Query 016799
Match_columns 382
No_of_seqs 111 out of 256
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 96.8 0.0028 9.5E-08 61.7 7.9 135 224-378 20-156 (332)
2 3zux_A Transporter, ASBTNM; tr 57.0 3.9 0.00013 39.2 1.7 79 34-120 232-310 (332)
3 2knc_A Integrin alpha-IIB; tra 10.3 4.4E+02 0.015 18.2 5.2 31 281-311 5-35 (54)
4 2l8s_A Integrin alpha-1; trans 7.1 5.3E+02 0.018 17.8 3.8 28 284-311 5-32 (54)
5 2k1a_A Integrin alpha-IIB; sin 6.2 6.2E+02 0.021 16.5 3.7 35 283-321 5-39 (42)
6 1q90_M Cytochrome B6F complex 5.5 6.7E+02 0.023 16.1 4.4 23 33-55 10-32 (39)
7 1q90_G Cytochrome B6F complex 5.5 2E+02 0.0068 18.4 0.8 10 229-238 6-15 (37)
8 1vf5_F Protein PET M; photosyn 5.5 6.4E+02 0.022 15.9 4.1 23 33-55 9-31 (35)
9 2nwl_A GLTPH, glutamate sympor 5.4 7.3E+02 0.025 24.1 5.4 51 9-59 58-112 (422)
10 1tm9_A GI3844938, hypothetical 4.1 5.8E+02 0.02 20.1 2.8 22 303-324 94-115 (137)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.77 E-value=0.0028 Score=61.67 Aligned_cols=135 Identities=9% Similarity=0.009 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhcccccchhhccccCCcchhHHHHHHHhcCchhHHHHHhhccccCCCCCCCCC-CchhhHHHHHHHHHhh
Q 016799 224 PIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKL-GFRTTAAIIFGRLVLV 302 (382)
Q Consensus 224 p~ia~ilg~iig~iP~Lk~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~~s~~-~~~~iv~i~~~Rlill 302 (382)
-++..+++.++|..=|=.. .++...+ ..++.++++..|.++....-.... .+|......+.+++++
T Consensus 20 ~~l~i~~~~~lg~~~P~~~---------~~~~~~i----~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~ 86 (332)
T 3zux_A 20 FSLWAALFAAAAFFAPDTF---------KWAGPYI----PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIM 86 (332)
T ss_dssp HHHHHHHHHHHHHHCGGGT---------GGGGGGH----HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhh---------hhhHHHH----HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3677777777776533211 1122222 247889999999999741111111 4677888889999999
Q ss_pred hhhHHHHHHHHHHhCCccCCChHHHHHHHhcccchhHHHHHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016799 303 PPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYL 378 (382)
Q Consensus 303 Piigi~iv~~a~k~g~i~~~Dpl~~FVlll~~~~PpA~~l~~itql~~~~-~e~s~ilfw~Y~~~~vslt~~~~~~l 378 (382)
|+++.++.+.. + .||.+...+++..+.|++.+...+|++.|-. .-+.+.-..+-.++.+++|+|..+++
T Consensus 87 Pll~~~l~~~~------~-l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 87 PATAWCLSKLL------N-LPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHT------T-CCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------C-CChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999887642 3 4999999999999999999998899998755 55555555899999999999998875
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=56.97 E-value=3.9 Score=39.23 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccCCCchHHHHHHHhhcCCCCCCCChhhhhhhHHHHHHHHHHHh
Q 016799 34 INVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVG 113 (382)
Q Consensus 34 v~~ll~~~ig~~lg~~v~ki~~~P~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~~G~aY~~~~~~v~ 113 (382)
+..++...+|+.+|+.+.|.+|.+++.+.-+.-.|+..|+ .+++.-+... |+++....--...|-.+-...+
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs---~lai~lA~~~-----F~~~p~~alp~~iy~~~q~i~~ 303 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS---GLAAALAAAH-----FAAAPVVAVPGALFSVWHNISG 303 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH---HHHHHHHHHH-----STTCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH---HHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHH
Confidence 3466778999999999999999999887777666788887 3444444432 3222233334455665555555
Q ss_pred hhheeee
Q 016799 114 AIILYTY 120 (382)
Q Consensus 114 ~~~~ws~ 120 (382)
.++.+-|
T Consensus 304 ~~la~~~ 310 (332)
T 3zux_A 304 SLLATYW 310 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.34 E-value=4.4e+02 Score=18.19 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=22.1
Q ss_pred CCCCCCCchhhHHHHHHHHHhhhhhHHHHHH
Q 016799 281 PGSAKLGFRTTAAIIFGRLVLVPPAGLGIVT 311 (382)
Q Consensus 281 ~~~s~~~~~~iv~i~~~RlillPiigi~iv~ 311 (382)
.+...++++.++..+++=++++.++-....+
T Consensus 5 ~~~~~vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789888888888888777766555544
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.15 E-value=5.3e+02 Score=17.85 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=19.8
Q ss_pred CCCCchhhHHHHHHHHHhhhhhHHHHHH
Q 016799 284 AKLGFRTTAAIIFGRLVLVPPAGLGIVT 311 (382)
Q Consensus 284 s~~~~~~iv~i~~~RlillPiigi~iv~ 311 (382)
..++++.|+..+++=++++.++-....+
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888877777666554444
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=6.16 E-value=6.2e+02 Score=16.46 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=23.3
Q ss_pred CCCCCchhhHHHHHHHHHhhhhhHHHHHHHHHHhCCccC
Q 016799 283 SAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPA 321 (382)
Q Consensus 283 ~s~~~~~~iv~i~~~RlillPiigi~iv~~a~k~g~i~~ 321 (382)
...++++.++..+++=++++.++ ++..+|.|+...
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~li----~~~LwK~GFFkR 39 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLTIL----VLAMWKVGFFKR 39 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHH----HHHHHHTTTTCC
T ss_pred cCCcchHHHHHHHHHHHHHHHHH----HHHHHHcCcccC
Confidence 45678888887777777665543 445667787643
No 6
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=5.47 E-value=6.7e+02 Score=16.14 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 016799 33 PINVVLGTISGSLIGLVIAYIVR 55 (382)
Q Consensus 33 pv~~ll~~~ig~~lg~~v~ki~~ 55 (382)
.......+.+|..+|+++-|+-+
T Consensus 10 A~i~~~L~LvGla~Gf~LLkiqg 32 (39)
T 1q90_M 10 ALTMVGMTLVGLAIGFVLLRVES 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Confidence 34455668889999999988753
No 7
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=5.46 E-value=2e+02 Score=18.39 Aligned_cols=10 Identities=30% Similarity=0.673 Sum_probs=6.6
Q ss_pred HHHHHhcccc
Q 016799 229 ILAMGIGAVP 238 (382)
Q Consensus 229 ilg~iig~iP 238 (382)
+.|+++|+||
T Consensus 6 L~GIVlGlip 15 (37)
T 1q90_G 6 LCGIVLGLVP 15 (37)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHhhHH
Confidence 4566667766
No 8
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=5.46 E-value=6.4e+02 Score=15.85 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 016799 33 PINVVLGTISGSLIGLVIAYIVR 55 (382)
Q Consensus 33 pv~~ll~~~ig~~lg~~v~ki~~ 55 (382)
.+.....+.+|..+|+++-|+-+
T Consensus 9 A~i~~~LvLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 9 ALLSFGLIFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhheeec
Confidence 33455668889999999988754
No 9
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=5.40 E-value=7.3e+02 Score=24.08 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=38.2
Q ss_pred hhHHHHHhhhcccc-h--hhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 016799 9 LPCLIFSQLGQAIT-L--QKMIEW-WFIPINVVLGTISGSLIGLVIAYIVRPPYP 59 (382)
Q Consensus 9 lP~LiFskla~~it-~--~~i~~~-w~ipv~~ll~~~ig~~lg~~v~ki~~~P~~ 59 (382)
.|=|+|..+...+. . +++.++ +-.-+++++++.+...+|.++..++++-..
T Consensus 58 v~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g 112 (422)
T 2nwl_A 58 VMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 112 (422)
T ss_dssp HHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45578888888774 3 555554 346667888899999999999999987643
No 10
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=4.10 E-value=5.8e+02 Score=20.07 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHhCCccCCCh
Q 016799 303 PPAGLGIVTLADKLGFIPAGDK 324 (382)
Q Consensus 303 Piigi~iv~~a~k~g~i~~~Dp 324 (382)
|+|..-+.+..+|+|++.++++
T Consensus 94 ~aiifci~yflyhf~fl~d~nk 115 (137)
T 1tm9_A 94 PAIIFCVIYFLYHFGFLKDNNK 115 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCCCCC
T ss_pred ceehhhHHHHHHHhcccccccH
Confidence 3444456677889999877655
Done!