Query 016798
Match_columns 382
No_of_seqs 241 out of 2453
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 03:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 4.9E-75 1.7E-79 650.5 48.5 377 3-381 229-608 (1321)
2 3qf4_A ABC transporter, ATP-bi 100.0 4E-73 1.4E-77 589.8 46.2 377 3-381 156-533 (587)
3 4a82_A Cystic fibrosis transme 100.0 2.6E-73 8.8E-78 590.7 43.6 377 3-381 154-531 (578)
4 2yl4_A ATP-binding cassette SU 100.0 1.1E-71 3.9E-76 580.3 50.1 379 3-381 155-537 (595)
5 3b5x_A Lipid A export ATP-bind 100.0 8.8E-72 3E-76 579.7 48.9 376 3-381 158-534 (582)
6 4f4c_A Multidrug resistance pr 100.0 7.6E-74 2.6E-78 640.9 32.5 379 3-381 889-1271(1321)
7 3b60_A Lipid A export ATP-bind 100.0 9.8E-72 3.4E-76 579.4 45.5 376 3-381 158-534 (582)
8 3qf4_B Uncharacterized ABC tra 100.0 2.8E-72 9.7E-77 584.8 37.4 375 3-381 170-545 (598)
9 3g5u_A MCG1178, multidrug resi 100.0 1.1E-68 3.6E-73 598.1 38.2 377 3-381 201-580 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 5E-65 1.7E-69 568.5 33.5 379 3-381 844-1225(1284)
11 3nh6_A ATP-binding cassette SU 100.0 9.5E-60 3.2E-64 450.7 21.8 231 148-381 14-244 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 4.3E-52 1.5E-56 387.3 24.7 194 186-381 6-199 (247)
13 1mv5_A LMRA, multidrug resista 100.0 2.8E-51 9.7E-56 381.1 16.0 192 188-381 2-193 (243)
14 2ghi_A Transport protein; mult 100.0 3.1E-50 1.1E-54 377.5 23.2 193 186-381 16-209 (260)
15 2ixe_A Antigen peptide transpo 100.0 7E-50 2.4E-54 377.3 23.0 194 186-381 15-212 (271)
16 3gd7_A Fusion complex of cysti 100.0 7.7E-49 2.6E-53 386.5 20.8 193 185-381 17-209 (390)
17 2pze_A Cystic fibrosis transme 100.0 1.6E-47 5.5E-52 352.6 20.4 180 186-381 5-185 (229)
18 2cbz_A Multidrug resistance-as 100.0 3.2E-47 1.1E-51 352.4 17.9 179 187-381 3-184 (237)
19 3tif_A Uncharacterized ABC tra 100.0 4.7E-47 1.6E-51 350.8 15.3 184 188-381 2-201 (235)
20 3gfo_A Cobalt import ATP-bindi 100.0 1.4E-46 4.9E-51 354.9 15.9 183 187-381 7-199 (275)
21 3tui_C Methionine import ATP-b 100.0 3.6E-46 1.2E-50 363.2 18.3 185 186-381 23-219 (366)
22 1ji0_A ABC transporter; ATP bi 100.0 1.4E-45 4.7E-50 342.1 19.6 186 187-381 6-194 (240)
23 2pcj_A ABC transporter, lipopr 100.0 1.2E-45 4.2E-50 339.0 16.9 182 187-381 4-195 (224)
24 2olj_A Amino acid ABC transpor 100.0 1.6E-45 5.4E-50 345.7 17.3 182 187-381 24-214 (263)
25 1vpl_A ABC transporter, ATP-bi 100.0 2.4E-45 8.2E-50 343.3 17.5 182 186-381 14-201 (256)
26 1g6h_A High-affinity branched- 100.0 4.3E-45 1.5E-49 342.1 18.3 182 187-381 7-208 (257)
27 4g1u_C Hemin import ATP-bindin 100.0 3.6E-45 1.2E-49 344.0 16.8 182 187-381 11-203 (266)
28 2yz2_A Putative ABC transporte 100.0 9.3E-45 3.2E-49 341.5 19.5 180 188-381 3-193 (266)
29 1b0u_A Histidine permease; ABC 100.0 6.7E-45 2.3E-49 341.6 17.7 182 187-381 6-208 (262)
30 1sgw_A Putative ABC transporte 100.0 5.9E-45 2E-49 331.8 16.2 176 186-381 9-188 (214)
31 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-44 4.9E-49 351.7 18.3 182 187-381 4-194 (359)
32 2ihy_A ABC transporter, ATP-bi 100.0 8.2E-45 2.8E-49 343.8 15.6 180 187-379 21-214 (279)
33 3rlf_A Maltose/maltodextrin im 100.0 1.4E-44 4.9E-49 354.0 16.5 180 187-381 3-189 (381)
34 1z47_A CYSA, putative ABC-tran 100.0 2.5E-44 8.6E-49 350.0 17.2 182 186-381 13-201 (355)
35 2bbs_A Cystic fibrosis transme 100.0 2.4E-44 8.3E-49 342.1 16.8 176 185-381 38-214 (290)
36 2yyz_A Sugar ABC transporter, 100.0 3.5E-44 1.2E-48 349.7 18.2 180 187-381 3-189 (359)
37 2onk_A Molybdate/tungstate ABC 100.0 2.2E-44 7.6E-49 333.7 15.1 176 188-381 2-182 (240)
38 1v43_A Sugar-binding transport 100.0 9E-44 3.1E-48 348.4 18.8 180 187-381 11-197 (372)
39 1oxx_K GLCV, glucose, ABC tran 100.0 3.1E-44 1.1E-48 350.0 15.3 182 187-381 3-196 (353)
40 2qi9_C Vitamin B12 import ATP- 100.0 8E-44 2.7E-48 331.7 17.4 176 187-381 4-188 (249)
41 2it1_A 362AA long hypothetical 100.0 4.4E-44 1.5E-48 349.4 16.0 180 187-381 3-189 (362)
42 3d31_A Sulfate/molybdate ABC t 100.0 3.7E-44 1.3E-48 348.4 15.0 178 188-381 2-183 (348)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 3.4E-44 1.2E-48 334.7 13.3 181 188-381 4-198 (250)
44 1g29_1 MALK, maltose transport 100.0 1.4E-43 4.9E-48 347.4 15.5 180 187-381 3-195 (372)
45 2nq2_C Hypothetical ABC transp 100.0 4.5E-43 1.5E-47 327.5 15.4 170 187-381 4-184 (253)
46 2pjz_A Hypothetical protein ST 100.0 3.7E-43 1.3E-47 329.6 12.5 176 188-381 2-180 (263)
47 2zu0_C Probable ATP-dependent 100.0 6.2E-43 2.1E-47 329.1 12.9 186 187-381 20-219 (267)
48 3ozx_A RNAse L inhibitor; ATP 100.0 4.7E-34 1.6E-38 292.6 13.5 169 187-381 269-441 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 3.2E-34 1.1E-38 297.6 11.9 167 187-381 357-527 (607)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 2.4E-34 8.1E-39 295.3 10.6 167 187-381 287-457 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 2.7E-34 9.4E-39 298.1 7.3 177 187-381 83-283 (607)
52 2iw3_A Elongation factor 3A; a 100.0 1.7E-33 5.7E-38 302.4 13.4 173 187-381 671-953 (986)
53 2v9p_A Replication protein E1; 100.0 7.3E-37 2.5E-41 291.7 -12.3 196 119-367 36-233 (305)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 6.2E-34 2.1E-38 292.2 6.9 173 191-381 25-213 (538)
55 3j16_B RLI1P; ribosome recycli 100.0 4.9E-32 1.7E-36 280.9 12.6 166 191-381 350-523 (608)
56 2iw3_A Elongation factor 3A; a 100.0 3.9E-30 1.3E-34 276.3 22.8 164 186-381 434-600 (986)
57 3ozx_A RNAse L inhibitor; ATP 100.0 3.8E-32 1.3E-36 278.6 5.0 171 192-381 4-192 (538)
58 3j16_B RLI1P; ribosome recycli 100.0 3.3E-31 1.1E-35 274.7 8.7 174 192-381 82-276 (608)
59 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-30 5.7E-35 273.9 10.8 171 202-381 31-259 (670)
60 3ux8_A Excinuclease ABC, A sub 100.0 3.6E-29 1.2E-33 263.6 8.2 174 194-381 327-601 (670)
61 4aby_A DNA repair protein RECN 99.9 2.9E-28 9.9E-33 242.4 12.0 178 203-381 49-351 (415)
62 2npi_A Protein CLP1; CLP1-PCF1 99.9 7.5E-32 2.6E-36 271.3 -15.5 160 187-380 118-292 (460)
63 3b85_A Phosphate starvation-in 99.9 2.1E-29 7.2E-34 228.2 -5.5 139 203-380 14-153 (208)
64 3pih_A Uvrabc system protein A 99.9 1.1E-26 3.7E-31 249.3 12.9 167 203-381 598-863 (916)
65 2vf7_A UVRA2, excinuclease ABC 99.9 7.7E-26 2.6E-30 240.9 14.2 181 186-381 501-788 (842)
66 1z6g_A Guanylate kinase; struc 99.9 6.3E-29 2.1E-33 226.7 -8.8 155 203-376 11-176 (218)
67 1e69_A Chromosome segregation 99.9 1.1E-25 3.9E-30 216.9 12.9 175 206-381 16-277 (322)
68 2r6f_A Excinuclease ABC subuni 99.9 1.5E-25 5.2E-30 239.3 13.5 175 187-381 629-903 (972)
69 2ygr_A Uvrabc system protein A 99.9 4.6E-25 1.6E-29 236.4 13.3 176 186-381 646-921 (993)
70 1tq4_A IIGP1, interferon-induc 99.9 3.1E-27 1.1E-31 234.0 -7.8 145 203-374 37-213 (413)
71 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.6E-27 5.5E-32 230.5 -11.9 183 122-380 75-269 (330)
72 3aez_A Pantothenate kinase; tr 99.9 1.9E-27 6.4E-32 228.3 -12.3 142 184-359 40-208 (312)
73 1ye8_A Protein THEP1, hypothet 99.9 2.6E-25 8.9E-30 196.5 2.3 126 217-380 2-134 (178)
74 4gp7_A Metallophosphoesterase; 99.9 1.3E-24 4.3E-29 190.7 6.5 135 207-381 1-154 (171)
75 3sop_A Neuronal-specific septi 99.9 1.4E-25 4.9E-30 211.0 -3.3 139 217-380 4-144 (270)
76 2f1r_A Molybdopterin-guanine d 99.9 9.7E-26 3.3E-30 197.9 -6.9 136 216-374 3-160 (171)
77 3b9q_A Chloroplast SRP recepto 99.9 4E-24 1.4E-28 204.2 -4.9 138 206-363 91-238 (302)
78 2eyu_A Twitching motility prot 99.8 2.9E-24 9.8E-29 201.1 -9.4 170 203-380 15-234 (261)
79 2og2_A Putative signal recogni 99.8 2.9E-23 9.9E-28 202.2 -4.4 138 206-363 148-295 (359)
80 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 7.4E-21 2.5E-25 186.3 12.6 59 323-381 275-340 (365)
81 2ewv_A Twitching motility prot 99.8 8.3E-24 2.8E-28 207.7 -10.1 170 203-381 126-346 (372)
82 1lw7_A Transcriptional regulat 99.8 3.9E-23 1.3E-27 202.5 -5.4 148 204-355 157-329 (365)
83 2gza_A Type IV secretion syste 99.8 5E-25 1.7E-29 215.6 -20.4 223 111-341 52-301 (361)
84 2dpy_A FLII, flagellum-specifi 99.8 8.6E-23 2.9E-27 204.2 -5.9 156 186-375 130-296 (438)
85 1znw_A Guanylate kinase, GMP k 99.8 3.7E-22 1.3E-26 180.0 -4.0 152 202-381 9-183 (207)
86 1pui_A ENGB, probable GTP-bind 99.8 7.5E-22 2.6E-26 177.1 -4.4 169 188-375 4-198 (210)
87 2jeo_A Uridine-cytidine kinase 99.8 2.1E-21 7.1E-26 179.7 -1.8 132 201-360 11-148 (245)
88 2i3b_A HCR-ntpase, human cance 99.8 5.4E-21 1.9E-25 170.3 -0.1 127 215-371 1-133 (189)
89 3asz_A Uridine kinase; cytidin 99.8 8.9E-22 3E-26 177.5 -7.3 135 212-380 3-155 (211)
90 1lvg_A Guanylate kinase, GMP k 99.8 2.7E-22 9.1E-27 180.0 -11.1 138 213-374 2-153 (198)
91 2o5v_A DNA replication and rep 99.7 4.3E-18 1.5E-22 165.9 12.1 52 327-380 265-325 (359)
92 1odf_A YGR205W, hypothetical 3 99.7 8.3E-21 2.8E-25 180.2 -7.0 132 213-362 29-169 (290)
93 1ewq_A DNA mismatch repair pro 99.7 1E-18 3.4E-23 185.2 7.8 135 185-381 548-693 (765)
94 2qnr_A Septin-2, protein NEDD5 99.7 8.9E-20 3.1E-24 174.1 -1.0 150 191-375 2-154 (301)
95 2o8b_B DNA mismatch repair pro 99.7 4E-18 1.4E-22 185.7 11.3 143 186-381 749-907 (1022)
96 2obl_A ESCN; ATPase, hydrolase 99.7 9.8E-19 3.4E-23 169.8 4.3 157 186-374 44-208 (347)
97 3szr_A Interferon-induced GTP- 99.7 5.5E-20 1.9E-24 191.3 -5.4 157 187-380 10-188 (608)
98 2qag_C Septin-7; cell cycle, c 99.7 3.4E-19 1.2E-23 176.9 0.1 157 186-380 10-171 (418)
99 1tf7_A KAIC; homohexamer, hexa 99.7 4.5E-20 1.6E-24 189.0 -6.8 152 196-381 20-180 (525)
100 1cr0_A DNA primase/helicase; R 99.7 1.7E-18 5.7E-23 164.4 4.3 159 203-381 23-192 (296)
101 1pzn_A RAD51, DNA repair and r 99.7 1.4E-18 4.9E-23 169.0 1.8 134 204-381 119-281 (349)
102 2qag_B Septin-6, protein NEDD5 99.7 4.6E-18 1.6E-22 168.4 4.6 169 187-374 16-206 (427)
103 1rj9_A FTSY, signal recognitio 99.7 4.2E-18 1.4E-22 162.6 3.8 126 214-359 101-235 (304)
104 4ad8_A DNA repair protein RECN 99.7 1.5E-17 5.1E-22 170.1 7.5 56 326-381 395-453 (517)
105 3c8u_A Fructokinase; YP_612366 99.7 3.7E-20 1.3E-24 167.0 -10.9 134 212-374 19-170 (208)
106 3qkt_A DNA double-strand break 99.7 2.4E-16 8.3E-21 152.6 13.6 57 325-381 246-309 (339)
107 1tf7_A KAIC; homohexamer, hexa 99.7 7.8E-17 2.7E-21 165.0 9.0 131 209-381 275-412 (525)
108 3jvv_A Twitching mobility prot 99.6 1.5E-16 5E-21 155.0 8.2 126 191-380 92-225 (356)
109 4a74_A DNA repair and recombin 99.6 2.2E-17 7.6E-22 149.8 2.1 132 211-381 21-175 (231)
110 1w1w_A Structural maintenance 99.6 4.3E-16 1.5E-20 155.6 11.0 54 327-380 333-391 (430)
111 3thx_B DNA mismatch repair pro 99.6 1.3E-16 4.4E-21 171.7 7.2 145 186-381 639-791 (918)
112 2ehv_A Hypothetical protein PH 99.6 3.8E-18 1.3E-22 156.9 -4.6 162 188-381 7-177 (251)
113 3thx_A DNA mismatch repair pro 99.6 2.7E-15 9.1E-20 161.8 15.6 135 186-381 630-780 (934)
114 1zp6_A Hypothetical protein AT 99.6 1.1E-17 3.8E-22 147.9 -3.4 139 211-373 5-147 (191)
115 2qm8_A GTPase/ATPase; G protei 99.6 8.8E-19 3E-23 169.7 -11.7 179 190-374 32-259 (337)
116 1nij_A Hypothetical protein YJ 99.6 1.6E-17 5.4E-22 159.6 -3.4 137 216-381 5-184 (318)
117 1s96_A Guanylate kinase, GMP k 99.6 1.8E-16 6.2E-21 144.3 1.7 118 210-381 11-135 (219)
118 1nlf_A Regulatory protein REPA 99.6 1.2E-15 4.1E-20 143.5 6.8 143 211-381 26-176 (279)
119 2bbw_A Adenylate kinase 4, AK4 99.6 9.3E-17 3.2E-21 148.3 -2.4 150 214-374 26-197 (246)
120 1htw_A HI0065; nucleotide-bind 99.6 1.2E-16 4.1E-21 138.1 -1.9 86 191-284 11-96 (158)
121 1p9r_A General secretion pathw 99.6 4.9E-18 1.7E-22 168.7 -13.0 130 204-350 158-314 (418)
122 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 5.5E-15 1.9E-19 126.2 6.2 66 316-381 41-118 (148)
123 1wb9_A DNA mismatch repair pro 99.5 1.1E-14 3.6E-19 155.3 7.5 140 186-381 576-725 (800)
124 2rcn_A Probable GTPase ENGC; Y 99.5 1.6E-15 5.5E-20 147.2 0.6 123 203-343 204-329 (358)
125 2w0m_A SSO2452; RECA, SSPF, un 99.5 4.4E-15 1.5E-19 134.5 2.5 143 203-380 10-162 (235)
126 3pih_A Uvrabc system protein A 99.5 3.6E-15 1.2E-19 160.2 1.1 134 231-381 384-521 (916)
127 2yhs_A FTSY, cell division pro 99.5 1.7E-14 5.7E-19 144.8 5.2 82 205-286 283-371 (503)
128 2vf7_A UVRA2, excinuclease ABC 99.5 6.2E-15 2.1E-19 157.2 1.8 146 223-381 270-436 (842)
129 2yv5_A YJEQ protein; hydrolase 99.4 8.6E-15 2.9E-19 139.6 0.6 117 210-340 160-300 (302)
130 2x8a_A Nuclear valosin-contain 99.4 2.2E-16 7.4E-21 148.6 -11.1 143 203-370 34-190 (274)
131 3kta_B Chromosome segregation 99.4 1.3E-13 4.5E-18 120.6 7.3 56 325-380 62-121 (173)
132 2cvh_A DNA repair and recombin 99.4 1.6E-13 5.4E-18 123.4 7.8 130 203-380 7-150 (220)
133 1sq5_A Pantothenate kinase; P- 99.4 1.3E-15 4.4E-20 145.6 -6.9 90 186-284 36-150 (308)
134 3e70_C DPA, signal recognition 99.4 1.4E-13 4.9E-18 132.4 6.1 123 211-356 125-254 (328)
135 1sxj_E Activator 1 40 kDa subu 99.4 3.4E-13 1.1E-17 130.4 7.1 130 216-380 37-168 (354)
136 1n0w_A DNA repair protein RAD5 99.4 4.8E-13 1.7E-17 122.1 6.8 108 211-361 20-135 (243)
137 2r6f_A Excinuclease ABC subuni 99.4 1.2E-13 4E-18 148.0 1.9 66 316-381 492-561 (972)
138 1u0l_A Probable GTPase ENGC; p 99.4 1.8E-13 6.1E-18 130.3 2.9 104 210-314 164-289 (301)
139 2oap_1 GSPE-2, type II secreti 99.3 2.4E-15 8.1E-20 153.1 -11.1 163 203-380 248-442 (511)
140 2kjq_A DNAA-related protein; s 99.3 9.2E-13 3.1E-17 112.5 5.9 41 204-250 30-72 (149)
141 2ygr_A Uvrabc system protein A 99.3 4.7E-12 1.6E-16 136.1 11.7 102 274-381 466-578 (993)
142 3ec2_A DNA replication protein 99.3 1.9E-12 6.6E-17 113.2 6.7 36 209-244 32-67 (180)
143 3tr0_A Guanylate kinase, GMP k 99.3 1.8E-12 6.1E-17 115.4 6.0 156 209-373 1-187 (205)
144 1cke_A CK, MSSA, protein (cyti 99.3 5.4E-14 1.8E-18 127.5 -5.5 129 214-356 4-151 (227)
145 1udx_A The GTP-binding protein 99.3 4E-13 1.4E-17 133.1 -0.2 151 205-380 147-302 (416)
146 1ls1_A Signal recognition part 99.3 2.9E-12 9.8E-17 121.6 5.4 137 188-378 77-214 (295)
147 3euj_A Chromosome partition pr 99.3 2.6E-12 8.9E-17 129.2 5.2 64 189-257 8-71 (483)
148 1vma_A Cell division protein F 99.2 2.2E-12 7.4E-17 123.0 3.7 98 208-356 97-197 (306)
149 1t9h_A YLOQ, probable GTPase E 99.2 9.1E-13 3.1E-17 125.5 -1.6 97 210-308 168-287 (307)
150 3lnc_A Guanylate kinase, GMP k 99.2 2.1E-13 7E-18 124.5 -6.2 39 203-241 15-54 (231)
151 3lda_A DNA repair protein RAD5 99.2 1.2E-11 4.2E-16 122.0 5.9 126 211-381 174-323 (400)
152 3a00_A Guanylate kinase, GMP k 99.2 7.3E-12 2.5E-16 110.4 2.8 127 215-353 1-169 (186)
153 4e22_A Cytidylate kinase; P-lo 99.1 3.5E-12 1.2E-16 118.2 -1.2 72 213-284 25-114 (252)
154 2bdt_A BH3686; alpha-beta prot 99.1 5.3E-13 1.8E-17 117.7 -6.5 135 215-380 2-150 (189)
155 1in4_A RUVB, holliday junction 99.1 3.9E-14 1.3E-18 136.7 -15.2 91 191-284 22-123 (334)
156 1oix_A RAS-related protein RAB 99.1 7.9E-12 2.7E-16 110.4 0.6 143 217-373 31-189 (191)
157 1iy2_A ATP-dependent metallopr 99.1 1.4E-13 4.8E-18 129.2 -12.1 139 189-355 51-195 (278)
158 1qhl_A Protein (cell division 99.1 2.4E-12 8.4E-17 117.4 -3.7 75 187-271 9-91 (227)
159 1ixz_A ATP-dependent metallopr 99.1 2.4E-13 8.3E-18 125.6 -12.5 141 188-356 26-172 (254)
160 3auy_A DNA double-strand break 99.0 2.6E-10 8.9E-15 111.5 6.8 55 326-380 279-340 (371)
161 3k1j_A LON protease, ATP-depen 99.0 2.4E-11 8.3E-16 126.2 -1.2 157 202-372 47-227 (604)
162 3ney_A 55 kDa erythrocyte memb 99.0 8.3E-11 2.8E-15 104.8 2.1 84 209-303 13-109 (197)
163 1kgd_A CASK, peripheral plasma 99.0 9E-11 3.1E-15 102.9 0.7 80 214-302 4-94 (180)
164 1svm_A Large T antigen; AAA+ f 98.9 1.1E-11 3.8E-16 121.3 -6.9 139 203-356 157-312 (377)
165 2px0_A Flagellar biosynthesis 98.9 2E-09 6.9E-14 102.0 8.6 102 213-369 103-204 (296)
166 2f9l_A RAB11B, member RAS onco 98.8 1.1E-09 3.6E-14 97.0 2.8 138 217-373 7-165 (199)
167 2qt1_A Nicotinamide riboside k 98.8 8.8E-10 3E-14 98.4 1.0 53 208-286 14-66 (207)
168 2ius_A DNA translocase FTSK; n 98.8 2.8E-10 9.5E-15 115.2 -3.6 147 207-373 159-324 (512)
169 4eun_A Thermoresistant glucoki 98.8 1.4E-09 4.8E-14 96.7 1.1 72 208-284 22-94 (200)
170 3nwj_A ATSK2; P loop, shikimat 98.8 7.7E-10 2.6E-14 102.3 -0.6 52 187-239 17-72 (250)
171 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.4E-10 4.8E-15 113.9 -6.6 134 211-373 16-169 (392)
172 2j41_A Guanylate kinase; GMP, 98.7 4.5E-09 1.6E-13 93.2 3.3 63 210-275 1-63 (207)
173 2dy1_A Elongation factor G; tr 98.7 5E-09 1.7E-13 109.9 3.5 96 209-306 3-100 (665)
174 3cr8_A Sulfate adenylyltranfer 98.7 2.1E-09 7.2E-14 110.1 -0.1 91 210-305 364-468 (552)
175 1zu4_A FTSY; GTPase, signal re 98.7 5.7E-09 2E-13 99.9 2.8 80 205-284 95-185 (320)
176 3uie_A Adenylyl-sulfate kinase 98.7 6.5E-10 2.2E-14 98.9 -3.8 61 191-254 3-65 (200)
177 2zr9_A Protein RECA, recombina 98.7 3.9E-08 1.3E-12 95.2 8.0 37 211-247 57-93 (349)
178 2qtf_A Protein HFLX, GTP-bindi 98.6 9.7E-09 3.3E-13 100.1 2.8 144 217-374 181-352 (364)
179 2dhr_A FTSH; AAA+ protein, hex 98.6 1.2E-09 4.1E-14 110.6 -4.6 140 189-356 42-187 (499)
180 3tau_A Guanylate kinase, GMP k 98.6 9.1E-09 3.1E-13 92.1 1.4 67 213-282 6-83 (208)
181 3kta_A Chromosome segregation 98.6 1.3E-08 4.4E-13 88.7 1.7 67 206-273 18-90 (182)
182 3vaa_A Shikimate kinase, SK; s 98.5 2.7E-08 9.1E-13 88.3 3.1 44 196-239 5-49 (199)
183 2dr3_A UPF0273 protein PH0284; 98.5 3.1E-08 1E-12 90.1 2.9 48 203-250 10-59 (247)
184 2vp4_A Deoxynucleoside kinase; 98.5 4.2E-09 1.4E-13 95.9 -4.4 65 208-276 13-87 (230)
185 2r6a_A DNAB helicase, replicat 98.4 1.9E-07 6.4E-12 93.6 5.3 154 203-380 191-358 (454)
186 3t34_A Dynamin-related protein 98.4 3.4E-07 1.2E-11 88.8 6.7 46 203-251 25-72 (360)
187 1knq_A Gluconate kinase; ALFA/ 98.3 8.7E-08 3E-12 82.8 1.0 56 213-274 6-62 (175)
188 1rz3_A Hypothetical protein rb 98.3 1.6E-07 5.5E-12 83.4 1.9 47 211-257 18-64 (201)
189 3ice_A Transcription terminati 98.3 9.6E-08 3.3E-12 92.8 0.4 54 185-239 131-198 (422)
190 2ffh_A Protein (FFH); SRP54, s 98.3 4.6E-07 1.6E-11 89.7 5.2 144 190-361 79-227 (425)
191 2ce7_A Cell division protein F 98.3 1.1E-06 3.7E-11 88.4 7.1 35 203-239 39-73 (476)
192 2xau_A PRE-mRNA-splicing facto 98.2 1.3E-06 4.3E-11 93.2 6.7 51 326-376 189-240 (773)
193 3kl4_A SRP54, signal recogniti 98.2 1.8E-06 6E-11 85.7 6.2 40 214-253 96-135 (433)
194 2e87_A Hypothetical protein PH 98.1 2.7E-06 9.4E-11 82.3 7.2 54 326-380 230-284 (357)
195 3tqc_A Pantothenate kinase; bi 98.1 3.8E-07 1.3E-11 87.1 1.0 125 203-360 74-211 (321)
196 4a1f_A DNAB helicase, replicat 98.1 9.2E-06 3.1E-10 78.1 8.8 103 204-359 35-141 (338)
197 3m6a_A ATP-dependent protease 98.0 1.3E-06 4.6E-11 89.4 0.9 79 191-272 87-165 (543)
198 2pez_A Bifunctional 3'-phospho 97.9 2E-06 6.7E-11 74.6 1.0 41 213-254 3-45 (179)
199 2p67_A LAO/AO transport system 97.9 1.4E-06 4.7E-11 84.0 -0.0 52 203-254 44-95 (341)
200 1mky_A Probable GTP-binding pr 97.9 6.3E-06 2.2E-10 82.1 4.6 68 216-283 181-261 (439)
201 1kag_A SKI, shikimate kinase I 97.9 5.5E-06 1.9E-10 71.0 3.4 33 214-250 3-35 (173)
202 4eaq_A DTMP kinase, thymidylat 97.9 4.6E-06 1.6E-10 75.7 2.4 45 204-249 12-59 (229)
203 3r20_A Cytidylate kinase; stru 97.9 3.3E-06 1.1E-10 76.9 1.5 70 214-283 8-95 (233)
204 1m7g_A Adenylylsulfate kinase; 97.8 2.7E-06 9.2E-11 75.9 -0.3 44 210-253 20-65 (211)
205 2www_A Methylmalonic aciduria 97.8 6.3E-06 2.1E-10 79.7 2.0 43 213-255 72-114 (349)
206 3llm_A ATP-dependent RNA helic 97.8 2.7E-05 9.2E-10 70.5 6.1 131 212-376 73-208 (235)
207 2z43_A DNA repair and recombin 97.8 1E-05 3.6E-10 77.2 3.5 29 211-239 103-131 (324)
208 1f6b_A SAR1; gtpases, N-termin 97.8 5.3E-06 1.8E-10 73.0 1.3 58 194-253 6-71 (198)
209 3bh0_A DNAB-like replicative h 97.8 8E-05 2.7E-09 70.7 9.2 104 203-357 56-163 (315)
210 2qor_A Guanylate kinase; phosp 97.7 5.1E-06 1.7E-10 73.7 0.8 29 212-240 9-37 (204)
211 1fnn_A CDC6P, cell division co 97.7 0.0001 3.4E-09 71.1 9.6 29 214-242 41-71 (389)
212 3hr8_A Protein RECA; alpha and 97.7 1.3E-05 4.4E-10 77.6 3.2 61 211-274 57-118 (356)
213 1ega_A Protein (GTP-binding pr 97.7 1.1E-05 3.9E-10 76.1 2.5 26 214-239 7-32 (301)
214 3b9p_A CG5977-PA, isoform A; A 97.6 0.00022 7.4E-09 66.5 10.4 27 213-239 52-78 (297)
215 1m2o_B GTP-binding protein SAR 97.6 3.6E-05 1.2E-09 67.1 4.3 49 204-253 13-69 (190)
216 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.8E-05 1.3E-09 64.8 4.0 30 206-236 15-44 (149)
217 2gj8_A MNME, tRNA modification 97.6 4E-05 1.4E-09 65.7 4.1 27 213-239 2-28 (172)
218 1j8m_F SRP54, signal recogniti 97.6 1E-05 3.6E-10 76.3 0.2 47 208-255 92-138 (297)
219 1sxj_C Activator 1 40 kDa subu 97.6 3.7E-06 1.3E-10 80.6 -3.3 67 203-269 32-101 (340)
220 1y63_A LMAJ004144AAA protein; 97.5 4.9E-05 1.7E-09 66.1 3.4 32 207-238 2-33 (184)
221 2yvu_A Probable adenylyl-sulfa 97.5 3.3E-05 1.1E-09 67.2 1.9 40 211-250 9-49 (186)
222 1jjv_A Dephospho-COA kinase; P 97.4 7.8E-05 2.7E-09 65.7 3.7 29 217-250 4-32 (206)
223 2z4s_A Chromosomal replication 97.4 0.0002 6.7E-09 71.3 6.9 25 215-239 130-154 (440)
224 3lxx_A GTPase IMAP family memb 97.4 0.00035 1.2E-08 63.1 7.8 29 217-245 31-59 (239)
225 3t61_A Gluconokinase; PSI-biol 97.4 5.5E-05 1.9E-09 66.6 2.1 35 215-253 18-52 (202)
226 2jaq_A Deoxyguanosine kinase; 97.3 9.9E-06 3.4E-10 71.0 -3.0 23 217-239 2-24 (205)
227 1l8q_A Chromosomal replication 97.3 0.00019 6.6E-09 67.9 5.8 28 214-241 36-63 (324)
228 2qag_A Septin-2, protein NEDD5 97.3 1.5E-05 5.1E-10 77.4 -2.1 58 185-250 15-72 (361)
229 2p5t_B PEZT; postsegregational 97.3 5.6E-05 1.9E-09 69.3 1.5 41 211-253 28-68 (253)
230 1ypw_A Transitional endoplasmi 97.3 2.4E-05 8.1E-10 83.8 -1.6 61 210-272 233-293 (806)
231 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00012 4.2E-09 71.6 3.6 41 211-251 18-69 (396)
232 2wji_A Ferrous iron transport 97.2 0.00026 8.9E-09 59.9 4.9 23 217-239 5-27 (165)
233 2qby_A CDC6 homolog 1, cell di 97.2 0.00012 4.2E-09 70.2 3.1 30 213-242 43-72 (386)
234 1np6_A Molybdopterin-guanine d 97.2 0.00013 4.3E-09 63.4 2.8 38 215-252 6-46 (174)
235 2if2_A Dephospho-COA kinase; a 97.2 0.00019 6.3E-09 63.1 3.8 21 217-237 3-23 (204)
236 2wjg_A FEOB, ferrous iron tran 97.2 0.00018 6E-09 61.9 3.5 22 217-238 9-30 (188)
237 3qks_A DNA double-strand break 97.2 0.00022 7.6E-09 63.2 4.0 30 206-236 15-44 (203)
238 1lv7_A FTSH; alpha/beta domain 97.2 0.00019 6.5E-09 65.6 3.6 48 204-255 36-83 (257)
239 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00018 6.3E-09 70.2 3.6 57 192-249 10-69 (392)
240 2zej_A Dardarin, leucine-rich 97.1 0.00021 7.2E-09 61.6 3.3 25 217-241 4-28 (184)
241 2q6t_A DNAB replication FORK h 97.1 0.0021 7E-08 63.9 10.7 37 204-240 189-225 (444)
242 2ga8_A Hypothetical 39.9 kDa p 97.1 8E-05 2.7E-09 71.7 -0.2 37 203-239 10-48 (359)
243 1qhx_A CPT, protein (chloramph 97.1 0.00034 1.2E-08 59.9 3.8 27 214-240 2-28 (178)
244 3cm0_A Adenylate kinase; ATP-b 97.0 0.00027 9.1E-09 61.0 2.9 27 213-239 2-28 (186)
245 1sxj_D Activator 1 41 kDa subu 97.0 0.00012 4.1E-09 69.7 0.4 37 204-240 45-83 (353)
246 2eyu_A Twitching motility prot 97.0 0.00055 1.9E-08 63.2 4.8 40 335-380 88-127 (261)
247 1uf9_A TT1252 protein; P-loop, 97.0 0.00037 1.3E-08 60.8 3.4 31 215-250 8-38 (203)
248 1gtv_A TMK, thymidylate kinase 96.9 0.00013 4.4E-09 64.4 -0.1 26 217-242 2-27 (214)
249 3kb2_A SPBC2 prophage-derived 96.9 0.00047 1.6E-08 58.4 3.4 23 217-239 3-25 (173)
250 3ihw_A Centg3; RAS, centaurin, 96.9 0.00095 3.3E-08 57.6 5.3 36 217-252 22-66 (184)
251 1q3t_A Cytidylate kinase; nucl 96.9 0.00055 1.9E-08 61.8 3.7 26 213-238 14-39 (236)
252 1kht_A Adenylate kinase; phosp 96.9 0.00061 2.1E-08 58.7 3.6 26 214-239 2-27 (192)
253 3h4m_A Proteasome-activating n 96.8 0.0018 6.1E-08 59.8 6.9 28 212-239 48-75 (285)
254 3uk6_A RUVB-like 2; hexameric 96.8 0.0017 5.9E-08 62.2 7.0 39 213-251 68-106 (368)
255 1gvn_B Zeta; postsegregational 96.8 0.00067 2.3E-08 63.5 3.9 35 214-250 32-66 (287)
256 3trf_A Shikimate kinase, SK; a 96.8 0.00067 2.3E-08 58.4 3.6 26 214-239 4-29 (185)
257 2v54_A DTMP kinase, thymidylat 96.8 0.00082 2.8E-08 58.7 4.0 26 214-239 3-28 (204)
258 1vht_A Dephospho-COA kinase; s 96.8 0.00088 3E-08 59.5 4.1 24 214-237 3-26 (218)
259 2rhm_A Putative kinase; P-loop 96.7 0.00064 2.2E-08 58.8 2.9 27 213-239 3-29 (193)
260 3lw7_A Adenylate kinase relate 96.7 0.00077 2.6E-08 56.8 3.3 19 217-235 3-21 (179)
261 3iij_A Coilin-interacting nucl 96.7 0.00053 1.8E-08 58.9 2.3 27 213-239 9-35 (180)
262 1ko7_A HPR kinase/phosphatase; 96.7 0.00062 2.1E-08 64.5 2.9 33 204-237 134-166 (314)
263 1ex7_A Guanylate kinase; subst 96.7 0.00072 2.4E-08 59.2 3.0 44 217-262 3-59 (186)
264 1fzq_A ADP-ribosylation factor 96.7 0.00077 2.6E-08 57.9 3.0 36 216-251 17-60 (181)
265 1jal_A YCHF protein; nucleotid 96.7 0.0015 5.1E-08 63.2 5.2 36 215-250 2-48 (363)
266 2wwf_A Thymidilate kinase, put 96.6 0.0011 3.7E-08 58.3 3.4 27 213-239 8-34 (212)
267 2plr_A DTMP kinase, probable t 96.6 0.0012 4.2E-08 57.7 3.8 28 214-241 3-30 (213)
268 3dm5_A SRP54, signal recogniti 96.6 0.0065 2.2E-07 60.2 9.4 35 214-248 99-133 (443)
269 4dcu_A GTP-binding protein ENG 96.6 0.0029 9.9E-08 63.0 6.9 22 216-237 24-45 (456)
270 2c95_A Adenylate kinase 1; tra 96.6 0.001 3.5E-08 57.6 3.2 27 213-239 7-33 (196)
271 1via_A Shikimate kinase; struc 96.6 0.001 3.6E-08 56.8 3.1 23 217-239 6-28 (175)
272 1nn5_A Similar to deoxythymidy 96.6 0.0012 4E-08 58.1 3.4 28 212-239 6-33 (215)
273 2ze6_A Isopentenyl transferase 96.6 0.001 3.5E-08 60.9 3.1 23 217-239 3-25 (253)
274 3cf0_A Transitional endoplasmi 96.5 0.00097 3.3E-08 62.6 2.8 39 210-250 44-82 (301)
275 1xjc_A MOBB protein homolog; s 96.5 0.001 3.4E-08 57.4 2.5 27 216-242 5-31 (169)
276 1ly1_A Polynucleotide kinase; 96.5 0.0014 4.9E-08 55.7 3.4 22 216-237 3-24 (181)
277 2bwj_A Adenylate kinase 5; pho 96.5 0.00053 1.8E-08 59.6 0.5 29 211-239 8-36 (199)
278 1tev_A UMP-CMP kinase; ploop, 96.4 0.0016 5.3E-08 56.2 3.3 26 214-239 2-27 (196)
279 2vli_A Antibiotic resistance p 96.4 0.0013 4.5E-08 56.3 2.4 27 213-239 3-29 (183)
280 1nks_A Adenylate kinase; therm 96.3 0.0018 6.1E-08 55.7 3.1 24 217-240 3-26 (194)
281 3auy_A DNA double-strand break 96.3 0.002 7E-08 62.3 3.8 31 205-236 16-46 (371)
282 1aky_A Adenylate kinase; ATP:A 96.3 0.0023 7.9E-08 56.8 3.8 27 213-239 2-28 (220)
283 3ake_A Cytidylate kinase; CMP 96.3 0.0022 7.4E-08 56.1 3.3 23 217-239 4-26 (208)
284 2erx_A GTP-binding protein DI- 96.3 0.0044 1.5E-07 51.6 5.0 21 217-237 5-25 (172)
285 2cdn_A Adenylate kinase; phosp 96.2 0.0027 9.3E-08 55.4 3.8 26 214-239 19-44 (201)
286 2z0h_A DTMP kinase, thymidylat 96.2 0.0024 8E-08 55.3 3.3 23 217-239 2-24 (197)
287 3d8b_A Fidgetin-like protein 1 96.2 0.014 4.9E-07 55.9 9.1 27 213-239 115-141 (357)
288 3zvl_A Bifunctional polynucleo 96.2 0.012 4.1E-07 57.8 8.7 29 211-239 254-282 (416)
289 3cbq_A GTP-binding protein REM 96.2 0.0022 7.6E-08 55.8 3.0 22 217-238 25-46 (195)
290 4fcw_A Chaperone protein CLPB; 96.2 0.0019 6.6E-08 60.2 2.7 33 215-247 47-79 (311)
291 3fb4_A Adenylate kinase; psych 96.2 0.0026 8.7E-08 56.2 3.3 23 217-239 2-24 (216)
292 1e6c_A Shikimate kinase; phosp 96.2 0.0025 8.5E-08 54.0 3.1 24 216-239 3-26 (173)
293 1zd8_A GTP:AMP phosphotransfer 96.2 0.0026 9E-08 56.8 3.4 27 213-239 5-31 (227)
294 2iyv_A Shikimate kinase, SK; t 96.2 0.0024 8.3E-08 54.8 3.0 25 215-239 2-26 (184)
295 3k53_A Ferrous iron transport 96.2 0.0024 8E-08 58.9 3.1 24 217-240 5-28 (271)
296 1z2a_A RAS-related protein RAB 96.2 0.0028 9.6E-08 52.7 3.3 22 217-238 7-28 (168)
297 3bgw_A DNAB-like replicative h 96.2 0.011 3.7E-07 58.7 8.1 35 204-238 186-220 (444)
298 1zuh_A Shikimate kinase; alpha 96.2 0.003 1E-07 53.4 3.5 24 216-239 8-31 (168)
299 2dby_A GTP-binding protein; GD 96.1 0.003 1E-07 61.2 3.8 23 217-239 3-25 (368)
300 2ged_A SR-beta, signal recogni 96.1 0.0029 1E-07 54.3 3.4 26 215-240 48-73 (193)
301 1z0j_A RAB-22, RAS-related pro 96.1 0.0046 1.6E-07 51.5 4.5 23 217-239 8-30 (170)
302 1a7j_A Phosphoribulokinase; tr 96.1 0.0014 4.9E-08 61.3 1.4 26 214-239 4-29 (290)
303 2pt5_A Shikimate kinase, SK; a 96.1 0.0031 1.1E-07 53.1 3.4 23 217-239 2-24 (168)
304 1zak_A Adenylate kinase; ATP:A 96.1 0.0025 8.7E-08 56.6 2.9 26 214-239 4-29 (222)
305 1v5w_A DMC1, meiotic recombina 96.1 0.0042 1.4E-07 59.5 4.6 28 211-238 118-145 (343)
306 1kao_A RAP2A; GTP-binding prot 96.1 0.0033 1.1E-07 52.1 3.4 22 217-238 5-26 (167)
307 3dl0_A Adenylate kinase; phosp 96.1 0.0029 9.8E-08 55.9 3.1 23 217-239 2-24 (216)
308 1ukz_A Uridylate kinase; trans 96.1 0.0029 1E-07 55.2 3.1 26 214-239 14-39 (203)
309 2dyk_A GTP-binding protein; GT 96.1 0.0034 1.2E-07 51.9 3.4 23 217-239 3-25 (161)
310 3lxw_A GTPase IMAP family memb 96.1 0.0032 1.1E-07 57.3 3.4 24 216-239 22-45 (247)
311 2grj_A Dephospho-COA kinase; T 96.1 0.0032 1.1E-07 55.2 3.3 24 216-239 13-36 (192)
312 2pbr_A DTMP kinase, thymidylat 96.1 0.0033 1.1E-07 54.1 3.3 23 217-239 2-24 (195)
313 2nzj_A GTP-binding protein REM 96.1 0.0034 1.2E-07 52.7 3.3 23 217-239 6-28 (175)
314 3q72_A GTP-binding protein RAD 96.1 0.0027 9.1E-08 52.9 2.7 24 217-240 4-27 (166)
315 1qf9_A UMP/CMP kinase, protein 96.1 0.0025 8.6E-08 54.7 2.6 25 215-239 6-30 (194)
316 2ce2_X GTPase HRAS; signaling 96.1 0.0032 1.1E-07 52.1 3.1 23 217-239 5-27 (166)
317 1u8z_A RAS-related protein RAL 96.0 0.0035 1.2E-07 51.9 3.3 22 217-238 6-27 (168)
318 1uj2_A Uridine-cytidine kinase 96.0 0.0034 1.1E-07 57.2 3.3 24 216-239 23-46 (252)
319 1z08_A RAS-related protein RAB 96.0 0.0038 1.3E-07 52.1 3.4 22 217-238 8-29 (170)
320 3q85_A GTP-binding protein REM 96.0 0.0037 1.3E-07 52.2 3.3 23 217-239 4-26 (169)
321 1c1y_A RAS-related protein RAP 96.0 0.0038 1.3E-07 51.8 3.3 22 217-238 5-26 (167)
322 1ky3_A GTP-binding protein YPT 96.0 0.0039 1.3E-07 52.6 3.4 23 217-239 10-32 (182)
323 2lkc_A Translation initiation 96.0 0.0046 1.6E-07 52.1 3.8 26 213-238 6-31 (178)
324 1ek0_A Protein (GTP-binding pr 96.0 0.0039 1.3E-07 51.9 3.3 23 217-239 5-27 (170)
325 1g16_A RAS-related protein SEC 96.0 0.0036 1.2E-07 52.2 3.1 23 217-239 5-27 (170)
326 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0041 1.4E-07 52.4 3.4 22 217-238 9-30 (177)
327 3tlx_A Adenylate kinase 2; str 96.0 0.0037 1.3E-07 56.7 3.3 26 214-239 28-53 (243)
328 2ew1_A RAS-related protein RAB 95.9 0.0076 2.6E-07 52.7 5.2 22 217-238 28-49 (201)
329 2fn4_A P23, RAS-related protei 95.9 0.0038 1.3E-07 52.6 3.1 22 217-238 11-32 (181)
330 3t1o_A Gliding protein MGLA; G 95.9 0.0044 1.5E-07 53.0 3.5 25 217-241 16-40 (198)
331 2w58_A DNAI, primosome compone 95.9 0.0044 1.5E-07 54.1 3.5 27 216-242 55-81 (202)
332 3bos_A Putative DNA replicatio 95.9 0.0035 1.2E-07 55.6 2.9 28 214-241 51-78 (242)
333 3tw8_B RAS-related protein RAB 95.9 0.0039 1.3E-07 52.5 3.0 22 217-238 11-32 (181)
334 3t5d_A Septin-7; GTP-binding p 95.9 0.0033 1.1E-07 58.0 2.8 23 217-239 10-32 (274)
335 1svi_A GTP-binding protein YSX 95.9 0.0037 1.3E-07 53.7 2.9 24 215-238 23-46 (195)
336 1r2q_A RAS-related protein RAB 95.9 0.0046 1.6E-07 51.4 3.3 21 217-237 8-28 (170)
337 3b1v_A Ferrous iron uptake tra 95.9 0.0043 1.5E-07 57.5 3.3 23 217-239 5-27 (272)
338 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0043 1.5E-07 56.8 3.4 26 214-239 3-28 (260)
339 3pqc_A Probable GTP-binding pr 95.9 0.0039 1.3E-07 53.3 2.9 24 216-239 24-47 (195)
340 3a8t_A Adenylate isopentenyltr 95.9 0.0049 1.7E-07 58.9 3.8 28 213-240 38-65 (339)
341 3clv_A RAB5 protein, putative; 95.9 0.0047 1.6E-07 53.0 3.4 22 217-238 9-30 (208)
342 4dsu_A GTPase KRAS, isoform 2B 95.8 0.0048 1.6E-07 52.4 3.4 23 217-239 6-28 (189)
343 2oil_A CATX-8, RAS-related pro 95.8 0.0049 1.7E-07 53.0 3.4 22 217-238 27-48 (193)
344 3bc1_A RAS-related protein RAB 95.8 0.0049 1.7E-07 52.5 3.3 22 217-238 13-34 (195)
345 2f6r_A COA synthase, bifunctio 95.8 0.0043 1.5E-07 57.7 3.1 23 215-237 75-97 (281)
346 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0063 2.2E-07 52.0 4.0 22 217-238 9-30 (184)
347 1r8s_A ADP-ribosylation factor 95.8 0.0052 1.8E-07 51.0 3.3 21 217-237 2-22 (164)
348 1upt_A ARL1, ADP-ribosylation 95.8 0.0053 1.8E-07 51.3 3.3 23 215-237 7-29 (171)
349 1ypw_A Transitional endoplasmi 95.8 0.00049 1.7E-08 73.6 -4.0 45 208-254 504-548 (806)
350 2hxs_A RAB-26, RAS-related pro 95.8 0.0057 2E-07 51.5 3.5 22 217-238 8-29 (178)
351 2qmh_A HPR kinase/phosphorylas 95.8 0.0072 2.5E-07 53.3 4.1 35 204-239 24-58 (205)
352 2g6b_A RAS-related protein RAB 95.7 0.0055 1.9E-07 51.7 3.3 23 217-239 12-34 (180)
353 2cxx_A Probable GTP-binding pr 95.7 0.0046 1.6E-07 52.7 2.8 23 217-239 3-25 (190)
354 2y8e_A RAB-protein 6, GH09086P 95.7 0.0051 1.8E-07 51.7 3.1 22 217-238 16-37 (179)
355 1z0f_A RAB14, member RAS oncog 95.7 0.0059 2E-07 51.3 3.3 23 217-239 17-39 (179)
356 1wf3_A GTP-binding protein; GT 95.7 0.0054 1.9E-07 57.6 3.4 22 217-238 9-30 (301)
357 3n70_A Transport activator; si 95.7 0.0077 2.6E-07 49.9 4.0 33 213-245 22-54 (145)
358 3con_A GTPase NRAS; structural 95.7 0.0059 2E-07 52.2 3.3 22 217-238 23-44 (190)
359 2a9k_A RAS-related protein RAL 95.7 0.006 2.1E-07 51.6 3.3 22 217-238 20-41 (187)
360 3be4_A Adenylate kinase; malar 95.7 0.0055 1.9E-07 54.4 3.2 26 214-239 4-29 (217)
361 2efe_B Small GTP-binding prote 95.7 0.0062 2.1E-07 51.4 3.4 23 217-239 14-36 (181)
362 2h92_A Cytidylate kinase; ross 95.6 0.0056 1.9E-07 54.1 3.0 25 215-239 3-27 (219)
363 2xtp_A GTPase IMAP family memb 95.6 0.0059 2E-07 55.5 3.2 24 216-239 23-46 (260)
364 3d3q_A TRNA delta(2)-isopenten 95.6 0.0059 2E-07 58.4 3.2 25 216-240 8-32 (340)
365 1vg8_A RAS-related protein RAB 95.6 0.007 2.4E-07 52.4 3.4 23 217-239 10-32 (207)
366 3t5g_A GTP-binding protein RHE 95.6 0.011 3.7E-07 50.0 4.5 21 217-237 8-28 (181)
367 2gf9_A RAS-related protein RAB 95.6 0.007 2.4E-07 51.9 3.3 23 217-239 24-46 (189)
368 2bme_A RAB4A, RAS-related prot 95.6 0.0064 2.2E-07 51.7 3.1 22 217-238 12-33 (186)
369 3iby_A Ferrous iron transport 95.6 0.0061 2.1E-07 55.8 3.1 23 217-239 3-25 (256)
370 3kkq_A RAS-related protein M-R 95.6 0.0072 2.5E-07 51.3 3.3 22 217-238 20-41 (183)
371 1nrj_B SR-beta, signal recogni 95.5 0.0071 2.4E-07 53.1 3.3 24 216-239 13-36 (218)
372 2bov_A RAla, RAS-related prote 95.5 0.0072 2.5E-07 52.3 3.3 22 217-238 16-37 (206)
373 3iev_A GTP-binding protein ERA 95.5 0.0068 2.3E-07 57.0 3.4 24 216-239 11-34 (308)
374 3exa_A TRNA delta(2)-isopenten 95.5 0.0078 2.7E-07 56.9 3.7 25 215-239 3-27 (322)
375 1moz_A ARL1, ADP-ribosylation 95.5 0.0041 1.4E-07 52.8 1.7 24 214-237 17-40 (183)
376 2xb4_A Adenylate kinase; ATP-b 95.5 0.0072 2.5E-07 53.9 3.4 23 217-239 2-24 (223)
377 1jbk_A CLPB protein; beta barr 95.5 0.0084 2.9E-07 50.8 3.7 28 213-240 41-68 (195)
378 1sky_E F1-ATPase, F1-ATP synth 95.5 0.0037 1.3E-07 62.3 1.5 43 204-247 141-183 (473)
379 3tkl_A RAS-related protein RAB 95.5 0.0075 2.6E-07 51.7 3.3 23 217-239 18-40 (196)
380 4bas_A ADP-ribosylation factor 95.5 0.0094 3.2E-07 51.2 4.0 22 216-237 18-39 (199)
381 1z06_A RAS-related protein RAB 95.5 0.0078 2.7E-07 51.6 3.4 22 217-238 22-43 (189)
382 2fg5_A RAB-22B, RAS-related pr 95.5 0.007 2.4E-07 52.1 3.1 22 217-238 25-46 (192)
383 2cjw_A GTP-binding protein GEM 95.5 0.0076 2.6E-07 52.2 3.3 22 217-238 8-29 (192)
384 1e4v_A Adenylate kinase; trans 95.5 0.0068 2.3E-07 53.5 3.0 23 217-239 2-24 (214)
385 2gf0_A GTP-binding protein DI- 95.5 0.0071 2.4E-07 52.0 3.1 21 217-237 10-30 (199)
386 1mh1_A RAC1; GTP-binding, GTPa 95.5 0.0079 2.7E-07 50.9 3.3 21 217-237 7-27 (186)
387 1ksh_A ARF-like protein 2; sma 95.5 0.0077 2.6E-07 51.3 3.2 26 213-238 16-41 (186)
388 4dhe_A Probable GTP-binding pr 95.5 0.0041 1.4E-07 54.8 1.5 25 215-239 29-53 (223)
389 3v9p_A DTMP kinase, thymidylat 95.4 0.0068 2.3E-07 54.6 2.9 28 213-240 23-50 (227)
390 3tmk_A Thymidylate kinase; pho 95.4 0.0089 3E-07 53.4 3.7 29 213-241 3-31 (216)
391 1ak2_A Adenylate kinase isoenz 95.4 0.0091 3.1E-07 53.5 3.8 26 214-239 15-40 (233)
392 1zbd_A Rabphilin-3A; G protein 95.4 0.0084 2.9E-07 51.9 3.4 23 217-239 10-32 (203)
393 3tqf_A HPR(Ser) kinase; transf 95.4 0.015 5.2E-07 50.1 4.8 32 205-237 7-38 (181)
394 3oes_A GTPase rhebl1; small GT 95.4 0.0075 2.6E-07 52.3 3.1 25 215-239 24-48 (201)
395 2a5j_A RAS-related protein RAB 95.4 0.0086 2.9E-07 51.4 3.4 22 217-238 23-44 (191)
396 2fv8_A H6, RHO-related GTP-bin 95.4 0.0037 1.2E-07 54.7 1.0 34 205-238 15-48 (207)
397 2qu8_A Putative nucleolar GTP- 95.4 0.0081 2.8E-07 53.4 3.2 23 216-238 30-52 (228)
398 1gwn_A RHO-related GTP-binding 95.4 0.013 4.3E-07 51.4 4.4 22 217-238 30-51 (205)
399 3bwd_D RAC-like GTP-binding pr 95.4 0.01 3.5E-07 50.1 3.7 24 215-238 8-31 (182)
400 3dz8_A RAS-related protein RAB 95.4 0.0081 2.8E-07 51.6 3.1 23 217-239 25-47 (191)
401 4edh_A DTMP kinase, thymidylat 95.4 0.0088 3E-07 53.3 3.3 28 213-240 4-31 (213)
402 3i8s_A Ferrous iron transport 95.4 0.0079 2.7E-07 55.6 3.2 23 217-239 5-27 (274)
403 2wsm_A Hydrogenase expression/ 95.4 0.0081 2.8E-07 52.9 3.1 24 216-239 31-54 (221)
404 2il1_A RAB12; G-protein, GDP, 95.4 0.0079 2.7E-07 51.8 3.0 22 217-238 28-49 (192)
405 3a1s_A Iron(II) transport prot 95.3 0.0092 3.2E-07 54.7 3.4 23 217-239 7-29 (258)
406 3reg_A RHO-like small GTPase; 95.3 0.0096 3.3E-07 51.2 3.3 22 217-238 25-46 (194)
407 1zd9_A ADP-ribosylation factor 95.3 0.0096 3.3E-07 51.0 3.3 21 217-237 24-44 (188)
408 3cph_A RAS-related protein SEC 95.3 0.0095 3.3E-07 51.8 3.3 23 216-238 21-43 (213)
409 3lv8_A DTMP kinase, thymidylat 95.3 0.0096 3.3E-07 54.0 3.4 27 214-240 26-52 (236)
410 2atv_A RERG, RAS-like estrogen 95.3 0.0099 3.4E-07 51.3 3.4 23 216-238 29-51 (196)
411 1x3s_A RAS-related protein RAB 95.3 0.0098 3.3E-07 50.8 3.3 22 217-238 17-38 (195)
412 2p5s_A RAS and EF-hand domain 95.3 0.0099 3.4E-07 51.5 3.4 26 214-239 27-52 (199)
413 1zj6_A ADP-ribosylation factor 95.3 0.0092 3.2E-07 51.0 3.1 23 215-237 16-38 (187)
414 2bcg_Y Protein YP2, GTP-bindin 95.3 0.009 3.1E-07 51.9 3.1 22 217-238 10-31 (206)
415 3llu_A RAS-related GTP-binding 95.3 0.0098 3.3E-07 51.4 3.2 24 217-240 22-45 (196)
416 3cnl_A YLQF, putative uncharac 95.2 0.01 3.5E-07 54.6 3.5 30 216-245 100-129 (262)
417 1jwy_B Dynamin A GTPase domain 95.2 0.0088 3E-07 55.9 3.1 24 217-240 26-49 (315)
418 2o52_A RAS-related protein RAB 95.2 0.0092 3.1E-07 51.9 3.0 22 217-238 27-48 (200)
419 3def_A T7I23.11 protein; chlor 95.2 0.0093 3.2E-07 54.6 3.2 23 217-239 38-60 (262)
420 1ltq_A Polynucleotide kinase; 95.2 0.0098 3.4E-07 55.3 3.4 23 216-238 3-25 (301)
421 3crm_A TRNA delta(2)-isopenten 95.2 0.0098 3.3E-07 56.5 3.3 25 216-240 6-30 (323)
422 2iwr_A Centaurin gamma 1; ANK 95.2 0.0082 2.8E-07 50.7 2.6 22 217-238 9-30 (178)
423 2h17_A ADP-ribosylation factor 95.2 0.0084 2.9E-07 51.0 2.6 22 217-238 23-44 (181)
424 4tmk_A Protein (thymidylate ki 95.2 0.011 3.8E-07 52.7 3.5 27 214-240 2-28 (213)
425 2h57_A ADP-ribosylation factor 95.2 0.0073 2.5E-07 51.8 2.2 24 216-239 22-45 (190)
426 1h65_A Chloroplast outer envel 95.2 0.0096 3.3E-07 54.7 3.1 23 217-239 41-63 (270)
427 3c5c_A RAS-like protein 12; GD 95.2 0.011 3.9E-07 50.7 3.4 21 217-237 23-43 (187)
428 2f7s_A C25KG, RAS-related prot 95.2 0.011 3.8E-07 51.7 3.4 23 217-239 27-49 (217)
429 2ocp_A DGK, deoxyguanosine kin 95.2 0.0097 3.3E-07 53.6 3.0 27 214-240 1-27 (241)
430 3ld9_A DTMP kinase, thymidylat 95.2 0.011 3.8E-07 53.1 3.3 28 213-240 19-46 (223)
431 1u94_A RECA protein, recombina 95.1 0.01 3.5E-07 57.2 3.2 36 204-240 50-88 (356)
432 2q3h_A RAS homolog gene family 95.1 0.012 4E-07 50.9 3.3 24 215-238 20-43 (201)
433 2xxa_A Signal recognition part 95.1 0.071 2.4E-06 52.6 9.3 35 214-248 99-134 (433)
434 2j1l_A RHO-related GTP-binding 95.1 0.011 3.7E-07 52.0 3.1 21 217-237 36-56 (214)
435 2p65_A Hypothetical protein PF 95.1 0.01 3.6E-07 50.1 2.9 29 213-241 41-69 (187)
436 2aka_B Dynamin-1; fusion prote 95.1 0.01 3.4E-07 55.0 2.9 23 217-239 28-50 (299)
437 2fh5_B SR-beta, signal recogni 95.1 0.017 5.7E-07 50.5 4.2 23 216-238 8-30 (214)
438 2gco_A H9, RHO-related GTP-bin 95.1 0.011 3.9E-07 51.2 3.1 22 217-238 27-48 (201)
439 3umf_A Adenylate kinase; rossm 95.1 0.0098 3.4E-07 53.2 2.7 30 210-239 24-53 (217)
440 1p5z_B DCK, deoxycytidine kina 95.1 0.0076 2.6E-07 55.1 2.0 28 213-240 22-49 (263)
441 3foz_A TRNA delta(2)-isopenten 95.0 0.012 4.1E-07 55.5 3.3 26 215-240 10-35 (316)
442 2fu5_C RAS-related protein RAB 95.0 0.008 2.7E-07 51.0 1.9 22 217-238 10-31 (183)
443 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.015 5E-07 52.6 3.7 27 213-239 37-63 (262)
444 2atx_A Small GTP binding prote 94.9 0.013 4.5E-07 50.2 3.1 22 217-238 20-41 (194)
445 2b6h_A ADP-ribosylation factor 94.9 0.012 3.9E-07 50.9 2.7 25 213-237 27-51 (192)
446 2v3c_C SRP54, signal recogniti 94.9 0.0045 1.5E-07 61.3 -0.0 38 215-252 99-136 (432)
447 2g3y_A GTP-binding protein GEM 94.9 0.015 5E-07 51.6 3.3 22 217-238 39-60 (211)
448 2zts_A Putative uncharacterize 94.9 0.019 6.4E-07 51.3 4.1 25 212-236 27-51 (251)
449 2r62_A Cell division protease 94.9 0.0047 1.6E-07 56.4 0.0 31 206-238 37-67 (268)
450 2hf9_A Probable hydrogenase ni 94.9 0.013 4.6E-07 51.6 3.1 23 217-239 40-62 (226)
451 2i1q_A DNA repair and recombin 94.8 0.015 5.2E-07 54.8 3.4 27 211-237 94-120 (322)
452 4djt_A GTP-binding nuclear pro 94.7 0.0073 2.5E-07 53.0 0.9 22 217-238 13-34 (218)
453 4gzl_A RAS-related C3 botulinu 94.7 0.016 5.5E-07 50.5 3.1 23 215-237 30-52 (204)
454 2hup_A RAS-related protein RAB 94.7 0.016 5.6E-07 50.3 3.1 22 217-238 31-52 (201)
455 1lw7_A Transcriptional regulat 94.7 0.0036 1.2E-07 60.4 -1.4 54 327-380 258-323 (365)
456 3cpj_B GTP-binding protein YPT 94.7 0.019 6.4E-07 50.7 3.4 22 217-238 15-36 (223)
457 1njg_A DNA polymerase III subu 94.6 0.021 7.3E-07 50.0 3.7 36 205-240 32-70 (250)
458 2x77_A ADP-ribosylation factor 94.6 0.011 3.8E-07 50.5 1.7 24 214-237 21-44 (189)
459 3eph_A TRNA isopentenyltransfe 94.6 0.016 5.6E-07 56.5 3.0 24 216-239 3-26 (409)
460 3r7w_A Gtpase1, GTP-binding pr 94.6 0.018 6E-07 54.1 3.2 26 214-239 2-27 (307)
461 3q3j_B RHO-related GTP-binding 94.6 0.02 6.8E-07 50.4 3.3 23 216-238 28-50 (214)
462 2yc2_C IFT27, small RAB-relate 94.5 0.0084 2.9E-07 51.8 0.8 22 217-238 22-43 (208)
463 3ec1_A YQEH GTPase; atnos1, at 94.4 0.021 7.3E-07 55.2 3.4 25 214-238 161-185 (369)
464 2j0v_A RAC-like GTP-binding pr 94.3 0.022 7.4E-07 49.6 3.1 22 217-238 11-32 (212)
465 4hlc_A DTMP kinase, thymidylat 94.3 0.024 8.3E-07 50.1 3.3 26 215-240 2-27 (205)
466 1puj_A YLQF, conserved hypothe 94.3 0.026 9E-07 52.4 3.6 27 215-241 120-146 (282)
467 2orw_A Thymidine kinase; TMTK, 94.1 0.024 8.2E-07 49.1 2.8 25 214-238 2-27 (184)
468 3h2y_A GTPase family protein; 94.1 0.022 7.6E-07 55.0 2.8 26 214-239 159-184 (368)
469 3syl_A Protein CBBX; photosynt 94.1 0.029 9.8E-07 52.1 3.5 26 214-239 66-91 (309)
470 3p32_A Probable GTPase RV1496/ 94.0 0.025 8.4E-07 54.3 3.0 27 215-241 79-105 (355)
471 3cmu_A Protein RECA, recombina 94.0 0.15 5.3E-06 59.0 9.9 35 203-237 1067-1103(2050)
472 3hws_A ATP-dependent CLP prote 94.0 0.027 9.2E-07 53.9 3.1 26 214-239 50-75 (363)
473 1g8f_A Sulfate adenylyltransfe 93.9 0.025 8.6E-07 57.0 2.9 29 213-241 393-421 (511)
474 3sr0_A Adenylate kinase; phosp 93.9 0.033 1.1E-06 49.2 3.3 24 217-240 2-25 (206)
475 2bjv_A PSP operon transcriptio 93.8 0.052 1.8E-06 49.3 4.6 37 213-249 27-64 (265)
476 2hjg_A GTP-binding protein ENG 93.8 0.027 9.2E-07 55.6 2.8 23 217-239 5-27 (436)
477 1xwi_A SKD1 protein; VPS4B, AA 93.8 0.037 1.3E-06 52.3 3.6 27 213-239 43-69 (322)
478 1xp8_A RECA protein, recombina 93.8 0.029 9.9E-07 54.2 2.9 29 211-239 70-98 (366)
479 2chg_A Replication factor C sm 93.7 0.036 1.2E-06 47.9 3.3 23 217-239 40-62 (226)
480 1tue_A Replication protein E1; 93.7 0.03 1E-06 49.6 2.7 28 212-239 55-82 (212)
481 2v1u_A Cell division control p 93.7 0.031 1E-06 53.2 2.9 28 213-240 42-69 (387)
482 1m8p_A Sulfate adenylyltransfe 93.7 0.032 1.1E-06 57.2 3.1 27 214-240 395-421 (573)
483 1wxq_A GTP-binding protein; st 93.6 0.033 1.1E-06 54.4 3.1 23 217-239 2-24 (397)
484 2x2e_A Dynamin-1; nitration, h 93.6 0.024 8.2E-07 54.2 2.0 23 217-239 33-55 (353)
485 3geh_A MNME, tRNA modification 93.6 0.026 8.8E-07 56.3 2.3 45 213-257 222-278 (462)
486 1x6v_B Bifunctional 3'-phospho 93.6 0.036 1.2E-06 57.3 3.3 39 214-252 51-90 (630)
487 3gj0_A GTP-binding nuclear pro 93.6 0.026 9E-07 49.6 2.1 41 334-374 165-210 (221)
488 3th5_A RAS-related C3 botulinu 92.7 0.013 4.4E-07 50.9 0.0 24 214-237 29-52 (204)
489 3pvs_A Replication-associated 93.5 0.024 8.1E-07 56.3 1.8 37 206-242 39-77 (447)
490 2vhj_A Ntpase P4, P4; non- hyd 93.5 0.04 1.4E-06 52.2 3.3 29 210-238 118-146 (331)
491 1d2n_A N-ethylmaleimide-sensit 93.5 0.035 1.2E-06 50.7 2.9 27 213-239 62-88 (272)
492 3l0o_A Transcription terminati 93.5 0.016 5.6E-07 56.2 0.6 33 207-239 167-199 (427)
493 1ofh_A ATP-dependent HSL prote 93.5 0.041 1.4E-06 50.8 3.3 26 215-240 50-75 (310)
494 3t15_A Ribulose bisphosphate c 93.4 0.044 1.5E-06 51.0 3.4 27 213-239 34-60 (293)
495 3l0i_B RAS-related protein RAB 93.3 0.0089 3E-07 51.8 -1.5 23 217-239 35-57 (199)
496 3eie_A Vacuolar protein sortin 93.3 0.051 1.8E-06 51.1 3.7 27 213-239 49-75 (322)
497 2ewv_A Twitching motility prot 93.2 0.098 3.3E-06 50.5 5.7 40 335-380 199-238 (372)
498 1lnz_A SPO0B-associated GTP-bi 93.1 0.05 1.7E-06 52.0 3.4 33 206-238 149-181 (342)
499 2qgz_A Helicase loader, putati 93.1 0.057 1.9E-06 50.7 3.7 26 215-240 152-177 (308)
500 3gmt_A Adenylate kinase; ssgci 93.1 0.053 1.8E-06 48.8 3.4 24 216-239 9-32 (230)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.9e-75 Score=650.53 Aligned_cols=377 Identities=32% Similarity=0.425 Sum_probs=341.4
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.+++++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++.
T Consensus 229 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 308 (1321)
T 4f4c_A 229 IVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEA 308 (1321)
T ss_dssp HHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+......+......+ ..+..++++++|++++..|.+++|.+++++.++..+..|+..++..+..++++..+++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~r 388 (1321)
T 4f4c_A 309 KKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASG 388 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666665555444433332 34456777889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCC-CCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 162 LFDLTKFKSKVIEKPD-AVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++++.+++...... .....+..++|+|+||+|+||+. +.++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 389 i~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 389 IYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp HHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred HHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 9999987665433222 22223346789999999999864 457999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+|+++++.+++|++|+||+|+|+||++||+|||+||++ +.++++++++|+.++++++++.||+||||
T Consensus 469 ~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~lp~G~~T 546 (1321)
T 4f4c_A 469 DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNT 546 (1321)
T ss_dssp CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHHSTTTTSS
T ss_pred ccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc--cchHHHHHHHHHHccchhHHHcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999986 46899999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.|||+|.+||||||||||||||+++||+|||||||||+||+++|+.++++|+++.++||+|.
T Consensus 547 ~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ii 608 (1321)
T 4f4c_A 547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608 (1321)
T ss_dssp EESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEE
T ss_pred EecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 2
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4e-73 Score=589.83 Aligned_cols=377 Identities=28% Similarity=0.464 Sum_probs=336.4
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++.
T Consensus 156 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 235 (587)
T 3qf4_A 156 VMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESL 235 (587)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+.......+.. +..+..++++++|++++..|.+++|.++++..+...+..|+..++..+..++++..+.+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 315 (587)
T 3qf4_A 236 RRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKR 315 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666665554444333332 223446677888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..+.......+...+.|+++||+|+|+++++++|+|+||+|++||++|||||||||||||+++|+|+++|
T Consensus 316 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 316 VLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp HHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred HHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 99999876543322222222234568999999999986666799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+|+.+++.+++|++|+||||+|++|++||+||+.++.+ ..+++++.++++.++++++++.+|+|+||.+
T Consensus 396 ~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~ 473 (587)
T 3qf4_A 396 ERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRV 473 (587)
T ss_dssp SEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEE
T ss_pred CCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHh
Confidence 99999999999999999999999999999999999999999999875 3578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+|+|||||||+||+++++.+++.++++.+++|+|.
T Consensus 474 ~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 533 (587)
T 3qf4_A 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533 (587)
T ss_dssp CSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEE
T ss_pred cCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988999874
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.6e-73 Score=590.66 Aligned_cols=377 Identities=35% Similarity=0.535 Sum_probs=338.7
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++.
T Consensus 154 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 233 (578)
T 4a82_A 154 SIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233 (578)
T ss_dssp HHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+........... ..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..++++..+++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 313 (578)
T 4a82_A 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666555544444333 23445677888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..+.....+.+...+.|+++||+|+|+++++++|+|+||+|++||++|||||||||||||+++|+|+++|
T Consensus 314 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 314 VFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp HHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred HHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 99999876553322222222334568999999999987556799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+.+++.+++|++++||||+|++|++|++||+.++.+ ..+++++.++++.++++++++++|+|+||.+
T Consensus 394 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~ 471 (578)
T 4a82_A 394 TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEV 471 (578)
T ss_dssp SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC
T ss_pred CCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhh
Confidence 99999999999999999999999999999999999999999999875 3578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|.
T Consensus 472 ~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 531 (578)
T 4a82_A 472 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLI 531 (578)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred ccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
No 4
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-71 Score=580.29 Aligned_cols=379 Identities=35% Similarity=0.510 Sum_probs=335.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++.
T Consensus 155 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 234 (595)
T 2yl4_A 155 SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHV 234 (595)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 45788999999999999999998888999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+......+. .+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+.+|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~r 314 (595)
T 2yl4_A 235 MQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGR 314 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555444433322 3345667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCc-EEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGD-VKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++++.+++........+.+...++ |+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|++
T Consensus 315 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 315 LWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp HHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred HHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 99999866543221111111223457 9999999999754 246999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCC-CCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM-TKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
+|++|+|.+||+|+.+++..++|++++||||+|.+|++|++||+.++.+. .+.++++++++++.++++++++++|+|+|
T Consensus 395 ~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~ 474 (595)
T 2yl4_A 395 DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFN 474 (595)
T ss_dssp CCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGG
T ss_pred CCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCccccc
Confidence 99999999999999999999999999999999999999999999998653 12578999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 475 ~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 537 (595)
T 2yl4_A 475 TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 537 (595)
T ss_dssp CBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999988899874
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=8.8e-72 Score=579.74 Aligned_cols=376 Identities=35% Similarity=0.537 Sum_probs=335.3
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++.
T Consensus 158 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 237 (582)
T 3b5x_A 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSM 237 (582)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 46788999999999999999998888899999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+...+..++ .+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 317 (582)
T 3b5x_A 238 RQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQT 317 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666555544444332 3445667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++.... ..+.+...+.|+++||+|+|+++++++|+|+||+|++||++|||||||||||||+++|+|+++|
T Consensus 318 i~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 318 LFGLMDLETERDNG--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred HHHHHcCCCcCCCC--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999866543211 1111223467999999999985435799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+.+.+..++|++++||||+|++|++|++||+.++.. .+.++++++++++.++++++++++|+||||.+
T Consensus 396 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~ 474 (582)
T 3b5x_A 396 DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474 (582)
T ss_pred CCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC-CCCCHHHHHHHHHHCCCHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999999999999861 13578899999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 475 ~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 534 (582)
T 3b5x_A 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534 (582)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
No 6
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.6e-74 Score=640.93 Aligned_cols=379 Identities=29% Similarity=0.398 Sum_probs=324.7
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+++++..++.++..+...+..+..++....+.|.++|+++||+|+.|+.+.++|.+..+..
T Consensus 889 ~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~ 968 (1321)
T 4f4c_A 889 GLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIP 968 (1321)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred eeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHH
Confidence 45678999999999999999988888877777666667777888888999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSL--VSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (382)
.+...+......+...+.. +..+..++++++|++++..+..+.+.+ +.++.+......|+..+...+..+..+..+.
T Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 1048 (1321)
T 4f4c_A 969 HKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAG 1048 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555444333332 234455667788888888887665544 3333344444567788888899999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 160 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+|+.++++.+++........+.++..++|+|+||+|+||++ +.++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 1049 ~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1049 GIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp HHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred HHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 99999998766543333323334456789999999999865 34799999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 239 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
|+|++|+|.+||+|+++++.+++|++|++|||||+||+|||||||+||.+..+.++++++++++.+++++++.+||+|||
T Consensus 1129 ~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~Gld 1208 (1321)
T 4f4c_A 1129 YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE 1208 (1321)
T ss_dssp SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTC
T ss_pred ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCC
Confidence 99999999999999999999999999999999999999999999999954356899999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+|||+|.+|||||||||||||||++||+|||||||||+||++||+.|+++|++.+++||+|.
T Consensus 1209 T~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~ 1271 (1321)
T 4f4c_A 1209 TRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIV 1271 (1321)
T ss_dssp SEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEE
T ss_pred CEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999984
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=9.8e-72 Score=579.37 Aligned_cols=376 Identities=34% Similarity=0.513 Sum_probs=334.9
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.++.+.++|.+..++.
T Consensus 158 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 237 (582)
T 3b60_A 158 IMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKM 237 (582)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 45778999999999999999999888999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+......+. .+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++.+..+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 317 (582)
T 3b60_A 238 RLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666555544444332 3345567778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..+. ..+.+...+.|+++||+|+|+++++++|+|+||+|++||++||+||||||||||+++|+|+++|
T Consensus 318 i~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 318 LFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp HHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred HHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC
Confidence 99999866543211 1111223467999999999975335799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+.+++..++|++++||||+|.+|++|++||+.++.. .+.++++++++++.++++++++++|+|+||.+
T Consensus 396 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~ 474 (582)
T 3b60_A 396 DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTII 474 (582)
T ss_dssp SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBC
T ss_pred CCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC-CCCCHHHHHHHHHHcCCHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999861 13578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|.
T Consensus 475 ~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 534 (582)
T 3b60_A 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534 (582)
T ss_dssp CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
No 8
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-72 Score=584.84 Aligned_cols=375 Identities=31% Similarity=0.504 Sum_probs=336.1
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||+|+.+.++|.+..++.
T Consensus 170 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 249 (598)
T 3qf4_B 170 IMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESL 249 (598)
T ss_dssp HHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+......+...+..+ ..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..++.+..+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 329 (598)
T 3qf4_B 250 RKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAER 329 (598)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666665555444444333 23445677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++... +...+.++..++|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+++|
T Consensus 330 i~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 330 IFEILDLEEEKDD-PDAVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp HHHHTTSCCCCCC-SSCCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred HHHHHcCCCCCCC-CCCCCCCCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 9999987655322 1112223345689999999999754 4699999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+.+++.+++|++++||||+|++|++||+||+.++++ ..++++++++++.++++++++.+|+|+||.+
T Consensus 408 ~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 485 (598)
T 3qf4_B 408 DRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVL 485 (598)
T ss_dssp SEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST--TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC
T ss_pred CCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHhCCHHHHHhccccccchh
Confidence 99999999999999999999999999999999999999999999875 3567889999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|.
T Consensus 486 ~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 545 (598)
T 3qf4_B 486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSII 545 (598)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988999874
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-68 Score=598.06 Aligned_cols=377 Identities=32% Similarity=0.449 Sum_probs=336.2
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|.+..++.
T Consensus 201 ~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~ 280 (1284)
T 3g5u_A 201 IIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEA 280 (1284)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+......+...+.. +.....++++|+|++++..|.+++|.+++++.+......|+..+...+..++.+..+++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 360 (1284)
T 3g5u_A 281 KRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYE 360 (1284)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666665554444433333 234456778889999999999999999988888888888999999999999999999999
Q ss_pred HHHhhcCcccccCC-CCCCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 162 LFDLTKFKSKVIEK-PDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 162 i~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++++.+++.... ......+...+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 361 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 361 VFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp HHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred HHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 99999876543221 1112222345789999999999864 347999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||.|+.+++.+++|++|+||+|+|++|++||+|||.++.+ +.++++++++++.+++++++.++|+|+||
T Consensus 441 ~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 518 (1284)
T 3g5u_A 441 DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDT 518 (1284)
T ss_dssp CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGC
T ss_pred CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999875 46789999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+|++|.+||||||||||||||++++|+|||||||||+||+++++.+++.++++.+++|+|.
T Consensus 519 ~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 580 (1284)
T 3g5u_A 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIV 580 (1284)
T ss_dssp CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999989999874
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5e-65 Score=568.48 Aligned_cols=379 Identities=27% Similarity=0.433 Sum_probs=332.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++.++|.+++++++++|+++++..+..+.+++...+..+..+.....+.|.++|+++||+|+.++.+.++|.+..+..
T Consensus 844 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~ 923 (1284)
T 3g5u_A 844 IISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIP 923 (1284)
T ss_dssp HHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 35678899999999999999999888888888888888888899999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..........+.. ..++..++++++|++++..|.++.+.+++++.+......|+..+...+..+..+..+.+|
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 1003 (1284)
T 3g5u_A 924 YRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASH 1003 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555554444333333 334556778889999999999999999999988888888998888888888999999999
Q ss_pred HHHhhcCcccccCCC-CCCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 162 LFDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 162 i~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++++.+++..... .........+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 1004 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1004 IIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp HHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred HHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 999988765432211 111222345789999999999864 246999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+|+++++.+++|++++||||||.+|++||+||+.++.+....++++++++++.++++++++++|+||||
T Consensus 1084 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt 1163 (1284)
T 3g5u_A 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163 (1284)
T ss_dssp CCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGC
T ss_pred CCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999999998765557899999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|.
T Consensus 1164 ~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~ 1225 (1284)
T 3g5u_A 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV 1225 (1284)
T ss_dssp BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEE
T ss_pred ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999888999874
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9.5e-60 Score=450.74 Aligned_cols=231 Identities=38% Similarity=0.647 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCc
Q 016798 148 AYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGG 227 (382)
Q Consensus 148 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsG 227 (382)
....++.+..+++|++++++.+++........+.+...+.|+++||+|+|+++ .++|+||||+|++||++|||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCch
Confidence 45667788899999999987655432222222222335689999999999754 46999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChH
Q 016798 228 KSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307 (382)
Q Consensus 228 KSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~ 307 (382)
||||+++|+|+|+|++|+|.+||.++.+++..++|++|+||+|+|++|++||+|||.++.+ ..++++++++++.+++.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~--~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST--TCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc--cCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999999875 35688999999999999
Q ss_pred HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 308 ~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++..+|+||+|.+|++|.+||||||||++|||||+++|+|||||||||+||+.++..|++.|+++.+++|+|+
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~ 244 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIV 244 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999874
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.3e-52 Score=387.32 Aligned_cols=194 Identities=44% Similarity=0.712 Sum_probs=180.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
.+|+++||+|+|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 47999999999953234699999999999999999999999999999999999999999999999999988888888899
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+||+|+|.+|+.|++||+.++.+ ..+++++.++++.+++.++++.+|+|+++.+++.+.+||||||||++|||||+++
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCT--TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCccccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998753 3467788899999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||||||+||+.+++.+.+.|+++.+++|+|+
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tvii 199 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVII 199 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999877888874
No 13
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-51 Score=381.06 Aligned_cols=192 Identities=40% Similarity=0.644 Sum_probs=177.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++|
T Consensus 2 l~~~~l~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 789999999953 2469999999999999999999999999999999999999999999999999988777778889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
|||+|.+|+.|++||+.++.. ...+++++.++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 81 v~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EcCCCccccccHHHHHhhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998721 1346778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||||||||+||+.+++.+.+.|+++.+++|+|+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~ 193 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999877888874
No 14
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.1e-50 Score=377.50 Aligned_cols=193 Identities=39% Similarity=0.657 Sum_probs=178.7
Q ss_pred CcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 186 GDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
+.|+++||+|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4699999999997532 4699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||+|+|.+|+.|++||+.++.. ..+++++.++++.+++.+++..+|+|++|.+++.+.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCC--CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 999999999999999999998753 235678888999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+|++||||||||+||+.+++.+.+.|+++.+++|+|+
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tvii 209 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLII 209 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999999987888874
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7e-50 Score=377.26 Aligned_cols=194 Identities=39% Similarity=0.595 Sum_probs=177.0
Q ss_pred CcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 186 GDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
+.|+++||+|+|+++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 469999999999752 2469999999999999999999999999999999999999999999999999988887788889
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCH-HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDM-ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|+||+|+|.+|+.|++||+.++... .+. +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred EEEEecCCccccccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987532 223 5677788888999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|++||||||||+||+.++..+.+.|+++.+ ++|+|+
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tvii 212 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEE
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 99999999999999999999999999999864 778874
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-49 Score=386.51 Aligned_cols=193 Identities=25% Similarity=0.460 Sum_probs=180.7
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
.+.|+++||+|+|++++.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.+++...+|+.
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 45799999999997545679999999999999999999999999999999999998 89999999999999999999999
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||+|++.+|+.|++||+.+.. ...++++.++++.+++.+++++.|.+++|.++++|.+||||||||+||||||++
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~---~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNA---AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTC---CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCcccCccCHHHHhhhcc---ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998543 245788999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+|++||||||||+||+.++..+.+.|+++.+++|+|.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~ 209 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVIL 209 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEE
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999998877788774
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.6e-47 Score=352.65 Aligned_cols=180 Identities=27% Similarity=0.418 Sum_probs=162.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
+.|+++||+|+|++++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 36999999999974445799999999999999999999999999999999999999999999998 49
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|++|+|.+|+.|++||+.++.. .......++++.+++.++++.+|.++++.+++.+.+||||||||++|||||+++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEecCCcccCCCHHHHhhccCC---cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998753 234556677888899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHH-HHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~TvI~ 381 (382)
|+++|||||||+||+.+++.+.+. ++++.+++|+|+
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~ 185 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999999999999999999987 455556778774
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.2e-47 Score=352.41 Aligned_cols=179 Identities=28% Similarity=0.436 Sum_probs=160.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+|+|++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999974335799999999999999999999999999999999999999999999998 499
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
||+|+|.+|+.|++||+.++... ..+...++++.+++.+.+..+|.|++|.+++.+.+||||||||++|||||+++|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQL---EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCC---CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCcCCCcCHHHHhhCcccc---CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999987532 234556777888888889999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHH---HHhCCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVD---RLLGHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~---~~~~~~TvI~ 381 (382)
+++|||||||+||+.++..+.+.|. ++.+++|+|+
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tvii 184 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEE
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 9999999999999999999999984 4445778874
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.7e-47 Score=350.83 Aligned_cols=184 Identities=33% Similarity=0.466 Sum_probs=151.7
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH----
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL---- 261 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~---- 261 (382)
|+++||+|+|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997532 358999999999999999999999999999999999999999999999999999887654
Q ss_pred hcceEEecCCCccccc-cHHHHHcCCCCC---CCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGYRDLM---TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~---~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
|++|+||+|+|.+|+. |++||+.++... ...+. +++.++++.+++.+. .......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----------hhhCChhhCCHHHH
Confidence 3469999999999987 999999763110 01222 233444444444221 12445689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||++|||||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~ 201 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999999999853 788874
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.4e-46 Score=354.86 Aligned_cols=183 Identities=30% Similarity=0.440 Sum_probs=153.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC--CCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 264 (382)
-|+++||+|+|+++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 48999999999754 35999999999999999999999999999999999999999999999999984 2334567889
Q ss_pred eEEecCCC--ccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
||||+|+| .+|..|++||+.++......+. +++.++++.+++.+ .......+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHHHHHH
Confidence 99999998 4788899999987532222233 33455565555543 3334557999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~TvI~ 381 (382)
||||+.+|++||||||||+||+.++..+.+.|+++. + ++|+|+
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~ 199 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999999999999999999999999999999885 3 788874
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.6e-46 Score=363.15 Aligned_cols=185 Identities=32% Similarity=0.434 Sum_probs=156.8
Q ss_pred CcEEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---
Q 016798 186 GDVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS--- 260 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~--- 260 (382)
.-|+++||+++|+.+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997532 35899999999999999999999999999999999999999999999999999888765
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
+|++||||+|++.+|+. ||+||+.++......+. +++.++++.+++.++.+ ....+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-----------CCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHH
Confidence 47889999999999876 99999987532112232 34556666666654433 3457999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~ 219 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999853 778774
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-45 Score=342.13 Aligned_cols=186 Identities=24% Similarity=0.372 Sum_probs=153.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 265 (382)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |+.+
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4899999999975 369999999999999999999999999999999999999999999999999988776655 4569
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+||+|++.+|+. |++||+.++... ..+.++..+.+ .+.++.++ |++........+||||||||++|||||+.
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYN-RKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTT-CCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEecCCccCCCCcHHHHHHHhhhc-CCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999987 999999886311 11111222111 22334333 34455566778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|++||||||||+||+.+++.+.+.|+++. +++|+|+
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~ 194 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999986 5788874
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.2e-45 Score=339.00 Aligned_cols=182 Identities=31% Similarity=0.353 Sum_probs=151.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hh-
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR- 262 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r- 262 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 3899999999965 46999999999999999999999999999999999999999999999999998776543 34
Q ss_pred cceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
++++||+|++.+|+. |++||+.++......+ .+++.++++.+++. ........+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-----------DKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHHH
Confidence 679999999999865 9999998642111112 23344455554443 3334456799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~ 195 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVM 195 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999999985 4678774
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.6e-45 Score=345.72 Aligned_cols=182 Identities=34% Similarity=0.431 Sum_probs=152.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC--CCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 264 (382)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4999999999964 36999999999999999999999999999999999999999999999999985 3345567888
Q ss_pred eEEecCCCccccc-cHHHHHcCCC-CCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRD-LMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~-~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
|+||+|++.+|+. |++||+.++. .....+ .+++.++++.+++.++ ......+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK-----------AHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHHH
Confidence 9999999999876 9999998742 111122 2344555555555433 344557999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~ 214 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 214 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999985 4678774
No 25
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-45 Score=343.31 Aligned_cols=182 Identities=27% Similarity=0.365 Sum_probs=153.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 56999999999964 469999999999999999999999999999999999999999999999999876 456678899
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+||+|++.+|+. |++||+.++......+. +++.++++.+++.++. .....+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999877 99999986421111122 3455566666554433 3345799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiii 201 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999986 4678774
No 26
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.3e-45 Score=342.11 Aligned_cols=182 Identities=21% Similarity=0.252 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 265 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+.. .+|+++
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999876643 456789
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCC--CC-----------CC-H---HHHHHHHHHcChHHHHHhCCCCcccccCCCCCC
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLM--TK-----------ID-M---ERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~--~~-----------~~-~---~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~ 327 (382)
+||+|++.+|+ .|++||+.++... .. .+ . +++.++++.+ |++........+
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~ 153 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL-----------KLSHLYDRKAGE 153 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT-----------TCGGGTTSBGGG
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc-----------CCchhhCCCchh
Confidence 99999999986 4999999875321 11 11 1 2233333333 455555666789
Q ss_pred CChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 328 lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 208 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 208 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999999999999854 678774
No 27
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.6e-45 Score=344.02 Aligned_cols=182 Identities=27% Similarity=0.362 Sum_probs=156.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5899999999975 46999999999999999999999999999999999999999999999999999999988899999
Q ss_pred EecCCCcc-ccccHHHHHcCCCCCC--CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 267 LVSQDITL-FSGTVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|++|++.+ |+.|++||+.++.... ....+++.++++.+++.++. .....+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA-----------QRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT-----------TSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHHHHHHHHHh
Confidence 99999987 5679999998764211 12245666777776654332 2344689999999999999999
Q ss_pred C------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 344 Q------NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 344 ~------~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
. +|++||||||||+||+.++..+.+.|+++.+ ++|+|+
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~ 203 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEE
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9 9999999999999999999999999999853 357763
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.3e-45 Score=341.45 Aligned_cols=180 Identities=27% Similarity=0.421 Sum_probs=155.0
Q ss_pred EEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
|+++||+|+|+.+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 78999999997222 3699999999999999999999999999999999999999999999999998642 67888
Q ss_pred eEEecCCC--ccccccHHHHHcCCCCC---CCCCHHHHHHHHHHcChH--HHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 265 VGLVSQDI--TLFSGTVAENIGYRDLM---TKIDMERVEHTARTANAD--EFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 265 i~~v~Q~~--~lf~~ti~eNi~~~~~~---~~~~~~~~~~~~~~~~l~--~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
++||+|+| .++..|++||+.++... .....+++.++++.+++. ++.++.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 46778999999876321 112356778888888887 6655544 689999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||+.+|++||||||||+||+.++..+.+.|+++. +++|+|+
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~ 193 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL 193 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999999999999985 4778774
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.7e-45 Score=341.63 Aligned_cols=182 Identities=32% Similarity=0.411 Sum_probs=153.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC----------C
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----------I 256 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~----------~ 256 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4899999999964 369999999999999999999999999999999999999999999999999861 3
Q ss_pred CH---HHHhcceEEecCCCccccc-cHHHHHcCCC-CCCCCC----HHHHHHHHHHcChHHH-HHhCCCCcccccCCCCC
Q 016798 257 RL---DSLRRHVGLVSQDITLFSG-TVAENIGYRD-LMTKID----MERVEHTARTANADEF-VRTLPQGYNTHIGPRGS 326 (382)
Q Consensus 257 ~~---~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~-~~~~~~----~~~~~~~~~~~~l~~~-i~~lp~Gldt~vge~G~ 326 (382)
+. ..+|++++||+|++.+|+. |++||+.++. .....+ .+++.++++.+++.++ .++ ...
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-----------YPV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS-----------CGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC-----------Ccc
Confidence 43 3457789999999999876 9999998742 111122 2355667777777665 433 347
Q ss_pred CCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~ 208 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV 208 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 8999999999999999999999999999999999999999999998853 678774
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-45 Score=331.78 Aligned_cols=176 Identities=21% Similarity=0.353 Sum_probs=150.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.+
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 46999999999964 5999999999999999999999999999999999999999999999999885 357889
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC--CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+||+|+|.+|+. |++||+.++.... ..+.+++.++++..+ ++.. .....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-----------VLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-----------CCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcC-----------CCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999976 9999998742100 122455566655554 4444 556789999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+.+|+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiii 188 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEE
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999886 3677764
No 31
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-44 Score=351.71 Aligned_cols=182 Identities=30% Similarity=0.398 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC--CCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 264 (382)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+....+++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999964 469999999999999999999999999999999999999999999999999832 122345678
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
||||+|++.+|+. |++||+.|+......+ .+++.++++.+++.++.++ ...+||||||||++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR-----------YPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTS-----------CGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999999965 9999999875322222 2455666776666554443 4479999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
|||+.+|++||||||||+||+.+...+.+.++++. .+.|+|+
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~ 194 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVF 194 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999998777653 3678764
No 32
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.2e-45 Score=343.79 Aligned_cols=180 Identities=24% Similarity=0.310 Sum_probs=150.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC--CCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 264 (382)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999964 36999999999999999999999999999999999999999999999999987 6777788899
Q ss_pred eEEecCCCcc-ccc--cHHHHHcCCCCC-----CCCCH---HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 265 VGLVSQDITL-FSG--TVAENIGYRDLM-----TKIDM---ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 265 i~~v~Q~~~l-f~~--ti~eNi~~~~~~-----~~~~~---~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
|+||+|++.+ |.. |++||+.++... ....+ +++.++++.+++. ........+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-----------AKAQQYIGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-----------GGTTSBGGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHH
Confidence 9999999875 544 999999886311 00122 2344555555443 334455679999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCce
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTV 379 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~Tv 379 (382)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv 214 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTL 214 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEE
Confidence 999999999999999999999999999999999999998854 6787
No 33
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.4e-44 Score=353.96 Aligned_cols=180 Identities=32% Similarity=0.498 Sum_probs=154.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999974 3699999999999999999999999999999999999999999999999999887765 46799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. ||+||+.|+......+. +++.++++.+++.++.+ ....+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------CCGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhHCCHHHHHHHHHHHH
Confidence 99999999976 99999988632222333 34556666666654443 3457999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~ 189 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999853 678764
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.5e-44 Score=350.01 Aligned_cols=182 Identities=30% Similarity=0.471 Sum_probs=154.2
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++|
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 469999999999422 469999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+||+|++.+|+. |++||+.|+......+ ++++.++++.+++.++.++. ..+||||||||++|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-----------~~~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRF-----------PHELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC-----------cccCCHHHHHHHHHHH
Confidence 999999999976 9999998753211122 24566677777665554443 4799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999998853 678764
No 35
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.4e-44 Score=342.09 Aligned_cols=176 Identities=27% Similarity=0.436 Sum_probs=144.0
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
.+.|+++||+|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 3469999999863 3599999999999999999999999999999999999999999999987 4
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++|++|++.+|++|++||+. +.. .....+.++++..++.+++..+|.++++.+++.+.+||||||||++|||||++
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~ 176 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 176 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc---cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999998 532 23455667788889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHH-HHHhCCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~TvI~ 381 (382)
+|+++|||||||+||+.++..+.+.+ +++.+++|+|+
T Consensus 177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tvii 214 (290)
T 2bbs_A 177 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214 (290)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999874 45556778774
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-44 Score=349.72 Aligned_cols=180 Identities=35% Similarity=0.514 Sum_probs=154.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 3899999999964 3699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. |++||+.|+......+ ++++.++++.+++.++.++. ..+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK-----------PTQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999976 9999999864322222 24566777777766554444 47999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999998753 677764
No 37
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-44 Score=333.74 Aligned_cols=176 Identities=26% Similarity=0.395 Sum_probs=147.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++ +|+|+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..|++|+|
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 678999999953 59999999999 999999999999999999999999999999999999987643 34778999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCC--CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKI--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+|++.+|+. |++||+.++...... +.+++.++++.+++.+ .......+||||||||++|||||+.
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999977 999999986432111 1234455555555433 3334457999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+++||||||++||+.+++.+.+.|+++.+ ++|+|+
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~ 182 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999853 778874
No 38
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9e-44 Score=348.38 Aligned_cols=180 Identities=33% Similarity=0.524 Sum_probs=148.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. |++||+.|+......+. +++.++++.+++.++.++. ..+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY-----------PAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSC-----------TTTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 99999998753222333 3456667776665554443 47999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 197 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 197 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999998754 677764
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.1e-44 Score=350.00 Aligned_cols=182 Identities=32% Similarity=0.462 Sum_probs=153.8
Q ss_pred cEEEEeEEEEeCCCCCC--ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC---HHHH
Q 016798 187 DVKFCNISFKYADNMPL--VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~--~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~ 261 (382)
.|+++||+++|++ .. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 3899999999964 46 999999999999999999999999999999999999999999999999986521 2235
Q ss_pred hcceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+++|+||+|++.+|+. |++||+.|+......+ .+++.++++.+++.++.++. ..+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-----------PRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHH
Confidence 7789999999999976 9999999864322223 23456677777665554443 479999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 196 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999998853 678774
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8e-44 Score=331.65 Aligned_cols=176 Identities=24% Similarity=0.309 Sum_probs=154.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 3889999985 4899999999999999999999999999999999999999 99999999998888888889999
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|++|++.+|.. |++||+.++... ..+++++.++++.+++.++. .....+||||||||++|||||+.+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHD-KTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSS-TTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCccCCCCcHHHHHHHhhcc-CCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999998865 999999987421 12366777777777765443 345679999999999999999999
Q ss_pred CC-------EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 346 SS-------VLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 346 ~~-------ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|+ +|||||||++||+.+++.+.+.|+++. +++|+|+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii 188 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVM 188 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99 999999999999999999999999985 4778774
No 41
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.4e-44 Score=349.37 Aligned_cols=180 Identities=39% Similarity=0.555 Sum_probs=152.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 3899999999964 3699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. |++||+.|+......+. +++.++++.+++.++.++ ...+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-----------YPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999976 99999987532111222 345566666665544333 447999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999998854 678764
No 42
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.7e-44 Score=348.41 Aligned_cols=178 Identities=34% Similarity=0.526 Sum_probs=152.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++|+|
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 689999999964 4 9999999999999999999999999999999999999999999999999987554 4678999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCC-CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|+|++.+|+. |++||+.|+..... ..++++.++++.+++.++.++ ...+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999976 99999987531100 122667777777776555444 3479999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~ 183 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999853 678764
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.4e-44 Score=334.69 Aligned_cols=181 Identities=25% Similarity=0.345 Sum_probs=143.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC--CCCCCceEEEcCEeCCCCCHHHH-hcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~~ 264 (382)
|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |..
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 889999999964 4699999999999999999999999999999999999 88999999999999988776655 456
Q ss_pred eEEecCCCccccc-cHHHHHcCCCC---CCCCC----HHHHHHHHHHcCh-HHHHHhCCCCcccccCCCCCC-CChHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDL---MTKID----MERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSS-LSGGQRQ 334 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~---~~~~~----~~~~~~~~~~~~l-~~~i~~lp~Gldt~vge~G~~-lSgGq~Q 334 (382)
++|++|+|.+|+. |++||+.++.. ....+ .+++.++++.+++ .++. .....+ |||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-----------SRYLNEGFSGGEKK 150 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-----------GSBTTCC----HHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-----------cCCcccCCCHHHHH
Confidence 9999999999976 99999976421 00011 1234444444444 1222 222345 9999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++|||||+++|++||||||||+||+.+++.+.+.|+++.+ ++|+|+
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 198 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALV 198 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999854 678764
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.4e-43 Score=347.39 Aligned_cols=180 Identities=28% Similarity=0.479 Sum_probs=151.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC------CCHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN------IRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~------~~~~~ 260 (382)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 3889999999964 369999999999999999999999999999999999999999999999999865 443
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
.+++|+||+|++.+|+. |++||+.|+......+. +++.++++.+++.++.++ ...+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------CcccCCHHHHHH
Confidence 36789999999999965 99999987532111222 345666666666554443 347999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 195 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999998753 677764
No 45
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.5e-43 Score=327.54 Aligned_cols=170 Identities=30% Similarity=0.390 Sum_probs=142.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 38999999999722 4699999999999999999999999999999999999999999998 356899
Q ss_pred EecCCCccc-cccHHHHHcCCCCC--------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITLF-SGTVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~lf-~~ti~eNi~~~~~~--------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
||+|++.+| ..|++||+.++... .....+++.++++.+++.++ ......+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL-----------AKREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHH-----------hcCChhhCCHHHHHHHH
Confidence 999999988 56999999886311 00112345566666665443 33446799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~ 184 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF 184 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999864 678774
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.7e-43 Score=329.63 Aligned_cols=176 Identities=20% Similarity=0.312 Sum_probs=148.0
Q ss_pred EEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
|+++|++++|+++ ..++|+|+||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1369999999999 9999999999999999999999999 9999999999998654 33 7789
Q ss_pred E-EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 G-LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~-~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+ |++|+|.+ ..|++||+.++......+++++.++++..++.+ ........+||||||||++|||||+.
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 9 99999999 889999998753211234566666666654430 44455678999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+|++|||||||++||+.+++.+.+.|+++.+ |+|+
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tvii 180 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGIL 180 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEE
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEE
Confidence 9999999999999999999999999998854 7764
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.2e-43 Score=329.13 Aligned_cols=186 Identities=21% Similarity=0.257 Sum_probs=146.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC--CCCCCceEEEcCEeCCCCCHHHH-hc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 263 (382)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... +.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999964 4699999999999999999999999999999999999 57899999999999987776655 44
Q ss_pred ceEEecCCCccccc-cHHHHHcCCC-------CCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccC-CCCC-CCChHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRD-------LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG-PRGS-SLSGGQR 333 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~-------~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vg-e~G~-~lSgGq~ 333 (382)
.++||+|+|.+|+. |++||+.+.. .....+.++..+ .+.+.++.+ |+++.+. .... +||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHH
Confidence 69999999999876 9999986531 000112222111 122233332 4433222 2233 5999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++|||||+.+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii 219 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFII 219 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999998854 678764
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.7e-34 Score=292.64 Aligned_cols=169 Identities=24% Similarity=0.342 Sum_probs=138.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ..++
T Consensus 269 ~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~ 333 (538)
T 3ozx_A 269 KMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILS 333 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEE
T ss_pred eEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeE
Confidence 5889999999964 368888999999999999999999999999999999999999998764 3589
Q ss_pred EecCCCcc-ccccHHHHHcCCCCCC-CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITL-FSGTVAENIGYRDLMT-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||++.. |..|++||+.+..... ....+.+.++++..++.+ .......+||||||||++|||||+.
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-----------LLESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-----------CTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999874 5779999997532111 112234445555555433 3344567999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|++|||||||++||+.+...+.+.|+++. .+.|+|+
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~ 441 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999985 3677763
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.2e-34 Score=297.61 Aligned_cols=167 Identities=26% Similarity=0.345 Sum_probs=136.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+++
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEE
Confidence 5899999999964 3689999999999999999999999999999999999999999975 24699
Q ss_pred EecCCCcc-ccccHHHHHcCC-CCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITL-FSGTVAENIGYR-DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||++.. ++.|+.||+... ... ....+.+.++++..++ +........+||||||||++|||||+.
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~-~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSK-LNSNFYKTELLKPLGI-----------IDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHH-HHCHHHHHHTHHHHTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEecCccCCCCCcHHHHHHhhhccC-CCHHHHHHHHHHHcCC-----------chHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999976 567999998643 110 0012334444444443 223334457999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|++|||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~ 527 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999974 4778774
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.4e-34 Score=295.33 Aligned_cols=167 Identities=26% Similarity=0.339 Sum_probs=135.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++|+++.|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..++
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEE
Confidence 5899999999964 3689999999999999999999999999999999999999999985 23699
Q ss_pred EecCCCcc-ccccHHHHHcCC-CCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITL-FSGTVAENIGYR-DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||++.. +..|+.||+... ... ....+.+.++++..+ +.........+||||||||++|||||+.
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASK-LNSNFYKTELLKPLG-----------IIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHH-HTCHHHHHHTTTTTT-----------CGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEecCCcCCCCCcHHHHHHhhhccC-CCHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999976 567999998642 100 011233333333333 3333445567999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|++|||||||++||..+...+.+.|+++. .+.|+|+
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~ 457 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 457 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999875 3778774
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.7e-34 Score=298.10 Aligned_cols=177 Identities=26% Similarity=0.334 Sum_probs=138.3
Q ss_pred cEEE--------EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE---------EEc
Q 016798 187 DVKF--------CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI---------LVD 249 (382)
Q Consensus 187 ~i~~--------~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i---------~~~ 249 (382)
.|++ +||+++|++. ..+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 4788 8999999753 24899999 999999999999999999999999999999999996 345
Q ss_pred CEeCCCCCHHH--HhcceEEecCCCc----cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCC
Q 016798 250 DHDVQNIRLDS--LRRHVGLVSQDIT----LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (382)
Q Consensus 250 g~~~~~~~~~~--~r~~i~~v~Q~~~----lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge 323 (382)
|.++.+..... .+..+++++|... ++.+|++||+.... ..+++.++++..++.+.. ..
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~-----~~~~~~~~L~~lgL~~~~-----------~~ 224 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD-----EVGKFEEVVKELELENVL-----------DR 224 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC-----CSSCHHHHHHHTTCTTGG-----------GS
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH-----HHHHHHHHHHHcCCCchh-----------CC
Confidence 65543221111 1345889988754 34569999996422 123455667666654332 23
Q ss_pred CCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
...+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIi 283 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3468999999999999999999999999999999999999999999998854 677764
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.7e-33 Score=302.41 Aligned_cols=173 Identities=27% Similarity=0.393 Sum_probs=128.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++|+|+++..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 49999999999754457999999999999999999999999999999999999999999999862 1366
Q ss_pred EecCCCcc-----ccccHH-------------------------------------------------------------
Q 016798 267 LVSQDITL-----FSGTVA------------------------------------------------------------- 280 (382)
Q Consensus 267 ~v~Q~~~l-----f~~ti~------------------------------------------------------------- 280 (382)
|++|++.. ++.|++
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 66665421 112333
Q ss_pred -----HHHcCCCC---------------------------------------CCCCCHHHHHHHHHHcChHHHHHhCCCC
Q 016798 281 -----ENIGYRDL---------------------------------------MTKIDMERVEHTARTANADEFVRTLPQG 316 (382)
Q Consensus 281 -----eNi~~~~~---------------------------------------~~~~~~~~~~~~~~~~~l~~~i~~lp~G 316 (382)
||+.++.. ......+++.+.++..++.+..
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~------ 893 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI------ 893 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH------
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh------
Confidence 33332210 0001123344444444442211
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 317 ldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+
T Consensus 894 ---~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIi 953 (986)
T 2iw3_A 894 ---VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVII 953 (986)
T ss_dssp ---HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEE
T ss_pred ---hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEE
Confidence 012345799999999999999999999999999999999999999999999876 457764
No 53
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=7.3e-37 Score=291.67 Aligned_cols=196 Identities=16% Similarity=0.213 Sum_probs=161.1
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeC
Q 016798 119 SGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYA 198 (382)
Q Consensus 119 ~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 198 (382)
..+..+-+.+.+|+.+... ..|+..++..+..++.+..+..|+.++++.+++...... ..+...+.|+++||+|+|+
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~y~ 112 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELITF 112 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEEcC
Confidence 3445566778888877666 479999999999999999999999999876544221111 1111123589999999997
Q ss_pred CCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccccc
Q 016798 199 DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGT 278 (382)
Q Consensus 199 ~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t 278 (382)
.++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| +++++|++++|.+|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 36999999999999999999999999999999999999 8998 45789999999999
Q ss_pred HHH-HHcCCCCCCCCCHHHHHHHHHHcChHHHHHh-CCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC
Q 016798 279 VAE-NIGYRDLMTKIDMERVEHTARTANADEFVRT-LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (382)
Q Consensus 279 i~e-Ni~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts 356 (382)
++| |+.++. +.++ +++++++. +|+|+| |.+|||||||| |||++++|+||| ||
T Consensus 169 i~~~ni~~~~---~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 169 LADTRAALVD---DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GTTCSCEEEE---EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred HHHHhhccCc---cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 998 998863 2232 34567777 899998 78999999999 999999999999 99
Q ss_pred CCCHHHHHHHH
Q 016798 357 ALDSRSELLVR 367 (382)
Q Consensus 357 ~LD~~~~~~i~ 367 (382)
+||+.++..+.
T Consensus 223 ~LD~~~~~~i~ 233 (305)
T 2v9p_A 223 NIDVQAEDRYL 233 (305)
T ss_dssp SSCSTTCGGGG
T ss_pred CCCHHHHHHHH
Confidence 99999998776
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=6.2e-34 Score=292.20 Aligned_cols=173 Identities=28% Similarity=0.358 Sum_probs=133.5
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE---------EEcCEeCCCCCHHH-
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI---------LVDDHDVQNIRLDS- 260 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i---------~~~g~~~~~~~~~~- 260 (382)
+||+++|++. ..+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.......
T Consensus 25 ~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 5899999753 25899999 999999999999999999999999999999999996 34565443211111
Q ss_pred -HhcceEEecCCCccc----cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 -LRRHVGLVSQDITLF----SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 -~r~~i~~v~Q~~~lf----~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
.+..+++++|+...+ .+|++||+.... ..+++.++++..++.+. ......+||||||||
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-----~~~~~~~~l~~lgl~~~-----------~~~~~~~LSgGekQR 166 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----ETGKLEEVVKALELENV-----------LEREIQHLSGGELQR 166 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-----SSSCHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHH
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-----HHHHHHHHHHHcCCChh-----------hhCChhhCCHHHHHH
Confidence 124588999976543 358999985321 12345566666665322 233457899999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+
T Consensus 167 v~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999998754 677764
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-32 Score=280.86 Aligned_cols=166 Identities=25% Similarity=0.367 Sum_probs=132.6
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCC-----CEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAG-----ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G-----~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++++|+|++. ..+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 5678899753 34799999999999 8899999999999999999999999999972 11 3469
Q ss_pred EEecCCCc-cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++|++. .|+.|++||+.........+.+...++++..++.+ .......+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-----------IIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-----------TSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999976 46789999985322111123445555666655433 2334457999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|++|||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvii 523 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999874 3778774
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=3.9e-30 Score=276.33 Aligned_cols=164 Identities=26% Similarity=0.381 Sum_probs=133.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..+...|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +..+
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 46888899999974 369999999999999999999999999999999996 554 4544321 1247
Q ss_pred EEecCCC-ccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcCh-HHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 266 GLVSQDI-TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 266 ~~v~Q~~-~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l-~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+|++|++ .++ ..|++||+.+.. ... .+++.++++..++ .+..++. ..+||||||||++|||||
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~--~~~-~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESG--VGT-KEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAV 563 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTC--SSC-HHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHH
T ss_pred EEEcccccccccCCcHHHHHHHhh--cCH-HHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 8999986 444 459999997621 122 6778888888888 4555443 368999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.|++ .++|+|+
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIi 600 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSIT 600 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEE
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEE
Confidence 999999999999999999999999999988 5778774
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.8e-32 Score=278.55 Aligned_cols=171 Identities=23% Similarity=0.312 Sum_probs=131.6
Q ss_pred eEEEEeCCCCCCccceeeEEee-CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE-----------EEcCEeCCCCCHH
Q 016798 192 NISFKYADNMPLVLDQLNLHIR-AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-----------LVDDHDVQNIRLD 259 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~-~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i-----------~~~g~~~~~~~~~ 259 (382)
+++++|+.+ .++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 4 ~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 4 EVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 577899865 4566667666 899999999999999999999999999999998 5677665432111
Q ss_pred HH------hcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SL------RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~------r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.. ...+.+++|.+.++.+|+++++.... ..+.+.++++..++.+. ......+||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-----~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~ 144 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKID-----ERGKKDEVKELLNMTNL-----------WNKDANILSGGGL 144 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC-----CSSCHHHHHHHTTCGGG-----------TTSBGGGCCHHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcch-----hHHHHHHHHHHcCCchh-----------hcCChhhCCHHHH
Confidence 11 22345566666677889999875321 12345566666665432 2234478999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++|||||+.+|++||||||||+||+.+...+.+.|+++.+++|+|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~ 192 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999987888874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-31 Score=274.66 Aligned_cols=174 Identities=27% Similarity=0.365 Sum_probs=125.5
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE-----------EEcCEeCCCCCHHH
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-----------LVDDHDVQNIRLDS 260 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i-----------~~~g~~~~~~~~~~ 260 (382)
|++++|+.+. ..|++++ .+++||++||+||||||||||+|+|+|+++|++|+| .+.|.++..+....
T Consensus 82 ~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 4588997643 4677777 689999999999999999999999999999999998 23333332221222
Q ss_pred Hhcce--EEecCCCcc----ccc---cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 261 LRRHV--GLVSQDITL----FSG---TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 261 ~r~~i--~~v~Q~~~l----f~~---ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
+.+.+ .+.+|.... +.+ ++.+++.... ....+++.++++..++.+..+ ....+||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG 225 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM---EKSPEDVKRYIKILQLENVLK-----------RDIEKLSGG 225 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC---CSCHHHHHHHHHHHTCTGGGG-----------SCTTTCCHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh---hhHHHHHHHHHHHcCCcchhC-----------CChHHCCHH
Confidence 22332 233333221 111 5666654322 124567777777776644433 344799999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 276 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999865 677763
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.7e-30 Score=273.85 Aligned_cols=171 Identities=23% Similarity=0.360 Sum_probs=105.1
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHH---------------------HHHhhCCCCC-------CceEEEcCEeC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLA---------------------KLLLRLYDPL-------SGCILVDDHDV 253 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~---------------------~ll~g~~~~~-------~G~i~~~g~~~ 253 (382)
..+|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8999999998 55666666554
Q ss_pred CCCCHHHHhcceEEecCCCccc--------------------cccHHHHHcCCCCCCCCC-HHH-----HHHHHHHcChH
Q 016798 254 QNIRLDSLRRHVGLVSQDITLF--------------------SGTVAENIGYRDLMTKID-MER-----VEHTARTANAD 307 (382)
Q Consensus 254 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~ti~eNi~~~~~~~~~~-~~~-----~~~~~~~~~l~ 307 (382)
.. ..++.+++|+|.+.++ ..|++||+.+........ +.+ ..++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 2245677777765432 358999997742110000 011 11111111
Q ss_pred HHHHhCCCCcccc-cCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 308 EFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 308 ~~i~~lp~Gldt~-vge~G~~lSgGq~QrialaRall~~~~--ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+.++.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. ++.|+|+
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~ 259 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 259 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 123332 33322 344567899999999999999999998 999999999999999999999999885 4678764
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=3.6e-29 Score=263.64 Aligned_cols=174 Identities=25% Similarity=0.355 Sum_probs=117.5
Q ss_pred EEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh----------------------hCCCCCCceEEEcCE
Q 016798 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL----------------------RLYDPLSGCILVDDH 251 (382)
Q Consensus 194 ~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~----------------------g~~~~~~G~i~~~g~ 251 (382)
.+.+.+....+|+||||+|++||++||+||||||||||+++|+ |+. +.+|.|.+++.
T Consensus 327 ~~~~~~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~ 405 (670)
T 3ux8_A 327 WLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQS 405 (670)
T ss_dssp EEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSS
T ss_pred ceeecCccccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccc
Confidence 3444333346899999999999999999999999999998754 233 33468888888
Q ss_pred eCCCCCHHHHhc-----------------------------------------ceEEecCCCccc---------------
Q 016798 252 DVQNIRLDSLRR-----------------------------------------HVGLVSQDITLF--------------- 275 (382)
Q Consensus 252 ~~~~~~~~~~r~-----------------------------------------~i~~v~Q~~~lf--------------- 275 (382)
++...+....+. ..+++.|+..++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~ 485 (670)
T 3ux8_A 406 PIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRY 485 (670)
T ss_dssp CSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCB
T ss_pred cCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCccc
Confidence 876543211110 123333332222
Q ss_pred ------------------cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHHHH
Q 016798 276 ------------------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 276 ------------------~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Qri 336 (382)
..|++||+.+..... ..++..+.+..+ |+. ...+....+||||||||+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~~--~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv 552 (670)
T 3ux8_A 486 NRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIKRKLETLYDV-----------GLGYMKLGQPATTLSGGEAQRV 552 (670)
T ss_dssp CHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTCH--HHHHHHHHHHHT-----------TCTTSBTTCCGGGCCHHHHHHH
T ss_pred ChhhhheeecCCCHHHHhhCCHHHHHHHHHHhh--hHHHHHHHHHHc-----------CCchhhccCCchhCCHHHHHHH
Confidence 347888887653210 112222333322 232 234566789999999999
Q ss_pred HHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 337 AIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 337 alaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|||||+.+| ++|||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 553 ~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 553 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999887 5999999999999999999999999986 4678774
No 61
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=2.9e-28 Score=242.35 Aligned_cols=178 Identities=19% Similarity=0.249 Sum_probs=128.2
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC--------------------------------------CCCc
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--------------------------------------PLSG 244 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--------------------------------------~~~G 244 (382)
..++++||++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 999999999999999999977764 4478
Q ss_pred eEEEcCEeCCCCCHHHHhcc-eEEecCCCccccccHHHHHcCCCCCCCCCHH-------HHHHH----------------
Q 016798 245 CILVDDHDVQNIRLDSLRRH-VGLVSQDITLFSGTVAENIGYRDLMTKIDME-------RVEHT---------------- 300 (382)
Q Consensus 245 ~i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~-------~~~~~---------------- 300 (382)
++.+||.++...+..++.+. +++++|++.++-.+..++..+.+......+. ++.++
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 89999999976667777766 8999999998766655444332211000000 00000
Q ss_pred ---------------HHH-----------------cChHHHHHhC--C----------------CCccc---ccCCCCCC
Q 016798 301 ---------------ART-----------------ANADEFVRTL--P----------------QGYNT---HIGPRGSS 327 (382)
Q Consensus 301 ---------------~~~-----------------~~l~~~i~~l--p----------------~Gldt---~vge~G~~ 327 (382)
+.. ..+.+.+..+ | .|++. .+..++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000 0011222222 1 12222 34444444
Q ss_pred --------CChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 328 --------LSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 328 --------lSgGq~QrialaRall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||||||++|||+++.+| ++|||||||++||+.+...+.+.|+++.+++|+|.
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~ 351 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLV 351 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 8999999999999999999 99999999999999999999999999987888873
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.5e-32 Score=271.27 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=123.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-e-EEEcCEeCCCCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-C-ILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~-i~~~g~~~~~~~~~~~r~~ 264 (382)
-++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |.+|| + .|+.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 466667776663 79999999999999999999999999999999999999 9 99998 1 3778
Q ss_pred eEEecCCCcccc----ccHHHHHcCCCCC-CCC-CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDITLFS----GTVAENIGYRDLM-TKI-DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~~lf~----~ti~eNi~~~~~~-~~~-~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++++||++.+|. .|++||+ ++... ... ..+.+..+++.+ |++.... ..+||||||||+++
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHH
Confidence 999999996543 4899999 65421 110 111122222222 4444432 67999999999999
Q ss_pred HHH--ccCCCCE----EEEeC-cCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 339 ARA--LYQNSSV----LILDE-ATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 339 aRa--ll~~~~i----lilDE-pts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
||| |+.+|++ +|||| ||++||+. ...+.+.++++ ++|+|
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tvi 292 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIM 292 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEE
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEE
Confidence 999 9999999 99999 99999999 67777777665 44544
No 63
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=2.1e-29 Score=228.24 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=95.5
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +...++++++|+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------HHH
Confidence 588985 89999999999999999999999999 999999953 33321 2234577899999998 566
Q ss_pred H-cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHH
Q 016798 283 I-GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (382)
Q Consensus 283 i-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~ 361 (382)
+ .++.+. .+.+........+.++++. |+ |||||++|||||+.+|++|||||||++
T Consensus 79 l~~~~~~~----~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~---- 134 (208)
T 3b85_A 79 IDPYLRPL----HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT---- 134 (208)
T ss_dssp -CTTTHHH----HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred HHHHHHHH----HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence 6 332100 0000000000112223322 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcee
Q 016798 362 SELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 362 ~~~~i~~~l~~~~~~~TvI 380 (382)
+...+.+.|+++.+++|+|
T Consensus 135 ~~~~l~~~l~~l~~g~tii 153 (208)
T 3b85_A 135 TPAQMKMFLTRLGFGSKMV 153 (208)
T ss_dssp CHHHHHHHHTTBCTTCEEE
T ss_pred cHHHHHHHHHHhcCCCEEE
Confidence 8888999998874466665
No 64
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=1.1e-26 Score=249.34 Aligned_cols=167 Identities=26% Similarity=0.393 Sum_probs=115.2
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHH---------HHHhhCCCCCC------c------eEEEcCEeCCCCCH---
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLA---------KLLLRLYDPLS------G------CILVDDHDVQNIRL--- 258 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~---------~ll~g~~~~~~------G------~i~~~g~~~~~~~~--- 258 (382)
..|+||||+|++|++++|+|+||||||||+ +++.+...+.. | .+.++..++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 34444443332 3 24455544432110
Q ss_pred H-------H-------------------------------HhcceEEecCCCcccc------------------------
Q 016798 259 D-------S-------------------------------LRRHVGLVSQDITLFS------------------------ 276 (382)
Q Consensus 259 ~-------~-------------------------------~r~~i~~v~Q~~~lf~------------------------ 276 (382)
. . -++..|+++|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 0 0123577777776654
Q ss_pred ---------ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC-
Q 016798 277 ---------GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS- 346 (382)
Q Consensus 277 ---------~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~- 346 (382)
.|+.|++.+.... ...++..++++.+++ |+ ..++..+.+||||||||++|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~--~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI--PSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC--HHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc--hhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCC
Confidence 2455555443211 011233333444433 22 2468889999999999999999999876
Q ss_pred --CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 347 --SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 347 --~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
++|||||||++||+.+++.+++.|+++. +++|+|.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7999999999999999999999999885 4788874
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=7.7e-26 Score=240.89 Aligned_cols=181 Identities=24% Similarity=0.371 Sum_probs=123.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHH-HhhCC-------CC----------------
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKL-LLRLY-------DP---------------- 241 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~l-l~g~~-------~~---------------- 241 (382)
..|+++|+++ ..|+||||+|++||++||+|+||||||||++. |+|++ +|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999986 16999999999999999999999999999996 76654 22
Q ss_pred --CCc-------eEEEcCEeCCCCCH----------HHHhcce---------EEecC----------------------C
Q 016798 242 --LSG-------CILVDDHDVQNIRL----------DSLRRHV---------GLVSQ----------------------D 271 (382)
Q Consensus 242 --~~G-------~i~~~g~~~~~~~~----------~~~r~~i---------~~v~Q----------------------~ 271 (382)
.+| .|.++|.++...+. +.+|..+ +|.++ +
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 356 68899888754322 2233222 22211 1
Q ss_pred Cccc------------------------c-ccHHHHHcCCCCCC---CCCHHHHHHHHHHcChHHHHHhCCCCccc-ccC
Q 016798 272 ITLF------------------------S-GTVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNT-HIG 322 (382)
Q Consensus 272 ~~lf------------------------~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vg 322 (382)
..++ . .||.||+.+..... -...... ....+.++.+ |+.. .++
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~------~~~~~~L~~~--gL~~~~l~ 725 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAI------FRALDTLREV--GLGYLRLG 725 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHH------HHHHHHHHHT--TCTTSBTT
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHH------HHHHHHHHHc--CCCccccc
Confidence 1111 1 25666653321000 0000011 0123344444 4444 357
Q ss_pred CCCCCCChHHHHHHHHHHHccCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~---~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
....+||||||||++|||+|+++ |++|||||||++||..+...+.+.|+++. +++|+|+
T Consensus 726 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 77889999999999999999996 69999999999999999999999999885 5778774
No 66
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=6.3e-29 Score=226.71 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=106.8
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcceEEecCCCccccccH--
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHVGLVSQDITLFSGTV-- 279 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~lf~~ti-- 279 (382)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|...+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 877654322 234678999999998775421
Q ss_pred HHHHc---CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH-----HHHccCCCCEEEE
Q 016798 280 AENIG---YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI-----ARALYQNSSVLIL 351 (382)
Q Consensus 280 ~eNi~---~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial-----aRall~~~~ilil 351 (382)
.+++. +.......+.+++.++++... ...+. .+|||||+||+++ ||+|+.+|++++|
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 12221 111000122445555554322 22222 6899999999999 8999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 352 DEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 352 DEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
||||+++|.+++..|.+.+.+..++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~ 176 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIE 176 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876543
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.1e-25 Score=216.89 Aligned_cols=175 Identities=18% Similarity=0.229 Sum_probs=121.5
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC----------------------------------------------
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY---------------------------------------------- 239 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~---------------------------------------------- 239 (382)
+++++++.+| +++|+||||||||||+++|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 99999999999999999999543
Q ss_pred ----CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc-cccHHHHHcCCCCCC-CC------------CHHHHHHHH
Q 016798 240 ----DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMT-KI------------DMERVEHTA 301 (382)
Q Consensus 240 ----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~-~~------------~~~~~~~~~ 301 (382)
.+.+|.+.+||.++...+...+...+++.+|+..++ .|++.+|+....... .. +.+++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334578899999875545566667889999998866 889999986542110 00 001121111
Q ss_pred HHc------------Ch-HHHHHhCCCCcccccC------CCCCCCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCC
Q 016798 302 RTA------------NA-DEFVRTLPQGYNTHIG------PRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSAL 358 (382)
Q Consensus 302 ~~~------------~l-~~~i~~lp~Gldt~vg------e~G~~lSgGq~QrialaRall----~~~~ililDEpts~L 358 (382)
... .+ ......++.|+++.++ .....||||||||++|||||+ ++|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 00 0111235557766543 235689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCceec
Q 016798 359 DSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 359 D~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+.+...+.+.|+++.+++|+|+
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~ 277 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIV 277 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999876777764
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=1.5e-25 Score=239.29 Aligned_cols=175 Identities=25% Similarity=0.347 Sum_probs=122.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh-hCC-------CCCCc-------------e
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLY-------DPLSG-------------C 245 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~-g~~-------~~~~G-------------~ 245 (382)
.+++++++. ..|+||||+|++||+++|+|+||||||||++.|+ |.+ .+..| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 488888752 3699999999999999999999999999999854 221 12333 3
Q ss_pred EEEcCEeCCCC---CHH-------HH---------hcceEEecCCCccc-------------------------------
Q 016798 246 ILVDDHDVQNI---RLD-------SL---------RRHVGLVSQDITLF------------------------------- 275 (382)
Q Consensus 246 i~~~g~~~~~~---~~~-------~~---------r~~i~~v~Q~~~lf------------------------------- 275 (382)
|.+|+.++... ++. .. .+.+||++|...+-
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 78888877432 111 11 13457887754321
Q ss_pred ------------------------cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCCh
Q 016798 276 ------------------------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSG 330 (382)
Q Consensus 276 ------------------------~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSg 330 (382)
..|+.||+.+... . ..+.+ ..+.+..+ |+.. .++....+|||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c--hhHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 1134444433221 0 11111 12344444 5555 56778899999
Q ss_pred HHHHHHHHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 331 GQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||++|||+|+++| ++|||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999875 9999999999999999999999999875 4778774
No 69
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.92 E-value=4.6e-25 Score=236.36 Aligned_cols=176 Identities=22% Similarity=0.322 Sum_probs=119.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh-h----CCC---CCCce------------
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-R----LYD---PLSGC------------ 245 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~-g----~~~---~~~G~------------ 245 (382)
..+++++++. ..|+||||+|++|+++||+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 3588998852 3699999999999999999999999999999853 2 222 23443
Q ss_pred -EEEcCEeCCCC---CHH-------HH---------hcceEEecCCCcc---------------------c---------
Q 016798 246 -ILVDDHDVQNI---RLD-------SL---------RRHVGLVSQDITL---------------------F--------- 275 (382)
Q Consensus 246 -i~~~g~~~~~~---~~~-------~~---------r~~i~~v~Q~~~l---------------------f--------- 275 (382)
|.+++.++... ++. .. .+..+|++|...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 45566555321 111 11 1345777775322 0
Q ss_pred -------------------------cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCC
Q 016798 276 -------------------------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLS 329 (382)
Q Consensus 276 -------------------------~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lS 329 (382)
..|+.|++.+... . ..+.+ ..+.+..+ |+.. .++....+||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~---~--~~~~~------~~~~L~~l--gL~~~~l~~~~~~LS 865 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP---I--AGVHR------YLRTLVDV--GLGYVRLGQPAPTLS 865 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT---C--HHHHH------HHHHHHHT--TGGGSBTTCCGGGSC
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc---c--hHHHH------HHHHHHHc--CCCcccccCccccCC
Confidence 0133333332211 0 01111 12344444 5555 5677889999
Q ss_pred hHHHHHHHHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 330 GGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||||||++|||+|+++| ++|||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999875 9999999999999999999999999875 4778874
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=3.1e-27 Score=234.04 Aligned_cols=145 Identities=19% Similarity=0.179 Sum_probs=118.7
Q ss_pred CccceeeEEeeCCC--------------------EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh
Q 016798 203 LVLDQLNLHIRAGE--------------------TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 203 ~~l~~isl~i~~G~--------------------~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
.+|++|||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+.. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 2
Q ss_pred cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH--HHHHHHHHH
Q 016798 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG--QRQRLAIAR 340 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG--q~QrialaR 340 (382)
.++++|++.....|++||+.++.+ .+.+.+.++..++.+ ++..+ . +||| ||||++|||
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~-----~~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST-----NFPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAK 169 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS-----SCCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch-----HHHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHH
Confidence 278999986556799999877642 223556666666432 12222 2 8999 999999999
Q ss_pred HccC----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 341 ALYQ----------NSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 341 all~----------~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
|+.+ +|++++|||||++||+.++.++.+.++++.
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999998873
No 71
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.90 E-value=1.6e-27 Score=230.51 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=121.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCC-CCCCCcEE---------E
Q 016798 122 SFDGCSLVSFITSLVFMIEPIQGVGK-AYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL-DHINGDVK---------F 190 (382)
Q Consensus 122 ~~t~g~l~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~-~~~~~~i~---------~ 190 (382)
.++.+.+.+++.+...+..| .+.. ....+..+..+..|+..+++.+... ........ ....+.++ +
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~-~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN-DETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS-TTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC-CCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68888888887776655443 2222 2222222233344555544322111 00000000 00112344 5
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecC
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 270 (382)
++++| | .++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.+++++
T Consensus 152 ~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~- 223 (330)
T 2pt7_A 152 NLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF- 223 (330)
T ss_dssp TTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC-
T ss_pred Cchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe-
Confidence 56666 5 248999999999999999999999999999999999999999999999875 333222344555543
Q ss_pred CCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEE
Q 016798 271 DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350 (382)
Q Consensus 271 ~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ili 350 (382)
| |||+||++|||||..+|++++
T Consensus 224 ---------------------------------------------g-------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 224 ---------------------------------------------G-------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp ---------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred ---------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEE
Confidence 0 899999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhCCC-cee
Q 016798 351 LDEATSALDSRSELLVRQAVDRLLGHH-TVR 380 (382)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~~~~-TvI 380 (382)
|||||+. .+.+.|+++..++ |+|
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi 269 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTL 269 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEE
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEE
Confidence 9999982 3456777776665 555
No 72
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=1.9e-27 Score=228.26 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=111.9
Q ss_pred CCCcEEEEeEEEEeCCCCCCccceeeEE-----------------------eeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 184 INGDVKFCNISFKYADNMPLVLDQLNLH-----------------------IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~~~~~l~~isl~-----------------------i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..+.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 40 ~~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TTCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 455799999999994 477777764 89999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCC--C-CCCCHHHHHHHHHHcChHHHHHhCCCCc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL--M-TKIDMERVEHTARTANADEFVRTLPQGY 317 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~--~-~~~~~~~~~~~~~~~~l~~~i~~lp~Gl 317 (382)
|++|. +++++|+||+++++.|++||+.+... . ...+.+.+.+.+ +.+..|.
T Consensus 116 ~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L---------~~l~~~~ 169 (312)
T 3aez_A 116 RWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFV---------TSVKSGS 169 (312)
T ss_dssp TSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHH---------HHHHTTC
T ss_pred ccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHH---------HHhCCCc
Confidence 98664 46999999999998899999975321 0 112233333333 3333343
Q ss_pred c-cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCC
Q 016798 318 N-THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (382)
Q Consensus 318 d-t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD 359 (382)
. .. ...|||||+||+++|||++.+|+|||||||++.+|
T Consensus 170 ~~~~----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 170 DYAC----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp SCEE----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred ccCC----cccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 2 33 35899999999999999999999999999999975
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.90 E-value=2.6e-25 Score=196.53 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=93.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~ 296 (382)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. ... .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~--~----- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK--F----- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET--T-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh--c-----
Confidence 689999999999999999999994 667777654332224577899999987 3334431 100 0
Q ss_pred HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH-----ccCCCCEEEEeC--cCCCCCHHHHHHHHHH
Q 016798 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA-----LYQNSSVLILDE--ATSALDSRSELLVRQA 369 (382)
Q Consensus 297 ~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa-----ll~~~~ililDE--pts~LD~~~~~~i~~~ 369 (382)
.+ .+..++..+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.
T Consensus 64 ----------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~ 125 (178)
T 1ye8_A 64 ----------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI 125 (178)
T ss_dssp ----------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred ----------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 00 0134667778999999999999996 999999999999 9999999999999988
Q ss_pred HHHHhCCCcee
Q 016798 370 VDRLLGHHTVR 380 (382)
Q Consensus 370 l~~~~~~~TvI 380 (382)
+++ .+.|+|
T Consensus 126 l~~--~~~~~i 134 (178)
T 1ye8_A 126 MHD--PNVNVV 134 (178)
T ss_dssp HTC--TTSEEE
T ss_pred Hhc--CCCeEE
Confidence 876 344454
No 74
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=1.3e-24 Score=190.68 Aligned_cols=135 Identities=20% Similarity=0.262 Sum_probs=93.7
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc--cccccHHHHHc
Q 016798 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT--LFSGTVAENIG 284 (382)
Q Consensus 207 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~eNi~ 284 (382)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.++.++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 223333 67778763 23333333321
Q ss_pred CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHH-
Q 016798 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE- 363 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~- 363 (382)
... ...+..|+.+.+.. -...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 --------------~~~--------~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 --------------YIV--------SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp --------------HHH--------HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred --------------HHH--------HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 000 01112355554443 345699999999999999999999999999999999944
Q ss_pred ---------------HHHHHHHHHHh-CCCceec
Q 016798 364 ---------------LLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 364 ---------------~~i~~~l~~~~-~~~TvI~ 381 (382)
..+.+.++++. ++.|+|+
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~ 154 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVY 154 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEE
Confidence 77787776653 3677764
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=1.4e-25 Score=211.00 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=88.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHcCCCCCCC-CCH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTK-IDM 294 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~-~~~ 294 (382)
.++|+||||||||||+++|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.++..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 2346789999999998865 99999998864221 122
Q ss_pred HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 295 ~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
+.+.+.+. .++...++ ..||||||||+++|||++. +++|||||++||+.. ..+ ++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~---l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEF---MKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHH---HHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHH---HHHHH
Confidence 33433333 33333332 4799999999999999886 999999999999986 333 33443
Q ss_pred CCCcee
Q 016798 375 GHHTVR 380 (382)
Q Consensus 375 ~~~TvI 380 (382)
+..++|
T Consensus 139 ~~~~vI 144 (270)
T 3sop_A 139 KVVNII 144 (270)
T ss_dssp TTSEEE
T ss_pred hcCcEE
Confidence 335554
No 76
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.88 E-value=9.7e-26 Score=197.92 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=99.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCC---HHHHh-cceE----EecCCCccccccHHHHHc
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIR---LDSLR-RHVG----LVSQDITLFSGTVAENIG 284 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~eNi~ 284 (382)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 66777 4788 899999988 221
Q ss_pred CCCCCCCCCHHHHHHHHHHcChHHHHHh-CCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEE-------EEeCcCC
Q 016798 285 YRDLMTKIDMERVEHTARTANADEFVRT-LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL-------ILDEATS 356 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~-lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~il-------ilDEpts 356 (382)
+ ++ +. .+++++++.. +| |+||.++|+ |||||||||+||||++++|++. +=|.|..
T Consensus 77 -~------~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~ 139 (171)
T 2f1r_A 77 -V------SE-EE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVD 139 (171)
T ss_dssp -C------CH-HH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCS
T ss_pred -C------Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccCccceEEEEecCCcc
Confidence 1 12 21 7899999999 99 999999995 9999999999999999999873 1244421
Q ss_pred ---CCCHHHHHHHHHHHHHHh
Q 016798 357 ---ALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 357 ---~LD~~~~~~i~~~l~~~~ 374 (382)
-+|.+....+.+.+.+..
T Consensus 140 ~~~~f~~~~~~~~a~~i~~~~ 160 (171)
T 2f1r_A 140 GHKWFRRDEVERIAEFILSLL 160 (171)
T ss_dssp SSCEECTTCHHHHHHHHHHHH
T ss_pred cCcccCcccHHHHHHHHHHHH
Confidence 234445566666665443
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.86 E-value=4e-24 Score=204.18 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=102.0
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----HHHH--hcceEEecCCCc-cccc-
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSL--RRHVGLVSQDIT-LFSG- 277 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~~- 277 (382)
+++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4678899999999999999999999999999999999999999999876542 1233 457999999998 7654
Q ss_pred cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcC
Q 016798 278 TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEAT 355 (382)
Q Consensus 278 ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~--ililDEpt 355 (382)
|++||+.++.. ...+ ...++.+++ .........+|| |||++||||+..+|+ +|+|| ||
T Consensus 171 ~v~e~l~~~~~-~~~d----~~lldt~gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 171 VLSKAVKRGKE-EGYD----VVLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp HHHHHHHHHHH-TTCS----EEEECCCCC-----------SSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred HHHHHHHHHHH-cCCc----chHHhcCCC-----------CcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 99999965321 0111 011122222 111111123588 999999999999999 99999 99
Q ss_pred CCCCHHHH
Q 016798 356 SALDSRSE 363 (382)
Q Consensus 356 s~LD~~~~ 363 (382)
+++|+.+.
T Consensus 231 sglD~~~~ 238 (302)
T 3b9q_A 231 TGLNMLPQ 238 (302)
T ss_dssp GGGGGHHH
T ss_pred CCcCHHHH
Confidence 99999865
No 78
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.85 E-value=2.9e-24 Score=201.12 Aligned_cols=170 Identities=19% Similarity=0.180 Sum_probs=134.7
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEeCCCCCHHHHhcceEEecC-----CCcccc
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQ-----DITLFS 276 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~ 276 (382)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++| ++.-|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 9999999999999999999999999999998 999999998876442 345677888 666678
Q ss_pred ccHHHHHcCCCC----CCCCCHHHHHHHHHHcC-----------------hHHHH------------HhCCCCcccccCC
Q 016798 277 GTVAENIGYRDL----MTKIDMERVEHTARTAN-----------------ADEFV------------RTLPQGYNTHIGP 323 (382)
Q Consensus 277 ~ti~eNi~~~~~----~~~~~~~~~~~~~~~~~-----------------l~~~i------------~~lp~Gldt~vge 323 (382)
.+++.++..... +...|.+.+..+++.+. ++..+ ..+++++++.+++
T Consensus 89 ~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~q 168 (261)
T 2eyu_A 89 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 168 (261)
T ss_dssp HHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEEE
Confidence 889999876321 01115666655554421 11111 2355789999999
Q ss_pred CCCCCChHHHHHHHHHHHccCCCCE--EEEeCcCCCCCHHH---------HHHHHHHHHHHhCCCcee
Q 016798 324 RGSSLSGGQRQRLAIARALYQNSSV--LILDEATSALDSRS---------ELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~~~~i--lilDEpts~LD~~~---------~~~i~~~l~~~~~~~TvI 380 (382)
++..+|+| ||++++|+++.+|++ +|+||+|+++|... +..++++++.+.+++|.+
T Consensus 169 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~ 234 (261)
T 2eyu_A 169 RLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITL 234 (261)
T ss_dssp EEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCH
T ss_pred EeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCH
Confidence 99999999 999999999999999 99999999999863 446788888888999875
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.84 E-value=2.9e-23 Score=202.17 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=103.4
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----HHHH--hcceEEecCCCc-ccc-c
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSL--RRHVGLVSQDIT-LFS-G 277 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 277 (382)
+.+||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999876532 1233 457999999998 664 4
Q ss_pred cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcC
Q 016798 278 TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEAT 355 (382)
Q Consensus 278 ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~--ililDEpt 355 (382)
|++||+.++.. ...+ . ..++.+++ .........+|| |||++||||+..+|+ +|+|| ||
T Consensus 228 tv~e~l~~~~~-~~~d-~---~lldt~Gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 287 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD-V---VLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 287 (359)
T ss_dssp HHHHHHHHHHH-TTCS-E---EEEECCCC-----------SSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GG
T ss_pred hHHHHHHHHHh-CCCH-H---HHHHhcCC-----------ChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CC
Confidence 99999975421 0111 0 11122222 111111123578 999999999999999 99999 99
Q ss_pred CCCCHHHH
Q 016798 356 SALDSRSE 363 (382)
Q Consensus 356 s~LD~~~~ 363 (382)
+++|+.+.
T Consensus 288 tglD~~~~ 295 (359)
T 2og2_A 288 TGLNMLPQ 295 (359)
T ss_dssp GGGGGHHH
T ss_pred CCCCHHHH
Confidence 99999865
No 80
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.84 E-value=7.4e-21 Score=186.28 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=52.8
Q ss_pred CCCCCCChHHHHHHHHHHHcc------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALY------QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall------~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~ 340 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVF 340 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345689999999999999999 7999999999999999999999999999875 4678764
No 81
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.83 E-value=8.3e-24 Score=207.71 Aligned_cols=170 Identities=20% Similarity=0.205 Sum_probs=135.8
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEeCCCCCHHHHhcceEEecC-----CCcccc
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQ-----DITLFS 276 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~ 276 (382)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.+.++. + .++..+++|+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677765 8999999999999999999999999999998 899987776653 2 35778999999 888999
Q ss_pred ccHHHHHcCCCCCC-----CCCHHHHHHHHHHcCh-----------------HHHH------------HhCCCCcccccC
Q 016798 277 GTVAENIGYRDLMT-----KIDMERVEHTARTANA-----------------DEFV------------RTLPQGYNTHIG 322 (382)
Q Consensus 277 ~ti~eNi~~~~~~~-----~~~~~~~~~~~~~~~l-----------------~~~i------------~~lp~Gldt~vg 322 (382)
+++++|++.. |+. ..+.+.+..+++.+.. +..+ ..+++++++.++
T Consensus 200 ~~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 9999999874 311 1166777777766542 1121 224678999999
Q ss_pred CCCCCCChHHHHHHHHHHHccCCCCE--EEEeCcCCCCCHH----H-----HHHHHHHHHHHhCCCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQNSSV--LILDEATSALDSR----S-----ELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~~~i--lilDEpts~LD~~----~-----~~~i~~~l~~~~~~~TvI~ 381 (382)
+++..+|+| ||++++|+++.+|++ +|+||+|++||.. + +..++++++.+.+++|.+.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~ 346 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLE 346 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTT
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHH
Confidence 999999999 999999999999999 9999999999965 3 3457778888888888764
No 82
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.83 E-value=3.9e-23 Score=202.49 Aligned_cols=148 Identities=17% Similarity=0.248 Sum_probs=107.7
Q ss_pred ccceeeEEeeC--CCEEEEECCCCCcHHHHHHHHhhCCCCCC----ceEEEc----CEeCCCCCHHHHhcceEEecCCCc
Q 016798 204 VLDQLNLHIRA--GETVALIGPSGGGKSTLAKLLLRLYDPLS----GCILVD----DHDVQNIRLDSLRRHVGLVSQDIT 273 (382)
Q Consensus 204 ~l~~isl~i~~--G~~~aivG~sGsGKSTl~~ll~g~~~~~~----G~i~~~----g~~~~~~~~~~~r~~i~~v~Q~~~ 273 (382)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|.++ |.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 999874 5555 4555555 56999999999
Q ss_pred cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCC--ccc--------ccCCCCCCCChHHHHHHHHHHHc-
Q 016798 274 LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQG--YNT--------HIGPRGSSLSGGQRQRLAIARAL- 342 (382)
Q Consensus 274 lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~G--ldt--------~vge~G~~lSgGq~QrialaRal- 342 (382)
+|.+|++||+.+++. +..+..............++..++.+ ++. +..++|.++|+||+||++++|++
T Consensus 235 ~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~ 312 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT--DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLK 312 (365)
T ss_dssp HHHHHHCSSEEEESS--CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHH
T ss_pred HHHHhccCCEEEEeC--CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHH
Confidence 999999999988753 22234444444444445555555433 333 33367888999999999999999
Q ss_pred --cC--CCCEEEEeCcC
Q 016798 343 --YQ--NSSVLILDEAT 355 (382)
Q Consensus 343 --l~--~~~ililDEpt 355 (382)
++ +++++++||||
T Consensus 313 ~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 313 KLLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHHGGGCCCEEEECSS
T ss_pred HHHHHcCCCEEEeCCCC
Confidence 77 89999999997
No 83
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.83 E-value=5e-25 Score=215.65 Aligned_cols=223 Identities=16% Similarity=0.091 Sum_probs=148.8
Q ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCC-CCCCcE
Q 016798 111 LCGGSLLVSG-GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLD-HINGDV 188 (382)
Q Consensus 111 ~~~g~~lv~~-g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~-~~~~~i 188 (382)
.+.|.+.+.. +.++.+.+.+++.+...+..| .+......+..+..+..|+..++ ++............ ...+.+
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~i 127 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRR 127 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCC
Confidence 3446665555 789999999998887766555 23222222333334455666655 22211111000000 012335
Q ss_pred ---------EEEeEEEE---eCCCCCCcc---------ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 189 ---------KFCNISFK---YADNMPLVL---------DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 189 ---------~~~~v~f~---y~~~~~~~l---------~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
+|++|+|+ |++.++++| +++||+|++|+.++|+||||||||||+++|+|+++|++|.|.
T Consensus 128 tl~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ 207 (361)
T 2gza_A 128 TLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT 207 (361)
T ss_dssp CHHHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE
T ss_pred CHHHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE
Confidence 78899998 864223455 999999999999999999999999999999999999999999
Q ss_pred EcCEeCCCCCHHHHhcceEEec-CCCcc---ccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCC
Q 016798 248 VDDHDVQNIRLDSLRRHVGLVS-QDITL---FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (382)
Q Consensus 248 ~~g~~~~~~~~~~~r~~i~~v~-Q~~~l---f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge 323 (382)
++|. .++.....++.+++++ |++.+ +..|+++||.++... .++..+...++...+.+++..+|.|++|.+++
T Consensus 208 ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~--~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t 283 (361)
T 2gza_A 208 IEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM--KPTRILLAELRGGEAYDFINVAASGHGGSITS 283 (361)
T ss_dssp EESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS--CCSEEEESCCCSTHHHHHHHHHHTTCCSCEEE
T ss_pred ECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc--CCCEEEEcCchHHHHHHHHHHHhcCCCeEEEE
Confidence 9985 4555555678899999 99876 788999999865431 11222222233345667889999999999999
Q ss_pred CCCCCChHHHHHHHHHHH
Q 016798 324 RGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRa 341 (382)
-+.+-+.+..+|+.....
T Consensus 284 ~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 284 CHAGSCELTFERLALMVL 301 (361)
T ss_dssp EECSSHHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHHh
Confidence 888878889999987764
No 84
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.82 E-value=8.6e-23 Score=204.25 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=122.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE---eCCCCC-----
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH---DVQNIR----- 257 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~---~~~~~~----- 257 (382)
+.++++++++.|+.+ ..+|+++ |+|++|++++|+||||||||||+++|+|+++|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468899999999743 4599999 999999999999999999999999999999999999999998 554321
Q ss_pred HHHHhcceEEecCC-Cccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHHHH
Q 016798 258 LDSLRRHVGLVSQD-ITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQ 334 (382)
Q Consensus 258 ~~~~r~~i~~v~Q~-~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq~Q 334 (382)
...+++.++|++|+ ..++ ..|+.+|+.+.. +.... .+.+. .+-+...+||+|| |
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a--------e~~~~--------------~~~~v~~~ld~l~~lS~g~-q 264 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA--------EDFRD--------------RGQHVLLIMDSLTRYAMAQ-R 264 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH--------HHHHT--------------TTCEEEEEEECHHHHHHHH-H
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHH--------HHHHh--------------CCCCHHHHHHhHHHHHHHH-H
Confidence 34578889999995 3344 558999986421 11110 01110 0112356899999 9
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
|++|| +.+|++ |++||+.+...+.+.++++.+
T Consensus 265 rvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~ 296 (438)
T 2dpy_A 265 EIALA---IGEPPA------TKGYPPSVFAKLPALVERAGN 296 (438)
T ss_dssp HHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSC
T ss_pred HHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHh
Confidence 99999 899998 999999999999999998865
No 85
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=3.7e-22 Score=180.05 Aligned_cols=152 Identities=16% Similarity=0.048 Sum_probs=96.1
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (382)
.++++| .+|++||+++|+||||||||||+++|+|++++ |.+++.....-+....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 79999999999999999999999999999963 44443211111112235679999999998865 777
Q ss_pred HHHcC-----CC-CCCCCCHHHHHHH----------HHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 281 ENIGY-----RD-LMTKIDMERVEHT----------ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 281 eNi~~-----~~-~~~~~~~~~~~~~----------~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|+.. ++ .....+.+++.+. ++..++.++....| ..|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 77632 10 0001223333332 23334444444444 2344 9999
Q ss_pred CCCEEEEeCcCCCC----CHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSAL----DSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~L----D~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|++++|||||+++ |+...+++.+.++++.+ +.|+|+
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~ 183 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVV 183 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEE
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEE
Confidence 99999999999998 67788999999988853 567764
No 86
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=7.5e-22 Score=177.09 Aligned_cols=169 Identities=18% Similarity=0.177 Sum_probs=104.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC-----CCCCceEEE-------cCEeCCC
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY-----DPLSGCILV-------DDHDVQN 255 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~-----~~~~G~i~~-------~g~~~~~ 255 (382)
|+++|++|+|+. +++++ |++++|++++|+|+||||||||++.|+|.. .|+.|.+.+ ++..+.+
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 788999999962 57888 899999999999999999999999999998 888888764 2232221
Q ss_pred CC-----------HHHHhcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccC
Q 016798 256 IR-----------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIG 322 (382)
Q Consensus 256 ~~-----------~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vg 322 (382)
.+ .+.+++.++++.|+...+++ .+..++..+. ...++++.+.++ . .+... .++
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~~~~~---------~--~~~~~~~v~ 144 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL---KDLDQQMIEWAV---------D--SNIAVLVLL 144 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC---CHHHHHHHHHHH---------H--TTCCEEEEE
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC---chhHHHHHHHHH---------H--cCCCeEEEE
Confidence 11 12334445555554333333 3333333221 001122222222 1 12222 235
Q ss_pred CCCCCCChHHHHH-HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 323 PRGSSLSGGQRQR-LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 323 e~G~~lSgGq~Qr-ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
..-..+|+||||| +..+|+++.+|+++++|||||++|..+...+.+.|.++.+
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 5566899999999 8999999999999999999999999999999999988654
No 87
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=2.1e-21 Score=179.73 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=87.3
Q ss_pred CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHH
Q 016798 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (382)
Q Consensus 201 ~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (382)
..++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.+++++|++.....|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456999999999999999999999999999999999987 556554 357789999999743345899
Q ss_pred HHHcCCCCCC------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCc
Q 016798 281 ENIGYRDLMT------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (382)
Q Consensus 281 eNi~~~~~~~------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEp 354 (382)
+|+.+..... ..+.+.+.+.++. +.++.+.. ...||+||+||+++ ++++.+|+++|+|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCee----cccccccccCccCc-eEEecCCCEEEEeCc
Confidence 9875422110 1222333333322 22233433 35899999999988 799999999999999
Q ss_pred CCCCCH
Q 016798 355 TSALDS 360 (382)
Q Consensus 355 ts~LD~ 360 (382)
....|.
T Consensus 143 ~~~~~~ 148 (245)
T 2jeo_A 143 LVFYSQ 148 (245)
T ss_dssp TTTTSH
T ss_pred cccccH
Confidence 887764
No 88
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.79 E-value=5.4e-21 Score=170.35 Aligned_cols=127 Identities=24% Similarity=0.298 Sum_probs=98.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCH
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM 294 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~ 294 (382)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++. .++++++|++|+. .++ ++|+..... ..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~--~~~- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGL--EPP- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCC--CCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccc--cCC-
Confidence 78999999999999999999999999 999 999999886543 5688999999986 333 334321100 000
Q ss_pred HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH-HHHH---HccCCCCEEEEeC--cCCCCCHHHHHHHHH
Q 016798 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL-AIAR---ALYQNSSVLILDE--ATSALDSRSELLVRQ 368 (382)
Q Consensus 295 ~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri-alaR---all~~~~ililDE--pts~LD~~~~~~i~~ 368 (382)
+...+..+|+.+..+|+|||+++ +++| |++.+|+++|||| ||..+|......+.+
T Consensus 70 -------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~ 130 (189)
T 2i3b_A 70 -------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ 130 (189)
T ss_dssp -------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH
T ss_pred -------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH
Confidence 11234478999999999999998 5566 7899999999999 898899987777766
Q ss_pred HHH
Q 016798 369 AVD 371 (382)
Q Consensus 369 ~l~ 371 (382)
.++
T Consensus 131 ~l~ 133 (189)
T 2i3b_A 131 TLS 133 (189)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 89
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.78 E-value=8.9e-22 Score=177.46 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=102.5
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc---cHHHHHcC--C
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG---TVAENIGY--R 286 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~---ti~eNi~~--~ 286 (382)
.++|+++||+||||||||||+++|+|++.| +++|++||+++++. |+++|..+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 58999999998843 67777654 2
Q ss_pred CCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH----HHHHHHHHHccCCCCEEEEeCcCCC-----
Q 016798 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ----RQRLAIARALYQNSSVLILDEATSA----- 357 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq----~QrialaRall~~~~ililDEpts~----- 357 (382)
.+ ...+.+.+.++++..++.+.+.. .+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~-~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~ 128 (211)
T 3asz_A 61 HP-DAFDLALYLEHAQALLRGLPVEM-----------PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLK 128 (211)
T ss_dssp SG-GGBCHHHHHHHHHHHHTTCCEEE-----------CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEE
T ss_pred Ch-hhhhHHHHHHHHHHHHcCCCcCC-----------CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEE
Confidence 22 12355667677666544333222 235567774 5799999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHHh--CCCcee
Q 016798 358 --LDSRSELLVRQAVDRLL--GHHTVR 380 (382)
Q Consensus 358 --LD~~~~~~i~~~l~~~~--~~~TvI 380 (382)
||..++.++.+.+++.. +++|++
T Consensus 129 i~ld~~~~~~~~r~l~r~~~~~g~t~~ 155 (211)
T 3asz_A 129 VFVDADADERFIRRLKRDVLERGRSLE 155 (211)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCCCHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999987753 466654
No 90
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.78 E-value=2.7e-22 Score=180.01 Aligned_cols=138 Identities=21% Similarity=0.229 Sum_probs=108.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC-------------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccH
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD-------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTV 279 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 279 (382)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+.+.+++.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 6899999999999999999999999986 78887 589988888888888875 79999999999
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH-HccCCCCEEEEeCcCCCC
Q 016798 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR-ALYQNSSVLILDEATSAL 358 (382)
Q Consensus 280 ~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR-all~~~~ililDEpts~L 358 (382)
.+|+ +|. ++++++++++.....- .+-.|+|+++.... ++ .|| +++.+|++++|||+|+++
T Consensus 77 ~~n~-~g~-----~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~ 137 (198)
T 1lvg_A 77 SGNL-YGT-----SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLR 137 (198)
T ss_dssp TTEE-EEE-----EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHH
T ss_pred cCcc-CCC-----CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhc
Confidence 9998 553 4678888876532110 11234566665321 12 567 899999999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 016798 359 DSRSELLVRQAVDRLL 374 (382)
Q Consensus 359 D~~~~~~i~~~l~~~~ 374 (382)
|.++++.|.+.|.+..
T Consensus 138 d~~~e~~i~~~l~~~~ 153 (198)
T 1lvg_A 138 NTETEESLAKRLAAAR 153 (198)
T ss_dssp TCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987764
No 91
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.75 E-value=4.3e-18 Score=165.86 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHHHHcc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 327 SLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 327 ~lSgGq~QrialaRall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
.|||||+||++|||+|+ .+|+||+||||||+||+.....+.+.++++. .|+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i 325 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIV 325 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEE
Confidence 69999999999999999 8999999999999999999999999998864 5655
No 92
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.75 E-value=8.3e-21 Score=180.18 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=94.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCC-
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK- 291 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~- 291 (382)
+++.+++|+|+||||||||+++|.+++.+. | .. ++.+.+|+||+++|+.++++|+.++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g--------------~~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y--------------GG-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H--------------GG-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C--------------CC-CceEEEeccccccCChHHHHHHhccccccch
Confidence 467899999999999999999999999764 2 01 445667799999999999999976531100
Q ss_pred CCHHHHHHHHHHcChHHHHHhCCCCcccc------cCCCCCCCChHHHHHHHHH--HHccCCCCEEEEeCcCCCCCHHH
Q 016798 292 IDMERVEHTARTANADEFVRTLPQGYNTH------IGPRGSSLSGGQRQRLAIA--RALYQNSSVLILDEATSALDSRS 362 (382)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~i~~lp~Gldt~------vge~G~~lSgGq~Qriala--Rall~~~~ililDEpts~LD~~~ 362 (382)
.+....-.+.+...+.+++..+++|++|. +...+..+||||+||+++| |++ +|+|+|+||+|+++|++.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00000001112234567889999998764 4566889999999999998 555 999999999999999853
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.75 E-value=1e-18 Score=185.25 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=103.5
Q ss_pred CCcEEEEeEEEEeCC---CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-CCCceEEEcCEeCCCCCHHH
Q 016798 185 NGDVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~---~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~ 260 (382)
.+.|++++. ++|- ++..+++|+||+ |++++|+||||||||||+|+++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 457889887 4453 335789999999 99999999999999999999999974 6778753 1 1
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~-----------------------------------------g~S~~~~e~~~la 647 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG-----------------------------------------GKSTFMVEMEEVA 647 (765)
T ss_dssp SEEEECCCSE---EEEECCC-----------------------------------------------CCSHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh-----------------------------------------cccHHHHHHHHHH
Confidence 2456888877 5543 56665522 2578999999999
Q ss_pred HHc--cCCCCEEEEeCc---CCCCCHHHH-HHHHHHHHHHhCCCceec
Q 016798 340 RAL--YQNSSVLILDEA---TSALDSRSE-LLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 340 Ral--l~~~~ililDEp---ts~LD~~~~-~~i~~~l~~~~~~~TvI~ 381 (382)
+++ +.+|+++||||| |+++|..+. ..+.+.|.+ .++|+|+
T Consensus 648 ~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~ 693 (765)
T 1ewq_A 648 LILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLF 693 (765)
T ss_dssp HHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEE
T ss_pred HHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEE
Confidence 999 999999999999 999999875 578888877 4667663
No 94
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=8.9e-20 Score=174.06 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=72.7
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC-CCCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
+||++.|+. ..++++++|+| +|+||||+|||||++.|+|. ..|++| |.++|.++.. .. . ++.+++++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEe
Confidence 478888964 36999999998 99999999999999999998 889999 8888877643 11 1 45689999
Q ss_pred CCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCE
Q 016798 270 QDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (382)
Q Consensus 270 Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~i 348 (382)
|++.++ .-|++|+..++.... ..++.....+. +.+..+. .-.++|||||||+++|||+. +
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~--~~e~~~~l~~~--l~~~~~~-----------~~~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAIN--CRDCFKTIISY--IDEQFER-----------YLHDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp C---CCEEEEEEEEC-------------CTTHHHH--HHHHHHH-----------HHHHHTSSCCTTCCCCCCCE----E
T ss_pred cCCCcccCcchhhhhhhhhhcC--cHHHHHHHHHH--HHHHHHH-----------HHHHhCHHhhhhhhhhhhhh----e
Confidence 988765 559999987764210 11111111111 1111111 12579999999999999986 9
Q ss_pred EEEeCcCCC-CCHHHHHHHHHHHHHHhC
Q 016798 349 LILDEATSA-LDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 349 lilDEpts~-LD~~~~~~i~~~l~~~~~ 375 (382)
+++||||++ ||+... +.++++.+
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~ 154 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHN 154 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTT
T ss_pred eeeecCcccCCCHHHH----HHHHHHHh
Confidence 999999985 999863 44444443
No 95
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.74 E-value=4e-18 Score=185.72 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=101.7
Q ss_pred CcEEEEe-----EEEEeCCCCCCccceeeEEeeC-------CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 186 GDVKFCN-----ISFKYADNMPLVLDQLNLHIRA-------GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 186 ~~i~~~~-----v~f~y~~~~~~~l~~isl~i~~-------G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
+.|+++| |++.|+++ ..+++|++|++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 4599999 99999533 4699999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhcceE-EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 254 QNIRLDSLRRHVG-LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 254 ~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
..++| ||||++. ..|+.|||... .++.+.+.. | -..+|+++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~r-----------------ig~~d~~~~---~--------~stf~~em 856 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFTR-----------------LGASDRIMS---G--------ESTFFVEL 856 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEEE-----------------CC--------------------CHHHHHH
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHHH-----------------cCCHHHHhh---c--------hhhhHHHH
Confidence 34566 9999983 55777877321 111111111 2 13567766
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHH-HHHHHHHHHHhC--CCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSE-LLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~-~~i~~~l~~~~~--~~TvI~ 381 (382)
++ +++||+++.+|+++||||||+|+|+... ..+.+.++.+.+ ++|+|+
T Consensus 857 ~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~ 907 (1022)
T 2o8b_B 857 SE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLF 907 (1022)
T ss_dssp HH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 64 9999999999999999999999999874 456777777653 567663
No 96
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.73 E-value=9.8e-19 Score=169.84 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=115.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC-------CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-------IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~-------~~~ 258 (382)
.-++.+++++.|+.+ ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|.+..+ +..
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 357889999999743 4599999 9999999999999999999999999999999999999998865221 112
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc-cCCCCCCCChHHHHHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~-vge~G~~lSgGq~Qria 337 (382)
..+++.+.+++|.+. ...+++..+.....+.++... .|.+.. +-+...+||+|| ||++
T Consensus 122 ~~~~~~v~~~~~~~~------------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 122 STLSKCVLVVTTSDR------------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp HHHTTEEEEEECTTS------------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHH
T ss_pred hhhhceEEEEECCCC------------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHH
Confidence 223444555555321 013444445555555555433 233321 113457899999 9999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
+| +.+|++ |+|+|+.....+.+.++++.
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller~~ 208 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAG 208 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTTCE
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHHHh
Confidence 99 688887 99999999999999998875
No 97
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.73 E-value=5.5e-20 Score=191.31 Aligned_cols=157 Identities=17% Similarity=0.265 Sum_probs=98.5
Q ss_pred cEEEEeEEEEeCCCCCCcccee----------eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEEcCEeCCC
Q 016798 187 DVKFCNISFKYADNMPLVLDQL----------NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQN 255 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~i----------sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~~g~~~~~ 255 (382)
.++++|+++.|++...++|+.+ +++++. +|||||||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5788999999975433455544 366765 999999999999999999999988 79999999998632
Q ss_pred ---CCHHHHhcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 256 ---IRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 256 ---~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
-....+|+.++|++|++.+++. |++||+.+.. .. +.. .+..+|
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~--------------~~------~~~-----------~~~~~s-- 133 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ--------------NA------IAG-----------EGMGIS-- 133 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH--------------HH------HHC-----------SSSCCC--
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHH--------------HH------hcC-----------Cccccc--
Confidence 1234678899999999998765 8999984310 00 100 011122
Q ss_pred HHHHHHHHHHccCCCCEEEEeCc------CCCCCHHHHHHHHHHHHHHh-CCCcee
Q 016798 332 QRQRLAIARALYQNSSVLILDEA------TSALDSRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEp------ts~LD~~~~~~i~~~l~~~~-~~~TvI 380 (382)
++++.++.+...+|+++++||| |++||+..+..+.+.++++. ++++++
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~ii 188 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETIS 188 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCE
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 2445556666778999999999 99999999999999999964 344443
No 98
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=3.4e-19 Score=176.91 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=91.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
+.|.++||+++|++ ..+++|+||+| +|+|+||||||||++.|+|...|..| .+|.++... ....+..+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 35889999999975 36999999998 99999999999999999999986555 233332211 11124568
Q ss_pred EEecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++++|++.++ ..|++||+.++... +.++.+.. +.+++.. .++.+.+||++||||+++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~---~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAV---DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp ECC------CEEEEEEECC--------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhc---cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhcc
Confidence 9999998887 56999999887531 11111111 1223321 344566789999999999
Q ss_pred CCC---EEEEeCcC-CCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 345 NSS---VLILDEAT-SALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 345 ~~~---ililDEpt-s~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
+|+ +|++|||| ++||+... . .++.+.++.++|
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~-~---~lk~L~~~v~iI 171 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI-E---FMKRLHEKVNII 171 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH-H---HHHHHTTTSEEE
T ss_pred CCCeeEEEEEecCcccCCCHHHH-H---HHHHHhccCcEE
Confidence 999 99999999 69998763 2 333444444443
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=4.5e-20 Score=189.04 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=104.5
Q ss_pred EeCCCCCCccceeeE-EeeCCCEEEEECCCCCcHHHHHHH--HhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCC
Q 016798 196 KYADNMPLVLDQLNL-HIRAGETVALIGPSGGGKSTLAKL--LLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (382)
Q Consensus 196 ~y~~~~~~~l~~isl-~i~~G~~~aivG~sGsGKSTl~~l--l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 272 (382)
+|+.+ .++|+++|+ .|++|++++|+||||||||||+++ +.|+++|.+|.|.++|.+. ..+....++.+||++|++
T Consensus 20 ~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 20 KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHH
T ss_pred cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHh
Confidence 45543 469999999 999999999999999999999999 6899999999999999873 223334567899999997
Q ss_pred ccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEe
Q 016798 273 TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352 (382)
Q Consensus 273 ~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililD 352 (382)
... +|+.+.... . + ++..++++..++.+.....| ..|||| +|++++||
T Consensus 98 ~~~-----~~l~~~~~~-~-~-~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilD 145 (525)
T 1tf7_A 98 VDE-----GKLFILDAS-P-D-PEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSID 145 (525)
T ss_dssp HHT-----TSEEEEECC-C-C-SSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEE
T ss_pred hcc-----CcEEEEecC-c-c-cchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEEC
Confidence 631 122111100 0 0 00011222233333333322 345665 47899999
Q ss_pred CcCCC-----CCHHHHHHHHHHHHHHhC-CCceec
Q 016798 353 EATSA-----LDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 353 Epts~-----LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||+. +|+...+.+.+.++++.+ +.|+|.
T Consensus 146 e~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~ 180 (525)
T 1tf7_A 146 SVTSVFQQYDASSVVRRELFRLVARLKQIGATTVM 180 (525)
T ss_dssp CSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99984 688999999999988754 677764
No 100
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.72 E-value=1.7e-18 Score=164.39 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=103.9
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-eEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (382)
++|+++++.+++|++++|+||||||||||++.|+|...|.+| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 77664433 3555666665555554432 2233
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH-HHHHHHHHHccCCCCEEEEeCcCC---C
Q 016798 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ-RQRLAIARALYQNSSVLILDEATS---A 357 (382)
Q Consensus 282 Ni~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq-~QrialaRall~~~~ililDEpts---~ 357 (382)
|+..+. .++++..+..+ +++...+-+ +.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~----~~~~~~~~~~~-----~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 97 SLKREI----IENGKFDQWFD-----ELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp HHHHHH----HHHTHHHHHHH-----HHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred ccccCC----CCHHHHHHHHH-----HHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 443221 11222222221 122222211 222335688998 67777 999999999999999999 4
Q ss_pred ---CCH-HHHHHHHHHHHHHhC--CCceec
Q 016798 358 ---LDS-RSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 358 ---LD~-~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|. .....+.+.|+++.+ +.|+|.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~ 192 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVV 192 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 454 555778888887753 667763
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.71 E-value=1.4e-18 Score=169.05 Aligned_cols=134 Identities=23% Similarity=0.212 Sum_probs=101.7
Q ss_pred cccee-eEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCC----ce-EEEcCEeCCCCCHHHHhcceEEecCCCccc
Q 016798 204 VLDQL-NLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLS----GC-ILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (382)
Q Consensus 204 ~l~~i-sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 275 (382)
.|+.+ ++.|++|++++|+||||||||||++.+++.+ +|++ |. |++++.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6666 68 899987641 245688999999998
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc-------CCCCE
Q 016798 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY-------QNSSV 348 (382)
Q Consensus 276 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall-------~~~~i 348 (382)
..++.||+.+... .+ |.+|+|++.++++++ .+|++
T Consensus 193 ~~~v~~ni~~~~~---~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 193 PDEVLKHIYVARA---FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp HHHHGGGEEEEEC---CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred HHHHhhCEEEEec---CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 8899999987542 11 234555566666655 78999
Q ss_pred EEEeCcCCCCCHHH------------HHHHHHHHHHHh--CCCceec
Q 016798 349 LILDEATSALDSRS------------ELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 349 lilDEpts~LD~~~------------~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|+||||+.+|++. ..++...|+++. .+.|+|.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii 281 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV 281 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 99999999999863 244555555543 2667663
No 102
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=4.6e-18 Score=168.37 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=108.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCE--EEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~--~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
.+++++ +++|++ .+ |+++||++++|++ +||+||||||||||+++|+|+. ++|.++...+....++.
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 455566 788864 34 9999999999999 9999999999999999999994 34545444333344668
Q ss_pred eEEecCCCccc-cccHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhC-------CCCcccc-------cCCCC
Q 016798 265 VGLVSQDITLF-SGTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTL-------PQGYNTH-------IGPRG 325 (382)
Q Consensus 265 i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~l-------p~Gldt~-------vge~G 325 (382)
++|++|++.++ ..|+.||+.++.. .+.+. +.+.++. .+.+++... +..-|+. |-+.+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~---~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQ---INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC----CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred EEEEeecCccccccchhhhhhhhhc---cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 99999999987 4599999998863 22221 1111111 122233221 2222332 12344
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHH-Hh
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR-LL 374 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~-~~ 374 (382)
..|+-.+ +.++++|..+++|+++|+||..|.+.....+.+.+++ +.
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV 206 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH
Confidence 5677665 7899999999999999999999998877788888876 44
No 103
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.70 E-value=4.2e-18 Score=162.56 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=88.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----HHHH--hcceEEecCCCccccc-cHHHHHcCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSL--RRHVGLVSQDITLFSG-TVAENIGYR 286 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~lf~~-ti~eNi~~~ 286 (382)
+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..+++++|++.+++. |++||+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999986543 1223 4579999999988765 888988532
Q ss_pred CCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcCCCCC
Q 016798 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALD 359 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~--ililDEpts~LD 359 (382)
.. + +.+..+-..+...+. ....++..++||.++|||+..+|+ ++.|| |+++.|
T Consensus 181 ~~-------------~--~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~ 235 (304)
T 1rj9_A 181 KA-------------R--GYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN 235 (304)
T ss_dssp HH-------------H--TCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH
T ss_pred Hh-------------C--CCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH
Confidence 10 0 000001011111110 112345667999999999999999 55567 555544
No 104
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.69 E-value=1.5e-17 Score=170.06 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=51.9
Q ss_pred CCC-ChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 326 SSL-SGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 326 ~~l-SgGq~QrialaRall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
..| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~ 453 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLV 453 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 456 999999999999999999 99999999999999999999999999877778764
No 105
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.69 E-value=3.7e-20 Score=166.99 Aligned_cols=134 Identities=21% Similarity=0.206 Sum_probs=102.9
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCC----C
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR----D 287 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~----~ 287 (382)
.++|++++|+||||||||||+++|+|+++|. | ..+++|++|.+.++.+..+|+... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999876 4 257888898888888877776421 1
Q ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCCCC--cccccCCCCCCCChHHHHHHHHH-HHccCCCCEEEEeCcC---------
Q 016798 288 LMTKIDMERVEHTARTANADEFVRTLPQG--YNTHIGPRGSSLSGGQRQRLAIA-RALYQNSSVLILDEAT--------- 355 (382)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~G--ldt~vge~G~~lSgGq~Qriala-Rall~~~~ililDEpt--------- 355 (382)
+. ..+.+.+ .+++..++.| +++++.+.+..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 ~~-~~~~~~~---------~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d 149 (208)
T 3c8u_A 80 PE-TFDFEGF---------QRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWD 149 (208)
T ss_dssp GG-GBCHHHH---------HHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCS
T ss_pred Cc-hhhHHHH---------HHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcC
Confidence 11 1122222 2334444444 78889999999999999999999 9999999999999985
Q ss_pred --CCCCHHHHHHHHHHHHHHh
Q 016798 356 --SALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 356 --s~LD~~~~~~i~~~l~~~~ 374 (382)
.-+|...+..+.+.+++..
T Consensus 150 ~~i~vd~~~~~~~~R~~~R~~ 170 (208)
T 3c8u_A 150 VSIRLEVPMADLEARLVQRWL 170 (208)
T ss_dssp EEEEECCCHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHH
Confidence 3467778877888777653
No 106
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.68 E-value=2.4e-16 Score=152.65 Aligned_cols=57 Identities=37% Similarity=0.377 Sum_probs=50.2
Q ss_pred CCCCChHHHH------HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 325 GSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~Q------rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~ 309 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4679999999 67888999999999999999999999999999999988653 566653
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.67 E-value=7.8e-17 Score=165.01 Aligned_cols=131 Identities=14% Similarity=0.051 Sum_probs=96.9
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHc-CCC
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG-YRD 287 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~-~~~ 287 (382)
+..+++|++++|+|+||||||||++.++|...|. |. +.+.+++|++. .++.+|.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 3489999999999999999999999999999875 43 11456677662 24555542 22
Q ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHH-----H
Q 016798 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-----S 362 (382)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~-----~ 362 (382)
.+.++ +.. .|+..........|||||+||+++||++..+|+++|+| ||++||.. .
T Consensus 333 ----~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 333 ----MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp ----CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred ----CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 22222 111 13333334455789999999999999999999999999 99999999 8
Q ss_pred HHHHHHHHHHHh-CCCceec
Q 016798 363 ELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 363 ~~~i~~~l~~~~-~~~TvI~ 381 (382)
.+.+.+.++.++ .+.|+|.
T Consensus 393 ~~~i~~ll~~l~~~g~tvil 412 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLF 412 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 888888888775 3667763
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.65 E-value=1.5e-16 Score=155.01 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=88.7
Q ss_pred EeEEEEeCCCCCCccceeeE-------EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEeCCCCCHHHHh
Q 016798 191 CNISFKYADNMPLVLDQLNL-------HIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl-------~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r 262 (382)
.+++++|.....+.|+++.+ .+.+|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 57788886655677888887 78899999999999999999999999999987 56665443333 222 23
Q ss_pred cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
...++++|.+.-.. ..+..+ +|||||
T Consensus 168 ~~~~~v~q~~~~~~--------------~~~~~~----------------------------------------~La~aL 193 (356)
T 3jvv_A 168 SKKCLVNQREVHRD--------------TLGFSE----------------------------------------ALRSAL 193 (356)
T ss_dssp CSSSEEEEEEBTTT--------------BSCHHH----------------------------------------HHHHHT
T ss_pred ccccceeeeeeccc--------------cCCHHH----------------------------------------HHHHHh
Confidence 34456666432110 011111 999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
..+|+++++|||| |.++...+.++ ...++|++
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl 225 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTA---AETGHLVF 225 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEE
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEE
Confidence 9999999999999 77765444443 34577776
No 109
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.65 E-value=2.2e-17 Score=149.81 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=88.0
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-------CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHH
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDP-------LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 283 (382)
.|++|++++|+||||||||||+++|+|.+.| ..|.+.+++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 444778877542 11 2357788888888878999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc--cCCCCEEEEeCcCCCCCHH
Q 016798 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEATSALDSR 361 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal--l~~~~ililDEpts~LD~~ 361 (382)
.+.... +..+.....+. +.+.+. +++ ..+|+++++||||+.+|++
T Consensus 95 ~~~~~~---~~~~~~~~~~~--~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 95 YVARAF---NSNHQMLLVQQ--AEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp EEEECC---SHHHHHHHHHH--HHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHH
T ss_pred EEEecC---ChHHHHHHHHH--HHHHHH----------------------------HhcccCCceeEEEECChHHHhccc
Confidence 775431 22111111111 111111 111 3589999999999999984
Q ss_pred -------HH-----HHHHHHHHHHh--CCCceec
Q 016798 362 -------SE-----LLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 362 -------~~-----~~i~~~l~~~~--~~~TvI~ 381 (382)
.+ ..+.+.|.++. .+.|+|.
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~ 175 (231)
T 4a74_A 142 YIGRGALAERQQKLAKHLADLHRLANLYDIAVFV 175 (231)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 22 25666666653 2677763
No 110
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.64 E-value=4.3e-16 Score=155.59 Aligned_cols=54 Identities=28% Similarity=0.311 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 327 SLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 327 ~lSgGq~QrialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
.||||||||++|||+|+ ++|+++||||||++||+.+...+.+.|+++.+ +.++|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~i 391 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 391 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEE
Confidence 49999999999999999 68999999999999999999999999998754 45555
No 111
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.64 E-value=1.3e-16 Score=171.65 Aligned_cols=145 Identities=14% Similarity=0.150 Sum_probs=92.9
Q ss_pred CcEEEEeEEEEe-----CCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH
Q 016798 186 GDVKFCNISFKY-----ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 186 ~~i~~~~v~f~y-----~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 260 (382)
+.|.+++...-. +.++..+++|+||++++|++++|+|||||||||++++++++.-..
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 357787754322 112357999999999999999999999999999999997642110
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+.-.++|++..-+ ++.+++. ...++.+.+. .+-..+|+|++|+..++|
T Consensus 701 --q~g~~vpa~~~~i--~~~d~i~-----------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVDGIF-----------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCSEEE-----------------EEC---------------------CCHHHHHHHHHHHHH
T ss_pred --hcCccccchhhhh--hHHHHHH-----------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHH
Confidence 0011223222100 0011110 0011111111 112578999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHh--CCCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVR-QAVDRLL--GHHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~-~~l~~~~--~~~TvI~ 381 (382)
+ +.+|+++||||||+|+|+.....+. ..++.+. .++|+|+
T Consensus 749 ~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~ 791 (918)
T 3thx_B 749 K-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLF 791 (918)
T ss_dssp H-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred h-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9 8999999999999999999888887 5555553 3677764
No 112
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.63 E-value=3.8e-18 Score=156.87 Aligned_cols=162 Identities=14% Similarity=0.037 Sum_probs=95.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh--hCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~--g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++++++++.++.-+ .++.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+.+++.+... .....++.+
T Consensus 7 ~~~~~i~tg~~~lD-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (251)
T 2ehv_A 7 QPVRRVKSGIPGFD-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASF 81 (251)
T ss_dssp -CCCEECCSCTTTG-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTT
T ss_pred cccceeecCCHhHH-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHc
Confidence 44556665554321 13333 79999999999999999999999999 7756777888887654321 122334568
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++++|++..+.. ++.++...... ....+..... ...+-++.++...+..-..
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVG---LPSEEKFVLE------------------------DRFNVDNFLRYIYRVVKAI 134 (251)
T ss_dssp TCCHHHHHHTTSEEEEC----------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred CCChHHHhhcCCEEEEEccccccc---cccccceecc------------------------CcccHHHHHHHHHHHHHhh
Confidence 888887644322 44443321110 0000000000 1122344444344444457
Q ss_pred CCCEEEEeCcCCCCC-----HHHHHHHHHHHHHHh-CCCceec
Q 016798 345 NSSVLILDEATSALD-----SRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD-----~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|++++|||||+++| ....+.+.+.++.+. .++|+|.
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~ 177 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTIL 177 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 999999999999997 566666888777765 3677764
No 113
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.62 E-value=2.7e-15 Score=161.83 Aligned_cols=135 Identities=15% Similarity=0.161 Sum_probs=89.4
Q ss_pred CcEEEEeEEEEeCC---CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHH--------hhCCCCCCceEEEcCEeCC
Q 016798 186 GDVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL--------LRLYDPLSGCILVDDHDVQ 254 (382)
Q Consensus 186 ~~i~~~~v~f~y~~---~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll--------~g~~~~~~G~i~~~g~~~~ 254 (382)
+.|.+++..+-+-. +...+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 45888886543322 124689999999999999999999999999999999 55554443221
Q ss_pred CCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 255 NIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 255 ~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
++.+. .+|. .++ +.+.+ ...+|+|+++
T Consensus 702 ----------~~~~d---~i~~-------~ig-------------------~~d~l--------------~~~lStf~~e 728 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-------------------AGDSQ--------------LKGVSTFMAE 728 (934)
T ss_dssp ----------EECCS---EEEE-------ECC------------------------------------------CHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-------------------chhhH--------------HHhHhhhHHH
Confidence 11100 0111 011 11111 1357888888
Q ss_pred HHHHHHHc--cCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHh--CCCceec
Q 016798 335 RLAIARAL--YQNSSVLILDEATSALDSRSELLV-RQAVDRLL--GHHTVRE 381 (382)
Q Consensus 335 rialaRal--l~~~~ililDEpts~LD~~~~~~i-~~~l~~~~--~~~TvI~ 381 (382)
+..+|+++ +.+|+++||||||+|+|+.....+ ...++.+. .++|+|+
T Consensus 729 ~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~ 780 (934)
T 3thx_A 729 MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF 780 (934)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 88888888 999999999999999999888777 44555554 2667664
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.62 E-value=1.1e-17 Score=147.91 Aligned_cols=139 Identities=17% Similarity=0.093 Sum_probs=90.5
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~ 290 (382)
.+++|++++|+|||||||||++++|+|. |..|.|.++|.++.... ..++.++|++|++. ...|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 68899999987653221 11345788888765 4568888874321
Q ss_pred CCCHHHHHHHHHHcChHHHHHhCC--CCcccc--cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHH
Q 016798 291 KIDMERVEHTARTANADEFVRTLP--QGYNTH--IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366 (382)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~i~~lp--~Gldt~--vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i 366 (382)
.. ... .+....++... .+++.. .+.....+|+|++||+++||++.++|+++ +|++..+.+
T Consensus 77 ----~~---~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 77 ----GR---YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp ----HH---HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred ----HH---Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 00 000 00000000000 011100 12234579999999999999999999876 577766666
Q ss_pred HHHHHHH
Q 016798 367 RQAVDRL 373 (382)
Q Consensus 367 ~~~l~~~ 373 (382)
.+.++.+
T Consensus 141 ~~~~~~l 147 (191)
T 1zp6_A 141 HSQFADL 147 (191)
T ss_dssp HHHTTCC
T ss_pred HHHHhcc
Confidence 6666543
No 115
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.61 E-value=8.8e-19 Score=169.72 Aligned_cols=179 Identities=14% Similarity=0.052 Sum_probs=116.1
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH----HHHhcce
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRRHV 265 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~i 265 (382)
+++++++|.. ..+|+++||++++|++++|+|+||||||||++.|+|++.|++|+|.+.|.++..... ...|.++
T Consensus 32 ~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i 109 (337)
T 2qm8_A 32 SRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM 109 (337)
T ss_dssp CSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred eCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence 3466667743 358999999999999999999999999999999999999999999999998754321 2346789
Q ss_pred EEecCCCcccc----------cc---HHHHHc-C---CCC-------CCCCCHHHHHHHHHH-------------cChHH
Q 016798 266 GLVSQDITLFS----------GT---VAENIG-Y---RDL-------MTKIDMERVEHTART-------------ANADE 308 (382)
Q Consensus 266 ~~v~Q~~~lf~----------~t---i~eNi~-~---~~~-------~~~~~~~~~~~~~~~-------------~~l~~ 308 (382)
++++|++.+|. || ++|.+. + +.+ .-..++..+.+.++. ..+.+
T Consensus 110 ~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~ 189 (337)
T 2qm8_A 110 ARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKK 189 (337)
T ss_dssp TTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCT
T ss_pred eeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHH
Confidence 99999999885 21 222220 0 000 000011111100000 00000
Q ss_pred HHHhCCCCcc-cccC-CCCCCCChHHHHHHHHHHHccC------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 309 FVRTLPQGYN-THIG-PRGSSLSGGQRQRLAIARALYQ------NSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 309 ~i~~lp~Gld-t~vg-e~G~~lSgGq~QrialaRall~------~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
.+...|.-+- +.+. .....+|+|++|+++.|++++. +|+++. ||++|......+.+.|.+..
T Consensus 190 ~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 190 GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0111121100 1111 0123578999999999999987 688876 99999999989888887754
No 116
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.61 E-value=1.6e-17 Score=159.63 Aligned_cols=137 Identities=21% Similarity=0.195 Sum_probs=102.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC--------CCCCceEEEcCEeCCCCC---------------HHHHhcceEEe---c
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY--------DPLSGCILVDDHDVQNIR---------------LDSLRRHVGLV---S 269 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v---~ 269 (382)
++++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999987653 34567788888 6
Q ss_pred CCCcc-ccccHHHHHcCCCCCCCCCHHHHHHHH-------HH---------cChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 270 QDITL-FSGTVAENIGYRDLMTKIDMERVEHTA-------RT---------ANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 270 Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~-------~~---------~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
|++.+ |+.++.||..++.+ ..+...+ +. +++.++...+ .++|+||
T Consensus 85 q~~~~~~~~~v~E~~~l~~p------~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------------~~ls~g~ 146 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP------GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------------NQFTIAQ 146 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH------HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------------HHCHHHH
T ss_pred hcCCCCCCEEEEeCCCCCCH------HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------------hhchHHH
Confidence 88774 67899999987653 2221111 11 1121222221 1589999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||...+++++.+|+++ ||| ..+.+.++++.++.|++.
T Consensus 147 ~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~ 184 (318)
T 1nij_A 147 SQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYT 184 (318)
T ss_dssp HHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEE
T ss_pred HHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEE
Confidence 99999999999999987 888 677888888777777763
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.59 E-value=1.8e-16 Score=144.28 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=84.4
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cH----HHH
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TV----AEN 282 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~eN 282 (382)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... ..++.++|++|++..|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 68999998876543 235679999999998865 55 577
Q ss_pred HcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHH
Q 016798 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362 (382)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~ 362 (382)
+.+.......+.+++. .++..++++||| ||+.+
T Consensus 87 ~~~~~~~yg~~~~~v~------------------------------------------~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREAIE------------------------------------------QVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHHHH------------------------------------------HHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHHHH------------------------------------------HHHhcCCeEEEE-----ECHHH
Confidence 6543211111222222 222336999999 99999
Q ss_pred HHHHHHHHHHHhCCCceec
Q 016798 363 ELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 363 ~~~i~~~l~~~~~~~TvI~ 381 (382)
..++.+.+. ++.|+++
T Consensus 120 ~~~i~~~l~---~~~tI~i 135 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFI 135 (219)
T ss_dssp HHHHHHHCT---TCEEEEE
T ss_pred HHHHHHHcc---CCEEEEE
Confidence 999988775 4566653
No 118
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.58 E-value=1.2e-15 Score=143.52 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=95.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHc-CCCCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG-YRDLM 289 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~-~~~~~ 289 (382)
.+++|++++|+||||||||||++.+++... .|.+. .|.+... +..+.|++.+... ..+.+++. ++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 478999999999999999999999998764 46663 3443321 3457787766543 22322321 221
Q ss_pred CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC--CCCHHHH---H
Q 016798 290 TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS--ALDSRSE---L 364 (382)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts--~LD~~~~---~ 364 (382)
..+.......++... +....+.....||+||+|++ |+++++|+++|+||||+ ++|..+. .
T Consensus 93 -~~~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 93 -HLSAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp -TSCHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred -hcChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 123333333333332 22233455678999998865 68889999999999999 9998544 7
Q ss_pred HHHHHHHHHh--CCCceec
Q 016798 365 LVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 365 ~i~~~l~~~~--~~~TvI~ 381 (382)
.+.+.|+++. .++|+|.
T Consensus 158 ~~~~~L~~l~~~~g~tvi~ 176 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVF 176 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 7778887774 3677764
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.57 E-value=9.3e-17 Score=148.31 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=96.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---hCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHcCC---
Q 016798 214 AGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYR--- 286 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~--- 286 (382)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.+++. ++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999998876532 1334456677788776654 888888531
Q ss_pred ---CC----CCCCCHHHHHHHHHHcChH--HHHHhCCC-CcccccCCCCCCCChHHHHHHHHHHHc-cCCCCEEEEe---
Q 016798 287 ---DL----MTKIDMERVEHTARTANAD--EFVRTLPQ-GYNTHIGPRGSSLSGGQRQRLAIARAL-YQNSSVLILD--- 352 (382)
Q Consensus 287 ---~~----~~~~~~~~~~~~~~~~~l~--~~i~~lp~-Gldt~vge~G~~lSgGq~QrialaRal-l~~~~ililD--- 352 (382)
.. ....+.++..........+ -+++.-|+ .++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 00 0001222221111101100 00000000 011111223457888 66 888 9999999999
Q ss_pred -CcCCCCCHHHHHHHHHHHHHHh
Q 016798 353 -EATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 353 -Epts~LD~~~~~~i~~~l~~~~ 374 (382)
|||+++|..++..+.+.++++.
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999988888887653
No 120
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.56 E-value=1.2e-16 Score=138.08 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=71.5
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecC
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 270 (382)
++++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 345666753 35899999999999999999999999999999999999 9999999999887421 1112 27999
Q ss_pred CCccccccHHHHHc
Q 016798 271 DITLFSGTVAENIG 284 (382)
Q Consensus 271 ~~~lf~~ti~eNi~ 284 (382)
++.+|.-|+.||+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99999779999994
No 121
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.55 E-value=4.9e-18 Score=168.67 Aligned_cols=130 Identities=20% Similarity=0.197 Sum_probs=91.1
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHHHHhcceEEec---------C
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRRHVGLVS---------Q 270 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q 270 (382)
+|+++ + .++|++++|+|||||||||++++|+|+++|++|+|.+.+.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45666 4 378999999999999999999999999999999999998877321 1123345566654 9
Q ss_pred CCccc--c-----ccHHHHHcCCCC-------CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 271 DITLF--S-----GTVAENIGYRDL-------MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 271 ~~~lf--~-----~ti~eNi~~~~~-------~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+|.++ . .|+++|+.++.. .+..+..+....+...++.++. ....|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 99863 2 388898864311 0111223333344444443332 235899999999
Q ss_pred HHHHHccCCCCEEE
Q 016798 337 AIARALYQNSSVLI 350 (382)
Q Consensus 337 alaRall~~~~ili 350 (382)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999875
No 122
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.54 E-value=5.5e-15 Score=126.18 Aligned_cols=66 Identities=30% Similarity=0.284 Sum_probs=56.3
Q ss_pred Cccccc-----CCCCCCCChHHHHHHHHH------HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 316 GYNTHI-----GPRGSSLSGGQRQRLAIA------RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 316 Gldt~v-----ge~G~~lSgGq~Qriala------Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++++.+ .....+||||||||++|| ||++.+|+++||||||++||+.+...+.+.++++.+ ++|+|+
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 118 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 118 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEE
Confidence 566654 234679999999999876 999999999999999999999999999999998753 677764
No 123
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.51 E-value=1.1e-14 Score=155.26 Aligned_cols=140 Identities=17% Similarity=0.199 Sum_probs=88.0
Q ss_pred CcEEEEeEEEEeCC-----CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEEcCEeCCCCCHH
Q 016798 186 GDVKFCNISFKYAD-----NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 186 ~~i~~~~v~f~y~~-----~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~~g~~~~~~~~~ 259 (382)
+.|.+++.. +|- ++..+++|+||+ ++|++++|+|||||||||++|+++|+..+ ..|. .+ +.
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~v---pa- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YV---PA- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CB---SS-
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------cc---ch-
Confidence 357777753 331 234689999999 99999999999999999999999997532 2231 11 10
Q ss_pred HHhcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
-+..+++++| +|.. ++.||+..+ + ..+|++++ +++.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------~--------stf~~e~~-~~~~ 679 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG------------------------------R--------STFMVEMT-ETAN 679 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-------------------------------------------------CHHHHH-HHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh------------------------------h--------hhhhHHHH-HHHH
Confidence 1234666655 4432 444444211 0 23566665 4555
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHhC--CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLV-RQAVDRLLG--HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i-~~~l~~~~~--~~TvI~ 381 (382)
+...+.+|+++||||||+|+|+.....+ .+.++.+.+ ++|+|+
T Consensus 680 il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~ 725 (800)
T 1wb9_A 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF 725 (800)
T ss_dssp HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEE
Confidence 5556899999999999999998655554 556666543 566663
No 124
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.51 E-value=1.6e-15 Score=147.21 Aligned_cols=123 Identities=20% Similarity=0.135 Sum_probs=82.4
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-CCCceEEEc-CEeCCCCCHHHHhcceEEecCCCccccc-cH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVD-DHDVQNIRLDSLRRHVGLVSQDITLFSG-TV 279 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 279 (382)
.-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|++.+++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357888875 4899999999999999999999999999 999999987 76542 2345679999999998866 89
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 280 ~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
+|+-.. ..+.+++.+. +.++++.+ |+.......-.++| ||+||++||++++
T Consensus 279 ~e~~l~-----~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGLW-----HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCCC-----CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhhc-----CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 986321 2344443221 22333332 44444444557899 9999999999864
No 125
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.50 E-value=4.4e-15 Score=134.51 Aligned_cols=143 Identities=16% Similarity=0.112 Sum_probs=96.8
Q ss_pred CccceeeE-EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc---ceEEecCCCcccccc
Q 016798 203 LVLDQLNL-HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR---HVGLVSQDITLFSGT 278 (382)
Q Consensus 203 ~~l~~isl-~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~lf~~t 278 (382)
+.|+++.. .+++|++++|+||||||||||++.+++...+.+|.|.+.+.+. +...+++ .+++.+|+..
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~----- 81 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI----- 81 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB-----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh-----
Confidence 47888888 8999999999999999999999999999888888888865443 3333322 2333333221
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcCC
Q 016798 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATS 356 (382)
Q Consensus 279 i~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~--ililDEpts 356 (382)
.+++..... ... . .. +. .+- ...|.+|.++...+.+...+|+ ++|+||||+
T Consensus 82 -~~~~~~~~~---~~~-~-------------~~--~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 82 -EKKLIIIDA---LMK-E-------------KE--DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp -TTTEEEEEC---CC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred -hCCEEEEec---ccc-c-------------cC--ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 011111100 000 0 00 00 011 2348999988888877778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHh--CCCcee
Q 016798 357 AL--DSRSELLVRQAVDRLL--GHHTVR 380 (382)
Q Consensus 357 ~L--D~~~~~~i~~~l~~~~--~~~TvI 380 (382)
.+ |+.....+.+.|+++. .+.|+|
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi 162 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIY 162 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEE
Confidence 88 9988888999988874 356665
No 126
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.48 E-value=3.6e-15 Score=160.23 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=86.9
Q ss_pred HHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHH
Q 016798 231 LAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310 (382)
Q Consensus 231 l~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i 310 (382)
+..|..+.+.|..|+|.++|.++.++....+.+.++++.+ +.+..... .-.....+..+. ..+++
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~-~~~~~~~~~~~~--~~~~L 448 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTERER-EIVGELLKEIEK--RLEFL 448 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTT-TTHHHHHHHHHH--HHHHH
T ss_pred chhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHH-HHHHhhHHHHHH--HHHHH
Confidence 3445567788999999999999865333233333333221 11111000 001111111111 12334
Q ss_pred HhCCCCcccc-cCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 311 RTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 311 ~~lp~Gldt~-vge~G~~lSgGq~QrialaRall~~~~--ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
..+ |++.. ......+||||||||++|||||..+|+ +|||||||++||+.....+.+.|+++.+ ++|+|.
T Consensus 449 ~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 449 VDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 443 55432 456678999999999999999999887 9999999999999999999999999864 678764
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.48 E-value=1.7e-14 Score=144.82 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=68.9
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----HHH--HhcceEEecCCCccc-cc
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDS--LRRHVGLVSQDITLF-SG 277 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~--~r~~i~~v~Q~~~lf-~~ 277 (382)
-+++||++++|++++|+|+||||||||+++|+|++.|++|+|.++|.|..... +.. .|+.|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887765321 122 367899999998866 45
Q ss_pred cHHHHHcCC
Q 016798 278 TVAENIGYR 286 (382)
Q Consensus 278 ti~eNi~~~ 286 (382)
|+++|+.++
T Consensus 363 tV~e~l~~a 371 (503)
T 2yhs_A 363 VIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899999654
No 128
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.47 E-value=6.2e-15 Score=157.18 Aligned_cols=146 Identities=17% Similarity=0.206 Sum_probs=100.8
Q ss_pred CCCCcHHHHHHHHhhC---------CCCCCceEEEcCEeCCC---CCHHHHhcceEEecCCCccccccHHHHHcCCCCCC
Q 016798 223 PSGGGKSTLAKLLLRL---------YDPLSGCILVDDHDVQN---IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (382)
Q Consensus 223 ~sGsGKSTl~~ll~g~---------~~~~~G~i~~~g~~~~~---~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~ 290 (382)
.|..||+++.+.+... |.|..|+|.++|.++.+ ++..++...+.-++|++.... + +...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--- 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--- 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS---
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch---
Confidence 4667899998887663 34577999999999987 555555555555555554222 2 1222221
Q ss_pred CCCHHHHH-----HHHHHcChHHHHHhCCCCcccc-cCCCCCCCChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHH
Q 016798 291 KIDMERVE-----HTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRS 362 (382)
Q Consensus 291 ~~~~~~~~-----~~~~~~~l~~~i~~lp~Gldt~-vge~G~~lSgGq~QrialaRall~~~--~ililDEpts~LD~~~ 362 (382)
...++. +..++. +.+..+ |++.. ++....+|||||||||+|||+|..+| ++|||||||++||+..
T Consensus 344 --~~~~i~~~i~~ei~~rl---~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~ 416 (842)
T 2vf7_A 344 --EQAIALQRMAADLVKRL---DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD 416 (842)
T ss_dssp --SHHHHHHHHHHHHHHHH---HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG
T ss_pred --hhHHHHHHHHHHHHHHH---HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH
Confidence 122221 122221 134443 55543 56777899999999999999999999 4999999999999999
Q ss_pred HHHHHHHHHHHhC-CCceec
Q 016798 363 ELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 363 ~~~i~~~l~~~~~-~~TvI~ 381 (382)
.+.+.+.|+++.. +.|+|.
T Consensus 417 ~~~L~~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 417 TEALLSALENLKRGGNSLFV 436 (842)
T ss_dssp HHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 9999999998865 677763
No 129
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.45 E-value=8.6e-15 Score=139.55 Aligned_cols=117 Identities=13% Similarity=0.038 Sum_probs=82.5
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE---cCEeCCCCCHHHHh-cceEEecCCCccc------cccH
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLR-RHVGLVSQDITLF------SGTV 279 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r-~~i~~v~Q~~~lf------~~ti 279 (382)
+++.+|++++++||||||||||+++|+ +.+|++|+|.+ +|.++..... ..+ +.++|++|+|.+. ..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 355679999999999999999999999 99999999999 9988765432 222 3699999999653 3478
Q ss_pred HHHH--cCC---------C--CCCCCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 280 AENI--GYR---------D--LMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 280 ~eNi--~~~---------~--~~~~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
||+ .|+ . .......+.+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 443 1 011223457888888888865 444443 578998889999987
No 130
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.44 E-value=2.2e-16 Score=148.58 Aligned_cols=143 Identities=20% Similarity=0.178 Sum_probs=103.5
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCC-cccc-ccHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI-TLFS-GTVA 280 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~-~ti~ 280 (382)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++.+......++.+++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999977 79999999887665566677899999986 3444 3778
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC----
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS---- 356 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts---- 356 (382)
||+....+.. ...+. . ........+ -..|||||+||..+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r--~~~~~-~-----~~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gR 168 (274)
T 2x8a_A 110 DEVDALCPRR--SDRET-G-----ASVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGR 168 (274)
T ss_dssp ETCTTTCC-----------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTS
T ss_pred ehhhhhhccc--CCCcc-h-----HHHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCccc
Confidence 8886533211 11110 0 011112221 2468999999999999999999975 99874
Q ss_pred --------CCCHHHHHHHHHHH
Q 016798 357 --------ALDSRSELLVRQAV 370 (382)
Q Consensus 357 --------~LD~~~~~~i~~~l 370 (382)
--|.+.+..|++.+
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHH
T ss_pred CCeEEEeCCcCHHHHHHHHHHH
Confidence 23666776666654
No 131
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.44 E-value=1.3e-13 Score=120.63 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=50.5
Q ss_pred CCCCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 325 GSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 325 G~~lSgGq~QrialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
...||||||||++|||+++ ++|+++||||||++||+.+...+.+.|+++.++.++|
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~i 121 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFI 121 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEE
Confidence 4689999999999999996 5679999999999999999999999999987766655
No 132
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.43 E-value=1.6e-13 Score=123.43 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=78.8
Q ss_pred CccceeeE-EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHH
Q 016798 203 LVLDQLNL-HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (382)
Q Consensus 203 ~~l~~isl-~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (382)
+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+... +++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~------------------~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPER------------------LVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHH------------------HHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHH------------------HHH
Confidence 35677765 799999999999999999999999999 3333333333221 111221 222
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH--HHHHHHHHHHccCC-CCEEEEeCcCCCC
Q 016798 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG--QRQRLAIARALYQN-SSVLILDEATSAL 358 (382)
Q Consensus 282 Ni~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG--q~QrialaRall~~-~~ililDEpts~L 358 (382)
..... ..+.++ +.+.+. + ...|++ |+|+++.+|+++++ |+++|+||||+.+
T Consensus 65 ~~~~~----~~~~~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 65 MAETR----GLNPEE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHTT----TCCHHH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHhc----CCChHH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 11100 112222 111110 1 123344 46789999999986 9999999999999
Q ss_pred CHHHH--------HHHHHHHHHHhC--CCcee
Q 016798 359 DSRSE--------LLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 359 D~~~~--------~~i~~~l~~~~~--~~TvI 380 (382)
|...+ ..+.+.|+++.+ +.|+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi 150 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVI 150 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 97432 345555666543 56665
No 133
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.42 E-value=1.3e-15 Score=145.63 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=74.6
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEe-------------------eCCCEEEEECCCCCcHHHHHHHHhhCCC--CCCc
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHI-------------------RAGETVALIGPSGGGKSTLAKLLLRLYD--PLSG 244 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i-------------------~~G~~~aivG~sGsGKSTl~~ll~g~~~--~~~G 244 (382)
+.|+++||++.|. ++++++|+.+ ++|+++||+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4688999999993 5899999988 8999999999999999999999999998 9999
Q ss_pred eEEE---cCEeCCCCCHHHHhcceEEecCCCcccc-ccHHHHHc
Q 016798 245 CILV---DDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIG 284 (382)
Q Consensus 245 ~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~ 284 (382)
+|.+ ||.... . ..++.++++ |+..++. -|+.+|+.
T Consensus 112 ~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~ 150 (308)
T 1sq5_A 112 RVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVK 150 (308)
T ss_dssp CEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHH
T ss_pred eEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHH
Confidence 9999 887742 2 345678888 7766543 37777763
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.41 E-value=1.4e-13 Score=132.41 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=84.6
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH----HHhc--ceEEecCCCccccc-cHHHHH
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD----SLRR--HVGLVSQDITLFSG-TVAENI 283 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~----~~r~--~i~~v~Q~~~lf~~-ti~eNi 283 (382)
..++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .+++ .+.+++|++.+++. |++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998765533 2333 35699999988865 899998
Q ss_pred cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC
Q 016798 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts 356 (382)
.++.. .... .+ -+||. |... .-..=.++.-.++|++..++++++||.+|.
T Consensus 205 ~~~~~-------------~~~d---~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 205 QHAKA-------------RGID---VV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp HHHHH-------------HTCS---EE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred HHHHh-------------ccch---hh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 54310 0000 00 01221 1100 001122344458999999999999996654
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=3.4e-13 Score=130.40 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=71.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhh-CCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc-cccHHHHHcCCCCCCCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID 293 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~ 293 (382)
..+.|+||+|+||||+++++++ ++.|+.|.+.++|.+..... ..+..+++++|.+++. +.+- .+. .+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~----~~ 105 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MGN----ND 105 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-------------CC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cCC----cc
Confidence 3499999999999999999999 89999999999998765432 2367799999988753 2110 010 11
Q ss_pred HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 294 MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 294 ~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
...+.+.++.+ .... +++..+ .||| +..+|+++|+|||++ ||..+...+.+.+++.
T Consensus 106 ~~~~~~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 106 RIVIQELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp HHHHHHHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 12233333221 1111 122111 4566 788999999999999 9999999999999987
Q ss_pred hCCCcee
Q 016798 374 LGHHTVR 380 (382)
Q Consensus 374 ~~~~TvI 380 (382)
.++.++|
T Consensus 162 ~~~~~~I 168 (354)
T 1sxj_E 162 SKNIRLI 168 (354)
T ss_dssp TTTEEEE
T ss_pred cCCCEEE
Confidence 6655554
No 136
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.37 E-value=4.8e-13 Score=122.07 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=67.5
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhh--CCCC-----CCceEEEcCEeCCC-CCHHHHhcceEEecCCCccccccHHHH
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLR--LYDP-----LSGCILVDDHDVQN-IRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+... -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 57788888765211 1122334456655543 4566
Q ss_pred HcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHH
Q 016798 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (382)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~ 361 (382)
+.+..+ .+.++..+.++. +.+.+. -.+|+++++||||+.+|..
T Consensus 93 ~~~~~~---~~~~~~~~~~~~--~~~~~~-------------------------------~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 93 VAYARA---FNTDHQTQLLYQ--ASAMMV-------------------------------ESRYALLIVDSATALYRTD 135 (243)
T ss_dssp EEEEEC---CSHHHHHHHHHH--HHHHHH-------------------------------HSCEEEEEEETSSGGGC--
T ss_pred eEEEec---CCHHHHHHHHHH--HHHHHh-------------------------------cCCceEEEEeCchHHHHHH
Confidence 654322 122332222111 111111 1689999999999999985
No 137
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.35 E-value=1.2e-13 Score=147.97 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=57.4
Q ss_pred Ccccc-cCCCCCCCChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 316 GYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 316 Gldt~-vge~G~~lSgGq~QrialaRall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++.. +.....+|||||||||+||++|..+| ++|||||||++||+.....+.+.|+++.+ +.|+|.
T Consensus 492 GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIv 561 (972)
T 2r6f_A 492 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 561 (972)
T ss_dssp TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 55542 56667899999999999999999985 99999999999999999999999999874 678774
No 138
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.35 E-value=1.8e-13 Score=130.31 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=70.5
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE---cCEeCCCCCHHHHhcceEEecCCCc-------------
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLRRHVGLVSQDIT------------- 273 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~------------- 273 (382)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 557789999999999999999999999999999999999 9988865442111246999999985
Q ss_pred ---cccc-cHHHHHcCCCCC-CCCCHHHHHHHHHHcCh-HHHHHhCC
Q 016798 274 ---LFSG-TVAENIGYRDLM-TKIDMERVEHTARTANA-DEFVRTLP 314 (382)
Q Consensus 274 ---lf~~-ti~eNi~~~~~~-~~~~~~~~~~~~~~~~l-~~~i~~lp 314 (382)
+|+. |+ ||+.++... .....+.+.++++..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3544 78 999875321 12234678899999999 46666655
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.35 E-value=2.4e-15 Score=153.07 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=100.9
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-ccHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAE 281 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~e 281 (382)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. +.+++++.|...... .|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46889999999999999999999999999999999999999999999865222221 345777877765221 26776
Q ss_pred HHcCC---CCC----CCCCHHHHHHHHHHcC-------------hHHHHHhC---CCCcccccC-------CCCCCCChH
Q 016798 282 NIGYR---DLM----TKIDMERVEHTARTAN-------------ADEFVRTL---PQGYNTHIG-------PRGSSLSGG 331 (382)
Q Consensus 282 Ni~~~---~~~----~~~~~~~~~~~~~~~~-------------l~~~i~~l---p~Gldt~vg-------e~G~~lSgG 331 (382)
++... +|+ .+....+...+++.+. ..+.+.++ |.|....+. .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 66422 110 0122233444443321 23333332 233332222 123467999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
|+||.++|.+ | |++||+.+.+.+.+.+.++.+ ++|++
T Consensus 405 ~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii 442 (511)
T 2oap_1 405 TRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHI 442 (511)
T ss_dssp CEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEE
T ss_pred CceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEE
Confidence 9999877521 5 788887665544444444432 44543
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.33 E-value=9.2e-13 Score=112.46 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=34.0
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc--eEEEcC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDD 250 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G--~i~~~g 250 (382)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+.+++
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~ 72 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDA 72 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEET
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcH
Confidence 45665 8999999999999999999999999987 46 444444
No 141
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.32 E-value=4.7e-12 Score=136.14 Aligned_cols=102 Identities=18% Similarity=0.306 Sum_probs=73.8
Q ss_pred cccccHHHHHcCCCCCCCCCHHH--H-----HHHHHHcChHHHHHhCCCCcccc-cCCCCCCCChHHHHHHHHHHHccCC
Q 016798 274 LFSGTVAENIGYRDLMTKIDMER--V-----EHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 274 lf~~ti~eNi~~~~~~~~~~~~~--~-----~~~~~~~~l~~~i~~lp~Gldt~-vge~G~~lSgGq~QrialaRall~~ 345 (382)
++..||.|++.|.... ..+.++ + .+..+.. +++..+ |++.. +.....+|||||||||+||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 5677999999885432 234311 1 1111221 223332 55543 5667789999999999999999999
Q ss_pred --CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 346 --SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 346 --~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++|||||||++||+.....+.+.|+++. .+.|+|.
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIv 578 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIV 578 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 58999999999999999999999999886 4678774
No 142
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.31 E-value=1.9e-12 Score=113.24 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.7
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G 244 (382)
++++++|+.++|+||+|+|||||++++++.+.|.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 567789999999999999999999999999977666
No 143
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.30 E-value=1.8e-12 Score=115.39 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=97.3
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHcCCC
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRD 287 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~ 287 (382)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++..|.. +..+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999974 588888777665544557789999999998865 6666653211
Q ss_pred ----CCCCCCHHHHHHHHHHc----------ChHHHHHhCCCCc------------ccccCCCCCCCChHHHHHHHHHHH
Q 016798 288 ----LMTKIDMERVEHTARTA----------NADEFVRTLPQGY------------NTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 288 ----~~~~~~~~~~~~~~~~~----------~l~~~i~~lp~Gl------------dt~vge~G~~lSgGq~QrialaRa 341 (382)
.....+.+.+.+.++.. ++.......|+.. ...+.+++..-....++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 00112234555554431 2333444444331 112234455445667888888876
Q ss_pred cc---CCCCEEEEeCcCCCCCHH-HHHHHHHHHHHH
Q 016798 342 LY---QNSSVLILDEATSALDSR-SELLVRQAVDRL 373 (382)
Q Consensus 342 ll---~~~~ililDEpts~LD~~-~~~~i~~~l~~~ 373 (382)
.. ...+++|.++ |.+ +..++.+.++..
T Consensus 157 ~~~~~~~~d~vi~n~-----~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND-----NFDQAVQNLIHIISAE 187 (205)
T ss_dssp HHTTGGGCSEEEECS-----SHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCEEEECC-----CHHHHHHHHHHHHHHH
Confidence 54 4568777755 332 455666666543
No 144
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.27 E-value=5.4e-14 Score=127.46 Aligned_cols=129 Identities=24% Similarity=0.251 Sum_probs=99.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC---CCCCceEEE--------cCEeCCC-CCHHHHhcceEEecCCC------ccc
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY---DPLSGCILV--------DDHDVQN-IRLDSLRRHVGLVSQDI------TLF 275 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~lf 275 (382)
.+.+++|+|++||||||++++|.+.+ .++.|++.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 678899987 7877653 44567888999999986 345
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccC-CCCCCCChHHHHHHHHHHHccCCCCEEEEeCc
Q 016798 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG-PRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (382)
Q Consensus 276 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vg-e~G~~lSgGq~QrialaRall~~~~ililDEp 354 (382)
..++.+++. ++++..++..+..++.+...+.+..+.+. ++|.-++|+ .++++++++++++|+.++
T Consensus 84 ~~~v~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~ 149 (227)
T 1cke_A 84 GEDVSGEIR---------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDA 149 (227)
T ss_dssp TEECHHHHT---------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEEC
T ss_pred CeeCchhhC---------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeC
Confidence 557777762 46677888888888888776666655553 456777876 567788899999999887
Q ss_pred CC
Q 016798 355 TS 356 (382)
Q Consensus 355 ts 356 (382)
+.
T Consensus 150 ~~ 151 (227)
T 1cke_A 150 SS 151 (227)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.27 E-value=4e-13 Score=133.14 Aligned_cols=151 Identities=18% Similarity=0.139 Sum_probs=91.0
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHc
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG 284 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~ 284 (382)
-++++|+++.|+.++|||+||||||||++.|+|..+ .+.+.+... +...+++|.++.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 334444332 3445777777651 1223444332
Q ss_pred CCCC---CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHH
Q 016798 285 YRDL---MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (382)
Q Consensus 285 ~~~~---~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~ 361 (382)
+... ....... ..+..+.+. ..+.. +|-. .+.-.+||+|++|+.++||++..+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--VLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--EEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--hhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2110 0011121 111111111 01111 1100 122357999999999999999999999999 899987
Q ss_pred HHHHHHHHHHHH-hC-CCcee
Q 016798 362 SELLVRQAVDRL-LG-HHTVR 380 (382)
Q Consensus 362 ~~~~i~~~l~~~-~~-~~TvI 380 (382)
.. ...+.+.+. .+ +.+++
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi 302 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVL 302 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEE
T ss_pred hH-HHHHHHHHHHHhcCCeEE
Confidence 66 333444333 22 34554
No 146
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.26 E-value=2.9e-12 Score=121.63 Aligned_cols=137 Identities=16% Similarity=0.088 Sum_probs=94.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
+.++++++.|+.. . ++++|+ +|++++++|++|+||||++..|++++.+..|+|.+.+.|...-...
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-------- 142 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------
Confidence 4455666777532 1 678888 9999999999999999999999999999999999987776421100
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
+. +....+.. |++-.- .+..-+..+.+|.+++++...+++
T Consensus 143 -------------~q--------------l~~~~~~~-----------~l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D 182 (295)
T 1ls1_A 143 -------------EQ--------------LRLLGEKV-----------GVPVLE--VMDGESPESIRRRVEEKARLEARD 182 (295)
T ss_dssp -------------HH--------------HHHHHHHH-----------TCCEEE--CCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred -------------HH--------------HHHhcccC-----------CeEEEE--cCCCCCHHHHHHHHHHHHHhCCCC
Confidence 00 00001111 111110 011223445678999999889999
Q ss_pred EEEEeCc-CCCCCHHHHHHHHHHHHHHhCCCc
Q 016798 348 VLILDEA-TSALDSRSELLVRQAVDRLLGHHT 378 (382)
Q Consensus 348 ililDEp-ts~LD~~~~~~i~~~l~~~~~~~T 378 (382)
++|+||| ++++|......+.+..+....+.+
T Consensus 183 ~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~ 214 (295)
T 1ls1_A 183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEV 214 (295)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEE
T ss_pred EEEEeCCCCccccHHHHHHHHHHhhhcCCCEE
Confidence 9999999 999999888777777766655444
No 147
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.26 E-value=2.6e-12 Score=129.16 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=55.3
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~ 257 (382)
.+.++++.. ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 345555432 1479999999999 999999999999999999999999999999999999887554
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.24 E-value=2.2e-12 Score=122.99 Aligned_cols=98 Identities=23% Similarity=0.337 Sum_probs=72.2
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD 287 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~ 287 (382)
++++.++|++++++|+|||||||+++.|++.+.+.+|+|.+.+.|... . ...+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r-------~--------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-------A--------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-------H--------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc-------H--------------HHHH------
Confidence 355567899999999999999999999999999999999987766421 0 0111
Q ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH---HHHHHccCCCCEEEEeCcCC
Q 016798 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL---AIARALYQNSSVLILDEATS 356 (382)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri---alaRall~~~~ililDEpts 356 (382)
++...++.. |++. + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 150 --------qL~~~~~~~-----------gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 150 --------QLKIWGERV-----------GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp --------HHHHHHHHH-----------TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred --------HHHHHHHHc-----------CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 121222221 2221 1 24579999999 99999999999999999975
No 149
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.20 E-value=9.1e-13 Score=125.46 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=57.3
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE---cCEeCCCCCHHHHhcceEEecCCCcccc-----ccHHH
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLRRHVGLVSQDITLFS-----GTVAE 281 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-----~ti~e 281 (382)
+++.+|++++|+||||+|||||+++|+|+.+|..|+|.+ +|.+..... ..++..+++++|+|.++. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 557799999999999999999999999999999999999 887765432 222223899999998764 478 8
Q ss_pred HHc--CC------------C-CCCCCCHHHHHHHHHHcChHH
Q 016798 282 NIG--YR------------D-LMTKIDMERVEHTARTANADE 308 (382)
Q Consensus 282 Ni~--~~------------~-~~~~~~~~~~~~~~~~~~l~~ 308 (382)
|+. |. + .........+.++++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 883 21 0 011123456778888887754
No 150
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.19 E-value=2.1e-13 Score=124.49 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=23.3
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh-hCCCC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLYDP 241 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~-g~~~~ 241 (382)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99943
No 151
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.19 E-value=1.2e-11 Score=121.96 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=77.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHH--hhCCCCCCc-----eEEEcCEeCCC-CCHHHHhcceEEecCCCccccccHHHH
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLL--LRLYDPLSG-----CILVDDHDVQN-IRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll--~g~~~~~~G-----~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
-|++|++++|+||||||||||++.+ .+..+|+.| .+++++.+... .....+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 567766444 78888865311 112233455666544 67788
Q ss_pred HcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc--cCCCCEEEEeCcCCCCCH
Q 016798 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEATSALDS 360 (382)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal--l~~~~ililDEpts~LD~ 360 (382)
+.+... .+.++..+.++ -++.+ -.+|+++++||||+.+|.
T Consensus 247 i~~~~~---~~~~~~~~~l~-----------------------------------~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 247 VAYARA---YNADHQLRLLD-----------------------------------AAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp EEEEEC---CSHHHHHHHHH-----------------------------------HHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred EEEecc---CChHHHHHHHH-----------------------------------HHHHHHHhcCCceEEecchhhhCch
Confidence 776542 12222222111 11111 247999999999999997
Q ss_pred HHH------------HHHHHHHHHHhC--CCceec
Q 016798 361 RSE------------LLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 361 ~~~------------~~i~~~l~~~~~--~~TvI~ 381 (382)
+.. ..+.+.|+++.+ +.|+|.
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl 323 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV 323 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 533 456666766643 566653
No 152
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.17 E-value=7.3e-12 Score=110.42 Aligned_cols=127 Identities=21% Similarity=0.389 Sum_probs=59.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC-------------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHH
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD-------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (382)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.+...+ .++..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 677775 67666555555444432 2444444555555
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHc----------ChHHHHHh--------------CCCCcccccCCCCCCCChHHHHHHH
Q 016798 282 NIGYRDLMTKIDMERVEHTARTA----------NADEFVRT--------------LPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 282 Ni~~~~~~~~~~~~~~~~~~~~~----------~l~~~i~~--------------lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
|+ +|. +.+.+.+.++.- ++.. +.. -++-+...+.++|..-....+||++
T Consensus 76 ~~-yg~-----~~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~ 148 (186)
T 3a00_A 76 NY-YGS-----TVASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLS 148 (186)
T ss_dssp EE-EEE-----EHHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC-----------------------
T ss_pred ee-ccC-----cHHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 43 332 234444444431 1111 222 2256667777888887788899999
Q ss_pred HHHHcc-----CCCCEEEEeC
Q 016798 338 IARALY-----QNSSVLILDE 353 (382)
Q Consensus 338 laRall-----~~~~ililDE 353 (382)
-|+.-+ +.++.+|..+
T Consensus 149 ~~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 149 AAQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp ----------CCCCSEEEECS
T ss_pred HHHHHHHhhcccCCcEEEECc
Confidence 999765 5678877765
No 153
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.13 E-value=3.5e-12 Score=118.18 Aligned_cols=72 Identities=28% Similarity=0.299 Sum_probs=62.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---hCCCCCCceEE--------EcCEeCC-CCCHHHHhcceEEecCCC------cc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCIL--------VDDHDVQ-NIRLDSLRRHVGLVSQDI------TL 274 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~---g~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~~------~l 274 (382)
++|++++|+|||||||||++++|+ |++.|++|.+. .+|.++. ......+++.+++++|++ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 456778899999999653 45
Q ss_pred ccccHHHHHc
Q 016798 275 FSGTVAENIG 284 (382)
Q Consensus 275 f~~ti~eNi~ 284 (382)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 6668888873
No 154
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.13 E-value=5.3e-13 Score=117.69 Aligned_cols=135 Identities=16% Similarity=0.060 Sum_probs=80.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc-cccHHHHHcCCCCCCCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID 293 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~ 293 (382)
|++++|+|||||||||+++.|++ |.+|.+.++|.++... ...++++|....+ ..++++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999998 6789999988655321 2457777766433 34777776321
Q ss_pred HHHHHHHHHHcChHHHHHhCCCCcccccCCC----CCCC--ChHHHHHHHHHH------HccCCCCEEEEeCcCCCCCHH
Q 016798 294 MERVEHTARTANADEFVRTLPQGYNTHIGPR----GSSL--SGGQRQRLAIAR------ALYQNSSVLILDEATSALDSR 361 (382)
Q Consensus 294 ~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~----G~~l--SgGq~QrialaR------all~~~~ililDEpts~LD~~ 361 (382)
...... .+.. . =++...+.. -..+ |+|++|++.++. +++++|+...+|+ ++|+.
T Consensus 66 ---~~~~~~-~~~~-~------ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~ 131 (189)
T 2bdt_A 66 ---TVNFLL-AQND-V------VLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGER 131 (189)
T ss_dssp ---HHHHHH-TTCE-E------EEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGG
T ss_pred ---HHHHHh-cCCc-E------EEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHH
Confidence 000000 0000 0 011110100 0123 778777877777 7788887777774 78887
Q ss_pred HHHHHHHHHHHHhC-CCcee
Q 016798 362 SELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 362 ~~~~i~~~l~~~~~-~~TvI 380 (382)
..+. .+.++.+.. +.|+|
T Consensus 132 ~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 132 CLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp GGHH-HHHHHHTTCCTTSEE
T ss_pred HHHH-HHHHhhcCCCccEEE
Confidence 7766 777776643 35554
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.12 E-value=3.9e-14 Score=136.74 Aligned_cols=91 Identities=27% Similarity=0.293 Sum_probs=67.7
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCC-------CEEEEECCCCCcHHHHHHHHhhCC----CCCCceEEEcCEeCCCCCHH
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAG-------ETVALIGPSGGGKSTLAKLLLRLY----DPLSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G-------~~~aivG~sGsGKSTl~~ll~g~~----~~~~G~i~~~g~~~~~~~~~ 259 (382)
++++..|+. ..+++++++.+++| +.++|+||+|+|||||+++++|.+ .|.+|.+..++.++..+...
T Consensus 22 ~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 22 KSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred ccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 344445543 35899999999887 899999999999999999999998 67788877766554321111
Q ss_pred HHhcceEEecCCCccccccHHHHHc
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIG 284 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~ 284 (382)
..+..|.+++|...++. ++.|++.
T Consensus 100 ~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp CCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred ccCCCEEEEcchhhcCH-HHHHHHH
Confidence 11456999999887776 7888774
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.11 E-value=7.9e-12 Score=110.37 Aligned_cols=143 Identities=24% Similarity=0.169 Sum_probs=77.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-----------CCceEEEcCEeCCC--CCHHHHhcceEEecCCCcccc--ccHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDP-----------LSGCILVDDHDVQN--IRLDSLRRHVGLVSQDITLFS--GTVAE 281 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~~lf~--~ti~e 281 (382)
+++|+|++|||||||++.++|...| +.|+|.++|.++.- ++....++..++++|...-.. -++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976531 111111222333332211000 01222
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 282 Ni~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
+... .+.+++...++. .-..-+...- -.++.. ..|..-..+....||+++.+|+++++| ||++|.
T Consensus 111 ~~~~------~s~~~~~~~~~~-----~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKH------LTYENVERWLKE-----LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCH------HHHHTHHHHHHH-----HHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCH------HHHHHHHHHHHH-----HHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 1100 001111111110 0000011100 011111 122222223478899999999999999 999999
Q ss_pred HHHHHHHHHHHHH
Q 016798 361 RSELLVRQAVDRL 373 (382)
Q Consensus 361 ~~~~~i~~~l~~~ 373 (382)
.+...+.+.|.+.
T Consensus 177 ~~v~~l~~~l~~~ 189 (191)
T 1oix_A 177 TNVEAAFQTILTE 189 (191)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999888887653
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.10 E-value=1.4e-13 Score=129.21 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=95.6
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++.+......++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 34566655643 35899999999999 99999999999999999999985 78999998876544444455668888
Q ss_pred cCCCc-ccc-ccHHHHH-cCCCCCCC---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 269 SQDIT-LFS-GTVAENI-GYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 269 ~Q~~~-lf~-~ti~eNi-~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+|++. .++ -++.||+ .++..... ...++..+.+ ..++ ..|||||+||..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEEe
Confidence 88864 343 3677877 33221000 0011111111 1122 24789999999999999
Q ss_pred cCCCCEEEEeCcC
Q 016798 343 YQNSSVLILDEAT 355 (382)
Q Consensus 343 l~~~~ililDEpt 355 (382)
..+|++ ||++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 67664
No 158
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.09 E-value=2.4e-12 Score=117.40 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=52.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC--------H
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--------L 258 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~--------~ 258 (382)
.|+++|++..|.. ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+ .
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5788887654421 566666 899999999999999999999999999999999999884332 2
Q ss_pred HHHhcceEEecCC
Q 016798 259 DSLRRHVGLVSQD 271 (382)
Q Consensus 259 ~~~r~~i~~v~Q~ 271 (382)
...+..++|++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2346789999985
No 159
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.05 E-value=2.4e-13 Score=125.63 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=95.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
.+++++.+.|.. +.+++++++++++| ++|+||||||||||++++++... .|.+.++|.++.+......++.++.
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 345666666643 35899999999999 99999999999999999999985 7899999877654444444566778
Q ss_pred ecCCCc-cc-cccHHHHH-cCCCCCCC---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 268 VSQDIT-LF-SGTVAENI-GYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 268 v~Q~~~-lf-~~ti~eNi-~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
++|+.. .+ .-++.||+ .++..... ...++..+.+ ..++ ..|||||+||..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 888764 33 33677777 33321000 0111111111 1122 2477999999999999
Q ss_pred ccCCCCEEEEeCcCC
Q 016798 342 LYQNSSVLILDEATS 356 (382)
Q Consensus 342 ll~~~~ililDEpts 356 (382)
+..+|++ +|++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999987 687654
No 160
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.02 E-value=2.6e-10 Score=111.50 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=49.4
Q ss_pred CCCChHHHHHH------HHHHHccCC-CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 326 SSLSGGQRQRL------AIARALYQN-SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 326 ~~lSgGq~Qri------alaRall~~-~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
..|||||+||+ ++||++..+ |+++||||||++||+.+...+.+.|+++.+++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi 340 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEE
Confidence 58999999988 668999999 99999999999999999999999999876556665
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.00 E-value=2.4e-11 Score=126.24 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=103.8
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC-ceEEEcCEeCCCCCHHHHhcceEEecCCC--------
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLDSLRRHVGLVSQDI-------- 272 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-------- 272 (382)
..+++++++.+++|+.+.|+||+|+|||||+++|++++++.. |.+.+++.+.... ...++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999887 8888888766543 44688887754
Q ss_pred --------------ccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 273 --------------TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 273 --------------~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+.| ..++.+|+...+.... ....+.. ......+++.... ++. .....+|+|++|++.
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~-~~~~v~~--~~~~~~~L~G~~~--~~~---~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRT-KAPFIDA--TGAHAGALLGDVR--HDP---FQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCS-SCCEEEC--TTCCHHHHHCEEC--CCC---C----CCCCGGGGEE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCC-CCCEEEc--CCCCHHhcCceEE--ech---hhcCCcccccccccc
Confidence 222 2244445543221000 0000000 0111222332211 011 122459999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~ 372 (382)
.++....++.+|+|||... |++.....+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899888888888865
No 162
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.00 E-value=8.3e-11 Score=104.83 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=67.2
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-------------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 275 (382)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 44456899999999999999999999999986 67787 689998888888888765 7999999
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHH
Q 016798 276 SGTVAENIGYRDLMTKIDMERVEHTART 303 (382)
Q Consensus 276 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~ 303 (382)
.+++.+|. ||.+ .+.+.++++.
T Consensus 88 ~~~~~~n~-YGt~-----~~~v~~~l~~ 109 (197)
T 3ney_A 88 FGSYQGNM-FGTK-----FETVHQIHKQ 109 (197)
T ss_dssp EEEETTEE-EEEE-----HHHHHHHHHT
T ss_pred hhhhhcee-cccc-----hhhHHHHHhc
Confidence 99999994 7643 4556666554
No 163
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.96 E-value=9e-11 Score=102.85 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEE----------cCEeCCCCCHHHHhcceEEecCCCccccccHHHH
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILV----------DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~----------~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
+|++++|+||||||||||+++|++++++ ..|.|.. +|.++...+.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 7999999999999999999999999874 4555543 5555555666666653 568888888888888
Q ss_pred HcCCCCCCCCCHHHHHHHHH
Q 016798 283 IGYRDLMTKIDMERVEHTAR 302 (382)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~ 302 (382)
.+|. +.+.+.++++
T Consensus 81 -~yg~-----~~~~i~~~l~ 94 (180)
T 1kgd_A 81 -MYGT-----KLETIRKIHE 94 (180)
T ss_dssp -EEEE-----EHHHHHHHHH
T ss_pred -cccc-----cHHHHHHHHH
Confidence 4543 2455555554
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.93 E-value=1.1e-11 Score=121.30 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=87.4
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
.+++++|+++++|+.++|+||+|||||||+++|+|.+ +|.+..- +. +.+.++..+++++|...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NL---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SS---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ec---cchhHHHHHHHhcchhHHH----HHH
Confidence 4799999999999999999999999999999999964 6777651 11 1122333478889887643 334
Q ss_pred HcCCCC-CCCC-CHHHHHHHHHHcChHHHHHh---------CCCCcc-----cccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 283 IGYRDL-MTKI-DMERVEHTARTANADEFVRT---------LPQGYN-----THIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 283 i~~~~~-~~~~-~~~~~~~~~~~~~l~~~i~~---------lp~Gld-----t~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
+..... .+.. ..+.+. ....+.+.+.. .|+-++ -.+..+...+++|++||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 432211 0000 000110 11223333321 111111 0233455678999999999998899999
Q ss_pred CEEE-EeCcCC
Q 016798 347 SVLI-LDEATS 356 (382)
Q Consensus 347 ~ili-lDEpts 356 (382)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9888 898876
No 165
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.92 E-value=2e-09 Score=102.00 Aligned_cols=102 Identities=13% Similarity=0.143 Sum_probs=67.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~ 292 (382)
++|++++++|+|||||||+++.|++.+.+.+| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999988778 24667777763 323333331
Q ss_pred CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHH
Q 016798 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369 (382)
Q Consensus 293 ~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~ 369 (382)
...+.. |++-... .+ +...+.+++++ ++|+++|+| |+++|......+.+.
T Consensus 155 ------~~~~~~-----------gl~~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el 204 (296)
T 2px0_A 155 ------TYAELL-----------QAPLEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDEL 204 (296)
T ss_dssp ------HHHTTT-----------TCCCCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHH
T ss_pred ------HHHHhc-----------CCCeEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHH
Confidence 111111 1111111 12 34457778765 999999999 999998766555443
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.82 E-value=1.1e-09 Score=96.97 Aligned_cols=138 Identities=23% Similarity=0.212 Sum_probs=73.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-----CC------CceEEEcCEeCC----CCC-HHHHhcceEEecCCCc--c--cc
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD-----PL------SGCILVDDHDVQ----NIR-LDSLRRHVGLVSQDIT--L--FS 276 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~-----~~------~G~i~~~g~~~~----~~~-~~~~r~~i~~v~Q~~~--l--f~ 276 (382)
+++|+|++|||||||++.++|... |+ .|.|.++|.++. +.+ .+.+++......++.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 689999999999999999999842 43 578999997652 222 2233332333333322 1 11
Q ss_pred ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcC
Q 016798 277 GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (382)
Q Consensus 277 ~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq~QrialaRall~~~~ililDEpt 355 (382)
.+-.. +.+++...++. .-...+.+... .++.. ..|..-.......||+++.+|++.++| |
T Consensus 87 ~~~~~-----------s~~~~~~~~~~-----~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~ 147 (199)
T 2f9l_A 87 IAKHL-----------TYENVERWLKE-----LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--T 147 (199)
T ss_dssp TTCHH-----------HHHTHHHHHHH-----HHHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--C
T ss_pred CcCHH-----------HHHHHHHHHHH-----HHHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--E
Confidence 11100 01111111110 00000111000 11111 112111112245689999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 016798 356 SALDSRSELLVRQAVDRL 373 (382)
Q Consensus 356 s~LD~~~~~~i~~~l~~~ 373 (382)
|++|......+.+.|.+.
T Consensus 148 Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999888888777553
No 167
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.79 E-value=8.8e-10 Score=98.38 Aligned_cols=53 Identities=25% Similarity=0.219 Sum_probs=44.0
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR 286 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~ 286 (382)
+-=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 334578899999999999999999999999875 37899999998876 566543
No 168
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.76 E-value=2.8e-10 Score=115.21 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=84.8
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhh--CCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc---cc---
Q 016798 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS---GT--- 278 (382)
Q Consensus 207 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~---~t--- 278 (382)
-+++++.++..+.|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. -||++. ..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4788999999999999999999999999886 67777899998888877644333321 122221 00
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH----------HHHHHccCCCC-
Q 016798 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL----------AIARALYQNSS- 347 (382)
Q Consensus 279 i~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri----------alaRall~~~~- 347 (382)
..+.+.... ...++-.+.++..++.++- +|+..+ ...+|+||+|+. ++|+++...|.
T Consensus 232 a~~~L~~~~----~EmerR~~ll~~~Gv~~i~-----~yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 232 AANALRWCV----NEMERRYKLMSALGVRNLA-----GYNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHTTCSSHH-----HHHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred HHHHHHHHH----HHHHHHHHHHHHcCCccHH-----HHHHHH---HHHhhcCCcccccccccccchhccccccccCCcE
Confidence 111111000 0011112333333322111 111111 124677877652 46778888898
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
++++||+++-+|.. ...+.+.+.++
T Consensus 300 vlvIDE~~~ll~~~-~~~~~~~l~~L 324 (512)
T 2ius_A 300 VVLVDEFADLMMTV-GKKVEELIARL 324 (512)
T ss_dssp EEEEETHHHHHHHH-HHHHHHHHHHH
T ss_pred EEEEeCHHHHHhhh-hHHHHHHHHHH
Confidence 78899999988743 33455555444
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.75 E-value=1.4e-09 Score=96.74 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=52.1
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHc
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIG 284 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~ 284 (382)
-.++-++|++++|+|+|||||||++++|++.+ |.+.++|.++... ....+...++++|++..+.. ++.+|+.
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 34667899999999999999999999999988 8999999877531 11222357899999877644 6777764
No 170
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.75 E-value=7.7e-10 Score=102.33 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=35.8
Q ss_pred cEEEEeE-EEEeCCCCCCccceeeEEeeC---CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 187 DVKFCNI-SFKYADNMPLVLDQLNLHIRA---GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 187 ~i~~~~v-~f~y~~~~~~~l~~isl~i~~---G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|+ +|+|.+ ..++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999933 34699999999999 9999999999999999999999855
No 171
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=1.4e-10 Score=113.92 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=82.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhh------------CCCCCCceEEEcCEeCCCCC-HHHHhcc---eEEecCCCcc
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLR------------LYDPLSGCILVDDHDVQNIR-LDSLRRH---VGLVSQDITL 274 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g------------~~~~~~G~i~~~g~~~~~~~-~~~~r~~---i~~v~Q~~~l 274 (382)
++++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+. ...-++. ...+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 56799999999874432110 0000112 2467777777
Q ss_pred ccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcCh-HHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC--CEEE
Q 016798 275 FSG-TVAENIGYRDLMTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS--SVLI 350 (382)
Q Consensus 275 f~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l-~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~--~ili 350 (382)
..+ |..|++ .. .....++.+.. -..++... + .....+||+. || ++.+
T Consensus 96 ~~~~s~~e~L---------~~-~fl~~ir~~d~il~Vvd~~~---d----~~i~~v~~~~------------dP~~di~i 146 (392)
T 1ni3_A 96 TKGASTGVGL---------GN-AFLSHVRAVDAIYQVVRAFD---D----AEIIHVEGDV------------DPIRDLSI 146 (392)
T ss_dssp CCCCCSSSSS---------CH-HHHHHHTTCSEEEEEEECCC---T----TCSSCCSSSS------------CHHHHHHH
T ss_pred ccCCcHHHHH---------HH-HHHHHHHHHHHHHHHHhccc---c----ceeeeecccc------------Ccchhhhh
Confidence 654 433332 11 12222222211 00111100 1 1222345542 89 9999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHH
Q 016798 351 LDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~ 373 (382)
+|||++.+|.+...+..+.++..
T Consensus 147 ldeel~~~D~~~~~k~~~~l~~~ 169 (392)
T 1ni3_A 147 IVDELLIKDAEFVEKHLEGLRKI 169 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888776
No 172
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.71 E-value=4.5e-09 Score=93.17 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=41.2
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 275 (382)
++|++|++++|+|||||||||++++|++++.|+.| +.+ +....... ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977655 222 12222211 11123477888876443
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.70 E-value=5e-09 Score=109.92 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=73.7
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCC
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR 286 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~ 286 (382)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.+....+.++.+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 77999 789999999998889999999999999988888888532
Q ss_pred CCCCCCCHHHHHHHHHHcCh
Q 016798 287 DLMTKIDMERVEHTARTANA 306 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l 306 (382)
....++ ..++..+++.+..
T Consensus 82 pG~~~f-~~~~~~~l~~ad~ 100 (665)
T 2dy1_A 82 PGYGDF-VGEIRGALEAADA 100 (665)
T ss_dssp CCSGGG-HHHHHHHHHHCSE
T ss_pred CCccch-HHHHHHHHhhcCc
Confidence 211111 2445555555543
No 174
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.68 E-value=2.1e-09 Score=110.06 Aligned_cols=91 Identities=27% Similarity=0.361 Sum_probs=60.7
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-eEE-EcCEeCCC-------CCHH---HHhcceEEecCCCccccc
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CIL-VDDHDVQN-------IRLD---SLRRHVGLVSQDITLFSG 277 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~i~-~~g~~~~~-------~~~~---~~r~~i~~v~Q~~~lf~~ 277 (382)
..+++|++++|+|+||||||||+++|+|.+.|++| ++. +||.++.+ ++.. .+++.+++++|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36789999999999999999999999999999887 784 89876532 2221 2345678888863
Q ss_pred cHHHHHcCCCCCC--CCCHHHHHHHHHHcC
Q 016798 278 TVAENIGYRDLMT--KIDMERVEHTARTAN 305 (382)
Q Consensus 278 ti~eNi~~~~~~~--~~~~~~~~~~~~~~~ 305 (382)
+..+|+.+..... ....++..+.++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 4455654322110 112344555565544
No 175
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.67 E-value=5.7e-09 Score=99.93 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=62.0
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH----HHH-----hcceEEe-cCCCcc
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSL-----RRHVGLV-SQDITL 274 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~~l 274 (382)
++++||++++|++++++|++|+||||++..|++.+.+.+|+|.+.+.|...... ..+ +..+.++ +|.+..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 467888899999999999999999999999999999999999998888754321 234 5678999 776554
Q ss_pred ccc-cHHHHHc
Q 016798 275 FSG-TVAENIG 284 (382)
Q Consensus 275 f~~-ti~eNi~ 284 (382)
.+. ++.+++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 433 4556553
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.67 E-value=6.5e-10 Score=98.89 Aligned_cols=61 Identities=30% Similarity=0.378 Sum_probs=46.9
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE--EEcCEeCC
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI--LVDDHDVQ 254 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i--~~~g~~~~ 254 (382)
+|++.++.. ....+..++..++|++++|+|||||||||++++|++.+. ..|.+ .+||.++.
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 355554432 346788899999999999999999999999999999997 77988 89987764
No 177
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.65 E-value=3.9e-08 Score=95.22 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=29.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
-+++|+++.|.||+|||||||+..++.......|.+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vl 93 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAA 93 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 5889999999999999999998888766544444444
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.62 E-value=9.7e-09 Score=100.07 Aligned_cols=144 Identities=19% Similarity=0.204 Sum_probs=83.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-----------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCcc----ccccHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD-----------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL----FSGTVAE 281 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----f~~ti~e 281 (382)
+++|+|++|||||||++.|+|... |+.|.|.++|.++. +....|++.+.|+- |..|. +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999875 57799999987652 23456777665542 33332 2
Q ss_pred HHc------CCCCCCCCCHHHHHHHHHHcChHHHHHhCC-CCc-ccccCCCCCCCChHHHHHHHHH----HHc-cCCCCE
Q 016798 282 NIG------YRDLMTKIDMERVEHTARTANADEFVRTLP-QGY-NTHIGPRGSSLSGGQRQRLAIA----RAL-YQNSSV 348 (382)
Q Consensus 282 Ni~------~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp-~Gl-dt~vge~G~~lSgGq~Qriala----Ral-l~~~~i 348 (382)
.+. +.-...+ ...+..+..+. ..+.+..+. .+. --.|+..-..+|++++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~-~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTF-SENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGGGSSEEEEEEETTS-CHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHhCCEEEEEEECCC-CcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 222 1100011 11111111111 112222210 111 1122444556788888988877 666 445554
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 349 LILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 349 lilDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
+|||++|...-..+.+.|.+..
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999998888888887653
No 179
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.60 E-value=1.2e-09 Score=110.57 Aligned_cols=140 Identities=17% Similarity=0.183 Sum_probs=94.3
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++++...|.. +..++++++++++| +.|+||+|+|||||+++|++... .+.+.+++.++.+.......+++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 34455444432 35789999999999 99999999999999999999985 68999999887665444455667788
Q ss_pred cCCCc-cccc-cHHHHH-cCCCCCCC---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 269 SQDIT-LFSG-TVAENI-GYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 269 ~Q~~~-lf~~-ti~eNi-~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+|... .++. .+.|++ .++..... ...++..+.+. .++. .|||||+|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHHH---------------HhcccccCccEEEEEe
Confidence 88875 3333 567777 34321100 01222222221 2222 3667888888888888
Q ss_pred cCCCCEEEEeCcCC
Q 016798 343 YQNSSVLILDEATS 356 (382)
Q Consensus 343 l~~~~ililDEpts 356 (382)
..+|++ |||+.-
T Consensus 176 tn~p~~--LD~aLl 187 (499)
T 2dhr_A 176 TNRPDI--LDPALL 187 (499)
T ss_dssp CSCGGG--SCTTTS
T ss_pred cCChhh--cCcccc
Confidence 888887 788765
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.59 E-value=9.1e-09 Score=92.14 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=44.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEE----------cCEeCCCCCHHHHhcceEEecCCCccccccHHH
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILV----------DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~----------~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (382)
++|++++|+|||||||||+++.|++.++| ..+.+.. +|.+....+...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999987 4444432 34444444555554432 3445555444444
Q ss_pred H
Q 016798 282 N 282 (382)
Q Consensus 282 N 282 (382)
|
T Consensus 83 ~ 83 (208)
T 3tau_A 83 N 83 (208)
T ss_dssp E
T ss_pred c
Confidence 4
No 181
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.57 E-value=1.3e-08 Score=88.69 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=48.1
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE--eCCCCC----HHHHhcceEEecCCCc
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH--DVQNIR----LDSLRRHVGLVSQDIT 273 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~--~~~~~~----~~~~r~~i~~v~Q~~~ 273 (382)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-... ....+..|.+++|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 7889999999 99999999999999999999998887765433221 110000 0013457899999863
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=2.7e-08 Score=88.29 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=25.1
Q ss_pred EeCC-CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 196 KYAD-NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 196 ~y~~-~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|+. ...++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3443 3357899999999999999999999999999999999876
No 183
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.52 E-value=3.1e-08 Score=90.05 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=34.7
Q ss_pred Ccccee-eEEeeCCCEEEEECCCCCcHHHHHH-HHhhCCCCCCceEEEcC
Q 016798 203 LVLDQL-NLHIRAGETVALIGPSGGGKSTLAK-LLLRLYDPLSGCILVDD 250 (382)
Q Consensus 203 ~~l~~i-sl~i~~G~~~aivG~sGsGKSTl~~-ll~g~~~~~~G~i~~~g 250 (382)
+.|+++ .--+++|+.++|+||+|||||||+. ++.+..++..+.+.+++
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 356666 5679999999999999999999965 44555544444445543
No 184
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.46 E-value=4.2e-09 Score=95.86 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=49.9
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC------CHHH----HhcceEEecCCCcccc
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------RLDS----LRRHVGLVSQDITLFS 276 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~lf~ 276 (382)
-+.+.++|++++|.|+|||||||++++|+|+ +|+|.+.+.+.... .... .++.+++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3445689999999999999999999999998 78999998875421 1111 1356889999877654
No 185
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.39 E-value=1.9e-07 Score=93.60 Aligned_cols=154 Identities=11% Similarity=0.072 Sum_probs=91.6
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-eEEEcCEeCCCCCHHHHhcce-EEecCCCccccccHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHV-GLVSQDITLFSGTVA 280 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~lf~~ti~ 280 (382)
+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+-+. +.+...+++++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~------~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN------A- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC------H-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC------H-
Confidence 468888888999999999999999999999999988766545 5666443 34445554332 1111100 0
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc--CCCCEEEEeCcCCCC
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATSAL 358 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall--~~~~ililDEpts~L 358 (382)
+.+..|. .++++..++.+.. +.+...| -.+. ....+|.+|.+ +.+|.+. .+|+++|+|+++.-.
T Consensus 261 ~~l~~g~----l~~~~~~~~~~a~---~~l~~~~----l~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 261 QNLRTGK----LTPEDWGKLTMAM---GSLSNAG----IYID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp HHHHTSC----CCHHHHHHHHHHH---HHHHSSC----EEEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred HHHhcCC----CCHHHHHHHHHHH---HHHhcCC----EEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 1222221 3444443333221 2232222 1111 23478999876 5667766 579999999999877
Q ss_pred CH--------HHHHHHHHHHHHHhC--CCcee
Q 016798 359 DS--------RSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 359 D~--------~~~~~i~~~l~~~~~--~~TvI 380 (382)
+. .....+.+.|+++.+ +.++|
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi 358 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVI 358 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 43 122455566665542 45555
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.39 E-value=3.4e-07 Score=88.83 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=35.8
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh--CCCCCCceEEEcCE
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDH 251 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g--~~~~~~G~i~~~g~ 251 (382)
.+|++++++++ .+++||++|||||||++.|.| ++++.+|.+.....
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 47899999998 999999999999999999999 77777787754443
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.34 E-value=8.7e-08 Score=82.78 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=41.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-ceEEecCCCcc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HVGLVSQDITL 274 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~~~l 274 (382)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.. ...+++ .+++.+|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~ 62 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDDR 62 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcccc
Confidence 469999999999999999999999976 789998876643 122222 35666666443
No 188
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.30 E-value=1.6e-07 Score=83.40 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=40.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~ 257 (382)
..++|++++|+|+|||||||+++.|.+++++.+|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 35789999999999999999999999999988999988766654444
No 189
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.30 E-value=9.6e-08 Score=92.79 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=49.4
Q ss_pred CCcEEEEeEEEEeCCCCCCccc--------------eeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 185 NGDVKFCNISFKYADNMPLVLD--------------QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~--------------~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.+.|+||+|.||.. +..|+ |+++.|.+|++++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4679999999999964 56888 899999999999999999999999999999986
No 190
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.29 E-value=4.6e-07 Score=89.74 Aligned_cols=144 Identities=16% Similarity=0.116 Sum_probs=84.4
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-HhcceEEe
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHVGLV 268 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v 268 (382)
.++++..|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++..
T Consensus 79 ~~~L~~~~~~~--~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~---- 148 (425)
T 2ffh_A 79 YEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL---- 148 (425)
T ss_dssp HHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH----
T ss_pred HHHHHHHhCCC--c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh----
Confidence 34455556432 1 567777 89999999999999999999999999999999999877765422211 2110
Q ss_pred cCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhC-CCCcccccCCCCCCCC---hHHHHHHHHHHHccC
Q 016798 269 SQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL-PQGYNTHIGPRGSSLS---GGQRQRLAIARALYQ 344 (382)
Q Consensus 269 ~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l-p~Gldt~vge~G~~lS---gGq~QrialaRall~ 344 (382)
.-+.|+.+.......+..++. .+.+..+ .+++|..+-+-+..++ .-..+..++++++..
T Consensus 149 ---------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 149 ---------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp ---------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred ---------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 001122111000112334431 1222222 2467766554333332 245666778888866
Q ss_pred CCCEEEEeCcCCCCCHH
Q 016798 345 NSSVLILDEATSALDSR 361 (382)
Q Consensus 345 ~~~ililDEpts~LD~~ 361 (382)
++-++++| ++++.|..
T Consensus 212 d~vlLVvD-a~tgq~av 227 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEAL 227 (425)
T ss_dssp SEEEEEEE-GGGTTHHH
T ss_pred ceEEEEEe-ccchHHHH
Confidence 66677788 55665544
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.26 E-value=1.1e-06 Score=88.44 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=30.1
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
..++++++++++| +.|+||+|+|||||++.+++..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 3577788888887 8899999999999999999843
No 192
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.21 E-value=1.3e-06 Score=93.17 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCC-CCCHHHHHHHHHHHHHHhCC
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts-~LD~~~~~~i~~~l~~~~~~ 376 (382)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+.+..++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~ 240 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD 240 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999999997 89988776777777665543
No 193
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.16 E-value=1.8e-06 Score=85.74 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=35.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
++.+++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888998765553
No 194
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.15 E-value=2.7e-06 Score=82.34 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=42.3
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEe-CcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILD-EATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililD-Epts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+..+++.+|
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pii 284 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL 284 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEE
Confidence 468999999887 66666777788999 9999999998888888887765455443
No 195
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.15 E-value=3.8e-07 Score=87.14 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=70.5
Q ss_pred CccceeeEEeeCCC------EEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHHHhcceEEecCCCcc
Q 016798 203 LVLDQLNLHIRAGE------TVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (382)
Q Consensus 203 ~~l~~isl~i~~G~------~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 274 (382)
..|++++..+.+++ ++||+|||||||||++++|.+++.+ ++|. ++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccc
Confidence 35666776666665 8999999999999999999999873 4444 4455555554
Q ss_pred ccccHHHHHc----CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHHHHHHHHHccCCCCEE
Q 016798 275 FSGTVAENIG----YRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALYQNSSVL 349 (382)
Q Consensus 275 f~~ti~eNi~----~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~QrialaRall~~~~il 349 (382)
++....+... +|.|. ..+.+.+.+.+ ..+.+|-+ ..+ -.+|.+..+|+.-+...+..|+|+
T Consensus 135 ~~~~~l~~~~~~~~~g~P~-~~D~~~l~~~L---------~~L~~g~~~v~~----P~yd~~~~~r~~~~~~~v~~~dIV 200 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPE-SYDMPSLLRVL---------NAIKSGQRNVRI----PVYSHHYYDIVRGQYEIVDQPDIV 200 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGG-GBCHHHHHHHH---------HHHHTTCSSEEE----EEEETTTTEEEEEEEEEECSCSEE
T ss_pred cchhhhhhHHHHhhccCcc-cccHHHHHHHH---------Hhhhcccccccc----chhhhhccccccCceeeccCCCEE
Confidence 4433222211 22221 23444433333 22223321 100 012222233433334566789999
Q ss_pred EEeCcCCCCCH
Q 016798 350 ILDEATSALDS 360 (382)
Q Consensus 350 ilDEpts~LD~ 360 (382)
|+|.+..-.|.
T Consensus 201 IvEGi~lL~~~ 211 (321)
T 3tqc_A 201 ILEGLNILQTG 211 (321)
T ss_dssp EEECTTTTCCC
T ss_pred EEEcccccccc
Confidence 99987766554
No 196
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.06 E-value=9.2e-06 Score=78.07 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=69.4
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHH
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 283 (382)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.| .|++=+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fSlE------------ 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFSLE------------ 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEESS------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEeCC------------
Confidence 4666666799999999999999999999988876543322233 332211
Q ss_pred cCCCCCCCCCHHHHHH----HHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCC
Q 016798 284 GYRDLMTKIDMERVEH----TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~----~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD 359 (382)
.+.+++.. ....+.+..+.. ..||.+++||++.|...+.+++++|.|+|..++|
T Consensus 84 --------ms~~ql~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 84 --------MSAEQLALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp --------SCHHHHHHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred --------CCHHHHHHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 22333322 112223333221 2699999999999999999999999999875543
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.97 E-value=1.3e-06 Score=89.35 Aligned_cols=79 Identities=22% Similarity=0.247 Sum_probs=48.4
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecC
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 270 (382)
+++..+|.. ..+++++++++ +|+.+.|+||+|+|||||+++|++...+..|.|.++|......-....++.+++.+|
T Consensus 87 ~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~ 163 (543)
T 3m6a_A 87 EKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPG 163 (543)
T ss_dssp HHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------
T ss_pred HHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCch
Confidence 444444432 24678888888 899999999999999999999999999999999888754322111223455777766
Q ss_pred CC
Q 016798 271 DI 272 (382)
Q Consensus 271 ~~ 272 (382)
..
T Consensus 164 ~~ 165 (543)
T 3m6a_A 164 RI 165 (543)
T ss_dssp CH
T ss_pred HH
Confidence 54
No 198
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.92 E-value=2e-06 Score=74.56 Aligned_cols=41 Identities=34% Similarity=0.489 Sum_probs=33.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc--eEEEcCEeCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDVQ 254 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G--~i~~~g~~~~ 254 (382)
++|++++|+|++||||||+++.|.+.++| .| .+.+|+..+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998866 56 6777765553
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.92 E-value=1.4e-06 Score=84.03 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=46.4
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~ 254 (382)
.+++++++.+++|.+++|+|++|+|||||++.|++.+.+.+|+|.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888887666653
No 200
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.90 E-value=6.3e-06 Score=82.05 Aligned_cols=68 Identities=25% Similarity=0.395 Sum_probs=42.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCC------------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHH
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYD------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAEN 282 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eN 282 (382)
-+++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....++...+.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3799999999999999999999853 6789999999877555555555555666666655543 34444
Q ss_pred H
Q 016798 283 I 283 (382)
Q Consensus 283 i 283 (382)
+
T Consensus 261 i 261 (439)
T 1mky_A 261 I 261 (439)
T ss_dssp H
T ss_pred H
Confidence 4
No 201
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.89 E-value=5.5e-06 Score=70.98 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
.|++++|+|++||||||++++|++.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 5789999999999999999999998754 55654
No 202
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.86 E-value=4.6e-06 Score=75.72 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=33.0
Q ss_pred ccceeeEEee---CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc
Q 016798 204 VLDQLNLHIR---AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (382)
Q Consensus 204 ~l~~isl~i~---~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~ 249 (382)
-|+++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3677777776 8999999999999999999999999988 7777654
No 203
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.86 E-value=3.3e-06 Score=76.93 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---hCCCCCCceE--------EEcCEeCCCCC-HHHHhcceEEec------CCCccc
Q 016798 214 AGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCI--------LVDDHDVQNIR-LDSLRRHVGLVS------QDITLF 275 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~---g~~~~~~G~i--------~~~g~~~~~~~-~~~~r~~i~~v~------Q~~~lf 275 (382)
..-+++|+||+||||||+.+.|+ |+...+.|.+ .-+|.++.+.. ..++.+.+.+.+ |+.+++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 5444556665 23566655432 334455555555 334444
Q ss_pred cccHHHHH
Q 016798 276 SGTVAENI 283 (382)
Q Consensus 276 ~~ti~eNi 283 (382)
...|.++|
T Consensus 88 g~~v~~~i 95 (233)
T 3r20_A 88 GEDVSSEI 95 (233)
T ss_dssp TEECTTGG
T ss_pred Ceehhhhh
Confidence 54666665
No 204
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.79 E-value=2.7e-06 Score=75.89 Aligned_cols=44 Identities=32% Similarity=0.280 Sum_probs=38.5
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc--eEEEcCEeC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDV 253 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G--~i~~~g~~~ 253 (382)
+.+++|.+++|+|++||||||+++.|.+.+.|..| .+.+++.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45778999999999999999999999999987888 888876544
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.78 E-value=6.3e-06 Score=79.66 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=36.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
+++.+++|+|++|||||||++.|.|.+.|.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4678999999999999999999999998999999887766543
No 206
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.78 E-value=2.7e-05 Score=70.55 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=70.5
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHcCCCCCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMT 290 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~ 290 (382)
+.+|+.+.++||+||||||++.+++.......|. ...+.++.+.|..... ++.+|+......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 4579999999999999999888764321111111 1346777777775433 677777421110
Q ss_pred CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCC---CCChHHHHHHHHHHHccCCCCEEEEeCcCC-CCCHHHHHHH
Q 016798 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGS---SLSGGQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLV 366 (382)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~---~lSgGq~QrialaRall~~~~ililDEpts-~LD~~~~~~i 366 (382)
... ..++.. ...+......+. --..|+-.+. .+..+++-+++|+||+-. ++|.......
T Consensus 136 ~~~--------~~~g~~-------~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 136 EPG--------KSCGYS-------VRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp CTT--------SSEEEE-------ETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred ccC--------ceEEEe-------echhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHH
Confidence 000 000000 000111110111 1234655554 344689999999999976 5777666445
Q ss_pred HHHHHHHhCC
Q 016798 367 RQAVDRLLGH 376 (382)
Q Consensus 367 ~~~l~~~~~~ 376 (382)
.+.+....++
T Consensus 199 l~~i~~~~~~ 208 (235)
T 3llm_A 199 LRDVVQAYPE 208 (235)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhhCCC
Confidence 5555444443
No 207
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.78 E-value=1e-05 Score=77.16 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=26.1
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+++|+.+.|.||+|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999999888653
No 208
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.77 E-value=5.3e-06 Score=73.00 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=39.2
Q ss_pred EEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh----CCC----CCCceEEEcCEeC
Q 016798 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYD----PLSGCILVDDHDV 253 (382)
Q Consensus 194 ~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g----~~~----~~~G~i~~~g~~~ 253 (382)
+|+|++- ..+++++|++.+++ +++++|++|+|||||++.+.+ .+. ++.+.+.++|..+
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 4567754 35899999998887 589999999999999999986 233 3456777777544
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.75 E-value=8e-05 Score=70.75 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=64.7
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
+.|+++.--+++|+.+.|.|++|+|||||+.-++.-..- .| ..+.|++=+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE----------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE----------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----------
Confidence 357777766999999999999999999998877743211 01 123333322
Q ss_pred HcCCCCCCCCCHHHHHHHHH----HcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCC
Q 016798 283 IGYRDLMTKIDMERVEHTAR----TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357 (382)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~----~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~ 357 (382)
.+.+++..-+. ...+.++. .|- ..||.+++||++-|...+.++++++.|+|...
T Consensus 106 ---------~s~~~l~~R~~~~~~~i~~~~l~----~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 ---------MGKKENIKRLIVTAGSINAQKIK----AAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp ---------SCHHHHHHHHHHHHTTCCHHHHH----SCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred ---------CCHHHHHHHHHHHHcCCCHHHHh----cCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 12333322211 12222221 010 12888899999998888888889988888644
No 210
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.75 E-value=5.1e-06 Score=73.66 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=26.3
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..+|..++|+|||||||||+++.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998774
No 211
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.72 E-value=0.0001 Score=71.10 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.9
Q ss_pred CCC--EEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 214 AGE--TVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 214 ~G~--~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
.+. .+.|.||+|+||||+++.+++...+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 456 89999999999999999999988765
No 212
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.72 E-value=1.3e-05 Score=77.57 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=46.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE-EEcCEeCCCCCHHHHhcceEEecCCCcc
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-LVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 274 (382)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+.. +. .+.+++++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhhh
Confidence 488999999999999999999999999988888876 56654322 22 244567877765443
No 213
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.70 E-value=1.1e-05 Score=76.13 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++.+++|+|++|+|||||++.|+|.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44489999999999999999999863
No 214
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.65 E-value=0.00022 Score=66.54 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++..+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 367889999999999999999999855
No 215
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.62 E-value=3.6e-05 Score=67.06 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=29.2
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh----CCCC----CCceEEEcCEeC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYDP----LSGCILVDDHDV 253 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g----~~~~----~~G~i~~~g~~~ 253 (382)
+++++|++.++. +++++|++|+|||||++.+.+ .+.| +.+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 788999988777 789999999999999999997 3333 345666776543
No 216
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.60 E-value=3.8e-05 Score=64.82 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=24.5
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3455566554 89999999999999999987
No 217
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.59 E-value=4e-05 Score=65.71 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++|.+++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.58 E-value=1e-05 Score=76.34 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=41.7
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 677766 99999999999999999999999999889999988777643
No 219
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=3.7e-06 Score=80.58 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=50.2
Q ss_pred CccceeeEEeeCCCE--EEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC-CCHHHHhcceEEec
Q 016798 203 LVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-IRLDSLRRHVGLVS 269 (382)
Q Consensus 203 ~~l~~isl~i~~G~~--~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~i~~v~ 269 (382)
.+++.++..++.|+. +.+.||+|+||||+++++++.+.+..+.+.+.+.+..+ ...+.+|+.+..++
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~ 101 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA 101 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence 488999999999998 99999999999999999999987777665555444433 23445555444333
No 220
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.49 E-value=4.9e-05 Score=66.10 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=26.7
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 207 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999876
No 221
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.47 E-value=3.3e-05 Score=67.15 Aligned_cols=40 Identities=33% Similarity=0.402 Sum_probs=33.6
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE-EEcC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-LVDD 250 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i-~~~g 250 (382)
..++|..+.|+|++||||||+++.|++.+.+..|.+ .+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345799999999999999999999999988777776 4554
No 222
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.41 E-value=7.8e-05 Score=65.74 Aligned_cols=29 Identities=48% Similarity=0.700 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
+++|+|++||||||+.+.|+++ |...+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6899999999999999999983 5555554
No 223
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.41 E-value=0.0002 Score=71.27 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..+.|.||+|+|||||++.+++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 224
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.39 E-value=0.00035 Score=63.11 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCce
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~ 245 (382)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 58999999999999999999977665553
No 225
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.37 E-value=5.5e-05 Score=66.60 Aligned_cols=35 Identities=20% Similarity=0.477 Sum_probs=28.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
..+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999999876 4566665443
No 226
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.35 E-value=9.9e-06 Score=71.04 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 227
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.35 E-value=0.00019 Score=67.94 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
.+..+.|.||+|+|||||++.+++.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4568999999999999999999987744
No 228
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.34 E-value=1.5e-05 Score=77.35 Aligned_cols=58 Identities=26% Similarity=0.230 Sum_probs=36.3
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
.+.+.+++++..|.. ..++++++|+| +|+|++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 456888898887764 35789999987 99999999999999999987666555554443
No 229
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.31 E-value=5.6e-05 Score=69.35 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=33.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
..+++..+.|+|++||||||+.+.|...+. .|.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456788999999999999999999998875 25677776544
No 230
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.28 E-value=2.4e-05 Score=83.77 Aligned_cols=61 Identities=13% Similarity=0.295 Sum_probs=46.8
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 272 (382)
|.+++|+.+.|+||+|||||||+++|++.+.+. .+.+++.++.........+.+..++|++
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a 293 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEA 293 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHH
Confidence 468999999999999999999999999998653 4778877765544444455566666655
No 231
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.28 E-value=0.00012 Score=71.57 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=33.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhC-----------CCCCCceEEEcCE
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRL-----------YDPLSGCILVDDH 251 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~-----------~~~~~G~i~~~g~ 251 (382)
.+..|.+++|||++|+|||||++.|.|. ..|..|.+.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4568899999999999999999999998 6778888887653
No 232
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.25 E-value=0.00026 Score=59.87 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 233
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.24 E-value=0.00012 Score=70.18 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=26.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
+++..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999987654
No 234
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.23 E-value=0.00013 Score=63.35 Aligned_cols=38 Identities=34% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEe
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHD 252 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~ 252 (382)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3689999999999999999999886543 3677776544
No 235
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.22 E-value=0.00019 Score=63.12 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 236
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00018 Score=61.87 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 237
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.19 E-value=0.00022 Score=63.22 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=24.1
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
.+.++++.+ ...+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344555555 499999999999999999885
No 238
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.18 E-value=0.00019 Score=65.59 Aligned_cols=48 Identities=27% Similarity=0.401 Sum_probs=33.2
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
.++++++..++| +.|+||+|+||||+++.+++.+... -+.+++.++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~ 83 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVE 83 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHH
Confidence 344455555555 9999999999999999999987532 47778776644
No 239
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.17 E-value=0.00018 Score=70.16 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=40.1
Q ss_pred eEEEEeCCCCCCccceeeEEe---eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc
Q 016798 192 NISFKYADNMPLVLDQLNLHI---RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i---~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~ 249 (382)
.+.+.+.....+++-|. +.. ..+..++|+|+|||||||+++.+++.+.+..+.|.+-
T Consensus 10 G~~~G~~~~g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 10 GIVLGKDRDGGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CEEEEECTTSCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccEEEEeCCCCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 34444443333454444 222 2678899999999999999999998887788888763
No 240
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.14 E-value=0.00021 Score=61.60 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+++|+|++|+|||||++.+++...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999996433
No 241
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.12 E-value=0.0021 Score=63.87 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=31.5
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5676665699999999999999999999988876554
No 242
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.06 E-value=8e-05 Score=71.73 Aligned_cols=37 Identities=38% Similarity=0.509 Sum_probs=33.6
Q ss_pred CccceeeEEeeCCCE--EEEECCCCCcHHHHHHHHhhCC
Q 016798 203 LVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 203 ~~l~~isl~i~~G~~--~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 368889999999999 9999999999999999999865
No 243
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.06 E-value=0.00034 Score=59.87 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998664
No 244
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.03 E-value=0.00027 Score=60.98 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
No 245
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.00012 Score=69.73 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=29.7
Q ss_pred ccceeeEEeeCC--CEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 204 VLDQLNLHIRAG--ETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 204 ~l~~isl~i~~G--~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++.+.-.+..| ..+.|.||+|+||||+++.+++.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 556666556666 4599999999999999999998764
No 246
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.99 E-value=0.00055 Score=63.18 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
|++|||||..+|+++++|||| |.++...+ ++....++|++
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl 127 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVF 127 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEE
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEE
Confidence 899999999999999999999 98876544 44444577765
No 247
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.99 E-value=0.00037 Score=60.83 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=26.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
..+++|+|++||||||+.+.|... |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999986 6666654
No 248
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.92 E-value=0.00013 Score=64.43 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988654
No 249
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.92 E-value=0.00047 Score=58.38 Aligned_cols=23 Identities=35% Similarity=0.280 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|+|++||||||+++.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 250
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.90 E-value=0.00095 Score=57.57 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=27.6
Q ss_pred EEEEECCCCCcHHHHHHHHh-hC----CCCCCc----eEEEcCEe
Q 016798 217 TVALIGPSGGGKSTLAKLLL-RL----YDPLSG----CILVDDHD 252 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~-g~----~~~~~G----~i~~~g~~ 252 (382)
+++|+|++|+|||||++.++ +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 58999999999999997555 44 567766 66677654
No 251
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.88 E-value=0.00055 Score=61.82 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++|.+++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999863
No 252
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.86 E-value=0.00061 Score=58.70 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|.++.|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 253
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.84 E-value=0.0018 Score=59.78 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=25.0
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++++..+.|.||+|+||||+++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677889999999999999999998865
No 254
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.83 E-value=0.0017 Score=62.16 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=30.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~ 251 (382)
.+|..+.|.||+|+||||+++.++.........+.+++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 456789999999999999999999887644344555443
No 255
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.83 E-value=0.00067 Score=63.48 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=28.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
+|..+.|+|||||||||+.+.|+.-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987653 35677765
No 256
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.82 E-value=0.00067 Score=58.44 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999998655
No 257
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.79 E-value=0.00082 Score=58.68 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|..++|.|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999877
No 258
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.78 E-value=0.00088 Score=59.46 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
++.+++|+|++||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
No 259
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.74 E-value=0.00064 Score=58.79 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.73 E-value=0.00077 Score=56.85 Aligned_cols=19 Identities=47% Similarity=0.758 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 016798 217 TVALIGPSGGGKSTLAKLL 235 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll 235 (382)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.73 E-value=0.00053 Score=58.93 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++..+.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998544
No 262
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.73 E-value=0.00062 Score=64.45 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=29.3
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
.+++..+++ .|.-++|+|+||+||||++..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 567777777 899999999999999999999887
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.72 E-value=0.00072 Score=59.22 Aligned_cols=44 Identities=36% Similarity=0.656 Sum_probs=32.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC-------------CCCCceEEEcCEeCCCCCHHHHh
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY-------------DPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~-------------~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
.+.|+||||||||||++.|+.-+ +|..|++ ||++..-++.++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~ 59 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFK 59 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHH
Confidence 37899999999999999887543 2345654 77777666666554
No 264
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.69 E-value=0.00077 Score=57.87 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=27.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC----CCCCCc----eEEEcCE
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL----YDPLSG----CILVDDH 251 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~----~~~~~G----~i~~~g~ 251 (382)
-+++++|++|+|||||++.+.+- +.|+.| .+.+++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~ 60 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 60 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCE
Confidence 47999999999999999999976 345666 4555543
No 265
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.67 E-value=0.0015 Score=63.19 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=30.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhh-----------CCCCCCceEEEcC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLR-----------LYDPLSGCILVDD 250 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g-----------~~~~~~G~i~~~g 250 (382)
|-+++|||.+|+|||||++.|.+ -..|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56799999999999999999998 3357778887765
No 266
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.61 E-value=0.0011 Score=58.31 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++|.+++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 267
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.61 E-value=0.0012 Score=57.73 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+|..++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999986654
No 268
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.61 E-value=0.0065 Score=60.19 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~ 248 (382)
++.+++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 56789999999999999999999888655445544
No 269
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.61 E-value=0.0029 Score=63.01 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhh
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g 237 (382)
-+++|||++|+|||||++.|.|
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3799999999999999999987
No 270
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.60 E-value=0.001 Score=57.59 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998655
No 271
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.58 E-value=0.001 Score=56.81 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 272
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.57 E-value=0.0012 Score=58.12 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.2
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|.+++|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998643
No 273
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.57 E-value=0.001 Score=60.90 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998765
No 274
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.54 E-value=0.00097 Score=62.60 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=31.2
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
+.++++..+.|.||+|+||||+++.+++... .+.+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4568899999999999999999999998763 34455543
No 275
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.51 E-value=0.001 Score=57.37 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
..++|+|++|||||||+..|++.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 479999999999999999999877543
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.49 E-value=0.0014 Score=55.74 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhh
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g 237 (382)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 277
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.47 E-value=0.00053 Score=59.61 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=25.4
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+++.+++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998765
No 278
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.43 E-value=0.0016 Score=56.19 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997654
No 279
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.38 E-value=0.0013 Score=56.31 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=18.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++..+.|.|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998554
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.34 E-value=0.0018 Score=55.73 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++.|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 281
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.33 E-value=0.002 Score=62.32 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=26.2
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
+++..+++.+ ...+|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4666777766 589999999999999999886
No 282
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.31 E-value=0.0023 Score=56.83 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++|..+.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998765
No 283
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.28 E-value=0.0022 Score=56.05 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 284
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.0044 Score=51.65 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
.++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 285
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.24 E-value=0.0027 Score=55.45 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.+++|+|+.||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998755
No 286
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.24 E-value=0.0024 Score=55.30 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998766
No 287
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.23 E-value=0.014 Score=55.95 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++...+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999999765
No 288
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.22 E-value=0.012 Score=57.84 Aligned_cols=29 Identities=31% Similarity=0.266 Sum_probs=24.8
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.=++.+.+.|+|++||||||+.+.|+.-+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999998654
No 289
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.21 E-value=0.0022 Score=55.81 Aligned_cols=22 Identities=55% Similarity=0.616 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
No 290
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.19 E-value=0.0019 Score=60.22 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=28.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
...+.|+||+|+||||+++.+++...+.+|.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 357999999999999999999999877766543
No 291
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.19 E-value=0.0026 Score=56.20 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997654
No 292
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.18 E-value=0.0025 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 293
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.17 E-value=0.0026 Score=56.81 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++..+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456889999999999999999998654
No 294
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.17 E-value=0.0024 Score=54.84 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+++|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999998654
No 295
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.17 E-value=0.0024 Score=58.89 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998753
No 296
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.17 E-value=0.0028 Score=52.74 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 297
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.16 E-value=0.011 Score=58.71 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=28.3
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 35555445899999999999999999998776643
No 298
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.16 E-value=0.003 Score=53.42 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998644
No 299
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.15 E-value=0.003 Score=61.23 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|||++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
No 300
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0029 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.-.++++|++|+|||||++.+.+-..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34799999999999999999998653
No 301
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.13 E-value=0.0046 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 302
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.13 E-value=0.0014 Score=61.31 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 303
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.12 E-value=0.0031 Score=53.14 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998744
No 304
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.11 E-value=0.0025 Score=56.63 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998655
No 305
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.11 E-value=0.0042 Score=59.51 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=25.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988875
No 306
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.09 E-value=0.0033 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998853
No 307
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.09 E-value=0.0029 Score=55.93 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997655
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.08 E-value=0.0029 Score=55.23 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998655
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.07 E-value=0.0034 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 310
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.07 E-value=0.0032 Score=57.34 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
=.++|+|++|+|||||++.|+|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999864
No 311
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.07 E-value=0.0032 Score=55.23 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-.++|+|.+||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998763
No 312
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.07 E-value=0.0033 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 313
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.06 E-value=0.0034 Score=52.71 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 314
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.06 E-value=0.0027 Score=52.94 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999987543
No 315
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.06 E-value=0.0025 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998654
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.05 E-value=0.0032 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 317
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.04 E-value=0.0035 Score=51.94 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 318
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.02 E-value=0.0034 Score=57.19 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997643
No 319
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.01 E-value=0.0038 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 320
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.01 E-value=0.0037 Score=52.24 Aligned_cols=23 Identities=52% Similarity=0.564 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 321
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.99 E-value=0.0038 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 322
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.98 E-value=0.0039 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999888643
No 323
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.98 E-value=0.0046 Score=52.11 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++.-+++++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999999863
No 324
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.98 E-value=0.0039 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988643
No 325
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.96 E-value=0.0036 Score=52.17 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.96 E-value=0.0041 Score=52.37 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 327
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.95 E-value=0.0037 Score=56.71 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++-.++|.|++||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998655
No 328
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0076 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 329
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.93 E-value=0.0038 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 330
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.93 E-value=0.0044 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+++++|++|+|||||++.+.|-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5799999999999999999987653
No 331
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.93 E-value=0.0044 Score=54.05 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=23.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
..+.|.||+|+|||||++.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999876543
No 332
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.91 E-value=0.0035 Score=55.64 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
++..+.|.||+|+||||+++.++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999876643
No 333
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.90 E-value=0.0039 Score=52.54 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 334
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.90 E-value=0.0033 Score=57.99 Aligned_cols=23 Identities=43% Similarity=0.509 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+++||++|+|||||++.|++--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
No 335
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.89 E-value=0.0037 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
--.++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999875
No 336
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.88 E-value=0.0046 Score=51.44 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
.++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 337
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.87 E-value=0.0043 Score=57.50 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.87 E-value=0.0043 Score=56.82 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 339
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.86 E-value=0.0039 Score=53.33 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+++++|++|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998764
No 340
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.86 E-value=0.0049 Score=58.88 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998763
No 341
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.86 E-value=0.0047 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999976
No 342
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.85 E-value=0.0048 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 343
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.82 E-value=0.0049 Score=52.97 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 344
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.82 E-value=0.0049 Score=52.50 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 345
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.80 E-value=0.0043 Score=57.67 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhh
Q 016798 215 GETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g 237 (382)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 346
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.80 E-value=0.0063 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 347
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.80 E-value=0.0052 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 348
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.78 E-value=0.0053 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhh
Q 016798 215 GETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g 237 (382)
.-.++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999975
No 349
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.77 E-value=0.00049 Score=73.56 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=37.4
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~ 254 (382)
.++.+++|+.+.++||+|+|||||++++++.+. .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 467789999999999999999999999999885 345667766654
No 350
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.76 E-value=0.0057 Score=51.50 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.75 E-value=0.0072 Score=53.34 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=28.2
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+...-+++ .|..+.|+||||+|||||+..|+.-.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 456655554 78899999999999999999887643
No 352
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.0055 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
No 353
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.74 E-value=0.0046 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 354
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.73 E-value=0.0051 Score=51.69 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 355
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.71 E-value=0.0059 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 356
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.70 E-value=0.0054 Score=57.63 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999985
No 357
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.70 E-value=0.0077 Score=49.86 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=26.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCce
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~ 245 (382)
+.+.-+.|.||+|+|||++++.|........+.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 456779999999999999999999876543333
No 358
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.69 E-value=0.0059 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 359
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.68 E-value=0.006 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999863
No 360
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.68 E-value=0.0055 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|-.+.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 361
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.68 E-value=0.0062 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 362
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.62 E-value=0.0056 Score=54.07 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 363
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.60 E-value=0.0059 Score=55.55 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-.++|+|++|+|||||++.|+|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999754
No 364
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.60 E-value=0.0059 Score=58.39 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=22.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..++|+||||||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997764
No 365
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.57 E-value=0.007 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 366
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.57 E-value=0.011 Score=50.03 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 367
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.57 E-value=0.007 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 368
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.57 E-value=0.0064 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 369
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.56 E-value=0.0061 Score=55.82 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
No 370
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.55 E-value=0.0072 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999854
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.54 E-value=0.0071 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-.++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 372
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.54 E-value=0.0072 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 373
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.53 E-value=0.0068 Score=57.04 Aligned_cols=24 Identities=42% Similarity=0.434 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+++|+|++|+|||||++.|.|--
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999853
No 374
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.53 E-value=0.0078 Score=56.89 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..++|+||||||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 375
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.53 E-value=0.0041 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999874
No 376
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.53 E-value=0.0072 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998655
No 377
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.52 E-value=0.0084 Score=50.76 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..+..+.|+||+|+||||+++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999987653
No 378
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.52 E-value=0.0037 Score=62.33 Aligned_cols=43 Identities=30% Similarity=0.391 Sum_probs=32.8
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
+++.+ +.+-+|++++|+|++|+|||||++.|++......|.|.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 34444 67789999999999999999999999876543333333
No 379
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.52 E-value=0.0075 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 380
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.50 E-value=0.0094 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhh
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g 237 (382)
-+++++|++|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 381
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.50 E-value=0.0078 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 382
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.007 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 383
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.50 E-value=0.0076 Score=52.18 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 384
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.49 E-value=0.0068 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998755
No 385
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0071 Score=51.98 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
.++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 689999999999999999987
No 386
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.48 E-value=0.0079 Score=50.91 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 387
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.47 E-value=0.0077 Score=51.30 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=21.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999863
No 388
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.46 E-value=0.0041 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.-+++++|++|+|||||++.|++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999864
No 389
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.45 E-value=0.0068 Score=54.63 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+|.++.+-|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987664
No 390
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.44 E-value=0.0089 Score=53.44 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=26.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999988765
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.44 E-value=0.0091 Score=53.54 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+..+.|.|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 392
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.43 E-value=0.0084 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 393
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.42 E-value=0.015 Score=50.10 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=25.1
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
++..-+ -..|.-+.|.|+||+||||++..|..
T Consensus 7 lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 343333 34789999999999999999987764
No 394
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.42 E-value=0.0075 Score=52.32 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.=+++++|++|+|||||++.+.+-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3478999999999999999998754
No 395
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.41 E-value=0.0086 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 396
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.0037 Score=54.71 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=23.6
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
..|+.|.-..--+++++|++|+|||||++.+.+-
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3444443333347999999999999999999874
No 397
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.40 E-value=0.0081 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-+++++|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 398
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.39 E-value=0.013 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 399
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.39 E-value=0.01 Score=50.09 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-=+++++|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 447999999999999999999864
No 400
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.0081 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998644
No 401
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.36 E-value=0.0088 Score=53.30 Aligned_cols=28 Identities=39% Similarity=0.470 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+|.++.+-|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999987664
No 402
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.36 E-value=0.0079 Score=55.56 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 403
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.36 E-value=0.0081 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-.++++|++|+|||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999988764
No 404
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.35 E-value=0.0079 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 405
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.32 E-value=0.0092 Score=54.66 Aligned_cols=23 Identities=35% Similarity=0.327 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 406
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.31 E-value=0.0096 Score=51.21 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 407
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.31 E-value=0.0096 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
.++++|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 408
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.30 E-value=0.0095 Score=51.83 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999854
No 409
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.30 E-value=0.0096 Score=53.97 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+|.++.+.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987664
No 410
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.0099 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
=.++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 411
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.0098 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 412
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.29 E-value=0.0099 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.=+++++|++|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34478999999999999999998643
No 413
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.0092 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhh
Q 016798 215 GETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g 237 (382)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999984
No 414
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.27 E-value=0.009 Score=51.91 Aligned_cols=22 Identities=41% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 415
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.25 E-value=0.0098 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999988554
No 416
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.25 E-value=0.01 Score=54.62 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=23.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCCCce
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~ 245 (382)
.+++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544443
No 417
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.24 E-value=0.0088 Score=55.91 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.++|+|+.|+|||||++.|+|..-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 599999999999999999998753
No 418
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.24 E-value=0.0092 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 419
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.24 E-value=0.0093 Score=54.58 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.++|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.23 E-value=0.0098 Score=55.25 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
..+.|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999873
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.22 E-value=0.0098 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998763
No 422
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.22 E-value=0.0082 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998863
No 423
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.22 E-value=0.0084 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 424
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.22 E-value=0.011 Score=52.69 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+|.++.+-|++||||||.++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987664
No 425
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.21 E-value=0.0073 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
=+++++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998654
No 426
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.19 E-value=0.0096 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.|+|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 427
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.19 E-value=0.011 Score=50.66 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988875
No 428
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.16 E-value=0.011 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 429
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.16 E-value=0.0097 Score=53.59 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+|..++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999997663
No 430
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.16 E-value=0.011 Score=53.10 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+|..+.+.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987654
No 431
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.13 E-value=0.01 Score=57.20 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=29.2
Q ss_pred ccceeeEE---eeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 204 VLDQLNLH---IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 204 ~l~~isl~---i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.|+.+ +. +++|+.+.|.|++|+|||||+..++....
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555 33 88999999999999999999988776543
No 432
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.12 E-value=0.012 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.=+++++|++|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998853
No 433
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.11 E-value=0.071 Score=52.64 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEE
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILV 248 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~ 248 (382)
+..+++++|++|+||||+..-|+..+.-. .-+|.+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll 134 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 45689999999999999999888766543 224443
No 434
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.09 E-value=0.011 Score=52.02 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 435
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.09 E-value=0.01 Score=50.11 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
..+..+.|+||+|+||||+++.++..+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34667899999999999999999877643
No 436
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.07 E-value=0.01 Score=54.97 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.07 E-value=0.017 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-+++++|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 438
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.06 E-value=0.011 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 439
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.06 E-value=0.0098 Score=53.21 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=25.9
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+.++..++.|+||.||||+|..+.|+.-|
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345677889999999999999999999766
No 440
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.06 E-value=0.0076 Score=55.12 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++..++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999987763
No 441
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.04 E-value=0.012 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
...+.|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987653
No 442
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.00 E-value=0.008 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 443
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.00 E-value=0.015 Score=52.60 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++...+.|.||+|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345568899999999999999998754
No 444
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.94 E-value=0.013 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 445
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.93 E-value=0.012 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
++.=+++++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999975
No 446
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.90 E-value=0.0045 Score=61.27 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=29.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~ 252 (382)
..+++++|++|+||||++..|++.+.....+|.+-..|
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35899999999999999999999886554556654333
No 447
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.015 Score=51.60 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 448
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.89 E-value=0.019 Score=51.29 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=22.4
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
+++|+.+.|.|++|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999986543
No 449
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.88 E-value=0.0047 Score=56.40 Aligned_cols=31 Identities=42% Similarity=0.625 Sum_probs=23.9
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++....++| +.|.||+|+||||+++.+++.
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3334444445 889999999999999999874
No 450
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.87 E-value=0.013 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|+|++|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999888653
No 451
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.81 E-value=0.015 Score=54.77 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=24.8
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
-+++|+.+.|.|++|+|||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999988775
No 452
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.74 E-value=0.0073 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988853
No 453
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.70 E-value=0.016 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhh
Q 016798 215 GETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g 237 (382)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34789999999999999988874
No 454
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.69 E-value=0.016 Score=50.29 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999754
No 455
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.68 E-value=0.0036 Score=60.37 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=39.7
Q ss_pred CCChHHHHHHHHHHHcc-CCCCEEEEeC---cC------CCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 327 SLSGGQRQRLAIARALY-QNSSVLILDE---AT------SALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 327 ~lSgGq~QrialaRall-~~~~ililDE---pt------s~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
.+|+|++||..++++.. .+|++++||| |+ +++|......+.+.|+++.+ +.+++
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~il 323 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYI 323 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCE
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEE
Confidence 45677788888888875 5999999999 65 68999999999999987654 56655
No 456
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.019 Score=50.75 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 457
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.63 E-value=0.021 Score=49.98 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=26.8
Q ss_pred cceeeEEeeCCC---EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 205 LDQLNLHIRAGE---TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 205 l~~isl~i~~G~---~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++.+.-.+..|+ .+.|.||+|+||||+++.++..+.
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 333333344454 799999999999999999987664
No 458
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.59 E-value=0.011 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
+.=.++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344799999999999999999864
No 459
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.58 E-value=0.016 Score=56.54 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
..++|+||||||||||...|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998665
No 460
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.57 E-value=0.018 Score=54.12 Aligned_cols=26 Identities=35% Similarity=0.714 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45679999999999999999987653
No 461
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.56 E-value=0.02 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
=+++++|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998864
No 462
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.51 E-value=0.0084 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=4.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988765
No 463
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.39 E-value=0.021 Score=55.15 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5788999999999999999999987
No 464
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.34 E-value=0.022 Score=49.65 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 465
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.30 E-value=0.024 Score=50.06 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
|+++++=|.-||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999997764
No 466
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.28 E-value=0.026 Score=52.39 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+-.++++|.+|+|||||++.|.|-...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCcee
Confidence 347899999999999999999987643
No 467
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.12 E-value=0.024 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCcHHHHH-HHHhhC
Q 016798 214 AGETVALIGPSGGGKSTLA-KLLLRL 238 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~-~ll~g~ 238 (382)
+|.++.+.||.||||||++ +++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5889999999999999997 555444
No 468
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.10 E-value=0.022 Score=55.01 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..++++|++|+|||||++.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 67899999999999999999999864
No 469
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.08 E-value=0.029 Score=52.07 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999888665
No 470
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.03 E-value=0.025 Score=54.30 Aligned_cols=27 Identities=30% Similarity=0.243 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
.-+++|+|+.|+|||||++.|++.+..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999876643
No 471
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.03 E-value=0.15 Score=58.98 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=30.9
Q ss_pred Cccceee--EEeeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 203 LVLDQLN--LHIRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 203 ~~l~~is--l~i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
+.|+++. .-+++|+.+.+.||+|||||||+..+.-
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678887 5799999999999999999999998773
No 472
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.95 E-value=0.027 Score=53.94 Aligned_cols=26 Identities=46% Similarity=0.776 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..+.|.||+|+||||+++.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34567889999999999999999877
No 473
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.90 E-value=0.025 Score=57.01 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=25.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.|-.+.++|.+||||||+.++|+.-+.-
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999987754
No 474
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.88 E-value=0.033 Score=49.22 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++.|.||.||||+|..+.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999997763
No 475
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.82 E-value=0.052 Score=49.28 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=28.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-eEEEc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVD 249 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~i~~~ 249 (382)
+.+..+.|.||+|+|||++++.+........+ -+.++
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 35678999999999999999999988764433 34444
No 476
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.80 E-value=0.027 Score=55.58 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|||++|+|||||++.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998753
No 477
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.79 E-value=0.037 Score=52.31 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999865
No 478
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.77 E-value=0.029 Score=54.19 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=24.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+++|+.+.|.||+|+|||||+.-++.-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999997766443
No 479
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.75 E-value=0.036 Score=47.89 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|.||.|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998754
No 480
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.70 E-value=0.03 Score=49.60 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=25.4
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++...+.+.||.|+||||++..|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6777789999999999999999999886
No 481
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.66 E-value=0.031 Score=53.23 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..+..+.|.||+|+||||+++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999987763
No 482
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.65 E-value=0.032 Score=57.17 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+|.++.|.|.+||||||+.+.|...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999987653
No 483
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.65 E-value=0.033 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|||++++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999754
No 484
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.58 E-value=0.024 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+++||+.|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999854
No 485
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.58 E-value=0.026 Score=56.28 Aligned_cols=45 Identities=29% Similarity=0.351 Sum_probs=32.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC----CCCC--------ceEEEcCEeCCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY----DPLS--------GCILVDDHDVQNIR 257 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~----~~~~--------G~i~~~g~~~~~~~ 257 (382)
+.|=+++|+|++|+|||||++.|+|-- .+.. ..+.++|.++.=++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liD 278 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLD 278 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEE
Confidence 345569999999999999999998742 2222 35777887654333
No 486
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.57 E-value=0.036 Score=57.27 Aligned_cols=39 Identities=33% Similarity=0.389 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEe
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHD 252 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~ 252 (382)
+|.++.|+|.+||||||+.+.|...+... -..+.+||..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 46789999999999999999998765211 1245555433
No 487
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.57 E-value=0.026 Score=49.58 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=31.7
Q ss_pred HHHHHHHHccCCCCEEEEeCcCC-----CCCHHHHHHHHHHHHHHh
Q 016798 334 QRLAIARALYQNSSVLILDEATS-----ALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts-----~LD~~~~~~i~~~l~~~~ 374 (382)
=.-.|++.+..+|.....++|+. .+|....+++.+.+++..
T Consensus 165 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
T 3gj0_A 165 PFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQ 210 (221)
T ss_dssp HHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhh
Confidence 34478899999999888887766 788888888887776654
No 488
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.65 E-value=0.013 Score=50.87 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
+.=+++++|++|+|||||++.+.+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 344789999999999999987764
No 489
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.50 E-value=0.024 Score=56.32 Aligned_cols=37 Identities=38% Similarity=0.557 Sum_probs=28.7
Q ss_pred ceeeEEeeCCCE--EEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 206 DQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 206 ~~isl~i~~G~~--~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
+.+.-.++.|+. +.|.||+|+||||+++.|+......
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 344444555664 8999999999999999999887543
No 490
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.50 E-value=0.04 Score=52.22 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=25.5
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
--+++|..+.|.||.|+|||||+..++.-
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 36888999999999999999999988753
No 491
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.49 E-value=0.035 Score=50.72 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++...+.|.||+|+||||+++.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999998753
No 492
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.47 E-value=0.016 Score=56.22 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=29.2
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 207 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
|.=+.|-+|++.+|+|++|+|||||+..|+...
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 555788999999999999999999999888754
No 493
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.47 E-value=0.041 Score=50.76 Aligned_cols=26 Identities=35% Similarity=0.695 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+..+.|.||+|+||||+++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999987663
No 494
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.41 E-value=0.044 Score=50.98 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++...+.|.||+|+|||+|++.++..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344568888999999999999999876
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.31 E-value=0.0089 Score=51.77 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999887643
No 496
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.26 E-value=0.051 Score=51.11 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+..-+.|.||+|+|||++++.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 356679999999999999999998654
No 497
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.24 E-value=0.098 Score=50.50 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=30.3
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
+.+|+++|..+|+++++|||| |.++. ..+++....+++++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~~~g~~vi 238 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAAETGHLVF 238 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHHTTTCEEE
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHHhcCCEEE
Confidence 569999999999999999999 76653 34455554566665
No 498
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=93.14 E-value=0.05 Score=52.00 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=26.8
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
..+.++++---.++|||.+++|||||++.|.+-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345566666567999999999999999999864
No 499
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.14 E-value=0.057 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+.-+.|.||+|+|||+|+++++....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
No 500
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.13 E-value=0.053 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-..||.|+.||||||+.+.|+.-|
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
Done!