BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016799
(382 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
Length = 452
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 91/391 (23%), Positives = 169/391 (43%), Gaps = 48/391 (12%)
Query: 10 PCLIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIG 69
PCL+F ++G + L+ +I+ +P+ V+ + + LI ++A + R F I
Sbjct: 60 PCLVFEKVGNGLNLKMLIDLSLLPVFYVIISAASILISFLLAKLFRLTPRQRNFATACIT 119
Query: 70 IGNIGNVPLVLIAALCRDPSN------PFAEPETCSTQMTAYISFGQWVGAIILYTYVFH 123
N ++PL L+++L + P P+ +++ Y+ +G + ++Y +
Sbjct: 120 FQNSNSLPLALVSSLATTVKDLLWDKIPDDTPDKVASRGIMYLLIFSQLGQALRWSYGYR 179
Query: 124 MLAPPPEGTFDIDEESLPIKNSS-KDATPAPEQIPLLTEEAEPKD--SNNPKRGKDATPA 180
+L P + E+ LPI N S + E+I L + D N+ + + +T
Sbjct: 180 ILLSPNQ-----PEDPLPIGNRSWSHSDVNEEEIQNLLASSANVDGVQNSVQANEGSTVQ 234
Query: 181 TEQIPLLIEEAEPKDSKNPKRG-------KIAEVLIFIYEKLKLKQILQPPIIASILAMG 233
T+ + + ++ N + G KI++ ++ + + PP+ + +A+
Sbjct: 235 TDSSAISKNDNVQVETSNEEVGGFGAASSKISKFIVLLLD------FFSPPLYSLFIALF 288
Query: 234 IGAVPFLKKLIFTDDAPLFFFTDSCI-----ILGEAMIPCILLALGGNLVDG-----PGS 283
I VP L++ F + + F + I + G+ +P IL+ LG +L P
Sbjct: 289 IAVVPPLQRFFFEEGS----FVEGSITSGIRMAGQVAVPMILVVLGASLATDISKTEPTQ 344
Query: 284 AKLGFRTTAAII---FGRLVLVPPAGLGIVTLADKLGFIPA-GDKMFKFVLLLQHTMPTS 339
T II GR+V+VP A L +L I D +F V+ L PT+
Sbjct: 345 EVRKNNDTRVIIVCLLGRMVVVPLALLPAFSLLSYFSEISTVDDPVFVVVIFLLVGSPTA 404
Query: 340 VLSGAVSSLRGC-GREAAAVLFWVHIFAVFS 369
+ + L G RE A VL+W +AVF+
Sbjct: 405 IQLTQICQLNGVFERECAKVLWWS--YAVFT 433
>sp|P38355|YB8B_YEAST Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1
Length = 427
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 152/369 (41%), Gaps = 34/369 (9%)
Query: 7 LLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTII 66
L PCLIFS+L +++++ K+ E IPI L T + G +++ I+ F +
Sbjct: 52 LFTPCLIFSKLAKSLSMAKIFEIAIIPIFFGLTTGISFISGKIMSRILDLDKDETNFVVA 111
Query: 67 HIGIGNIGNVPLVLIAALCRDPSN------PFAEPETCSTQMTAYISFGQWVGAIILYTY 120
+ GN ++P+ L +L N P + +++ Y+ Q +G ++ +++
Sbjct: 112 NSVFGNSNSLPVSLTLSLAYTLPNLTWDQIPNDNRDNVASRGILYLLIFQQIGQMLRWSW 171
Query: 121 VFHMLAPPPEGTFDIDEESLPIKNSSKDATPA-PEQIPLLTEEAEPKDSNNPKRGKDATP 179
++ L +K S ++ P Q+ L E P N ++
Sbjct: 172 GYNKL----------------MKWSGENTQHMPPSQVQSLLERT-PNIDNEELVNEEQEE 214
Query: 180 ATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQPPIIASILAMGIGAVPF 239
S + KI + ++E+++ L PP+ + I A+ + A+
Sbjct: 215 QELLEEENNRMNSSFLSSSSIGDKIWQKSCTVFERIRAN--LNPPLYSMIFAVVVAAIGP 272
Query: 240 LKKLIFTDDAPL-FFFTDSCIILGEAMIPCILLALGGNLVDG----PGSAKLGFRTTAAI 294
L++ +F +D + F ++ LG IP IL+ LG NL P + +I
Sbjct: 273 LQRELFMEDGFINNTFAEAVTQLGSVSIPLILVVLGSNLYPSAEVFPKTVHHSKLLIGSI 332
Query: 295 IFGRLVLVPPAGLGIVTLADK-LGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCGR 353
I GR++L L I+ +A K + D +F V L P ++ ++ L
Sbjct: 333 I-GRMILPSCFLLPIIAIAVKYINVSILDDPIFLVVGFLLTVSPPAIQLTQITQLNEFFE 391
Query: 354 -EAAAVLFW 361
E A +LFW
Sbjct: 392 AEMADILFW 400
>sp|Q99252|ECM3_YEAST Protein ECM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=ECM3 PE=1 SV=1
Length = 613
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 23/141 (16%)
Query: 217 LKQILQPPIIASILAMGIGAVPFLKKLIFT-----------DDAP-LFFFTDSCIILGEA 264
LK L+P +A ILA+ I +P++K L T D+AP L F D +G A
Sbjct: 423 LKNCLRPCSMAVILALIIAFIPWVKALFVTTSNTPKIKQAPDNAPALTFIMDFTSYVGAA 482
Query: 265 MIPCILLALGGNLVDGPGSAKLG------FRTTAAIIFGRLVLVPPAGLGIVTLADKLGF 318
+P L+ LG L G K+G +++ ++F R ++P G+ K G+
Sbjct: 483 SVPFGLILLGATL----GRLKIGKLYPGFWKSAVVLVFLRQCIMPIFGVLWCDRLVKAGW 538
Query: 319 IP-AGDKMFKFVLLLQHTMPT 338
+ DKM FV + +PT
Sbjct: 539 LNWENDKMLLFVTAITWNLPT 559
>sp|P53932|YNJ5_YEAST Uncharacterized transporter YNL095C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YNL095C PE=1 SV=1
Length = 642
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 23/141 (16%)
Query: 217 LKQILQPPIIASILAMGIGAVPFLKKLIFT-----------DDA-PLFFFTDSCIILGEA 264
LK L+P +A I+A+ + +P++K L T D+A PL FF D +G A
Sbjct: 452 LKNCLRPCSMAVIIALTVAFIPWVKALFVTTANTPHISQAPDNAPPLSFFMDFTGYVGAA 511
Query: 265 MIPCILLALGGNLVDGPGSAKLG------FRTTAAIIFGRLVLVPPAGLGIVTLADKLGF 318
+P L+ LG L G K+G ++ ++ R ++P G+ K G+
Sbjct: 512 CVPFGLILLGATL----GRLKIGNLYPGFWKAAVTLVILRQCVMPIFGVLWCDRLVKAGW 567
Query: 319 IP-AGDKMFKFVLLLQHTMPT 338
+ D+M FV+ + +PT
Sbjct: 568 VNWQDDRMLLFVIAISWNLPT 588
>sp|P80544|PLS_STAAU Surface protein OS=Staphylococcus aureus GN=pls PE=1 SV=2
Length = 1637
Score = 36.6 bits (83), Expect = 0.32, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 126 APPPEGTFDIDEESLPIKNSSKDAT----PAPEQIPLLTEEAEPKDSNNPKRGKDATPAT 181
AP EGT ++ E P + AT P E+ TEEA PK K + PA
Sbjct: 128 APKAEGTDKVETEEAPKAEETDKATTEEAPKAEETDKATEEA-PKTEETDKATTEEAPAA 186
Query: 182 EQIPLLIEEAEPKDSKNPK 200
E+ E PK + K
Sbjct: 187 EETSKAATEEAPKAEETSK 205
>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus
GN=Pkd1l3 PE=2 SV=2
Length = 2201
Score = 34.7 bits (78), Expect = 1.3, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 126 APPPEGTFDIDEESLPIKNSSKDATPAPEQIPLLTEEAEPKDSNNPKRGKDATPATEQIP 185
+ PP+GT D S P + +S TPA P T E SN+P +G TP P
Sbjct: 354 SSPPQGTLDTPSSSSPPQGTSD--TPASSSPPQGTSETPA--SNSPPQGTSETPGFSSPP 409
>sp|Q3B577|DNAK_PELLD Chaperone protein DnaK OS=Pelodictyon luteolum (strain DSM 273)
GN=dnaK PE=3 SV=1
Length = 637
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 64 TIIHIGIGNIGNVPLVLIAALCRDPSNP---FAEPETCSTQMTAYISFGQWVGAIILYTY 120
T + +GI +G V LI A P+ F+ T + ++ G+ A+ T
Sbjct: 388 TPLSLGIETLGGVMTKLIDANTTIPTRKQEVFSTAGDNQTSVEVHVLQGERPLAVDNKTL 447
Query: 121 -VFHM--LAPPPEG------TFDIDEESLPIKNSSKDATPAPEQIPLLTEEAEPKDSNNP 171
FH+ + P P G TFDID + + S+KD EQ + ++ D+
Sbjct: 448 GRFHLGDIPPAPRGMPQIEVTFDIDSNGI-LNVSAKDKATGKEQSIKIESSSKLTDAEVE 506
Query: 172 KRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEK 214
K +DA E+ EE E K+S A+ LIF EK
Sbjct: 507 KMKEDAKVHAEEDQKRKEEIEVKNS--------ADSLIFSTEK 541
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.143 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,295,882
Number of Sequences: 539616
Number of extensions: 6663597
Number of successful extensions: 21539
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 21374
Number of HSP's gapped (non-prelim): 166
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)