Query 016799
Match_columns 382
No_of_seqs 111 out of 256
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 7E-100 1E-104 732.1 22.1 359 2-382 48-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 2.1E-45 4.5E-50 368.2 22.7 345 2-374 35-385 (385)
3 COG0679 Predicted permeases [G 99.9 1.6E-22 3.5E-27 198.4 14.5 272 2-380 38-310 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.9 5.3E-22 1.1E-26 195.2 16.1 278 2-376 40-319 (321)
5 PRK09903 putative transporter 99.8 2.6E-19 5.7E-24 175.7 17.5 271 2-377 38-310 (314)
6 TIGR00841 bass bile acid trans 97.3 0.00054 1.2E-08 66.7 7.4 109 264-379 12-122 (286)
7 COG0385 Predicted Na+-dependen 94.6 0.14 3.1E-06 50.5 8.2 109 263-379 41-152 (319)
8 PF01758 SBF: Sodium Bile acid 92.0 0.68 1.5E-05 42.0 7.8 107 266-379 4-113 (187)
9 PF13593 DUF4137: SBF-like CPA 90.2 1.5 3.3E-05 43.3 8.8 140 225-378 4-147 (313)
10 TIGR00832 acr3 arsenical-resis 89.6 3.1 6.7E-05 41.4 10.5 138 225-379 13-158 (328)
11 TIGR00841 bass bile acid trans 80.6 11 0.00023 36.7 9.2 49 30-79 195-243 (286)
12 COG0385 Predicted Na+-dependen 67.8 11 0.00023 37.6 5.5 45 31-75 224-268 (319)
13 TIGR00832 acr3 arsenical-resis 59.8 10 0.00022 37.8 3.7 51 31-84 247-297 (328)
14 PRK11677 hypothetical protein; 45.4 24 0.00053 30.6 3.3 22 36-57 6-27 (134)
15 PF06295 DUF1043: Protein of u 39.1 30 0.00065 29.6 3.0 22 36-57 2-23 (128)
16 PF06305 DUF1049: Protein of u 35.9 55 0.0012 24.2 3.7 25 30-54 18-42 (68)
17 PF03812 KdgT: 2-keto-3-deoxyg 35.6 1.2E+02 0.0027 30.0 6.9 69 13-89 54-123 (314)
18 PF11120 DUF2636: Protein of u 34.0 63 0.0014 24.3 3.5 28 22-55 2-29 (62)
19 TIGR03082 Gneg_AbrB_dup membra 31.6 1.4E+02 0.003 26.2 6.0 47 12-58 55-105 (156)
20 COG3763 Uncharacterized protei 29.8 92 0.002 24.0 3.8 25 28-52 2-26 (71)
21 KOG2262 Sexual differentiation 29.4 6.7 0.00015 42.4 -3.1 95 23-127 438-534 (761)
22 PF03601 Cons_hypoth698: Conse 27.5 78 0.0017 31.2 4.1 97 17-128 69-172 (305)
23 PF12534 DUF3733: Leucine-rich 27.0 87 0.0019 23.8 3.3 43 18-60 12-59 (65)
24 PRK12460 2-keto-3-deoxyglucona 26.8 1.7E+02 0.0037 29.1 6.2 81 11-104 52-140 (312)
25 PRK01844 hypothetical protein; 26.2 1.1E+02 0.0025 23.6 3.9 25 29-53 3-27 (72)
26 PF05684 DUF819: Protein of un 23.8 3.5E+02 0.0076 27.5 8.1 71 12-86 275-345 (378)
27 COG3105 Uncharacterized protei 20.9 1.2E+02 0.0027 26.2 3.5 22 36-57 11-32 (138)
28 TIGR00939 2a57 Equilibrative N 20.8 3.1E+02 0.0068 28.3 7.2 18 290-307 339-356 (437)
29 PF09964 DUF2198: Uncharacteri 20.5 64 0.0014 25.1 1.5 13 1-13 1-13 (74)
30 PF05145 AmoA: Putative ammoni 20.2 2.4E+02 0.0052 27.9 6.0 48 12-59 33-84 (318)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=6.9e-100 Score=732.07 Aligned_cols=359 Identities=42% Similarity=0.770 Sum_probs=302.7
Q ss_pred cEEEEehhhHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccCCCchHHHHH
Q 016799 2 QLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLI 81 (382)
Q Consensus 2 ~lv~~vFlP~LiFskla~~it~~~i~~~w~ipv~~ll~~~ig~~lg~~v~ki~~~P~~~~~~vi~~~~fgN~~~LPl~li 81 (382)
|+||++|+|||+|+|||+++|+|++.+|||||||+++++++|.++||+++|++|+|+++||++++||+|||+||||++++
T Consensus 48 ~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv 127 (408)
T KOG2722|consen 48 KLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILV 127 (408)
T ss_pred heeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCChhhhhhhHHHHHHHHHHHhhhheeeeecccccCCCCCC-CCcccCCCCccCCCCCCCCCCCCCCccc
Q 016799 82 AALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLAPPPEGT-FDIDEESLPIKNSSKDATPAPEQIPLLT 160 (382)
Q Consensus 82 ~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~v~~~~~ws~~y~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
+|+|+++++||||+|+|++||++|++++||+|++++|||+||++.++..+. .+.++++.+.. .++++.
T Consensus 128 ~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y~~~~~p~~~~~~~~~~~~Ve~~---------~~~~~~-- 196 (408)
T KOG2722|consen 128 PALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTYVYRMLLPPNLELMSALKESPVEAL---------LESVPQ-- 196 (408)
T ss_pred HHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEeeeecCCchhhhhcCChhhhhhh---------hhccCC--
Confidence 999999999999999999999999999999999999999999999875321 11111111100 000100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCcchhHHHHHHHHHhhhhccccCchHHHHHHHHHhcccccc
Q 016799 161 EEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQPPIIASILAMGIGAVPFL 240 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~Pp~ia~ilg~iig~iP~L 240 (382)
++.+.+ .+++.+.+...+++.++++. ..++++.+++.+.+.++.++|++++||++|+++|+++|.||||
T Consensus 197 ------~s~e~~----~~~~~k~~ll~~~en~~~~~-~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pL 265 (408)
T KOG2722|consen 197 ------PSVESD----EDSTCKTLLLASKENRNNQV-VGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPL 265 (408)
T ss_pred ------CCcccc----cccccccccccccccCCCce-eeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHH
Confidence 000000 00000011111111111111 1122233333333445666999999999999999999999999
Q ss_pred hhhccccCCcchhHHHHHHHhcCchhHHHHHhhccccCCCCCCCCCCchhhHHHHHHHHHhhhhhHHHHHHHHHHhCCcc
Q 016799 241 KKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIP 320 (382)
Q Consensus 241 k~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~RlillPiigi~iv~~a~k~g~i~ 320 (382)
|+++|++++|++++||+++++|+++|||++++|||||.+|+++|.++.|++++++++||+++|+.|+++|..|+|+|.++
T Consensus 266 r~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls 345 (408)
T KOG2722|consen 266 RRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLS 345 (408)
T ss_pred HHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhcccchhHHHHHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016799 321 AGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLNLMF 382 (382)
Q Consensus 321 ~~Dpl~~FVlll~~~~PpA~~l~~itql~~~~-~e~s~ilfw~Y~~~~vslt~~~~~~l~l~~ 382 (382)
.|||+|+||++||+++|||||++++||+||++ +|||++|||+|+++.+++|+|+++|+|+++
T Consensus 346 ~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 346 TDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred CCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 77999999999999999999999999999999 999999999999999999999999999974
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=2.1e-45 Score=368.20 Aligned_cols=345 Identities=30% Similarity=0.502 Sum_probs=256.4
Q ss_pred cEEEEehhhHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccCCCchHHHHH
Q 016799 2 QLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLI 81 (382)
Q Consensus 2 ~lv~~vFlP~LiFskla~~it~~~i~~~w~ipv~~ll~~~ig~~lg~~v~ki~~~P~~~~~~vi~~~~fgN~~~LPl~li 81 (382)
|+|+++++|||+|++++++.+.+++.++|++++++.+.+++++++++++.|++|.|+++++....+|+|+|++++|+.++
T Consensus 35 ~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~ 114 (385)
T PF03547_consen 35 KLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPIL 114 (385)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEecccCCcchhhHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCChhhhhhhHHHHHHHHHHHhhhheeeeecccccCCCCCCCCcccCCCCccCCCCCC-----CCCCCCC
Q 016799 82 AALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLAPPPEGTFDIDEESLPIKNSSKDA-----TPAPEQI 156 (382)
Q Consensus 82 ~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~v~~~~~ws~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 156 (382)
++++.+ +|++|++++.++.+++.|++++.+++.+++++++.++++...++.++++ .+.+++.
T Consensus 115 ~~l~g~-------------~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T PF03547_consen 115 QALFGE-------------RGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSS 181 (385)
T ss_pred HHHhcc-------------hhhhhehHHHHhhHHHHHHHHHHhhcccccccccccccccccccccccccCCccccCCccc
Confidence 999863 8999999999999999999999999876543322221110000000000 0000000
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCcchhHHHHHHHHHhhhhccccCchHHHHHHHHHhcc
Q 016799 157 PLLTEEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQPPIIASILAMGIGA 236 (382)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~Pp~ia~ilg~iig~ 236 (382)
+...++....+ .+....+...+.+.++... .++++ +.++..+.+.++..+....+.-.+.++|||++|+++|+++++
T Consensus 182 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~ 258 (385)
T PF03547_consen 182 PSSTEEEIDED-GSPSSTPSQSSASAPSSVS-TSPSP-SNSTGAEQKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGL 258 (385)
T ss_pred ccccccccccC-Ccccccccccccccchhhc-cCCcc-cccchhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 00000000000 0000000000000000000 00000 001111111111111111222368999999999999999999
Q ss_pred cccchhhccccCCcchhHHHHHHHhcCchhHHHHHhhccccCCCCCCCCCCchhhHHHHHHHHHhhhhhHHHHHHHHHHh
Q 016799 237 VPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKL 316 (382)
Q Consensus 237 iP~Lk~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~RlillPiigi~iv~~a~k~ 316 (382)
+|+.|.++++ .+++++++++|++++|++++++|++|+++++.++.+++.....++.||+++|++++++++...
T Consensus 259 ~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~-- 331 (385)
T PF03547_consen 259 IPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLG-- 331 (385)
T ss_pred HHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence 9999999998 899999999999999999999999999988777788888888899999999999999998643
Q ss_pred CCccCCChHHHHHHHhcccchhHHHHHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHH
Q 016799 317 GFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWI 374 (382)
Q Consensus 317 g~i~~~Dpl~~FVlll~~~~PpA~~l~~itql~~~~-~e~s~ilfw~Y~~~~vslt~~~ 374 (382)
- |+....+++++.++|||++...+|+.||.+ +++++.++|+|+++.+++|+|+
T Consensus 332 ----l-~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 332 ----L-DGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred ----C-CHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 2 666788999999999999999999999998 9999999999999999999995
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=198.37 Aligned_cols=272 Identities=22% Similarity=0.262 Sum_probs=221.5
Q ss_pred cEEEEehhhHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccCCCchHHHHH
Q 016799 2 QLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLI 81 (382)
Q Consensus 2 ~lv~~vFlP~LiFskla~~it~~~i~~~w~ipv~~ll~~~ig~~lg~~v~ki~~~P~~~~~~vi~~~~fgN~~~LPl~li 81 (382)
++|+++++|||+|++++++-..++ .++..+++..+.+...+.+..++..|.+|.++++++....+.+|+|+|++++.+.
T Consensus 38 ~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~ 116 (311)
T COG0679 38 RLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVA 116 (311)
T ss_pred HHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHH
Confidence 568899999999999999987777 8888888888888888888888888999999999999999999999999996655
Q ss_pred HHhhcCCCCCCCChhhhhhhHHHHHHHHHHHhhhheeeeecccccCCCCCCCCcccCCCCccCCCCCCCCCCCCCCcccc
Q 016799 82 AALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLAPPPEGTFDIDEESLPIKNSSKDATPAPEQIPLLTE 161 (382)
Q Consensus 82 ~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~v~~~~~ws~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (382)
.++ | .++|++|.++++++.++.+|++|+.++.....+
T Consensus 117 ~~~-------~------G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~------------------------------ 153 (311)
T COG0679 117 LSL-------F------GEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG------------------------------ 153 (311)
T ss_pred HHH-------c------CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------------------
Confidence 444 3 367999999999999999999998777653210
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCcchhHHHHHHHHHhhhhccccCchHHHHHHHHHhcccccch
Q 016799 162 EAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQPPIIASILAMGIGAVPFLK 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~Pp~ia~ilg~iig~iP~Lk 241 (382)
+ + +...+.. .+-+.||+.+|.++|++.....
T Consensus 154 ------------------------------~--~---------~~~~~~~-----~~~~~nP~i~a~i~g~~~~~~~--- 184 (311)
T COG0679 154 ------------------------------T--N---------KSLLSVL-----KKLLTNPLIIALILGLLLNLLG--- 184 (311)
T ss_pred ------------------------------c--h---------hHHHHHH-----HHHHhCcHHHHHHHHHHHHHcC---
Confidence 0 0 0111111 3567899999999999988765
Q ss_pred hhccccCCcchhHHHHHHHhcCchhHHHHHhhccccCCCCCCCCCCchhhHHHHHHHHHhhhhhHHHHHHHHHHhCCccC
Q 016799 242 KLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPA 321 (382)
Q Consensus 242 ~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~RlillPiigi~iv~~a~k~g~i~~ 321 (382)
+.-. .++.++++++|++++||+++++|..|+. .+.++...+.+......|+++.|++..++.+. .|+
T Consensus 185 ---i~lP---~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~---~~l--- 251 (311)
T COG0679 185 ---ISLP---APLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPIILIALSLKLLLAPLVALLVAKL---LGL--- 251 (311)
T ss_pred ---CCCc---HHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhHHHHHHHHHHHHHHHHHHHHHH---cCC---
Confidence 2211 2899999999999999999999999997 44555567888888888999999999986653 243
Q ss_pred CChHHHHHHHhcccchhHHHHHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016799 322 GDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLNL 380 (382)
Q Consensus 322 ~Dpl~~FVlll~~~~PpA~~l~~itql~~~~-~e~s~ilfw~Y~~~~vslt~~~~~~l~l 380 (382)
++...-|+.++.++|+|.|-..+++-++.. +..+...+-+=.++.++++.|..++.+.
T Consensus 252 -~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~~ 310 (311)
T COG0679 252 -SGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLRS 310 (311)
T ss_pred -ChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444558999999999999999999999987 8888888889999999999988877653
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.88 E-value=5.3e-22 Score=195.21 Aligned_cols=278 Identities=19% Similarity=0.237 Sum_probs=208.2
Q ss_pred cEEEEehhhHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCcEEEEEeccCCCchHHHH
Q 016799 2 QLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLIGLVIAY-IVRPPYPYFKFTIIHIGIGNIGNVPLVL 80 (382)
Q Consensus 2 ~lv~~vFlP~LiFskla~~it~~~i~~~w~ipv~~ll~~~ig~~lg~~v~k-i~~~P~~~~~~vi~~~~fgN~~~LPl~l 80 (382)
|+++++.+|||+|+++++.-.-++....+...+.....+...++++|++.| .+|.+++.++....+++++|++.+-+-+
T Consensus 40 ~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl 119 (321)
T TIGR00946 40 RFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPL 119 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHH
Confidence 678899999999999998533323444444445455667788999999998 8899999999999999999999999999
Q ss_pred HHHhhcCCCCCCCChhhhhhhHHHHHHHHHHHhhhheeeeecccccCCCCCCCCcccCCCCccCCCCCCCCCCCCCCccc
Q 016799 81 IAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLAPPPEGTFDIDEESLPIKNSSKDATPAPEQIPLLT 160 (382)
Q Consensus 81 i~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~v~~~~~ws~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
++++-.+++ . .++.|...+.....+..|+.++-+.....++ +
T Consensus 120 ~~~~~G~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------------- 161 (321)
T TIGR00946 120 LLSLFGEEG---------A-KILIAALFIDTGAVLMTIALGLFLVSEDGAG--G-------------------------- 161 (321)
T ss_pred HHHHhcccc---------h-hhhHHHHHHHhccchhHHHHHHHHhcccccc--c--------------------------
Confidence 999964211 1 1356666666666777788876433211000 0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCcchhHHHHHHHHHhhhhccccCchHHHHHHHHHhcccccc
Q 016799 161 EEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQPPIIASILAMGIGAVPFL 240 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~Pp~ia~ilg~iig~iP~L 240 (382)
++ +..+.++.+.... .+-+.||+.+|.++|+++.....
T Consensus 162 -------------------------------~~------~~~~~~~~~~~~~----~~~~~nP~iia~i~Gl~~~~~~i- 199 (321)
T TIGR00946 162 -------------------------------EG------SGESTRLMLIFVW----KKLIKFPPLWAPLLSVILSLVGF- 199 (321)
T ss_pred -------------------------------cc------cchhHHHHHHHHH----HHHHhCCChHHHHHHHHHHHHhh-
Confidence 00 0001111111111 23457899999999999998762
Q ss_pred hhhccccCCcchhHHHHHHHhcCchhHHHHHhhccccCCCCCCCCCCchhhHHHHHHHHHhhhhhHHHHHHHHHHhCCcc
Q 016799 241 KKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIP 320 (382)
Q Consensus 241 k~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~RlillPiigi~iv~~a~k~g~i~ 320 (382)
+ .=.++.++++++|++++|+.++++|..|.. +..+.+++.+...++.|+++.|++..++... .+
T Consensus 200 ~--------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~--~~~~~~~~~~~~~~~~klil~P~i~~~~~~~------~~ 263 (321)
T TIGR00946 200 K--------MPGLILKSISILSGATTPMALFSLGLALSP--RKIKLGVRDAILALIVRFLVQPAVMAGISKL------IG 263 (321)
T ss_pred c--------CcHHHHHHHHHHHHHHHHHHHHHHHHhhCh--hhhccChHHHHHHHHHHHHHHHHHHHHHHHH------hC
Confidence 1 115899999999999999999999999974 2223356788888999999999999776652 23
Q ss_pred CCChHHHHHHHhcccchhHHHHHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHH
Q 016799 321 AGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIIL 376 (382)
Q Consensus 321 ~~Dpl~~FVlll~~~~PpA~~l~~itql~~~~-~e~s~ilfw~Y~~~~vslt~~~~~ 376 (382)
. |+..+-++.++.++|+|.+...+++.||.+ ++++...+++.+++.+++|+|+.+
T Consensus 264 l-~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 264 L-RGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred C-ChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 778889999999999999999999999988 999999999999999999999875
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.82 E-value=2.6e-19 Score=175.74 Aligned_cols=271 Identities=15% Similarity=0.144 Sum_probs=199.3
Q ss_pred cEEEEehhhHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCcEEEEEeccCCCchHHHH
Q 016799 2 QLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLIGLVIAY-IVRPPYPYFKFTIIHIGIGNIGNVPLVL 80 (382)
Q Consensus 2 ~lv~~vFlP~LiFskla~~it~~~i~~~w~ipv~~ll~~~ig~~lg~~v~k-i~~~P~~~~~~vi~~~~fgN~~~LPl~l 80 (382)
|+++++.+||++|+++.+. +.+++.+-|.+.+..++.+...++++|++.+ ..|-+++.++....+++++|+|++-+-+
T Consensus 38 ~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl 116 (314)
T PRK09903 38 KLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAV 116 (314)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHH
Confidence 5788999999999999875 6666653344567777888888888888875 6677777777788888999999999999
Q ss_pred HHHhhcCCCCCCCChhhhhhhHHHHHHHHHHHhhhheeeeecccccCCCCCCCCcccCCCCccCCCCCCCCCCCCCCccc
Q 016799 81 IAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLAPPPEGTFDIDEESLPIKNSSKDATPAPEQIPLLT 160 (382)
Q Consensus 81 i~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~v~~~~~ws~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
++++- | |+.. -|+.|..++. +.+++.|++|.-.++..+.+ +
T Consensus 117 ~~~~~-------G--~~~~-~~~~~a~~~~-~~~~~~~~~g~~~~~~~~~~--~-------------------------- 157 (314)
T PRK09903 117 LDPIY-------G--DSVS-TGLVVAIISI-IVNAITIPIGLYLLNPSSGA--D-------------------------- 157 (314)
T ss_pred HHHHc-------C--chhh-hhhHHHHHHH-HHHHHHHHHHHHHHcccccc--c--------------------------
Confidence 99984 3 2111 1555555543 56888898886555432100 0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCcchhHHHHHHHHHhhhhccccCchHHHHHHHHHhcccccc
Q 016799 161 EEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQPPIIASILAMGIGAVPFL 240 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~Pp~ia~ilg~iig~iP~L 240 (382)
++ + +..++.+ .+-+.||+.+|.++|+++.+..
T Consensus 158 -------------------------------~~-~------~~~~~~l--------~~~~~nP~iia~~~gl~~~l~~-- 189 (314)
T PRK09903 158 -------------------------------GK-K------NSNLSAL--------ISAAKEPVVWAPVLATILVLVG-- 189 (314)
T ss_pred -------------------------------cc-c------chHHHHH--------HHHHhchHHHHHHHHHHHHHcC--
Confidence 00 0 0001111 1336789999999999976532
Q ss_pred hhhccccCCcchhHHHHHHHhcCchhHHHHHhhccccCCCCCCCCCCchhhHHHHHHHHHhhhhhHHHHHHHHHHhCCcc
Q 016799 241 KKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIP 320 (382)
Q Consensus 241 k~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~RlillPiigi~iv~~a~k~g~i~ 320 (382)
+ ..-.++.++++++|++++|+.++.+|+.|++.... .. +......+.|+++.|++..++... .|+
T Consensus 190 ----i---~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~--~~-~~~~~~~~~Kli~~P~i~~~~~~~---~~l-- 254 (314)
T PRK09903 190 ----V---KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE--FS-AEIAYNTFLKLILMPLALLLVGMA---CHL-- 254 (314)
T ss_pred ----C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc-HHHHHHHHHHHHHHHHHHHHHHHH---cCC--
Confidence 1 11159999999999999999999999999873221 22 344566788999999988665542 243
Q ss_pred CCChHHHHHHHhcccchhHHHHHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016799 321 AGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILY 377 (382)
Q Consensus 321 ~~Dpl~~FVlll~~~~PpA~~l~~itql~~~~-~e~s~ilfw~Y~~~~vslt~~~~~~ 377 (382)
|+...=+++++.++|+|.+-..+++-||.. +.+++..+.+-.++.+++|+|+.++
T Consensus 255 --~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 255 --NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred --CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777999999999999999999999977 8888888899999999999999863
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.34 E-value=0.00054 Score=66.71 Aligned_cols=109 Identities=12% Similarity=0.091 Sum_probs=87.8
Q ss_pred chhHHHHHhhccccCCCCCCCCC-CchhhHHHHHHHHHhhhhhHHHHHHHHHHhCCccCCChHHHHHHHhcccchhHHHH
Q 016799 264 AMIPCILLALGGNLVDGPGSAKL-GFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLS 342 (382)
Q Consensus 264 a~VPl~llvLGa~L~~g~~~s~~-~~~~iv~i~~~RlillPiigi~iv~~a~k~g~i~~~Dpl~~FVlll~~~~PpA~~l 342 (382)
..+..+++.+|.+|....-.+.. .+|.+...++.|++++|+++.++.+.. + .||.+...+++..++|+|.+.
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~---~----l~~~~~~glvL~~~~P~~~~s 84 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF---K----LPPELAVGVLIVGCCPGGTAS 84 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh---C----CCHHHHHHHHheeeCCCchHH
Confidence 33777889999999742111112 356778888899999999998776532 2 389999999999999999999
Q ss_pred HHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016799 343 GAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLN 379 (382)
Q Consensus 343 ~~itql~~~~-~e~s~ilfw~Y~~~~vslt~~~~~~l~ 379 (382)
..+|+.+|.. +-.++....+-+++++++|+|+.++..
T Consensus 85 ~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 85 NVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866 777777779999999999999998865
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.59 E-value=0.14 Score=50.51 Aligned_cols=109 Identities=20% Similarity=0.165 Sum_probs=82.8
Q ss_pred CchhHHHHHhhccccCCCCC-CCCC-CchhhHHHHHHHHHhhhhhHHHHHHHHHHhCCccCCChHHHHHHHhcccchhHH
Q 016799 263 EAMIPCILLALGGNLVDGPG-SAKL-GFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSV 340 (382)
Q Consensus 263 ~a~VPl~llvLGa~L~~g~~-~s~~-~~~~iv~i~~~RlillPiigi~iv~~a~k~g~i~~~Dpl~~FVlll~~~~PpA~ 340 (382)
..++-++++..|.+|.+ .+ ...+ .||..+..++.-++++|++|+++.+.. +- ||-..-=+++..|.|..+
T Consensus 41 ~~~l~lImf~mGl~Ls~-~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~------~l-~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 41 PIALALIMFGMGLTLSR-EDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLF------PL-PPELAVGLLLLGCCPGGV 112 (319)
T ss_pred HHHHHHHHHhcCCCCCH-HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHc------CC-CHHHHHhHHheeeCCCch
Confidence 34566788899999986 22 1222 488999999999999999999999843 34 888888889999999999
Q ss_pred HHHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016799 341 LSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLN 379 (382)
Q Consensus 341 ~l~~itql~~~~-~e~s~ilfw~Y~~~~vslt~~~~~~l~ 379 (382)
+.-.+|++.+-. .-+-..-.-+-+++++..|+++.+|+.
T Consensus 113 ~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 113 ASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998522 333233335777888888888888763
No 8
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=91.99 E-value=0.68 Score=41.99 Aligned_cols=107 Identities=16% Similarity=0.231 Sum_probs=72.2
Q ss_pred hHHHHHhhccccCCCCCCCCC--CchhhHHHHHHHHHhhhhhHHHHHHHHHHhCCccCCChHHHHHHHhcccchhHHHHH
Q 016799 266 IPCILLALGGNLVDGPGSAKL--GFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSG 343 (382)
Q Consensus 266 VPl~llvLGa~L~~g~~~s~~--~~~~iv~i~~~RlillPiigi~iv~~a~k~g~i~~~Dpl~~FVlll~~~~PpA~~l~ 343 (382)
+-..++.+|-++.- .+-.+. ..|.++..++..++++|+++.++.... .+ +||-+..-+++..+.|.+...-
T Consensus 4 l~~~mf~~gl~~~~-~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~-~~~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 4 LFLMMFSMGLSLTF-EDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LP-LSPALALGLLLVAACPGGPASN 76 (187)
T ss_dssp HHHHHHHHHHC--G-GGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT---HHHHHHHHHHHHS-B-THHH
T ss_pred hhHHHHHhhhcccH-HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hc-CCHHHHHHHHHHhcCCcHHHHH
Confidence 44567777777753 111111 357777788999999999999988432 22 4888999999999999999998
Q ss_pred HhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016799 344 AVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLN 379 (382)
Q Consensus 344 ~itql~~~~-~e~s~ilfw~Y~~~~vslt~~~~~~l~ 379 (382)
.+|.+.|-. .-..+.-...-..+.+.+|+|..++..
T Consensus 77 ~~t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 77 VFTYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 998887744 433344447779999999999887753
No 9
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=90.23 E-value=1.5 Score=43.30 Aligned_cols=140 Identities=20% Similarity=0.204 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcccccchhhccccCCcchhHHHHHHHhcCchhHHHHHhhccccCCCC-CCCCCCchhhHHHHHHHHHhhh
Q 016799 225 IIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGP-GSAKLGFRTTAAIIFGRLVLVP 303 (382)
Q Consensus 225 ~ia~ilg~iig~iP~Lk~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~-~~s~~~~~~iv~i~~~RlillP 303 (382)
.++.++++.+|..=|-... ..++++. ++.-...|..+.++-|.+|.... +..--.||....+...=+++.|
T Consensus 4 l~~l~~ai~la~~~P~~g~---~~~~~~~-----~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 4 LLGLLLAILLAYLFPAPGA---AGGVIKP-----EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred HHHHHHHHHHHHHcCcccc---cCCccch-----hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 5666777777654433211 1122221 23333448999999999987421 1222258999999999999999
Q ss_pred hhHHHHHHHHHHhCCccCCChHHHHHHHhcccchhHHHHH-HhhhhcCchHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 016799 304 PAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSG-AVSSLRGCGREAAAVLF--WVHIFAVFSMAGWIILYL 378 (382)
Q Consensus 304 iigi~iv~~a~k~g~i~~~Dpl~~FVlll~~~~PpA~~l~-~itql~~~~~e~s~ilf--w~Y~~~~vslt~~~~~~l 378 (382)
+++.++...... + .|+-+..=+++..|+||.++.+ .+|+..|- ++..+++. -+-.+.++..|+|+.+|+
T Consensus 76 ll~~~~~~l~~~--~---~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgG-N~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 76 LLGFGLSRLFPA--F---LPPELALGLLILACLPTTVSSSVVLTRLAGG-NVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHhhc--c---CCHHHHHHHHHHhhCCchhhHHHHHHHHcCC-CHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 999998885532 3 2666999999999999998875 57776642 22222222 678888999999998887
No 10
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=89.59 E-value=3.1 Score=41.40 Aligned_cols=138 Identities=15% Similarity=0.058 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcccccchhhccccCCcchhHHHHHHHhcCchhH------HHHHhhccccCCC-CCCCCCCchhhHHHHHH
Q 016799 225 IIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIP------CILLALGGNLVDG-PGSAKLGFRTTAAIIFG 297 (382)
Q Consensus 225 ~ia~ilg~iig~iP~Lk~lf~~~~~pL~~i~ds~~~lG~a~VP------l~llvLGa~L~~g-~~~s~~~~~~iv~i~~~ 297 (382)
..++++|+++|..-|-. ..++... .+.....| .+++.+|-+|... .+..--.+|.+....+.
T Consensus 13 ~~~~i~~~~~g~~~P~~---------~~~~~~~--~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~ 81 (328)
T TIGR00832 13 FLAIAAGVGLGVLFPSV---------FQALAAL--EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFI 81 (328)
T ss_pred HHHHHHHHHHHHhcccc---------HHHHHHH--HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHH
Confidence 46677788888754321 1122110 11233444 4677777888631 11111146888888999
Q ss_pred HHHhhhhhHHHHHHHHHHhCCccCCChHHHHHHHhcccchhHHHHHHhhhhcCchHHHHHHH-HHHHHHHHHHHHHHHHH
Q 016799 298 RLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCGREAAAVL-FWVHIFAVFSMAGWIIL 376 (382)
Q Consensus 298 RlillPiigi~iv~~a~k~g~i~~~Dpl~~FVlll~~~~PpA~~l~~itql~~~~~e~s~il-fw~Y~~~~vslt~~~~~ 376 (382)
-++++|+++.++.+.. .+ ++|-+..=+++..|.|.+.....+|.+.+-....|..+ -..=.++.+..|.+..+
T Consensus 82 qfvi~Plla~~l~~l~-----~~-~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~l 155 (328)
T TIGR00832 82 NWIIGPFLMFLLAWLF-----LR-DLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWL 155 (328)
T ss_pred HHHHHHHHHHHHHHHH-----cC-CCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887742 12 37779999999999999998888888876332333333 35666677777777766
Q ss_pred HHH
Q 016799 377 YLN 379 (382)
Q Consensus 377 ~l~ 379 (382)
|+.
T Consensus 156 l~~ 158 (328)
T TIGR00832 156 LLG 158 (328)
T ss_pred HHh
Confidence 653
No 11
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=80.64 E-value=11 Score=36.67 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccCCCchHHH
Q 016799 30 WFIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLV 79 (382)
Q Consensus 30 w~ipv~~ll~~~ig~~lg~~v~ki~~~P~~~~~~vi~~~~fgN~~~LPl~ 79 (382)
|-+-+-.++...+|+.+||++.|.+|.+++.+.-+.-.++..|++ +-+.
T Consensus 195 ~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~ 243 (286)
T TIGR00841 195 PLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCST 243 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHH
Confidence 334444677899999999999999999998999999999999988 4433
No 12
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=67.75 E-value=11 Score=37.56 Aligned_cols=45 Identities=24% Similarity=0.242 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccCCCc
Q 016799 31 FIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGN 75 (382)
Q Consensus 31 ~ipv~~ll~~~ig~~lg~~v~ki~~~P~~~~~~vi~~~~fgN~~~ 75 (382)
.+-+.+.++..+|+.+||...|.++.+++.+.-+.-|++-.|.+.
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~l 268 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGL 268 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHH
Confidence 466778888999999999999999999999999999999999863
No 13
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=59.77 E-value=10 Score=37.77 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccCCCchHHHHHHHh
Q 016799 31 FIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAAL 84 (382)
Q Consensus 31 ~ipv~~ll~~~ig~~lg~~v~ki~~~P~~~~~~vi~~~~fgN~~~LPl~li~sl 84 (382)
.+-.-.++++.+|+.+|+.+.|.+|.+++.+.-+.-+++-.|. .+++.-|.
T Consensus 247 ~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~---~lai~lA~ 297 (328)
T TIGR00832 247 LIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNF---ELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhH---HHHHHHHH
Confidence 3333466889999999999999999999999999999888774 56666665
No 14
>PRK11677 hypothetical protein; Provisional
Probab=45.37 E-value=24 Score=30.60 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 016799 36 VVLGTISGSLIGLVIAYIVRPP 57 (382)
Q Consensus 36 ~ll~~~ig~~lg~~v~ki~~~P 57 (382)
+++.+++|.++|+++.|++..-
T Consensus 6 a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccch
Confidence 4488999999999999986544
No 15
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.07 E-value=30 Score=29.58 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 016799 36 VVLGTISGSLIGLVIAYIVRPP 57 (382)
Q Consensus 36 ~ll~~~ig~~lg~~v~ki~~~P 57 (382)
+++.+++|+++|+++.|++...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5788999999999999997765
No 16
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.94 E-value=55 Score=24.16 Aligned_cols=25 Identities=12% Similarity=0.344 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016799 30 WFIPINVVLGTISGSLIGLVIAYIV 54 (382)
Q Consensus 30 w~ipv~~ll~~~ig~~lg~~v~ki~ 54 (382)
+++.+.+++++++|.++||++....
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPS 42 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888999999999887553
No 17
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=35.59 E-value=1.2e+02 Score=30.04 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=43.1
Q ss_pred HHHhhhcccchhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccCCCchHHHHHHHhhcCCC
Q 016799 13 IFSQLGQAITLQKMIEWW-FIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPS 89 (382)
Q Consensus 13 iFskla~~it~~~i~~~w-~ipv~~ll~~~ig~~lg~~v~ki~~~P~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~ 89 (382)
.+--.+.++++++....- =.-+-.+.=+++|.++|+++.|++...--..++. .|==+++++.+++.+++
T Consensus 54 ~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f--------~GlS~LAiiaa~~~~Ng 123 (314)
T PF03812_consen 54 FLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFF--------LGLSALAIIAAMTNSNG 123 (314)
T ss_pred HHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccc--------cchHHHHHHHHHhcCCH
Confidence 344567788877654431 1112133449999999999999998762211211 23348899999987653
No 18
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=33.95 E-value=63 Score=24.32 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=19.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 016799 22 TLQKMIEWWFIPINVVLGTISGSLIGLVIAYIVR 55 (382)
Q Consensus 22 t~~~i~~~w~ipv~~ll~~~ig~~lg~~v~ki~~ 55 (382)
+++|+.++ ++++.++.+.+||+..+-++
T Consensus 2 ~i~DiiQi------i~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 2 NISDIIQI------IILCALIFFPLGYLARRWLP 29 (62)
T ss_pred CHHHHHHH------HHHHHHHHHhHHHHHHHHhH
Confidence 57888888 55566666777777766543
No 19
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=31.64 E-value=1.4e+02 Score=26.23 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=34.3
Q ss_pred HHHHhhhcccchhhhhH---HHH-HHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 016799 12 LIFSQLGQAITLQKMIE---WWF-IPINVVLGTISGSLIGLVIAYIVRPPY 58 (382)
Q Consensus 12 LiFskla~~it~~~i~~---~w~-ipv~~ll~~~ig~~lg~~v~ki~~~P~ 58 (382)
++-..+|..+|.+++++ +|. .-+..+++..++.+.+|+..|.++.|.
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 105 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDP 105 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 35577888887766544 443 444456667889999999999999883
No 20
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.77 E-value=92 Score=24.02 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016799 28 EWWFIPINVVLGTISGSLIGLVIAY 52 (382)
Q Consensus 28 ~~w~ipv~~ll~~~ig~~lg~~v~k 52 (382)
++|.--+.+++..++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455558888899999999987774
No 21
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=29.42 E-value=6.7 Score=42.40 Aligned_cols=95 Identities=19% Similarity=0.376 Sum_probs=65.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCcEEEEEeccCCCchHHHHHHHhhcCCCCCCCChhhhhh
Q 016799 23 LQKMIEWWFIPINVVLGTISGSLIGLVIAYIVRP--PYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPSNPFAEPETCST 100 (382)
Q Consensus 23 ~~~i~~~w~ipv~~ll~~~ig~~lg~~v~ki~~~--P~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~ 100 (382)
.+++-+||+.-+ .+++.++|..++...+- --++ .+++.||+++=...+|+.+|+|.++. .| .-+.-.+
T Consensus 438 YKeVP~WWf~~i-----li~s~~l~~~~~~~~~~~~q~Pw-Wg~~va~~ia~vf~iPigii~AtTNq--~~--GLNiitE 507 (761)
T KOG2262|consen 438 YKEVPDWWFLAI-----LIVSLGLGLAACEGYKTQVQLPW-WGLLVACAIAFVFTIPIGIIQATTNQ--TP--GLNIITE 507 (761)
T ss_pred hccCcHHHHHHH-----HHHHHHHHhhheeeecccccCch-HHHHHHHHHHHHHhccHHHhhhhccC--Cc--cHHHHHH
Confidence 678888998655 34444555555555443 2234 34566778888999999999999653 33 2245566
Q ss_pred hHHHHHHHHHHHhhhheeeeecccccC
Q 016799 101 QMTAYISFGQWVGAIILYTYVFHMLAP 127 (382)
Q Consensus 101 ~G~aY~~~~~~v~~~~~ws~~y~~l~~ 127 (382)
.=+.|+.=..=++++++-+|||.-++.
T Consensus 508 ~i~Gy~~PgrPiAn~~FK~yGyism~Q 534 (761)
T KOG2262|consen 508 YIIGYIYPGRPIANLCFKTYGYISMTQ 534 (761)
T ss_pred HHHHhhcCCchHHHHHHHHhchhhHHH
Confidence 667777777778889999999987764
No 22
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=27.46 E-value=78 Score=31.22 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=60.8
Q ss_pred hhcccchhhhhHHHH-HHHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCcEEEEEeccCCCchHHHHHHHhhcCC----CC
Q 016799 17 LGQAITLQKMIEWWF-IPINVVLGTISGSLIGLVIA-YIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDP----SN 90 (382)
Q Consensus 17 la~~it~~~i~~~w~-ipv~~ll~~~ig~~lg~~v~-ki~~~P~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~----~~ 90 (382)
+|-+++++++.+.+. .-+-.++.......+++.+. |.+|.|+++.-.+ +++ .|+|... -.
T Consensus 69 lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Li-a~G-------------tsICG~SAi~A~a 134 (305)
T PF03601_consen 69 LGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILI-AAG-------------TSICGASAIAATA 134 (305)
T ss_pred HCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-Hhh-------------cccchHHHHHHHc
Confidence 688999999999987 34446667888888888888 9999998765433 222 2333321 01
Q ss_pred C-CCChhhhhhhHHHHHHHHHHHhhhheeeeecccccCC
Q 016799 91 P-FAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLAPP 128 (382)
Q Consensus 91 p-f~~~~~~~~~G~aY~~~~~~v~~~~~ws~~y~~l~~~ 128 (382)
| -...+++...+++-+.++-.++.+ .+.+-++.+..+
T Consensus 135 ~~i~a~~~~~a~ava~V~lfg~vam~-~~P~l~~~l~l~ 172 (305)
T PF03601_consen 135 PVIKAKEEDVAYAVATVFLFGTVAMF-LYPLLGHALGLS 172 (305)
T ss_pred ccccCCCCceeeeehHHHHHHHHHHH-HHHHHHHHhCCC
Confidence 1 223455677777777776665543 344444555543
No 23
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=26.96 E-value=87 Score=23.79 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=33.0
Q ss_pred hcccchhhhhHHH--HHHHHHHHHHHHHHHHHHHHH---HHhCCCCCC
Q 016799 18 GQAITLQKMIEWW--FIPINVVLGTISGSLIGLVIA---YIVRPPYPY 60 (382)
Q Consensus 18 a~~it~~~i~~~w--~ipv~~ll~~~ig~~lg~~v~---ki~~~P~~~ 60 (382)
.++.+.+.++-|| ++|=-++++..+|.+.|-.-. |+.+.|.+.
T Consensus 12 ~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql~~~~~~clP~~~ 59 (65)
T PF12534_consen 12 ENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQLTQDKIVCLPCTS 59 (65)
T ss_pred hhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHhccccceeCCCcc
Confidence 4567889999999 888888888888888776554 666777544
No 24
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=26.77 E-value=1.7e+02 Score=29.11 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHhhhcccchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccCCCchHHHHHHHhhcCCC
Q 016799 11 CLIFSQLGQAITLQKMIEWWFIPINVVLG-TISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPS 89 (382)
Q Consensus 11 ~LiFskla~~it~~~i~~~w~ipv~~ll~-~~ig~~lg~~v~ki~~~P~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~ 89 (382)
++.+--.+.+|++++....--=-...++. +++|.++|+++.|++... |+ .|==|++++.+++.+++
T Consensus 52 ~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~----g~---------~Gls~laiiaa~~~~Ng 118 (312)
T PRK12460 52 GAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE----GI---------FGLSGLAIVAAMSNSNG 118 (312)
T ss_pred HHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc----cc---------cchHHHHHHHHHhcCcH
Q ss_pred -------CCCCChhhhhhhHHH
Q 016799 90 -------NPFAEPETCSTQMTA 104 (382)
Q Consensus 90 -------~pf~~~~~~~~~G~a 104 (382)
.-|||++|..+.++.
T Consensus 119 ~ly~al~~~yG~~~d~gA~~~~ 140 (312)
T PRK12460 119 GLYAALMGEFGDERDVGAISIL 140 (312)
T ss_pred HHHHHHHHHcCCHhhhhHHhhh
No 25
>PRK01844 hypothetical protein; Provisional
Probab=26.17 E-value=1.1e+02 Score=23.62 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016799 29 WWFIPINVVLGTISGSLIGLVIAYI 53 (382)
Q Consensus 29 ~w~ipv~~ll~~~ig~~lg~~v~ki 53 (382)
.|+.-+.+++..++|.+.|+.+.|-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555678899999999888753
No 26
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=23.82 E-value=3.5e+02 Score=27.50 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccCCCchHHHHHHHhhc
Q 016799 12 LIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCR 86 (382)
Q Consensus 12 LiFskla~~it~~~i~~~w~ipv~~ll~~~ig~~lg~~v~ki~~~P~~~~~~vi~~~~fgN~~~LPl~li~sl~~ 86 (382)
+.|.-+|..-+++++.+-..+.+..++...+-.++=+++.|++|.| ...+..++=.|+|--+.+-+.|-++
T Consensus 275 ~ffa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~~kl~k~~----l~~~~vAS~AnIGGpaTA~a~A~a~ 345 (378)
T PF05684_consen 275 LFFAVIGASADISELLDAPSLFLFGFIILAIHLLLMLILGKLFKID----LFELLVASNANIGGPATAPAVAAAK 345 (378)
T ss_pred HHHHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHhhcccCCcchHHHHHHhc
Confidence 4677888999999999955566666677777888888899999998 4444555556666666665555544
No 27
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.91 E-value=1.2e+02 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 016799 36 VVLGTISGSLIGLVIAYIVRPP 57 (382)
Q Consensus 36 ~ll~~~ig~~lg~~v~ki~~~P 57 (382)
+++..++|.++|+++.|+++..
T Consensus 11 a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcchh
Confidence 3477889999999999998744
No 28
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=20.77 E-value=3.1e+02 Score=28.28 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHhhhhhHH
Q 016799 290 TTAAIIFGRLVLVPPAGL 307 (382)
Q Consensus 290 ~iv~i~~~RlillPiigi 307 (382)
.+....+.|++..|+.-+
T Consensus 339 ~l~i~s~~R~iFIPlf~l 356 (437)
T TIGR00939 339 WLPILSFLRVLFIPLFLL 356 (437)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 566778999999999854
No 29
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=20.55 E-value=64 Score=25.12 Aligned_cols=13 Identities=31% Similarity=1.004 Sum_probs=9.4
Q ss_pred CcEEEEehhhHHH
Q 016799 1 MQLVFTLLLPCLI 13 (382)
Q Consensus 1 ~~lv~~vFlP~Li 13 (382)
||.+..+|.|||+
T Consensus 1 ~~~~~Al~~P~lL 13 (74)
T PF09964_consen 1 TKYLLALFFPCLL 13 (74)
T ss_pred CHHHHHHHHHHHH
Confidence 4556678999984
No 30
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=20.21 E-value=2.4e+02 Score=27.88 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=33.9
Q ss_pred HHHHhhhcccchhh---hhHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 016799 12 LIFSQLGQAITLQK---MIEWWFI-PINVVLGTISGSLIGLVIAYIVRPPYP 59 (382)
Q Consensus 12 LiFskla~~it~~~---i~~~w~i-pv~~ll~~~ig~~lg~~v~ki~~~P~~ 59 (382)
++-..+|.++|.|. +++||+. -+..+++..++.+.+|+..|..|.++.
T Consensus 33 ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~ 84 (318)
T PF05145_consen 33 ILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA 84 (318)
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 45677888888775 4455543 333444588899999999999998743
Done!