170 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLM 170 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999998753 577764
No 282
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.9e-37 Score=287.98 Aligned_cols=175 Identities=26% Similarity=0.365 Sum_probs=143.8
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 46788774 17999999999999999999999999999999999995 599999999999888877888889999
Q ss_pred cCCCcc-ccccHHHHHcCCCCCCCCC---HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 269 SQDITL-FSGTVAENIGYRDLMTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 269 ~Q~~~l-f~~ti~eNi~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++.+ +..|++||+.++....... .+++.++++..++.+.. ......||||||||++||||++.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhc
Confidence 999865 4679999998764211101 23445555555554433 33457999999999999999997
Q ss_pred -------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 345 -------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 -------~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~ 188 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVM 188 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 679999999999999999999999999886 4677764
No 283
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.1e-37 Score=315.56 Aligned_cols=177 Identities=25% Similarity=0.284 Sum_probs=151.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8899999999753 59999999999999999999999999999999999999999999999988876666667778999
Q ss_pred ecCCCcc--c-------cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 268 VSQDITL--F-------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 268 v~Q~~~l--f-------~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++|++.+ + ..|++||+.++. ...+++.++++..++.+..+.. ...||||||||++|
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 146 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV----KDPARCEQLAQQFGITALLDRR-----------FKYLSTGETRKTLL 146 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch----hHHHHHHHHHHHcCCHhhhhCC-----------cccCCHHHHHHHHH
Confidence 9999753 2 458999886532 1245667777777776654443 47999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii 190 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL 190 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999999999999999999999864 567764
No 284
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-37 Score=321.75 Aligned_cols=184 Identities=29% Similarity=0.350 Sum_probs=150.3
Q ss_pred cEEEEeEEEEeCCC---------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC
Q 016798 187 DVKFCNISFKYADN---------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (382)
Q Consensus 187 ~i~~~~v~f~y~~~---------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~ 257 (382)
-|+++||++.|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 48999999999621 135899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhcceEEecCCCc--ccc-ccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChH-HHHHhCCCCcccccCCCC
Q 016798 258 LD---SLRRHVGLVSQDIT--LFS-GTVAENIGYRDLMTKI-D----MERVEHTARTANAD-EFVRTLPQGYNTHIGPRG 325 (382)
Q Consensus 258 ~~---~~r~~i~~v~Q~~~--lf~-~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G 325 (382)
.. .+|++|+||+|+|. +++ .|+.||+.+....... + .+++.+.++.+++. +..+.. .
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----------~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-----------P 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-----------c
Confidence 43 35678999999984 665 4999999753110011 1 23455666666663 344433 3
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+||||||||++|||||+.+|++|||||||++||..+..++.+.|+++.+ +.|+|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~ 519 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF 519 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 78999999999999999999999999999999999999999999998864 577764
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=316.41 Aligned_cols=183 Identities=26% Similarity=0.377 Sum_probs=147.0
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcceEEe
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHVGLV 268 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v 268 (382)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999974 369999999999999999999999999999999999999999999999999876554 3456789999
Q ss_pred cCCCcccc-ccHHHHHcCCCC-CCC--CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 269 SQDITLFS-GTVAENIGYRDL-MTK--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 269 ~Q~~~lf~-~ti~eNi~~~~~-~~~--~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++.+|. .|++||+.++.. ... .+.++..+ .+.++++.+ |++........+||||||||++|||||++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99998875 499999987531 111 12222111 122334443 44444455678999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|++|||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 189 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVY 189 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999875 3577764
No 286
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-37 Score=263.73 Aligned_cols=178 Identities=31% Similarity=0.413 Sum_probs=148.8
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HH
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~ 261 (382)
-|++++++.+.+.+ +..+|++|+|.|++||.+|||||||||||||+-+++|+-+|++|+|.+.|+++..++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47788888877654 34689999999999999999999999999999999999999999999999999998865 34
Q ss_pred h-cceEEecCCCccc-cccHHHHHcCCCCCCC--C--CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 R-RHVGLVSQDITLF-SGTVAENIGYRDLMTK--I--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 r-~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~--~--~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
| +++|+|+|..+|. +.|-.||+..-..... . ..+...+.++.+++.+-+.+.| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 4 5799999999987 5599999975322111 1 1233456666776666665555 8999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
+||||||...|+||+-||||-+||.+|-.+|.+.+-.+-.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr 194 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999877654
No 287
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.6e-37 Score=313.38 Aligned_cols=185 Identities=27% Similarity=0.396 Sum_probs=146.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHH-Hhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDS-LRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~~ 264 (382)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .++.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 689999999964 3599999999999999999999999999999999999987 7999999999998776544 4567
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCC----CCCHHHHHHHHHHcChHHHHHhCCCCccccc-CCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMT----KIDMERVEHTARTANADEFVRTLPQGYNTHI-GPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~----~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v-ge~G~~lSgGq~Qrial 338 (382)
++||+|++.+|.. |++||+.++.... ..+.++..+ .+.++++.+ |++... .....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999998865 9999998753211 011221111 112233332 222211 12356899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 196 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999998754 567764
No 288
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=269.11 Aligned_cols=173 Identities=27% Similarity=0.405 Sum_probs=147.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.+.++++|.+|++...++|+|+|++|.+||.++++||||||||||+++++|+.+|..|+|.+||.++..-..+ =|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 3567899999987666699999999999999999999999999999999999999999999999999764432 38
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
+|+|++-|++= |+.||+.||......+..+ ..+.+..+++.++-.+ ...+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~-----------~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHK-----------YIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccccc-----------ceEeecchHHHHHHHHHH
Confidence 99999999976 9999999986555555432 2345556666554333 347999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
|.-+|+.|+||||+++||.-|++++++.|-++++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~ 180 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988764
No 289
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.7e-37 Score=283.20 Aligned_cols=168 Identities=27% Similarity=0.304 Sum_probs=133.4
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC----CCceEEEcCEeCCCCCHHHHhcceEEecCCCc-cc-c-
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT-LF-S- 276 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf-~- 276 (382)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998654 223468999999995 34 3
Q ss_pred ccHHHHHcCCCCCCC----CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEe
Q 016798 277 GTVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352 (382)
Q Consensus 277 ~ti~eNi~~~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililD 352 (382)
.|+.||+.+...... ...+++.+.++.+++.+ + ++........||||||||++||||++++|+++|||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 489999854211000 11234555666655531 1 12344456899999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 353 EATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||++||..+.+.+.+.|+++.+ ++|+|+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 181 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILL 181 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999998864 677764
No 290
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=267.52 Aligned_cols=176 Identities=30% Similarity=0.429 Sum_probs=153.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+.+|+|++-.++ .+|+++||++++||..||+||||||||||+|.|+|...|++|++.+||.++.+++..++.++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 6789999988653 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcc-ccccHHHHHcCCCCCC----CCCHHH--HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 268 VSQDITL-FSGTVAENIGYRDLMT----KIDMER--VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 268 v~Q~~~l-f~~ti~eNi~~~~~~~----~~~~~~--~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+||+..+ |+-|++|-+.+|+... +..+++ ..+++.++++..+-.+ .-..|||||+||+.+||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHHH
Confidence 9999997 8999999999986322 111333 5678888888776543 34789999999999999
Q ss_pred HccC------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 341 ALYQ------NSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 341 all~------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
.|.+ ++++|+||||||+||...+..+++..+++.++
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~ 190 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE 190 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc
Confidence 9965 34589999999999999999999999998653
No 291
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-37 Score=313.31 Aligned_cols=184 Identities=17% Similarity=0.301 Sum_probs=144.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 265 (382)
-|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.+
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999998762 38999999999999999999999999999999999999999999999999865543 3557789
Q ss_pred EEecCCC---ccccc-cHHHHHcCCCCCC--------C-CCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChH
Q 016798 266 GLVSQDI---TLFSG-TVAENIGYRDLMT--------K-IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGG 331 (382)
Q Consensus 266 ~~v~Q~~---~lf~~-ti~eNi~~~~~~~--------~-~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgG 331 (382)
+||+|++ .+|+. |++||+.++.... . .+..+. ...+.++++.+ |+. .........||||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSGG 413 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCChH
Confidence 9999984 57754 9999998753100 0 011110 01122333333 332 2234445789999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~ 464 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILM 464 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999999999999875 4677764
No 292
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-37 Score=282.90 Aligned_cols=184 Identities=30% Similarity=0.480 Sum_probs=159.8
Q ss_pred cEEEEeEEEEeCCCC----------------------CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc
Q 016798 187 DVKFCNISFKYADNM----------------------PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~----------------------~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G 244 (382)
.|+++||++-|+.+. ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 577788877775420 1237899999999999999999999999999999999999999
Q ss_pred eEEEcCEeCCCCCHHHHh----cceEEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCC
Q 016798 245 CILVDDHDVQNIRLDSLR----RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQ 315 (382)
Q Consensus 245 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~ 315 (382)
+|+++|.|+..++.+++| +++++|+|..-||+- ||.||..||......+. +...++++.++|++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988764 469999999999966 99999999976555543 34567888999999998887
Q ss_pred CcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 316 Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+||||++||+.|||||..||+||++|||+|+|||--+..+++.|.++.+ +||+++
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvF 220 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVF 220 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEE
Confidence 79999999999999999999999999999999999999999999877653 678875
No 293
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.1e-36 Score=311.98 Aligned_cols=187 Identities=26% Similarity=0.331 Sum_probs=147.9
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~ 259 (382)
-|+++|++++|+++ ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999742 24699999999999999999999999999999999999987 799999999999876643
Q ss_pred H---Hh-cceEEecCCCc--ccc-ccHHHHHcCCCC-CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCC
Q 016798 260 S---LR-RHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (382)
Q Consensus 260 ~---~r-~~i~~v~Q~~~--lf~-~ti~eNi~~~~~-~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~ 327 (382)
+ +| ++++|++|++. +++ .|+++|+.+... ....+ .+++.++++.+++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3 33 57999999986 444 489999863210 00111 244556666666643110 11233479
Q ss_pred CChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 328 lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~ 212 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLF 212 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999999999753 678764
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.3e-36 Score=313.05 Aligned_cols=188 Identities=24% Similarity=0.392 Sum_probs=145.4
Q ss_pred cEEEEeEEEEeCC---CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc-CEe---CCCCC--
Q 016798 187 DVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD-DHD---VQNIR-- 257 (382)
Q Consensus 187 ~i~~~~v~f~y~~---~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~-g~~---~~~~~-- 257 (382)
-|+++|++++|++ +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 22469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 258 -LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 258 -~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
...+|++++|++|++.+|+. |++||+.+.... ..+ .+++.++++..++.+. ..+........+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHH
Confidence 22456789999999998865 999999753110 011 1234445555554210 0000123345789999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~ 483 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII 483 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 99999999999999999999999999999999999999998853 577764
No 295
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.7e-36 Score=312.23 Aligned_cols=181 Identities=24% Similarity=0.405 Sum_probs=143.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEc----------------
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVD---------------- 249 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~---------------- 249 (382)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999964 36999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---HHHHhcceEEecCC-Ccccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcCh
Q 016798 250 -------DHDVQ-------NIR---LDSLRRHVGLVSQD-ITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANA 306 (382)
Q Consensus 250 -------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l 306 (382)
|.++. ..+ ...+|+.++|++|+ +.+|+ .|++||+.++......+ .+++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 32221 111 12457789999998 57776 49999997642111122 2345556666666
Q ss_pred HHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 307 ~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+..++ ...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 159 ~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 159 SHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred hhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 554433 3478999999999999999999999999999999999999999999999853 678764
No 296
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.3e-36 Score=313.63 Aligned_cols=183 Identities=30% Similarity=0.374 Sum_probs=147.4
Q ss_pred cEEEEeEEEEeCC---------CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC
Q 016798 187 DVKFCNISFKYAD---------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (382)
Q Consensus 187 ~i~~~~v~f~y~~---------~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~ 257 (382)
-|+++|++++|+. +...+|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 4899999999962 1246899999999999999999999999999999999999 58999999999987765
Q ss_pred HHH---HhcceEEecCCC--cccc-ccHHHHHcCCCCCC--CCC----HHHHHHHHHHcChH-HHHHhCCCCcccccCCC
Q 016798 258 LDS---LRRHVGLVSQDI--TLFS-GTVAENIGYRDLMT--KID----MERVEHTARTANAD-EFVRTLPQGYNTHIGPR 324 (382)
Q Consensus 258 ~~~---~r~~i~~v~Q~~--~lf~-~ti~eNi~~~~~~~--~~~----~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~ 324 (382)
... +|++++|++|++ .+|+ .|++||+.++.... ..+ ++++.++++..++. +... ..
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH-----------RY 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh-----------cC
Confidence 433 467899999998 3665 49999997642100 011 23344555555553 2332 34
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
..+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 481 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLF 481 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 478999999999999999999999999999999999999999999998853 678764
No 297
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=311.21 Aligned_cols=188 Identities=23% Similarity=0.322 Sum_probs=146.2
Q ss_pred cEEEEeEEEEeCC-CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-CCCceEEEcCEeCCCCCH-HHHhc
Q 016798 187 DVKFCNISFKYAD-NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIRL-DSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~-~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-~~~G~i~~~g~~~~~~~~-~~~r~ 263 (382)
-|+++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+. ..+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953 23469999999999999999999999999999999999998 599999999999865443 34567
Q ss_pred ceEEecCCC---cccc-ccHHHHHcCCCC--CCC---CCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHHH
Q 016798 264 HVGLVSQDI---TLFS-GTVAENIGYRDL--MTK---IDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQR 333 (382)
Q Consensus 264 ~i~~v~Q~~---~lf~-~ti~eNi~~~~~--~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq~ 333 (382)
.++|++|++ .+|. .|+.||+.++.. ... .+.++. ...+.++++.+ |++. .......+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 3664 599999986421 000 111111 11123334443 3321 23445679999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~ 460 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIV 460 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999998754 677764
No 298
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=315.74 Aligned_cols=187 Identities=27% Similarity=0.314 Sum_probs=146.8
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC----------
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ---------- 254 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~---------- 254 (382)
-|+++|++++|+.. ..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 58999999999642 236999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEecCCC--cccc-ccHHHHHcCCCCC-CCCCH----HHHHHHHHHcChHHHHHhCCCCcccccC
Q 016798 255 NIRLD---SLR-RHVGLVSQDI--TLFS-GTVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIG 322 (382)
Q Consensus 255 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~ti~eNi~~~~~~-~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vg 322 (382)
+.+.. .+| +.|+||+|+| .+++ .|++||+.++... ...+. +++.++++.+++.+. +..+.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22222 233 4799999998 5776 4999999864210 01122 344455555555210 11223
Q ss_pred CCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
....+||||||||++|||||+.+|++|||||||++||+.+.+++.+.++++.+ ++|+|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~ 224 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIF 224 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 34579999999999999999999999999999999999999999999999863 677764
No 299
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.6e-36 Score=278.26 Aligned_cols=170 Identities=24% Similarity=0.290 Sum_probs=131.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
+.+++++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 677888888875 4699999999999999999999999999999999999999999999999876321 11111
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
...+.|++||+.++......+.+ ++.++++..++.+.. + .....||||||||++||||++
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------D----LPVKTYSSGMKARLAFAIATA 158 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-------h----CChhhCCHHHHHHHHHHHHHh
Confidence 12356999999764321111222 233444444443332 2 234689999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii 197 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL 197 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999998754 467763
No 300
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.6e-36 Score=339.65 Aligned_cols=184 Identities=26% Similarity=0.376 Sum_probs=155.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++||+++|+++++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996434569999999999999999999999999999999999999999999999999865 456778899
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
||+||++.+|+. |++||+.+.......+ ++++.+.++.+++.+.. .....+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999965 9999998642211122 23455556666554433 3445899999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+.+|+++|||||||+||+.+++.+.+.|+++.+++|+|+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIl 1115 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIM 1115 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999988888874
No 301
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=8e-36 Score=313.80 Aligned_cols=184 Identities=36% Similarity=0.479 Sum_probs=152.5
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH---
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL--- 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~--- 261 (382)
-|+++|++++|+++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999742 2469999999999999999999999999999999999999999999999999998877654
Q ss_pred -hcceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 -RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 -r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
|+.++|++|++.+|+. |+.||+.+.......+ +++..+.++..++.++ +.....+|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-----------~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDR-----------VEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hcCCcccCCHHHHHH
Confidence 5689999999999975 9999997632111111 1233444555555444 444457999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++|||||+++|+++||||||++||..+.+.+.+.++++.+ ++|+|.
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tili 199 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVII 199 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999998864 677763
No 302
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.2e-36 Score=280.40 Aligned_cols=163 Identities=25% Similarity=0.379 Sum_probs=132.6
Q ss_pred EEeCCCCCCccceeeEEee-----CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 195 FKYADNMPLVLDQLNLHIR-----AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 195 f~y~~~~~~~l~~isl~i~-----~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
|+|++.. ..++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 5787543 48899999997 68999999999999999999999999999999999984 589999
Q ss_pred CCCcc-ccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCE
Q 016798 270 QDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (382)
Q Consensus 270 Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~i 348 (382)
|++.. +..|++||+.+.........+...++++..++.+.. .....+||||||||++|||||+++|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99984 678999999653221111123344556665554443 334578999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 349 LILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 349 lilDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 171 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFV 171 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999854 677764
No 303
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.5e-36 Score=300.22 Aligned_cols=184 Identities=35% Similarity=0.434 Sum_probs=148.7
Q ss_pred CcEEEEeEEEEeCCC---------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe--CC
Q 016798 186 GDVKFCNISFKYADN---------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD--VQ 254 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~---------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~--~~ 254 (382)
.-++++|++++|... ...+++||||++++||++||||+||||||||.++|+|+++|++|+|.++|.+ ..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 357899999999841 2467999999999999999999999999999999999999999999999987 22
Q ss_pred CCCHHHHhcceEEecCCCcc--c-cccHHHHHcCCC----CCC-CCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCC
Q 016798 255 NIRLDSLRRHVGLVSQDITL--F-SGTVAENIGYRD----LMT-KIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRG 325 (382)
Q Consensus 255 ~~~~~~~r~~i~~v~Q~~~l--f-~~ti~eNi~~~~----~~~-~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G 325 (382)
.-+....|+.+-+|+|||+- - ..||+++|.-.. ... ..-.+.+.+.++.+++.+ +..+.|
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP----------- 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP----------- 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------
Confidence 22344567899999999984 3 459999996321 110 011234666788887764 455544
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC--Ccee
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVR 380 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~TvI 380 (382)
.+||||||||+||||||..+|+++|+|||||+||+.+..+|.+.|+++.++ -|.+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~l 484 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYL 484 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEE
Confidence 899999999999999999999999999999999999999999999988653 4544
No 304
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=274.70 Aligned_cols=180 Identities=28% Similarity=0.446 Sum_probs=151.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh-cceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~i~ 266 (382)
+++++++.+|++ -.+++||||++++||++||+|||||||||++++|.|+|+|++|+|.++|.|+..+++.... ..|+
T Consensus 5 L~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 678999999976 3589999999999999999999999999999999999999999999999999999988764 4699
Q ss_pred EecCCCccccc-cHHHHHcCCCCCC----------CC--CH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMT----------KI--DM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~----------~~--~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
--+|.+.+|++ |+.||+..+.... .. .+ ++..+.++.+ |++-.-.+...+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----------gL~~~a~~~A~~Ls 151 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----------GLGELADRPAGNLS 151 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----------CCchhhcchhhcCC
Confidence 99999999976 9999998652100 00 11 1222333333 55555566678999
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC--Ccee
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVR 380 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~TvI 380 (382)
+||++|+.|||||+.+|++|+||||.+|+.+.....+.+.|+++.++ .|++
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~til 204 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTIL 204 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEE
Confidence 99999999999999999999999999999999999999999999863 5654
No 305
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=261.15 Aligned_cols=181 Identities=33% Similarity=0.458 Sum_probs=153.7
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC---------
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--------- 256 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~--------- 256 (382)
..++++|++++|+.. .+|++|||+.++|+.+.|+|.|||||||+++||.=+-.|+.|+|.++|..++-.
T Consensus 5 ~~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 5 NALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred cceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 368899999999864 599999999999999999999999999999999999999999999999987422
Q ss_pred ----CHHHHhcceEEecCCCccccc-cHHHHHcC------CCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCC
Q 016798 257 ----RLDSLRRHVGLVSQDITLFSG-TVAENIGY------RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (382)
Q Consensus 257 ----~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~------~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G 325 (382)
....+|.+.++|+|+..|++- |+.||+.- |.+.. .--+..+..+.++|+.+--+..|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~-ea~e~Ae~~L~kVGi~ek~~~YP----------- 150 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA-EAIERAEKYLAKVGIAEKADAYP----------- 150 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHH-HHHHHHHHHHHHhCchhhhhcCc-----------
Confidence 134668899999999999965 99999863 22210 01234455677888887776666
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCcee
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI 380 (382)
..|||||+||+||||||.-+|+++++|||||+||++-.-++++.++++. .+||++
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv 206 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMV 206 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEE
Confidence 8999999999999999999999999999999999999999999999987 478875
No 306
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.1e-36 Score=307.97 Aligned_cols=184 Identities=22% Similarity=0.325 Sum_probs=145.3
Q ss_pred cEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEEcCEeCCCCCH-HHHhc
Q 016798 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNIRL-DSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~~g~~~~~~~~-~~~r~ 263 (382)
-|+++|++++|+++ +..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999432 23599999999999999999999999999999999999995 89999999999865433 45678
Q ss_pred ceEEecCCC---cccc-ccHHHHHcCCCCC--C---CCCH----HHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCC
Q 016798 264 HVGLVSQDI---TLFS-GTVAENIGYRDLM--T---KIDM----ERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLS 329 (382)
Q Consensus 264 ~i~~v~Q~~---~lf~-~ti~eNi~~~~~~--~---~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lS 329 (382)
+++|++|++ .+|+ .|++||+.++... . ..+. +++.++++..++ .. ........||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LS 405 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV-----------KTASPFLPIGRLS 405 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCc-----------cCCCccCccccCC
Confidence 899999996 4665 5999999875210 0 0111 123333333332 21 1233457899
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 458 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIV 458 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999999988754 577764
No 307
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-35 Score=312.16 Aligned_cols=169 Identities=30% Similarity=0.441 Sum_probs=139.6
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC--CceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-c
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL--SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-T 278 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~--~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-t 278 (382)
+.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.. ..+++++||+|++.+|+. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999885 8999999998742 356679999999999964 9
Q ss_pred HHHHHcCCCCC---CCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCC-CCCCChHHHHHHHHHHHccCCCCEEE
Q 016798 279 VAENIGYRDLM---TKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQNSSVLI 350 (382)
Q Consensus 279 i~eNi~~~~~~---~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~-G~~lSgGq~QrialaRall~~~~ili 350 (382)
++||+.+.... ...++++ +.+.++..++ ++..||.+|+. ...||||||||++|||+|+.+|+|++
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999864211 1223332 2333333333 33458888764 68999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 351 LDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||++||+.++..+.+.|+++. +++|+|.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~ 261 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999986 4788874
No 308
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.9e-36 Score=275.68 Aligned_cols=156 Identities=33% Similarity=0.461 Sum_probs=129.1
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcc---ccccHHHHHcCC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL---FSGTVAENIGYR 286 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~ti~eNi~~~ 286 (382)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+++++|++|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 346789999999986 457999999764
Q ss_pred CC-----C---CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCC
Q 016798 287 DL-----M---TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358 (382)
Q Consensus 287 ~~-----~---~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~L 358 (382)
.. . ...+++++.++++..++.++.+. ...+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-----------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 0 00122456667777776554433 34679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhC-CCceec
Q 016798 359 DSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 359 D~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|+.+.+.+.+.|+++.+ ++|+|+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii 168 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILM 168 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999998864 678764
No 309
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-35 Score=292.17 Aligned_cols=183 Identities=34% Similarity=0.415 Sum_probs=151.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-ce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i 265 (382)
-++++|++++|++- ++|+||||++++||++||+|+||||||||+|+|+|.|+|++|+|.+||.++.-.++.+-++ -|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48899999999863 6999999999999999999999999999999999999999999999999998777776554 59
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCC----CCHHHHHHHHHHcChHHHHHhCC--CCcccccCCCCCCCChHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLP--QGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp--~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+.|.||..|++. ||.|||.+|+.... .+..+..+..+. .+..+- ...++++ .+||+||||.++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v----~~LsiaqrQ~VeI 156 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLV----GDLSIAQRQMVEI 156 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhh----hhCCHHHHHHHHH
Confidence 999999999965 99999998875322 233333322221 222221 1245555 5899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCcee
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI 380 (382)
|||+..+++|+|||||||+|+....+.+.+.+++++ ++.++|
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii 199 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAII 199 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999999999999999999997 466665
No 310
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-35 Score=311.18 Aligned_cols=173 Identities=29% Similarity=0.386 Sum_probs=142.8
Q ss_pred CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCCHHHHhcceEEecCCCccccc
Q 016798 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277 (382)
Q Consensus 201 ~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 277 (382)
++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||.++. ...+|+.++||+|++.+|+.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 457999999999999999999999999999999999999885 799999999875 35678899999999999955
Q ss_pred -cHHHHHcCCCCCC---CCCHHHHHHHHHHcChHHHHHh--CCCCcccccCCC--CCCCChHHHHHHHHHHHccCCCCEE
Q 016798 278 -TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRT--LPQGYNTHIGPR--GSSLSGGQRQRLAIARALYQNSSVL 349 (382)
Q Consensus 278 -ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~i~~--lp~Gldt~vge~--G~~lSgGq~QrialaRall~~~~il 349 (382)
||+||+.++.... ..+.++. ....++.++. +++..||.+|+. +..||||||||++|||+|+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 9999998753211 1222221 1112333333 345679999985 4899999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 350 ILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 350 ilDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+||||||+||+.+...+.+.|+++.+ ++|+|.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~ 221 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIIC 221 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999864 678763
No 311
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=6.3e-36 Score=254.14 Aligned_cols=136 Identities=48% Similarity=0.769 Sum_probs=125.0
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHH
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI 283 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi 283 (382)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.+|++ |++||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999999999999999999998888999999999999999987 699991
Q ss_pred cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC
Q 016798 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts 356 (382)
.++++.++++..++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 81 ---------~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 ---------SDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ---------HHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ---------cccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3667888888887754 35677888889999999999999999999999999999996
No 312
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.2e-35 Score=331.14 Aligned_cols=184 Identities=25% Similarity=0.379 Sum_probs=153.8
Q ss_pred cEEEEeEEEEeCC--CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC---CCCceEEEcCEeCCCCCHHHH
Q 016798 187 DVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~--~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 261 (382)
.++++||+++|+. +.+.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.+||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 3789999999962 23569999999999999999999999999999999999998 68899999999984 247
Q ss_pred hcceEEecCCCcc-ccccHHHHHcCCCCC---CCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 262 RRHVGLVSQDITL-FSGTVAENIGYRDLM---TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 262 r~~i~~v~Q~~~l-f~~ti~eNi~~~~~~---~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
|+.++||+|++.+ +..|++||+.++... ...++ +.+.++++..++.+ -.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 8899999999765 466999999864211 11233 23455666665543 468899998899999999
Q ss_pred HHHHHHHHccCCCC-EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 334 QRLAIARALYQNSS-VLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~-ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||++|||||+.+|+ ||+||||||+||+.+...+++.|+++. +++|+|.
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~ 957 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999997 999999999999999999999999984 5688774
No 313
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.7e-35 Score=331.52 Aligned_cols=184 Identities=19% Similarity=0.298 Sum_probs=154.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
.-|+++|++++|+++...+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.. +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 3599999999997533569999999999999999999999999999999999999999999999999865 455678899
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
||+||++.+++. |++||+.+.....+.+. +.+.++++.+++.++.++. ...||||||||+++||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-----------~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-----------AGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999864 99999975321112222 2344567777776655443 4789999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||+.+|+|++|||||+|||+.+++.+.+.|+++. +++|+|.
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIIL 2125 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVL 2125 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999975 4678764
No 314
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-35 Score=275.56 Aligned_cols=156 Identities=23% Similarity=0.307 Sum_probs=125.8
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-ccHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 280 (382)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++++|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 35899999999999999999999999999999999999999999999984 456788877764 5999
Q ss_pred HHHcCCCCCCCCCHHHHH----HHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC
Q 016798 281 ENIGYRDLMTKIDMERVE----HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~----~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts 356 (382)
||+.++......+.++.. .+++..++.++ +......||||||||++||||++.+|++|||||||+
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~ 172 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALS 172 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccc
Confidence 999764211122333332 33444444433 334567999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 357 ALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 357 ~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+||+.+.+.+.+.|.++. .++|+|+
T Consensus 173 gLD~~~~~~l~~~L~~~~~~g~tiIi 198 (264)
T PRK13546 173 VGDQTFAQKCLDKIYEFKEQNKTIFF 198 (264)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999998875 3677764
No 315
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.5e-35 Score=277.90 Aligned_cols=176 Identities=26% Similarity=0.327 Sum_probs=137.8
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE-----------EcCEeCCCCCHHH
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNIRLDS 260 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~-----------~~g~~~~~~~~~~ 260 (382)
+|+|+|+.+ ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.+.....
T Consensus 5 ~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 5 EPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred CcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 789999753 358999994 999999999999999999999999999999999996 8888886654333
Q ss_pred Hhc--ceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 261 LRR--HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 261 ~r~--~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
.+. .+++++|++.+++.++.+|+...-.. ....+.+.++++..++.+ .+.....+||||||||++|
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKK-KDERGKLDELVDQLELRH-----------VLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhch-hHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHH
Confidence 332 47888888877765555555432111 112344555565555443 3444567999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIi 194 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999998864 577764
No 316
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=302.82 Aligned_cols=181 Identities=25% Similarity=0.382 Sum_probs=142.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 265 (382)
-++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 488999984 379999999999999999999999999999999999999999999999998766543 456789
Q ss_pred EEecCCC---cccc-ccHHHHHcCCCCC--CC----CCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHH
Q 016798 266 GLVSQDI---TLFS-GTVAENIGYRDLM--TK----IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (382)
Q Consensus 266 ~~v~Q~~---~lf~-~ti~eNi~~~~~~--~~----~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Q 334 (382)
+||+|++ .+|. .|++||+.++... .. .+.++.. ..+.++++.+ |+. .........|||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence 9999997 3554 5999999764210 00 1111111 1122334433 332 2344556789999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii 450 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999999999863 677764
No 317
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=301.60 Aligned_cols=182 Identities=25% Similarity=0.354 Sum_probs=141.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 265 (382)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++++
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 4889999742 38999999999999999999999999999999999999999999999999865433 3456789
Q ss_pred EEecCCCc---ccc-ccHHHHHcCCCCCC----C--CCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHH
Q 016798 266 GLVSQDIT---LFS-GTVAENIGYRDLMT----K--IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (382)
Q Consensus 266 ~~v~Q~~~---lf~-~ti~eNi~~~~~~~----~--~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Q 334 (382)
+|++|++. +|. .|+.||+.++.... . .+..+. .....+++..+ |++ ........+|||||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHHH
Confidence 99999973 564 69999998653110 0 011110 01122334333 332 2233445799999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++||||++.+|++|||||||++||..+.+.+.+.|+++.+ +.|+|+
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 451 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLF 451 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999988764 577764
No 318
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-35 Score=273.82 Aligned_cols=182 Identities=28% Similarity=0.438 Sum_probs=145.7
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-C----CCceEEEcCEeCCCCCHHH
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-P----LSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-~----~~G~i~~~g~~~~~~~~~~ 260 (382)
++++|++..|.... ..+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|.|+..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899998887532 468999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred ---Hh-cceEEecCCCcc-c-cc-cHHHHH----cCCCCC--CCCCHHHHHHHHHHcChHH---HHHhCCCCcccccCCC
Q 016798 261 ---LR-RHVGLVSQDITL-F-SG-TVAENI----GYRDLM--TKIDMERVEHTARTANADE---FVRTLPQGYNTHIGPR 324 (382)
Q Consensus 261 ---~r-~~i~~v~Q~~~l-f-~~-ti~eNi----~~~~~~--~~~~~~~~~~~~~~~~l~~---~i~~lp~Gldt~vge~ 324 (382)
+| +.|++|+|||.- | +. ||.+-+ ...... ...-.++..+.++.+++.+ .+++.|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 34 369999999862 3 22 555444 322110 0001345677788888764 445555
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
.+||||||||+.||-|++.+|++||.||||+|||..++.+|++.|+++.+ +.|+|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aii 208 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALI 208 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEE
Confidence 89999999999999999999999999999999999999999999999875 44554
No 319
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=7.5e-35 Score=284.58 Aligned_cols=186 Identities=32% Similarity=0.441 Sum_probs=154.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 265 (382)
.+++++++++||+ ..+.+||||+|++||+.||.|+||||||||+++|.|+|+|++|+|.+||+++.=-++. ..|..|
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5899999999994 4689999999999999999999999999999999999999999999999998765555 556679
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC---CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|+|.|++.|++. |+.|||.+|.+.. ..+..+..+. +.+..++. |++-...+...+||-|||||+.|-+|
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~-----i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-----IKELSERY--GLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHH-----HHHHHHHh--CCCCCccceeecCCcchhHHHHHHHH
Confidence 999999999977 9999999987421 1122222211 22233332 55555556678999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|+++|++||||||||-|-+.....+.+.++++. .++|+|.
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ 195 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIF 195 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999986 4788874
No 320
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=299.28 Aligned_cols=177 Identities=24% Similarity=0.378 Sum_probs=135.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 789999999974 36999999999999999999999999999999999999999999999872 36999
Q ss_pred ecCCCccccc-cHHHHHcCCCCC--------------CCCCHH---HHHHHH----------HHcChHHHHHhCCCCccc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLM--------------TKIDME---RVEHTA----------RTANADEFVRTLPQGYNT 319 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~--------------~~~~~~---~~~~~~----------~~~~l~~~i~~lp~Gldt 319 (382)
++|++.+|.. |++||+.++... .....+ .+.+.. ....+.+.++.+ |++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~ 146 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE 146 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence 9999988865 999999764210 000000 000000 001122333333 3332
Q ss_pred cc-CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HI-GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~v-ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.. .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++ .+.|+|+
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiii 207 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMII 207 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEE
Confidence 22 234579999999999999999999999999999999999999999999975 3677764
No 321
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.6e-35 Score=298.89 Aligned_cols=182 Identities=26% Similarity=0.311 Sum_probs=142.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEEcCEeCCC-CCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQN-IRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~~g~~~~~-~~~~~~r~~ 264 (382)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|++
T Consensus 260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 5999999999974 3589999999999999999999999999999999999876 69999999987632 233346778
Q ss_pred eEEecCCCcccc---ccHHHHHcCCCC-----CCCCC---HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 265 VGLVSQDITLFS---GTVAENIGYRDL-----MTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 265 i~~v~Q~~~lf~---~ti~eNi~~~~~-----~~~~~---~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
++|++|++.++. .|+++++.++.. ..... .+++.++++..++.+. .......+||||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 407 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQQ 407 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHHH
Confidence 999999987642 467777643210 00111 2344555555555430 22334578999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CC-cee
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HH-TVR 380 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~-TvI 380 (382)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++ |+|
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tvi 456 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLL 456 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEE
Confidence 999999999999999999999999999999999999999864 34 455
No 322
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.6e-34 Score=248.29 Aligned_cols=122 Identities=35% Similarity=0.560 Sum_probs=113.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.+||. ..++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999984 47999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++| ||+||+||++||||++++|+
T Consensus 68 ~~~---------------------------------------------------------lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 68 FEQ---------------------------------------------------------LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred Ecc---------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 998 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||..+...+.+.++++ ++|+|+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~ 122 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVIL 122 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEE
Confidence 99999999999999999999999987 356653
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=297.43 Aligned_cols=168 Identities=24% Similarity=0.342 Sum_probs=140.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++.++
T Consensus 319 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIG 385 (530)
T ss_pred eEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEE
Confidence 5999999999975 3599999999999999999999999999999999999999999999987 24799
Q ss_pred EecCCCc--ccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 267 LVSQDIT--LFS-GTVAENIGYRDLMTKIDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 267 ~v~Q~~~--lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|++|++. +++ .|++||+.+... ...+++++.+.++..++. +..+ ....+||||||||++||||+
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQ-EGDDEQAVRGTLGRLLFSQDDIK-----------KSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhcc-CCccHHHHHHHHHHcCCChhHhc-----------CcccccCHHHHHHHHHHHHH
Confidence 9999984 443 599999864321 112345666777777662 3332 33579999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.|+++ +.|+|+
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~ 490 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIF 490 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEE
Confidence 9999999999999999999999999999887 347764
No 324
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=288.49 Aligned_cols=171 Identities=25% Similarity=0.331 Sum_probs=137.0
Q ss_pred cEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 187 DVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
.++++|++|+|+++. +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999997643 3689999999999999999999999999999999999999999999999752
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
++.+.+.+++ .|++||+.+.......+.++ +.++++.+++.++++. ....||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 1222334443 49999997642111223332 3456666666655544 34789999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIII 198 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFF 198 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999998753 577764
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-34 Score=300.33 Aligned_cols=178 Identities=24% Similarity=0.314 Sum_probs=137.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..++
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 58999999999722 4699999999999999999999999999999999999999999999874 24699
Q ss_pred EecCCCccccc-cHHHHHcCCCCC---------------CCCC---------HHHHHHHHHHc-------ChHHHHHhCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLM---------------TKID---------MERVEHTARTA-------NADEFVRTLP 314 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~---------------~~~~---------~~~~~~~~~~~-------~l~~~i~~lp 314 (382)
||+|+|.+|+. |++||+.++... .... .+++.+.++.+ .+.+.++.+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 152 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL- 152 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence 99999999865 999999764210 0000 01111111111 122233332
Q ss_pred CCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 315 ~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|+++. .|+|+
T Consensus 153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tvii 215 (556)
T PRK11819 153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVA 215 (556)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEE
Confidence 332 2344567899999999999999999999999999999999999999999999873 47653
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.8e-34 Score=297.59 Aligned_cols=178 Identities=24% Similarity=0.290 Sum_probs=140.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|+
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48899999999732 3699999999999999999999999999999999999999999999874 24699
Q ss_pred EecCCCccccc-cHHHHHcCCCCC----------------CCCC--------HHHHHHHHHHcChH-------HHHHhCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLM----------------TKID--------MERVEHTARTANAD-------EFVRTLP 314 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~----------------~~~~--------~~~~~~~~~~~~l~-------~~i~~lp 314 (382)
||+|+|.+|+. |++||+.++... .... .+++.++++.++.+ +.++.+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 150 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL- 150 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence 99999998864 999999864210 0001 12344444444432 233333
Q ss_pred CCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 315 ~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|+++. +|+|+
T Consensus 151 -~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIi 213 (552)
T TIGR03719 151 -RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVA 213 (552)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEE
Confidence 332 1344567999999999999999999999999999999999999999999998863 47653
No 327
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=271.07 Aligned_cols=339 Identities=16% Similarity=0.214 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 016798 26 VIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ-LIY 104 (382)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 104 (382)
+.+.+.+.+.+...++.+..+++...-.+...+.+.|--|+++..+....++..++..+...+.-....++..+.. +-+
T Consensus 242 i~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Y 321 (659)
T KOG0060|consen 242 INKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDY 321 (659)
T ss_pred HHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777788888888888888899999999998877766665555444332222111111111111 113
Q ss_pred HHHHHHHHHHHHHH----hCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-----
Q 016798 105 FGALFILCGGSLLV----SGGSFDGCSLVSFITS----LVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK----- 171 (382)
Q Consensus 105 ~~~~~~~~~g~~lv----~~g~~t~g~l~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~----- 171 (382)
++.++-.++-+.-+ ..+.++..++...+.. +..++..+..+.....++.+-.....||.++.+.-.+
T Consensus 322 lg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~ 401 (659)
T KOG0060|consen 322 LGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGS 401 (659)
T ss_pred HHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCC
Confidence 33222111100001 2345667776655433 3334455556666666666666667777765431110
Q ss_pred ---------ccC-------CCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHH
Q 016798 172 ---------VIE-------KPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235 (382)
Q Consensus 172 ---------~~~-------~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll 235 (382)
..+ .+......+....|++++|++.-|.+++.+++|+||+|+.|+.+.|.||||||||+|++.+
T Consensus 402 ~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvl 481 (659)
T KOG0060|consen 402 QECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVL 481 (659)
T ss_pred cchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHH
Confidence 000 0000111122357999999999987655677899999999999999999999999999999
Q ss_pred hhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCC-----CCCCCCHHHHHHHHHHcChHHHH
Q 016798 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD-----LMTKIDMERVEHTARTANADEFV 310 (382)
Q Consensus 236 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~l~~~i 310 (382)
.|+++-.+|++.--...- -+.+-|+||.|+.-.||+||-+.|-. .....+|+++.+.++.+++.+.+
T Consensus 482 ggLWp~~~G~l~k~~~~~--------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 482 GGLWPSTGGKLTKPTDGG--------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred hcccccCCCeEEecccCC--------CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 999999999997532110 03489999999999999999998752 12346789999999999999988
Q ss_pred HhCCCCcccccCCC-CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 311 RTLPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 311 ~~lp~Gldt~vge~-G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
++. +|+|+++--+ ...||+||+||+|+||-++.+|++-||||+|||+|.+.|..+.+.+++.
T Consensus 554 ~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 554 ERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred HHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 875 6999877544 7899999999999999999999999999999999999999999988875
No 328
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=287.92 Aligned_cols=185 Identities=25% Similarity=0.351 Sum_probs=148.3
Q ss_pred cEEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC----CceEEEcCEeCCCCCHHH
Q 016798 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL----SGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~----~G~i~~~g~~~~~~~~~~ 260 (382)
-++++|++..|.... ..+++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 589999999887543 25899999999999999999999999999999999999987 799999999998888765
Q ss_pred Hh----cceEEecCCCc-cccc--cHHHHHc----CCCCC-CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCC
Q 016798 261 LR----RHVGLVSQDIT-LFSG--TVAENIG----YRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (382)
Q Consensus 261 ~r----~~i~~v~Q~~~-lf~~--ti~eNi~----~~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~l 328 (382)
+| +.|+||+|+|. .++- ||.+-|. ..... .....++..+.++.+++.+-... .....+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 46999999997 4543 6666654 22111 11123455667777777554433 2234899
Q ss_pred ChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 329 SgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
|||||||+.||+||+.+|++||+||||++||..++.+|++.|+++.+ +-++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l 209 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVL 209 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 99999999999999999999999999999999999999999999873 34444
No 329
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=293.80 Aligned_cols=184 Identities=17% Similarity=0.297 Sum_probs=141.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 265 (382)
-|+++|++++| +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 58999999874 2489999999999999999999999999999999999999999999999999776544 346779
Q ss_pred EEecCCCc---ccc-ccHHHHHcCC-----CCCCC-CCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHH
Q 016798 266 GLVSQDIT---LFS-GTVAENIGYR-----DLMTK-IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (382)
Q Consensus 266 ~~v~Q~~~---lf~-~ti~eNi~~~-----~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Q 334 (382)
+|++|++. +|+ .|+.+|..+. ..... .+..+..+ ...++++.+ |+. -.......+|||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHHH
Confidence 99999963 565 4777763221 11001 11111111 122334433 221 1234556799999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++||||++.+|+||||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~ 446 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIII 446 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999999998875 4678774
No 330
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.2e-34 Score=294.43 Aligned_cols=181 Identities=24% Similarity=0.336 Sum_probs=141.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-Hhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 265 (382)
-|+++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.+
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 489999983 1699999999999999999999999999999999999999999999999998766554 45689
Q ss_pred EEecCCC---ccccc-cHHHHHcCCC---CCCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHHHHH
Q 016798 266 GLVSQDI---TLFSG-TVAENIGYRD---LMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 266 ~~v~Q~~---~lf~~-ti~eNi~~~~---~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Qria 337 (382)
+|+||++ .+|.. |+.||+.... ........+.. ..+.++++.+ |+. .........||||||||++
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHHH
Confidence 9999996 36654 9999985320 00000111111 1122334443 343 2344556789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIi 458 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999998854 677764
No 331
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=264.26 Aligned_cols=146 Identities=35% Similarity=0.507 Sum_probs=128.8
Q ss_pred cEEEEeEEEEeCCCC-------CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYADNM-------PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~-------~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~ 259 (382)
-++++|+++.|+... ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|.++|.++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478899999997532 25899999999999999999999999999999999999999999999999987665
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+ ..-.+++.+.++.+++.+ +..+.| .+||||||||++|
T Consensus 82 --------------------~----------~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~I 120 (268)
T COG4608 82 --------------------K----------EERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGI 120 (268)
T ss_pred --------------------h----------hHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHH
Confidence 1 112567889999999865 666666 7999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
||||+.+|+++++|||||+||...+.+|.+.++++.+
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~ 157 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988764
No 332
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=244.09 Aligned_cols=176 Identities=33% Similarity=0.488 Sum_probs=150.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC--CCC----CHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV--QNI----RLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~--~~~----~~~~ 260 (382)
.|++++++|.|+.. .+|-||+|+-+.||++.+.||||+|||||++.|.=+--|.+|+..|.|... ++. ...+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 58899999999764 689999999999999999999999999999999999999999999987643 332 2447
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
+|+.+|+|+|..++++- |+.||+.-..- -.+.++ .+..+.++...+.++.++.| ..|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence 89999999999999976 99999953210 011222 34456778888888888888 789999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
|+||||||+-+|++|++||||++||++-..++.+.|+++.+
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~ 189 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE 189 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999875
No 333
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=262.81 Aligned_cols=158 Identities=30% Similarity=0.448 Sum_probs=142.9
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC----CCHHHHhcceEEecCCCccccc-cHH
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDSLRRHVGLVSQDITLFSG-TVA 280 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~----~~~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (382)
=+++|+.+.-.++||-|+||||||||+|+|+|+..|++|.|.+||.-+.+ +...--+++||||+||..||+- ||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 36899998889999999999999999999999999999999999987644 3344457889999999999966 999
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
-|++||... .+.+++.++++..++.+.+++.| ..||||||||+||+|||+.+|++|++|||.|+||.
T Consensus 95 gNL~YG~~~--~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 95 GNLRYGMWK--SMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred cchhhhhcc--cchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 999999753 35678889999999999999988 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC
Q 016798 361 RSELLVRQAVDRLLGH 376 (382)
Q Consensus 361 ~~~~~i~~~l~~~~~~ 376 (382)
...++++-.|+++.++
T Consensus 162 ~RK~EilpylERL~~e 177 (352)
T COG4148 162 PRKREILPYLERLRDE 177 (352)
T ss_pred chhhHHHHHHHHHHHh
Confidence 9999999999998754
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=9.5e-34 Score=294.01 Aligned_cols=167 Identities=26% Similarity=0.342 Sum_probs=141.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25899999999999999999999999999999999999999999985 1599
Q ss_pred EecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 267 LVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 267 ~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|+||++.++ +.|++||+.++..... ......++++..++.+..++. ..+||||||||++|||||+++
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~-----------~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLG-SSYYKSEIIKPLQLERLLDKN-----------VKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcC-hHHHHHHHHHHCCCHHHHhCC-----------cccCCHHHHHHHHHHHHHhcC
Confidence 999998864 6699999987532111 233456677777776554443 478999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|++|||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 509 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV 509 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999854 577764
No 335
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=251.77 Aligned_cols=180 Identities=29% Similarity=0.445 Sum_probs=157.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|+. +.+++++|++|++|++++++||||||||||+.+++|+.++++|+|.++|.++.+.+.+++.+.++.
T Consensus 2 I~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 678999999975 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccc-cccHHHHHcCCCC-C-----CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 268 VSQDITLF-SGTVAENIGYRDL-M-----TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~-~-----~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+-|+.++- .-||+|=+.||+- + +..+...+.++++-..+.+.-++. -.+||||||||.-+|.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhhe
Confidence 99999986 4499999999862 1 122344566777777766544332 2589999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
.+.++.+.++||||.++||.+....+++.|+++.+ +||++
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktiv 190 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIV 190 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence 99999999999999999999999999999998875 67776
No 336
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-33 Score=244.99 Aligned_cols=133 Identities=47% Similarity=0.723 Sum_probs=123.5
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
++|++|.|++. ++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.....++++++|++
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 68999999753 6999999999999999999999999999999999999999999999999998777777888999999
Q ss_pred CCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEE
Q 016798 270 QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL 349 (382)
Q Consensus 270 Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~il 349 (382)
| |||||+||++||||++.+|+++
T Consensus 80 q---------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 80 Q---------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred e---------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9 9999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhCC-Cceec
Q 016798 350 ILDEATSALDSRSELLVRQAVDRLLGH-HTVRE 381 (382)
Q Consensus 350 ilDEpts~LD~~~~~~i~~~l~~~~~~-~TvI~ 381 (382)
+|||||++||.++...+.+.++++.++ +|++.
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~ 135 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVII 135 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999987653 67653
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.7e-33 Score=291.62 Aligned_cols=170 Identities=27% Similarity=0.346 Sum_probs=136.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ + ..|+
T Consensus 322 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~ 388 (552)
T TIGR03719 322 VIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLA 388 (552)
T ss_pred EEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEE
Confidence 5999999999975 3699999999999999999999999999999999999999999999854 2 1599
Q ss_pred EecCCCc-ccc-ccHHHHHcCCCCCCCCC--HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 267 LVSQDIT-LFS-GTVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 267 ~v~Q~~~-lf~-~ti~eNi~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|++|++. +++ .|++||+.++....... +.+..++++..++.+. ........||||||||++||||+
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHH
Confidence 9999974 664 59999998753211111 2223334444443211 12334578999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.|+++. .|+|+
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~vii 495 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVV 495 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEE
Confidence 99999999999999999999999999999873 36653
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.3e-33 Score=290.85 Aligned_cols=169 Identities=30% Similarity=0.358 Sum_probs=135.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..++
T Consensus 324 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~ 390 (556)
T PRK11819 324 VIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLA 390 (556)
T ss_pred EEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEE
Confidence 5999999999975 3599999999999999999999999999999999999999999999854 2 1599
Q ss_pred EecCCC-cccc-ccHHHHHcCCCCCCCC--CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 267 LVSQDI-TLFS-GTVAENIGYRDLMTKI--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 267 ~v~Q~~-~lf~-~ti~eNi~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|++|++ .++. .|++||+.++...... .+.+...+++..++.+. ........||||||||++||||+
T Consensus 391 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 391 YVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKTL 460 (556)
T ss_pred EEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHH
Confidence 999997 5665 4999999875321111 12233344544444211 12334478999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
+.+|++|||||||++||+.+...+.+.|+++. + |+|
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi 496 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEFP-G-CAV 496 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-C-eEE
Confidence 99999999999999999999999999999873 3 655
No 339
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1e-33 Score=259.02 Aligned_cols=154 Identities=23% Similarity=0.305 Sum_probs=120.4
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE-EcCEeCCCCCHHHHhcceEEecCCCccccc-cHHH
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAE 281 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~e 281 (382)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 776532 13456778876 9999
Q ss_pred HHcCCCCCCCCCHHHHHHHH-HHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 282 NIGYRDLMTKIDMERVEHTA-RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 282 Ni~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
|+.+.....+.+.++..+.+ +.. .+++.+++.+ ..||||||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLT-------QLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-------ChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 99764221123334433322 222 2333344443 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCceec
Q 016798 361 RSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 361 ~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+++.+.+.+.+..+++|+|.
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~ 158 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIV 158 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEE
Confidence 999999998866555677653
No 340
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=8.3e-34 Score=275.30 Aligned_cols=149 Identities=38% Similarity=0.524 Sum_probs=123.8
Q ss_pred EECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHcCCCCCCCCCH----
Q 016798 220 LIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM---- 294 (382)
Q Consensus 220 ivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~---- 294 (382)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++|++|++.+|+. |++||+.++......+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999977654 36789999999999975 99999987632111222
Q ss_pred HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 295 ~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
+++.++++..++.++.++. ..+||||||||++|||||+++|+++||||||++||+.+...+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRK-----------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCC-----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 3455666666665554443 47899999999999999999999999999999999999999999999876
Q ss_pred C--CCceec
Q 016798 375 G--HHTVRE 381 (382)
Q Consensus 375 ~--~~TvI~ 381 (382)
+ ++|+|+
T Consensus 148 ~~~g~tiii 156 (325)
T TIGR01187 148 EQLGITFVF 156 (325)
T ss_pred HhcCCEEEE
Confidence 4 577764
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.9e-33 Score=294.11 Aligned_cols=169 Identities=28% Similarity=0.372 Sum_probs=135.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4899999999975 35999999999999999999999999999999999999999999998 4322 599
Q ss_pred EecCCC-ccccc-cHHHHHcCCCCCCCCC--HHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDI-TLFSG-TVAENIGYRDLMTKID--MERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~-~lf~~-ti~eNi~~~~~~~~~~--~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|++|++ .+++. |+.||+.++......+ ..++...++..++. +.. ......||||||||++||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRA-----------MTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHH-----------hChhhhCCHHHHHHHHHHHH
Confidence 999986 46654 9999998653211111 23344445544442 122 22346899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++.+|++|||||||++||..+...+.+.|+++ +.|+|+
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~ 492 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLL 492 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEE
Confidence 99999999999999999999999999999886 347663
No 342
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-33 Score=265.52 Aligned_cols=179 Identities=32% Similarity=0.403 Sum_probs=148.4
Q ss_pred CcEEEEeEEEEeCCC---------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC
Q 016798 186 GDVKFCNISFKYADN---------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~---------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~ 256 (382)
.-++.+||...|+-. ...++++|||++++||++||||+||||||||-..|+++.++. |+|.++|.++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 358999998888642 124689999999999999999999999999999999999776 9999999999988
Q ss_pred CHHHH---hcceEEecCCCc--cc-cccHHHHHcCCCCCC--CCC----HHHHHHHHHHcChHHHH-HhCCCCcccccCC
Q 016798 257 RLDSL---RRHVGLVSQDIT--LF-SGTVAENIGYRDLMT--KID----MERVEHTARTANADEFV-RTLPQGYNTHIGP 323 (382)
Q Consensus 257 ~~~~~---r~~i~~v~Q~~~--lf-~~ti~eNi~~~~~~~--~~~----~~~~~~~~~~~~l~~~i-~~lp~Gldt~vge 323 (382)
+.+++ |+++-+|+|||+ |- ..||.+-|.-|..-+ ..+ ++++.++++.+|++.-. .+.
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY---------- 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY---------- 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC----------
Confidence 87654 688999999998 33 348888876543211 112 45677888888887533 344
Q ss_pred CCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
...+|||||||||||||+.-+|++++||||||+||..-+.+|.+.|+++.++
T Consensus 424 -PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k 475 (534)
T COG4172 424 -PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475 (534)
T ss_pred -CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999987643
No 343
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.9e-33 Score=310.61 Aligned_cols=185 Identities=27% Similarity=0.367 Sum_probs=151.4
Q ss_pred cEEEEeEEEEeCC-----------CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeC
Q 016798 187 DVKFCNISFKYAD-----------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDV 253 (382)
Q Consensus 187 ~i~~~~v~f~y~~-----------~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~ 253 (382)
.++++||+|..+. +...+|+|||+++++|+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998752 123689999999999999999999999999999999999874 789999999886
Q ss_pred CCCCHHHHhcceEEecCCCcccc-ccHHHHHcCCCC---CCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCC
Q 016798 254 QNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDL---MTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (382)
Q Consensus 254 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~---~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G 325 (382)
. ...+++.+|||+|++.+++ .|++||+.+... ....+.+ .++++++..++.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 2456778999999998776 499999976421 0122322 35567777776543 366777554
Q ss_pred -CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 326 -SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 326 -~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
..||||||||++|||+|+.+|++|+||||||+||+.+...+.+.|+++.+ ++|+|.
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~ 1074 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1074 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999999999999999999999999999999999999864 678763
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.8e-33 Score=247.24 Aligned_cols=122 Identities=30% Similarity=0.367 Sum_probs=109.7
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecC
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 270 (382)
.|++++|++ ..++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~--~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 488999965 357888 49999999999999999999999999999999999999999853 788888
Q ss_pred CCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEE
Q 016798 271 DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350 (382)
Q Consensus 271 ~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ili 350 (382)
++. ||||||||++||||++.+|++++
T Consensus 69 ~~~------------------------------------------------------LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 69 YID------------------------------------------------------LSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred cCC------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 653 99999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhC-C-Cceec
Q 016798 351 LDEATSALDSRSELLVRQAVDRLLG-H-HTVRE 381 (382)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~~-~-~TvI~ 381 (382)
|||||++||+.+.+.+.+.++++.+ + +|+|+
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiii 127 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999998754 3 67663
No 345
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-33 Score=251.34 Aligned_cols=182 Identities=21% Similarity=0.405 Sum_probs=155.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.+++++|+.+|++. .+++|+||++++|++.+++|||||||||.+++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 47899999999763 59999999999999999999999999999999999999999999999999864 4577899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|+|.+--|++. |+.|-+.|.....+++..++..- ++.|++++. .--.-...-..||-|.+|+|-+.-|++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999955 99999987655556666665443 345676653 22223345679999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|+++|||||+|||||.+.+.+.+.+.+++ ++.|+|+
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIif 185 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999987 4788875
No 346
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=233.58 Aligned_cols=169 Identities=30% Similarity=0.438 Sum_probs=144.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCCHHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~ 263 (382)
-+.++||+.+-++. -.|-|+||+|.+||++-|.||||||||||+.-+.|.+.++ +|++.+|++++..++.. ++
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 36789999888764 5899999999999999999999999999999999999884 79999999999987754 78
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCCCC---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|+++||+.+|+- +|.+|+.|.-|..- .-......++++.+++.+..+-| .+||||||.|++|-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 99999999999977 99999998755211 11234556788888888777766 79999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHH
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAV 370 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l 370 (382)
|+|+..|+.++||||+|.||..-+.++.+-.
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHH
Confidence 9999999999999999999998666655543
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=286.73 Aligned_cols=167 Identities=25% Similarity=0.356 Sum_probs=136.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999974 35999999999999999999999999999999999999999999999741 2699
Q ss_pred EecCCC--cccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 267 LVSQDI--TLFS-GTVAENIGYRDLMTKIDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 267 ~v~Q~~--~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|++|++ .++. .|+.+++....+ ....+++...++..++. +... .....||||||||++|||++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAP--QELEQKLRDYLGGFGFQGDKVT-----------EETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCc--hhhHHHHHHHHHHcCCChhHhc-----------CchhhCCHHHHHHHHHHHHH
Confidence 999985 3443 388888742111 12345556666666653 2222 23478999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.|+++ + .|+|+
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~ 482 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVV 482 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEE
Confidence 9999999999999999999999999999987 3 47764
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.6e-32 Score=288.25 Aligned_cols=170 Identities=24% Similarity=0.354 Sum_probs=135.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
.-|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 359999999999643 3589999999999999999999999999999999999999999999865 2469
Q ss_pred EEecCCCccccccHHHHHc--CCCCCCCCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 266 GLVSQDITLFSGTVAENIG--YRDLMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~--~~~~~~~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+|++|++. ...++.+|.. +.......+++++.++++..++.+ ... .....||||||||++||||+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~-----------~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----------QPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhc-----------CCccccCHHHHHHHHHHHHH
Confidence 99999873 2234555532 111111234667777888877753 222 23478999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.+.+. + .|+|+
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIi 679 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLM 679 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEE
Confidence 9999999999999999999999999999876 3 37663
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.8e-33 Score=289.56 Aligned_cols=172 Identities=27% Similarity=0.310 Sum_probs=138.7
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE-----------EcCEeCCCCCHH-
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNIRLD- 259 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~-----------~~g~~~~~~~~~- 259 (382)
+++++|+.+ ..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..+
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 378999753 35899999 8999999999999999999999999999999999997 899888654221
Q ss_pred -HHhcc----eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 -SLRRH----VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 -~~r~~----i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
..+.+ +.+++|.|.+|.+|++||+.... ..+++.++++..++.+..+ ....+|||||||
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~-----~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~q 219 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD-----ERGKLDEVVERLGLENILD-----------RDISELSGGELQ 219 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh-----HHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHH
Confidence 11122 44556677788889999996421 2345666777766654332 334689999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIi 266 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLV 266 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999999999876777764
No 350
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.2e-32 Score=238.66 Aligned_cols=174 Identities=24% Similarity=0.366 Sum_probs=147.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++.+|++..-+ +..++.++||++.+||.+-|+||||||||||+++|+|+.+|++|+|.++|.++.... +++++.+-|
T Consensus 3 L~a~~L~~~R~--e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERG--ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred chhhhhhhccC--cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 34567665443 346899999999999999999999999999999999999999999999999988643 446788999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCC-CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+.+.+-+=. .|++||+.|...... .+.+.++++++.+++..+. .+| ..+||.||++|+||||-++..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-dlp----------~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLP----------VGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-ccc----------hhhcchhHHHHHHHHHHHcCC
Confidence 999999864 499999987644222 3578999999999987643 333 368999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
+|++||||||++||.+.+..+...+.+...
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~ 178 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAA 178 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999988888877654
No 351
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.98 E-value=5.9e-32 Score=244.03 Aligned_cols=177 Identities=27% Similarity=0.368 Sum_probs=146.3
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcc
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRH 264 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 264 (382)
.-|+++||+++|.+ +++|+|||++|++||.-+|+||||||||||+++++|.++|++|.+.+.|.....-+. .++|++
T Consensus 30 ~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 45999999999975 469999999999999999999999999999999999999999999999999988777 899999
Q ss_pred eEEecCCCcc-c--cccHHHHHcCC------CCCCCCCHHHH---HHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 265 VGLVSQDITL-F--SGTVAENIGYR------DLMTKIDMERV---EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 265 i~~v~Q~~~l-f--~~ti~eNi~~~------~~~~~~~~~~~---~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
||+|+-+-+. | +.+++|-+.-| ......++++. ...++.+++.+. .+..-..||-||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-----------a~r~~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-----------ADRPFGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-----------ccCchhhcCHhH
Confidence 9999976652 3 34788877522 21113444443 334444444443 334457999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
|||+-|||||+++|++|||||||++||....+.+.+.|.++..
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~ 219 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998864
No 352
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6.6e-32 Score=283.54 Aligned_cols=177 Identities=25% Similarity=0.349 Sum_probs=128.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++ ..+|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++|
T Consensus 2 i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 789999999975 369999999999999999999999999999999999999999999998742 3788
Q ss_pred ecCCCccccccHHHHHcCCCCC-CCC-----------CHHHHH---HHHH-------HcChHHHHHhCCCCcc-cccCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLM-TKI-----------DMERVE---HTAR-------TANADEFVRTLPQGYN-THIGPR 324 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~-~~~-----------~~~~~~---~~~~-------~~~l~~~i~~lp~Gld-t~vge~ 324 (382)
++|++..+..|+.+++.-.... ... ....+. .... ...+.+.+..+ |+. ......
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~ 146 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERP 146 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCc
Confidence 8886544444555544211000 000 000000 0000 01122334433 443 223445
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
...||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tvii 201 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLIL 201 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEE
Confidence 6789999999999999999999999999999999999999999999876 356653
No 353
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=2.8e-32 Score=240.78 Aligned_cols=172 Identities=30% Similarity=0.388 Sum_probs=146.2
Q ss_pred CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc--cc-cc
Q 016798 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT--LF-SG 277 (382)
Q Consensus 201 ~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf-~~ 277 (382)
++++|+++||+|++|+++-|+|.||||||||++.|+|-+.|++|+|.+||+|+..++.......++-|+|||- .+ +.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4579999999999999999999999999999999999999999999999999999999887788999999997 35 55
Q ss_pred cHHHHHcCCCCC---CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCc
Q 016798 278 TVAENIGYRDLM---TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (382)
Q Consensus 278 ti~eNi~~~~~~---~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEp 354 (382)
||.||+.+.... +..+.. ...-......+-+..+|.|++-.++.+-.-|||||||-++|+-|.++.|+||+|||-
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999764321 112211 112223345567889999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q 016798 355 TSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~ 374 (382)
|++|||.+...|++.=.+.-
T Consensus 176 TAALDPkta~~vm~lT~kiV 195 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIV 195 (263)
T ss_pred hhcCCcchHHHHHHHHHHHH
Confidence 99999999998888765543
No 354
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=7.1e-32 Score=302.98 Aligned_cols=172 Identities=25% Similarity=0.286 Sum_probs=139.6
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC----CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY----DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 277 (382)
+.+|+|+|+++++||+++|+||||||||||+|+|+|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|++.+|+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 578999999999886543 3457789999999988865
Q ss_pred -cHHHHHcCCCC----C---CCCCHHHH-----HHHHHHcChHHHHHhCCCCcccccCC-CCCCCChHHHHHHHHHHHcc
Q 016798 278 -TVAENIGYRDL----M---TKIDMERV-----EHTARTANADEFVRTLPQGYNTHIGP-RGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 278 -ti~eNi~~~~~----~---~~~~~~~~-----~~~~~~~~l~~~i~~lp~Gldt~vge-~G~~lSgGq~QrialaRall 343 (382)
|++||+.++.. . .+.+.++. +.+++..++ .+-.||.+|+ ....||||||||++||||++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 99999986421 0 01222222 123333333 3446788875 46789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+|++++|||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999864 678764
No 355
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.5e-31 Score=278.21 Aligned_cols=186 Identities=35% Similarity=0.471 Sum_probs=154.8
Q ss_pred CcEEEEeEEEEeCCC---CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC---CCceEEEcCEeCCCCCHH
Q 016798 186 GDVKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~---~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~---~~G~i~~~g~~~~~~~~~ 259 (382)
.+++++|+++..++. .+.+|+|||.+++|||..||.||||||||||+++|+|..++ .+|+|.+||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 468999999888765 36799999999999999999999999999999999999975 78999999954 3567
Q ss_pred HHhcceEEecCCCccccc-cHHHHHcCCCC---CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCC-CCCCCCh
Q 016798 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDL---MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGP-RGSSLSG 330 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~---~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge-~G~~lSg 330 (382)
.+++..|||+||..+++. ||+|++.+... ....+ ++.++++++..++.+- -||.+|. +...+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCcccc
Confidence 789999999999999976 99999975421 11122 2445555555555422 4677874 3479999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||+|+++|.-++.||+||+|||||||||+.+..++.+.|+++. ++||||.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~ 225 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVIC 225 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999986 5899884
No 356
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=3.7e-31 Score=268.95 Aligned_cols=177 Identities=33% Similarity=0.415 Sum_probs=135.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ +++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+. -+++
T Consensus 3 ~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 4889999999964 46999999999999999999999999999999999999999999987641 2599
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHH------------------HHH-------cChHHHHHhCCCCcccc
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHT------------------ART-------ANADEFVRTLPQGYNTH 320 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~------------------~~~-------~~l~~~i~~lp~Gldt~ 320 (382)
|++|++.+.+. |++|.+..+......-..+.+.+ ... +.+...+..| |+...
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~ 147 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE 147 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc
Confidence 99999999966 99999876542100000111111 110 1122223332 22222
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
...-.+||||||-|++|||||+.+|++|+|||||++||.++-..+.+.|.++. + |+|+
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tvii 205 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIV 205 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEE
Confidence 33347899999999999999999999999999999999999999999998764 4 7763
No 357
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1e-30 Score=231.41 Aligned_cols=135 Identities=26% Similarity=0.289 Sum_probs=108.3
Q ss_pred CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHH
Q 016798 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (382)
Q Consensus 201 ~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (382)
..++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. .. ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~----~~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK----FSRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc----cccccEEEEhH----------
Confidence 356899999999999999999999999999999985 368999998752 11 12445788777
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC--CCEEEEeCcCCCC
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN--SSVLILDEATSAL 358 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~--~~ililDEpts~L 358 (382)
.++++..++.++ .+.....+||||||||++||||++++ |+++||||||++|
T Consensus 68 -----------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 -----------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred -----------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 122333332111 24556789999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHh-CCCceec
Q 016798 359 DSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 359 D~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|+++.+.+.+.|+++. .++|+|+
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIi 144 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVIL 144 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999876 4678764
No 358
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=9.8e-31 Score=274.97 Aligned_cols=176 Identities=28% Similarity=0.318 Sum_probs=127.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 3789999999975 369999999999999999999999999999999999999999999998621 256
Q ss_pred EecCCCcc-ccccHHHHHcCCCC----------------CCCCCHHHHHHH------HH-------HcChHHHHHhCCCC
Q 016798 267 LVSQDITL-FSGTVAENIGYRDL----------------MTKIDMERVEHT------AR-------TANADEFVRTLPQG 316 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~~~----------------~~~~~~~~~~~~------~~-------~~~l~~~i~~lp~G 316 (382)
+++|++.. ..+++.+++..+.. ..+...+.+... +. ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 77776532 22455555421100 000000111000 00 01123334433 3
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 317 ldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+. .......||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvli 208 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIF 208 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEE
Confidence 32 134457899999999999999999999999999999999999999999998873 46653
No 359
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=4.4e-31 Score=296.15 Aligned_cols=177 Identities=22% Similarity=0.321 Sum_probs=138.9
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-c
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-G 277 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ 277 (382)
..+|+|+|+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+|+ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999987653 2678999999988775 5
Q ss_pred cHHHHHcCCCCCC----------CCCH----------HHHHHHHHH---cC------hHHHHHh--CCCCcccccCCC-C
Q 016798 278 TVAENIGYRDLMT----------KIDM----------ERVEHTART---AN------ADEFVRT--LPQGYNTHIGPR-G 325 (382)
Q Consensus 278 ti~eNi~~~~~~~----------~~~~----------~~~~~~~~~---~~------l~~~i~~--lp~Gldt~vge~-G 325 (382)
|++||+.++.... +.+. +++...++. .+ .++.++. |.+-.||.+|+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999998642100 0011 111101111 00 1223333 344567888764 4
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
..||||||||++|||+++.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|+
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvii 392 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM 392 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 78999999999999999999999999999999999999999999999853 678774
No 360
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.2e-30 Score=228.06 Aligned_cols=182 Identities=25% Similarity=0.335 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHHHh-c
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLR-R 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r-~ 263 (382)
-++++|++.+-.+. +.+|+++||+|++||+.+|.||||||||||.+.|+|.- ++++|+|.+||+||.++++++.. .
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47899999988753 36999999999999999999999999999999999975 78999999999999999988764 4
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCC-CC------CCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCCCCChHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLM-TK------IDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~-~~------~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
-+.+-+|.|.=++| |+.+-++.+... +. ...+++.++++..++++ ++++ . + ...+|||||.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R---~----v---N~GFSGGEkK 151 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER---Y----V---NEGFSGGEKK 151 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc---c----c---CCCcCcchHH
Confidence 69999999999988 999888633110 01 12456677888888876 3332 1 2 2579999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCce
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTV 379 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~Tv 379 (382)
|.-|+..++-+|++.|||||-|+||.++-+.|.+.+.+++. ++++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~ 197 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGV 197 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeE
Confidence 99999999999999999999999999999999999999875 4443
No 361
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=227.21 Aligned_cols=181 Identities=25% Similarity=0.365 Sum_probs=154.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC-EeCCCCCHHHHhc-c
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD-HDVQNIRLDSLRR-H 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g-~~~~~~~~~~~r~-~ 264 (382)
-++++||+.+|++- .+|+|+||++.+||.-+|+||||+||||++..|.|-.+|+.|+|+++| .|+..++...+.+ -
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 57899999999764 589999999999999999999999999999999999999999999999 9999998877644 5
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCC------------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLM------------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~------------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
||-=+|.|..|.. ||+||+.+.... .....+++.+.+...++.+.... -...||.|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-----------~A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-----------LAALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-----------hhhhhccc
Confidence 9999999999976 999999643211 11123466777777776654433 35789999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
|||++.|+.-+.++|++|+||||++++-.+...+.-+.|+++.+.++++
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsil 200 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSIL 200 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEE
Confidence 9999999999999999999999999998888888999999998887765
No 362
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.9e-30 Score=220.17 Aligned_cols=178 Identities=29% Similarity=0.418 Sum_probs=132.9
Q ss_pred cEEEEeEEEEeC----CC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE----eCCCCC
Q 016798 187 DVKFCNISFKYA----DN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIR 257 (382)
Q Consensus 187 ~i~~~~v~f~y~----~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~----~~~~~~ 257 (382)
.+.++|++++|. ++ .-|+++|+||+++.|||+.+=||||||||||++.|.+-|.|++|+|.+.-. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 367788876663 11 247999999999999999999999999999999999999999999998432 333333
Q ss_pred HH---HH-hcceEEecCCCcccc-ccHHHHHc-----CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCC
Q 016798 258 LD---SL-RRHVGLVSQDITLFS-GTVAENIG-----YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (382)
Q Consensus 258 ~~---~~-r~~i~~v~Q~~~lf~-~ti~eNi~-----~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~ 327 (382)
+. +. |+.||||+|--...+ -+-.|-++ .|-+ .+...+.....+...++.+-+-+|| ...
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~-~~~a~~~a~~Ll~rLnlperLW~La----------PaT 152 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP-REVARAKAADLLTRLNLPERLWSLA----------PAT 152 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC-HHHHHHHHHHHHHHcCCCHHHhcCC----------Ccc
Confidence 22 23 456999999765433 24444432 2221 1111233344555566666555554 479
Q ss_pred CChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 328 lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
+||||+||+.|||+|+-|-+||+|||||++||..+.+.+.+.|++.+.
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka 200 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA 200 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988764
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=1.1e-29 Score=268.52 Aligned_cols=189 Identities=23% Similarity=0.286 Sum_probs=133.4
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC---CCCCceEEEcCEeCCC--CCH--
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY---DPLSGCILVDDHDVQN--IRL-- 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~---~~~~G~i~~~g~~~~~--~~~-- 258 (382)
..|+++|++|+|++. ++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 469999999999753 5999999999999999999999999999999999864 5889999876554321 111
Q ss_pred ----------HHHhcceEEecCCCccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcCh----------HHHHHhCC
Q 016798 259 ----------DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANA----------DEFVRTLP 314 (382)
Q Consensus 259 ----------~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l----------~~~i~~lp 314 (382)
..+++.+++++|+|.+...+..+|..... ....+. +++.++++..++ .+.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGAN-KDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhccccccccccc-ccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 11245588999988764444444432110 011111 223333332221 1223332
Q ss_pred CCccc-ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 315 QGYNT-HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 315 ~Gldt-~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++. .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tvii 396 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIV 396 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEE
Confidence 3321 122334789999999999999999999999999999999999999999999887 457663
No 364
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.7e-29 Score=217.93 Aligned_cols=175 Identities=29% Similarity=0.396 Sum_probs=134.7
Q ss_pred EEEEeEEEEeCC-------CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH
Q 016798 188 VKFCNISFKYAD-------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~-------~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 260 (382)
++++|+|++|.. +...+++.|||++++|+++||+|.||||||||+|+|+|+.+|++|+|++||.++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 556777654432 1234789999999999999999999999999999999999999999999999997767666
Q ss_pred HhcceEEecCCCc-cccccHHHHHc--CCCC---CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 261 LRRHVGLVSQDIT-LFSGTVAENIG--YRDL---MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 261 ~r~~i~~v~Q~~~-lf~~ti~eNi~--~~~~---~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
..++|-+++|||. -|+ -|-||. +-.| .++.+ .+++.+.++.+|+ +|+--+- ....||.
T Consensus 85 R~k~IRMiFQDpnts~N--PRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pdhan~----~~~~la~ 152 (267)
T COG4167 85 RSKRIRMIFQDPNTSLN--PRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDHANY----YPHMLAP 152 (267)
T ss_pred hhhheeeeecCCccccC--hhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Ccccccc----chhhcCc
Confidence 6678999999997 243 222321 0011 11122 3566677777776 3433222 2468999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
|||||+||||||.-+|+|+|.||+.++||..-+-++.+...++.
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888776654
No 365
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=7.4e-29 Score=236.52 Aligned_cols=181 Identities=30% Similarity=0.379 Sum_probs=144.7
Q ss_pred cEEEEeEEEEeC--CCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~--~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~ 259 (382)
-++++|+|..|. ++...++++|||+|++||++||||+||||||-.+..++|+++- .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 478899887775 3345789999999999999999999999999999999999964 479999999999998888
Q ss_pred HHhc----ceEEecCCCc--cccc-cH----HHHHcCCCCC-CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCC
Q 016798 260 SLRR----HVGLVSQDIT--LFSG-TV----AENIGYRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (382)
Q Consensus 260 ~~r~----~i~~v~Q~~~--lf~~-ti----~eNi~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~ 327 (382)
.+|+ +|++++|+|. |=+- || .|-|.+.... ...-.+++.+.++.+++.+--. .+.....+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 7763 7999999997 2222 44 4444443221 1122456677888888754322 12234489
Q ss_pred CChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 328 lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
||||||||+.||-||+.+|++||-||||.+||...+.+|++.|+++.+
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998864
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=4.3e-28 Score=246.60 Aligned_cols=166 Identities=32% Similarity=0.401 Sum_probs=140.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
.-++++|++++|+++ +.+++++||.|.+|+++|||||||+|||||+|+|+|...|.+|+|.++-. -++
T Consensus 320 ~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i 387 (530)
T COG0488 320 LVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI 387 (530)
T ss_pred eeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence 358999999999765 57999999999999999999999999999999999999999999997631 259
Q ss_pred EEecCCCc-cccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 266 GLVSQDIT-LFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 266 ~~v~Q~~~-lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
||.+|+.. ++.. |+.|++.-..+. ..+.++...|...++...-.. .....||||||-|+.||+.++
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~--~~e~~~r~~L~~f~F~~~~~~----------~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPD--GDEQEVRAYLGRFGFTGEDQE----------KPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCcc--ccHHHHHHHHHHcCCChHHHh----------CchhhcCHhHHHHHHHHHHhc
Confidence 99999994 4533 899999765432 236788888888877543222 234689999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
.+|.+|||||||+.||.++...+.++|.++..
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~G 487 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDFEG 487 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999988753
No 367
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=227.37 Aligned_cols=334 Identities=18% Similarity=0.244 Sum_probs=228.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 016798 25 LVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKA---LIPQTVQ 101 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 101 (382)
.+.+.+.++..+...+.....+.+...=+..+.+.++|-.|+..+.+..+.++.............+.+. +..++..
T Consensus 279 ~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~m 358 (728)
T KOG0064|consen 279 FILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVM 358 (728)
T ss_pred HHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777788888889999999999999999988888776654433222211111 1122111
Q ss_pred HHHHHH-HHHH-----HHHHHHHhCCCC-------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016798 102 LIYFGA-LFIL-----CGGSLLVSGGSF-------D-GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTK 167 (382)
Q Consensus 102 ~~~~~~-~~~~-----~~g~~lv~~g~~-------t-~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~ 167 (382)
-+.+. ..++ ++..-....+.. + ...+++.=.++......+..+...+.++.+-...-.|++++++
T Consensus 359 -KYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~ 437 (728)
T KOG0064|consen 359 -KYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFS 437 (728)
T ss_pred -HHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 01110 0000 000001111111 0 1123333333444456677778788888777777778776542
Q ss_pred C----c---------ccccCC------CCCCCCC-----CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECC
Q 016798 168 F----K---------SKVIEK------PDAVSLD-----HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGP 223 (382)
Q Consensus 168 ~----~---------~~~~~~------~~~~~~~-----~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~ 223 (382)
. . ++..+. .++.+.+ .....|.++|+-.--|.++ .++..++|+|++|-.+.|.||
T Consensus 438 v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLItGP 516 (728)
T KOG0064|consen 438 VLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD-VLVPKLTFQIEPGMHLLITGP 516 (728)
T ss_pred HHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcc-eeecceeEEecCCceEEEECC
Confidence 1 0 000000 0011110 1123589999988777664 478999999999999999999
Q ss_pred CCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCC-----CCCCCHHHHH
Q 016798 224 SGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL-----MTKIDMERVE 298 (382)
Q Consensus 224 sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~-----~~~~~~~~~~ 298 (382)
||||||+|.++|.|++|.+.|...+- -+.+|-|+||.|+.=-||.||-|.|-+. ..+++|.++.
T Consensus 517 NGCGKSSLfRILggLWPvy~g~L~~P-----------~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~ 585 (728)
T KOG0064|consen 517 NGCGKSSLFRILGGLWPVYNGLLSIP-----------RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLE 585 (728)
T ss_pred CCccHHHHHHHHhccCcccCCeeecC-----------CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHH
Confidence 99999999999999999888877642 1345999999999888899999987543 2357789999
Q ss_pred HHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 299 ~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
..++.+.++..+++ ..|+|.. .+=-.-||||||||+++||.++++|+..+|||+||++.++-|..+.++.++.
T Consensus 586 ~iL~~v~L~~i~qr-~~g~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~ 658 (728)
T KOG0064|consen 586 AILDIVHLEHILQR-EGGWDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA 658 (728)
T ss_pred HHHHHhhHHHHHHh-ccChhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc
Confidence 99999999876655 4566643 2334679999999999999999999999999999999999999999998775
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=5.1e-28 Score=218.59 Aligned_cols=145 Identities=21% Similarity=0.258 Sum_probs=113.7
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC---------ceEEEcCEeCCCCCHHHHhcceEEecCCCcccc
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---------GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS 276 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~---------G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 276 (382)
+++++++++| +++|+||||||||||+++|+|+..|.. |++.++|.+... ...+++|++++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 468888877643 22357899999999877
Q ss_pred ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc----CCCCEEEEe
Q 016798 277 GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILD 352 (382)
Q Consensus 277 ~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall----~~~~ililD 352 (382)
++.. ..+++.++++. ++-.+ .....||||||||++|||+++ .+|++++||
T Consensus 89 --------~~~~----~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlD 142 (197)
T cd03278 89 --------YSII----SQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLD 142 (197)
T ss_pred --------eeEE----ehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 2110 12344444444 11122 344789999999999999986 577999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 353 EATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||++||+.+...+.+.|+++.++.|+|+
T Consensus 143 EP~~~LD~~~~~~l~~~l~~~~~~~tiIi 171 (197)
T cd03278 143 EVDAALDDANVERFARLLKEFSKETQFIV 171 (197)
T ss_pred CCcccCCHHHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999877777763
No 369
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.6e-27 Score=217.55 Aligned_cols=171 Identities=28% Similarity=0.365 Sum_probs=125.2
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec-CCCccc-cccH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS-QDITLF-SGTV 279 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf-~~ti 279 (382)
-++++||||+||+|++++++|+|||||||++|+|.|+..|++|.|.++|.+...-. +++-+++++|+ |...+. .-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~-~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR-EEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhH-HHHHHHHHHHhhhhheeeeechh
Confidence 35899999999999999999999999999999999999999999999998876533 33334455543 333321 2223
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCC
Q 016798 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (382)
Q Consensus 280 ~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD 359 (382)
.|-+.......++++++..+-++ .+.+-| +++..+......||-|||-|.-||-||+++|+||+|||||=+||
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 33332111111234444433221 222222 55666666778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC--CCcee
Q 016798 360 SRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 360 ~~~~~~i~~~l~~~~~--~~TvI 380 (382)
...+..|.+.+++... +.||+
T Consensus 189 V~aq~~ir~Flke~n~~~~aTVl 211 (325)
T COG4586 189 VNAQANIREFLKEYNEERQATVL 211 (325)
T ss_pred hhHHHHHHHHHHHHHHhhCceEE
Confidence 9999999999998753 45554
No 370
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.1e-27 Score=220.18 Aligned_cols=173 Identities=24% Similarity=0.306 Sum_probs=117.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh----------------CCCCCCc------
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----------------LYDPLSG------ 244 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g----------------~~~~~~G------ 244 (382)
.|+++|. .+|.+ ..++++++ |++++|+||||||||||+++|++ +..+.+|
T Consensus 3 ~i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 4677774 23653 34777776 89999999999999999999984 4445555
Q ss_pred --eEEEcCEeCCC-C--CHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHH--HhCCCC-
Q 016798 245 --CILVDDHDVQN-I--RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV--RTLPQG- 316 (382)
Q Consensus 245 --~i~~~g~~~~~-~--~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i--~~lp~G- 316 (382)
+|.+++.+-.. + +...+++.+++++|++.+++. ..+.+++...++..++...- ...|+|
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-------------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-------------NVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-------------EcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 55555532111 0 122345667888877766542 12344455555554442210 001122
Q ss_pred ------cccccCCCCCCCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 317 ------YNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 317 ------ldt~vge~G~~lSgGq~QrialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
++....+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|+++.+++|+|
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii 215 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFI 215 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 122345677899999999999999996 4689999999999999999999999999987766665
No 371
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=2.1e-26 Score=208.35 Aligned_cols=158 Identities=29% Similarity=0.372 Sum_probs=124.6
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (382)
.++|+||||++++||.+||||+||||||||+|+|+|.|+|++|+|.++|.--.-+.. .+|+-| +.|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 468999999999999999999999999999999999999999999999853221111 133332 358999
Q ss_pred HHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCC
Q 016798 282 NIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357 (382)
Q Consensus 282 Ni~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~ 357 (382)
|+.+.......+ ++.+.+..+-+.|.+|++. | -.+.|.|++-|+|+|-|...+|+|||+||..+.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-------P----vktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-------P----VKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-------c----hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 996422111223 3455566777788888753 3 379999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-hCCCceec
Q 016798 358 LDSRSELLVRQAVDRL-LGHHTVRE 381 (382)
Q Consensus 358 LD~~~~~~i~~~l~~~-~~~~TvI~ 381 (382)
.|+.=.++=.+.++++ .+++|+|.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~ 202 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVL 202 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999888778888887 56777763
No 372
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=6.9e-27 Score=253.02 Aligned_cols=180 Identities=25% Similarity=0.400 Sum_probs=154.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC-CHHHHhcc
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI-RLDSLRRH 264 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~-~~~~~r~~ 264 (382)
..+.++++++.|+.... +++++|+.|++||+.|+.|+|||||||+++++.|..+|++|++.++|.++... +....+++
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46899999999987544 89999999999999999999999999999999999999999999999999764 44468999
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+||+||+..+++. |.||++.+....++.. .+.++..++..++.+..+. + ...+|||+|+|+++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-------~----~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-------Q----VRTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-------c----hhhCCCcchhhHHHH
Confidence 9999999999966 9999997532222222 2346677788887766543 2 469999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~ 377 (382)
-|++.+|++++|||||+|+||.+++.+++.+++.+++.
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998753
No 373
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.6e-27 Score=200.43 Aligned_cols=177 Identities=23% Similarity=0.322 Sum_probs=132.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE-----eCCCCCHHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH-----DVQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~-----~~~~~~~~~~ 261 (382)
-++++++|..|++. .--+||||++.|||..+|||+||||||||+++|.+-+.|+.|+|.+... ++-.++..+.
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 57889999999864 4689999999999999999999999999999999999999999998653 3333443333
Q ss_pred ----hcceEEecCCCc--cc-cccHHHHH----c-CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 262 ----RRHVGLVSQDIT--LF-SGTVAENI----G-YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 262 ----r~~i~~v~Q~~~--lf-~~ti~eNi----~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
|..-|+|.|+|. +- ..|--.|| . .|.. .+ -++. +...+|+++..-. .+.+.+....+|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R--HY--G~iR-----~~a~~WL~~VEI~-~~RiDD~PrtFS 153 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR--HY--GNIR-----AEAQDWLEEVEID-LDRIDDLPRTFS 153 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhh--hh--hhHH-----HHHHHHHHhcccC-cccccCcccccc
Confidence 456899999995 21 11222333 1 1111 01 1111 1123455543322 245666779999
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
||++||+-|||-|...|+++++||||.+||..-+.++++.++.+..
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~ 199 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987753
No 374
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=3.4e-26 Score=211.12 Aligned_cols=165 Identities=23% Similarity=0.309 Sum_probs=100.5
Q ss_pred CCCccceeeEEeeCCCEEEEECCCCCcHHHHH-HHHhhCCCCCCceEEEcC-------EeCC---CCCHHHHhc-ceEEe
Q 016798 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLA-KLLLRLYDPLSGCILVDD-------HDVQ---NIRLDSLRR-HVGLV 268 (382)
Q Consensus 201 ~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~-~ll~g~~~~~~G~i~~~g-------~~~~---~~~~~~~r~-~i~~v 268 (382)
+.++|+|+||+|++||+++|+|+||||||||+ ..+. .+|++.+.+ ..+. .......+. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 35699999999999999999999999999996 4442 134332210 0000 000011121 23444
Q ss_pred cCCCccc-c-c-c---HHHHHcCCCCC-CCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHHHHHHHHHH
Q 016798 269 SQDITLF-S-G-T---VAENIGYRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 269 ~Q~~~lf-~-~-t---i~eNi~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq~QrialaR 340 (382)
.|++... + . + +.+...+.... ......+..+ .++.+ |+.. .......+||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLG---------FLVDV--GLGYLTLSRSAPTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHH---------HHHHC--CCCcccccCccCcCCHHHHHHHHHHH
Confidence 4444311 1 1 2 21221110000 0000111122 23332 3333 245567899999999999999
Q ss_pred HccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 341 ALYQNS--SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 341 all~~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++.+| +++||||||++||+.+...+.+.|+++. .+.|+|+
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~ 194 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLV 194 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999998 5999999999999999999999999875 4667763
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=3e-26 Score=209.60 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=121.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEee-CCCEEEEECCCCCcHHHHHHHHhh-CCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIR-AGETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~-~G~~~aivG~sGsGKSTl~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|.+ +|.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58889986 66542 56777654 599999999999999999999994 666666665543 12223333445677
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHH--HHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA--RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~--~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|++++|++.-. ..+.++. ..+.+++.+.. +.. ++++.+...+.+||||||||++||||+
T Consensus 78 v~~~f~~~~~~----~~~~r~~----gl~~~~~~~~~~l~~g-----------~l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 78 VSFTFQLGGKK----YRVERSR----GLDYDQFTRIVLLPQG-----------EFDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred EEEEEEECCeE----EEEEEec----CCCHHHHHHhhhhhhc-----------chHHHhcCCccccCHHHHHHHHHHHHH
Confidence 99999998432 2222222 23445443322 222 244455666789999999999999999
Q ss_pred cC----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 343 YQ----------NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 343 l~----------~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+. +|+++||||||++||+.+...+.+.++++.+ ++|+|.
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~ 188 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGV 188 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 74 6789999999999999999999999998875 677763
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=3.8e-25 Score=207.28 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=120.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCE-eCCCCC--HHHHhcceEEecCCCc---------cc-cccHH
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDH-DVQNIR--LDSLRRHVGLVSQDIT---------LF-SGTVA 280 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~-~~~~~~--~~~~r~~i~~v~Q~~~---------lf-~~ti~ 280 (382)
..+++||||||||||||+++|++++.|. .|++...|. ++-... ....+..+.+++|++. +. .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 568888776 432111 1122458999999963 22 34888
Q ss_pred HHHcCCCCC------CCCCHHHHHHHHHHcChH--H--H------HHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc-
Q 016798 281 ENIGYRDLM------TKIDMERVEHTARTANAD--E--F------VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY- 343 (382)
Q Consensus 281 eNi~~~~~~------~~~~~~~~~~~~~~~~l~--~--~------i~~lp~Gldt~vge~G~~lSgGq~QrialaRall- 343 (382)
+|+..+... .....+++.++++.+++. + + +.++-+. .........+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 888654311 122456777888888763 0 0 0000000 02234456799999999999999997
Q ss_pred ---CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 344 ---QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 344 ---~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+|++++|||||++||+.+...+.+.|+++.++.|+|.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~ 224 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIV 224 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 68899999999999999999999999999877777663
No 377
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=5.7e-25 Score=235.42 Aligned_cols=182 Identities=28% Similarity=0.402 Sum_probs=147.8
Q ss_pred EEEeEEEEeC--CCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHHHhcc
Q 016798 189 KFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 189 ~~~~v~f~y~--~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
..+|+.|.-+ ++...+|+||+=-++||..+||+|+||||||||+++|+|-..- .+|+|++||.+..+ +..+|.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 3444444432 2345799999999999999999999999999999999988643 57999999999764 678899
Q ss_pred eEEecCCCc-cccccHHHHHcCCCC---CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 265 VGLVSQDIT-LFSGTVAENIGYRDL---MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 265 i~~v~Q~~~-lf~~ti~eNi~~~~~---~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+|||.|+.. +-..||||-|.|... .++.++ +-++++++..+++++- |..||.-|..||..||.|+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhcee
Confidence 999999875 545699999976421 123343 3356677777776654 4568999999999999999
Q ss_pred HHHHHccCCC-CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCcee
Q 016798 337 AIARALYQNS-SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 337 alaRall~~~-~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI 380 (382)
.||=-|+.|| .||+|||||||||+++...|++.++++. .|+|++
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIl 984 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTIL 984 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEE
Confidence 9999999999 8889999999999999999999999986 578876
No 378
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=3.6e-25 Score=218.04 Aligned_cols=169 Identities=27% Similarity=0.367 Sum_probs=138.6
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
++-|.++||+|.|+++. .+++++||-|..++.+|+|||||+|||||+|+++|.+.|..|.|.-.- ..+
T Consensus 387 ~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~ 454 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNK 454 (614)
T ss_pred CCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------ccc
Confidence 34689999999998764 799999999999999999999999999999999999999999997432 223
Q ss_pred eEEecCCCc---cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 265 VGLVSQDIT---LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 265 i~~v~Q~~~---lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
+++..|+.. -+..|..|++.---++ .-..+++...+..+|+.......| -.+||+|||.||++||.
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l 523 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPD-EKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARL 523 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccc-cchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHH
Confidence 455555544 3566888887522111 235688888999999875554444 36999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
.++.|.+|+|||||++||.++-..+.++|.++..+
T Consensus 524 ~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Gg 558 (614)
T KOG0927|consen 524 AVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGG 558 (614)
T ss_pred HhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCc
Confidence 99999999999999999999999999999887553
No 379
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=1.1e-24 Score=204.27 Aligned_cols=166 Identities=27% Similarity=0.389 Sum_probs=112.6
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh-----h-CC----CCCCc-----------eEEEcCEeCCCCC---H
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-----R-LY----DPLSG-----------CILVDDHDVQNIR---L 258 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~-----g-~~----~~~~G-----------~i~~~g~~~~~~~---~ 258 (382)
.-|+|+|++||.|..++|+|+||||||||++.++ + +. .|..+ -|.+|..++..-+ +
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3689999999999999999999999999998653 1 11 12222 3556665553321 1
Q ss_pred HH-------Hhc----------------ceEEecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCC
Q 016798 259 DS-------LRR----------------HVGLVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP 314 (382)
Q Consensus 259 ~~-------~r~----------------~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp 314 (382)
.. +|+ .+.|..++...+ +.|+.||+.|..... ..++..++++.+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--~~~~~~~~L~~v---------- 156 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--KIARKLQTLCDV---------- 156 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--hHHHHHHHHHHc----------
Confidence 11 111 133444444432 446777765542211 112223333333
Q ss_pred CCccc-ccCCCCCCCChHHHHHHHHHHHccCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 315 QGYNT-HIGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 315 ~Gldt-~vge~G~~lSgGq~QrialaRall~~---~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++. .++....+|||||+||++|||+|+++ |+++||||||++||+.+...+.+.|+++.+ +.|+|.
T Consensus 157 -gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi 227 (261)
T cd03271 157 -GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227 (261)
T ss_pred -CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4444 35677889999999999999999996 799999999999999999999999998864 677763
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.91 E-value=2.2e-24 Score=195.93 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=110.0
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHh----hCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCC-----ccccc-c
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLL----RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI-----TLFSG-T 278 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~----g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~-t 278 (382)
++++.+| +++|+||||||||||+++|. |...|.+|.+..+...+. ....+..+++++|++ .++.. |
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4556677 99999999999999999995 888888887762222222 223466899999998 34433 8
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH------HHHHHHccCCCCEEEEe
Q 016798 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR------LAIARALYQNSSVLILD 352 (382)
Q Consensus 279 i~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr------ialaRall~~~~ililD 352 (382)
+.||+.+.. .+++.+.+ .+....||+||+|| +++|||++.+|++++||
T Consensus 93 ~~~~~~~~~------~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 93 ILENVIFCH------QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred Hhhceeeec------hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 999997642 23332222 33457999999996 79999999999999999
Q ss_pred CcCCCCCHHHHH-HHHHHHHHHhC--CCceec
Q 016798 353 EATSALDSRSEL-LVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 353 Epts~LD~~~~~-~i~~~l~~~~~--~~TvI~ 381 (382)
|||++||+.+.. .+.+.++++.+ ++|+|.
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iii 178 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIV 178 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 999999999999 99999998875 567663
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=4.2e-25 Score=201.75 Aligned_cols=165 Identities=18% Similarity=0.259 Sum_probs=116.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh-cce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~i 265 (382)
.|+++|.- +|.+ ..+++++++ ++++|+|||||||||++++|. .++|.+. ...| +++
T Consensus 5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhhH
Confidence 57888864 6754 358898887 899999999999999999997 3344332 1233 579
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHH-----HHHHHH----cChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERV-----EHTART----ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~-----~~~~~~----~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
++++|+..+++. |.++++.+...... .+.+ ...-.. .+-...+..+|++.++.+ ..||+|||||
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r 135 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIID--KPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTL 135 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCC--HHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHH
Confidence 999999887765 77777754432100 0000 000000 011112344577776654 5899999999
Q ss_pred HHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 336 LAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 336 ialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
++||||++ .+|++++|||||++||+.+...+.+.++++.++.|+|
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~i 184 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFI 184 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999996 3589999999999999999999999999987766655
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=1.7e-24 Score=185.78 Aligned_cols=175 Identities=26% Similarity=0.359 Sum_probs=142.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
+.++||+..- -|-.+|.++..||++=+|||||||||||+..++|+. |-+|+|.++|.++..++..++.++=+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 5667776421 256689999999999999999999999999999999 689999999999999999999999999
Q ss_pred ecCCCc-cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC--
Q 016798 268 VSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ-- 344 (382)
Q Consensus 268 v~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~-- 344 (382)
+.|... .|...|+..+++.-|.. .-.+++..+++.. +++..++..-..|||||.||+-+|-..+.
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~-~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDK-TRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchH-HHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998776 78889999998876531 1123444444444 44555666678999999999999998876
Q ss_pred ---CC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 345 ---NS--SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 ---~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|| ++|++|||.++||...+..+-+.|.++. .+.++|+
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vim 187 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVM 187 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEE
Confidence 33 6999999999999999988888888775 5788886
No 383
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=7.6e-23 Score=204.03 Aligned_cols=186 Identities=26% Similarity=0.374 Sum_probs=143.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 265 (382)
-++++|++.. ..++|+||++++||+++|.|--|||+|-++++|.|..++.+|+|.+||+++.-.++. ..+..|
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 4667776531 157999999999999999999999999999999999999999999999998776655 667789
Q ss_pred EEecCCCc---cc-cccHHHHHcCCCCCCCCCHH-HHHHHHHHcChHHHHHhCCCCcccc-cCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDIT---LF-SGTVAENIGYRDLMTKIDME-RVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~---lf-~~ti~eNi~~~~~~~~~~~~-~~~~~~~~~~l~~~i~~lp~Gldt~-vge~G~~lSgGq~Qriala 339 (382)
+|||.|-- +| ..+|++|+.+... ...... -+....+.....+++..|- ..|+ ....-.+||||-+|++.||
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l-~~~~~~~~i~~~~e~~~~~~~~~~l~--Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASL-RRFSRRGLIDRRKERALAERYIRRLR--IKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhh-hhhccccccChHHHHHHHHHHHHhcC--cccCCccchhhcCCchhhhhHHHH
Confidence 99998865 66 5599999987521 110100 1223333334445666552 2221 1133478999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|.|..+|++|||||||.|+|.-+..+|.+.|+++.+ ++++|+
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~ 456 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM 456 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999864 677763
No 384
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.2e-22 Score=195.49 Aligned_cols=167 Identities=28% Similarity=0.398 Sum_probs=135.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
+-+-+.||+|.|++. .+.+++++|-|.--..+|||||||.|||||+++|.|-++|+.|+..-| .|=+|
T Consensus 585 PvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI 652 (807)
T ss_pred CeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence 457899999999976 478999999999999999999999999999999999999999998644 24479
Q ss_pred EEecCCCc-cc--cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 266 GLVSQDIT-LF--SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 266 ~~v~Q~~~-lf--~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|+..|+.. -. ..|--|.+.-+- +.+.++...++-..|+.... +|. .-..||||||-|+++|---
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F---Nlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF---NLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELA 719 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc---CCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHh
Confidence 99999875 22 337777764221 23456666677666654322 221 2368999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~ 377 (382)
++.|+||||||||++||.++-..+.++|.++..+-
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~GgV 754 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNGGV 754 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcE
Confidence 99999999999999999999999999999886543
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=2.1e-22 Score=188.32 Aligned_cols=186 Identities=19% Similarity=0.188 Sum_probs=121.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe-C------CCCCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-V------QNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~-~------~~~~~~ 259 (382)
.|+++|. .+|.+. . +++..+ .+++|+||||||||||+.+|+++..+..|++..++.+ + ...+..
T Consensus 3 ~i~l~nf-~~~~~~--~-----~~~~~~-~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~ 73 (247)
T cd03275 3 RLELENF-KSYKGR--H-----VIGPFD-RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSN 73 (247)
T ss_pred EEEEECc-cccCCC--e-----eecCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCc
Confidence 4777774 335321 1 222233 4999999999999999999999998877887654421 1 011112
Q ss_pred HHhcceEEecCCCc--cccccHHHHHc-CCCCCCCCCHHHHHHHHHHcChHHHHHh--CCCCcccccCC---------CC
Q 016798 260 SLRRHVGLVSQDIT--LFSGTVAENIG-YRDLMTKIDMERVEHTARTANADEFVRT--LPQGYNTHIGP---------RG 325 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~--lf~~ti~eNi~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~--lp~Gldt~vge---------~G 325 (382)
...-.+.+..|++. ++..++++... +.-.....+.+++.+.++.++++.+... .|+|.-+.+.+ ..
T Consensus 74 ~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~ 153 (247)
T cd03275 74 SAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM 153 (247)
T ss_pred eEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence 23334555556543 34445444321 1111123567788888888887422111 23333333322 23
Q ss_pred CCCChHHHHHHHHHHHccC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 326 SSLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
.+||||||||++||||++. +|+++||||||++||+.+...+.+.|+++.+ +.|+|+
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~ 214 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIV 214 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEE
Confidence 7899999999999999986 4899999999999999999999999999865 567653
No 386
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.5e-22 Score=194.14 Aligned_cols=168 Identities=26% Similarity=0.334 Sum_probs=117.6
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
..+|..++++..|++ +.+|++-++++..|-.+|+|||||+|||||++.|.. |+|..-.++ +++|.-
T Consensus 78 ~~Di~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred ccceeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 457999999999985 468999999999999999999999999999999987 444322111 011110
Q ss_pred eEEecCCCc-cccccHHHHHcCCCC--CCCCCHHHHHH-HHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 265 VGLVSQDIT-LFSGTVAENIGYRDL--MTKIDMERVEH-TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 265 i~~v~Q~~~-lf~~ti~eNi~~~~~--~~~~~~~~~~~-~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+++..-. +-.+|-+.-+..-.+ ....+.+++.. ++.-.|..+.....| -..||||-|=|+||||
T Consensus 144 --~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 144 --DTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALAR 211 (582)
T ss_pred --chHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHH
Confidence 1111000 112222222211110 00113455555 777777776666665 3689999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
|++.+||||+|||||+.||..+-.-+.+.|..+. .|+|
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~l 249 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSL 249 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEE
Confidence 9999999999999999999999999999998774 5665
No 387
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.85 E-value=2.6e-20 Score=182.80 Aligned_cols=184 Identities=26% Similarity=0.382 Sum_probs=145.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC-CCCCHHHHhc-
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV-QNIRLDSLRR- 263 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~-~~~~~~~~r~- 263 (382)
.-++++|++..-+. ....+++|||++++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|.|+ ...+...+|+
T Consensus 256 ~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 256 VVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred eEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 35899999976443 24679999999999999999999999999999999999999999999999997 6678777776
Q ss_pred ceEEecCCCc----cccccHHHHHcCCCCCCC-------CCHHHHHHHHHHcChHHHHHhC---CCCcccccCCCCCCCC
Q 016798 264 HVGLVSQDIT----LFSGTVAENIGYRDLMTK-------IDMERVEHTARTANADEFVRTL---PQGYNTHIGPRGSSLS 329 (382)
Q Consensus 264 ~i~~v~Q~~~----lf~~ti~eNi~~~~~~~~-------~~~~~~~~~~~~~~l~~~i~~l---p~Gldt~vge~G~~lS 329 (382)
.++|||.|.+ ..+.|+.||+.++.-... .+..++.+..+. .++.+ +.+.+++ ..+||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~~----a~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDAP----ARSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCcc----hhhcC
Confidence 5999999986 456699999976542110 222333322221 22221 2344443 46899
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCce
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTV 379 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~Tv 379 (382)
||..||+-+||-+.++|++||..+||-|||..+.+.|.+.|.+.++ ++.|
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AV 456 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAV 456 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEE
Confidence 9999999999999999999999999999999999999999988764 4444
No 388
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.85 E-value=8.1e-21 Score=212.75 Aligned_cols=180 Identities=22% Similarity=0.303 Sum_probs=118.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHH---------HHhhCCCCCCc----e----EEEc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAK---------LLLRLYDPLSG----C----ILVD 249 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~---------ll~g~~~~~~G----~----i~~~ 249 (382)
.+++++++. ..|+|+||+|++||+++|+|+||||||||++ .|.|...+..+ . |.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 477777652 3699999999999999999999999999999 55564333111 1 3444
Q ss_pred CEeCCCCC----HH------HHh---------cc-----eEEecCC------------------C---------------
Q 016798 250 DHDVQNIR----LD------SLR---------RH-----VGLVSQD------------------I--------------- 272 (382)
Q Consensus 250 g~~~~~~~----~~------~~r---------~~-----i~~v~Q~------------------~--------------- 272 (382)
-.++..-+ .. ++| ++ ..+.++. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 44332210 01 222 00 1122221 1
Q ss_pred -----ccccc-cHHHHHcCCCCCC---CCCHHHHHHHHHHcChHHHHHhCCCCcccc-cCCCCCCCChHHHHHHHHHHHc
Q 016798 273 -----TLFSG-TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 273 -----~lf~~-ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~-vge~G~~lSgGq~QrialaRal 342 (382)
..+.+ ||.||+.++.... ..+.+++.+.+ +.+..+ |++.. ++....+|||||+||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 13434 8889887753210 00122222222 123322 66654 6777899999999999999999
Q ss_pred c---CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 343 Y---QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 343 l---~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+ ++|+++||||||++||..+.+.+.+.|+++. +++|+|+
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIi 867 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVI 867 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8 6999999999999999999999999999986 4678764
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=4.1e-21 Score=188.55 Aligned_cols=173 Identities=23% Similarity=0.275 Sum_probs=141.0
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
++.+++.+|+|.|+.+..+.+.++++++..-+.+++||++|+||||++|++.+-..|.+|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 346999999999987765789999999999999999999999999999999999999999998764 667
Q ss_pred eEEecCCCcc-ccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 265 VGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 265 i~~v~Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|+|-.|.-.= ++.++-+--.+....++.+++++++.|...|++..+...+ -..||||||=|+++|-...
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence 9999997753 3333322211112223457899999998887765553322 2579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCc
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHT 378 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~T 378 (382)
.+|.+|||||||+.||.++-..+.++|+.+..+-.
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv 533 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVV 533 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEE
Confidence 99999999999999999999999999988765533
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=1e-20 Score=183.42 Aligned_cols=155 Identities=27% Similarity=0.463 Sum_probs=115.9
Q ss_pred EEEeCCCCCCccceeeEEee-----CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 194 SFKYADNMPLVLDQLNLHIR-----AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 194 ~f~y~~~~~~~l~~isl~i~-----~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
-+.|++-. ..+.++.|++. .||+++++||||-||||++++|+|..+|++|. ..++ +++|=
T Consensus 342 lv~y~~~~-k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyK 406 (591)
T COG1245 342 LVEYPDLK-KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYK 406 (591)
T ss_pred eeecchhe-eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeec
Confidence 34555432 24667777665 56889999999999999999999999999998 1222 47888
Q ss_pred cCCCc-cccccHHHHHcCCCCCCCCCHHHH-HHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 269 SQDIT-LFSGTVAENIGYRDLMTKIDMERV-EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 269 ~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
||--. -|++||++-+.-..+.. .....+ .+.++-.++++.++ ..-.+|||||.||+|||-||.+++
T Consensus 407 PQyI~~~~~gtV~~~l~~~~~~~-~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 407 PQYISPDYDGTVEDLLRSAIRSA-FGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred ceeecCCCCCcHHHHHHHhhhhh-cccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhcccc
Confidence 88544 48999999875433211 122222 23444445544443 345789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
++++||||++.||.+.+..+.++|++...
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e 503 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIE 503 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.84 E-value=8.2e-21 Score=187.41 Aligned_cols=186 Identities=24% Similarity=0.331 Sum_probs=114.8
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR- 263 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~- 263 (382)
..++.++|++++|.+. .+++|..|++.+|+.+||+|+|||||||++++|.|-..|..-++-+--.+ +++.+..+..
T Consensus 73 s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~av 149 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQAV 149 (614)
T ss_pred cccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHHHH
Confidence 4579999999999864 68999999999999999999999999999999999888866554331110 1122111111
Q ss_pred --ceEEecCCCccccccHHHHHcCCCCCC-CCCHHHHHHHHHHcChHH-------HHHhCCCCccc-ccCCCCCCCChHH
Q 016798 264 --HVGLVSQDITLFSGTVAENIGYRDLMT-KIDMERVEHTARTANADE-------FVRTLPQGYNT-HIGPRGSSLSGGQ 332 (382)
Q Consensus 264 --~i~~v~Q~~~lf~~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~-------~i~~lp~Gldt-~vge~G~~lSgGq 332 (382)
-+-.+.++..=.. --.|++.-..+.. ...-+++++-+...+.+. .+..| |... .....-.+|||||
T Consensus 150 ~~v~~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 150 QAVVMETDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHhhhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhhccCchH
Confidence 0000111000000 0111111110000 000111222222222111 11111 3222 2334468999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
|.|++|||||+.+|++|+|||||++||.++..-+.+.|.+....
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~ 270 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI 270 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999877543
No 392
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=6.4e-21 Score=172.40 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=95.4
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC-CHHHHhcceEEecCCCccccccHHHHH
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI-RLDSLRRHVGLVSQDITLFSGTVAENI 283 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v~Q~~~lf~~ti~eNi 283 (382)
++++++++.+| +.+|+||||||||||+..|.-.+..... ....|..+.++ ....-...|.+.+|+..++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 35677777776 7799999999999999998754433211 00112211110 00111345788888776555 2
Q ss_pred cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc----cCCCCEEEEeCcCCCCC
Q 016798 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL----YQNSSVLILDEATSALD 359 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal----l~~~~ililDEpts~LD 359 (382)
+....+.+.+. +++.. ..- ..+...+||+|||||++||||+ +.+|+++||||||++||
T Consensus 84 ----~~~~~~~~~~~---------~~l~~-~~~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD 145 (198)
T cd03276 84 ----PLCVLSQDMAR---------SFLTS-NKA----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred ----cCCHHHHHHHH---------HHhcc-ccc----cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccC
Confidence 11111122222 33333 111 2334579999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 016798 360 SRSELLVRQAVDRLLG 375 (382)
Q Consensus 360 ~~~~~~i~~~l~~~~~ 375 (382)
..+...+.+.|++..+
T Consensus 146 ~~~~~~~~~~l~~~~~ 161 (198)
T cd03276 146 MVNRKISTDLLVKEAK 161 (198)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988743
No 393
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.83 E-value=2.5e-20 Score=200.78 Aligned_cols=66 Identities=32% Similarity=0.483 Sum_probs=58.9
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 316 Gldt-~vge~G~~lSgGq~QrialaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++. .++.....||||||||++|||+|+++| +++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5554 467788999999999999999999999 9999999999999999999999999986 4678774
No 394
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=3.9e-19 Score=191.23 Aligned_cols=66 Identities=30% Similarity=0.477 Sum_probs=58.3
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHccC---CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQ---NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 316 Gldt-~vge~G~~lSgGq~QrialaRall~---~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++. .++....+|||||+||++|||+|++ +|+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5654 4688889999999999999999997 599999999999999999999999999986 4677764
No 395
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.77 E-value=1.4e-18 Score=154.41 Aligned_cols=66 Identities=27% Similarity=0.329 Sum_probs=58.5
Q ss_pred HHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC-Cceec
Q 016798 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGH-HTVRE 381 (382)
Q Consensus 310 i~~lp~Gldt~vge~G~~lSgGq~QrialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~-~TvI~ 381 (382)
+..+|+|-.|++ ||||||||++|||++. .+|+++++||||++||+.+.+.+.+.++++.++ +|+|.
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIi 153 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIV 153 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 566788988887 9999999999999985 799999999999999999999999999988654 67653
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.77 E-value=2.3e-18 Score=151.63 Aligned_cols=179 Identities=23% Similarity=0.253 Sum_probs=126.8
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC-CCH-----
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-IRL----- 258 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~-~~~----- 258 (382)
...|+++++.|+|+..+ |++-|+|+++++|....+||.||||||||+|+|.|-.-.-.|.|.++|.+--. -..
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 35799999999999765 79999999999999999999999999999999999888888999999986432 111
Q ss_pred -----HHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 -----DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 -----~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|++.++.--.-|.--+-++.+ +.++-. ..+.++-++..+. +|-.+.=+-..+|-|||
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~-mifgV~--g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVG--GDDPERREKLIDI-------------LDIDLRWRMHKVSDGQR 153 (291)
T ss_pred eeEecccccccccccccccccccccHHH-HHhhcc--CCChhHhhhhhhh-------------eeccceEEEeeccccch
Confidence 12333333322111111113322 223321 1122222222222 23223334468999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
+|+.|+..|++.=++|+|||.|--||.-.+..+++-+++-.. +.|++
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIV 202 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIV 202 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 999999999999999999999999999999999999988664 45654
No 397
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=1.6e-18 Score=153.23 Aligned_cols=177 Identities=22% Similarity=0.349 Sum_probs=135.5
Q ss_pred EEEEeEEEEeC--CCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC----CCceEEEcCEeCCCCCHHHH
Q 016798 188 VKFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 188 i~~~~v~f~y~--~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~ 261 (382)
+.++|++..+. .+...+++++|+++..||+-++||+||||||-++|.|+|..+. +.-+..+|+.++-.+++...
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 34566665553 3334589999999999999999999999999999999998864 45678899999999998887
Q ss_pred hc----ceEEecCCCcc-c--ccc----HHHHHcCC----CCCC--CCCHHHHHHHHHHcChHH---HHHhCCCCccccc
Q 016798 262 RR----HVGLVSQDITL-F--SGT----VAENIGYR----DLMT--KIDMERVEHTARTANADE---FVRTLPQGYNTHI 321 (382)
Q Consensus 262 r~----~i~~v~Q~~~l-f--~~t----i~eNi~~~----~~~~--~~~~~~~~~~~~~~~l~~---~i~~lp~Gldt~v 321 (382)
|+ .|++++|+|.- . +.+ +-+||-.. +... .....+..+.++++|+.| ...+.|
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP------- 156 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP------- 156 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc-------
Confidence 74 58899999972 2 223 33454211 0000 112345567788888864 334444
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
..|--||-|++.||-|+..+|++||-||||+++|+.|..+|.+.|.+.-+
T Consensus 157 ----~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQ 206 (330)
T COG4170 157 ----YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQ 206 (330)
T ss_pred ----chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhc
Confidence 67888999999999999999999999999999999999999999988765
No 398
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=9.9e-19 Score=187.96 Aligned_cols=169 Identities=27% Similarity=0.371 Sum_probs=138.1
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC---CCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-c
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-G 277 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ 277 (382)
..+|+|+|.-++||+.+.+.||.|||||||++.++|-.+. ..|+|.+||.+.++... ++.++|++|+...|+ .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3689999999999999999999999999999999998764 35799999999998766 778999999888775 4
Q ss_pred cHHHHHcCCCC----CC---CCCHHHHH-----HHHHHcChHHHHHhCCCCcccccCCC-CCCCChHHHHHHHHHHHccC
Q 016798 278 TVAENIGYRDL----MT---KIDMERVE-----HTARTANADEFVRTLPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 278 ti~eNi~~~~~----~~---~~~~~~~~-----~~~~~~~l~~~i~~lp~Gldt~vge~-G~~lSgGq~QrialaRall~ 344 (382)
||||-+.|... .. +.+..+.. ..++.. .|....||.||.+ ....|||||.|+++|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkil-------GL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL-------GLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHh-------CchhhccceecccccccccCcccceeeeeeeeec
Confidence 99999976421 11 12222211 233333 4445789999987 57899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
+++++.+||+|.|||+.|.-++.++|++..+ +.|.+
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~ 315 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATAL 315 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEE
Confidence 9999999999999999999999999998764 45554
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.75 E-value=2e-18 Score=167.50 Aligned_cols=170 Identities=31% Similarity=0.391 Sum_probs=116.3
Q ss_pred eEEEEeCCCCCCccceeeEE-eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE-----------EcCEeCCCC---
Q 016798 192 NISFKYADNMPLVLDQLNLH-IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNI--- 256 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~-i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~-----------~~g~~~~~~--- 256 (382)
++..+|+.+. ++=..|- .++|+.+||+||||-||||.+|+|+|.+.|.=|+-- +-|..++++
T Consensus 79 e~vHRYg~Ng---FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVNG---FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCCc---eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 4567887653 2333343 347999999999999999999999999999877631 111111110
Q ss_pred -CHHHHh--cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 257 -RLDSLR--RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 257 -~~~~~r--~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
-...+| .++-||.--|-.+.|++.|-+.-.+. .-..++.++.| +++..+..+-.+|||||-
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de--------------~g~~devve~l--~L~nvl~r~v~~LSGGEL 219 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE--------------RGKFDEVVERL--GLENVLDRDVSELSGGEL 219 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh--------------cCcHHHHHHHh--cchhhhhhhhhhcCchHH
Confidence 000111 12334444455566666665532111 11233444444 455555567789999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
||+|||-|++++++++++|||||-||...+....+.++++.+ +++||
T Consensus 220 Qr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~Vi 267 (591)
T COG1245 220 QRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI 267 (591)
T ss_pred HHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEE
Confidence 999999999999999999999999999999999999999987 57776
No 400
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.73 E-value=2.8e-18 Score=138.40 Aligned_cols=75 Identities=24% Similarity=0.151 Sum_probs=70.7
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
++|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.+++++|+ +|.+||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999999988888889999998 999999999
Q ss_pred HcC
Q 016798 283 IGY 285 (382)
Q Consensus 283 i~~ 285 (382)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 976
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.73 E-value=1.7e-17 Score=159.45 Aligned_cols=154 Identities=30% Similarity=0.433 Sum_probs=118.7
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC--------CCCCCceEEEcCEeCCCCCHHHHhcceEEecC--CC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--------YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ--DI 272 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~--------~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q--~~ 272 (382)
.+|+|+||+|++|+.++|||+|||||||++++|+|. |+|++|.|.+--..++ +.+|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCccccc
Confidence 579999999999999999999999999999999984 7899999986432222 23333 33
Q ss_pred ccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEe
Q 016798 273 TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352 (382)
Q Consensus 273 ~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililD 352 (382)
.+=..|+.|.+.--. -|...-.+.++.+++.|-+.- . ..-..||-|||-|..||+++...|.+++.|
T Consensus 466 ~f~~~tilehl~s~t----GD~~~AveILnraGlsDAvly-----R----r~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 466 EFGEVTILEHLRSKT----GDLNAAVEILNRAGLSDAVLY-----R----RKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred ccCchhHHHHHhhcc----CchhHHHHHHHhhccchhhhh-----h----ccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 333448999884211 122334567888888764421 1 123689999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHh--CCCcee
Q 016798 353 EATSALDSRSELLVRQAVDRLL--GHHTVR 380 (382)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~--~~~TvI 380 (382)
|..|.||..|...+.+.|.++. .+-|.+
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTli 562 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLI 562 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 9999999999999999999887 355554
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=2e-17 Score=151.27 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=92.2
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hc-----ceEEecCCCcccccc-
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RR-----HVGLVSQDITLFSGT- 278 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~-----~i~~v~Q~~~lf~~t- 278 (382)
+++.++..+| ..+|+|+||||||||+..|.-..-...... ... -...++ +. .|-...+.. ...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 4455555443 668999999999999999875552211100 000 011111 10 111111110 000
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH----ccCCCCEEEEeCc
Q 016798 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA----LYQNSSVLILDEA 354 (382)
Q Consensus 279 i~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa----ll~~~~ililDEp 354 (382)
..+|+.+ -.+.+.+.+....... +.+..+|.+.+.. ..+...||||||||+.+|++ ++.+|+++|+|||
T Consensus 85 ~~~n~~~-----~~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP 157 (213)
T cd03277 85 QVDNLCQ-----FLPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEI 157 (213)
T ss_pred ccCCceE-----EEchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecc
Confidence 2233321 1234444444444333 5556677665432 44678999999999887654 4689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhC
Q 016798 355 TSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~~ 375 (382)
|++||+.+...+.+.+++..+
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~ 178 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETAC 178 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhh
Confidence 999999999999999988864
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.71 E-value=2.7e-17 Score=149.00 Aligned_cols=119 Identities=20% Similarity=0.230 Sum_probs=84.1
Q ss_pred cceeeEEeeCCC-EEEEECCCCCcHHHHHHHHh--------hCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc
Q 016798 205 LDQLNLHIRAGE-TVALIGPSGGGKSTLAKLLL--------RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (382)
Q Consensus 205 l~~isl~i~~G~-~~aivG~sGsGKSTl~~ll~--------g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 275 (382)
+-++||++.+|+ +++|+||||||||||++.|. |++-|....+ .++|+.|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe-
Confidence 457899999996 69999999999999999998 5554432111 23444443210
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcC
Q 016798 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (382)
Q Consensus 276 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpt 355 (382)
++. ++. +.++-..+|+|+||+..+++++ .+|+++++||||
T Consensus 79 ---------lg~------~~~------------------------l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~ 118 (200)
T cd03280 79 ---------IGD------EQS------------------------IEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELG 118 (200)
T ss_pred ---------cCc------hhh------------------------hhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCC
Confidence 000 000 1122358999999999999985 899999999999
Q ss_pred CCCCHHHHHHHHH-HHHHHhC-CCceec
Q 016798 356 SALDSRSELLVRQ-AVDRLLG-HHTVRE 381 (382)
Q Consensus 356 s~LD~~~~~~i~~-~l~~~~~-~~TvI~ 381 (382)
+++|+.+...+.. .++++.+ +.|+|.
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~ 146 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIA 146 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999888864 5666553 566653
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=7.5e-17 Score=153.27 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=49.6
Q ss_pred CCChHHHHHHHHHHHccC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 327 SLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.|||||+||+++||+++. +|++++|||||++||+.+...+.+.++++.+++|+|+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~ 228 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLC 228 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 599999999999997653 9999999999999999999999999999877777763
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.69 E-value=2e-17 Score=149.66 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=84.1
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-ccHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 280 (382)
+.+++|++++. |++++|+||||||||||+|.|+|... +...|.++... .+++|...+|. .|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 35788887765 79999999999999999999988553 23355554321 25667555664 4999
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
||+.++... ..++.. .+.+.++.+. +.+|+++|+||||+++|+
T Consensus 78 d~l~~~~s~---~~~e~~------~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~ 120 (199)
T cd03283 78 DDLRDGISY---FYAELR------RLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNS 120 (199)
T ss_pred hccccccCh---HHHHHH------HHHHHHHhcc----------------------------CCCCeEEEEecccCCCCH
Confidence 999876421 122221 1233333321 179999999999999999
Q ss_pred HHHHHHHH-HHHHHhC-CCcee
Q 016798 361 RSELLVRQ-AVDRLLG-HHTVR 380 (382)
Q Consensus 361 ~~~~~i~~-~l~~~~~-~~TvI 380 (382)
.+...+.. .++++.+ +.|+|
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tii 142 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGI 142 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
Confidence 98876654 4565543 45554
No 406
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=5e-16 Score=147.12 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=97.6
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---------------------------------------Cc-
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---------------------------------------SG- 244 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---------------------------------------~G- 244 (382)
+++.++++.+| +.+|+|||||||||++.+|.-+.... +|
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34566777665 68899999999999998875433110 01
Q ss_pred -eEEEcCEeCCCCCHHHH---hcceEEecCCCccccccHHHHHcCCCCCC-CCCH------HHHHHHHHHcChHHHHHhC
Q 016798 245 -CILVDDHDVQNIRLDSL---RRHVGLVSQDITLFSGTVAENIGYRDLMT-KIDM------ERVEHTARTANADEFVRTL 313 (382)
Q Consensus 245 -~i~~~g~~~~~~~~~~~---r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~-~~~~------~~~~~~~~~~~l~~~i~~l 313 (382)
.+.+||..+.. ..++ -..+.+.+++..|+.++-.+...+-+... .... +++.++++. ..++.. -
T Consensus 91 ~~~~ing~~~~~--l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~--~~~~~~-g 165 (270)
T cd03242 91 RKARLNGIKVRR--LSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQ--RNALLK-G 165 (270)
T ss_pred eEEEECCeeccC--HHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HHHHhC-C
Confidence 23345554433 2233 33466666666677443333222211100 0011 112222221 111111 3
Q ss_pred CCCcccccCCCC----CCCChHHHHHHHHHHHcc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 314 PQGYNTHIGPRG----SSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 314 p~Gldt~vge~G----~~lSgGq~QrialaRall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
|+..+..+.-++ ..+|+||+|++++||+++ .+|++++|||||++||+.....+.+.+++.
T Consensus 166 ~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 166 PHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred CChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC
Confidence 554444433333 348999999999999974 799999999999999999999999999765
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.65 E-value=2.9e-16 Score=137.47 Aligned_cols=115 Identities=25% Similarity=0.312 Sum_probs=80.1
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE-EecCCCccccccHHHHHcCCC
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG-LVSQDITLFSGTVAENIGYRD 287 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eNi~~~~ 287 (382)
++.+.++.++.|+|||||||||+++.+....-...|.+.... +. +.+ .+++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 444455679999999999999999998766655555544310 00 011 111111111
Q ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC----CCCEEEEeCcCCCCCHHHH
Q 016798 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSE 363 (382)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~----~~~ililDEpts~LD~~~~ 363 (382)
+. +. .+||+||+||+++||++.. +|+++++|||++++|+...
T Consensus 72 ----------------------i~-------~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~ 117 (162)
T cd03227 72 ----------------------IF-------TR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDG 117 (162)
T ss_pred ----------------------eh-------he-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHH
Confidence 00 00 1299999999999999986 7899999999999999999
Q ss_pred HHHHHHHHHHhC-CCcee
Q 016798 364 LLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 364 ~~i~~~l~~~~~-~~TvI 380 (382)
..+.+.+.++.+ ++|+|
T Consensus 118 ~~l~~~l~~~~~~~~~vi 135 (162)
T cd03227 118 QALAEAILEHLVKGAQVI 135 (162)
T ss_pred HHHHHHHHHHHhcCCEEE
Confidence 999999988754 35655
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.61 E-value=1.1e-15 Score=140.58 Aligned_cols=125 Identities=20% Similarity=0.184 Sum_probs=87.6
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE-EecCCCccccccHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG-LVSQDITLFSGTVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 280 (382)
..+.+|+++++++|++++|+||||+||||+++.++- ..+..++| +||.+...++ +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 358899999999999999999999999999999981 12344555 6666643221 11
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc--cCCCCEEEEeCc---C
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEA---T 355 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal--l~~~~ililDEp---t 355 (382)
+.+ +...++.+.+ ...+|.|++|+..+++++ +.+|+++||||| |
T Consensus 74 ~~i-----------------l~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 74 DCI-----------------LARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred cee-----------------Eeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 111 1122222111 257999999999999999 999999999999 9
Q ss_pred CCCCHHHHHHHH-HHHHHHhCCCceec
Q 016798 356 SALDSRSELLVR-QAVDRLLGHHTVRE 381 (382)
Q Consensus 356 s~LD~~~~~~i~-~~l~~~~~~~TvI~ 381 (382)
+++|........ +.+.+ ..++|+|+
T Consensus 123 ~~lD~~~~~~~il~~l~~-~~~~~vli 148 (222)
T cd03285 123 STYDGFGLAWAIAEYIAT-QIKCFCLF 148 (222)
T ss_pred ChHHHHHHHHHHHHHHHh-cCCCeEEE
Confidence 999998664332 44433 23567653
No 409
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.59 E-value=3.4e-15 Score=139.19 Aligned_cols=145 Identities=23% Similarity=0.316 Sum_probs=95.9
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE--EEcCEeCCCCCHHHHhcce--EEecCCCccccccHHHHH
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI--LVDDHDVQNIRLDSLRRHV--GLVSQDITLFSGTVAENI 283 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i--~~~g~~~~~~~~~~~r~~i--~~v~Q~~~lf~~ti~eNi 283 (382)
.=+.+.+||+++|+||+|+|||||++.+++..+...+++ .+-...-...+..++.+.+ .+|-.+.. .+....+
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~---~~~~~~~ 85 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD---EPPERHV 85 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC---CCHHHHH
Confidence 335788999999999999999999999999987754333 3222221224555555444 11111100 0111111
Q ss_pred cCCCCCCCCCHHHHHHHHH---HcC-----hHHHHHhCCCCcccccCCCCCCCChHH--------HHHHHHHHHccCCCC
Q 016798 284 GYRDLMTKIDMERVEHTAR---TAN-----ADEFVRTLPQGYNTHIGPRGSSLSGGQ--------RQRLAIARALYQNSS 347 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~---~~~-----l~~~i~~lp~Gldt~vge~G~~lSgGq--------~QrialaRall~~~~ 347 (382)
.. ...+.+.++ ..+ +-|.+.++|+++++..++.|..+|||| +||+++||+++++++
T Consensus 86 ~~--------~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gs 157 (249)
T cd01128 86 QV--------AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGS 157 (249)
T ss_pred HH--------HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCc
Confidence 00 001111111 112 235688999999999999999999999 999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHH
Q 016798 348 VLILDEATSALDSRSELL 365 (382)
Q Consensus 348 ililDEpts~LD~~~~~~ 365 (382)
|.+| ||+.+|..++..
T Consensus 158 It~l--~T~~~d~~~~~~ 173 (249)
T cd01128 158 LTII--ATALVDTGSRMD 173 (249)
T ss_pred eEEe--eeheecCCCccc
Confidence 9999 999999766653
No 410
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.56 E-value=2.9e-14 Score=147.11 Aligned_cols=65 Identities=32% Similarity=0.495 Sum_probs=59.0
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCcee
Q 016798 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 316 Gldt-~vge~G~~lSgGq~QrialaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI 380 (382)
||.. .+|.....|||||.|||-||.-|.++. -++||||||.||-.+.-+++++.|.++. ++.|||
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTVi 879 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVI 879 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 5554 689999999999999999999999988 8999999999999999999999999986 477876
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=6e-15 Score=142.73 Aligned_cols=177 Identities=27% Similarity=0.417 Sum_probs=109.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh--CCCCCCceEEEcCEeCCCCCHHHH---
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDSL--- 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~--- 261 (382)
+|.++|.+.+..+ +..+.|-||.|-.|..+++|||||-|||||++-|+- |--|..=+|+++-+.+..-+...+
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 6888997776654 458899999999999999999999999999999873 333433345544443321110000
Q ss_pred ----hcceEEecCCCccccccHHHHHcCCCCCCCCCHH---HHHHHHHHcCh-------HHHHHhCCCCcccccCCCC-C
Q 016798 262 ----RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME---RVEHTARTANA-------DEFVRTLPQGYNTHIGPRG-S 326 (382)
Q Consensus 262 ----r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~---~~~~~~~~~~l-------~~~i~~lp~Gldt~vge~G-~ 326 (382)
.++..++..+.-| ...+--|+. .-.+ ++.+.++..|. ...+..| |++-.+-++. .
T Consensus 342 l~aD~kRl~lLeee~~L-----~~q~e~Gd~---taaErl~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rPt~ 411 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKL-----MSQIEEGDT---TAAERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTT 411 (807)
T ss_pred HHhhHHHHHHHHHHHHH-----HHHHHcCch---HHHHHHHHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCCcc
Confidence 0011111111000 000101110 0011 12222222222 1233333 5666665554 6
Q ss_pred CCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 327 ~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
.+|||-|-|++|||||+-.|-+|.|||||++||....-.+-+.|..+++
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK 460 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK 460 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh
Confidence 8999999999999999999999999999999999988888788877643
No 412
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.52 E-value=4.9e-14 Score=158.88 Aligned_cols=66 Identities=27% Similarity=0.372 Sum_probs=58.3
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHccCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 316 Gldt-~vge~G~~lSgGq~QrialaRall~~---~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||.. .+|.....|||||.|||-||.-|.++ +.++||||||.+|++..-+++.+.|+++. .+.|+|.
T Consensus 1687 GLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tviv 1757 (1809)
T PRK00635 1687 GLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 (1809)
T ss_pred CCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 4443 58999999999999999999999876 78999999999999999999999999986 4788873
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.51 E-value=1.7e-14 Score=130.76 Aligned_cols=121 Identities=20% Similarity=0.265 Sum_probs=74.1
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhC-CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR 286 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~ 286 (382)
.++++.+|++++|+|||||||||+++.|++. +.+..|..... .+..+++..|....|. ..+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-----------~~~~i~~~dqi~~~~~--~~d~i--- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-----------ESASIPLVDRIFTRIG--AEDSI--- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-----------cccccCCcCEEEEEec--Ccccc---
Confidence 4555668999999999999999999999943 32333321110 1223444333221111 11111
Q ss_pred CCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHH
Q 016798 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i 366 (382)
.++-..++++++ |+..+.+.+.+|+++|+||||+++|+.....+
T Consensus 86 -----------------------------------~~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 86 -----------------------------------SDGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred -----------------------------------cCCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 111134555555 57777788899999999999999999877766
Q ss_pred HHH-HHHHhC-CCcee
Q 016798 367 RQA-VDRLLG-HHTVR 380 (382)
Q Consensus 367 ~~~-l~~~~~-~~TvI 380 (382)
... ++.+.+ +.++|
T Consensus 130 ~~~ll~~l~~~~~~vi 145 (202)
T cd03243 130 AYAVLEHLLEKGCRTL 145 (202)
T ss_pred HHHHHHHHHhcCCeEE
Confidence 544 444432 55655
No 414
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=4.6e-14 Score=159.54 Aligned_cols=94 Identities=24% Similarity=0.358 Sum_probs=84.9
Q ss_pred cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH------HHHHHHHccCCCC
Q 016798 274 LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ------RLAIARALYQNSS 347 (382)
Q Consensus 274 lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q------rialaRall~~~~ 347 (382)
.|+||++|||.+ ++ +.+++ ..+++.++.++|+..+|.| ||.++..| .||||||| |++||||++.+|+
T Consensus 1153 ~~~~~~~~~i~~-~~--~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~ 1225 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS--DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCG 1225 (1311)
T ss_pred HcCccHHHHhhc-CC--CCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCC
Confidence 499999999999 65 33444 6888899999999999999 99999876 89999999 9999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
+|+|||||++||+.+...+.+.|..+.
T Consensus 1226 il~lDEPt~~lD~~~~~~l~~~l~~~~ 1252 (1311)
T TIGR00606 1226 IIALDEPTTNLDRENIESLAHALVEII 1252 (1311)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999888763
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.50 E-value=1.2e-13 Score=133.52 Aligned_cols=153 Identities=25% Similarity=0.420 Sum_probs=109.7
Q ss_pred EEeCCCCCCccceeeEEeeCCC-----EEEEECCCCCcHHHHHHHHhhCCCCCCce-EEEcCEeCCCCCHHHHhcceEEe
Q 016798 195 FKYADNMPLVLDQLNLHIRAGE-----TVALIGPSGGGKSTLAKLLLRLYDPLSGC-ILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 195 f~y~~~~~~~l~~isl~i~~G~-----~~aivG~sGsGKSTl~~ll~g~~~~~~G~-i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
|.||+- ...+-+..|.|+.|+ ++...|+||.||||++++++|..+|++|. |-. + .++|=
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-------l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-------L-------NVSYK 407 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-------c-------ceecc
Confidence 556654 346789999999996 57889999999999999999999998763 321 1 36677
Q ss_pred cCCCc-cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 269 SQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 269 ~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
||.-. =|.+|+|.-+.---...-.+..-+.++++-..+++.+ +....+|||||.||+|+|-+|=+.++
T Consensus 408 pqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~-----------dqevq~lSggelQRval~KOGGKpAd 476 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENII-----------DQEVQGLSGGELQRVALALCLGKPAD 476 (592)
T ss_pred ccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHH-----------hHHhhcCCchhhHHHHHHHhcCCCCc
Confidence 77654 4778888765210000111223333444444443333 34568999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
+++.|||.+-||++.+..--+.+++.
T Consensus 477 vYliDEpsAylDSeQRi~AskvikRf 502 (592)
T KOG0063|consen 477 VYLIDEPSAYLDSEQRIIASKVIKRF 502 (592)
T ss_pred eEEecCchhhcChHHHHHHHHHHHHH
Confidence 99999999999999877666666654
No 416
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.50 E-value=6.8e-14 Score=126.98 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=84.6
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE-ecCCCccccccHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL-VSQDITLFSGTVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~-v~Q~~~lf~~ti~ 280 (382)
+.+.+|+++++++|+.++|+||||+||||+++.++++. +..++|+ ||-.. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46899999999999999999999999999999998874 2223332 21111 122555
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
|||...- +.+..+.++...+|+|++|+ ..+-+++.+|++++||||++++|+
T Consensus 73 d~I~~~~----------------------------~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 73 NRLLSRL----------------------------SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hheeEec----------------------------CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 6553211 01111223446899999975 555567889999999999999999
Q ss_pred HHHHHHHH-HHHHHh-CCCcee
Q 016798 361 RSELLVRQ-AVDRLL-GHHTVR 380 (382)
Q Consensus 361 ~~~~~i~~-~l~~~~-~~~TvI 380 (382)
.....+.. .++.+. .++++|
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i 145 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVF 145 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEE
Confidence 76444433 344443 255655
No 417
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.49 E-value=2.3e-12 Score=118.95 Aligned_cols=140 Identities=29% Similarity=0.403 Sum_probs=122.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+.++++||.++++++++.|++.++..++.++.++..++..+..++..+.+.|.++|+++||+||.|+.+.+++++..++.
T Consensus 134 ~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~ 213 (275)
T PF00664_consen 134 ILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKY 213 (275)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLL-VSGGSFDGCSLVSFITSLVFMIEPI 142 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l-v~~g~~t~g~l~~~~~~~~~~~~~~ 142 (382)
.+...+............... ....++++++|+++ +..|.+++|.++++..+...+..|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 214 RKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 777777666655555444433 34467778889999 9999999999999999999998885
No 418
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.45 E-value=1e-13 Score=126.63 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcC-----CCCCHHHHHHHHHHHHHHh
Q 016798 331 GQRQRLAIARALYQNSSVLILDEAT-----SALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpt-----s~LD~~~~~~i~~~l~~~~ 374 (382)
-|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999999875
No 419
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.44 E-value=5.6e-13 Score=125.68 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=80.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC-HHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCH
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM 294 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~ 294 (382)
+.++|+||+|||||||++.|+|++.|++|+|.++|.++..++ ..++...++++||...--..++.||. + .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~-----k 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P-----K 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h-----H
Confidence 678999999999999999999999999999999999998664 45777788999996532233454442 0 0
Q ss_pred HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 295 ~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
.+ + -..++|+ .+|+++++|||++ ...+...++.+.
T Consensus 183 ~~--------~-----------------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~ 217 (270)
T TIGR02858 183 AE--------G-----------------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH 217 (270)
T ss_pred HH--------H-----------------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh
Confidence 00 0 1345565 4999999999974 233444445555
Q ss_pred CCCceec
Q 016798 375 GHHTVRE 381 (382)
Q Consensus 375 ~~~TvI~ 381 (382)
.+.|+|.
T Consensus 218 ~G~~vI~ 224 (270)
T TIGR02858 218 AGVSIIA 224 (270)
T ss_pred CCCEEEE
Confidence 6777763
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.36 E-value=3.1e-12 Score=136.66 Aligned_cols=135 Identities=22% Similarity=0.253 Sum_probs=88.6
Q ss_pred cEEEEeEEEEeCCCCCCccce-----eeEEeeCC-CEEEEECCCCCcHHHHHHHHhhC-CCCCCceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQ-----LNLHIRAG-ETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~-----isl~i~~G-~~~aivG~sGsGKSTl~~ll~g~-~~~~~G~i~~~g~~~~~~~~~ 259 (382)
.+.++++.+ |++++ +|+++.++ ++++|+||||+||||++|.++|. +.+..|-
T Consensus 295 ~i~l~~~rh-------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~-------------- 353 (771)
T TIGR01069 295 KIILENARH-------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI-------------- 353 (771)
T ss_pred CEEEccccC-------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC--------------
Confidence 577777654 23333 68888877 99999999999999999999987 3444441
Q ss_pred HHhcceEEecCCCc-cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 260 SLRRHVGLVSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+||.... .+ .+.+++.. ..++++ .+ .++-..||+|++|+..+
T Consensus 354 -------~Vpa~~~~~~--~~~d~i~~-----~i~~~~------------si-----------~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 354 -------PIPANEHSEI--PYFEEIFA-----DIGDEQ------------SI-----------EQNLSTFSGHMKNISAI 396 (771)
T ss_pred -------CccCCccccc--cchhheee-----ecChHh------------HH-----------hhhhhHHHHHHHHHHHH
Confidence 3333221 01 11222210 011110 01 11236799999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHh-CCCcee
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVR-QAVDRLL-GHHTVR 380 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~-~~~TvI 380 (382)
++++ .+|+++|||||++++|+.....+. ..++.+. .+.++|
T Consensus 397 l~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~vi 439 (771)
T TIGR01069 397 LSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVL 439 (771)
T ss_pred HHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 9987 789999999999999999888884 4455543 355555
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.35 E-value=4.1e-12 Score=125.23 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=44.0
Q ss_pred CCCChHHHHHHHHHHHcc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 326 SSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 326 ~~lSgGq~QrialaRall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
..+|.||+|++++|+++. ++|+|++||||+|+||+.....+.+.+.+.
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~ 328 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL 328 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc
Confidence 578999999999999885 799999999999999999999999988653
No 422
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.34 E-value=2.5e-12 Score=117.90 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=75.3
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (382)
..+.+|+++++++ ++++|+|||||||||+++.+++..-. |+ .|..+ +. .+..++++.| +|.. ++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---PA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---cc--ccceecceee---EeccCCch
Confidence 3578999999887 99999999999999999999875421 11 11111 11 1345676654 3432 556
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc--cCCCCEEEEeCc---C
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEA---T 355 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal--l~~~~ililDEp---t 355 (382)
||+..+. |-=...+..+++++ +.+|++++|||| |
T Consensus 84 ~~ls~g~-----------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 84 DDLAGGR-----------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhhccCc-----------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 6654331 11111122233333 579999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHhCCCcee
Q 016798 356 SALDSRSE-LLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 356 s~LD~~~~-~~i~~~l~~~~~~~TvI 380 (382)
+++|.... ..+.+.+.+. .+.|+|
T Consensus 123 ~~lD~~~~~~~il~~l~~~-~~~~vi 147 (216)
T cd03284 123 STYDGLSIAWAIVEYLHEK-IGAKTL 147 (216)
T ss_pred ChHHHHHHHHHHHHHHHhc-cCCcEE
Confidence 99998652 4455555432 255655
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.32 E-value=4.5e-12 Score=116.20 Aligned_cols=53 Identities=32% Similarity=0.446 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHH----ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCce
Q 016798 327 SLSGGQRQRLAIARA----LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379 (382)
Q Consensus 327 ~lSgGq~QrialaRa----ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~Tv 379 (382)
.||||||-+++||=- -+.+.|++||||+.++||......+.+.|++..++.-+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ 192 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQF 192 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999843 35688999999999999999999999999998755433
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=8.8e-12 Score=113.98 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=78.0
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh--hCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc--c
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG--T 278 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~--g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~--t 278 (382)
.+-+|++++=..+.+++|+||||+||||+++.+. ... +..|...... ...++|..|...-+.. |
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 3556666542223799999999999999999998 333 5566655421 2247777775432211 2
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCC
Q 016798 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358 (382)
Q Consensus 279 i~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~L 358 (382)
+.+++ ..| .-+-||+++|++++.+|++++||||++++
T Consensus 85 i~~~~-----------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 85 VSSGQ-----------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred hhhcc-----------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 22111 011 23559999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHh
Q 016798 359 DSRSELLV-RQAVDRLL 374 (382)
Q Consensus 359 D~~~~~~i-~~~l~~~~ 374 (382)
|+.....+ ...++++.
T Consensus 122 d~~~~~~~~~ail~~l~ 138 (213)
T cd03281 122 DTEDGAGLLIATIEHLL 138 (213)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 98754444 45666664
No 425
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.22 E-value=5.8e-12 Score=136.44 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=58.3
Q ss_pred Ccccc-cCCCCCCCChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 316 GYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 316 Gldt~-vge~G~~lSgGq~QrialaRall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++.. +.....+|||||+||++|||||..+| +++||||||++||+.....+.+.|+++.+ +.|+|+
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIv 546 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIV 546 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 66543 56777899999999999999999997 89999999999999999999999999864 678774
No 426
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.20 E-value=8.7e-12 Score=124.11 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=56.0
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-eEEEcCEeCCCCCHHHHhcceEEecCCC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 272 (382)
.+|++||+++++||+++|+||||||||||++ .|+..|++| +|.++|.++...+...+.. .-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence 4799999999999999999999999999999 788888888 7999999998766544322 11777765
No 427
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=1.3e-11 Score=133.41 Aligned_cols=66 Identities=26% Similarity=0.379 Sum_probs=57.6
Q ss_pred Ccccc-cCCCCCCCChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 316 GYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 316 Gldt~-vge~G~~lSgGq~QrialaRall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++.. ++....+|||||+||++|||||..+| +++||||||++||+.+...+.+.|+++.+ ++|||.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIv 544 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIV 544 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 55433 56778999999999999999999986 89999999999999999999999999864 678764
No 428
>PRK14079 recF recombination protein F; Provisional
Probab=99.16 E-value=1.6e-10 Score=113.36 Aligned_cols=48 Identities=27% Similarity=0.332 Sum_probs=43.8
Q ss_pred CCCChHHHHHHHHHHHcc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 326 SSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 326 ~~lSgGq~QrialaRall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
.-+|+||++++++|+.++ .+|++++||||+|.||......+.+.|...
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~ 318 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL 318 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC
Confidence 457999999999999998 899999999999999999999998888543
No 429
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.16 E-value=3.9e-11 Score=107.31 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHhC--CCcee
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR-QAVDRLLG--HHTVR 380 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~--~~TvI 380 (382)
...+|+|++|...+.+. +.+|+++|+|||++++|+.....+. ..++.+.+ +.++|
T Consensus 59 ~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~ii 116 (185)
T smart00534 59 LSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTL 116 (185)
T ss_pred ccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 45788887774333332 3499999999999999999776664 44555543 45655
No 430
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.12 E-value=4.5e-11 Score=124.58 Aligned_cols=83 Identities=29% Similarity=0.440 Sum_probs=67.8
Q ss_pred HHHHHHHcChHHHHHhCCCCcccccCCCC------CCCChHHHHHHHHHHHcc----------CCCCEEEEeCcC-CCCC
Q 016798 297 VEHTARTANADEFVRTLPQGYNTHIGPRG------SSLSGGQRQRLAIARALY----------QNSSVLILDEAT-SALD 359 (382)
Q Consensus 297 ~~~~~~~~~l~~~i~~lp~Gldt~vge~G------~~lSgGq~QrialaRall----------~~~~ililDEpt-s~LD 359 (382)
+.+.++..+. ++...+|+++++.+++.| ..||||||||++||||++ .+|+++|||||| ++||
T Consensus 433 ~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld 511 (562)
T PHA02562 433 INHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALD 511 (562)
T ss_pred HHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccc
Confidence 3444444432 344467889999998888 789999999999999987 599999999998 7899
Q ss_pred HHHHHHHHHHHHHHhCCCceec
Q 016798 360 SRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 360 ~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
..+...+.+.|+++ ++.|+|+
T Consensus 512 ~~~~~~~~~~l~~~-~~~~iii 532 (562)
T PHA02562 512 AEGTKALLSILDSL-KDTNVFV 532 (562)
T ss_pred hhHHHHHHHHHHhC-CCCeEEE
Confidence 99999999999998 6777763
No 431
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.10 E-value=8.8e-11 Score=113.97 Aligned_cols=147 Identities=29% Similarity=0.382 Sum_probs=98.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE-----------cCEeCCCC----CHHHHhc--ceEEecCCCccc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV-----------DDHDVQNI----RLDSLRR--HVGLVSQDITLF 275 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~-----------~g~~~~~~----~~~~~r~--~i~~v~Q~~~lf 275 (382)
++|+..++||.||-||||-++.++|-.+|.-|.-.- -|..+.++ ..+.++. ..-||.|-|-..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 379999999999999999999999999998775321 11111110 0111111 123444444444
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcC
Q 016798 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (382)
Q Consensus 276 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpt 355 (382)
.+++.+++.--. +.+...++++...+.... ......||||+-||.++|-+...++++.++|||.
T Consensus 178 k~~v~~~l~~~~-----~r~~~~~~~~~~~L~~~~-----------~re~~~lsggelqrfaia~~~vq~advyMFDEpS 241 (592)
T KOG0063|consen 178 KGTVGSLLDRKD-----ERDNKEEVCDQLDLNNLL-----------DREVEQLSGGELQRFAIAMVCVQKADVYMFDEPS 241 (592)
T ss_pred HHHHHHHHHHHh-----hcccHHHHHHHHHHhhHH-----------HhhhhhcccchhhhhhhhhhhhhhcceeEecCCc
Confidence 556666653211 111233344444443333 2345799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhC
Q 016798 356 SALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 356 s~LD~~~~~~i~~~l~~~~~ 375 (382)
|-||.+.+..-...|+.+..
T Consensus 242 sYLDVKQRLkaA~~IRsl~~ 261 (592)
T KOG0063|consen 242 SYLDVKQRLKAAITIRSLIN 261 (592)
T ss_pred ccchHHHhhhHHHHHHHhhC
Confidence 99999988888888888753
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.10 E-value=6.9e-10 Score=102.69 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=79.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHH-HHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL-AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
+.+++++..+++ .+++|+++.|+|++||||||+ +++++++.++....+.+... .+.+++
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~~----- 67 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTEF----- 67 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHH-----
Confidence 556666655543 278999999999999999999 68999887654333333211 111111
Q ss_pred EecCCCccccccHHHHH-cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc--
Q 016798 267 LVSQDITLFSGTVAENI-GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY-- 343 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall-- 343 (382)
.++. .+|- +.++ +... +.+. .+ +-...+|+++.++-.+.+.+-
T Consensus 68 -------------~~~~~~~g~-----~~~~------------~~~~--~~l~-~~-~~~~~~~~~~~~~~~l~~il~~~ 113 (230)
T PRK08533 68 -------------IKQMMSLGY-----DINK------------KLIS--GKLL-YI-PVYPLLSGNSEKRKFLKKLMNTR 113 (230)
T ss_pred -------------HHHHHHhCC-----chHH------------Hhhc--CcEE-EE-EecccccChHHHHHHHHHHHHHH
Confidence 1111 1110 1111 1100 0000 00 000235666555544444332
Q ss_pred --CCCCEEEEeCcCCCC----CHHHHHHHHHHHHHHhC-CCcee
Q 016798 344 --QNSSVLILDEATSAL----DSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 344 --~~~~ililDEpts~L----D~~~~~~i~~~l~~~~~-~~TvI 380 (382)
.+|+++++||||+.+ |+...+.+.+.++.+.+ ++|++
T Consensus 114 ~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi 157 (230)
T PRK08533 114 RFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVII 157 (230)
T ss_pred HhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEE
Confidence 369999999999999 77777788888887754 56665
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=4.1e-10 Score=103.47 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=42.7
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh-CCCCCCceEEEc
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVD 249 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g-~~~~~~G~i~~~ 249 (382)
+.+.+|+++++++|++++|+||||+||||+++.+++ .+.++.|.....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 468899999999999999999999999999999999 667888886543
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.06 E-value=1.3e-09 Score=116.90 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=44.7
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHh-CCCcee
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-VDRLL-GHHTVR 380 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~-~~~TvI 380 (382)
-..+|+|++|+..++|++ .+|+++|||||++|+|+.....+... ++.+. .+.++|
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vI 444 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKII 444 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 368999999999999999 89999999999999999988777654 44443 355655
No 435
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.00 E-value=4.5e-09 Score=105.49 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=93.7
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe---CCC-----CCHHHHhcceEEecCCCc
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD---VQN-----IRLDSLRRHVGLVSQDIT 273 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~---~~~-----~~~~~~r~~i~~v~Q~~~ 273 (382)
..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|.+ +.+ ++...+++.|.++.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 3589999 9999999999999999999999999999999999999995544 442 344556778888865221
Q ss_pred cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh-HHHHH-HHHHHHccCCCCEEEE
Q 016798 274 LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG-GQRQR-LAIARALYQNSSVLIL 351 (382)
Q Consensus 274 lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg-Gq~Qr-ialaRall~~~~ilil 351 (382)
...+++..+.-.+.+.|+... +|.|-.+-= .+++- -|.|| +++ .+.+||
T Consensus 225 ------------------~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~--Dsltr~A~A~rEisl---~~ge~P---- 275 (438)
T PRK07721 225 ------------------PALMRIKGAYTATAIAEYFRD--QGLNVMLMM--DSVTRVAMAQREIGL---AVGEPP---- 275 (438)
T ss_pred ------------------CHHHHHHHHHHHHHHHHHHHH--CCCcEEEEE--eChHHHHHHHHHHHH---hcCCCC----
Confidence 112334344444445555553 355543321 12210 11111 111 134454
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh
Q 016798 352 DEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 352 DEpts~LD~~~~~~i~~~l~~~~ 374 (382)
.|+|+|+.....+.+.++++.
T Consensus 276 --~~~G~dp~~~~~l~~ller~~ 296 (438)
T PRK07721 276 --TTKGYTPSVFAILPKLLERTG 296 (438)
T ss_pred --ccccCCHHHHHHHHHHHHHhc
Confidence 689999999999999998876
No 436
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.99 E-value=1.8e-09 Score=105.96 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccc-----------eeeEEeeCCCEEEEECC
Q 016798 155 GEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLD-----------QLNLHIRAGETVALIGP 223 (382)
Q Consensus 155 ~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~-----------~isl~i~~G~~~aivG~ 223 (382)
...+.+|++++++.++.... ++....+.+.|+||+|.||+. +.+|+ |+++.|.+|+.++||||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~-----~~e~~~~ri~Fe~LTf~YP~e-r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGD-----DPEKAKNRVLFENLTPLYPNE-RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred ccccHhHHHHHhCCCccCCC-----CccccCCCeEEEEeeecCCCc-cceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 34567899999886554211 112335689999999999965 46896 99999999999999999
Q ss_pred CCCcHHHHHHHHhhCCCCC
Q 016798 224 SGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 224 sGsGKSTl~~ll~g~~~~~ 242 (382)
+|||||||++.|.+.+...
T Consensus 177 ~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCChhHHHHHHHHhhccc
Confidence 9999999999999988643
No 437
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.97 E-value=1.6e-09 Score=108.11 Aligned_cols=135 Identities=21% Similarity=0.164 Sum_probs=94.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++-+.++..|..+ ..++++ .|++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|..-.
T Consensus 130 ~~~r~~i~~~l~TG-iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------ 195 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------ 195 (432)
T ss_pred chheechhhccCCC-CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc------------
Confidence 45666677667543 357777 4999999999999999999999999999999998887776654432
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc---
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--- 343 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall--- 343 (382)
+++|.+. ..+...++. .|.+-..-.+-|.|+|+|.+.+.+..
T Consensus 196 -----------ev~e~~~--------------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 196 -----------EVKDFIR--------------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred -----------cHHHHHH--------------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 2333321 011111110 11122334788999999999999877
Q ss_pred ----CCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 016798 344 ----QNSSVLILDEATSALDSRSELLVRQAVDR 372 (382)
Q Consensus 344 ----~~~~ililDEpts~LD~~~~~~i~~~l~~ 372 (382)
.++-++++||+|...|+. ++|...+.+
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e 271 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKE 271 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcC
Confidence 778899999999999997 344444433
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.92 E-value=6e-09 Score=100.61 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=38.6
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~ 249 (382)
+++.+++|+.++|+|++|||||||+++|+++++|..|.+.++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 457788999999999999999999999999999999988885
No 439
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.91 E-value=2.3e-09 Score=107.14 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=77.4
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc---CEeCCCCCHHH-
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD---DHDVQNIRLDS- 260 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~---g~~~~~~~~~~- 260 (382)
++.++.++++..|..+ ..+++.++ +|.+||+++|+|+||||||||++.|+++.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 4568999999999755 46888886 999999999999999999999999999999999999885 56665554332
Q ss_pred ---HhcceEEecCCCc--------cccc-cHHHHHc
Q 016798 261 ---LRRHVGLVSQDIT--------LFSG-TVAENIG 284 (382)
Q Consensus 261 ---~r~~i~~v~Q~~~--------lf~~-ti~eNi~ 284 (382)
+++.|++|+|... -+.+ |+.|.++
T Consensus 215 ~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 215 ADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred HHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2357999999765 1222 6777764
No 440
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.89 E-value=4.9e-08 Score=80.92 Aligned_cols=100 Identities=42% Similarity=0.567 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCC-ceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~ 292 (382)
++..+.|+||+|+||||+++.++..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999987654 4444444332221111100
Q ss_pred CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHH
Q 016798 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368 (382)
Q Consensus 293 ~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~ 368 (382)
............+++..+..+++|-..+|+++++||+..-.+.........
T Consensus 51 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~ 101 (148)
T smart00382 51 -------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLL 101 (148)
T ss_pred -------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHh
Confidence 112223445777888888899999888899999999999999887765543
No 441
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.89 E-value=4.5e-11 Score=126.04 Aligned_cols=198 Identities=15% Similarity=0.126 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHH-----HHHHHHHHHH
Q 016798 11 VLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARF-----RRLAHSDLCE 85 (382)
Q Consensus 11 ~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~-----~~~~~~~~~~ 85 (382)
.++++++++++++++......+..++.............+.+.|.+.++.+||..+.+.....+| ..........
T Consensus 5 ~L~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~ 84 (644)
T PRK10733 5 LILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTK 84 (644)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHc
Confidence 34455555445544443333333344444445555677788889999999999998877655555 3322222222
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 86 LLKKRKMKALIPQTV-QLIYFGALFILCGGSLLVSGGSFDGC---SLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 86 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~g~~t~g---~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
..+..........+. .+.....++++++|++++..+.++.| .+++|..+...+..| ..+...+.++.....+.+|
T Consensus 85 ~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~ 163 (644)
T PRK10733 85 NVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEE 163 (644)
T ss_pred CCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHH
Confidence 222111111111111 12223456677899999999999988 777777777777777 6667777888777788888
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++.+...+.. ..+.+..++++| +.|+||+|+||||+++.+++....
T Consensus 164 l~~i~~~~~~~~------------------------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 164 VAELVEYLREPS------------------------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred HHHHHHHhhCHH------------------------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 877765422100 001112245566 999999999999999999987653
No 442
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.88 E-value=1.3e-09 Score=98.63 Aligned_cols=66 Identities=35% Similarity=0.392 Sum_probs=54.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC------------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHH
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (382)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++..++.+++++. +.++.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999985 77888 58998888887777764 3566667777777
Q ss_pred HHH
Q 016798 281 ENI 283 (382)
Q Consensus 281 eNi 283 (382)
+|.
T Consensus 78 ~~~ 80 (205)
T PRK00300 78 GNY 80 (205)
T ss_pred Ccc
Confidence 663
No 443
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.81 E-value=6.1e-09 Score=108.57 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=51.3
Q ss_pred CCCChHHHHHHHHHHHccCC----CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 326 SSLSGGQRQRLAIARALYQN----SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~----~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
..+||||+||++|||+++.. |+++||||||++||+.+...+.+.|+++.+++|||.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~ 498 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLC 498 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 47899999999999999875 699999999999999999999999999988888764
No 444
>PRK10869 recombination and repair protein; Provisional
Probab=98.81 E-value=8.6e-09 Score=106.92 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=50.3
Q ss_pred CCChHHHHHHHHHHHccC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 327 SLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||||+||++|||+++. +|+++||||||++||..+...+.+.|+++.+++|+|.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~ 488 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMC 488 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 479999999999999996 6899999999999999999999999999987777763
No 445
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.76 E-value=6e-09 Score=104.05 Aligned_cols=82 Identities=24% Similarity=0.218 Sum_probs=63.9
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc---eEEEcCEeCCCCCHHHH------hcceEEecCCC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG---CILVDDHDVQNIRLDSL------RRHVGLVSQDI 272 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G---~i~~~g~~~~~~~~~~~------r~~i~~v~Q~~ 272 (382)
..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.+ .|-.+|.++.++..+.+ |..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3589999 99999999999999999999999999999998763 34445555554433333 45699999998
Q ss_pred ccccc-cHHHHHc
Q 016798 273 TLFSG-TVAENIG 284 (382)
Q Consensus 273 ~lf~~-ti~eNi~ 284 (382)
..+.. ++.+|..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 87744 7777764
No 446
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.75 E-value=5.2e-08 Score=83.80 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=68.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~ 296 (382)
+++|.|++|+||||+++.+++...+..|.+.+-+.+... ...+ ++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~~--------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGES--------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhhh---------
Confidence 378999999999999999999987766776654332211 1111 1100000
Q ss_pred HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCC----------HHHHHHH
Q 016798 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD----------SRSELLV 366 (382)
Q Consensus 297 ~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD----------~~~~~~i 366 (382)
....++. ...+.......+.++.++++.+++...+|+++|+||+++-++ ....+.+
T Consensus 51 -------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l 116 (165)
T cd01120 51 -------------LKGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEEL 116 (165)
T ss_pred -------------hcccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHH
Confidence 0000001 011111222334555668889999999999999999995444 4444555
Q ss_pred HHHHHHHhC-CCcee
Q 016798 367 RQAVDRLLG-HHTVR 380 (382)
Q Consensus 367 ~~~l~~~~~-~~TvI 380 (382)
.+......+ +.|+|
T Consensus 117 ~~l~~~~~~~~~~vv 131 (165)
T cd01120 117 RELLERARKGGVTVI 131 (165)
T ss_pred HHHHHHHhcCCceEE
Confidence 555544443 55554
No 447
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.73 E-value=1.2e-08 Score=91.31 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=58.6
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc--ccc-ccHH
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT--LFS-GTVA 280 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~ti~ 280 (382)
..+-+.+.+++|+.++|+||+||||||+++.|+|+++|+.|.|.+.+..-...+ .+..++++.|.+. .+. .|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455667789999999999999999999999999999999999999764432221 2345666666553 233 4777
Q ss_pred HHHc
Q 016798 281 ENIG 284 (382)
Q Consensus 281 eNi~ 284 (382)
+.+.
T Consensus 91 ~~l~ 94 (186)
T cd01130 91 DLLR 94 (186)
T ss_pred HHHH
Confidence 7764
No 448
>PRK01889 GTPase RsgA; Reviewed
Probab=98.72 E-value=1.2e-08 Score=100.51 Aligned_cols=82 Identities=29% Similarity=0.333 Sum_probs=68.2
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHH
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 283 (382)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-.. ...++++.+++|++.+|+.+...|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4666777788999999999999999999999999999999999998754322 2345689999999999988888888
Q ss_pred cCCCC
Q 016798 284 GYRDL 288 (382)
Q Consensus 284 ~~~~~ 288 (382)
.+..+
T Consensus 261 ~l~~~ 265 (356)
T PRK01889 261 QLWDA 265 (356)
T ss_pred cccCc
Confidence 76543
No 449
>PRK13695 putative NTPase; Provisional
Probab=98.68 E-value=3e-08 Score=87.60 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=39.1
Q ss_pred CCCCCChHHHHHHHHHHHccCCCCEEEEeC--cCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 324 RGSSLSGGQRQRLAIARALYQNSSVLILDE--ATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~~~~ililDE--pts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
....+||+++-+..+++..+++|+++++|| |+..+|....+.+.+.+ ..++++|
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i 130 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVI 130 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEE
Confidence 345699999999999999999999999999 55556655444444444 2345554
No 450
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.68 E-value=8.3e-08 Score=87.99 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=34.5
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
..+-+|++|++++|++++|.||||+||||+++.+....
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 36889999999999999999999999999999887653
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.66 E-value=8.9e-08 Score=86.58 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=28.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEe
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHD 252 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~ 252 (382)
.+.|+||+||||||+++.|++.+++. .|.|..-..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 68999999999999999999888754 5676654433
No 452
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.66 E-value=4.5e-08 Score=96.20 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=63.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCc-eEEEcCEeCCCCCHHHHhcceEEecCCCc-----cccccHHHHHc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP--LSG-CILVDDHDVQNIRLDSLRRHVGLVSQDIT-----LFSGTVAENIG 284 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-----lf~~ti~eNi~ 284 (382)
++|..++|+||+||||||+++.|++++.+ ..+ .|.....++ ++..+.++...+++.|... -|...++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 333 565544444 5666666666788888643 47788999887
Q ss_pred CCCCCC-----CCCHHHHHHHHHH
Q 016798 285 YRDLMT-----KIDMERVEHTART 303 (382)
Q Consensus 285 ~~~~~~-----~~~~~~~~~~~~~ 303 (382)
.. |+. --+.+.+..+++.
T Consensus 211 ~~-Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 RK-PHAILVGEARDAETISAALEA 233 (358)
T ss_pred cC-CCEEeeeeeCCHHHHHHHHHH
Confidence 53 321 1245555667776
No 453
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.65 E-value=1.2e-07 Score=84.15 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=46.0
Q ss_pred CcccccCCCCCCCChHHHH------HHHHHHHccCCCCEEEEeCcCCCCC---HHHHHHHHHHHHHHhC-CCcee
Q 016798 316 GYNTHIGPRGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALD---SRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 316 Gldt~vge~G~~lSgGq~Q------rialaRall~~~~ililDEpts~LD---~~~~~~i~~~l~~~~~-~~TvI 380 (382)
|....+......+|+||+| +...+.+.-.+|+++++||||+.+| ......+.+.++.+.+ +.|+|
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi 134 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTL 134 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEE
Confidence 3333344455788999998 4444444567899999999999999 7677777777776653 56655
No 454
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.65 E-value=2.7e-08 Score=91.07 Aligned_cols=50 Identities=26% Similarity=0.376 Sum_probs=42.5
Q ss_pred CCCChHHHHHHHHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 326 SSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
..+|.|++|.+.++-+++..+ .++++|||-++|++...+.+.+.|++..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~ 287 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK 287 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc
Confidence 456999999999998887776 89999999999999999999999988765
No 455
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.61 E-value=5.4e-08 Score=98.54 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=48.5
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcC
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY 285 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~ 285 (382)
++.++.+++|+++++|||||+||||++..|++.+.+..|.. +|+++.+|+ |..+..|++.+
T Consensus 247 ~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 247 DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHH
Confidence 34444566799999999999999999999999887666542 578899988 66677888863
No 456
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.59 E-value=3.7e-08 Score=88.84 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=60.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHH-----HcCCCCCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN-----IGYRDLMTK 291 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN-----i~~~~~~~~ 291 (382)
+++|+|+||||||||++.|.+++ ..|.+.+-+.| .+....+..++ ..+..+. .
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~-~ 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPD-A 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCC-c
Confidence 48999999999999999999998 33444333322 22111111111 1111121 1
Q ss_pred CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
.+.+.+.+.++... .| ..+.-...+.|.|++++-.+ .+.+++++|+|+|+...++
T Consensus 59 ~~~~~~~~~l~~l~---------~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 FDFDLLISHLQDLK---------NG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccHHHHHHHHHHHH---------CC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 22333322222211 11 11222345777787765544 5788999999999999875
No 457
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.58 E-value=8.4e-08 Score=106.68 Aligned_cols=58 Identities=31% Similarity=0.313 Sum_probs=52.4
Q ss_pred CCCCCChHHHHHHHHHHHccC--------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 324 RGSSLSGGQRQRLAIARALYQ--------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~--------~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
....|||||+|+++|||||.. +|+++||||||++||+.+...+++.|+.+. .++||++
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~i 1012 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGV 1012 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 457899999999999999995 899999999999999999999999999986 4677764
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.55 E-value=6.4e-07 Score=82.98 Aligned_cols=54 Identities=17% Similarity=0.080 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHccC--CCCEEEEeCcCCCCC---HHHHHHHHHHHHHHh-CCCcee
Q 016798 327 SLSGGQRQRLAIARALYQ--NSSVLILDEATSALD---SRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 327 ~lSgGq~QrialaRall~--~~~ililDEpts~LD---~~~~~~i~~~l~~~~-~~~TvI 380 (382)
..|.++++.+..++..+. +|+++++||||+.+| .+....+.+.++.+. ++.|++
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvl 159 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTIL 159 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 456788999999999988 899999999996544 444445544455433 355654
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.55 E-value=9.3e-08 Score=85.47 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=47.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT 273 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 273 (382)
.|++++|+||||||||||+++|++.+.| .+.+++..+........+..+++++|+..
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEFF 57 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHHH
Confidence 3889999999999999999999999876 58888888776555566678889988843
No 460
>PRK08149 ATP synthase SpaL; Validated
Probab=98.54 E-value=7.2e-08 Score=96.20 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=59.7
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC---ceEEEcCEeCCCCCHHHHh----cceEEecCCC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---GCILVDDHDVQNIRLDSLR----RHVGLVSQDI 272 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~ 272 (382)
..+++++ +++.+||+++|+|+||+|||||++.|++..+++. |.|-.+|.++.++..+.++ +++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 3589999 9999999999999999999999999999999987 8899999998877655544 5677776544
No 461
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=1.2e-07 Score=105.75 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=50.9
Q ss_pred CCCCCChHHHHHHHHHHHccC----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 324 RGSSLSGGQRQRLAIARALYQ----------NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~----------~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
....|||||++|++||+||.. +|++|||||||++||+++...+.+.|+++.. ++||+
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~ 1014 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIG 1014 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 347899999999999999985 7999999999999999999999999998754 66764
No 462
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.53 E-value=1.1e-07 Score=107.17 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCCCCChHHHHHHHHHHHc----cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 324 RGSSLSGGQRQRLAIARAL----YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRal----l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
....||||||||++|||++ +++|+++||||||++||+.+...+.+.|+.+.++.++|+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~ 1147 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIV 1147 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEE
Confidence 4568999999999999998 578899999999999999999999999998876666653
No 463
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.48 E-value=1.6e-07 Score=83.39 Aligned_cols=65 Identities=23% Similarity=0.377 Sum_probs=46.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-ceEEecCCCccc-cccHHHHHc
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HVGLVSQDITLF-SGTVAENIG 284 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~~~lf-~~ti~eNi~ 284 (382)
+||+++|+|+|||||||+++.|++++.+ +.++|.++.. ...+|+ ..++.+|+...+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999987 6889988743 223332 356666664432 335555554
No 464
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.48 E-value=1e-07 Score=86.71 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=27.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
++|++++|+|+||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 465
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.47 E-value=3.4e-07 Score=82.83 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=65.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~ 296 (382)
+++|+||+|||||||++.+.+.+.+..| +.+-..+........+....++++|++.+.- ..| +.+.. ..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~---g~~~~---~~~ 72 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILGV---ETG---GCPHT---AIR 72 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceehh---hcC---CCccc---eec
Confidence 6899999999999999999999887655 5554456655555555566788898876420 001 11100 001
Q ss_pred HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 297 ~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
...+.....+.++..++|++....|+..|..+|.-.
T Consensus 73 ~~~~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 73 EDASMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred cCHHHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 111122334556666777666667777776666544
No 466
>PRK01156 chromosome segregation protein; Provisional
Probab=98.46 E-value=2.4e-07 Score=101.98 Aligned_cols=50 Identities=32% Similarity=0.458 Sum_probs=44.9
Q ss_pred CCCCCChHHHHHHHH------HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 324 RGSSLSGGQRQRLAI------ARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 324 ~G~~lSgGq~Qrial------aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
....|||||+||+|| ||+++.+|++++|||||++||+.+...+.+.++..
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~ 853 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYS 853 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 467899999999975 59999999999999999999999999998888753
No 467
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.46 E-value=3.6e-07 Score=80.91 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=48.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE-----------cCEeCCCCCHHHHh-----cceEEecCCCccccc
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV-----------DDHDVQNIRLDSLR-----RHVGLVSQDITLFSG 277 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~-----------~g~~~~~~~~~~~r-----~~i~~v~Q~~~lf~~ 277 (382)
|++++|+|||||||||+++.|++.+.+. |.+.+ +|.+...++.+++. +.++.+.|.+.++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999988654 55544 66666666655542 358899999877766
No 468
>PRK03918 chromosome segregation protein; Provisional
Probab=98.44 E-value=2.7e-07 Score=101.28 Aligned_cols=56 Identities=38% Similarity=0.417 Sum_probs=47.7
Q ss_pred CCCCChHHHH------HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 325 GSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 325 G~~lSgGq~Q------rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
...|||||+| |+||||+++.+|+++||||||++||+.+...+.+.|..+.+ +.|+|
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~ii 848 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVI 848 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEE
Confidence 3579999999 56667789999999999999999999999999999988654 34555
No 469
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.43 E-value=1.5e-06 Score=94.46 Aligned_cols=39 Identities=28% Similarity=0.203 Sum_probs=32.4
Q ss_pred ccCCCCEEEEeCcCCCC-CHHHHHHHHHHHHHHhC-CCcee
Q 016798 342 LYQNSSVLILDEATSAL-DSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 342 ll~~~~ililDEpts~L-D~~~~~~i~~~l~~~~~-~~TvI 380 (382)
+..+|+++++|||+++| |+.....+.+.++..++ +.++|
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vi 689 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVV 689 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 36899999999999999 68999999999988765 44443
No 470
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.41 E-value=2.5e-07 Score=92.78 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=70.9
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEE---cCEeCCCCCHHHHh---cceEEe-----cC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILV---DDHDVQNIRLDSLR---RHVGLV-----SQ 270 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~---~g~~~~~~~~~~~r---~~i~~v-----~Q 270 (382)
.+++++ |++.+|++++|+|+||+|||||++.|+|+.++ +.|.|.+ .|.++.++..+.++ .+.+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 368887 99999999999999999999999999999854 4466666 45666665555444 235555 99
Q ss_pred CCc------cccccHHHHHcCCCCCC---CCCHHHHHHHHHHcCh
Q 016798 271 DIT------LFSGTVAENIGYRDLMT---KIDMERVEHTARTANA 306 (382)
Q Consensus 271 ~~~------lf~~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l 306 (382)
+|. ....++.|.++...... .-+..++.++++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 885 22337888876432110 1124566677777776
No 471
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.40 E-value=1.1e-06 Score=92.59 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=68.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCC--------ceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLS--------GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG 284 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~--------G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~ 284 (382)
+..+.+.|+||+|+||||+++++.++..+.. +-|.+||.++. ++...+. |-.
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~-------------------~~l 232 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT-------------------NPL 232 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh-------------------HHh
Confidence 3456799999999999999999999986544 34778876653 2222211 111
Q ss_pred CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHH
Q 016798 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~ 364 (382)
++.. ++...+...+.++..++.+.... .-..+||| +|+||| +..||.....
T Consensus 233 lg~~-~~~~~~~a~~~l~~~gl~~~~~g-----------~v~~asgG----------------vL~LDE-i~~Ld~~~Q~ 283 (615)
T TIGR02903 233 LGSV-HDPIYQGARRDLAETGVPEPKTG-----------LVTDAHGG----------------VLFIDE-IGELDPLLQN 283 (615)
T ss_pred cCCc-cHHHHHHHHHHHHHcCCCchhcC-----------chhhcCCC----------------eEEEec-cccCCHHHHH
Confidence 2211 00001122223333443322211 22466777 999999 7999999999
Q ss_pred HHHHHHHH
Q 016798 365 LVRQAVDR 372 (382)
Q Consensus 365 ~i~~~l~~ 372 (382)
.+.+.+++
T Consensus 284 ~Ll~~Le~ 291 (615)
T TIGR02903 284 KLLKVLED 291 (615)
T ss_pred HHHHHHhh
Confidence 99988875
No 472
>PLN02796 D-glycerate 3-kinase
Probab=98.38 E-value=1.5e-07 Score=91.19 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=51.1
Q ss_pred CccceeeEEe---eCCCE-----EEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCCHHHHhc
Q 016798 203 LVLDQLNLHI---RAGET-----VALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 203 ~~l~~isl~i---~~G~~-----~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~ 263 (382)
.+++++++.+ ++|+. +||+|+||||||||++.|.+++.+. .|.|.+||..+...+...+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 5788999887 67887 9999999999999999999999875 588999998876655555554
No 473
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.38 E-value=4.1e-07 Score=102.52 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=53.9
Q ss_pred CcccccCCCC------CCCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 316 GYNTHIGPRG------SSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 316 Gldt~vge~G------~~lSgGq~QrialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
|++..+...| ..||||||++++||++|+ .+||++||||||++||+.....+.+.|+++.++.++|
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i 1131 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFI 1131 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEE
Confidence 4555554333 479999999999999997 5789999999999999999999999999887665444
No 474
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.36 E-value=3.4e-06 Score=82.77 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=31.7
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEEc
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVD 249 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~~ 249 (382)
.+++..+.|.||+||||||+++.+++.+++ .+|.|..-
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 457899999999999999999999997764 46777654
No 475
>PRK15494 era GTPase Era; Provisional
Probab=98.31 E-value=4.3e-07 Score=88.92 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=50.4
Q ss_pred CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCC-------EEEEECCCCCcHHHHHHHHhhCC
Q 016798 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGE-------TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 183 ~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~-------~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
...+.+++++++|+|+ ..++.++.+++++++|+ .++|+|++|+|||||++.+.|-.
T Consensus 14 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 14 EFKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4567899999999999 45679999999999999 99999999999999999998753
No 476
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.31 E-value=5.2e-07 Score=79.86 Aligned_cols=26 Identities=50% Similarity=0.630 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999874
No 477
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.30 E-value=6.2e-06 Score=72.65 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=39.6
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
...|.||-=---+.|.+- +.-|+|||||-|+|.+.-+..++..|+++.+
T Consensus 128 h~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~ 176 (233)
T COG3910 128 HHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLAD 176 (233)
T ss_pred hhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHh
Confidence 355888876666666654 4569999999999999999999999998864
No 478
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.28 E-value=2.3e-05 Score=85.60 Aligned_cols=43 Identities=33% Similarity=0.296 Sum_probs=36.4
Q ss_pred HHHHccCCCCEEEEeCcCCCC-CHHHHHHHHHHHHHHhC-CCcee
Q 016798 338 IARALYQNSSVLILDEATSAL-DSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 338 laRall~~~~ililDEpts~L-D~~~~~~i~~~l~~~~~-~~TvI 380 (382)
++|++..+|+++++|||++.| |+.....+.+.++..++ +.+++
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vi 724 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVL 724 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 678899999999999999999 78899999999988764 44443
No 479
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.28 E-value=7.7e-07 Score=86.20 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=54.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC------CHHHHhcceEEecCCCccccc-cHHHHHc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------RLDSLRRHVGLVSQDITLFSG-TVAENIG 284 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~------~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~ 284 (382)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|.... .....+..+.+++|.+...+. ++.+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999889999988776432 222235568899886544433 4556543
No 480
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.27 E-value=3e-06 Score=72.74 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=36.9
Q ss_pred ccCCCCCCCChHHHHHHHHHHH-----ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 320 HIGPRGSSLSGGQRQRLAIARA-----LYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRa-----ll~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
.+......++++++++...... ....++++ |+|++|...-.++.+.|.++
T Consensus 115 ~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 115 VVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455566678898887765554 24556766 99999999999998888764
No 481
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=8.9e-07 Score=87.48 Aligned_cols=48 Identities=31% Similarity=0.438 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHHHccC---------CCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 326 SSLSGGQRQRLAIARALYQ---------NSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~---------~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
..+|.||+++++||.+++. +|||++||||+|+||+.....+.+.|.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~ 330 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL 330 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc
Confidence 4689999999999999999 99999999999999999999999999754
No 482
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.25 E-value=9.3e-07 Score=90.26 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=57.0
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
++|++..|+. ..+++++++.+..|+.++++||+|||||||++.|.|+++|.+|++.+++..+.+
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 4588888864 358999999999999999999999999999999999999999999998877644
No 483
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.24 E-value=9e-07 Score=64.18 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=30.9
Q ss_pred cceeeEEeeC-CCEEEEECCCCCcHHHHHHHHhhCCCCCC
Q 016798 205 LDQLNLHIRA-GETVALIGPSGGGKSTLAKLLLRLYDPLS 243 (382)
Q Consensus 205 l~~isl~i~~-G~~~aivG~sGsGKSTl~~ll~g~~~~~~ 243 (382)
+++-.+++.+ |+.+.|.|||||||||++.++.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3456677775 67999999999999999999986665543
No 484
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.24 E-value=1.1e-06 Score=88.06 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=57.4
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
+.++.++++..+..+ ..+++++ +++.+||+++|+|+||+|||||++.|+|+..|+.|.+.+.|..-.+
T Consensus 128 ~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrE 195 (433)
T PRK07594 128 PAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE 195 (433)
T ss_pred CceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchH
Confidence 356777787777544 4689999 9999999999999999999999999999999999988877765433
No 485
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.22 E-value=2.5e-06 Score=79.28 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=29.4
Q ss_pred ccCCCCEEEEeCcCCC------CCHHHHHHHHHHHHHHhC--CCcee
Q 016798 342 LYQNSSVLILDEATSA------LDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 342 ll~~~~ililDEpts~------LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
...+|+++|+| |+++ .|+.....+.+.|+++.+ +.|++
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl 153 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAIL 153 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEE
Confidence 35799999999 7654 688888888888887753 56665
No 486
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.22 E-value=1.2e-06 Score=79.21 Aligned_cols=56 Identities=30% Similarity=0.421 Sum_probs=44.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEeCCCCCHHHHhcceEEecCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 272 (382)
++|++++|+|+|||||||+++.|.+.+.+. .|.+.+||.++.. .+...++|.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 578999999999999999999999977554 4689999977652 2233578888876
No 487
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.21 E-value=7.9e-07 Score=79.41 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=40.0
Q ss_pred ccCCCCCCCChHHHHHHH--HHHHccC-CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 320 HIGPRGSSLSGGQRQRLA--IARALYQ-NSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 320 ~vge~G~~lSgGq~Qria--laRall~-~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
.+......+|+||+|++. +++.+-. +++++ |||++|.+.-..+.+.|.++.+.
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345566678999999977 6666544 34443 99999999999999999887654
No 488
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.21 E-value=1.7e-06 Score=80.03 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=31.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i 246 (382)
++..++||.||||||||||++.|.+++++.+|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 3567999999999999999999999999999983
No 489
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.20 E-value=2.2e-06 Score=67.47 Aligned_cols=57 Identities=28% Similarity=0.345 Sum_probs=39.8
Q ss_pred CcccccCCCCCCCChHHHHH-H------HHHHHccC------CCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 016798 316 GYNTHIGPRGSSLSGGQRQR-L------AIARALYQ------NSSVLILDEATSALDSRSELLVRQAVDR 372 (382)
Q Consensus 316 Gldt~vge~G~~lSgGq~Qr-i------alaRall~------~~~ililDEpts~LD~~~~~~i~~~l~~ 372 (382)
|-+..+-..-..+||||||. + |++..+-. .|++++|||||++||.++...+++.+++
T Consensus 21 g~~~~~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 21 GNEVETSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EECTCEEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CceeeeeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 33333334457899999954 2 33333333 3689999999999999999999988864
No 490
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.20 E-value=1.8e-06 Score=86.34 Aligned_cols=53 Identities=28% Similarity=0.303 Sum_probs=48.3
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
..+++++ +++.+|++++|+|++|+|||||+++|++..+++.|.|...|.+-++
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~e 177 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGRE 177 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHH
Confidence 3589999 9999999999999999999999999999999999999888876544
No 491
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.19 E-value=1.7e-06 Score=83.78 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=45.8
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
..+++++ +.+.+|++++|+|+||+|||||+++|+|+..|+.|.+..-|.+-
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~ 107 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERG 107 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCC
Confidence 4589999 99999999999999999999999999999999988887766443
No 492
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.19 E-value=1.1e-06 Score=74.72 Aligned_cols=74 Identities=35% Similarity=0.435 Sum_probs=49.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-------------CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDP-------------LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~-------------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 283 (382)
.++|+||||||||||++.|++.+++ ..|+ .+|++..-++..++.+ .+.++.++..++...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~---~~~~~~f~e~~~~~~~- 74 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFER---LIENGEFLEWAEFHGN- 74 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHH---HHHcCCeEEEEEEcCE-
Confidence 3789999999999999999999754 3333 3666666666666554 3456666667777777
Q ss_pred cCCCCCCCCCHHHHHHHH
Q 016798 284 GYRDLMTKIDMERVEHTA 301 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ 301 (382)
.+|. ..+.+.++.
T Consensus 75 ~yg~-----~~~~i~~~~ 87 (137)
T cd00071 75 YYGT-----SKAAVEEAL 87 (137)
T ss_pred EecC-----cHHHHHHHH
Confidence 3443 345555444
No 493
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.16 E-value=4e-06 Score=76.23 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=35.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 277 (382)
+++.+++|+|+||||||||++.|.+.++ ...+.+++||.+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~ 47 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQ 47 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCc
Confidence 4688999999999999999999999872 1246778888776643
No 494
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.16 E-value=1.9e-06 Score=88.42 Aligned_cols=61 Identities=28% Similarity=0.365 Sum_probs=50.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHc
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIG 284 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~ 284 (382)
-++||.||||||||||++.|++++ |..|.|.+||.... .+.+.+.+|+|.+|+. ++.+|+.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~-------~~~i~~nfD~P~a~D~d~L~enL~ 127 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS-------SRIIDGNFDDPRLTDYDTLLDNIH 127 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc-------hhhhCccCCChhhcchhHHHHHHH
Confidence 589999999999999999999998 67899999987421 2246788999998865 7888874
No 495
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.12 E-value=2.6e-06 Score=80.89 Aligned_cols=55 Identities=25% Similarity=0.406 Sum_probs=40.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT 273 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 273 (382)
+++|+|+||||||||++.|++++++..|.+...+ ++...+... |...++.+++|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~-r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKG-RKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHH-HHHhhccccccc
Confidence 4799999999999999999999998877655433 555444443 455677777653
No 496
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.12 E-value=4.3e-06 Score=95.21 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=47.9
Q ss_pred CCCCCChHHHHHHH----HHHH--------ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 324 RGSSLSGGQRQRLA----IARA--------LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 324 ~G~~lSgGq~Qria----laRa--------ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
....||||||||++ +|++ +..+|++++|||||+++|+.+...+++.+.++ +.++|+
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~ 1311 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVM 1311 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEE
Confidence 35789999999996 5755 56899999999999999999999999999888 455553
No 497
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.12 E-value=6.5e-06 Score=93.95 Aligned_cols=141 Identities=16% Similarity=0.287 Sum_probs=82.6
Q ss_pred cEEEEeEEEEeCC--CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHH----hhCCCCC-CceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL----LRLYDPL-SGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~--~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll----~g~~~~~-~G~i~~~g~~~~~~~~~ 259 (382)
.+.++++- +|++ .+. .-|.|. ..+++|+|||||||||++.+| .|..+|. .|.+++.+.++... .
T Consensus 5 kl~i~g~r-Sf~~~~~~~---~~I~F~---~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~ 75 (1311)
T TIGR00606 5 KMSILGVR-SFGIEDKDK---QIIDFF---SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--T 75 (1311)
T ss_pred eeeeecee-cCCCccccc---eeeecc---cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--H
Confidence 57788872 4442 111 224443 459999999999999999999 4999995 79988887665432 3
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
..+..|.+++++..-..-++.-.+...... +...+. . +.......++|-...+......++.+..+.+++.
T Consensus 76 ~~~a~V~l~F~~~~g~~~~v~R~~~~~~~~---~~~~~~-~-----~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~ 146 (1311)
T TIGR00606 76 DVRAQIRLQFRDVNGEECAVVRSMVCTQKT---KKTEFK-T-----LEGVITRYKHGEKVSLSSKCAEIDREMISHLGVS 146 (1311)
T ss_pred hhhheeEEEEEcCCCCEEEEEeeeeeeecc---Ccccch-h-----hhhhheecCCCceeeccccHHHHHHHHHHHhCCC
Confidence 556778888865433322222222111100 000110 0 1111222345544445555567888899999888
Q ss_pred HHccCC
Q 016798 340 RALYQN 345 (382)
Q Consensus 340 Rall~~ 345 (382)
.+.+.+
T Consensus 147 ~~~f~~ 152 (1311)
T TIGR00606 147 KAVLNN 152 (1311)
T ss_pred HHHHhh
Confidence 876664
No 498
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.11 E-value=6.5e-05 Score=81.80 Aligned_cols=46 Identities=30% Similarity=0.479 Sum_probs=39.7
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe
Q 016798 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (382)
Q Consensus 207 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~ 252 (382)
.+|+.+.++..++|+|+||||||||++.|++.+....++|.+-+.+
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~ 483 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKD 483 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCC
Confidence 3578888899999999999999999999999888888888776543
No 499
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.07 E-value=4.4e-06 Score=83.90 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=47.4
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~ 254 (382)
..+++++ +++.+|++++|+|+||+|||||++.++|..+++.|.|...|..-.
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ 202 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGR 202 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChH
Confidence 3589999 999999999999999999999999999999999999998885443
No 500
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.06 E-value=3.6e-06 Score=84.16 Aligned_cols=53 Identities=28% Similarity=0.312 Sum_probs=47.2
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~ 256 (382)
.+++ .+|++.+|++++|+|+||+|||||+++|++..+|+.|.|.+.|..-+++
T Consensus 129 ~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev 181 (418)
T TIGR03498 129 RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREV 181 (418)
T ss_pred EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHH
Confidence 3554 6999999999999999999999999999999999999999888865543
Done!