BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016799
         (382 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A6N|D Chain D, The Nucleosome Containing A Testis-Specific Histone
           Variant, Human H3t
 pdb|3A6N|H Chain H, The Nucleosome Containing A Testis-Specific Histone
           Variant, Human H3t
 pdb|3AFA|D Chain D, The Human Nucleosome Structure
 pdb|3AFA|H Chain H, The Human Nucleosome Structure
 pdb|3AV1|D Chain D, The Human Nucleosome Structure Containing The Histone
           Variant H3.2
 pdb|3AV1|H Chain H, The Human Nucleosome Structure Containing The Histone
           Variant H3.2
 pdb|3AV2|D Chain D, The Human Nucleosome Structure Containing The Histone
           Variant H3.3
 pdb|3AV2|H Chain H, The Human Nucleosome Structure Containing The Histone
           Variant H3.3
 pdb|3AYW|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k56q Mutation
 pdb|3AYW|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k56q Mutation
 pdb|3AZE|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k64q Mutation
 pdb|3AZE|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k64q Mutation
 pdb|3AZF|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k79q Mutation
 pdb|3AZF|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k79q Mutation
 pdb|3AZG|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k115q Mutation
 pdb|3AZG|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k115q Mutation
 pdb|3AZH|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k122q Mutation
 pdb|3AZH|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k122q Mutation
 pdb|3AZI|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k31q Mutation
 pdb|3AZI|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k31q Mutation
 pdb|3AZJ|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k44q Mutation
 pdb|3AZJ|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k44q Mutation
 pdb|3AZK|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k59q Mutation
 pdb|3AZK|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k59q Mutation
 pdb|3AZL|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k77q Mutation
 pdb|3AZL|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k77q Mutation
 pdb|3AZM|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k79q Mutation
 pdb|3AZM|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k79q Mutation
 pdb|3AZN|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k91q Mutation
 pdb|3AZN|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k91q Mutation
          Length = 129

 Score = 28.5 bits (62), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 188 IEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQPPIIASILAMGI--GAVPFLKKLIF 245
           + +A+ KD K  KR +     I++Y+ LK    + P    S  AMGI    V  + + I 
Sbjct: 22  VTKAQKKDGKKRKRSRKESYSIYVYKVLKQ---VHPDTGISSKAMGIMNSFVNDIFERIA 78

Query: 246 TDDAPLFFFTDSCIILGEAMIPCILLALGGNLV 278
            + + L  +     I    +   + L L G L 
Sbjct: 79  GEASRLAHYNKRSTITSREIQTAVRLLLPGELA 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.143    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,003,874
Number of Sequences: 62578
Number of extensions: 445949
Number of successful extensions: 953
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 5
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)