Query 016799
Match_columns 382
No_of_seqs 111 out of 256
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 03:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016799.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016799hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 14.1 19 0.0014 20.9 0.1 29 218-246 5-33 (34)
2 d1q90g_ f.23.26.1 (G:) PetG su 5.3 99 0.0072 17.2 0.8 11 228-238 5-15 (30)
3 d1tm9a_ a.225.1.1 (A:) Hypothe 4.1 2.7E+02 0.02 20.1 2.8 22 303-324 94-115 (137)
4 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.8 6.8E+02 0.049 21.4 6.2 82 225-311 6-90 (405)
5 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.4 8E+02 0.058 20.8 6.3 51 10-60 48-102 (405)
6 d2q66a1 a.160.1.1 (A:202-351) 3.3 3.8E+02 0.028 20.3 3.2 32 333-364 30-63 (150)
7 d1q79a1 a.160.1.1 (A:215-364) 3.0 4.3E+02 0.031 20.0 3.2 32 333-364 30-63 (150)
8 d1zj6a1 c.37.1.8 (A:2-178) ADP 2.6 2.2E+02 0.016 20.7 1.0 22 64-87 17-38 (177)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 2.6 2.3E+02 0.016 15.4 0.7 19 102-120 3-21 (30)
10 d1jb0m_ f.23.19.1 (M:) Subunit 2.4 2.4E+02 0.017 15.6 0.6 11 229-239 9-19 (31)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.13 E-value=19 Score=20.86 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=23.7
Q ss_pred ccccCchHHHHHHHHHhcccccchhhccc
Q 016799 218 KQILQPPIIASILAMGIGAVPFLKKLIFT 246 (382)
Q Consensus 218 ~~~~~Pp~ia~ilg~iig~iP~Lk~lf~~ 246 (382)
++|||=-+.+.+-|...|..-|+-+-|+.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 56666679999999999998888777764
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.34 E-value=99 Score=17.18 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=7.5
Q ss_pred HHHHHHhcccc
Q 016799 228 SILAMGIGAVP 238 (382)
Q Consensus 228 ~ilg~iig~iP 238 (382)
.+.|++.|+||
T Consensus 5 ll~GivlGlip 15 (30)
T d1q90g_ 5 LLCGIVLGLVP 15 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhHHHhhHH
Confidence 34577777777
No 3
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=4.10 E-value=2.7e+02 Score=20.07 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHhCCccCCCh
Q 016799 303 PPAGLGIVTLADKLGFIPAGDK 324 (382)
Q Consensus 303 Piigi~iv~~a~k~g~i~~~Dp 324 (382)
|+|..-+.+..+|+|++.++++
T Consensus 94 ~aiifci~yflyhf~fl~d~nk 115 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKDNNK 115 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCCCCC
T ss_pred ceehhhHHHHHHHhcccccccH
Confidence 3444456677889999877655
No 4
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.84 E-value=6.8e+02 Score=21.38 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcccccchhhcccc--CCcchhHHH-HHHHhcCchhHHHHHhhccccCCCCCCCCCCchhhHHHHHHHHHh
Q 016799 225 IIASILAMGIGAVPFLKKLIFTD--DAPLFFFTD-SCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVL 301 (382)
Q Consensus 225 ~ia~ilg~iig~iP~Lk~lf~~~--~~pL~~i~d-s~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~Rlil 301 (382)
.+|+++|+++|.+= +.....+ ..-++.+.| -++.+--..+|++..-+=...++ .+.++ .+.+..-++.-+++
T Consensus 6 li~lv~Gi~~G~~~--~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~-L~~~~--~gkl~~~ti~~~l~ 80 (405)
T d2nwwa1 6 LIGLILGAIVGLIL--GHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAAS-ISPAR--LGRVGVKIVVYYLL 80 (405)
T ss_dssp HHHHHHHHHHHHHH--HTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCS-CTTTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchh--cchHHHHHHHHHHH
Confidence 56777777777641 1110000 011233322 23444456788887766555555 33232 34455555555555
Q ss_pred hhhhHHHHHH
Q 016799 302 VPPAGLGIVT 311 (382)
Q Consensus 302 lPiigi~iv~ 311 (382)
.-++.+.+..
T Consensus 81 tt~iA~~igl 90 (405)
T d2nwwa1 81 TSAFAVTLGI 90 (405)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 5
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.41 E-value=8e+02 Score=20.84 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=35.7
Q ss_pred hHHHHHhhhccc-ch--hhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 016799 10 PCLIFSQLGQAI-TL--QKMIEWW-FIPINVVLGTISGSLIGLVIAYIVRPPYPY 60 (382)
Q Consensus 10 P~LiFskla~~i-t~--~~i~~~w-~ipv~~ll~~~ig~~lg~~v~ki~~~P~~~ 60 (382)
+=|+|..+...+ ++ +++.++. -.-.++++++.++..+|+++...+++....
T Consensus 48 ~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~~ 102 (405)
T d2nwwa1 48 MPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGI 102 (405)
T ss_dssp HHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCC
T ss_pred HHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 446777776666 22 3444443 355667788999999999999999987543
No 6
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.27 E-value=3.8e+02 Score=20.34 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=21.3
Q ss_pred cccchhHHHHHHhhhhcCch--HHHHHHHHHHHH
Q 016799 333 QHTMPTSVLSGAVSSLRGCG--REAAAVLFWVHI 364 (382)
Q Consensus 333 ~~~~PpA~~l~~itql~~~~--~e~s~ilfw~Y~ 364 (382)
..+.==||..+-+||++... ..+..-||-.|.
T Consensus 30 lGGI~waILvArvCql~p~a~~~~ll~~FF~~ys 63 (150)
T d2q66a1 30 PGGVAWAMLVARICQLYPNACSAVILNRFFIILS 63 (150)
T ss_dssp CCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 34445577788889999744 666666666654
No 7
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.96 E-value=4.3e+02 Score=20.01 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=21.1
Q ss_pred cccchhHHHHHHhhhhcCch--HHHHHHHHHHHH
Q 016799 333 QHTMPTSVLSGAVSSLRGCG--REAAAVLFWVHI 364 (382)
Q Consensus 333 ~~~~PpA~~l~~itql~~~~--~e~s~ilfw~Y~ 364 (382)
..+.==||..+-+||++... ..+..-||-.|.
T Consensus 30 lGGI~waILvArvCql~Pna~~~~ll~~FF~~ys 63 (150)
T d1q79a1 30 LGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFS 63 (150)
T ss_dssp BCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 34444577778889999754 666666665554
No 8
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}
Probab=2.62 E-value=2.2e+02 Score=20.74 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=16.4
Q ss_pred EEEEEeccCCCchHHHHHHHhhcC
Q 016799 64 TIIHIGIGNIGNVPLVLIAALCRD 87 (382)
Q Consensus 64 vi~~~~fgN~~~LPl~li~sl~~~ 87 (382)
=+..++.+|.|- .+++..+...
T Consensus 17 kI~vvG~~~~GK--SsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGK--TTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSH--HHHHHHHHTT
T ss_pred EEEEECCCCCCH--HHHHHHHhcC
Confidence 377788999986 4777788764
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.62 E-value=2.3e+02 Score=15.39 Aligned_cols=19 Identities=11% Similarity=0.245 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhheeee
Q 016799 102 MTAYISFGQWVGAIILYTY 120 (382)
Q Consensus 102 G~aY~~~~~~v~~~~~ws~ 120 (382)
.++|+.+|.-+-..+++..
T Consensus 3 ~i~yv~ifac~i~lfffai 21 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHH
Confidence 4689888877666665544
No 10
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=2.44 E-value=2.4e+02 Score=15.60 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=6.3
Q ss_pred HHHHHhccccc
Q 016799 229 ILAMGIGAVPF 239 (382)
Q Consensus 229 ilg~iig~iP~ 239 (382)
.++++|+++|-
T Consensus 9 ~valvial~pg 19 (31)
T d1jb0m_ 9 YVALVIALLPA 19 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556666664
Done!