BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016800
(382 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/341 (88%), Positives = 321/341 (94%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET+NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSGQR GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFF+CNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SRVLHIC EEGLNLDAEALSTLS +SQGDLRRAITYLQGAARL+GS+I+SKDLISVSGVI
Sbjct: 181 SRVLHICREEGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLISVSGVI 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P E V L+A CRSGDFD+ANKEVNNIIAEGYP S +L QL +VVVE +DISDEQ+A+IC
Sbjct: 241 PQEAVGALYAACRSGDFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQKAQIC 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K L DKCLVDGADEYLQLLDVASN +RA+CNMP+EF Y+
Sbjct: 301 KSLGAADKCLVDGADEYLQLLDVASNTMRALCNMPQEFPYE 341
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 305/341 (89%), Positives = 321/341 (94%), Gaps = 1/341 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSGV+
Sbjct: 181 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P VV+ LFA C+SGDFD ANKEVNN+IAEGYP S +L QLFDVVVE DISDEQ+ARIC
Sbjct: 241 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K LAE DKCLVDGADEYLQLLDVASN +RA+CNMPEEF ++
Sbjct: 300 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 340
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust.
Identities = 304/341 (89%), Positives = 320/341 (93%), Gaps = 1/341 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSGV+
Sbjct: 181 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P VV+ LFA C+SGDFD ANKEVNN+IAEGYP S +L QLFDVVVE DISDEQ+ARIC
Sbjct: 241 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K LAE DKCLVDGADEYLQLLDVASN +RA+CNMPEEF ++
Sbjct: 300 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 340
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/341 (86%), Positives = 321/341 (94%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQ WVEKYRPKQ+KDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQQWVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSGQR+G YPCPPYKIII
Sbjct: 61 AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL EE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL LD EALSTLSS+SQGDLRRAITYLQGAARLFGSSI+SKDLISVSG I
Sbjct: 181 NRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISVSGAI 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P EV E ++A C++GDFDLANKEVN++IAEGYP S +L+QLF+VVVE +DISDEQ+ARIC
Sbjct: 241 PREVTEAIYAACKNGDFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQKARIC 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K LA DKCLVDGADEYLQLLDV SN +R++CNMP+EF YD
Sbjct: 301 KSLATADKCLVDGADEYLQLLDVVSNTMRSLCNMPQEFSYD 341
>gi|359492415|ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
Length = 334
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 298/341 (87%), Positives = 314/341 (92%), Gaps = 8/341 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFG VLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 113
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 173
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSGV+
Sbjct: 174 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 233
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P VV+ LFA C+SGDFD ANKEVNN+IAEGYP S +L QLFDVVVE DISDEQ+ARIC
Sbjct: 234 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 292
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K LAE DKCLVDGADEYLQLLDVASN +RA+CNMPEEF ++
Sbjct: 293 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 333
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 285/338 (84%), Positives = 311/338 (92%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QS+QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ + + GYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL+EE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+++IC EEG+ LDAE LSTLS+ISQGDLRRAITYLQ AARLFGSSI+SKDLISVSG++
Sbjct: 181 SRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P EVVE L CRSG+FDLANKEVNN IAEGYP S +L+QLF+ +VE DISDEQ+ARI
Sbjct: 241 PAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARIS 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378
K L E DKCLVDGADEYLQLLDV SN I+A+CNMPE F
Sbjct: 301 KKLGEADKCLVDGADEYLQLLDVVSNTIQALCNMPEGF 338
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 285/341 (83%), Positives = 312/341 (91%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QSSQPWVEKYRPKQVKDVA+Q+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIVQSSQPWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ ++GGYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+L+ICNEEGL+LDAE LSTLSSISQGDLRRAITYLQ +ARLFGS I+SKDLISVSGV+
Sbjct: 181 SRILYICNEEGLHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSHISSKDLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P VVE + C+SG+FDLANKEVNN IAEGYPAS LL+QLFD +VE + SD+Q+ARIC
Sbjct: 241 PENVVEAILKACKSGNFDLANKEVNNFIAEGYPASQLLTQLFDAIVEEKGTSDKQKARIC 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K L E DKCLVDGADEYLQLLDV SN +A C+MPE Y+
Sbjct: 301 KKLGEADKCLVDGADEYLQLLDVISNTTKAFCDMPEGLSYE 341
>gi|225459627|ref|XP_002285875.1| PREDICTED: replication factor C subunit 4 isoform 2 [Vitis
vinifera]
Length = 329
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/341 (86%), Positives = 310/341 (90%), Gaps = 13/341 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 168
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSGV+
Sbjct: 169 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 228
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P VV+ LFA C+SGDFD ANKEVNN+IAEGYP S +L QLFDVVVE DISDEQ+ARIC
Sbjct: 229 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 287
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K LAE DKCLVDGADEYLQLLDVASN +RA+CNMPEEF ++
Sbjct: 288 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 328
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 285/342 (83%), Positives = 312/342 (91%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQS+QPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSTQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ QR+ GYPCPP+KII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+L+I EEGL LDAEALSTLSSIS GDLRRAITYLQ AARLFGSSI+S++LISVSGV+
Sbjct: 181 SRILYISQEEGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VVE L C+SG+FDLANKEVNN IAEGYPAS +L+QLF+ +VE D+SDEQ+ARI
Sbjct: 241 PAKVVEELLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARIS 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYDC 382
K L E DKCLVDGADEYLQLLDV SN ++A NMPE F Y C
Sbjct: 301 KKLGEADKCLVDGADEYLQLLDVVSNTMKAFSNMPETFAYKC 342
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 286/339 (84%), Positives = 313/339 (92%), Gaps = 1/339 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P EVV LF C+SGDFD+ANKEV+NI+AEGYPAS +++QLFD+V E + DI+D Q+A+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378
CKCLAE DK LVDGADEYLQLLDVAS+ I A+ M ++F
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEMAQDF 339
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 286/339 (84%), Positives = 311/339 (91%), Gaps = 1/339 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+L EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL+ VSGV+
Sbjct: 181 NRILHICNEEGLSLGGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLDVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P EVV LF C+SGDFD+ANKEV+NI+AEGYPAS +++QLFD+V E + DI+D Q+A+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378
CKCLAE DK LVDGADEYLQLLDVASN I A+ M ++F
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASNTILALSEMAQDF 339
>gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 336
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 281/331 (84%), Positives = 308/331 (93%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAV SGQR+GGYPCPP+KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+LHI NEEGL+LD EALSTLSSISQGDLRRAITYLQ AARLFGSSI+SKDL++VSG+I
Sbjct: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P EVV+ LF C+SG+FD ANK+VNN++AEGYP + +LSQ+F+VV+E D+ DEQ+ARIC
Sbjct: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
K LAE DKCLVDGADEYLQLLDV S ++ +
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVL 331
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust.
Identities = 283/342 (82%), Positives = 311/342 (90%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ Q + GYPCPP+KII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+L+I EEGL LDAEALSTLS IS GDLRRAITYLQ AARLFGSSI+S++LISVSGV+
Sbjct: 181 SRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VVE L C+SG+FDLANKEVNN IAEGYPAS +L+QLF+ +VE D+SDEQ+ARI
Sbjct: 241 PAKVVEALLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARIS 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYDC 382
K L E DKCLVDGADEYLQLLDV SN I+A ++PE F Y+C
Sbjct: 301 KKLGEADKCLVDGADEYLQLLDVVSNTIKAFNSLPEAFAYEC 342
>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
Length = 339
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 281/340 (82%), Positives = 310/340 (91%), Gaps = 1/340 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SSQPWVEKYRP+QVKDVAHQEEVVRVLT TL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+GGYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSA-RKGGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+LDA+AL+TLS+IS GDLRRAITYLQ AARLFGSSI+S DLISVSG I
Sbjct: 180 NRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAI 239
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VV+ L A C+SG+FD+ANKEVNNIIA+GYP S L+SQ DV+V +DI DEQ+ARIC
Sbjct: 240 PEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARIC 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQY 380
K L E DKCLVDGADEYLQLLDVAS IRA+ +MP+ +
Sbjct: 300 KKLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF 339
>gi|334182754|ref|NP_001185060.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 332
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 279/339 (82%), Positives = 306/339 (90%), Gaps = 8/339 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFG VLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 113
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 173
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSGV+
Sbjct: 174 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 233
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P EVV LF C+SGDFD+ANKEV+NI+AEGYPAS +++QLFD+V E + DI+D Q+A+I
Sbjct: 234 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 293
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378
CKCLAE DK LVDGADEYLQLLDVAS+ I A+ M ++F
Sbjct: 294 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEMAQDF 332
>gi|357160682|ref|XP_003578842.1| PREDICTED: replication factor C subunit 4-like [Brachypodium
distachyon]
Length = 339
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/336 (81%), Positives = 308/336 (91%), Gaps = 1/336 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SSQPWVEKYRP+QVKDVAHQEEVVRVLTNTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLIPSSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASD+RGINVVRTKIK FAAVAVG+ R+GGYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDERGINVVRTKIKDFAAVAVGTA-RKGGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE+VM+
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMT 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHIC+EEGL LDA+ALSTLS+I QGDLRRAITYLQ AARLFGSSI+S DLISVSG I
Sbjct: 180 NRILHICHEEGLTLDAQALSTLSAICQGDLRRAITYLQSAARLFGSSISSTDLISVSGAI 239
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P ++V+ L C+SG+FD+ANKEV++IIA+GYP S LLSQ DV+V +DI DEQ+ARIC
Sbjct: 240 PEDIVKSLLGACKSGEFDVANKEVSSIIADGYPVSQLLSQFLDVIVNADDIPDEQKARIC 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPE 376
K L E DKCLVDGADEYLQLLD+AS IRA+ N+P+
Sbjct: 300 KKLGEADKCLVDGADEYLQLLDMASETIRALFNIPQ 335
>gi|356515927|ref|XP_003526648.1| PREDICTED: replication factor C subunit 4-like isoform 3 [Glycine
max]
Length = 335
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 276/342 (80%), Positives = 304/342 (88%), Gaps = 7/342 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFG VLELNASDDRGINVVRTKIK FAAVAVG+ Q + GYPCPP+KII+
Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIV 113
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 173
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+L+I EEGL LDAEALSTLS IS GDLRRAITYLQ AARLFGSSI+S++LISVSGV+
Sbjct: 174 SRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVV 233
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VVE L C+SG+FDLANKEVNN IAEGYPAS +L+QLF+ +VE D+SDEQ+ARI
Sbjct: 234 PAKVVEALLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARIS 293
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYDC 382
K L E DKCLVDGADEYLQLLDV SN I+A ++PE F Y+C
Sbjct: 294 KKLGEADKCLVDGADEYLQLLDVVSNTIKAFNSLPEAFAYEC 335
>gi|356509381|ref|XP_003523428.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/342 (80%), Positives = 301/342 (88%), Gaps = 12/342 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQS+QPWVEKYRPKQVKDVAHQ+EV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSTQPWVEKYRPKQVKDVAHQDEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ QR+ GYPCPP+KII+
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIV 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 168
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+L+I EEGL LDAEALSTLSSIS GDLRRAITYLQ AARLFGSSI+S++LISVSGV+
Sbjct: 169 SRILYISQEEGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVV 228
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VVE L C+SG+FDLANKEVNN IAEGYPAS +L+QLF+ +VE D+SDEQ+ARI
Sbjct: 229 PAKVVEELLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARIS 288
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYDC 382
K L E DKCLVDGADEYLQLLDV SN ++A NMPE F Y C
Sbjct: 289 KKLGEADKCLVDGADEYLQLLDVVSNTMKAFSNMPETFAYKC 330
>gi|30687479|ref|NP_849695.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192019|gb|AEE30140.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 327
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/339 (81%), Positives = 301/339 (88%), Gaps = 13/339 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 168
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSGV+
Sbjct: 169 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 228
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P EVV LF C+SGDFD+ANKEV+NI+AEGYPAS +++QLFD+V E + DI+D Q+A+I
Sbjct: 229 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 288
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378
CKCLAE DK LVDGADEYLQLLDVAS+ I A+ M ++F
Sbjct: 289 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEMAQDF 327
>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
Length = 339
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 279/340 (82%), Positives = 311/340 (91%), Gaps = 1/340 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVLTNTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR++HICNEEGLNLDA+ALSTLS+ISQGDLRRAITYLQ AARLFGSS++S DLISVSGVI
Sbjct: 180 SRIMHICNEEGLNLDAQALSTLSAISQGDLRRAITYLQSAARLFGSSLSSSDLISVSGVI 239
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VV+ L A C+SG+FD+ANKEV+NIIA+GYP S L++Q DV+V +DI D+Q+ARIC
Sbjct: 240 PEDVVKSLLAACKSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVSADDIQDDQKARIC 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQY 380
K L E DKCLVDGADEYLQLLDVAS IRA+ NMP+ +
Sbjct: 300 KKLGETDKCLVDGADEYLQLLDVASETIRALFNMPQTLVF 339
>gi|356515925|ref|XP_003526647.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/342 (79%), Positives = 300/342 (87%), Gaps = 12/342 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQDEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ Q + GYPCPP+KII+
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIV 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 168
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+L+I EEGL LDAEALSTLS IS GDLRRAITYLQ AARLFGSSI+S++LISVSGV+
Sbjct: 169 SRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVV 228
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VVE L C+SG+FDLANKEVNN IAEGYPAS +L+QLF+ +VE D+SDEQ+ARI
Sbjct: 229 PAKVVEALLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARIS 288
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYDC 382
K L E DKCLVDGADEYLQLLDV SN I+A ++PE F Y+C
Sbjct: 289 KKLGEADKCLVDGADEYLQLLDVVSNTIKAFNSLPEAFAYEC 330
>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
Length = 339
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 279/340 (82%), Positives = 310/340 (91%), Gaps = 1/340 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVLTNTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL SRCAKFRFKPLSEEVMS
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLVSRCAKFRFKPLSEEVMS 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R++HICNEEGLNLDA+ALSTLS+ISQGDLRRAITYLQ AARLFGSSI+S DLISVSGVI
Sbjct: 180 NRIMHICNEEGLNLDAQALSTLSAISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVI 239
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VV+ L A CRSG+FD+ANKEV+NIIA+GYP S L++Q DV+V +DI D+Q+ARIC
Sbjct: 240 PEDVVKSLLAACRSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVGADDIPDDQKARIC 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQY 380
K L E DKCLVDGADEYLQLLDVAS IRA+ NMP+ +
Sbjct: 300 KKLGETDKCLVDGADEYLQLLDVASETIRALFNMPQTLVF 339
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 271/326 (83%), Positives = 298/326 (91%), Gaps = 5/326 (1%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P EVV LF C+SGDFD+ANKEV+NI+AEGYPAS +++QLFD+V E + DI+D Q+A+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300
Query: 340 CKCLAEVDK---C-LVDGADEYLQLL 361
CKCLAE DK C L +G+ +Q+L
Sbjct: 301 CKCLAETDKYNLCPLRNGSRLLMQIL 326
>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/340 (81%), Positives = 307/340 (90%), Gaps = 1/340 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVL NTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRT ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 120 LDEADSMTEDAQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR++HICNEEGLNL+A+A+STLS ISQGDLRRAITYLQ AARLFGSSI+S DLISVSGVI
Sbjct: 180 SRIMHICNEEGLNLNAQAMSTLSVISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVI 239
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VV+ L A CRSG+FD+ANKEV++IIA+GYP S L++Q DV+V +DI D+Q+ARIC
Sbjct: 240 PEDVVKSLLAACRSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKARIC 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQY 380
K L E DKCLVDGADEYLQLLDVAS IRA+ NMP +
Sbjct: 300 KKLGETDKCLVDGADEYLQLLDVASETIRALFNMPRTLVF 339
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/339 (80%), Positives = 296/339 (87%), Gaps = 21/339 (6%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ V+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQ--------------------VV 220
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P EVV LF C+SGDFD+ANKEV+NI+AEGYPAS +++QLFD+V E + DI+D Q+A+I
Sbjct: 221 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 280
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378
CKCLAE DK LVDGADEYLQLLDVAS+ I A+ M ++F
Sbjct: 281 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEMAQDF 319
>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
gi|194706416|gb|ACF87292.1| unknown [Zea mays]
gi|413916289|gb|AFW56221.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/340 (80%), Positives = 307/340 (90%), Gaps = 1/340 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVL NTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRT ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 120 LDEADSMTEDAQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR++HICNEEGLNL+A+A+STLS ISQGDLRRAITYLQ AARLFGSSI+S DLISVSGVI
Sbjct: 180 SRIMHICNEEGLNLNAQAMSTLSVISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVI 239
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VV+ L A CRSG+FD+ANKEV++IIA+GYP S L++Q DV+V +DI D+Q+ARIC
Sbjct: 240 PEDVVKSLLAACRSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKARIC 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQY 380
K L E DKCLVDGADEYLQLLDVAS IR++ NMP +
Sbjct: 300 KKLGETDKCLVDGADEYLQLLDVASETIRSLFNMPRTLVF 339
>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
Length = 339
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/340 (77%), Positives = 302/340 (88%), Gaps = 1/340 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+ SSQ WVEKYRPKQVKDVAHQEEVVR LTNTLET N PH+LFYGPPGTGKTTTAL
Sbjct: 1 MAPIHSSSQQWVEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPE YKSRVLELNASDDRGINVVRTKIK FAAVAVGSG GY CPP+KIII
Sbjct: 61 AIAHQLFGPE-YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRF FICNY+SRIIEPLASRCAKFRFKPL E++M+
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMT 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+LHIC EEG++LD++AL+ LSSIS+GDLRRAITYLQ AARL+GSSI+S +LISVSG++
Sbjct: 180 GRILHICKEEGVHLDSDALTMLSSISEGDLRRAITYLQSAARLYGSSISSNNLISVSGIV 239
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P EVV+ L+ C++G FDLA KEV++IIAEG+PAS + SQL+D+VV+ DISDE +ARI
Sbjct: 240 PKEVVQSLYQACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQATDISDETKARIS 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQY 380
+ LAE DKCL+DGADEYLQLLDVASN +R++CNM +E Y
Sbjct: 300 QRLAEADKCLIDGADEYLQLLDVASNAMRSLCNMTQECCY 339
>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 256/340 (75%), Positives = 296/340 (87%), Gaps = 2/340 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPV+QS+Q WVEKYRP++VKDVAHQEEVVR LTNTLET N PH+LFYGPPGTGKTTTAL
Sbjct: 1 MAPVMQSTQQWVEKYRPRKVKDVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AI HQLFGPELYK+RVLELNASDDRGINVVRTKIK FA VAVG+G GYPCPP+K++I
Sbjct: 61 AICHQLFGPELYKTRVLELNASDDRGINVVRTKIKDFAGVAVGAGV--SGYPCPPFKVLI 118
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTME YSKVTRF FICNY+SRIIEPLASRCAKFRFKPL E VM
Sbjct: 119 LDEADSMTEDAQNALRRTMENYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLLENVMQ 178
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+ +IC EEGL LD EALSTLS +S+GDLRRAIT LQ A RL+GS+I+SK++ISVSG++
Sbjct: 179 NRIQYICQEEGLKLDQEALSTLSRVSEGDLRRAITCLQCAVRLYGSNISSKEIISVSGIV 238
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P V+EGL C+SG FDLA++EV +IIAEG+P S +LSQLFD VV++ +ISD Q+ARI
Sbjct: 239 PDSVLEGLLKACQSGQFDLAHQEVRDIIAEGHPVSQILSQLFDFVVQSPNISDIQKARIT 298
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQY 380
+ LAE DKCL+DGADEYLQL+DVASN +RA+CN +E Y
Sbjct: 299 ERLAETDKCLIDGADEYLQLMDVASNTMRALCNQTQECTY 338
>gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
Length = 345
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/350 (71%), Positives = 288/350 (82%), Gaps = 16/350 (4%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP SQ WVEKYRPKQVKDVAHQ+EVVR L N LET N PH+LFYGPPGTGKT+TAL
Sbjct: 1 MAP----SQQWVEKYRPKQVKDVAHQDEVVRTLANALETGNLPHLLFYGPPGTGKTSTAL 56
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+ +LFGP+LYK+RVLELNASDDRGINVVRTKIK FAAVAVG G YPCPP+K+II
Sbjct: 57 AVTRELFGPQLYKTRVLELNASDDRGINVVRTKIKDFAAVAVGRGV--SDYPCPPFKVII 114
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR----------IIEPLASRCAKFR 210
LDEADSMTEDAQNALRRTMETYSKVTRF FICNYISR IIEPLASRCAKFR
Sbjct: 115 LDEADSMTEDAQNALRRTMETYSKVTRFCFICNYISRLCKTIILCFRIIEPLASRCAKFR 174
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
FK L+++VM R+LHIC+EEG+ + +EAL+TLS +S+GDLRRAITYLQ A RL+GSSITS
Sbjct: 175 FKSLNQDVMHGRILHICSEEGVQMGSEALATLSRVSEGDLRRAITYLQSATRLYGSSITS 234
Query: 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETED 330
KD++SVSGVIP V++ L C SG FD A KEV NIIAEGYP S + SQ++D VVE+ +
Sbjct: 235 KDILSVSGVIPDNVIQSLLQACTSGVFDQAQKEVTNIIAEGYPVSQIFSQVYDHVVESPE 294
Query: 331 ISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQY 380
ISDEQ+A+IC+ LAE DKCL+DGADE LQL+DV SN +RA+CNM +E Y
Sbjct: 295 ISDEQKAKICQRLAEADKCLLDGADESLQLMDVCSNTMRALCNMTQECSY 344
>gi|224106792|ref|XP_002333632.1| predicted protein [Populus trichocarpa]
gi|222837855|gb|EEE76220.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/264 (85%), Positives = 240/264 (90%)
Query: 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117
K+ HQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL+GPELYKS VL
Sbjct: 11 KRCSSSRHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKSMVL 70
Query: 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRR 177
ELNASDDRGINVV TKIK FA+VAVGSGQ +GGYPCPPYKI ILDEADSMTEDAQNALR
Sbjct: 71 ELNASDDRGINVVWTKIKDFASVAVGSGQCQGGYPCPPYKITILDEADSMTEDAQNALRL 130
Query: 178 TMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAE 237
TMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+ SSR+LHICNEEGL LD E
Sbjct: 131 TMETFSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEITSSRILHICNEEGLTLDGE 190
Query: 238 ALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDF 297
ALSTLSSISQGDL RAITYLQGAARLFGSSI+S+DLISVSG I EV E L+ C+SGDF
Sbjct: 191 ALSTLSSISQGDLCRAITYLQGAARLFGSSISSEDLISVSGAIRQEVTEALYEACKSGDF 250
Query: 298 DLANKEVNNIIAEGYPASLLLSQL 321
DLANKEVNNIIAEGYP S +L+Q+
Sbjct: 251 DLANKEVNNIIAEGYPVSQILAQV 274
>gi|449523838|ref|XP_004168930.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 219
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/218 (94%), Positives = 212/218 (97%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAV SGQR+GGYPCPP+KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
R+LHI NEEGL+LD EALSTLSSISQGDLRRAITYLQ
Sbjct: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQ 218
>gi|384252312|gb|EIE25788.1| putative replication factor C 37 kDa subunit [Coccomyxa
subellipsoidea C-169]
Length = 329
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/325 (60%), Positives = 245/325 (75%), Gaps = 2/325 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWV+KYRPK V +VAHQEEVV L LE+AN PH+LFYGPPGTGKT+TALA+A QL+
Sbjct: 5 AQPWVDKYRPKSVNEVAHQEEVVHTLQKALESANLPHLLFYGPPGTGKTSTALAMARQLY 64
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
GPEL K+RV ELNASD+RGINVVR KIK+FAA +VG Q GYPCPP+K++ILDEAD+M
Sbjct: 65 GPELAKARVKELNASDERGINVVREKIKSFAATSVG--QPVPGYPCPPFKLLILDEADAM 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQNALRRTME +SKVTRF FICNY+SRIIEPLASRCAKFRF+PL +MS+R+ HIC
Sbjct: 123 TQDAQNALRRTMEAHSKVTRFIFICNYVSRIIEPLASRCAKFRFRPLHGGIMSARISHIC 182
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
NEEG+ L A+ TL +S GDLR+AIT LQ A RL G + + L+ VSG +P V +
Sbjct: 183 NEEGVQLQEGAMETLGKVSGGDLRKAITTLQSAVRLKGLQVEPQTLLDVSGAVPESVTQS 242
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
L CR+ + + IA+G+ A LL + +++ + + D Q+ARIC LAE D
Sbjct: 243 LLQACRTRTVSSVQAAITDAIADGWGAQQLLLEFQAGLLKDQTLKDPQRARICTVLAEAD 302
Query: 348 KCLVDGADEYLQLLDVASNVIRAVC 372
KCLVDGADE+LQLL VAS +A+C
Sbjct: 303 KCLVDGADEFLQLLHVASVAQQAIC 327
>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/326 (60%), Positives = 243/326 (74%), Gaps = 3/326 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+SQPWVEKYRP+ + DVAHQEEVVR L LETAN PHMLFYGPPGTGKTT ALAI QL
Sbjct: 4 TSQPWVEKYRPRNINDVAHQEEVVRTLEKALETANMPHMLFYGPPGTGKTTCALAICRQL 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRVLELNASD+RGI+VVR KIK FA+ AVG G GYP PPYKI+ILDEADS
Sbjct: 64 YGPELIKSRVLELNASDERGISVVRNKIKGFASTAVGQGAP--GYPSPPYKILILDEADS 121
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQ+ALRRTMETYSKVTRFF +CNYISRIIEP+ASRCAKFRFKPL EVM R+ I
Sbjct: 122 MTNDAQSALRRTMETYSKVTRFFILCNYISRIIEPIASRCAKFRFKPLGHEVMGDRLKFI 181
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSGVIPPEVV 285
EGL L S+ S GD+R+AIT LQ AARLFG+ +IT K++ +V+G + + V
Sbjct: 182 ATAEGLTLGEGCYEACSTHSGGDMRKAITLLQSAARLFGTATITGKEITAVAGAVDEDQV 241
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ A+C++ D AN+ + +I+ +G+P +++Q + VV+ E +SD + +IC +AE
Sbjct: 242 AQVVALCKTNQVDGANRIIESILKDGFPGLQIITQFAERVVDDEGVSDAVKGKICARIAE 301
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAV 371
DK LVDGADE LQL+ + S A+
Sbjct: 302 ADKALVDGADESLQLMAIVSTACVAM 327
>gi|388513801|gb|AFK44962.1| unknown [Lotus japonicus]
Length = 231
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/210 (90%), Positives = 204/210 (97%), Gaps = 1/210 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QSSQPWVEKYRPKQV+DVA+Q+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIVQSSQPWVEKYRPKQVEDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ ++GGYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDL 250
SR+L+ICNEEG+ LDAE LSTLSSISQGDL
Sbjct: 181 SRILYICNEEGI-LDAEGLSTLSSISQGDL 209
>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 331
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/320 (60%), Positives = 239/320 (74%), Gaps = 3/320 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
SS PWVEKYRP+++ DV+HQEEVVR L LETAN PHMLFYGPPGTGKTT ALAI QL
Sbjct: 5 SSVPWVEKYRPRKIGDVSHQEEVVRTLQKALETANMPHMLFYGPPGTGKTTCALAICRQL 64
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GP+L+KSRVLELNASD+RGI+VVR KIK FA+ AVG Q GYPCPPYKI+ILDEADS
Sbjct: 65 YGPDLFKSRVLELNASDERGISVVRNKIKGFASTAVG--QAVPGYPCPPYKILILDEADS 122
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQ+ALRRTMET+SKVTRFF +CNY+SRIIEP+ASRCAKFRFKPL EVMS R+ HI
Sbjct: 123 MTTDAQSALRRTMETHSKVTRFFILCNYVSRIIEPIASRCAKFRFKPLGSEVMSDRLKHI 182
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVV 285
EGL L + S GD+R+AIT LQ +ARLFG+ +T +D+I+V+G I + V
Sbjct: 183 AEREGLTLGEGVYDAAAKHSGGDMRKAITLLQSSARLFGAKELTGEDIIAVAGAIAEDDV 242
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
L +C FD A +++ ++ +G+P +L+Q D V +E+ SD +ARIC AE
Sbjct: 243 AELLDLCGKNAFDRAIGKLDVMLRDGFPGLQILTQFADAVTNSENCSDGVKARICLAAAE 302
Query: 346 VDKCLVDGADEYLQLLDVAS 365
DK L+DG+D+ LQL V S
Sbjct: 303 ADKALIDGSDDSLQLGAVVS 322
>gi|344282143|ref|XP_003412834.1| PREDICTED: replication factor C subunit 4 [Loxodonta africana]
Length = 373
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/332 (57%), Positives = 251/332 (75%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK+V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKRVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRVLELNASD+RGI VVR K+K+FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRSRVLELNASDERGIQVVREKVKSFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKT 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L ++S+GDLR+AIT+LQ A RL G +T K ++ ++
Sbjct: 207 QQQRLLDIAEKENVKITNEGIAYLINVSEGDLRKAITFLQSATRLTAGKEVTEKVIMDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+FAVC+SG FD V ++I EG+PA+ L++Q DVVVE +SD+Q++
Sbjct: 267 GVIPAETIDGIFAVCQSGSFDKLEAVVKDLIDEGHPATQLVNQFHDVVVENHHLSDKQKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVD+CL DGADE+LQL+ + + V++
Sbjct: 327 VITEKLAEVDQCLADGADEHLQLISLCATVMQ 358
>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
Length = 332
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/333 (61%), Positives = 240/333 (72%), Gaps = 11/333 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+QPWVEKYRPK V +VA+QEEVV LT LETAN PH+LFYGPPGTGKT+TALAIA QL
Sbjct: 2 STQPWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRVLELNASD+RGI+VVR K+K FAA AVG+ GYPCPPYK++ILDEADS
Sbjct: 62 YGPELMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVP--GYPCPPYKLLILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQNALRRTMETYS+VTRF FICNY+SRIIEPLASRCAKFRFKPL +M+ R+ HI
Sbjct: 120 MTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHI 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
C E + L AL TLS++S GDLRRAI LQ AARL G + L+ VSG + PEVV
Sbjct: 180 CERESVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGGGHVDRATLLDVSGQVAPEVVS 239
Query: 287 GL----FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC-- 340
L A +G F K+V NIIAEGY A +L QL ++ D + R+C
Sbjct: 240 SLAAACRATGAAGRFGALQKQVQNIIAEGYAAQQVLLQLQAELLSGADGGSD--LRLCGA 297
Query: 341 -KCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372
+ LA D LV GADE LQLL+V V A+
Sbjct: 298 LEALAGADYSLVVGADEALQLLNVTGQVHAALA 330
>gi|410970795|ref|XP_003991862.1| PREDICTED: replication factor C subunit 4 [Felis catus]
Length = 362
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/332 (58%), Positives = 249/332 (75%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 86 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 204
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 205 QQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 264
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++GLFA C+SG FD V N+I EG+ A+ L++QL DVVVE +++SD+Q++
Sbjct: 265 GVIPAETIDGLFAACQSGSFDKLEGVVKNLIDEGHAATQLVNQLHDVVVENDNLSDKQKS 324
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 325 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 356
>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
Length = 332
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/333 (61%), Positives = 239/333 (71%), Gaps = 11/333 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+QPWVEKYRPK V +VA+QEEVV LT LETAN PH+LFYGPPGTGKT+TALAIA QL
Sbjct: 2 STQPWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRVLELNASD+RGI+VVR K+K FAA AVG+ GYPCPPYK++ILDEADS
Sbjct: 62 YGPELMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVP--GYPCPPYKLLILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQNALRRTMETYS+VTRF FICNY+SRIIEPLASRCAKFRFKPL +M+ R+ HI
Sbjct: 120 MTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHI 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
C E + L AL TLS++S GDLRRAI LQ AARL + L+ VSG + PEVV
Sbjct: 180 CERESVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGAGHVDRATLLDVSGQVAPEVVS 239
Query: 287 GL----FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC-- 340
L A +G F K+V NIIAEGY A +L QL ++ D + R+C
Sbjct: 240 SLAAACRATGAAGRFGALQKQVQNIIAEGYAAQQVLLQLQAELLSGADGGSD--LRLCGA 297
Query: 341 -KCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372
+ LA D LV GADE LQLL+V V A+
Sbjct: 298 LEALAGADYSLVVGADEALQLLNVTGQVHAALA 330
>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
gallopavo]
Length = 362
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/332 (57%), Positives = 246/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+++ P+ PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KRLKPI-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI
Sbjct: 86 ILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRADGEVCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 204
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L + +E + + +EA+S L +S+GDLR+AITYLQ A RL G IT K + ++
Sbjct: 205 QQQRLLDVSEKENVKITSEAVSYLVKVSEGDLRKAITYLQSATRLMGGKEITEKTVTEIA 264
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++GL + C SG F+ N+I+EGY + L+SQL D+VVE+ED SD+Q++
Sbjct: 265 GVIPRETIDGLLSACWSGSFEKLETVAKNLISEGYAVAQLISQLHDLVVESEDFSDKQKS 324
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADEYLQL+ + + V++
Sbjct: 325 IIVEKLAEVDKCLADGADEYLQLISLCALVMQ 356
>gi|348582722|ref|XP_003477125.1| PREDICTED: replication factor C subunit 4-like [Cavia porcellus]
Length = 363
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/321 (58%), Positives = 242/321 (75%), Gaps = 2/321 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 38 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+L++SRVLELNASD+RGI VVR K+K FA +AV SG R G PCPP+KI+ILDEADSMT
Sbjct: 98 DLFRSRVLELNASDERGIQVVREKVKNFAQLAV-SGSRSDGKPCPPFKIVILDEADSMTS 156
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +
Sbjct: 157 AAQAALRRTMEKESKATRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEK 216
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVVEGL 288
E + + E + L +S+GDLR+AIT+LQ A RL G + K + ++GVIP E + G+
Sbjct: 217 ENVKISNEGIEYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITDIAGVIPAETIGGI 276
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
FA C+SG FD V ++I EG+ A+ L+SQL D VVE +++SD+Q++ I + LAEVDK
Sbjct: 277 FAACKSGSFDKLEAAVKDLINEGHAATQLVSQLHDAVVENDNLSDKQKSIITEKLAEVDK 336
Query: 349 CLVDGADEYLQLLDVASNVIR 369
CL DGADEYLQL+ + + +++
Sbjct: 337 CLTDGADEYLQLISLCATLMQ 357
>gi|194222681|ref|XP_001498117.2| PREDICTED: replication factor C subunit 4 [Equus caballus]
Length = 364
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/332 (57%), Positives = 247/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIAGKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++GL A C+SG FD V N+I EG+ A+ L++QL DV+VE +++SD+Q++
Sbjct: 267 GVIPAETIDGLLAACQSGSFDKLEAAVKNLIDEGHAATQLVNQLHDVIVENDNLSDKQKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 327 IITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
>gi|354492255|ref|XP_003508264.1| PREDICTED: replication factor C subunit 4 [Cricetulus griseus]
gi|344245879|gb|EGW01983.1| Replication factor C subunit 4 [Cricetulus griseus]
Length = 362
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/358 (55%), Positives = 257/358 (71%), Gaps = 8/358 (2%)
Query: 13 KNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRV 72
K S + +F+ ++ P S E K K+ PV PWVEKYRPK V +VA QEEVV V
Sbjct: 6 KGTSVSTKPQFTKDRAIPTGSSGETK-KVKPV-----PWVEKYRPKCVDEVAFQEEVVAV 59
Query: 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132
L +LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR
Sbjct: 60 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 119
Query: 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192
K+K FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF IC
Sbjct: 120 KVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 178
Query: 193 NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252
NY+SRIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+
Sbjct: 179 NYVSRIIEPLTSRCSKFRFKPLSDKIQRERLLDIAEKENVKISHEVIAYLVKVSEGDLRK 238
Query: 253 AITYLQGAARLFGSSITSKDLIS-VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEG 311
AIT+LQ A RL G +D+I+ ++GVIP ++G+F C+SG FD V ++I EG
Sbjct: 239 AITFLQSATRLTGGKEVMRDVITDIAGVIPATTIDGIFTACQSGSFDKLEAVVKDLIDEG 298
Query: 312 YPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
A L++QL DVVVE ED+SD+Q++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 299 QAAVQLVNQLHDVVVENEDLSDKQKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQ 356
>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
Length = 359
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/331 (57%), Positives = 243/331 (73%), Gaps = 7/331 (2%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+
Sbjct: 87 LAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRADGKVCPPFKIV 145
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 146 ILDEADSMTSAAQGALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQ 205
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSG 278
R+L + +E + + +EA+S L +S GDLR+AITYLQ A RL G IT K + ++G
Sbjct: 206 QQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAG 265
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
VIP E ++GL + C SG F+ N+I EGY + L++QL D+VVE+ED SD+Q++
Sbjct: 266 VIPRETIDGLLSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKSI 325
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADEYLQL+ + + V++
Sbjct: 326 IVEKLAEVDKCLADGADEYLQLISLCALVMQ 356
>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
Length = 364
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/332 (57%), Positives = 249/332 (75%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVSVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G ++++I+ ++
Sbjct: 207 QQQRLLDIAEKENVIISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTENVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIPPE + G+FA C+ G FD V ++I EG+ A+ +++QL DVVVE +D+SD+Q++
Sbjct: 267 GVIPPETINGIFAACQGGSFDKLEGVVKDLIDEGHAATQVVNQLHDVVVENDDLSDKQKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQLL + + V++
Sbjct: 327 IITEKLAEVDKCLADGADEHLQLLSLCATVMQ 358
>gi|431838862|gb|ELK00791.1| Replication factor C subunit 4 [Pteropus alecto]
Length = 394
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/332 (57%), Positives = 248/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 63 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 117
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 118 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 176
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 177 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 236
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E +S L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 237 QQQRLLDIAGKEHVKISNEGVSYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 296
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+FA C+SG FD V ++I EG+ A+ L++QL DV+VE +++SD+Q++
Sbjct: 297 GVIPAETIDGIFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVIVENDNLSDKQKS 356
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 357 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 388
>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
melanoleuca]
gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
Length = 363
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/332 (56%), Positives = 248/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V ++A QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KKTKPV-----PWVEKYRPKCVDEIAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 86
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 87 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 145
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 146 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 205
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 206 QQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 265
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP + ++G+FA C+SG FD V ++I EG+ A+ L++Q DVVVE +++SD+Q++
Sbjct: 266 GVIPAQTIDGIFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQFHDVVVENDNLSDKQKS 325
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 326 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|426217726|ref|XP_004003103.1| PREDICTED: replication factor C subunit 4 isoform 1 [Ovis aries]
Length = 364
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/332 (56%), Positives = 249/332 (75%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GV+P + ++G+FA C+SG FD V ++I EG+ A+ L++QL DVVVE +++SD+Q++
Sbjct: 267 GVVPAKTIDGVFAACQSGSFDKLEAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 327 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 358
>gi|440891701|gb|ELR45251.1| Replication factor C subunit 4 [Bos grunniens mutus]
Length = 364
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/332 (56%), Positives = 249/332 (75%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GV+P + ++G+FA C+SG FD V ++I EG+ A+ L++QL DVVVE +++SD+Q++
Sbjct: 267 GVVPAKTIDGVFAACQSGSFDKLEAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 327 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 358
>gi|351709587|gb|EHB12506.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 364
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/332 (56%), Positives = 248/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRVLELNASD+RGI VVR K+K FA +AV SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRSRVLELNASDERGIQVVREKVKNFAQLAV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY++RIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVTRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G + K + ++
Sbjct: 207 QQQRLLDIAEKENVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+FA C+SG FD V N+I EG+ A+ L++Q+ D +VE +++SD+Q++
Sbjct: 267 GVIPAETIDGVFAACQSGSFDKLEAVVKNLINEGHAATQLINQVHDAIVENDNLSDKQKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
+ + LAE DKCL DGADE+LQL+ + + V++
Sbjct: 327 IMTEKLAEADKCLADGADEHLQLISLCAIVMQ 358
>gi|57109940|ref|XP_535837.1| PREDICTED: replication factor C subunit 4 [Canis lupus familiaris]
Length = 363
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/332 (57%), Positives = 246/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KKTKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 86
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 87 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 145
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 146 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 205
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 206 QQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 265
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP ++G+FA C+SG FD V ++I EG+ A+ L+SQ DVVVE +++SD+Q++
Sbjct: 266 GVIPAGTIDGIFAACQSGSFDKLEAVVKDLIDEGHAATQLVSQFHDVVVENDNLSDKQKS 325
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAE DKCL DGADE+LQL+ + + V++
Sbjct: 326 IITEKLAEADKCLADGADEHLQLISLCATVMQ 357
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/332 (58%), Positives = 247/332 (74%), Gaps = 8/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
RK PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 RKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+FA C+SG FD V ++I EG+ A+ L++QL DVVVE ++SD+Q++
Sbjct: 267 GVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVEN-NLSDKQKS 325
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 326 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
gi|81916548|sp|Q99J62.1|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
Length = 364
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/332 (56%), Positives = 246/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VS 277
R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I+ ++
Sbjct: 207 QQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP ++G+F C SG FD V N+I EG+ A+ L++QL D ++E E++SD+ ++
Sbjct: 267 GVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 327 IITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
>gi|350591807|ref|XP_003483338.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
Length = 364
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/332 (56%), Positives = 246/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+ A C+SG FD V ++I EG+ A+ ++QL DVVVE +++SD+Q++
Sbjct: 267 GVIPTETIDGVLAACQSGSFDKLEAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAE DKCL DGADE+LQL+ + + V++
Sbjct: 327 VITEKLAEADKCLADGADEHLQLISLCATVMQ 358
>gi|126338206|ref|XP_001370165.1| PREDICTED: replication factor C subunit 4 [Monodelphis domestica]
Length = 366
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/343 (55%), Positives = 253/343 (73%), Gaps = 8/343 (2%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
S+P+ S E R+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LF
Sbjct: 24 SAPQGSSAE-SRRAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLF 77
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
YGPPGTGKT+T LA A +L+GPEL++ RVLELNASD+RGI V+R K+KTFA + V SG R
Sbjct: 78 YGPPGTGKTSTILAAARELYGPELFRQRVLELNASDERGIQVIREKVKTFAQLTV-SGSR 136
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+
Sbjct: 137 SDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCS 196
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
KFRFKPLS+++ R+L I +E + ++ E ++ L +S+GDLR+AIT+LQ A RL G
Sbjct: 197 KFRFKPLSDKIQHQRLLDISEKENVKINNEGIAYLVKVSEGDLRKAITFLQSATRLTGGQ 256
Query: 268 -ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVV 326
+T K + ++GV+P + G+F C+SG F+ V ++I EG+ A+ L++QL DVVV
Sbjct: 257 EVTEKVITEIAGVVPTGTITGIFYACQSGSFEKLEALVKDLIDEGHAATQLINQLHDVVV 316
Query: 327 ETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
E +D++D+Q++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 317 EKDDLTDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 359
>gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi]
gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/331 (55%), Positives = 242/331 (73%), Gaps = 5/331 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S QPW EKYRPK V DV HQEEVV L +LE N PH+LFYGPPG GKT+TA AIA Q
Sbjct: 4 KSQQPWTEKYRPKTVDDVVHQEEVVSALKKSLEVGNLPHLLFYGPPGNGKTSTATAIAKQ 63
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIILDEA 164
LFGPELYK+RVLELNASD+RGINV+RTK+KTFA AV +G YPCPP+KIIILDEA
Sbjct: 64 LFGPELYKTRVLELNASDERGINVIRTKVKTFAQTAVSENPTGKGKYPCPPFKIIILDEA 123
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY+SRII+P+ SRCAKFRFKPL ++ R+
Sbjct: 124 DSMTVDAQSALRRTMETYSNVTRFCLICNYVSRIIDPITSRCAKFRFKPLEYSLLKERLQ 183
Query: 225 HICNEEGLNL-DAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPE 283
+I N+EG+ L D + L T+ S+GDLR+AIT LQ A+R+FG++I+ + +SG++P E
Sbjct: 184 YIANQEGITLKDEKVLDTIVGHSEGDLRKAITTLQSASRMFGNAISQNHIAEISGLVPDE 243
Query: 284 VVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE---DISDEQQARIC 340
++E + + + D + VN II +G+ A +++QL ++ + D Q+++I
Sbjct: 244 IIEEILTLSQQTDLGVIRSGVNKIIKQGFAAYQIITQLGRYLLSEACCVKMDDIQRSKIL 303
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
++E DKCL+DGADE+LQLL +AS + + +
Sbjct: 304 LKISECDKCLIDGADEFLQLLSLASYISKTL 334
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/354 (55%), Positives = 254/354 (71%), Gaps = 11/354 (3%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+
Sbjct: 185 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITF 244
Query: 257 LQGAARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPAS 315
LQ A RL G IT K + ++GVIP E ++G+FA C+SG FD V ++I EG+ A+
Sbjct: 245 LQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAAT 304
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
L++QL DVVVE ++SD+Q++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 305 QLVNQLHDVVVEN-NLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/354 (55%), Positives = 254/354 (71%), Gaps = 11/354 (3%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+
Sbjct: 185 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITF 244
Query: 257 LQGAARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPAS 315
LQ A RL G IT K + ++GVIP E ++G+FA C+SG FD V ++I EG+ A+
Sbjct: 245 LQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAAT 304
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
L++QL DVVVE ++SD+Q++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 305 QLVNQLHDVVVEN-NLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/332 (57%), Positives = 247/332 (74%), Gaps = 8/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+FA C+SG FD V ++I EG+ A+ L++QL DVVVE ++SD+Q++
Sbjct: 267 GVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVEN-NLSDKQKS 325
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 326 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
Length = 364
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/332 (56%), Positives = 246/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VS 277
R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I+ ++
Sbjct: 207 QQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP +EG+ C SG FD + N+I EG+ A+ L++QL D ++E E++SD+Q++
Sbjct: 267 GVIPAATIEGIVTACHSGSFDKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 327 IITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
>gi|395839806|ref|XP_003792767.1| PREDICTED: replication factor C subunit 4 [Otolemur garnettii]
Length = 365
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/332 (56%), Positives = 247/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 34 KKAKPV-----PWVEKYRPKSVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 88
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + V SG R G CPP+KI
Sbjct: 89 ILAAARELFGPELFRLRVLELNASDERGIQVIREKVKNFAQLTV-SGSRSDGKLCPPFKI 147
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 148 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 207
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L+I +E + + +E ++ L +S+GDLR+AIT+LQ A RL G IT + + ++
Sbjct: 208 QQQRLLNITEKENVKISSEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEEVITDIA 267
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+FA C+SG FD V ++I EG+ A+ L++QL DVVVE + +SD+Q++
Sbjct: 268 GVIPSETIDGVFAACQSGSFDKLETVVKDLIIEGHAATQLVNQLHDVVVENDTLSDKQKS 327
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAE DKCL DGADE+LQL+ + + V++
Sbjct: 328 IITEKLAEADKCLADGADEHLQLISLCATVMQ 359
>gi|388454302|ref|NP_001253606.1| replication factor C subunit 4 [Macaca mulatta]
gi|355560107|gb|EHH16835.1| hypothetical protein EGK_12194 [Macaca mulatta]
gi|380815324|gb|AFE79536.1| replication factor C subunit 4 [Macaca mulatta]
gi|383420509|gb|AFH33468.1| replication factor C subunit 4 [Macaca mulatta]
Length = 363
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/332 (57%), Positives = 246/332 (74%), Gaps = 8/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT + + ++
Sbjct: 207 QQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+FA C+SG FD V ++I EG+ A+ +SQL DVVVE ++SD+Q++
Sbjct: 267 GVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQFVSQLHDVVVEN-NLSDKQKS 325
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 326 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|355784873|gb|EHH65724.1| hypothetical protein EGM_02550 [Macaca fascicularis]
Length = 363
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/332 (57%), Positives = 246/332 (74%), Gaps = 8/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT + + ++
Sbjct: 207 QQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+FA C+SG FD V ++I EG+ A+ +SQL DVVVE ++SD+Q++
Sbjct: 267 GVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQFVSQLHDVVVEN-NLSDKQKS 325
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 326 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/332 (57%), Positives = 247/332 (74%), Gaps = 8/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+FA C+SG FD V ++I EG+ A+ L++Q+ DVVVE ++SD+Q++
Sbjct: 267 GVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQVHDVVVEN-NLSDKQKS 325
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 326 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|449277649|gb|EMC85743.1| Replication factor C subunit 4 [Columba livia]
Length = 362
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/321 (57%), Positives = 239/321 (74%), Gaps = 2/321 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 37 PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+ILDEADSMT
Sbjct: 97 ELFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRSDGKVCPPFKIVILDEADSMTS 155
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++ R+L + +
Sbjct: 156 AAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEK 215
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVVEGL 288
E + + +EA+S L +S+GDLR+AIT+LQ A RL G IT K + ++GVIP E ++ L
Sbjct: 216 EHVKISSEAVSYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIVTEIAGVIPKETIDEL 275
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+VC+SG F+ N+I EGY + L++QL D VVE+E D++++ I + LAEVDK
Sbjct: 276 LSVCQSGSFEKLETLAKNLINEGYAVAQLVNQLHDAVVESEAYRDKEKSAIVEKLAEVDK 335
Query: 349 CLVDGADEYLQLLDVASNVIR 369
CLVDGADEYLQL+ + + V++
Sbjct: 336 CLVDGADEYLQLMSLCALVMQ 356
>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/354 (55%), Positives = 253/354 (71%), Gaps = 11/354 (3%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RIIEPL SRC+KF FKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+
Sbjct: 185 RIIEPLTSRCSKFSFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITF 244
Query: 257 LQGAARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPAS 315
LQ A RL G IT K + ++GVIP E ++G+FA C+SG FD V ++I EG+ A+
Sbjct: 245 LQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAAT 304
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
L++QL DVVVE ++SD+Q++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 305 QLVNQLHDVVVEN-NLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
Length = 355
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/325 (56%), Positives = 245/325 (75%), Gaps = 3/325 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q S PWVEKYRPK +++VA QEEVV VL T+E A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 29 QKSVPWVEKYRPKCMEEVAFQEEVVAVLKKTIEGADLPNLLFYGPPGTGKTSTILAAARE 88
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPELY+ RVLELNASD+RGI VVR K+K FA + V +G R G PCPP+KIIILDEAD
Sbjct: 89 LYGPELYRQRVLELNASDERGIQVVREKVKRFAQLTV-AGHRTDGKPCPPFKIIILDEAD 147
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRTME S+ TRF ICNYISRIIEPL SRC+KFRFKPL+ +V R+L
Sbjct: 148 SMTNAAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQVQEERLLD 207
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEV 284
IC++E L E ++ L +S+GDLR+AIT+LQ AARL + IT +I ++GV+PP++
Sbjct: 208 ICDKENLKYSKEGIAALVKVSEGDLRKAITFLQSAARLNTDNEITESAVIEIAGVVPPKM 267
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
++ L +C G F+ V N++ EGY A+ +++QL + ++E E+++D+Q++ I + +A
Sbjct: 268 IDNLLKICYKGTFEKLEIAVRNMVDEGYAATQIINQLHEAIIE-EELNDKQKSAITEKMA 326
Query: 345 EVDKCLVDGADEYLQLLDVASNVIR 369
VDKCLVDGADEYLQ+L + S +++
Sbjct: 327 VVDKCLVDGADEYLQMLSLCSVIMQ 351
>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
Length = 360
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/332 (56%), Positives = 246/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KKQKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 86
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA + +L+GPEL++ RVLELNASD+RGI VVR K+K FA + VG G R G PCPP+KI
Sbjct: 87 ILAASRELYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVG-GTRSDGKPCPPFKI 145
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPL++++
Sbjct: 146 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKI 205
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
+ R+L IC +E + + EA+S L +S+GDLR+AIT+LQ A RL G IT + + ++
Sbjct: 206 QTQRLLSICEKENVKITNEAISCLVEVSEGDLRKAITFLQSATRLTGGKEITEEIVTEIA 265
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GV+P E ++ + C+SG F+ V N+I G+ A+ L++QL DV++E D++D+Q+A
Sbjct: 266 GVVPKETLDCVLVACQSGSFEKLETVVKNLINNGHAATQLVNQLHDVILERGDLTDKQKA 325
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADEYLQ+L + + V++
Sbjct: 326 FITEKLAEVDKCLADGADEYLQMLGLFAVVMQ 357
>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
Length = 363
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/325 (56%), Positives = 245/325 (75%), Gaps = 2/325 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK V +VA Q+EVV VL +L+ A+ P++LFYGPPGTGKT+T LA + +
Sbjct: 34 QKPIPWVEKYRPKCVDEVAFQDEVVAVLKKSLQGADLPNLLFYGPPGTGKTSTILAASRE 93
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPEL++ RVLELNASD+RGI VVR K+K FA + VG G R G PCPP+KIIILDEAD
Sbjct: 94 LYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVG-GTRSDGKPCPPFKIIILDEAD 152
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPL++++ + R+L
Sbjct: 153 SMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLLS 212
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEV 284
IC +E + + EA+S L +S+GDLR+AIT+LQ AARL G IT + + ++GV+P E
Sbjct: 213 ICEKENVQITNEAISCLVEVSEGDLRKAITFLQSAARLTRGKEITEEIVTEIAGVVPKET 272
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
++ + VC+SG F+ V ++I G+ A+ L++QL DV++E D++D+Q+A I + LA
Sbjct: 273 LDSVLVVCQSGSFEKLENFVKDLINNGHAATQLVNQLHDVILERGDLTDKQKAFITEKLA 332
Query: 345 EVDKCLVDGADEYLQLLDVASNVIR 369
+VDKCL DGADEYLQ+L + + V++
Sbjct: 333 DVDKCLTDGADEYLQMLGLFAVVMQ 357
>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
Length = 342
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/329 (56%), Positives = 237/329 (72%), Gaps = 3/329 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK V+DVA QE+VVRVL LET N PH LFYGPPGTGKTT ALAIA QL
Sbjct: 14 AHQPWVEKYRPKTVRDVASQEQVVRVLEQALETGNMPHCLFYGPPGTGKTTCALAIAKQL 73
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPELYK RV ELNASD+RGI+VVR K+KTFA++AVG+ GYP PPYKI+ILDEAD+
Sbjct: 74 YGPELYKQRVKELNASDERGISVVRDKVKTFASLAVGAPA--PGYPSPPYKILILDEADA 131
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQ+A+RR METYSKVTRFF +CNY+++II+P+ SRCAKFRF+PL+ E M++R+ +I
Sbjct: 132 MTTDAQSAMRRMMETYSKVTRFFLLCNYVTKIIDPITSRCAKFRFQPLALETMTTRLKYI 191
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
+E L L + S S GD+R+AIT LQ AARLF + + ++ V+G IP +
Sbjct: 192 AEQESLELSDDVFPACSKHSGGDMRKAITLLQSAARLFSGKVDAAGIVEVAGYIPDVKLT 251
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
L +C+SGDFD A + +I+ +GY ++ QL D+V+E D SDE + I + EV
Sbjct: 252 TLLDLCKSGDFDKAQAHMEDILRDGYSGIKIMDQLSDIVLEA-DCSDEIKGDIFMKMGEV 310
Query: 347 DKCLVDGADEYLQLLDVASNVIRAVCNMP 375
D+ L GADE LQL V S+ I++ P
Sbjct: 311 DRALAQGADEGLQLATVVSSAIKSFEKYP 339
>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
Length = 363
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/332 (57%), Positives = 243/332 (73%), Gaps = 8/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAERENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++G+ A C+SG FD V ++I EG+ A+ L+SQL DVVVE ++ D+Q++
Sbjct: 267 GVIPAEKIDGVLAACQSGSFDKLEAVVKDLIDEGHAATQLVSQLHDVVVEN-NLPDKQKS 325
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAE DKCL DGADE+LQL+ + + V++
Sbjct: 326 IITEKLAEADKCLADGADEHLQLISLCATVMQ 357
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/326 (54%), Positives = 235/326 (72%), Gaps = 1/326 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK V DVAHQ+EV L + T PH+LFYGPPGTGKT+TALA+A LFG
Sbjct: 28 QPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALARTLFG 87
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P+ Y+ R+LELNASD+RGI VVR KIKTFA VAVG + GYPCPP+K+IILDEAD+MT
Sbjct: 88 PDTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEADTMT 147
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTMETYS VTRF ICNY++RIIEPLASRCAKFRF L + M R+ +I
Sbjct: 148 PDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISR 207
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEG 287
EE + + A+ L + +S GD+R+A+T +Q A++ + G+ +T + L+ ++G IP EV E
Sbjct: 208 EEDVKIAADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKEA 267
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
L++ +SG ++ V++ ++ GYP S LL + + V I D ++A IC+ +AE D
Sbjct: 268 LWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEAD 327
Query: 348 KCLVDGADEYLQLLDVASNVIRAVCN 373
+CL+DG +E LQLLD+AS R+ C+
Sbjct: 328 RCLIDGCNEELQLLDLASVAARSCCS 353
>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
Length = 358
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/325 (56%), Positives = 240/325 (73%), Gaps = 3/325 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 30 QRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GP+LY+ RVLELNASD+RGI VVR K+K FA + V +G R G CPP+KIIILDEAD
Sbjct: 90 LYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTV-AGTRPDGKTCPPFKIIILDEAD 148
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRTME S+ TRF ICNY+SRIIEPL SRC+KFRFKPL+ +V R+L
Sbjct: 149 SMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILE 208
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSGVIPPEV 284
IC +E L E + L +S+GDLR+AIT+LQ ARL IT + +I ++GV+PP+V
Sbjct: 209 ICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAGVVPPKV 268
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
++ L +C G F+ V ++I +GY A+ LL+QL DV++E E +SD+Q++ I + +A
Sbjct: 269 IQSLLHICYKGTFEKLEVAVKDMIDQGYAATNLLNQLHDVIIE-EQLSDKQKSVITEKMA 327
Query: 345 EVDKCLVDGADEYLQLLDVASNVIR 369
EVDKCL DGADEYLQLL + S +++
Sbjct: 328 EVDKCLADGADEYLQLLSLCSVIMQ 352
>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
Length = 358
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 245/350 (70%), Gaps = 5/350 (1%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K ST P+K + Q PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 6 KGSTQGVKPQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 65
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +L+GPELY+ RVLELNASD+RGI V+R K+K FA +
Sbjct: 66 LPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKNFAQLT 125
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
V +G R G CPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SRIIEP
Sbjct: 126 V-AGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSRIIEP 184
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
L SRC+KFRFKPL+ EV R+L IC +E L E + L +S+GDLR+AIT LQ A
Sbjct: 185 LTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLLQSTA 244
Query: 262 RLFGS--SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319
R FG+ IT +I ++GV+PP+V+E L C G+F+ V N++ EGY A+ +LS
Sbjct: 245 R-FGAEKEITESLVIEIAGVVPPKVIENLLQTCYKGNFEKLEVAVKNLVDEGYAATQILS 303
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
Q DV++E E + D+Q++ I + +A VDKCLVDGADEYLQLL++ S +++
Sbjct: 304 QFHDVIIE-EKLGDKQKSVITEKMAVVDKCLVDGADEYLQLLNLCSVIMQ 352
>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C subunit 4 [Taeniopygia guttata]
Length = 362
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/321 (56%), Positives = 236/321 (73%), Gaps = 2/321 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 37 PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+L++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+ILDEADSMT
Sbjct: 97 DLFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRSDGKMCPPFKIVILDEADSMTS 155
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+ + R+L + +
Sbjct: 156 AAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEK 215
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVVEGL 288
E + + EA+S L +S+GDLR+AIT+LQ A RL G IT K + ++GVIP E ++ L
Sbjct: 216 EHVKISNEAISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIITEIAGVIPKETIDEL 275
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
C+SG F+ N+I EG+ + L++QL D +VE+ED SD+Q++ I + LAEVDK
Sbjct: 276 LLGCQSGSFEKLETLAKNLINEGFAVAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDK 335
Query: 349 CLVDGADEYLQLLDVASNVIR 369
CL DGADE+LQL+ + + V++
Sbjct: 336 CLADGADEFLQLMSLCALVMQ 356
>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
carolinensis]
Length = 364
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/325 (56%), Positives = 242/325 (74%), Gaps = 2/325 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +VA QEEVV VL L+ A+ P++LFYGPPGTGKT+T LA A +LFG
Sbjct: 40 PWVEKYRPKCMDEVAFQEEVVAVLKKCLQGADLPNLLFYGPPGTGKTSTILAAARELFGT 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI V+R K+K FA + V SG R G CPP+KI+ILDEADSMT
Sbjct: 100 ELFRQRVLELNASDERGIQVIREKVKRFAQLTV-SGSRSDGKLCPPFKIVILDEADSMTS 158
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNYISRIIEP+ SRC+KFRFKPLS+++ R++ + +
Sbjct: 159 AAQAALRRTMEKESKTTRFCLICNYISRIIEPITSRCSKFRFKPLSDKIQRQRLVEVAEK 218
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVVEGL 288
E + + +EA+S L +S+GDLR+AIT LQ A RL G +T K + ++GVIP E+++G+
Sbjct: 219 ENVAVSSEAISYLVHVSEGDLRKAITLLQSATRLMGGKEVTEKIVTEIAGVIPREMLDGV 278
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
A C+SG F+ N+I EGY A+ L++QL DV+VE ED+SD+Q++ I + LAEVDK
Sbjct: 279 LASCQSGSFEKLEAVTKNLIDEGYAATQLINQLHDVIVEREDLSDKQKSIIAEKLAEVDK 338
Query: 349 CLVDGADEYLQLLDVASNVIRAVCN 373
CLVDG+DE+LQL + + V+ + N
Sbjct: 339 CLVDGSDEFLQLTSLCAVVMEQLQN 363
>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/329 (55%), Positives = 238/329 (72%), Gaps = 3/329 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ VKDVA QE++V VL N L+T N PH LFYGPPGTGKTTTALAIA +
Sbjct: 13 EAHAPWVEKYRPRVVKDVASQEQIVGVLENALKTGNMPHCLFYGPPGTGKTTTALAIAKE 72
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPELYK RV ELNASD+RGI+VVR KIKTFA+ AVG+ GYP PPYKI+ILDEAD
Sbjct: 73 LYGPELYKQRVKELNASDERGISVVRNKIKTFASQAVGAPAP--GYPSPPYKILILDEAD 130
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQ+ALRR METYSKVTRFF +CNY+++II+P+ASRCAKFRF PL++E M +R+
Sbjct: 131 AMTGDAQSALRRMMETYSKVTRFFLLCNYVTKIIDPIASRCAKFRFSPLAQETMGARLKF 190
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EGL + + + S S GD+R+AIT LQ AARLF I+ ++ V+G IP E +
Sbjct: 191 IGEQEGLEMSDDVFAMCSKHSGGDMRKAITLLQSAARLFAGKISGASIVEVAGHIPDEKI 250
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ ++ +CR G F+ A + +I+ +G+ +L Q D V+E D SDE +A I L E
Sbjct: 251 KKMYDLCREGKFEEAQAHMEDILRDGFSGLKILDQYSDYVLEA-DCSDEVKAEIFIKLGE 309
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAVCNM 374
VD+ L GADE +QL + S I+A+ M
Sbjct: 310 VDRFLAQGADEGMQLATLVSTSIKALAKM 338
>gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis]
gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/344 (54%), Positives = 250/344 (72%), Gaps = 4/344 (1%)
Query: 33 SEDEVKRKMAPVL--QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
S +VK+ +A L Q S PWVEKYRPK V DVA QEEVV VL +LE A+ P++LFYGP
Sbjct: 13 SSSKVKQGVAGSLGKQKSSPWVEKYRPKCVDDVAQQEEVVMVLKKSLEGADLPNLLFYGP 72
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA+A +L+G E+ K RVLELNASD+RGI V+R K+KTF+ ++ S R G
Sbjct: 73 PGTGKTSTILAVARELYGHEMLKQRVLELNASDERGIQVIRDKVKTFSQLS-ASASRPDG 131
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
PCPP+K++ILDEADSMT AQ ALRRTME +K TRF ICNY+SRIIEPL SRC+KFR
Sbjct: 132 KPCPPFKLVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYVSRIIEPLTSRCSKFR 191
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-SSIT 269
FKPLS E++ R+ IC +E +N + +A+ + IS+GD+R+AIT+LQ A RL G S I
Sbjct: 192 FKPLSSEILERRLKEICVKEEVNCEDKAIDEVIKISEGDMRKAITFLQSAHRLKGDSGIV 251
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
++D+I ++G IP +++ LF RS + V IIAEG+ AS L+ Q+ D +V+ E
Sbjct: 252 AEDIIEIAGAIPDNLIKSLFDASRSDSYQKLEGVVKEIIAEGHAASQLIGQVHDQIVQME 311
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373
D++D Q++ I + +A VDKCL+DGADEYLQ+L + S +++ C+
Sbjct: 312 DLNDHQKSAIMEKIAIVDKCLIDGADEYLQVLSMCSVMMQQFCH 355
>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
Length = 358
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 242/349 (69%), Gaps = 3/349 (0%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K ST P+K + Q PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 6 KGSTQGVKPQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 65
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +L+GPELY+ RVLELNASD+RGI V+R K+K FA +
Sbjct: 66 LPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKNFAQLT 125
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
V +G R G CPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SRIIEP
Sbjct: 126 V-AGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSRIIEP 184
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
L SRC+KFRFKPL+ EV R+L IC +E L E + L +S+GDLR+AIT LQ A
Sbjct: 185 LTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLLQSTA 244
Query: 262 RLFG-SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQ 320
R IT +I ++GV+PP+V+E L C G+F+ V N++ EGY A+ +LSQ
Sbjct: 245 RFSAEKEITESLVIEIAGVVPPKVIENLLQTCYKGNFEKLEVAVKNLVDEGYAATQILSQ 304
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
DV++E E + D+Q++ I + +A VDKCLVDGADEYLQLL++ S +++
Sbjct: 305 FHDVIIE-EKLGDKQKSVITEKMAVVDKCLVDGADEYLQLLNLCSVIMQ 352
>gi|196003908|ref|XP_002111821.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
gi|190585720|gb|EDV25788.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
Length = 373
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/339 (53%), Positives = 245/339 (72%), Gaps = 15/339 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP+ + DVAHQ+EVV VL L+ A+ P+ LFYGPPGTGKT+T LA A L+
Sbjct: 33 SVPWVEKYRPRSIDDVAHQDEVVSVLRKCLQGADLPNFLFYGPPGTGKTSTILAAARHLY 92
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G ++Y+SRVLELNASDDRGI V+R KIKTFA ++V + QR G PCPP+KIIILDEADSM
Sbjct: 93 GSDIYRSRVLELNASDDRGIQVIREKIKTFAQLSVAN-QRPDGTPCPPFKIIILDEADSM 151
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRTME YSK TRF ICNY+SRIIEPL SRC+KFRFKPL E ++ + I
Sbjct: 152 THAAQAALRRTMEKYSKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLPENILLHHLSAIS 211
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSG-------- 278
+E L+ D +AL + SIS+GD+R+AITY+Q +RL+ ITS+ +I +G
Sbjct: 212 EKENLDCDKQALRNIISISEGDMRKAITYIQSVSRLYNDKRITSERIIESAGVTGLYFSI 271
Query: 279 -----VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISD 333
VIP +++ + CR ++ +K + N+IA+ Y A LLSQL D +V+ +++SD
Sbjct: 272 ASATLVIPDALIDSILETCRLNSYEKLDKIIQNVIADSYSAYQLLSQLHDKIVDVDELSD 331
Query: 334 EQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372
++++ + + +AE+DKCL+DGADEYLQ++ + S++++ VC
Sbjct: 332 KKKSFLAQMMAEIDKCLMDGADEYLQMMKLCSHIMQQVC 370
>gi|340369406|ref|XP_003383239.1| PREDICTED: replication factor C subunit 4-like [Amphimedon
queenslandica]
Length = 363
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/334 (53%), Positives = 240/334 (71%), Gaps = 2/334 (0%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
+ PV + PWVEKYRPK V DV HQ+EVV VL TL ++ P++LFYGPPGTGKT+
Sbjct: 28 QQGPVEKRKVPWVEKYRPKVVDDVVHQDEVVSVLKKTLTGSDFPNLLFYGPPGTGKTSAI 87
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
LAIAH+LFG +LYKSR+LELNASDDRGI V+R K+K+FA + S R G PCP +KI+
Sbjct: 88 LAIAHELFGRDLYKSRILELNASDDRGIQVIRDKVKSFARHS-ASASRPDGKPCPSFKIV 146
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEADSMT+ AQ ALRRTME S TRF ICNYISRIIEPL SRC+KFRFKPLS ++
Sbjct: 147 ILDEADSMTQAAQAALRRTMEKESTSTRFCLICNYISRIIEPLTSRCSKFRFKPLSSAIL 206
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSG 278
+R+ +IC EE + + +A+ + S GD+R+AIT+LQ RL G +T KD++ ++G
Sbjct: 207 RTRLEYICREENVKCNEKAIDRIIETSDGDMRKAITFLQSGYRLKGDEEVTEKDIMEIAG 266
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
V+P ++EGL C S +D V N +AEG+PA +++QL DV++ +++D Q++
Sbjct: 267 VVPQSLIEGLLKTCSSNSYDQLETAVKNFVAEGFPAVQIMNQLNDVIITHCELNDLQKSA 326
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372
IC+ +A VD+ L DGADEYLQLLD++S ++ C
Sbjct: 327 ICEQMAVVDRRLSDGADEYLQLLDISSFIMTQFC 360
>gi|432099509|gb|ELK28652.1| Replication factor C subunit 4 [Myotis davidii]
Length = 427
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/365 (52%), Positives = 248/365 (67%), Gaps = 40/365 (10%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 63 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 117
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR---------- 148
LA A +LFG EL++ RVLELNASD+RGI VVR K+K FA + V SG R
Sbjct: 118 ILAAARELFGHELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSECIIQEPQLP 176
Query: 149 -----------------------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185
GG PCPP+KI+ILDEADSMT AQ ALRRTME SK
Sbjct: 177 SHCNLAAPTLSFCPLVIIVRQSYGGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKT 236
Query: 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI 245
TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I ++E + + E LS L +
Sbjct: 237 TRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGLSCLVQV 296
Query: 246 SQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV 304
S+GDLR+AIT+LQ A RL G +T K + ++GVIP E V+G+FA C+SG FD V
Sbjct: 297 SEGDLRKAITFLQSATRLTGGKEVTDKVITDIAGVIPVETVDGVFAACQSGSFDKLEAVV 356
Query: 305 NNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
++I EG+ A+ L++QL DVVVE + +SD+Q++ I + LA+VDKCL DGADE+LQL+ +
Sbjct: 357 KDLIDEGHAATQLVNQLHDVVVENDALSDKQKSIITEKLADVDKCLADGADEHLQLISLC 416
Query: 365 SNVIR 369
+ V++
Sbjct: 417 ATVMQ 421
>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 357
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/321 (56%), Positives = 237/321 (73%), Gaps = 3/321 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +L+GP
Sbjct: 34 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
LY+ RVLELNASD+RGI V+R K+KTFA + V +G R G PCPP+KIIILDEADSMT
Sbjct: 94 VLYRQRVLELNASDERGIQVIREKVKTFAQLTV-AGTRPDGKPCPPFKIIILDEADSMTP 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNYISRIIEPL SRC+KFRFKPL +V R+L IC +
Sbjct: 153 PAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNQVQEERLLAICEK 212
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGL 288
E L E++S L +S+GDLR+AIT+LQ AARL I+ + + ++GV+P ++++ L
Sbjct: 213 ENLKYSGESVSALVRVSEGDLRKAITFLQSAARLSVDKEISERTITEIAGVVPHKMIDSL 272
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+C G F+ EV N++ EGY A+ +LSQL + ++E +D+ D+Q++ I + +A V K
Sbjct: 273 LHICFRGTFEKLEVEVRNLVDEGYAATQILSQLHESIIE-KDLGDKQKSAITEKMAVVSK 331
Query: 349 CLVDGADEYLQLLDVASNVIR 369
CL DGADEYLQ+L + S +++
Sbjct: 332 CLSDGADEYLQMLSLCSVIMQ 352
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 178/326 (54%), Positives = 236/326 (72%), Gaps = 3/326 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ +PWVEKYRP+ DVAHQ +V+ L T+ A+ PH+LFYGPPGTGKT+T LA++ +L
Sbjct: 21 AEKPWVEKYRPRTTADVAHQSQVIATLRATISGADMPHLLFYGPPGTGKTSTILALSREL 80
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FGP+L K RVLELNASD+RGI+VVR KIKTFA+ +V G GYPCPP+KIIILDEAD+
Sbjct: 81 FGPQLMKERVLELNASDERGISVVREKIKTFASTSVSKGV--DGYPCPPFKIIILDEADA 138
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQ+ALRRTME YS VTRF ICNYISRIIEPLASRCAKFRFKPLS + + R+ HI
Sbjct: 139 MTAAAQSALRRTMEKYSNVTRFCLICNYISRIIEPLASRCAKFRFKPLSRDTLVGRLQHI 198
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVV 285
++E + E L+ + + GD+R+AIT+LQ A+RL GSS + + ++G IP V+
Sbjct: 199 RDKEDVQCSDEVLARIIDLVDGDMRQAITFLQSASRLCGSSGVEVHHVEEIAGAIPNAVM 258
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
L CR G F+ + V +I+ +G+ A ++ +L +VVE +DISD Q+A I LA+
Sbjct: 259 TDLLDKCRQGSFENLQETVQSILLDGFSADTIVEELLQLVVEADDISDTQKADIAHKLAQ 318
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAV 371
VDK LVDGADE LQ++D+ + ++ +
Sbjct: 319 VDKRLVDGADEELQIMDLCATTMQVL 344
>gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
Length = 364
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/329 (54%), Positives = 239/329 (72%), Gaps = 2/329 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP+ V DVA QEEVV VL +L+ A+ P++L YGPPGTGKT+T LA A +
Sbjct: 34 QPNAPWVEKYRPRTVDDVAFQEEVVAVLKKSLQGADLPNLLLYGPPGTGKTSTILAAARE 93
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG +L K RVLELNASD+RGI VVR K+KTF+ ++ SG R G PCPP+KI+ILDEAD
Sbjct: 94 LFGADLMKQRVLELNASDERGIQVVRDKVKTFSQLS-ASGTRPDGRPCPPFKIVILDEAD 152
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ +LRRTME +K TRF ICNYISRIIEPLASRCAKFRFKPLS +++ R+ H
Sbjct: 153 SMTNPAQASLRRTMEKETKTTRFCLICNYISRIIEPLASRCAKFRFKPLSSDILQKRLRH 212
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-SSITSKDLISVSGVIPPEV 284
I E +N + +A++ L S+GDLR+AITYLQ A RL G +IT KD++ ++GVIP ++
Sbjct: 213 IAEAEKVNAEDKAITALIDTSEGDLRKAITYLQSAHRLKGEDAITEKDILEITGVIPKDM 272
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
V L C S ++ K V ++ AEGY A ++ Q+ D V+ ED++D+Q++ I + +A
Sbjct: 273 VSQLIQTCYSDSYEKLEKSVKDLKAEGYSAEQVILQIHDEVLPREDLTDKQKSVIAEKIA 332
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRAVCN 373
D+ L DG DE+LQL+D+ S +++ C+
Sbjct: 333 VCDQRLADGGDEFLQLMDLTSVMMQQFCH 361
>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 347
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/338 (53%), Positives = 240/338 (71%), Gaps = 5/338 (1%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
RK ++ PWVEKYRP+ V +VA Q+EVV VL +L + + PH+LFYGPPGTGKT+T
Sbjct: 13 RKRETATSTTTPWVEKYRPRTVDEVAFQDEVVAVLKKSLTSNDFPHLLFYGPPGTGKTST 72
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LAIA Q+FGPEL K+R+LELNASD+RGI+VVR K+KT S + + GYPCPP+KI
Sbjct: 73 ILAIARQMFGPELMKTRILELNASDERGISVVREKVKTLHQ----SLRLKWGYPCPPFKI 128
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
IILDEADSMT DAQ+ALRR METYSK TRF ICNY+SRIIEPLASRCAKFRFKPL +
Sbjct: 129 IILDEADSMTADAQSALRRMMETYSKTTRFCLICNYVSRIIEPLASRCAKFRFKPLDAGI 188
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
++ ++ I ++EGL +DA A++ L++ S GD+RRAIT +Q RL GS IT+ D+++ +
Sbjct: 189 LTEKLTAIGDKEGLQIDASAINQLTAASGGDMRRAITLMQCCFRLNGSDPITADDVVAAA 248
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GV+P +++ L+ C SG F+ V I A G+ A +LSQ F+ + D++D Q++
Sbjct: 249 GVVPDDMIRKLWKECASGSFEKVQAAVKEIEASGFSAEQVLSQAFEQFLARPDMTDAQKS 308
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMP 375
I A D+ LVDGADE LQLL V S+ + + +P
Sbjct: 309 AIALAFANSDRQLVDGADESLQLLSVFSSTMETLSVVP 346
>gi|348513512|ref|XP_003444286.1| PREDICTED: replication factor C subunit 4-like [Oreochromis
niloticus]
Length = 357
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/349 (53%), Positives = 248/349 (71%), Gaps = 3/349 (0%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K +T Q++ + + V A + PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 6 KGATVQAARPQKDKAVVGPSAEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 65
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +L+GPELY+ RVLELNASD+RGI VVR K+K FA +
Sbjct: 66 LPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRDKVKNFAQLT 125
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
V +G R G CPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNYISRIIEP
Sbjct: 126 V-AGTRPDGKSCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEP 184
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
L SRC+KFRFKPL+ ++ R+L IC +E L E+++ L +S+GDLR+AIT+LQ AA
Sbjct: 185 LTSRCSKFRFKPLANQIQEERLLEICEKENLKYTKESIAALVRVSEGDLRKAITFLQSAA 244
Query: 262 RL-FGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQ 320
RL IT +I ++GV+P ++++ L +C G F+ V N++ EGY A+ +L+Q
Sbjct: 245 RLNVDKEITDCAVIEIAGVVPDKMIDNLLQICFRGTFEKLEVAVRNMVDEGYAATQILTQ 304
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
L + V+E +D+SD+Q++ I + +A V KCL DGADEYLQLL + S +++
Sbjct: 305 LHECVIE-QDLSDKQKSTITEKMAVVCKCLSDGADEYLQLLSLCSVIMQ 352
>gi|403270485|ref|XP_003927208.1| PREDICTED: uncharacterized protein LOC101046302 [Saimiri
boliviensis boliviensis]
Length = 766
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/315 (58%), Positives = 236/315 (74%), Gaps = 3/315 (0%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115
RPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ R
Sbjct: 448 RPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLR 507
Query: 116 VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
VLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT AQ AL
Sbjct: 508 VLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAAL 566
Query: 176 RRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD 235
RRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +E + +
Sbjct: 567 RRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKIS 626
Query: 236 AEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRS 294
E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++GVIP E + G+FA C+S
Sbjct: 627 DEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKINGVFAACQS 686
Query: 295 GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGA 354
G FD V ++I EG+ A+ L++QL DVVVE ++SD+Q++ I + LAEVDKCL DGA
Sbjct: 687 GSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVEN-NLSDKQKSIITEKLAEVDKCLADGA 745
Query: 355 DEYLQLLDVASNVIR 369
DEYLQL+ + + V++
Sbjct: 746 DEYLQLISLCATVMQ 760
>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
Length = 328
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 195/325 (60%), Positives = 239/325 (73%), Gaps = 3/325 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+QPWVEKYRPK V +VA+QEEVV LT LETAN PH+LFYGPPGTGKT+TALAIA QL
Sbjct: 2 STQPWVEKYRPKNVNEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRV+ELNASD+RGI+VVR K+K+FAA AVG+ YPCPPYK++ILDEADS
Sbjct: 62 YGPELMKSRVMELNASDERGIHVVREKVKSFAAAAVGAPVPG--YPCPPYKLLILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYS+VTRF FICNY+SRIIEPLASRCAKFRFKPL VM+ R+ HI
Sbjct: 120 MTQDAQSALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPTVMAGRIEHI 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
C EG+ L AL LSS+S GDLRRAIT LQ AARL G ++ L+ VSG +P +V+
Sbjct: 180 CEREGVTLAPGALEALSSVSGGDLRRAITTLQSAARLGGGTVDKATLLDVSGRVPADVIT 239
Query: 287 GLFAVCRS-GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
GL C++ G F ++V +++EG+ A +L QL ++ + A + LA
Sbjct: 240 GLCNSCKAPGAFAGLQRQVAGVVSEGFAAQQVLQQLQLELLSDRGTPGLKLADALEALAA 299
Query: 346 VDKCLVDGADEYLQLLDVASNVIRA 370
D L GADE +QLL+V V +A
Sbjct: 300 ADFSLTVGADETIQLLNVVGQVHKA 324
>gi|432853216|ref|XP_004067597.1| PREDICTED: replication factor C subunit 4-like [Oryzias latipes]
Length = 355
Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 179/321 (55%), Positives = 235/321 (73%), Gaps = 3/321 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +L+GP
Sbjct: 32 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELY+ RVLELNASD+RGI VVR K+KTFA + V +G R G CPP+KIIILDEADSMT
Sbjct: 92 ELYRQRVLELNASDERGIQVVREKVKTFAQLTV-AGTRPDGKLCPPFKIIILDEADSMTA 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNYISRIIEPL SRC+KFRFKPL+ + R+L IC +
Sbjct: 151 PAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRIQEERLLEICEK 210
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGL 288
E L E++ L +S+GDLR+AIT+LQ AARL IT + ++ ++GV+P +++EGL
Sbjct: 211 ENLKYTRESIEALVQVSEGDLRKAITFLQCAARLNMDKEITDRAIVEIAGVVPSKMIEGL 270
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
C G F+ V N++ +GY A+ +LSQL + ++E+ D+ D+ ++ I + +A V K
Sbjct: 271 LQTCFKGTFERLEVTVRNLVNDGYAATQILSQLHESIIES-DLKDKDKSIITEKMAVVSK 329
Query: 349 CLVDGADEYLQLLDVASNVIR 369
CL DGADEYLQ+L + S +++
Sbjct: 330 CLSDGADEYLQMLSLCSVIMQ 350
>gi|412990864|emb|CCO18236.1| predicted protein [Bathycoccus prasinos]
Length = 350
Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 179/315 (56%), Positives = 223/315 (70%), Gaps = 2/315 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ +PWV+KYRPK+V DVA+Q EVV L +ET N PHMLFYGPPGTGKTT ALAI Q
Sbjct: 21 KKKEPWVDKYRPKKVSDVAYQTEVVSALEKAMETHNLPHMLFYGPPGTGKTTCALAICKQ 80
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPEL K RVLELNASD+RGI+VVR KIK+FA+ VG G GYPCPPYKI+ILDEAD
Sbjct: 81 LYGPELGKKRVLELNASDERGISVVRGKIKSFASTTVGEGVP--GYPCPPYKILILDEAD 138
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ+ALRR METYS+VTRFF +CNY+S+II+P++SRCAKFRFK L M R+
Sbjct: 139 SMTNDAQSALRRMMETYSRVTRFFILCNYVSKIIDPISSRCAKFRFKSLDGGTMHERINF 198
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I E L L L L +S GD+R+AIT LQ AA LFG +T + V+GVIP E +
Sbjct: 199 IAKGENLQLAEGTLQALEHVSAGDMRKAITLLQSAASLFGPELTGDRIREVAGVIPDEKI 258
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
E L +C +GD + +I+ +G+P +L Q + +++ + DE +A IC L E
Sbjct: 259 EELLQLCVAGDSQKSQALAEDILKDGFPCLQILEQFGYYLADSDLLEDEMKAEICLKLGE 318
Query: 346 VDKCLVDGADEYLQL 360
V+K LVDGADE+LQL
Sbjct: 319 VEKKLVDGADEWLQL 333
>gi|358054157|dbj|GAA99693.1| hypothetical protein E5Q_06396 [Mixia osmundae IAM 14324]
Length = 446
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 189/397 (47%), Positives = 247/397 (62%), Gaps = 41/397 (10%)
Query: 14 NKSPNFTQKFSTTQSSPE---------KSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA 64
++SP T+K S ++P+ KS V+RK + +QPWVEKYRPK + D++
Sbjct: 49 SQSPTATRKPSKKVTAPQGPMNVAIIDKSNGAVERKRPVLAAQAQPWVEKYRPKTIDDIS 108
Query: 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124
QE VRVL +LE AN PHMLFYGPPGTGKT+T LA+A QLFGPE +++RVLELNASD+
Sbjct: 109 AQENTVRVLRKSLENANLPHMLFYGPPGTGKTSTILALAKQLFGPEAFRTRVLELNASDE 168
Query: 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184
RGI VVR KIK FA +A+ G YPCPPYKIIILDEADSMT+DAQ+ALRR ME YSK
Sbjct: 169 RGITVVREKIKNFAKIAISPAV--GDYPCPPYKIIILDEADSMTQDAQSALRRIMENYSK 226
Query: 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244
+TRF ICNY++RIIEP+ SRC+KFRFKPL R+ ++C +E + E++ L
Sbjct: 227 ITRFCLICNYVTRIIEPITSRCSKFRFKPLDTTNTQKRLEYVCQKEEVQCGEESVQALIR 286
Query: 245 ISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSGVIPPEVVEGLF------------- 289
S+GDLRRAITYLQ A+RL+G + + ++GV+P V+ L
Sbjct: 287 CSEGDLRRAITYLQSASRLYGKDKPVDPVSIQEIAGVVPDPVINSLARDLGVDVPESAAE 346
Query: 290 ---------------AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDE 334
++G FD N V ++ +GY A+ LLSQL DV + +S
Sbjct: 347 AKAGEDNDLMQVDPKKPNKTGGFDAVNAAVTRVVRQGYSATQLLSQLHDVCIFNVLLSKR 406
Query: 335 QQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
++ I L E DKCL DGADE+LQ+L+ + AV
Sbjct: 407 AKSAIAMALGEADKCLTDGADEHLQILNTCLRIRAAV 443
>gi|410930528|ref|XP_003978650.1| PREDICTED: replication factor C subunit 4-like [Takifugu rubripes]
Length = 357
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 176/321 (54%), Positives = 233/321 (72%), Gaps = 3/321 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +L+GP
Sbjct: 34 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
LY+ RVLELNASD+RGI V+R K+KTFA + V +G R G CPP+KIIILDEADSMT
Sbjct: 94 VLYRQRVLELNASDERGIQVIREKVKTFAQLTV-AGTRPDGKLCPPFKIIILDEADSMTP 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNYISRIIEPL SRC+KFRFKPL + +R+L IC +
Sbjct: 153 PAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNHIQETRLLDICEK 212
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGL 288
E L E +S L +S+GDLR+AIT+LQ AARL IT + ++GV+P ++++ L
Sbjct: 213 ENLKYSKEGISALVRVSEGDLRKAITFLQSAARLSIAKEITEHTITEIAGVVPNKMIDNL 272
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+C G F+ V N++ EGY A+ +LSQL + ++E +D D+Q++ I + +A V K
Sbjct: 273 LHICFRGTFEKLEVAVRNLVDEGYAATQILSQLHESIIE-KDFGDKQKSAIAEKMAVVSK 331
Query: 349 CLVDGADEYLQLLDVASNVIR 369
C++DGADE+LQ+L + S +++
Sbjct: 332 CMLDGADEFLQMLSLCSVIMQ 352
>gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74853593|sp|Q54MD4.1|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 168/328 (51%), Positives = 228/328 (69%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL R+
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ + + +S GD+R+AITYLQ A R F + I+ + +++G +PP+++
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLI 246
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ L C+ FD V +IIA+GYP S ++SQLFD V+ T+D++ Q++ I +
Sbjct: 247 KQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGN 306
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAVCN 373
VD+ L+DG++E+LQL D++S +++ + N
Sbjct: 307 VDRNLIDGSEEFLQLFDLSSYIMKQLNN 334
>gi|390594192|gb|EIN03605.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 364
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 186/339 (54%), Positives = 233/339 (68%), Gaps = 18/339 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK ++DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLF
Sbjct: 26 NQPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLF 85
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILD 162
GP+ ++SRVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILD
Sbjct: 86 GPDNFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSSDGK--TYPCPPYKIIILD 143
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT+DAQ ALRR ME Y+++TRF +CNY++RIIEPLASRC+KFRFKPL SSR
Sbjct: 144 EADSMTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPTSTSSR 203
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVS 277
+ H+ + E + + L TL S SQGDLRR+ITYLQ A+RL S+ IT D+ ++
Sbjct: 204 LQHVADAERVPVTPAVLDTLVSASQGDLRRSITYLQSASRLSASTDPPIPITPTDIQEIA 263
Query: 278 GVIPPEVVEGLFAV------CRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDI 331
GV+P VV+ V R FD ++V I+ EGY AS LLSQL D+++ +
Sbjct: 264 GVVPDAVVKNFARVLGVDNRARKKGFDNIREKVREIMREGYSASQLLSQLHDLIILHPTL 323
Query: 332 SDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
+ ++R AE DK L DGADE L +L+VA V RA
Sbjct: 324 TARHKSRCAMVFAEADKALCDGADEELWILEVALKVHRA 362
>gi|409046196|gb|EKM55676.1| hypothetical protein PHACADRAFT_144345 [Phanerochaete carnosa
HHB-10118-sp]
Length = 368
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 187/364 (51%), Positives = 241/364 (66%), Gaps = 29/364 (7%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
++ K + P LQ PWVEKYRPK + DV+ QE V VL TL + N PHMLFYGPPGT
Sbjct: 10 KEPAKHTIDPALQ---PWVEKYRPKTIDDVSAQEHTVAVLRRTLTSTNLPHMLFYGPPGT 66
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRR 148
GKT+T LA+A QLFGP+ ++SRVLELNASD+RGI++VR KIK FA A A S +
Sbjct: 67 GKTSTILALARQLFGPDNFRSRVLELNASDERGISIVREKIKDFARQTPRAQAASSDDK- 125
Query: 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208
YPCPPYKIIILDEADSMT+DAQ ALRR ME Y ++TRF +CNY++RIIEPLASRC+K
Sbjct: 126 -TYPCPPYKIIILDEADSMTQDAQAALRRIMENYVRITRFCLVCNYVTRIIEPLASRCSK 184
Query: 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS- 267
FRFKPL S+R+ I + E +++ + TL + S GDLRR+ITYLQ A+RL S+
Sbjct: 185 FRFKPLDNASTSARLAAIASAENIHIPDSVIDTLINTSHGDLRRSITYLQSASRLANSTD 244
Query: 268 ----ITSKDLISVSGVIPPEVVEGLFAVC--------------RSGDFDLANKEVNNIIA 309
ITS D+ ++GV+P E V+ A R FD ++V I+
Sbjct: 245 PPAPITSADIQEIAGVVPDEAVQNFAAALGIEGDTMDVDGTTDRRKGFDQIQRKVKEIVR 304
Query: 310 EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
EGY A+ LL+QL D+++E ++ Q+A+ LAE DK L DGADE LQ+L+VA V +
Sbjct: 305 EGYSAAQLLTQLHDLIIEHPTLTARQKAQSALALAEADKALCDGADEELQILEVALLVNK 364
Query: 370 AVCN 373
AV +
Sbjct: 365 AVTS 368
>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 356
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 177/349 (50%), Positives = 246/349 (70%), Gaps = 11/349 (3%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
ST+++ +K E+ + +S+PWVEKYRPK V DVAHQ+EVV VL +L A+ P
Sbjct: 16 STSKAQLQKQEEAL---------ASKPWVEKYRPKCVDDVAHQDEVVAVLRKSLTGADLP 66
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
++LFYGPPGTGKT+T LA++ +LFG +L K RVLELN+SD+RGINV+R K+K FA +
Sbjct: 67 NLLFYGPPGTGKTSTILALSRELFGFQLMKERVLELNSSDERGINVIREKVKNFAQLTAN 126
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
S R G CPPYKIIILDEADSMT+ AQ ALRRTME SK TRF ICNY++RII P+
Sbjct: 127 S-LREDGKKCPPYKIIILDEADSMTKAAQEALRRTMEKSSKTTRFCLICNYVTRIIPPII 185
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
SRC++FRFK LS E R+ +C +EG+ + +A+S L S+GDLR+A+TYLQ A RL
Sbjct: 186 SRCSQFRFKSLSTEDQKKRLWMVCEKEGVKISQDAMSCLVKCSEGDLRKAMTYLQTAHRL 245
Query: 264 FGS-SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLF 322
G+ I KD++ ++GV+P ++++ L C S D + V+ II+EG+ A+ ++SQL
Sbjct: 246 KGAEGIDEKDVLEITGVVPDDIIKSLIRSCASNSHDKVQESVDYIISEGHSAAKIISQLH 305
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
D V+ ++D Q++ + + +A VDKCL DGADEYLQL+ +A+ + R +
Sbjct: 306 DEVLTLSSLNDLQKSVVMEKIAIVDKCLSDGADEYLQLMALATTLQRQI 354
>gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 358
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 173/334 (51%), Positives = 238/334 (71%), Gaps = 4/334 (1%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+ ++ +PWV KYRP+ V DVAHQ+EVVR L +L+ PH+LFYGPPGTGKT+T LAIA
Sbjct: 23 IQKAPEPWVSKYRPRTVDDVAHQDEVVRALKKSLDGGALPHLLFYGPPGTGKTSTILAIA 82
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
L+GP+L K RVLELNASD+RGI +VRTKIK FA+ V + G P +K+IILDE
Sbjct: 83 MDLYGPDLIKDRVLELNASDERGIEIVRTKIKNFASFTV-NNTTVAGKQVPSFKLIILDE 141
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRRT+E SK TRF +CNYI+RIIEPL+SRCAKFRFKPL E M R+
Sbjct: 142 ADSMTQDAQAALRRTIENTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKPLKSEAMGERL 201
Query: 224 LHICNEEGLNLDAEA-LSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSGVIP 281
+I ++EG+NL E+ L + ++SQGD+R+AIT++Q A R + S SIT ++ +SG +
Sbjct: 202 KYIADQEGVNLANESTLDAIHTVSQGDMRKAITFMQSAHRFYASKSITDANIYDISGSVE 261
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARIC 340
P+ +E C+SGDF V ++A GYPAS ++SQLFD+VV+ ++ Q+ +I
Sbjct: 262 PKTLELFINSCKSGDFYKVRHLVERVMALGYPASQIISQLFDIVVQPSIHFNNIQRTKIA 321
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM 374
+ ++D+ LVDG+DE+LQL D+ + +++ M
Sbjct: 322 IKIGQIDRNLVDGSDEFLQLFDLGAYMMKCFDEM 355
>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
Length = 372
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 173/328 (52%), Positives = 232/328 (70%), Gaps = 13/328 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 35 PWVEKYRPKNLNDVSAQDHTISVLKRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
EL KSRVLELNASD+RGI++VR K+K FA + V S + YPCPPYKIIILDEADSM
Sbjct: 95 ELMKSRVLELNASDERGISIVREKVKNFARITVSTASSTQSSNYPCPPYKIIILDEADSM 154
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFKPL EE R+ I
Sbjct: 155 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEENAKLRLEEIA 214
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-------SSITSKDLISVSGVI 280
E + + + L +S+GDLR+AITYLQ AARL IT K + ++GVI
Sbjct: 215 KMENVEYEDGVIDALIKVSEGDLRKAITYLQSAARLHNPIIRPKPKKITVKSIQEIAGVI 274
Query: 281 PPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQ 336
P + ++ L C + ++ V +I+A+G+ A ++ QL++ +V ++++ EQ+
Sbjct: 275 PDQTIDKLLEACELEKGKSAYSEISRLVQDIVADGWSAGQVVFQLYNKLVFNDEVTAEQK 334
Query: 337 ARICKCLAEVDKCLVDGADEYLQLLDVA 364
I +EVDK LVDG+DE+LQ+LD+A
Sbjct: 335 NDIVLIFSEVDKRLVDGSDEHLQILDLA 362
>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 357
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 168/328 (51%), Positives = 231/328 (70%), Gaps = 3/328 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWV KYRPK V +V+HQ+EVV+ L +LET N PH+LFYGPPGTGKT+T LA+A LFG
Sbjct: 15 EPWVNKYRPKTVDEVSHQDEVVKALKRSLETGNLPHLLFYGPPGTGKTSTILAVAMDLFG 74
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIILDEADSM 167
PELYK RVLELNASD+RGI VVRTKIK FA+ +V G P +K+I+LDEADSM
Sbjct: 75 PELYKDRVLELNASDERGIEVVRTKIKNFASFSVSQNNTLTNGKPAAAFKLIVLDEADSM 134
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E SK TRF +CNYI+RIIEPL+SRCAKFRFK L++ M R+ +I
Sbjct: 135 THDAQAALRRIIEYTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKSLNDTAMIERLRYIA 194
Query: 228 NEEGL-NLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSGVIPPEVV 285
+ E + + E + ++S GDLR+AITYLQ + R +GS +T ++ ++SG +PP+++
Sbjct: 195 SSESMPPVKDEVYQAIHAVSDGDLRKAITYLQSSYRFYGSRELTPDNIYNISGTVPPKLI 254
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
E L C+S +D + ++ +GYPAS +L Q+FD V + SD+Q+A I + +
Sbjct: 255 ETLINTCKSNSYDKLQSNLQQLVTKGYPASQILVQIFDQVTNHKSFSDKQKALIAMKIGD 314
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAVCN 373
VD+ LVDG++E+LQL D S +++ + +
Sbjct: 315 VDRNLVDGSEEFLQLFDTVSFIMKQLSD 342
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/328 (50%), Positives = 226/328 (68%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWV KYRPK + DV++Q++VV L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 8 ERSEPWVSKYRPKTMDDVSYQDDVVSALKKSLSTGNLPHLLFYGPPGTGKTSTILAIAMD 67
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI +VRTKIK FA V G +K+IILDEAD
Sbjct: 68 IYGPELIKQRVLELNASDERGIEIVRTKIKNFAGFTVNKTVSNGNNAGATFKLIILDEAD 127
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL E R+ +
Sbjct: 128 SMTSDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDSEATIERLKY 187
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ + ++S GD+R+AITYLQ A R +G+ +T + ++SG + P ++
Sbjct: 188 ISIQEGIKCTDSVYQAIQTVSDGDMRKAITYLQSAFRFYGNKLTEDTIYNISGTLSPLII 247
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
L C+S F V +II++GYP S ++SQLFD V+ +D+Q++ I +
Sbjct: 248 TSLIKSCKSNSFKDLQSTVQSIISQGYPVSQVVSQLFDFVLSDSKFNDKQKSLISMKIGN 307
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAVCN 373
VD+ L+DG++E+LQLLD++S +++ + N
Sbjct: 308 VDRNLIDGSEEFLQLLDLSSYIMKLLNN 335
>gi|402078075|gb|EJT73424.1| replication factor C subunit 2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 384
Score = 357 bits (915), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 179/351 (50%), Positives = 241/351 (68%), Gaps = 24/351 (6%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+ K P +QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+
Sbjct: 23 QEKQNPEATRAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTS 82
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS---GQRRGGYPCP 154
T LA+A +LFGPEL +SRVLELNASD+RGI++VR K+K FA + + + G R YPCP
Sbjct: 83 TVLALAKELFGPELMRSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYDRSKYPCP 142
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
P+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L
Sbjct: 143 PFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSL 202
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-------- 266
+ +R+ HI +E + L+ A+ L S+GDLR+AIT+LQ AARL G+
Sbjct: 203 DQGNAKARLEHIAEKECVALEPGAVDALIKSSEGDLRKAITFLQSAARLVGAGRASGEGE 262
Query: 267 ---------SITSKDLISVSGVIPPEVVEGLFAVCR---SGD-FDLANKEVNNIIAEGYP 313
++T++ + ++GVIP ++GL R SG + K V N++A+G+
Sbjct: 263 QDTMDVDSKAVTAQIVEDIAGVIPTATIDGLVEAMRPRGSGQTYQSVAKVVENMVADGWS 322
Query: 314 ASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
A+ ++SQLF ++ E+I D Q+ I +E+DK LVDGADE+L +LD+
Sbjct: 323 ATQVVSQLFQAIMYDEEIPDVQKNAISIVFSEIDKRLVDGADEHLSILDLG 373
>gi|403416153|emb|CCM02853.1| predicted protein [Fibroporia radiculosa]
Length = 371
Score = 356 bits (914), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 185/351 (52%), Positives = 235/351 (66%), Gaps = 30/351 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + D++ QE V VL TL + N PHMLFYGPPG+GKT+T LA++ QLFG
Sbjct: 22 QPWVEKYRPKTIDDISAQEHTVAVLRRTLTSTNLPHMLFYGPPGSGKTSTILALSRQLFG 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI +VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 82 PDNFRSRVLELNASDERGIAIVRDKIKNFARQTPRAQAVSSDGK--TYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRFKPL SSR+
Sbjct: 140 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDSTSTSSRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
I EE +++ E +STL + S GDLRR+ITYLQ A+RL S+ IT D+ ++G
Sbjct: 200 SQIALEEHISVTDEVVSTLINTSHGDLRRSITYLQSASRLAMSTNPPTEITPSDIQEIAG 259
Query: 279 VIPPEVVEGLF------------------AVCRSGDFDLANKEVNNIIAEGYPASLLLSQ 320
V+P V+ A R+ DFD K+V II +GY A+ +LSQ
Sbjct: 260 VVPDTVINDFAATLGVEVLVPNAMDVDIPATSRAKDFDGVKKKVKEIIRQGYSATQILSQ 319
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
L D+V+E +S Q++R AE DK L DGADE L +L+V V +A+
Sbjct: 320 LHDLVIEHPTLSARQKSRCALVFAEADKALCDGADEELWILEVGLCVHKAL 370
>gi|393220481|gb|EJD05967.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 370
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 184/350 (52%), Positives = 235/350 (67%), Gaps = 29/350 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE +V VL TL + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 22 QPWVEKYRPKTIDDVSSQEHIVAVLQKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +K+RVLELNASD+RGI +VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 82 PDNFKNRVLELNASDERGITIVREKIKNFARQTPRAQAVASDGK--TYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF+PL + R+
Sbjct: 140 ADSMTHDAQSALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFRPLDDSATKLRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
HI + E + + E +STL ++S GDLRR+ITYLQ A+RL S+ ITS+D+ ++G
Sbjct: 200 QHIADAERVPVIPEVVSTLINVSGGDLRRSITYLQSASRLSSSTDPPTEITSQDIQEIAG 259
Query: 279 VIPPEVVEGLFAVC-----------------RSGDFDLANKEVNNIIAEGYPASLLLSQL 321
V+P VV V R F+ +V +I EGY A LLSQL
Sbjct: 260 VVPDRVVNSFGRVLGVDISDGDEMDVDDAKKRRKGFEAVKFKVKGLIREGYSAFQLLSQL 319
Query: 322 FDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
D+++ ++ Q+AR AE DK L DGADE LQ+L+VA V +A+
Sbjct: 320 HDLIILHPTLTARQKARCAMVFAEADKALCDGADEELQVLEVALQVHQAL 369
>gi|392567387|gb|EIW60562.1| replication factor C [Trametes versicolor FP-101664 SS1]
Length = 379
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 233/355 (65%), Gaps = 34/355 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 24 QPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 83
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
PE ++SRVLELNASD+RGI++VR KIK FA A AV + YPCPPYKIIILDE
Sbjct: 84 PENFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSADG--TVYPCPPYKIIILDE 141
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR ME Y+++TRF +CNY++RIIEPLASRC+KFRFKPL S+R+
Sbjct: 142 ADSMTQDAQAALRRIMELYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPASTSARI 201
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278
+ + E + + E + L S SQGDLRRAITYLQ A+RL +SIT++D+ ++G
Sbjct: 202 AQVASAENVPVTPETVDALISTSQGDLRRAITYLQSASRLALASTPPTSITARDVQEIAG 261
Query: 279 VIPPEVVEGLFAVC----------------------RSGDFDLANKEVNNIIAEGYPASL 316
V+P V+EG A ++ FD +V II EGY AS
Sbjct: 262 VVPDAVIEGFAAALGVERMGGDGMDVDLEVDEKGEFKAKGFDGVRAKVREIIREGYSASQ 321
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
++SQL D V+ +S Q++R AE DK L DGADE L +L+V + RA+
Sbjct: 322 IISQLHDYVIMHPTLSARQKSRAALVFAEADKALCDGADEELWILEVGLRIHRAM 376
>gi|427779307|gb|JAA55105.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 392
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 172/326 (52%), Positives = 232/326 (71%), Gaps = 3/326 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V DVAHQ+EVV VL +L+ A+ P++LFYGPPGTGKT+T LA+A +LFG
Sbjct: 67 PWVEKYRPKTVDDVAHQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALARELFG- 125
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++YKSR+LELNASD+RGI VVR KIKTF+ + SG G PCPPYKI+ILDEADSMT
Sbjct: 126 DMYKSRILELNASDERGIQVVREKIKTFSQLT-ASGTGPDGKPCPPYKIVILDEADSMTA 184
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +K TRF ICNYISRII+PL SRC+KFRFKPL ++++ R+ +IC
Sbjct: 185 SAQAALRRTMEKETKTTRFCLICNYISRIIDPLTSRCSKFRFKPLPKDILLERLRNICTA 244
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGL 288
E + D + L L +GD+RRAIT Q +RL +TS+D+ V+G+IP + V+GL
Sbjct: 245 EAVQCDDQVLDFLMDACEGDMRRAITLFQSVSRLKCNEQVTSEDVAEVAGIIPNQWVDGL 304
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
C S ++ + V +++ EG+ AS L SQL D +V + D+Q++ I + LA D
Sbjct: 305 LTSCASNSYEKLSATVEDLVLEGFAASQLFSQLHDAIVLSNKYDDKQKSAIAEKLAICDH 364
Query: 349 CLVDGADEYLQLLDVASNVIRAVCNM 374
L++GADEYLQ++D+ ++ +C++
Sbjct: 365 RLLEGADEYLQIMDLCVTIMNQLCSV 390
>gi|72072160|ref|XP_787339.1| PREDICTED: replication factor C subunit 4-like isoform 2
[Strongylocentrotus purpuratus]
gi|390359382|ref|XP_003729467.1| PREDICTED: replication factor C subunit 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 355
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 170/330 (51%), Positives = 237/330 (71%), Gaps = 2/330 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP+ V +VA+Q+EVV VL +L+ A+ P+MLFYGPPGTGKT+T LA + +
Sbjct: 25 QRQVPWVEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTSTILAASRE 84
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG ++Y+SRVLELNASD+RGI VVR K+K FA A G G R G PCPP+KIIILDEAD
Sbjct: 85 LFGTDMYRSRVLELNASDERGIQVVRDKVKKFAQTAAG-GIRPDGKPCPPFKIIILDEAD 143
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRTME SK T+F ICNYISRIIEPL SRC+KFRFKPLS+ + ++
Sbjct: 144 SMTYDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLRE 203
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEV 284
IC E +N EAL + +S+GD+R++IT+LQ RL I +D+ ++GVIP ++
Sbjct: 204 ICEAENINCGEEALEAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAGVIPDKM 263
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
++ L C G ++ +++V ++ GY AS +++Q+FD++V+ +++D+Q++ I + LA
Sbjct: 264 IDDLIQACYGGSYEKLDEKVQELLQGGYSASQVVNQIFDIIVDRGELTDKQKSAIAERLA 323
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRAVCNM 374
+DK L DGADE LQ++D+ + + C +
Sbjct: 324 VIDKRLCDGADEGLQIMDLFTLTMDQFCTV 353
>gi|346321024|gb|EGX90624.1| activator 1 41 kDa subunit [Cordyceps militaris CM01]
Length = 382
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 176/343 (51%), Positives = 235/343 (68%), Gaps = 24/343 (6%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + D+A QE V VL TL+ AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKSLDDIAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADS 166
PE+ KSRVLELNASD+RGI++VR K+K FA + + + R YPCPP+KIIILDEADS
Sbjct: 93 PEMMKSRVLELNASDERGISIVRDKVKNFARMQLTNPPAGYRDKYPCPPFKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTME YSK+TRF ICNY++RII+PLASRC+KFRFK L + R+ I
Sbjct: 153 MTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAKKRLEEI 212
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS------------------SI 268
E + +D A+ L S+GDLR+A+T+LQ AARL G+ +I
Sbjct: 213 ATAESVPVDDGAIDALIRCSEGDLRKAVTFLQSAARLVGAGAQPKDSDGDDDMEVDKKAI 272
Query: 269 TSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
T K + ++GVIP + ++ L A R +G + +K V +++A+G+ A ++SQL+ V
Sbjct: 273 TVKIIEDIAGVIPSKTIDELVAALRPRGSNGSYAGVSKVVEDMVADGWSAGQVVSQLYQV 332
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
V E I D Q+ +I +EVDK L+DGADE+L +LD++ +
Sbjct: 333 VTFDETIPDVQKNKIVMVFSEVDKRLLDGADEHLSILDLSMRI 375
>gi|74150977|dbj|BAE27622.1| unnamed protein product [Mus musculus]
Length = 370
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 225/307 (73%), Gaps = 7/307 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VS 277
R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I+ ++
Sbjct: 207 QQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP ++G+F C SG FD V N+I EG+ A+ L++QL D ++E E++SD+ ++
Sbjct: 267 GVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKS 326
Query: 338 RICKCLA 344
I + LA
Sbjct: 327 IITEKLA 333
>gi|343113485|gb|AEL87701.1| replication factor C 4 [Strongylocentrotus nudus]
Length = 355
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 170/330 (51%), Positives = 235/330 (71%), Gaps = 2/330 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP+ V +VA+Q+EVV VL +L+ A+ P+MLFYGPPGTGKT+T LA + +
Sbjct: 25 QRQVPWVEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTSTILAASRE 84
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG ++Y+SRVLELNASD+RGI VVR K+K FA A G G R G P PP+KIIILDEAD
Sbjct: 85 LFGADMYRSRVLELNASDERGIQVVRDKVKKFAQTAAG-GIRPDGKPRPPFKIIILDEAD 143
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRTME SK T+F ICNYISRIIEPL SRC+KFRFKPLS+ + ++
Sbjct: 144 SMTNDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLRE 203
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEV 284
IC E +N EAL + +S+GD+R++IT+LQ RL I +D+ ++GVIP +
Sbjct: 204 ICEVENINCGEEALDAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAGVIPDRI 263
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
++ L C G ++ +++V ++ +GY AS +++Q+FD++VE +++D Q++ I + LA
Sbjct: 264 IDDLIQSCYGGSYEKLDEKVQELLQDGYSASQVVNQIFDIIVERGELTDTQKSAIAERLA 323
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRAVCNM 374
+DK L DGADE LQ++D+ + + C +
Sbjct: 324 VIDKRLCDGADEGLQIMDLFTLTMDQFCTV 353
>gi|389749254|gb|EIM90431.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 379
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 181/356 (50%), Positives = 238/356 (66%), Gaps = 35/356 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE +V VL TL + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 25 QPWVEKYRPKTIEDVSAQEHIVAVLEKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI +VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFRSRVLELNASDERGIAIVREKIKNFARQTPRAQAVSSDGK--AYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+ +TRF +CNY++RIIEPLASRC+KFRFKPL + ++R+
Sbjct: 143 ADSMTQDAQAALRRIMETYAHITRFCLVCNYVTRIIEPLASRCSKFRFKPLDDSSSTNRL 202
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
HI E L + + S L S S GDLRRAITYLQ AARL +S I+ +D+ ++G
Sbjct: 203 EHIALSEQLRVKPDVFSALISTSGGDLRRAITYLQSAARLSAASETETTISPRDIQEIAG 262
Query: 279 VIPPEVVE------GLFAV-----------------CRSGDFDLANKEVNNIIAEGYPAS 315
V+P V+ G+ V + FDL +V ++ EGY AS
Sbjct: 263 VVPDAVINNFARSLGIEVVNTEEGEEMDVDMDADQSTKLKGFDLIRNKVRAMMREGYSAS 322
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+L+QL D+++ ++++ Q+++ +AE DK L DG+DE L +L+VA V +AV
Sbjct: 323 QVLTQLHDIIILHQNLTARQKSKCALVMAEADKALCDGSDEELWVLEVALKVNKAV 378
>gi|426217728|ref|XP_004003104.1| PREDICTED: replication factor C subunit 4 isoform 2 [Ovis aries]
Length = 337
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 178/332 (53%), Positives = 232/332 (69%), Gaps = 34/332 (10%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
G ++I EG+ A+ L++QL DVVVE +++SD+Q++
Sbjct: 267 G---------------------------DLINEGHAATQLVNQLHDVVVENDNLSDKQKS 299
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 300 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 331
>gi|114052583|ref|NP_001039359.1| replication factor C subunit 4 [Bos taurus]
gi|88954368|gb|AAI14042.1| Replication factor C (activator 1) 4, 37kDa [Bos taurus]
gi|296491286|tpg|DAA33349.1| TPA: replication factor C 4 [Bos taurus]
Length = 337
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 178/332 (53%), Positives = 232/332 (69%), Gaps = 34/332 (10%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
G ++I EG+ A+ L++QL DVVVE +++SD+Q++
Sbjct: 267 G---------------------------DLINEGHAATQLVNQLHDVVVENDNLSDKQKS 299
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 300 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 331
>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 359
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 177/336 (52%), Positives = 231/336 (68%), Gaps = 15/336 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 25 QPWVEKYRPKTIDEVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +++RVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQAVASDGK--SYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF PL + SR+
Sbjct: 143 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSKSSFSRL 202
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT-----SKDLISVSG 278
+I E ++ + ++ L S S GDLRRAITYLQ A+RL S+I D+ ++G
Sbjct: 203 SYIATAEHIDTNPAVINALISTSSGDLRRAITYLQSASRLSSSTIPPTPILPSDIQEIAG 262
Query: 279 VIPPEVV---EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQ 335
V+P V+ G+ V + F+ NKEV +++ EGY A+ +LSQL DVV+ ++ Q
Sbjct: 263 VVPDAVINKFSGILGVEKKTSFESINKEVKSLMREGYSATQILSQLHDVVILHPTLTGRQ 322
Query: 336 QARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
++ AE DK L DGADE L +L+ + +AV
Sbjct: 323 KSLCALVFAEADKALCDGADEELWILEAGLRIHKAV 358
>gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C)
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 387
Score = 350 bits (897), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 180/347 (51%), Positives = 233/347 (67%), Gaps = 28/347 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 34 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA V + + YPCPP+KIIILDE
Sbjct: 94 PALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDE 153
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFKPL R+
Sbjct: 154 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRL 213
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK------------ 271
I E L+L+ + L S S GDLRRAITYLQ AARL G++ +K
Sbjct: 214 AQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARLVGAAKAAKDGDEDEEMKDQG 273
Query: 272 -DLISVS------GVIPPEVVEGLFAVC---RSGD-FDLANKEVNNIIAEGYPASLLLSQ 320
D+I+VS GV+P V++GL R G ++ +K V I+A+G+ A+ +L Q
Sbjct: 274 SDMITVSTIEEIAGVVPESVLDGLIQSLQPKRMGSPYEAVSKVVTEIVADGWSATQILLQ 333
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
L+ +V + I D Q+ +I +E+DK LVDGADE+L +LDVA +
Sbjct: 334 LYRRMVYNDAIPDIQKNKIVLVFSEMDKRLVDGADEHLSILDVALKI 380
>gi|346471367|gb|AEO35528.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/329 (53%), Positives = 233/329 (70%), Gaps = 9/329 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V DVAHQ+EVV VL +L+ A+ P++LFYGPPGTGKT+T LA+A +LFG
Sbjct: 33 PWVEKYRPKTVDDVAHQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALARELFG- 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEADS 166
++YKSR+LELNASD+RGI VVR KIKTF+ A AVG G PCPP+KI+ILDEADS
Sbjct: 92 DMYKSRILELNASDERGIQVVREKIKTFSQLTAHAVGPD----GKPCPPFKIVILDEADS 147
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQ ALRRTME +K TRF ICNYISRII+PL SRC+KFRFKPL +EV+ R+ I
Sbjct: 148 MTASAQAALRRTMEKETKSTRFCLICNYISRIIDPLTSRCSKFRFKPLPKEVLLERLRSI 207
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVV 285
C EG+ + E L L +GD+RRAIT Q +RL +TS D+ V+G+I + +
Sbjct: 208 CTAEGVQCEDEVLDFLMDACEGDMRRAITLFQSVSRLKCDEPVTSHDVAEVAGIISKKWI 267
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ L A C S ++ + V +++ EG+ AS L SQL D +V + + +D+Q++ I + LA
Sbjct: 268 DDLLASCASNSYEKLSATVEDLVLEGFAASQLFSQLHDTIVLSTNYNDKQKSAITEKLAI 327
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAVCNM 374
D L++GADEYLQ++D+ ++ VCN+
Sbjct: 328 CDHRLLEGADEYLQIMDLCITIMNQVCNV 356
>gi|400601260|gb|EJP68903.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 382
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 233/343 (67%), Gaps = 24/343 (6%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKSLDDVAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADS 166
PE+ KSRVLELNASD+RGI++VR K+K FA + + + R YPCPP+KIIILDEADS
Sbjct: 93 PEMMKSRVLELNASDERGISIVREKVKNFARMQLTNPPAGYREKYPCPPFKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTME YSK+TRF ICNY++RII+PLASRC+KFRFK L + R+ I
Sbjct: 153 MTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAMKRLEEI 212
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS------------------SI 268
E + L A+ L S+GDLR+A+T+LQ AARL G+ ++
Sbjct: 213 AAAESVPLGDGAIDALVRCSEGDLRKAVTFLQSAARLIGAGAQVKDGDGDEDMDVDKKAV 272
Query: 269 TSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
T K + ++GVIP ++ L A R +G + +K V +++A+G+ A ++SQL+ V
Sbjct: 273 TVKIIEDIAGVIPGATIDELVAALRPRGSNGSYSSVSKVVEDMVADGWSAGQIVSQLYQV 332
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ E I D Q+ +I +EVDK L+DGADE+L +LD++ +
Sbjct: 333 ITFDETIPDVQKNKIVMVFSEVDKRLLDGADEHLSILDLSMRI 375
>gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa]
Length = 366
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 178/348 (51%), Positives = 234/348 (67%), Gaps = 17/348 (4%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-- 264
+KFRFK L + R+ I EG+ L+ A+ L S+GDLR+AITYLQ AARL
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLMEV 251
Query: 265 -GSSITSKDLISVSGVIPPEVVEGLFAVCRS----GDFDLANKEVNNIIAEGYPASLLLS 319
+T K + ++GVIP + ++ L R + K V ++A+G+ A ++
Sbjct: 252 DAKLVTVKVVEDIAGVIPDDTIQRLLEAMRPRAGVDTYPAVAKVVEEMVADGWSAGQTMT 311
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
QL+ VV E I D Q+ +I +EVDK LVDGADE+L +LD+A +
Sbjct: 312 QLYQAVVFDEMIPDVQKNKIVMVFSEVDKRLVDGADEHLSVLDLALRI 359
>gi|367020560|ref|XP_003659565.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
gi|347006832|gb|AEO54320.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
Length = 384
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 182/368 (49%), Positives = 243/368 (66%), Gaps = 33/368 (8%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T +S EK +E R +QPWVEKYRPK++ DV Q+ + VL TL+ +N PH
Sbjct: 18 TASTSTEKQTNENAR--------AQPWVEKYRPKKLSDVTAQDHTITVLERTLQASNLPH 69
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 70 MLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTN 129
Query: 145 G--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PL
Sbjct: 130 PPPGYKSRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 189
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
ASRC+KFRFK L + R+ I EG+ +D A+ L S GDLR+AIT+LQ AAR
Sbjct: 190 ASRCSKFRFKSLDQGNARRRLEDIAKLEGVPIDDGAVDALIKCSDGDLRKAITFLQSAAR 249
Query: 263 LFGSS-------------------ITSKDLISVSGVIPPEVVEGLFAVCR---SGD-FDL 299
L G+S +T+K + ++GVIP + ++ L R +G+ +
Sbjct: 250 LVGASAATAGGRDEGDKMDVDKKTVTAKVVEDIAGVIPDDTIQKLVQAMRPRTAGETYQA 309
Query: 300 ANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQ 359
K V +++A+G+ A LSQL +V E I+D Q+ +I +E+DK LVDGADE+L
Sbjct: 310 IAKVVEDMVADGWSAGQTLSQLHQAIVYDETITDAQKNKIVLVFSEIDKRLVDGADEHLS 369
Query: 360 LLDVASNV 367
+LD+A V
Sbjct: 370 ILDLALRV 377
>gi|425784288|gb|EKV22076.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum Pd1]
Length = 780
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 172/348 (49%), Positives = 232/348 (66%), Gaps = 32/348 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 423 QPWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 482
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-----GQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA + R YPCPP+KIIILDE
Sbjct: 483 PALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDE 542
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTMETYS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 543 ADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRI 602
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
+I +EGL L+ + TL +GDLRRAITYLQ AARL G++
Sbjct: 603 SNIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSAARLVGATKPPTGKDADDDAVMTD 662
Query: 268 -------ITSKDLISVSGVIPPEVVEGLFAVC--RSGD--FDLANKEVNNIIAEGYPASL 316
IT + + ++GV+P E+++ L +SG ++ + + +++A+G+ A+
Sbjct: 663 AGSNSSVITVRTIEEIAGVLPEEILDSLVEAMQPKSGGSVYEAISGVITDLVADGWSATQ 722
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
L+ QL+ VV E I D Q+ +I +E+DK LVDG+DE+L +LD++
Sbjct: 723 LVGQLYRRVVFNEAIPDIQKNKIVMLFSEMDKRLVDGSDEHLSMLDLS 770
>gi|425778430|gb|EKV16557.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum PHI26]
Length = 780
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 172/348 (49%), Positives = 232/348 (66%), Gaps = 32/348 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 423 QPWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 482
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-----GQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA + R YPCPP+KIIILDE
Sbjct: 483 PALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDE 542
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTMETYS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 543 ADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRI 602
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
+I +EGL L+ + TL +GDLRRAITYLQ AARL G++
Sbjct: 603 SNIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSAARLVGATKPPTGKDADDDAVMTD 662
Query: 268 -------ITSKDLISVSGVIPPEVVEGLFAVC--RSGD--FDLANKEVNNIIAEGYPASL 316
IT + + ++GV+P E+++ L +SG ++ + + +++A+G+ A+
Sbjct: 663 AGSNSSVITVRTIEEIAGVLPEEILDSLVEAMQPKSGGSVYEAISGVITDLVADGWSATQ 722
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
L+ QL+ VV E I D Q+ +I +E+DK LVDG+DE+L +LD++
Sbjct: 723 LVGQLYRRVVFNEAIPDIQKNKIVMLFSEMDKRLVDGSDEHLSMLDLS 770
>gi|156057403|ref|XP_001594625.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980]
gi|154702218|gb|EDO01957.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 412
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 180/349 (51%), Positives = 241/349 (69%), Gaps = 30/349 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 93 PELIKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYS++TRF ICNY++RII+PLASRC+KFRFK L + RV I
Sbjct: 153 MTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVKEI 212
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD-------------- 272
++EG+ L+ A+ L S+GDLR+AITYLQ AARL G +I+ KD
Sbjct: 213 ADKEGVKLEEGAVEALIRCSEGDLRKAITYLQSAARLVG-AISLKDGEGDNEDKMDVDAK 271
Query: 273 LISVS------GVIPPEVVEGLFAV----CRSGDFDLANKEVNNIIAEGYPASLLLSQLF 322
+++VS GVIP +E L R +D +K V +++A+G+ + ++SQL+
Sbjct: 272 MVTVSSVEDIAGVIPDNTIEKLVKAMQPKSRGVVYDAVSKVVVDMVADGWSGTQVVSQLY 331
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA---SNVI 368
+V +E I+D + +I +E DK LVDGADE+L +LD++ SN++
Sbjct: 332 QTIVNSEFIADTHKNKIVALFSEADKRLVDGADEHLTILDLSLRISNIL 380
>gi|336272567|ref|XP_003351040.1| hypothetical protein SMAC_04344 [Sordaria macrospora k-hell]
gi|380090807|emb|CCC04977.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 387
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 183/370 (49%), Positives = 241/370 (65%), Gaps = 38/370 (10%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
S+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ N PHMLF
Sbjct: 19 SNPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQATNLPHMLF 70
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SG 145
YGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 71 YGPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSA 130
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASR
Sbjct: 131 AYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASR 190
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C+KFRFK L + R+ I EG+ L+ A+ L S+GDLR+AITYLQ AARL G
Sbjct: 191 CSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLVG 250
Query: 266 S-SITSKD-----------------LISV------SGVIPPEVVEGLFAVCR----SGDF 297
+ + T+KD L++V +GVIP + ++ L R + +
Sbjct: 251 AVAATAKDGEQKEGEGGDEMEVDAKLVTVKVVEDIAGVIPDDTIQRLLKAMRPRAGADTY 310
Query: 298 DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEY 357
K V ++A+G+ A ++QL+ VV E I D Q+ +I +EVDK LVDGADE+
Sbjct: 311 RAVAKVVEEMVADGWSAGQTMTQLYQAVVYDEMIPDVQKNKIVMVFSEVDKRLVDGADEH 370
Query: 358 LQLLDVASNV 367
L +LD++ +
Sbjct: 371 LSILDLSLRI 380
>gi|213403013|ref|XP_002172279.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
gi|212000326|gb|EEB05986.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
Length = 340
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 166/329 (50%), Positives = 230/329 (69%), Gaps = 3/329 (0%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A + + + PWVE YRPK + +V+ Q+ ++VL T+ + N PHMLFYG PGTGKT+T LA
Sbjct: 13 AHLTKKAVPWVEHYRPKSLDEVSSQDMTIQVLKKTMMSNNLPHMLFYGSPGTGKTSTILA 72
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+A +LFGP+L KSRVLELNASD+RGI+++R K+K FA +AV + GYPCPP+KI+IL
Sbjct: 73 LARELFGPQLVKSRVLELNASDERGISIIREKVKNFARIAVNNTV--NGYPCPPFKIVIL 130
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ ALRRTME +++TRF +CNY++RII+PLASRC+K+RFKPL + ++
Sbjct: 131 DEADSMTQDAQAALRRTMEATARITRFCLVCNYVTRIIDPLASRCSKYRFKPLDAQDIAK 190
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVI 280
R+ I ++ + L+ + L S+S GD+R+AIT+LQ AA L G+ +T +I +SG I
Sbjct: 191 RLEFIAADQTVALEPGVIDALVSVSGGDMRKAITFLQSAATLHQGTPVTVNTVIEISGRI 250
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +V++ L V +S D + A G+ LLLSQL D V+ E I + +I
Sbjct: 251 PDDVIQELLDVSKSKDISKIESVAETVTANGFSTGLLLSQLHDKVMADESIPSNSKHKIL 310
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIR 369
++EVDKCL DGADEYLQLLD+ + R
Sbjct: 311 LKMSEVDKCLTDGADEYLQLLDMLVAISR 339
>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
Length = 383
Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 175/339 (51%), Positives = 233/339 (68%), Gaps = 22/339 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 32 AQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELY 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + + YPCPP+KIIILDEAD
Sbjct: 92 GPEMIKSRVLELNASDERGISIVREKVKDFARMQLTNPTNEYKKRYPCPPFKIIILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 152 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLGD 211
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----------------IT 269
I EG+ L+ A+ L S+GDLR+AITYLQ AARL G+ +T
Sbjct: 212 IAENEGVQLEDGAVDALIKCSEGDLRKAITYLQSAARLVGAGDKDTSGDDAMDVDKRPVT 271
Query: 270 SKDLISVSGVIPPEVVEGLFAVCR-SGDFD---LANKEVNNIIAEGYPASLLLSQLFDVV 325
K + ++GVIP ++ L + R G D K V +++A+G+ A +++QL+ +
Sbjct: 272 VKIVEDIAGVIPENTIDELVSAIRPQGTVDTYQTVAKVVEDMVADGWSAGQVVTQLYQSI 331
Query: 326 VETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
V E I D Q+ +I +EVDK LVDGADE+L +LD+A
Sbjct: 332 VFDETIPDVQKNKIVLIFSEVDKRLVDGADEHLTILDLA 370
>gi|350635059|gb|EHA23421.1| hypothetical protein ASPNIDRAFT_47138 [Aspergillus niger ATCC 1015]
Length = 758
Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 173/348 (49%), Positives = 229/348 (65%), Gaps = 29/348 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 404 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 463
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRR-GGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + G G+ YPCPP+KIIILDE
Sbjct: 464 PSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDE 523
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 524 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERL 583
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
HI E L L+ + L + S+GD+RRAITY+Q AA+L G+
Sbjct: 584 EHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGAGRAGKKDEDEDEEMTDQ 643
Query: 268 ----ITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLLLS 319
IT + + ++GV+P V++ L + ++ K V +IIA+G+ A+ LL
Sbjct: 644 ESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEAVAKVVTDIIADGWSATQLLL 703
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
QL+ VV + I D Q+ +I +++D+ LVDGADE+L +LDVA +
Sbjct: 704 QLYRRVVFNDAIPDIQKNKIVMVFSDMDRRLVDGADEHLSILDVALKI 751
>gi|241829143|ref|XP_002414742.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
gi|215508954|gb|EEC18407.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
Length = 363
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 177/371 (47%), Positives = 245/371 (66%), Gaps = 15/371 (4%)
Query: 8 IHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQE 67
+H K+ +PN +P E + K P + PWVEKYRPK V DVAHQ+
Sbjct: 1 MHAFLKSANPNL---------APPLKERGKEAKQKPKREVHVPWVEKYRPKTVDDVAHQD 51
Query: 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127
EVV VL +L A+ P++LFYGPPGTGKT+T LA++ +LFG ++YKSR+LELNASD+RGI
Sbjct: 52 EVVSVLKKSLLGADLPNLLFYGPPGTGKTSTILALSRELFG-DMYKSRILELNASDERGI 110
Query: 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187
VVR KIK F+ + + R G PCPP+KI+ILDEADSMT AQ ALRRTME +K TR
Sbjct: 111 QVVREKIKNFSQLT-ANATRPDGRPCPPFKIVILDEADSMTPSAQAALRRTMEKQTKTTR 169
Query: 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL---STLSS 244
F ICNYISRIIEPL SRC+KFRFKPL ++++ R+ IC E + D EA+ L S
Sbjct: 170 FCLICNYISRIIEPLTSRCSKFRFKPLPKDILLERLQKICTAENVQCDDEAILFFFFLKS 229
Query: 245 ISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKE 303
GD+RRAIT Q +RL G + ++D+ V+ +IP V+ + C S ++ ++
Sbjct: 230 ACLGDMRRAITLFQSVSRLKLGEPVLTEDVAEVACIIPKSWVDRVLQTCASNSYEKLDQT 289
Query: 304 VNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
+ +++ EGYPAS L +QL DV++ + D D+Q++ I + LA D L++GADEYLQ++D+
Sbjct: 290 IQDLVLEGYPASQLFNQLHDVLIASADYDDKQKSVIMEKLAICDHRLLEGADEYLQMMDL 349
Query: 364 ASNVIRAVCNM 374
++ VC++
Sbjct: 350 CVTIMNQVCSV 360
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/328 (51%), Positives = 226/328 (68%), Gaps = 6/328 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWVEKYRP+++ DVA Q + VL TLE+AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 19 EESKPWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKE 78
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGP L KSRVLELNASD+RGI++VR K+K FA + V + + YPCPPYKIIILDE
Sbjct: 79 LFGPSLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDE 138
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFKPL R+
Sbjct: 139 ADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRL 198
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSITSKDLISVSGV 279
I +E L+ +A AL + I++GDLR+AIT LQ AA++ IT+ + ++GV
Sbjct: 199 EQIAQQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITTAQVEELAGV 258
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P ++++GL S D K VN ++ G+ S ++SQL D E ++ E++ +I
Sbjct: 259 VPDDIIKGLVEKIESKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKI 318
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNV 367
L + D L +G DE++QLLD+A +
Sbjct: 319 FLLLFKTDSRLSNGTDEHIQLLDLAMKI 346
>gi|429856209|gb|ELA31133.1| activator 1 41 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 381
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/339 (51%), Positives = 234/339 (69%), Gaps = 22/339 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 31 AQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELY 90
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + + YP PP+KIIILDEAD
Sbjct: 91 GPEMMKSRVLELNASDERGISIVREKVKDFARMQLTNPTAEYKKRYPVPPFKIIILDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 151 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLED 210
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----------------IT 269
I EG+ L+ A+ L S+GDLR+AIT+LQ AARL G+ +T
Sbjct: 211 IAQNEGVQLEDGAVDALIKCSEGDLRKAITFLQSAARLVGAGNEEKSADDAMDVDKKPVT 270
Query: 270 SKDLISVSGVIPPEVVEGLFAVC---RSGD-FDLANKEVNNIIAEGYPASLLLSQLFDVV 325
K + ++GVIP ++ L + R+GD + K V +++A+G+ A ++SQL+ +
Sbjct: 271 VKTVEDIAGVIPENTIDKLVSAIRPQRAGDTYQNVAKVVEDMVADGWSAGQVVSQLYQAI 330
Query: 326 VETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
V E I D Q+ +I +EVDK LVDGADE+L +LD++
Sbjct: 331 VFDETIPDVQKNKIVLIFSEVDKRLVDGADEHLSILDLS 369
>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870557|gb|EIT79737.1| replication factor C, subunit RFC4 [Aspergillus oryzae 3.042]
Length = 391
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/349 (50%), Positives = 229/349 (65%), Gaps = 30/349 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRG---GYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA V + +G + YPCPP+KIIILDE
Sbjct: 96 PALYRSRILELNASDERGIAIVREKVKDFARVQLSHPTGVDKSYFEKYPCPPFKIIILDE 155
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTMETYSK+TRF +CNY++RIIEPLASRC+KFRFKPL R+
Sbjct: 156 ADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRL 215
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
I E L L+ + L S GDLRRAITY+Q ARL G++
Sbjct: 216 AQIAKLENLELEDGVVDKLIQCSDGDLRRAITYMQSGARLVGATGNSGRQDGGEDAEMTD 275
Query: 268 -----ITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLLL 318
IT + + ++GVIP V++ L + ++ +K +I+A+G+ A+ LL
Sbjct: 276 ASSQVITVRMVEEIAGVIPESVLDQLVQAMQPKKIGSSYEAVSKVTTDIVADGWSATQLL 335
Query: 319 SQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+QL+ VV + I D Q+ +I +E+DK LVDGADE+L +LDVA +
Sbjct: 336 AQLYRRVVYNDAIPDIQKNKIVMVFSEMDKRLVDGADEHLSILDVALKI 384
>gi|323507744|emb|CBQ67615.1| probable RFC2-DNA replication factor C, 41 KD subunit [Sporisorium
reilianum SRZ2]
Length = 385
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 183/366 (50%), Positives = 239/366 (65%), Gaps = 33/366 (9%)
Query: 19 FTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE 78
F Q+ S ++ + ++ K K+A + +PWVEKYRPK + DVA QE V VL TL
Sbjct: 2 FLQQASKAHNAGQAAQ---KEKLAKEKAAMRPWVEKYRPKTIDDVAAQEHTVAVLKKTLM 58
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ N PHMLFYGPPGTGKT+T LA+A QLFGPEL K+RVLELNASD+RGI+VVR KIK FA
Sbjct: 59 SNNLPHMLFYGPPGTGKTSTILALARQLFGPELMKTRVLELNASDERGISVVREKIKNFA 118
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+AV + + G+PCPP+KIIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++RI
Sbjct: 119 KLAVTNPKE--GFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRI 176
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYL 257
IEPLASRC+KFRF+ L +R+ I + E ++ D+ L TL S S GDLRRAITYL
Sbjct: 177 IEPLASRCSKFRFRSLDTSSTKTRLEMIASAESVSFQDSTVLDTLISTSDGDLRRAITYL 236
Query: 258 QGAARLFG------SSITSKDLISVSGVIPPEVV--------------------EGLFAV 291
Q A+RL SS+TS+ ++ ++GV+P V+ E + A
Sbjct: 237 QSASRLHSIAGDEKSSVTSESIVEIAGVVPTRVITSLADAVGIEAYNADDDVEMEAVGAP 296
Query: 292 CRSGD-FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCL 350
+ D FD EV I EGY + LL QL D V+ + + +A+ +AE+DKCL
Sbjct: 297 AKKRDAFDRIRDEVRIITREGYSITQLLVQLHDYVIAHPTLLAKIKAKAALLMAEMDKCL 356
Query: 351 VDGADE 356
+DGADE
Sbjct: 357 IDGADE 362
>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
Length = 382
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 181/363 (49%), Positives = 237/363 (65%), Gaps = 31/363 (8%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
TT SS EK + E R QPWVEKYRPK + DV Q+ + VL TL+ +N PH
Sbjct: 18 TTSSSTEKQKSETTR--------VQPWVEKYRPKTLSDVTAQDHTITVLERTLQASNLPH 69
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 70 MLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTN 129
Query: 145 --GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PL
Sbjct: 130 PPAGYKTRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 189
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
ASRC+KFRFK L + R+ I EG+ ++ A+ L S GDLR+AIT+LQ AAR
Sbjct: 190 ASRCSKFRFKSLDQGNARRRLEEIARLEGVPIEDAAVDALIKCSDGDLRKAITFLQSAAR 249
Query: 263 LFGSS-----------------ITSKDLISVSGVIPPEVVEGLFAVCR---SGD-FDLAN 301
L G+S +T+K + ++GVIP ++ L R +G+ +
Sbjct: 250 LVGASASVAGGEDGEAMDVDKMVTAKVVEDIAGVIPDSTIQALVQAMRPRAAGETYQAIA 309
Query: 302 KEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLL 361
K V ++A+G+ A ++QL VV E I D Q+ +I +E DK LVDGADE+L +L
Sbjct: 310 KVVEEMVADGWSAGQTMTQLHSAVVYDETIPDIQKNKIVMVFSETDKRLVDGADEHLSIL 369
Query: 362 DVA 364
D+A
Sbjct: 370 DLA 372
>gi|406866228|gb|EKD19268.1| activator 1 41 kDa subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 385
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 236/351 (67%), Gaps = 31/351 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 32 QPWVEKYRPKNLNDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 91
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 92 PELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRALYPCPPYKIIILDEADS 151
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L RV I
Sbjct: 152 MTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDVGNAKRRVEEI 211
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-------------------- 266
+EG++L+ A TL S+GDLR+AIT+LQ AARL G+
Sbjct: 212 AEKEGVSLEDGAAETLIRCSEGDLRKAITFLQSAARLVGAVALRDDKEDKDEDSMDVDRE 271
Query: 267 --SITSKDLISVSGVIPPEVVEGLFAVCRSGD----FDLANKEVNNIIAEGYPASLLLSQ 320
++T K + ++GVIP + L + ++ +K V +++A+G+ A+ +++Q
Sbjct: 272 KKAVTVKSVEDIAGVIPDATISRLVTAMQPKSKGLVYEAVSKVVTDMVADGWSATQVVTQ 331
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA---SNVI 368
LF ++ E D Q+ +I +E DK LVDG+DE+L +LD+A SN++
Sbjct: 332 LFQAIIYNETTPDIQKNKITLVFSEADKRLVDGSDEHLIVLDLALRISNIL 382
>gi|346979302|gb|EGY22754.1| replication factor C subunit 2 [Verticillium dahliae VdLs.17]
Length = 380
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/338 (51%), Positives = 232/338 (68%), Gaps = 21/338 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V +L TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 32 AQPWVEKYRPKTLSDVTAQDHTVTILQRTLQASNLPHMLFYGPPGTGKTSTILALAKELY 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GPEL K+RVLELNASD+RGI++VR K+K FA + + + + + YPCPP+KIIILDEAD
Sbjct: 92 GPELIKTRVLELNASDERGISIVREKVKNFARMQLTNPTAEYKKRYPCPPFKIIILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 152 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLEE 211
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------ITS 270
I EG+ L+ A+ L S+GDLR+AIT+LQ AARL G++ IT
Sbjct: 212 IAKNEGVELEEGAVDALIKCSEGDLRKAITFLQSAARLVGATENADGDQSMDVDKKPITV 271
Query: 271 KDLISVSGVIPPEVVEGLFAVCR---SGD-FDLANKEVNNIIAEGYPASLLLSQLFDVVV 326
K + ++GVIP + L R SGD + V ++A+G+ A ++SQL+ +V
Sbjct: 272 KIIEDIAGVIPESTINKLTTAIRPQKSGDTYQNVAGVVEEMVADGWSAGQVVSQLYQHIV 331
Query: 327 ETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
E I D Q+ +I +EVDK LVDGADE+L +LD++
Sbjct: 332 YDEAIPDVQKNKIVLIFSEVDKRLVDGADEHLSILDLS 369
>gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
Length = 387
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 182/369 (49%), Positives = 240/369 (65%), Gaps = 38/369 (10%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+KFRFK L + R+ I EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLVGA 251
Query: 267 -SITSKD-----------------LISV------SGVIPPEVVEGLFAVCRS----GDFD 298
+ T+KD L++V +GVIP + ++ L R +
Sbjct: 252 VAATAKDGEQKETEGDDEMEVDAKLVTVKVVEDIAGVIPDDTIQRLLEAMRPRAGVDTYP 311
Query: 299 LANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYL 358
K V ++A+G+ A ++QL+ VV E I D Q+ +I +EVDK LVDGADE+L
Sbjct: 312 AVAKVVEEMVADGWSAGQTMTQLYQAVVFDEMIPDVQKNKIVMVFSEVDKRLVDGADEHL 371
Query: 359 QLLDVASNV 367
+LD+A +
Sbjct: 372 SVLDLALRI 380
>gi|367042572|ref|XP_003651666.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
gi|346998928|gb|AEO65330.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
Length = 383
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/343 (51%), Positives = 233/343 (67%), Gaps = 24/343 (6%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 34 QPWVEKYRPKTLSDVTAQDHTVSVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + + YPCPP+KIIILDEADS
Sbjct: 94 PELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPPGYKARYPCPPFKIIILDEADS 153
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+ I
Sbjct: 154 MTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEEI 213
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS------------------I 268
EG+ ++ A+ L S GDLR+AIT+LQ AARL G+S +
Sbjct: 214 ARLEGVGMEDGAVDALIKCSDGDLRKAITFLQSAARLVGASSAGSDGKDEDRMGVDKKLV 273
Query: 269 TSKDLISVSGVIPPEVVEGLFAVCR---SGD-FDLANKEVNNIIAEGYPASLLLSQLFDV 324
T+K + ++GVIP + ++ L A R +G+ + K V +++A+G+ A ++QL
Sbjct: 274 TAKVVEDIAGVIPDDTIQKLVAAMRPRAAGETYQAIAKVVEDLVADGWSAGQTMAQLHQA 333
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
VV E I D Q+ RI +E+DK LVDGADE+L +LD+A +
Sbjct: 334 VVYDETIPDIQKNRIVMVFSEIDKRLVDGADEHLSILDLALRI 376
>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus Af293]
gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus Af293]
gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus A1163]
Length = 394
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 173/348 (49%), Positives = 228/348 (65%), Gaps = 34/348 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 39 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 98
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-------GYPCPPYKIIIL 161
P LY+SR+LELNASD+RGI +VR K+K FA + Q G YPCPP+KIIIL
Sbjct: 99 PALYRSRILELNASDERGIGIVREKVKGFARTQLS--QPTGLDSSYFEQYPCPPFKIIIL 156
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFKPL +
Sbjct: 157 DEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAAE 216
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-------------- 267
R+ HI E L LD + L S S+GDLRRAITY+Q AARL G+
Sbjct: 217 RLAHIARLENLKLDEGVIDKLISCSEGDLRRAITYMQSAARLVGAGRPTSQKDGDEDSEM 276
Query: 268 -------ITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASL 316
+T + + ++GV+P V++ L + ++ + V +I+A+G+ A
Sbjct: 277 TDASSEPVTMQMIEEIAGVVPESVIDRLIQAMQPKKLGSSYEAISTVVTDIVADGWSAGQ 336
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
L+ QL+ +V + I D Q+ +I +E+DK LVDGADE+L +LD+A
Sbjct: 337 LVLQLYRRIVYNDAIPDIQKNKIVTAFSEMDKRLVDGADEHLSILDLA 384
>gi|428170599|gb|EKX39523.1| replication factor C, subunit RFC4 [Guillardia theta CCMP2712]
Length = 324
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/324 (53%), Positives = 228/324 (70%), Gaps = 7/324 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVE++RP + VAHQ VV L++ +E+ N PH+LFYGPPGTGKT+T LA+A L+GP
Sbjct: 3 PWVEQHRPSSIAQVAHQRHVVATLSSAVESGNLPHLLFYGPPGTGKTSTILALAKDLYGP 62
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELYKSRVLELNASD+RGI+VVR KIK FA++AV S + YPCPP+K++ILDEAD MT
Sbjct: 63 ELYKSRVLELNASDERGIDVVRNKIKHFASLAVSSSKSSS-YPCPPFKLVILDEADCMTT 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ+ALRRTMET ++VTRF ICNY+SRII P+ASRCAKFRF+P+S EVM R+ I ++
Sbjct: 122 DAQSALRRTMETCTRVTRFCIICNYVSRIISPIASRCAKFRFQPVSTEVMLERLNMIADK 181
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG L ++ L +IS GDLRRAIT +Q L G+S+ +D+I + IP V+ L
Sbjct: 182 EGFQLPSDVTDALVNISGGDLRRAITMMQNTYILHGNSMKGQDIIENAATIPDSVILDLV 241
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE--DISDEQQARICKCLAEVD 347
C+ F+ +VN+IIA+GYPA +Q+ D V+ E IS + ++ ICK L D
Sbjct: 242 NSCKYNSFEKIQSKVNDIIADGYPA----NQIHDWVMSKEAFGISAKSKSIICKALGTTD 297
Query: 348 KCLVDGADEYLQLLDVASNVIRAV 371
L DG+D L LL + S +++A+
Sbjct: 298 MRLTDGSDVTLSLLHLVSVIMQAL 321
>gi|350296832|gb|EGZ77809.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2509]
Length = 387
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 181/369 (49%), Positives = 240/369 (65%), Gaps = 38/369 (10%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL K+RVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKARVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+KFRFK L + R+ I EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAIDALIKCSEGDLRKAITYLQSAARLVGA 251
Query: 267 -SITSKD-----------------LISV------SGVIPPEVVEGLFAVCRS----GDFD 298
+ T+KD L++V +GVIP + ++ L R +
Sbjct: 252 VAATAKDGEQKETEGDDEMEVDAKLVTVKVVEDIAGVIPDDTIQRLLEAMRPRAGVDTYP 311
Query: 299 LANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYL 358
K V ++A+G+ A ++QL+ VV E I D Q+ +I +EVDK LVDGADE+L
Sbjct: 312 AVAKVVEEMVADGWSAGQTMTQLYQAVVFDEMIPDVQKNKIVMVFSEVDKRLVDGADEHL 371
Query: 359 QLLDVASNV 367
+LD+A +
Sbjct: 372 SVLDLALRI 380
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 169/328 (51%), Positives = 225/328 (68%), Gaps = 6/328 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWVEKYRP+++ DVA Q + VL TLE+AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 19 EESKPWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKE 78
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGP L KSRVLELNASD+RGI++VR K+K FA + V + + YPCPPYKIIILDE
Sbjct: 79 LFGPSLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDE 138
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFKPL R+
Sbjct: 139 ADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRL 198
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSITSKDLISVSGV 279
I +E L+ +A AL + I++GDLR+AIT LQ AA++ IT + ++GV
Sbjct: 199 EQIAQQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITIAQVEELAGV 258
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P ++++GL S D K VN ++ G+ S ++SQL D E ++ E++ +I
Sbjct: 259 VPDDIIKGLVEKIESKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKI 318
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNV 367
L + D L +G DE++QLLD+A +
Sbjct: 319 FLLLFKTDSRLSNGTDEHIQLLDLAMKI 346
>gi|171680165|ref|XP_001905028.1| hypothetical protein [Podospora anserina S mat+]
gi|170939709|emb|CAP64935.1| unnamed protein product [Podospora anserina S mat+]
Length = 405
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 177/365 (48%), Positives = 235/365 (64%), Gaps = 46/365 (12%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC--------------------PHMLFY 88
QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 34 QPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNVCSPPSPPSSFPTNMTLSPQLPHMLFY 93
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA---VGSG 145
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + V S
Sbjct: 94 GPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNVSSA 153
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASR
Sbjct: 154 AYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASR 213
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C+KFRFK L + R+ I +E + LD A+ L + ++GDLR+AITYLQ AARL G
Sbjct: 214 CSKFRFKSLDQGNAKKRLEEIAEKEKVGLDEGAVEGLINCAEGDLRKAITYLQSAARLVG 273
Query: 266 S-------------------SITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANK 302
+ +++ K L ++GVIP E + L R G++ K
Sbjct: 274 AVQQPGGGDDGEDGMDVDKKTVSVKILQDIAGVIPDETIHTLLKAMRPTTFGGNYTPIAK 333
Query: 303 EVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
EV +++A+G+ A +++QL+ VV E I D Q+ +I +E+DK LVDGADE+L +LD
Sbjct: 334 EVEDMVADGWSAGQVVTQLYQAVVYDETIEDAQKNKILLVFSEIDKRLVDGADEHLSILD 393
Query: 363 VASNV 367
+A +
Sbjct: 394 LALRI 398
>gi|402225443|gb|EJU05504.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 178/346 (51%), Positives = 229/346 (66%), Gaps = 21/346 (6%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S QPW+EKYRPK +++++ QE V+VL TL +AN PHMLFYGPPGTGKT+T LA+A QL
Sbjct: 24 SLQPWIEKYRPKTMEEISAQEHTVQVLKKTLGSANLPHMLFYGPPGTGKTSTILALARQL 83
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEA 164
FGPEL++SRVLELNASD+RGI VVR KIK FA + GYPCPPYKIIILDEA
Sbjct: 84 FGPELFRSRVLELNASDERGITVVREKIKNFARQTPRAADDEASKGYPCPPYKIIILDEA 143
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT+DAQ ALRR METY+K+TRF +CNY++RIIEPLASRC+KFRF L +R+
Sbjct: 144 DSMTQDAQAALRRVMETYAKITRFCLVCNYVTRIIEPLASRCSKFRFHTLDASSNRARLE 203
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSGV 279
+I E +++ +STL S S+GDLRR+ITYLQ A RL S+ I +D+ ++GV
Sbjct: 204 YIATAEHVSVTPAVISTLISTSEGDLRRSITYLQSAHRLSASTSPPTEIQPRDIQEIAGV 263
Query: 280 IPPEVVEGL---FAVCRSGD-----------FDLANKEVNNIIAEGYPASLLLSQLFDVV 325
IP VV V GD FD V ++ GY A+ +LSQL D++
Sbjct: 264 IPNAVVNRFAKALGVEVDGDVDMDIDARKQGFDGVRNAVQELVMGGYSATQVLSQLHDII 323
Query: 326 VETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+ +S Q+++ AE+DK L DGADE LQL+D+ V + +
Sbjct: 324 ILHPLLSGPQKSKCALVFAEIDKKLSDGADEELQLVDMGLRVWKVL 369
>gi|121705176|ref|XP_001270851.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
gi|119398997|gb|EAW09425.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
Length = 391
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 174/348 (50%), Positives = 227/348 (65%), Gaps = 34/348 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-------GYPCPPYKIIIL 161
P LY+SR+LELNASD+RGI +VR KIK FA + Q G YPCPP+KIIIL
Sbjct: 96 PALYRSRILELNASDERGIGIVREKIKGFARTQLS--QPTGLDSSYFEQYPCPPFKIIIL 153
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFKPL
Sbjct: 154 DEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGE 213
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------------- 265
R+ I +E LNL+ + L S +GDLRRAITY+Q AARL G
Sbjct: 214 RLKSIAEQENLNLEDGVIEKLISCGEGDLRRAITYMQSAARLVGVGRAAAPKDGDEDSEM 273
Query: 266 -----SSITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASL 316
+IT + + ++GV+P V++ L + ++ + V +I+A+G+ A
Sbjct: 274 ADAGSQAITVRTIEEIAGVVPESVLDRLVQAMQPKKLGSSYEAVSAVVTDIVADGWSAGQ 333
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
L+ QL+ +V + I D Q+ RI +E+DK LVDGADE+L +LD+A
Sbjct: 334 LVLQLYRRIVYNDAIPDIQKNRIVTAFSEMDKRLVDGADEHLSILDLA 381
>gi|317027180|ref|XP_001400326.2| replication factor C subunit 2 [Aspergillus niger CBS 513.88]
Length = 389
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 173/348 (49%), Positives = 229/348 (65%), Gaps = 29/348 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 35 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRR-GGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + G G+ YPCPP+KIIILDE
Sbjct: 95 PSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 155 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERL 214
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
HI E L L+ + L + S+GD+RRAITY+Q AA+L G+
Sbjct: 215 EHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGAGRAGKKDEDEDEEMTDQ 274
Query: 268 ----ITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLLLS 319
IT + + ++GV+P V++ L + ++ K V +IIA+G+ A+ LL
Sbjct: 275 ESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEAVAKVVTDIIADGWSATQLLL 334
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
QL+ VV + I D Q+ +I +++D+ LVDGADE+L +LDVA +
Sbjct: 335 QLYRRVVFNDAIPDIQKNKIVMVFSDMDRRLVDGADEHLSILDVALKI 382
>gi|348688417|gb|EGZ28231.1| hypothetical protein PHYSODRAFT_551952 [Phytophthora sojae]
Length = 339
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 175/330 (53%), Positives = 226/330 (68%), Gaps = 11/330 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
APVL PWVEKYRPK V +++HQE VV L ++ PH+LFYGPPGTGKT+T +A
Sbjct: 14 APVL----PWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVA 69
Query: 102 IAHQLFGPELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+ QLFGP+ K+ R LELNASDDRGI VVR K+K+FA A+ S PP+KII+
Sbjct: 70 VGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASG-----LPPFKIIV 124
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT DAQ+ALRR ME YSKVTRF ICNY+SRIIEP+ASRCAKFRF PL M+
Sbjct: 125 LDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLERGSMA 184
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGV 279
SRV I +EE +N+ L +L S GDLR+AI YLQ A +L G ++ D+I+V+G+
Sbjct: 185 SRVRFIASEEHVNVPDPVLESLLECSNGDLRKAINYLQSAKQLCGDDELSQDDVIAVAGL 244
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
PPE+++ + S F+ ++ +I+ GYP +L QL D V+ + ++D Q+A+I
Sbjct: 245 APPELLKQFWVSVASNSFEKMKTDIESILLAGYPVLTILRQLNDDVLALDKLNDVQKAKI 304
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
+AE DK LVDGA E+ QLLDVAS +R
Sbjct: 305 SLRIAEADKRLVDGASEHFQLLDVASYAMR 334
>gi|448537421|ref|XP_003871334.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380355691|emb|CCG25209.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 355
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 175/341 (51%), Positives = 229/341 (67%), Gaps = 19/341 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+A QE V+VL + T N PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 15 PWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + + YPCPPYKIIILDEADSM
Sbjct: 75 NLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTPEDLKNYPCPPYKIIILDEADSM 134
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETY+ +TRF +CNYI+RII+PLASRC+KFRFK L+ E +R+ +I
Sbjct: 135 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIA 194
Query: 228 NEEGLNLDAE-----ALSTLSSISQGDLRRAITYLQGAARLFGS------------SITS 270
NEE LNLD L+ + IS GDLR+AITYLQ A++L S IT
Sbjct: 195 NEEQLNLDKSQGEDGVLNEVLKISNGDLRKAITYLQSASKLSTSLQLEDDQDGNAGLITK 254
Query: 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETED 330
+ + +GV+P E+++ L RS + + VN+II G+ A L+ QL +V+V +
Sbjct: 255 QSIRETAGVLPDELIDSLIKTIRSKNEEKLISLVNDIILSGWSAQQLIDQLHEVLVIDDS 314
Query: 331 ISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
I+ + +I L + DK L G DE++QLL++ V + +
Sbjct: 315 INSLVKNQIALILFDTDKKLNFGTDEHIQLLNLVLQVSKVI 355
>gi|392595637|gb|EIW84960.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 369
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 183/358 (51%), Positives = 233/358 (65%), Gaps = 34/358 (9%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K + P LQ PWVEKYRPK + +V+ QE V VL TL + N PHMLFYGPPGTGKT+
Sbjct: 12 KHTVEPALQ---PWVEKYRPKTIDEVSAQEHAVAVLRKTLFSTNLPHMLFYGPPGTGKTS 68
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYP 152
T LA+A QLFGP+ +++RVLELNASDDRGI++VR KIK FA A AV S + YP
Sbjct: 69 TILALARQLFGPDNFRNRVLELNASDDRGISIVREKIKNFARQTPRAQAVASDGK--TYP 126
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
CPPYKIIILDEADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF
Sbjct: 127 CPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFT 186
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----- 267
PL S+R+ HI +E +++ E + L S GDLRR+ITYLQ A+RL SS
Sbjct: 187 PLDSSSTSNRLSHIAAQEHVDVSPEVIQALIDTSSGDLRRSITYLQSASRLSASSEPPTP 246
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVC------------------RSGDFDLANKEVNNIIA 309
IT++D+ ++GV+P V+ FA R DFD K+V +I
Sbjct: 247 ITARDIQEIAGVVPNGVMLD-FACALGIEFSGDMDVDSDTDRGRKRDFDGIRKKVKEVIR 305
Query: 310 EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+GY AS +L QL D+V+ + Q+AR +E DK L DGADE L +L++ V
Sbjct: 306 QGYSASQILLQLHDLVILHPTLPARQKARCALIFSEADKALCDGADEELWVLEIGLQV 363
>gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str.
Silveira]
Length = 393
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/348 (50%), Positives = 230/348 (66%), Gaps = 32/348 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGIN+VR KIK FA + + + R YPCPP+KIIILDE
Sbjct: 96 PKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIILDE 155
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME +S++TRF +CNY++RII+PLASRC+KFRFK L +R+
Sbjct: 156 ADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGTRL 215
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD----------- 272
I E L LD + L S+GDLRRAITY+Q AARL GS ++ K
Sbjct: 216 EEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQSAARLVGSGLSGKSGKDESGDEVMT 275
Query: 273 ------LISV------SGVIPPEVVEGLFAVC---RSGD-FDLANKEVNNIIAEGYPASL 316
+I+V +GV+P +VV L + G ++ + V +I+A+G+ A
Sbjct: 276 DADQSGVITVQTVEEIAGVVPDKVVNRLIDAMQPKKGGSVYEGVARVVTDIVADGWSAGQ 335
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
+LSQ++ +V E I+D Q+ I +E DK L+DGADE L +LD+A
Sbjct: 336 MLSQMYQAIVFNESIADIQKNDIVLVFSEYDKRLIDGADEQLSILDLA 383
>gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
Length = 394
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 227/346 (65%), Gaps = 31/346 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 39 QPWVEKYRPKSLDDVAAQDHTTTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 98
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-----GQRRGGYPCPPYKIIILDE 163
P LY++R+LELNASD+RGIN+VR KIK FA + R YPCPP+KIIILDE
Sbjct: 99 PTLYRTRILELNASDERGINIVREKIKDFARTQLSQPSGLDAAYREKYPCPPFKIIILDE 158
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 159 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDGVSAGDRI 218
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
I EGL LD + TL S+GDLRRAITYLQ AARL G++
Sbjct: 219 SEIAAAEGLTLDEGVVETLIRCSEGDLRRAITYLQSAARLVGATQPVKKDSQDDTEMTDA 278
Query: 268 ------ITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLL 317
IT + + ++GV+P V++ L + ++ V++I+A+G+ A+ +
Sbjct: 279 DSAPALITVRTVEEIAGVVPESVLDKLMQAMQPKKMGSAYEAVAAVVSDIVADGWSATQI 338
Query: 318 LSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
L+QL+ +V + I D Q+ +I +E+DK L+DG+DE+L +LD+
Sbjct: 339 LTQLYRRIVFNDAIPDIQKNKIVMVFSEMDKRLLDGSDEHLSILDM 384
>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
Length = 339
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 174/330 (52%), Positives = 227/330 (68%), Gaps = 11/330 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
APVL PWVEKYRPK V +++HQE VV L ++ PH+LFYGPPGTGKT+T +A
Sbjct: 14 APVL----PWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVA 69
Query: 102 IAHQLFGPELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+ QLFGP+ K+ R LELNASDDRGI VVR K+K+FA A+ S PP+KII+
Sbjct: 70 VGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSAS-----GLPPFKIIV 124
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT DAQ+ALRR ME YSKVTRF ICNY+SRIIEP+ASRCAKFRF PL + M+
Sbjct: 125 LDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLEKISMA 184
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGV 279
SRV I +EE +++ L +L S GDLR+AI YLQ A +L G ++ D+I+V+G+
Sbjct: 185 SRVRFIASEERVDVSDSVLESLLECSTGDLRKAINYLQSAKQLCGDDELSQDDVIAVAGL 244
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
PPE+++ + S F+ ++ +I+ GYP +L QL D V+ + ++D Q+A+I
Sbjct: 245 APPELLQQFWVSVTSNSFEKMKTDIESILLAGYPVLTILRQLNDDVLALDKLNDVQKAQI 304
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
C +A DK LVDGA E+ QLLDVAS +R
Sbjct: 305 CLRIAGADKRLVDGASEHFQLLDVASYAMR 334
>gi|307110220|gb|EFN58456.1| hypothetical protein CHLNCDRAFT_48527 [Chlorella variabilis]
Length = 293
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/327 (53%), Positives = 216/327 (66%), Gaps = 37/327 (11%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRP+ + +VAHQEEVV+ L + L + N PH+LFYGPPGTGKTT+ALAI QL
Sbjct: 2 AHQPWVEKYRPRSIGEVAHQEEVVQTLQHALSSGNLPHLLFYGPPGTGKTTSALAIVRQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FGPEL K+RVLELNASD+RGI VVR KIK FAA +VG G GYPCPP+K+IILDEADS
Sbjct: 62 FGPELCKARVLELNASDERGIGVVRDKIKNFAANSVGQGV--AGYPCPPFKVIILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQNALRRTMETYS+VTRF FICNY+SRIIEPLASRCAKFRFKPL +V++ R+ HI
Sbjct: 120 MTGDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQGDVINERINHI 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
C + + G R ++ VSG +PP +
Sbjct: 180 C---------------AGAAGGGCRH--------------------ILDVSGSVPPSAAQ 204
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
GL A RS F V ++IA+GYPA +L QL +++ +D + +I L+E
Sbjct: 205 GLLAAARSPQFARVQAAVTDLIADGYPAQEILLQLQAALLQDAGAADSAKGKILVRLSEA 264
Query: 347 DKCLVDGADEYLQLLDVASNVIRAVCN 373
DK LVDG+DE+LQLL AS R +
Sbjct: 265 DKSLVDGSDEFLQLLGAASYAQRVLAG 291
>gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 393
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 176/370 (47%), Positives = 237/370 (64%), Gaps = 39/370 (10%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
S+ Q + E +E++ + QPWVEKYRPK + DVA Q+ VL TL+ +N P
Sbjct: 23 SSKQKTSENAEEQARL---------QPWVEKYRPKSLDDVAAQDHTTAVLQRTLQASNLP 73
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
HMLFYGPPGTGKT+T LA++ LFGP LY++R+LELNASD+RGIN+VR KIK FA +
Sbjct: 74 HMLFYGPPGTGKTSTILALSKSLFGPALYRTRILELNASDERGINIVREKIKDFARTQLS 133
Query: 144 -----SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CNY++RI
Sbjct: 134 HPSGLDAAYKAKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRI 193
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
IEPLASRC+KFRFK L R+ I EGL LD + TL S+GDLRRAITYLQ
Sbjct: 194 IEPLASRCSKFRFKALDGVSAGDRINEIAQAEGLTLDDGVVDTLIRCSEGDLRRAITYLQ 253
Query: 259 GAARLFGSSITSK---------------DLISV------SGVIPPEVVEGLFAVCR---- 293
AARL G++ T K LI+V +GV+P V++ L +
Sbjct: 254 SAARLVGATSTQKGKKDQEDTEMTDAGSSLITVQTVEEIAGVVPESVLDKLTQAMQPKKM 313
Query: 294 SGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDG 353
++ V++I+A+G+ A+ +L+QL+ V + I D Q+ +I +E+DK L+DG
Sbjct: 314 GSAYEAVASVVSDIVADGWSATQILTQLYRRTVFNDAIPDTQKNKIVMVFSEMDKRLLDG 373
Query: 354 ADEYLQLLDV 363
+DE+L +LD+
Sbjct: 374 SDEHLSILDM 383
>gi|388852328|emb|CCF53943.1| probable RFC2-DNA replication factor C, 41 KD subunit [Ustilago
hordei]
Length = 383
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 182/364 (50%), Positives = 239/364 (65%), Gaps = 31/364 (8%)
Query: 19 FTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE 78
F Q+ S S+ + ++ K K+A +S+PWVEKYRPK + DVA QE V VL TL
Sbjct: 2 FLQQASKAHSANQAAQ---KEKLAREKATSRPWVEKYRPKTIDDVAAQEHTVAVLKKTLM 58
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ N PHMLFYGPPGTGKT+T LA+A QLFGPEL K+RVLELNASD+RGI VVR KIK FA
Sbjct: 59 SNNLPHMLFYGPPGTGKTSTILALARQLFGPELVKTRVLELNASDERGITVVREKIKNFA 118
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+AV + + G+PCPP+KIIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++RI
Sbjct: 119 KLAVTNPKE--GFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRI 176
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYL 257
IEPLASRC+KFRF+ L +R+ I E ++ D+ L TL + S GDLRRAITYL
Sbjct: 177 IEPLASRCSKFRFRSLDTCSTKTRLEMIAGAESVSFQDSSVLDTLITTSDGDLRRAITYL 236
Query: 258 QGAARLFG------SSITSKDLISVSGVIPPEVVEGLF-AVC-----RSGD--------- 296
Q A+RL +S+TS+ ++ ++GV+P V+ L AV GD
Sbjct: 237 QSASRLHSIAGDDKTSVTSESIVEIAGVVPTRVITSLADAVAIEPYTSDGDEDMDPVSKK 296
Query: 297 ----FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVD 352
F+ ++V I EGY + LL QL D ++ + + +A++ +AE+DKCL D
Sbjct: 297 KRDAFERIREQVKIITREGYSITQLLVQLHDYIISHPTLLAKIKAKVALLMAEMDKCLTD 356
Query: 353 GADE 356
GADE
Sbjct: 357 GADE 360
>gi|358367795|dbj|GAA84413.1| DNA replication factor C subunit Rfc2 [Aspergillus kawachii IFO
4308]
Length = 389
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/396 (45%), Positives = 245/396 (61%), Gaps = 43/396 (10%)
Query: 1 MRANFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV 60
M ANF NK+ + ++ P S++E ++ QPWVEKYRPK +
Sbjct: 1 MAANFFN------NKARAAAAAANPSKPKPTDSKEEQAKQ--------QPWVEKYRPKTL 46
Query: 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120
DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFGP LY+SR+LELN
Sbjct: 47 DDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELN 106
Query: 121 ASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
ASD+RGI +VR KIK FA + S + YPCPP+KIIILDEADSMT+DAQ+AL
Sbjct: 107 ASDERGIGIVRDKIKNFARAQLTHSTGLSEEYLAQYPCPPFKIIILDEADSMTQDAQSAL 166
Query: 176 RRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD 235
RRTME YS++TRF +CNY++RIIEPLASRC+KFRFK L R+ HI E L L+
Sbjct: 167 RRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNSAAGERLEHIAKVENLRLE 226
Query: 236 AEALSTLSSISQGDLRRAITYLQGAARLFGSS--------------------ITSKDLIS 275
+ L + S+GD+RRAITY+Q AA+L G+ IT + +
Sbjct: 227 DGVVDKLIACSEGDMRRAITYMQSAAKLVGAGRAGKKDEDEDEEMTDQESEVITIRTIEE 286
Query: 276 VSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDI 331
++GV+P V++ L + ++ K V +IIA+G+ A+ LL QL+ VV + I
Sbjct: 287 IAGVVPEGVLDALVQAMQPKKIGSSYEAVAKVVTDIIADGWSATQLLLQLYRRVVFNDAI 346
Query: 332 SDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
D Q+ +I +++D+ LVDGADE+L +LD+A +
Sbjct: 347 PDIQKNKIVMAFSDMDRRLVDGADEHLSILDIALKI 382
>gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS]
gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
Length = 393
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 175/348 (50%), Positives = 229/348 (65%), Gaps = 32/348 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGIN+VR KIK FA + + + R YPCPP+KIIILDE
Sbjct: 96 PKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIILDE 155
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME +S++TRF +CNY++RII+PLASRC+KFRFK L +R+
Sbjct: 156 ADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGTRL 215
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD----------- 272
I E L LD + L S+GDLRRAITY+Q AARL GS ++ K
Sbjct: 216 EEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQSAARLVGSGLSGKSGKDESGDEVMT 275
Query: 273 ------LISV------SGVIPPEVVEGLFAVC---RSGD-FDLANKEVNNIIAEGYPASL 316
+I+V +GV+P +VV L + G ++ + V +I+A+G+ A
Sbjct: 276 DADQSGVITVQTVEEIAGVVPDKVVNRLIDAMQPKKGGSVYEGVARVVTDIVADGWSAGQ 335
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
+LSQ++ +V E I D Q+ I +E DK L+DGADE L +LD+A
Sbjct: 336 MLSQMYQAIVFNESIPDIQKNDIVLVFSEYDKRLIDGADEQLSILDLA 383
>gi|393245398|gb|EJD52908.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 376
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 236/363 (65%), Gaps = 39/363 (10%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
+D K + P LQ PWVEKYRPK ++DV QE V VL TL + N PHMLFYGPPGT
Sbjct: 11 KDAAKHTVDPQLQ---PWVEKYRPKTIEDVTAQEHTVAVLRKTLTSTNLPHMLFYGPPGT 67
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA------VAVGSGQR 147
GKT+T LA+A QL+GP+ +++RVLELNASD+RGI +VR KIK FA VA GQ
Sbjct: 68 GKTSTILALARQLYGPDNFRTRVLELNASDERGITIVREKIKDFARQTPRANVASSDGQ- 126
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
YPCPPYKIIILDEADSMT+DAQ ALRR ME Y+++TRF +CNY++RIIEPLASRC+
Sbjct: 127 --TYPCPPYKIIILDEADSMTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCS 184
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
KFRFKPL R+ +I +EG+N+ + + +L + S GDLRR+ITYLQ A+RL +
Sbjct: 185 KFRFKPLDNSSTHGRLEYIAQQEGVNISQDTIKSLIACSGGDLRRSITYLQTASRLANAQ 244
Query: 268 -ITSKDLISVSGVIPPEVVEGLFAVCRSGD-------------------------FDLAN 301
I+ +D+ ++GV+ P+VV FA D F
Sbjct: 245 PISPRDIQEIAGVV-PDVVVNDFARTLGVDTRYGPTAKADEDSMSVDASAVPDKGFMPVR 303
Query: 302 KEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLL 361
K+V ++ EGY + LL+QL DV++E ++I+ +Q+++ AE DK L DGADE L +L
Sbjct: 304 KKVAALMREGYSGAQLLTQLHDVIIENDNINSKQKSKCALVFAEADKALCDGADEELWIL 363
Query: 362 DVA 364
+VA
Sbjct: 364 EVA 366
>gi|340992727|gb|EGS23282.1| replication factor C subunit 2-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 384
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 180/375 (48%), Positives = 240/375 (64%), Gaps = 33/375 (8%)
Query: 15 KSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLT 74
K+ Q T +S EK E R +QPWVEKYRPK + DV Q+ V VL
Sbjct: 8 KARRAAQSNGTASTSTEKQTAEHTR--------AQPWVEKYRPKTLNDVTAQDHTVSVLQ 59
Query: 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134
TL+ +N PHMLFYGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI+++R K+
Sbjct: 60 RTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIIREKV 119
Query: 135 KTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192
K FA + + + YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF IC
Sbjct: 120 KDFARTQLTNPPPGYKTKYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLIC 179
Query: 193 NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252
NY++RII+PLASRC+KFRFK L + R+ I E + L A+ L S+GDLR+
Sbjct: 180 NYVTRIIDPLASRCSKFRFKSLDQGNARKRLEEIAQLENVGLADGAVDALIRCSEGDLRK 239
Query: 253 AITYLQGAARLFGSS-------------------ITSKDLISVSGVIPPEVVEGLFAVCR 293
AIT+LQ AARL G+S +T+K + ++GVIP + ++ L R
Sbjct: 240 AITFLQSAARLVGASQAAQGDSEDGDKMDVDKTLVTAKIVEDIAGVIPDDTIQKLVKAMR 299
Query: 294 ---SGD-FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+G+ + K V ++A+G+ A L+QL +V E I D Q+ +I +E+DK
Sbjct: 300 PRATGETYSAIAKVVEEMVADGWSAGQTLAQLHKAIVYDETIPDTQKNKIVMVFSEIDKR 359
Query: 350 LVDGADEYLQLLDVA 364
LVDGADE+L +LD+A
Sbjct: 360 LVDGADEHLSMLDLA 374
>gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 394
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 174/352 (49%), Positives = 229/352 (65%), Gaps = 33/352 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A L+G
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L R+
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRL 214
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
I E L L + TL S+GDLRRAITYLQ AARL GS+
Sbjct: 215 EEIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQSAARLVGSTEGTKQGGKDESGDTEM 274
Query: 268 --------ITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPAS 315
IT K + ++GV+P +VV+ L + ++ ++ V +I+A+G+ AS
Sbjct: 275 ADAGEDGIITVKTIEEIAGVVPDDVVDRLIKALQPKKGRSSYEAVSQVVTDIVADGWSAS 334
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+L+QL+ ++V + I D + I +E DK L+DGADE+L LLD+ +
Sbjct: 335 QMLTQLYQIIVFDDSIPDIHKNSIVMVFSEFDKRLIDGADEHLTLLDLVLRI 386
>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
Length = 380
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 237/357 (66%), Gaps = 31/357 (8%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++QPWVEKYRPK + +++ QE VL+ TL +AN PHMLFYGPPGTGKT+T LA+A +L
Sbjct: 27 ANQPWVEKYRPKTINEISAQEHTTSVLSRTLTSANLPHMLFYGPPGTGKTSTILALAREL 86
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGYPCPPYKIII 160
FGP+ +++RVLELNASD+RGI++VR KIK FA AV S + YPCPPYKIII
Sbjct: 87 FGPDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQQAVSSDGKT--YPCPPYKIII 144
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT+DAQ ALRR METY+K+TRF +CNY++RIIEPLASRC+KFRF PL + S
Sbjct: 145 LDEADSMTQDAQGALRRIMETYAKITRFCLVCNYVTRIIEPLASRCSKFRFTPLDPDSAS 204
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLIS 275
+R+ +I E +++ + L S S GDLRRAITYLQ AARL GSS I +D+
Sbjct: 205 ARLSYIAQAENIDISKPVIDALISTSHGDLRRAITYLQSAARLAGSSDPPTPILPRDIQE 264
Query: 276 VSGVIPPEVVEGLFAVC-----------------RSGDFDLANKEVNNIIAEGYPASLLL 318
++GV+P VV + ++ +F K+V ++ EGY A+ +L
Sbjct: 265 IAGVVPDGVVNDFASTLGVPVEDEGMEVDGQTSRKATNFSGIQKKVKELMREGYSATQIL 324
Query: 319 SQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMP 375
SQL D+++ +++ ++++ AE DK L DGADE L +L+V + +AV N P
Sbjct: 325 SQLHDLIMLHPELNGLKKSKCALAFAEADKALCDGADEELWVLEVGLKIHKAV-NAP 380
>gi|389631703|ref|XP_003713504.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
gi|351645837|gb|EHA53697.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
Length = 384
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/349 (49%), Positives = 235/349 (67%), Gaps = 23/349 (6%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+ K P +QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+
Sbjct: 23 QEKQNPENTRTQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTS 82
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPP 155
T LA+A +LFGPEL KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP
Sbjct: 83 TVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYKSKYPCPP 142
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L
Sbjct: 143 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 202
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----------- 264
+E SR+ I +EG+ L+ A+ L S+GDLR+AIT+LQ AARL
Sbjct: 203 QENARSRLEDIAAKEGVALEDGAVDALIKCSEGDLRKAITFLQSAARLVGAVGAAGAGQE 262
Query: 265 ------GSSITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPA 314
+T + + ++GVIP + ++ L R + + +K V +++A+G+ A
Sbjct: 263 DKMDVDSRPVTVRIIEDIAGVIPGKTIDALVEAIRPRGAALTYQAVSKVVEDMVADGWSA 322
Query: 315 SLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
+ ++ QL+ +V E I + Q+ I +EVDK LVDG+DE+L +LD+
Sbjct: 323 TQVVGQLYQAIVYDEGIPNIQKNEIVMVFSEVDKRLVDGSDEHLSILDL 371
>gi|408398889|gb|EKJ78015.1| hypothetical protein FPSE_01803 [Fusarium pseudograminearum CS3096]
Length = 382
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 170/349 (48%), Positives = 232/349 (66%), Gaps = 24/349 (6%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P +QPWVEKYRPK + DV Q+ V VL TL+++N PHMLFYGPPGTGKT+T LA+
Sbjct: 27 PTNTRNQPWVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLAL 86
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIII 160
A +L+GP++ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIII
Sbjct: 87 AKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPPPGYKDKYPCPPFKIII 146
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L +
Sbjct: 147 LDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAK 206
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD-------- 272
R+ I +EG+ L+ A+ L S+GDLR+AIT+LQ AARL G+S + KD
Sbjct: 207 KRLEEIAEKEGVPLEDGAVDALIKCSEGDLRKAITFLQSAARLVGASASDKDGEGDEAMD 266
Query: 273 ----------LISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLLL 318
+ ++GVIP + L + R + + V ++A+G+ A ++
Sbjct: 267 VDKKAVTVKIVEDIAGVIPDSTIGDLVSAIRPKSSGSSYQAISDVVEKLVADGWSAGQVV 326
Query: 319 SQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
QL+ + E I D Q+ +I +EVDK LVDGADE+L +LD++ +
Sbjct: 327 GQLYQALTYDEIIPDAQKNKIVMVFSEVDKRLVDGADEHLSVLDLSVRI 375
>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/315 (53%), Positives = 221/315 (70%), Gaps = 7/315 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V VL +L +AN PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 21 PWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGP 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+L KSRVLELNASD+RGI +VR K+K FA + V S + YPCPPYK+IILDEADSM
Sbjct: 81 DLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDEADSM 140
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRRTMETYS VTRF ICNYI+RII+PLASRC+KFRFKPL+ + R+ +I
Sbjct: 141 TYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKPLANDNAVQRLRYIV 200
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-----SSITSKDLISVSGVIPP 282
+E LN+D + S L +IS GDLRRAITYLQ AARL ++I++ L ++GV+P
Sbjct: 201 QQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARLASTTTEETTISAATLREIAGVVPE 260
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
E ++ L D V +++++G+ A +L QL ++ V ++ IS E + R +
Sbjct: 261 EQLKILHNTLEDKDVSAITSVVGDLVSQGWGAQQVLDQLHELYVHSDSISTETKNRAARL 320
Query: 343 LAEVDKCLVDGADEY 357
+ E D+ L +GADE+
Sbjct: 321 MFETDRRLNNGADEH 335
>gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus H143]
gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88]
Length = 394
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 174/352 (49%), Positives = 228/352 (64%), Gaps = 33/352 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A L+G
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L R+
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRL 214
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
I E L L + TL S+GDLRRAITYLQ AARL GS+
Sbjct: 215 EEIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQSAARLVGSTEGTKQGGKDESGDTEM 274
Query: 268 --------ITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPAS 315
IT K + ++GV+P +VV+ L + ++ + V +I+A+G+ AS
Sbjct: 275 ADAGEDGIITVKTIEEIAGVVPDDVVDRLIKALQPKKGRSSYEAVSHVVTDIVADGWSAS 334
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+L+QL+ ++V + I D + I +E DK L+DGADE+L LLD+ +
Sbjct: 335 QMLTQLYQIIVFDDSIPDIHKNSIVMVFSEFDKRLIDGADEHLTLLDLVLRI 386
>gi|347829788|emb|CCD45485.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 379
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/348 (49%), Positives = 234/348 (67%), Gaps = 32/348 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 93 PELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYS++TRF ICNY++RII+PLASRC+KFRFK L + RV I
Sbjct: 153 MTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVREI 212
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-------------------S 267
++EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 213 ADKEGVRLEEGAVEALIKCSEGDLRKAITYLQSAARLVGAVSQEGEERDNADKMDVDEKM 272
Query: 268 ITSKDLISVSGVIPPEVVEGLFAV----CRSGDFDLANKEVNNIIAEGYPASLLLSQLFD 323
+T + ++GVIP +E L R ++ +K V +++A+G+ +QL+
Sbjct: 273 VTVSSVEDIAGVIPDNTIEKLVKAMQPRSRGVVYEAVSKVVVDMVADGWSG----TQLYQ 328
Query: 324 VVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA---SNVI 368
++ +E I+D + +I +E DK LVDGADE+L +LD++ SN++
Sbjct: 329 TIINSELIADSHKNKIVALFSEADKRLVDGADEHLTILDLSLRISNIL 376
>gi|354544379|emb|CCE41102.1| hypothetical protein CPAR2_300910 [Candida parapsilosis]
Length = 357
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 230/343 (67%), Gaps = 21/343 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+A QE V+VL + T N PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 15 PWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + + YPCPPYKIIILDEADSM
Sbjct: 75 NLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPTPEDLKNYPCPPYKIIILDEADSM 134
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETY+ +TRF +CNYI+RII+PLASRC+KFRFK L+ E +R+ +I
Sbjct: 135 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNSENSLNRLKYIA 194
Query: 228 NEEGLNLDAE-----ALSTLSSISQGDLRRAITYLQGAARLFGS--------------SI 268
NEE LNLD L+ + IS GDLR+AITYLQ A++L S I
Sbjct: 195 NEEHLNLDKSQGEDAVLNEVLRISNGDLRKAITYLQSASKLSTSLQLEDDEDGDGKAGLI 254
Query: 269 TSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET 328
T + + +GV+P ++++ L RS + + VN++I+ G+ A L+ QL +V+V
Sbjct: 255 TKQSIRETAGVLPDDLIDNLVKTIRSKNEEKLVAVVNDVISSGWSAQQLIDQLHEVLVMD 314
Query: 329 EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+ I+ + +I L + DK L G DE++QLL++ V + +
Sbjct: 315 DSINSLVKNQIALILFDTDKKLNFGTDEHIQLLNLVLQVSKII 357
>gi|443896109|dbj|GAC73453.1| replication factor C, subunit RFC4 [Pseudozyma antarctica T-34]
Length = 383
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 182/364 (50%), Positives = 233/364 (64%), Gaps = 31/364 (8%)
Query: 19 FTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE 78
F Q+ + ++ + ++ K K+A + +PWVEKYRPK + +V QE V VL TL
Sbjct: 2 FLQQATKAHNASQAAQ---KEKLAKEKAARRPWVEKYRPKTIDEVTAQEHTVAVLKKTLM 58
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ N PHMLFYGPPGTGKT+T LA+A QLFGPEL K+RVLELNASD+RGI VVR KIK FA
Sbjct: 59 SNNLPHMLFYGPPGTGKTSTILALARQLFGPELMKTRVLELNASDERGITVVREKIKNFA 118
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+AV + + G+PCPP+KIIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++RI
Sbjct: 119 KLAVTNPKE--GFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRI 176
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYL 257
IEPLASRC+KFRF+ L +R+ I N E + D E L TL S GDLRRAITYL
Sbjct: 177 IEPLASRCSKFRFRSLDTSSTKARLEMIANTEAVTFEDGEVLDTLIGTSDGDLRRAITYL 236
Query: 258 QGAARLFG------SSITSKDLISVSGVIPPEVVE------GLFAVCRS-GD-------- 296
Q A+RL S++TS ++ ++GV+P V+ G+ A S GD
Sbjct: 237 QSASRLHSVAGDDKSAVTSASIVEIAGVVPSRVISSLADAVGIEAYAGSDGDVDMDAGAK 296
Query: 297 ----FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVD 352
FD EV I EGY + LL QL D V+ + +A+ +AE+DKCL D
Sbjct: 297 KRDAFDHIRHEVRVITREGYSITQLLVQLHDYVIGHPTLLAMIKAKAALLMAEMDKCLTD 356
Query: 353 GADE 356
GADE
Sbjct: 357 GADE 360
>gi|336464731|gb|EGO52971.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2508]
Length = 387
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 180/369 (48%), Positives = 237/369 (64%), Gaps = 38/369 (10%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R + PWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AHPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTME YSK+TRF ICNY++RII+PLASRC
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMEMYSKITRFCLICNYVTRIIDPLASRC 191
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+KFRFK L + R+ I EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLVGA 251
Query: 267 -SITSKD-----------------LISV------SGVIPPEVVEGLFAVCRS----GDFD 298
+ T KD L++V +GVIP + ++ L R +
Sbjct: 252 VAATGKDGEQKETEGDDEMEVDAKLVTVKVVEDIAGVIPDDTIQRLLEAMRPRAGVDTYP 311
Query: 299 LANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYL 358
K V ++A+G+ A ++QL+ VV E I D Q+ +I +EVDK LVDGADE+L
Sbjct: 312 AVAKVVEEMVADGWSAGQTMTQLYQAVVFDEMIPDVQKNKIVMVFSEVDKRLVDGADEHL 371
Query: 359 QLLDVASNV 367
+LD+A +
Sbjct: 372 SVLDLALRI 380
>gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ER-3]
Length = 389
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 178/350 (50%), Positives = 233/350 (66%), Gaps = 32/350 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 33 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 93 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDE 152
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L SR+
Sbjct: 153 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRL 212
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
I E L L + TL S+GDLRRAITYLQ AARL GS
Sbjct: 213 EKIARVEKLKLADGCVETLIRCSEGDLRRAITYLQSAARLVGSVGGKDGGGDEEMTDVGA 272
Query: 268 -----ITSKDLISVSGVIPPEVVEGLFAVC-----RSGDFDLANKEVNNIIAEGYPASLL 317
IT++ + ++GV+P ++++ L RS D+AN V +I+A+G+ AS +
Sbjct: 273 GEDGVITARIIEEIAGVVPDDIIDRLIKALQPKKGRSSYEDVANV-VTDIVADGWSASQI 331
Query: 318 LSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
L+QL+ ++V + I D Q+ + +E DK L+DGADE+L +LD+A +
Sbjct: 332 LTQLYQIIVFDDSIPDIQKNSLVLVFSEFDKRLIDGADEHLAILDLALRI 381
>gi|67525023|ref|XP_660573.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
gi|40744364|gb|EAA63540.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
Length = 754
Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 177/348 (50%), Positives = 229/348 (65%), Gaps = 29/348 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLF 107
QPWVEKYRPK + DVA Q+ + T + A PHMLFYGPPGTGKT+T LA+A LF
Sbjct: 400 QPWVEKYRPKTLDDVAAQDHTTKTWARTNQAALQLPHMLFYGPPGTGKTSTILALAKSLF 459
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILD 162
GP LY+SR+LELNASD+RGI +VR K+K FA V + + YPCPP+KIIILD
Sbjct: 460 GPALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILD 519
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFKPL R
Sbjct: 520 EADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDR 579
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK----------- 271
+ I E L+L+ + L S S GDLRRAITYLQ AARL G++ +K
Sbjct: 580 LAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARLVGAAKAAKDGDEDEEMKDQ 639
Query: 272 --DLISVS------GVIPPEVVEGLFAVC---RSGD-FDLANKEVNNIIAEGYPASLLLS 319
D+I+VS GV+P V++GL R G ++ +K V I+A+G+ A+ +L
Sbjct: 640 GSDMITVSTIEEIAGVVPESVLDGLIQSLQPKRMGSPYEAVSKVVTEIVADGWSATQILL 699
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
QL+ +V + I D Q+ +I +E+DK LVDGADE+L +LDVA +
Sbjct: 700 QLYRRMVYNDAIPDIQKNKIVLVFSEMDKRLVDGADEHLSILDVALKI 747
>gi|426200510|gb|EKV50434.1| hypothetical protein AGABI2DRAFT_200125 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/335 (52%), Positives = 230/335 (68%), Gaps = 20/335 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE + VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 25 QPWVEKYRPKTIEDVSAQEHTIAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +K+RVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGK--TYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF PL E +SR+
Sbjct: 143 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRL 202
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-----SITSKDLISVSG 278
+I EE +++D + L ++S GDLRRAITYLQ A+RL S ++ D+ ++G
Sbjct: 203 TYIAKEEQIDVDTSVIDALITVSNGDLRRAITYLQSASRLSSSSESPENLRPYDIQEIAG 262
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
V+P + +F K V II EGY A+ +L QL D+V ++ +Q++
Sbjct: 263 VVPDTF--------KKSNFTAIQKNVKAIIREGYSATQILIQLHDIVALHPVLNSKQKSE 314
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373
AE DK L DG+DE L +L++A+ V +AV +
Sbjct: 315 CALVFAEADKALCDGSDEELWVLEIATRVNKAVTS 349
>gi|358395863|gb|EHK45250.1| hypothetical protein TRIATDRAFT_151487 [Trichoderma atroviride IMI
206040]
Length = 381
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 171/344 (49%), Positives = 231/344 (67%), Gaps = 24/344 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 31 AQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELY 90
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEAD 165
GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIIILDEAD
Sbjct: 91 GPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIIILDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 151 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLES 210
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS------------------ 267
I EG+ L+ A+ L S+GDLR+AIT+LQ AARL G+
Sbjct: 211 IAEAEGVTLEDGAIDALIKCSEGDLRKAITFLQSAARLVGAKPLEKDGEGDEAMDVDKRP 270
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGD----FDLANKEVNNIIAEGYPASLLLSQLFD 323
+T K + ++GVIP + L R + +K V +++A+G+ A +++QL+
Sbjct: 271 VTVKIVEDIAGVIPGSTINDLVKAMRPSTSAEAYRSISKVVEDLVADGWSAGQVVNQLYQ 330
Query: 324 VVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+V E + D Q+ +I +EVDK LVDGADE+L +LD+A +
Sbjct: 331 EIVFDEIVPDVQKNKIVLVFSEVDKRLVDGADEHLSILDLAMRI 374
>gi|342876153|gb|EGU77811.1| hypothetical protein FOXB_11675 [Fusarium oxysporum Fo5176]
Length = 382
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/344 (48%), Positives = 232/344 (67%), Gaps = 24/344 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 32 TQPWVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELY 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEAD 165
GP++ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIIILDEAD
Sbjct: 92 GPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPAPGYKDKYPCPPFKIIILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 152 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKRRLEE 211
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS------------------S 267
I +EG+ L+ A+ L S+GDLR+AIT+LQ AARL + +
Sbjct: 212 IAEKEGVALEDGAVDALIKCSEGDLRKAITFLQSAARLVSANAPDKEAEGDEVMDVDKKA 271
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLLLSQLFD 323
+T K + ++GVIP ++ L R + + + V ++A+G+ A +++QL+
Sbjct: 272 VTVKIVEDIAGVIPDTTIDDLVKAIRPKRSGSSYQIISDVVEKLVADGWSAGQVVNQLYQ 331
Query: 324 VVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ E I D Q+ +I +EVDK LVDGADE+L +LD++ +
Sbjct: 332 ALTYDETIPDAQKNKIVLVFSEVDKRLVDGADEHLSILDLSVRI 375
>gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 346
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 169/323 (52%), Positives = 227/323 (70%), Gaps = 8/323 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVE+YRPK ++DV+HQ E++ L N +ET PH+LFYGPPGTGKT+ ALA+ QLF P
Sbjct: 16 PWVERYRPKSLQDVSHQGEIISTLKNAVETNRLPHLLFYGPPGTGKTSVALALCRQLFEP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ RVLELNASD+RGI+VVR KIK FA++A+ + + YP PP+KIIILDEAD++T
Sbjct: 76 SQLRRRVLELNASDERGISVVRDKIKHFASLAIDTETTK-KYPNPPFKIIILDEADTVTR 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR +E YSKVTRF ICNY++RIIEPLASRCAKFRF+PL E M +R+ +I +E
Sbjct: 135 DAQAALRRVIEAYSKVTRFILICNYVTRIIEPLASRCAKFRFQPLPVESMKARIKYIAHE 194
Query: 230 EGLNL----DAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLIS-VSGVIPP 282
E + E + + ++SQGD+RRA+T LQ A L G + + KD I+ ++G+ PP
Sbjct: 195 EHCQFEEGKEEEVVDEILTLSQGDMRRAVTTLQSAHSLSGGAGEVIKKDSIAEMAGLPPP 254
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
+++GL V R+G FD K V +I+ +GY A LLS L ++ + + DE +A+I
Sbjct: 255 ALIDGLIEVLRTGKFDDMKKYVMDIVLDGYSAEYLLSALMAKIIVLDGVEDEAKAKIAIQ 314
Query: 343 LAEVDKCLVDGADEYLQLLDVAS 365
+A DK L+DG+DE LQLL V S
Sbjct: 315 VATSDKNLIDGSDETLQLLTVCS 337
>gi|409082644|gb|EKM83002.1| hypothetical protein AGABI1DRAFT_69120 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 372
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/350 (51%), Positives = 237/350 (67%), Gaps = 27/350 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 25 QPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +K+RVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGK--TYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF PL E +SR+
Sbjct: 143 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRL 202
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK-----DLISVSG 278
+I EE +++D + L ++S GDLRRAITYLQ A+RL SS +++ D+ ++G
Sbjct: 203 TYIAKEEQIDVDTSVIDALITVSNGDLRRAITYLQSASRLSSSSESTENLRPYDIQEIAG 262
Query: 279 VIPPEVV------------EGLFAV---CRSGDFDLANKEVNNIIAEGYPASLLLSQLFD 323
V+P V+ +G V + +F K V II EGY A+ +L QL D
Sbjct: 263 VVPDTVINQFARTIGIEIDDGDMNVDEEFKKSNFTAIQKNVKAIIREGYSATQILIQLHD 322
Query: 324 VVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373
+V ++ +Q++ AE DK L DG+DE L +L++A+ V +AV +
Sbjct: 323 IVALHPVLNSKQKSECALVFAEADKALCDGSDEELWVLEIATRVNKAVTS 372
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/323 (52%), Positives = 220/323 (68%), Gaps = 7/323 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S +PWVEKYRP+ ++DVA Q+ +RVL L AN PHMLFYGPPGTGKT+T LA++ Q
Sbjct: 4 ESIKPWVEKYRPRTIEDVAAQDHTIRVLKKQLGNANLPHMLFYGPPGTGKTSTILALSRQ 63
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG +L KSRVLELNASD+RGINVVR KIK FA A + P YKIIILDEAD
Sbjct: 64 LFGQDLVKSRVLELNASDERGINVVREKIKNFAKQAPKAS---TSASVPAYKIIILDEAD 120
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK TRF +CNY++RIIEP+ASRC+KFRFKPL E +R+ +
Sbjct: 121 SMTQDAQSALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDESDSKARLEY 180
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGVIPP 282
I EE + L+ + L + GDLR+AITYLQ AARL S+IT + ++G IP
Sbjct: 181 IAQEENIPLNEGVIDALIDNTHGDLRQAITYLQSAARLHQASNSAITVDTITEIAGTIPE 240
Query: 283 EVVEGLFAVCRS-GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
+++ + VC + +F + I GY ++ +L QL D +E ISD +++
Sbjct: 241 NIIDNIIQVCSNKKNFKEIQSTIKQIHLFGYASAQVLLQLHDKFIENTSISDTSKSKAIL 300
Query: 342 CLAEVDKCLVDGADEYLQLLDVA 364
+AE DK L DGAD+ LQLL++A
Sbjct: 301 SIAEADKALTDGADDELQLLNLA 323
>gi|358388819|gb|EHK26412.1| hypothetical protein TRIVIDRAFT_63722 [Trichoderma virens Gv29-8]
Length = 378
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/346 (50%), Positives = 234/346 (67%), Gaps = 31/346 (8%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 31 AQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELY 90
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEAD 165
GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIIILDEAD
Sbjct: 91 GPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIIILDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 151 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLES 210
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD------------- 272
I EG+ L+ A+ L S+GDLR+AIT+LQ AARL G+ ++ KD
Sbjct: 211 IAEAEGVTLEDGAVDALIKCSEGDLRKAITFLQSAARLVGAKLSEKDSDGDDSMDVDKRP 270
Query: 273 -----LISVSGVIPPEVVEGLFAVCR---SGD-FDLANKEVNNIIAEGYPASLLLSQ--L 321
+ ++GVIP V+ L R SG+ + +K V +++A+G+ A +L Q +
Sbjct: 271 VTVKIVEDIAGVIPGATVDDLVKAMRPKSSGETYQSISKVVEDLVADGWSAGQVLYQELV 330
Query: 322 FDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
FD E I D Q+ +I +EVDK LVDGADE+L +LD++ +
Sbjct: 331 FD-----ETIPDIQKNKIVLVFSEVDKRLVDGADEHLSVLDLSMRI 371
>gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 389
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/350 (50%), Positives = 233/350 (66%), Gaps = 32/350 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 33 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 93 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDE 152
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L SR+
Sbjct: 153 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRL 212
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
I E L L + TL S+GDLRRAITYLQ AARL GS
Sbjct: 213 EKIARVEKLKLADGCVETLIRCSEGDLRRAITYLQSAARLVGSVGGKDGGGDEEMTDVGA 272
Query: 268 -----ITSKDLISVSGVIPPEVVEGLFAVC-----RSGDFDLANKEVNNIIAEGYPASLL 317
IT++ + ++GV+P ++++ L RS D+A+ V +I+A+G+ AS +
Sbjct: 273 GEDGVITARIIEEIAGVVPDDIIDRLIKALQPKKGRSSYEDVASV-VTDIVADGWSASQI 331
Query: 318 LSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
L+QL+ ++V + I D Q+ + +E DK L+DGADE+L +LD+A +
Sbjct: 332 LTQLYQIIVFDDSIPDIQKNSLVLVFSEFDKRLIDGADEHLAILDLALRI 381
>gi|344299747|gb|EGW30100.1| replication factor C, subunit RFC4 [Spathaspora passalidarum NRRL
Y-27907]
Length = 346
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/331 (52%), Positives = 228/331 (68%), Gaps = 9/331 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA QE V +L TL TAN PHMLFYGPPGTGKT+T LA++ QLFGP
Sbjct: 16 PWVEKYRPKNLDDVASQEHAVAILKRTLATANLPHMLFYGPPGTGKTSTILALSKQLFGP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
L KSRVLELNASD+RGIN+VR+KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 76 NLSKSRVLELNASDERGINIVRSKIKNFARLTISNPTPEDLANYPCPPYKIIILDEADSM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS +TRF ICNYI+RII+PLASRC+KFRFK L+ + +R+ +I
Sbjct: 136 TNDAQSALRRTMETYSGMTRFCLICNYITRIIDPLASRCSKFRFKLLNNDDGLNRLKYIA 195
Query: 228 NEEGLNLDAE--ALSTLSSISQGDLRRAITYLQGAARLFGS-----SITSKDLISVSGVI 280
+E L LD E L + IS GDLR+AITYLQ A++L S I+ K + +GV+
Sbjct: 196 EQEDLTLDQEEPVLQQVLDISGGDLRKAITYLQSASKLSNSYDEHQEISGKLIRETAGVL 255
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
E+++ L V + + + VN II +G+ L+SQL D ++ + I + +I
Sbjct: 256 YEEIIDELVNVIKGKNHTQISNYVNEIILQGWSIQQLISQLHDKLILDDSIDSLTKNQIA 315
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
L E DK L +G+DE++QLL+++ + + +
Sbjct: 316 INLFETDKRLNNGSDEHIQLLNLSLQISKVM 346
>gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis]
gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis]
Length = 354
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 178/354 (50%), Positives = 233/354 (65%), Gaps = 9/354 (2%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K + S + V+R+ P PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 7 TGKSGASSGSDKPQGGTVERRKPPA-----PWVEKYRPRSVDDVVEQSEVVAVLRKCVEG 61
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
A+ P+ML YGPPGTGKT+T LA A Q+FG ++YK R+LELNASD+RGINVVRTKIK F+
Sbjct: 62 ADLPNMLLYGPPGTGKTSTILAAARQIFG-DMYKDRILELNASDERGINVVRTKIKNFSQ 120
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
++ S R G P PP+KIIILDEADSMT AQ+ALRRTME S TRF ICNY+SRII
Sbjct: 121 LS-ASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRII 179
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
P+ SRC+KFRFKPL EE + +R+ HIC E + +D +A T+ IS GDLRRAIT LQ
Sbjct: 180 VPITSRCSKFRFKPLGEEKIIARLQHICELESVKIDPDAYKTIVKISGGDLRRAITTLQS 239
Query: 260 AARLFGS--SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLL 317
RL GS +I + DL +SGVIP +++ VCRSG+++ + V +I Y +
Sbjct: 240 CFRLQGSEHTINTADLFEMSGVIPDYLLDDFMDVCRSGNYERLEQFVRDIGYSAYSVGQM 299
Query: 318 LSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+ QL + +V +++D Q+A+IC+ L E L DG EYLQ++D+ +I A+
Sbjct: 300 MEQLVEFIVHHPNLTDPQKAKICEKLGECCYRLQDGGSEYLQIMDLGCCIILAL 353
>gi|345566715|gb|EGX49657.1| hypothetical protein AOL_s00078g146 [Arthrobotrys oligospora ATCC
24927]
Length = 387
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 168/340 (49%), Positives = 228/340 (67%), Gaps = 25/340 (7%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV Q+ V VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 36 PWVEKYRPKTLSDVTAQDHTVSVLRRTLQSSNLPHMLFYGPPGTGKTSTILALAKELYGP 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADSM 167
EL K+RVLELNASD+RGI++VR K+K FA +AV + YPCPPYKIIILDEADSM
Sbjct: 96 ELMKTRVLELNASDERGISIVREKVKNFAKIAVSTTTAANASKYPCPPYKIIILDEADSM 155
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFKPL E R+ I
Sbjct: 156 THDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEGNTRLRLSSIA 215
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS------------------SIT 269
EG+ + TL ++ GDLR+AIT+LQ AA+L G+ IT
Sbjct: 216 EAEGVKYQEGVVDTLIKVADGDLRKAITFLQSAAKLHGAVKERTGDDMEVDSGAKGGEIT 275
Query: 270 SKDLISVSGVIPPEVVEGLFAVCR-----SGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
+ + ++GVIP + ++ L + V +I+A+G+ A+ +L QL++
Sbjct: 276 VRSIEEIAGVIPEKTIDDLMQSMEPRPHGQAVYTPVATIVQDIVADGWSAAQVLLQLYNR 335
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
+V ++ ++ Q+ +I +E+DK LVDGADE+L +LD++
Sbjct: 336 LVFSDMLTGNQKNQIVAIFSEIDKRLVDGADEHLVILDMS 375
>gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
Length = 354
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 178/354 (50%), Positives = 232/354 (65%), Gaps = 9/354 (2%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K + S + V+R+ P PWVEKYRP V DV Q EVV VL +E
Sbjct: 7 TGKSGASSGSDKPQGGTVERRKPPA-----PWVEKYRPSSVDDVVEQSEVVAVLRKCVEG 61
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
A+ P+ML YGPPGTGKT+T LA A Q+FG ++YK R+LELNASD+RGINVVRTKIK F+
Sbjct: 62 ADLPNMLLYGPPGTGKTSTILAAARQIFG-DMYKDRILELNASDERGINVVRTKIKNFSQ 120
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
++ S R G P PP+KIIILDEADSMT AQ+ALRRTME S TRF ICNY+SRII
Sbjct: 121 LS-ASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRII 179
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
P+ SRC+KFRFKPL EE + +R+ HIC E + +D +A T+ IS GDLRRAIT LQ
Sbjct: 180 VPITSRCSKFRFKPLGEEKIIARLQHICELESVKIDPDAYKTIVKISGGDLRRAITTLQS 239
Query: 260 AARLFGS--SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLL 317
RL GS +I + DL +SGVIP +++ VCRSG+++ + V +I Y +
Sbjct: 240 CFRLQGSEHTINTADLFEMSGVIPDYLLDDFMDVCRSGNYERLEQFVRDIGYSAYSVGQM 299
Query: 318 LSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+ QL + +V +++D Q+A+IC+ L E L DG EYLQ++D+ +I A+
Sbjct: 300 MEQLVEFIVHHPNLTDPQKAKICEKLGECCYRLQDGGSEYLQIMDLGCCIILAL 353
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 168/329 (51%), Positives = 227/329 (68%), Gaps = 6/329 (1%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
++ ++PWVEKYRPK+++DV Q V+VL TLE+AN PHMLFYGPPGTGKT+T LA+
Sbjct: 19 IEQNKPWVEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALTK 78
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILD 162
+LFGPEL K+RVLELNASD+RGI++VR K+K FA + V + + +PCPPYKIIILD
Sbjct: 79 ELFGPELMKTRVLELNASDERGISIVREKVKNFARLTVTTPSKEDLERHPCPPYKIIILD 138
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFKPL +R
Sbjct: 139 EADSMTADAQSALRRTMETYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNSNALTR 198
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR----LFGSSITSKDLISVSG 278
+ +I +EE L L AL + IS+GDLR+ IT LQ A+ L + IT+ + ++G
Sbjct: 199 LQYIASEESLTLADGALDKILDISEGDLRKGITLLQSVAKAVAYLDNAEITTSQVEELAG 258
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
V+P V+ L S D VN+ I G+ A+ ++SQL D V+ +++ E + +
Sbjct: 259 VVPEPVLLELVNKIESKDLKEIINYVNSFIKSGWCAASVISQLHDYYVKNDELDTEFKNK 318
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ L E D L +G +E+LQLL++A +
Sbjct: 319 LFLLLFETDSRLANGTNEHLQLLNLAVKI 347
>gi|340517381|gb|EGR47625.1| predicted protein [Trichoderma reesei QM6a]
Length = 351
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 173/325 (53%), Positives = 224/325 (68%), Gaps = 18/325 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 32 QPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYG 91
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADS 166
PE+ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIIILDEADS
Sbjct: 92 PEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPHYKDKYPCPPFKIIILDEADS 151
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+ I
Sbjct: 152 MTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLESI 211
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
EG+ L+ A+ TL S+GDLR+AITYLQ AARL I +GVIP +
Sbjct: 212 AEAEGVALEDGAVDTLIKCSEGDLRKAITYLQSAARLIVEDI--------AGVIPDATIG 263
Query: 287 GLFAVCR---SGD-FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
L R SG + +K V +++A+G+ A QL+ +V E I D Q+ +I
Sbjct: 264 DLVKAMRPRTSGQTYQSISKVVEDLVADGWSA----GQLYQDLVFDETIPDIQKNKIVLV 319
Query: 343 LAEVDKCLVDGADEYLQLLDVASNV 367
+E+DK LVDGADE+L +LD+A +
Sbjct: 320 FSEIDKRLVDGADEHLSILDLAMRI 344
>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
Length = 352
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 228/343 (66%), Gaps = 9/343 (2%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
EK + +R+ P L WVEKYRP+ V DV Q EVV VL +E + P+ML YGP
Sbjct: 16 EKQQGASERRKPPTL-----WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGP 70
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA Q+FG ++YK+R+LELNASD+RGINVVRTKIKTF+ +A S R G
Sbjct: 71 PGTGKTSTILAAGRQIFG-DMYKNRILELNASDERGINVVRTKIKTFSQLA-ASSVRPDG 128
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
PCPP+KI+ILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII P+ SRC+KFR
Sbjct: 129 RPCPPFKIVILDEADSMTHAAQSALRRTMEKESQSTRFCLICNYVSRIIVPITSRCSKFR 188
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG--SSI 268
FK L EE + +R+ IC +EG+ +D +A ++ IS GDLRRAIT LQ RL G +I
Sbjct: 189 FKSLGEEKVIARLQFICEQEGVQIDPDAYKSIVKISGGDLRRAITTLQSCFRLKGPEHTI 248
Query: 269 TSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET 328
+ DL +SGVIP ++ VCRSGD++ K V +I Y ++ Q + +V
Sbjct: 249 NTADLFEMSGVIPDYYLDDYLEVCRSGDYERLEKFVRDIGYSAYSVGQMMEQFVEFIVNH 308
Query: 329 EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
++D Q+A+IC L E L DGA EYLQ++D+ +I A+
Sbjct: 309 PGLNDPQKAKICDKLGECCFRLQDGASEYLQIMDLGCCIILAL 351
>gi|226292668|gb|EEH48088.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 228/353 (64%), Gaps = 34/353 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE + VL TL+ +N PHMLFYGPPGTGKT+T LA++ LFG
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV-----AVGSGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + V YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L SR+
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRL 214
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK------------ 271
I E L L + TL S+GDLRRAIT++Q AARL GS + SK
Sbjct: 215 EEIARVEKLRLADGCIETLIRCSEGDLRRAITFMQSAARLVGSGLVSKPPPGKDEGGDED 274
Query: 272 -------------DLISVSGVIPPEVVEGLFAVCRSGD----FDLANKEVNNIIAEGYPA 314
+ ++GV+P ++V L + ++ +K V +I+A+G+ A
Sbjct: 275 MADAGDEGVITVRTIEEIAGVVPDDIVNRLVKALQPKKARLPYEEVSKVVTDIVADGWSA 334
Query: 315 SLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
S +L+QL+ ++V + I D + I +E DK L+DGADE+L +LD+A +
Sbjct: 335 SQMLTQLYQIIVFDDSIEDIHKNSIVMVFSEFDKRLIDGADEHLTILDLALRI 387
>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
Length = 356
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 170/322 (52%), Positives = 224/322 (69%), Gaps = 3/322 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V++QEEVV VL +L+ A+ P++LFYGPPGTGKT+T LA A LFG
Sbjct: 35 PWVEKYRPRTIDEVSYQEEVVAVLQKSLQGADLPNLLFYGPPGTGKTSTILAAARDLFG- 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++YK RVLELNASD+RGI VVR K+K F+ V S R G CPP+KI+ILDEADSMT
Sbjct: 94 DIYKDRVLELNASDERGIQVVREKVKIFSQRTVSS-VRPDGKQCPPFKIVILDEADSMTG 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +K TRF ICNY+SRIIEPL SRC+KFRFKPL E++ R+ HIC
Sbjct: 153 AAQAALRRTMEKETKSTRFCLICNYVSRIIEPLTSRCSKFRFKPLPREILVKRLEHICIA 212
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI-TSKDLISVSGVIPPEVVEGL 288
E ++ E L +L S+GDLRRAIT+LQ A L + T +D+ ++G +P +EGL
Sbjct: 213 ENMSCSEEVLESLIEASEGDLRRAITFLQSIANLNSEACPTIEDIYEITGRVPSCWIEGL 272
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
C SG +D +NN AEG+ S LL+QL + +V + ++S +Q+ IC+ LA D
Sbjct: 273 LEKCTSGSYDAMQSFINNFSAEGFSVSQLLNQLHERIVFSTELSSKQKNVICEKLAICDH 332
Query: 349 CLVDGADEYLQLLDVASNVIRA 370
L +GADE LQLLD++ ++ +
Sbjct: 333 RLAEGADEQLQLLDLSCTIMNS 354
>gi|344229660|gb|EGV61545.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 359
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/329 (51%), Positives = 217/329 (65%), Gaps = 15/329 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V+VL TL +AN PHMLFYGPPGTGKT+T LA+A L+GP
Sbjct: 23 PWVEKYRPKSLDDVASQDHTVKVLKRTLVSANLPHMLFYGPPGTGKTSTILALAKSLYGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
L+KSRVLELNASD+RGI++VR KIK FA + + S + YPCPPYKIIILDEADSM
Sbjct: 83 ILFKSRVLELNASDERGISIVRQKIKNFARLTISNPSPEDLEKYPCPPYKIIILDEADSM 142
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS VTRF +CNYI+RII+PLASRC+KFRFKPL+ R+ +I
Sbjct: 143 TNDAQSALRRTMETYSGVTRFCLVCNYITRIIDPLASRCSKFRFKPLNNSDALGRLQYIA 202
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-------------SITSKDLI 274
EG+ + L + IS GDLRRAITYLQ A RL S IT ++
Sbjct: 203 GHEGIEAEEGTLEEVLKISNGDLRRAITYLQSATRLHSSLKLLEEDISIGTNKITVDSIL 262
Query: 275 SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDE 334
V GV+ E+++ + + S D +E N++ +GY A ++ QL D ++ + S
Sbjct: 263 EVGGVVSDEIIDKILSTIESKDSKEIIEETRNVVLQGYSAQQVIDQLHDKLIMDDSRSSI 322
Query: 335 QQARICKCLAEVDKCLVDGADEYLQLLDV 363
+ + + L DK L G DE++QLL++
Sbjct: 323 VKNHVSQLLFTTDKRLNSGTDEHIQLLNL 351
>gi|444509952|gb|ELV09445.1| Replication factor C subunit 4 [Tupaia chinensis]
Length = 322
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 172/331 (51%), Positives = 218/331 (65%), Gaps = 47/331 (14%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G CPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKACPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+L I +E + + E
Sbjct: 207 QQQRLLDIAEKENVKISNE----------------------------------------- 225
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
VIP E ++G+FA C+SG FD V ++I EG+ AS L++QL D+VVE +D+SD+ ++
Sbjct: 226 VIPTETIDGIFAACQSGSFDKLEAVVKDLIDEGHAASQLINQLHDIVVENDDLSDKHKSI 285
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 286 ITEKLAEVDKCLADGADEHLQLISLCATVMQ 316
>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 167/315 (53%), Positives = 218/315 (69%), Gaps = 7/315 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V VL +L +AN PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 21 PWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGP 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+L KSRVLELNASD+RGI +VR K+K FA + V S + YPCPPYK+IILDEADSM
Sbjct: 81 DLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDEADSM 140
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRRTMETYS VTRF ICNYI+RII+PLA RC+KFRFKPL+ + R+ +I
Sbjct: 141 TYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLALRCSKFRFKPLANDNAVQRLRYIV 200
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-----SSITSKDLISVSGVIPP 282
+E LN+D + S L +IS GDLRRAITYLQ AARL ++I++ L ++GV+P
Sbjct: 201 QQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARLASTTTEETTISAATLREIAGVVPE 260
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
E ++ L D V +++ +G+ A +L QL ++ V ++ I E + R +
Sbjct: 261 EQLKILHNTLEDKDVSAITSVVGDLVLQGWGAQQVLDQLHELYVHSDSILTETKNRAARL 320
Query: 343 LAEVDKCLVDGADEY 357
+ E D+ L +GADE+
Sbjct: 321 MFETDRRLNNGADEH 335
>gi|150865911|ref|XP_001385318.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
gi|149387167|gb|ABN67289.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
Length = 369
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 166/346 (47%), Positives = 231/346 (66%), Gaps = 24/346 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DVA Q+ V+VL T+E+AN PHMLFYGPPGTGKT+T LA++ QL+GP
Sbjct: 24 PWVEKYRPRNLDDVASQDHAVKVLKKTMESANLPHMLFYGPPGTGKTSTILALSKQLYGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + + YPCPPYKIIILDEADSM
Sbjct: 84 NLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPSKEDLEKYPCPPYKIIILDEADSM 143
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRRT+E YS +TRF ICNY++RII+PLASRC+KFRF+ L+ E +R+ +I
Sbjct: 144 TNDAQAALRRTIENYSNITRFCLICNYVTRIIDPLASRCSKFRFRLLNNENALNRLKYIA 203
Query: 228 NEEGLNLDAE--ALSTLSSISQGDLRRAITYLQGAARLF--------------------G 265
+E ++LD+ L + IS GDLR+AIT+LQ A +L G
Sbjct: 204 EQEHISLDSNQLVLQEVLRISGGDLRKAITFLQSATKLHKSLAAPTEEDGDIQMLDEIPG 263
Query: 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV 325
+IT + + ++GVIP V+ + + +S + +VN+II++G+ A +L QL D
Sbjct: 264 EAITVESIQEIAGVIPENVILEVVSTIKSKNSKSIITQVNDIISQGFSAQQVLDQLHDKF 323
Query: 326 VETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+ + + + +I K L +DK L +G DE++QLLD+ + +++
Sbjct: 324 ILDDSLDSATKNKIAKTLFLIDKRLNNGTDEHIQLLDLCLQIAKSL 369
>gi|19115452|ref|NP_594540.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe 972h-]
gi|1350581|sp|Q09843.1|RFC2_SCHPO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|1039340|emb|CAA91237.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe]
Length = 340
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 169/343 (49%), Positives = 235/343 (68%), Gaps = 12/343 (3%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
+K+E E K+ S PWVE YRPK + V+ QE V+VL TL + N PHMLFYG
Sbjct: 9 KKTEQEAKK--------SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGS 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA++ +LFGP+L KSRVLELNASD+RGI+++R K+K+FA V + + G
Sbjct: 61 PGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN--KVDG 118
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
YPCPP+KIIILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++RII+PL+SRC+K+R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSIT 269
FKPL E M R+ I ++ ++++ ++ L S GD+R+AIT+LQ AA L G+ IT
Sbjct: 179 FKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPIT 238
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
+ ++G +P ++ L + + ++ AEGY ++LSQL DV+++ E
Sbjct: 239 ISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEE 298
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372
+S + +I L+EVDK L DGADE LQLLD+ S+ I VC
Sbjct: 299 TLSSPVKYKIFMKLSEVDKRLNDGADETLQLLDLLSS-ISVVC 340
>gi|327292807|ref|XP_003231101.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
gi|326466731|gb|EGD92184.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
Length = 386
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/345 (49%), Positives = 227/345 (65%), Gaps = 28/345 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DV Q+ + +L L +N PHMLFYG PGTGKT+T LA++
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISILQRNLNASNLPHMLFYGSPGTGKTSTILAMSKS 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR----RGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R YPCPP+KIIIL
Sbjct: 90 LFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPADPVYRSQYPCPPFKIIIL 149
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+P+ASRC+KFRFK L S
Sbjct: 150 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQS 209
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGSS------------ 267
R++ I E L+L+ + TL S GDLR+AIT++Q +ARL +GS
Sbjct: 210 RLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGSGKKKDSSDKEMEL 269
Query: 268 ------ITSKDLISVSGVIPPEVVEGLFAVC----RSGDFDLANKEVNNIIAEGYPASLL 317
IT + + VSG++P V+E + A R+ ++ + V +++A+G+ AS +
Sbjct: 270 DDVKPRITVRSIEEVSGLVPETVMERVVAALRPSKRTSKYEEISSLVADLVADGWSASQV 329
Query: 318 LSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
LSQ + V++ E ISD Q+ +I K +E DK LVDGADE+L LD
Sbjct: 330 LSQTYQAVLQDESISDAQKNQILKVCSEFDKRLVDGADEHLSTLD 374
>gi|453082922|gb|EMF10969.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 406
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 175/360 (48%), Positives = 235/360 (65%), Gaps = 45/360 (12%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP+ + D+A Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 35 QPWVEKYRPRSLDDIAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG----SGQRRGGYPCPPYKIIILDEA 164
PEL KSRVLELNASD+RGI++VR K+K FA + + + + R YPCPPYKIIILDEA
Sbjct: 95 PELVKSRVLELNASDERGISIVREKVKDFARMQLSNPPHAEEYRKKYPCPPYKIIILDEA 154
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT+DAQ+ALRRTMETYSK+TRF +CNY++RII+PLASRC+KFRFK L E R+
Sbjct: 155 DSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGNAGKRIE 214
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----------------- 267
I E + LD + TL S+GDLR+AIT+LQ AARL G++
Sbjct: 215 DIARLENVKLDEGVVETLLRCSEGDLRKAITFLQSAARLVGATSTAATDTKVGKRKRKTV 274
Query: 268 ------------------ITSKDLISVSGVIPPEVVEGLF-AVCRSGD----FDLANKEV 304
+T + ++GVIP ++ L AV +G + K V
Sbjct: 275 EEDEEEDAMDVDAAPAQPVTVASIEEIAGVIPHSTIDRLITAVTPTGRGTPPYGPIAKAV 334
Query: 305 NNIIAEGYPASLLLSQLFDVVVETEDIS-DEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
+++AEG+ AS +++QL++ VV T +++ D + +I +E DK LVDG+DE+L +LD+
Sbjct: 335 EDLVAEGWSASQVVTQLYERVVLTNEVTGDAAKNKIMLVFSETDKRLVDGSDEHLTVLDL 394
>gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis]
gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis]
Length = 354
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 168/324 (51%), Positives = 218/324 (67%), Gaps = 4/324 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V+DV Q EVV VL +E A+ P+ML YGPPGTGKT+T LA A Q+FG
Sbjct: 32 PWVEKYRPRSVEDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFG- 90
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++Y+ R+LELNASD+RGINVVRTKIK FA + S R G PCPP+KII+LDEADSMT
Sbjct: 91 DMYRDRILELNASDERGINVVRTKIKNFAQL-TASNVRPDGRPCPPFKIIVLDEADSMTH 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNY+SRII P+ SRC+KFRFK L E + +R+ HIC +
Sbjct: 150 AAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLKHICMQ 209
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLISVSGVIPPEVVEG 287
E +N+D +A ++ IS GD+RRAIT LQ RL GS +I + DL+ +SG+IP +E
Sbjct: 210 ENVNIDPDAYKSIVKISGGDMRRAITTLQSCYRLKGSDHTINTDDLLEMSGIIPEHYLED 269
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
VCRSG ++ V I Y ++ Q + +V ++D+Q+A IC L E
Sbjct: 270 YLEVCRSGKYERLEHFVREIGYSAYSVGQMMEQFVEFIVRCGSLTDKQKAIICDKLGECC 329
Query: 348 KCLVDGADEYLQLLDVASNVIRAV 371
L DG EYLQ++D+ +I A+
Sbjct: 330 YRLQDGGSEYLQIMDLGCTIILAL 353
>gi|50424927|ref|XP_461055.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
gi|49656724|emb|CAG89431.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
Length = 368
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 167/337 (49%), Positives = 223/337 (66%), Gaps = 23/337 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V++L TLE+AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 24 PWVEKYRPKNLDDVASQDHAVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 84 HLYKSRVLELNASDERGISIVRQKIKNFARLTISNPSKEDLENYPCPPYKIIILDEADSM 143
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME YS VTRF ICNYI+RII+PLASRC+KFRF+ L+ +R+ +I
Sbjct: 144 TNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRLLNNSNALNRLKYIV 203
Query: 228 NEEGLNLDAE-ALSTLSSISQGDLRRAITYLQGAARLFG--------------------S 266
+E + LD E L + +IS GDLR+AITYLQ AARL S
Sbjct: 204 GQEEIALDNEDVLEEVLNISNGDLRKAITYLQSAARLHASFNNRIDANGDIEMVDADTKS 263
Query: 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVV 326
IT + ++GV+P ++ + + S D +++ I+ +G+ A ++ QL D +
Sbjct: 264 KITQDSVQEIAGVLPEASLDQIISAIESLDTRTILQKIEEIVLQGWSAQQVVDQLHDKFI 323
Query: 327 ETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
+ + + +I K L E D+ L +G DE++QLL++
Sbjct: 324 LNDSLESSTKNKIAKILFETDRKLNNGTDEHIQLLNL 360
>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
Length = 352
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 171/339 (50%), Positives = 224/339 (66%), Gaps = 9/339 (2%)
Query: 38 KRKMAPVLQSSQ--PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
K+K+ P Q PWVEKYRP+++ DVA Q+ V VL TL+TAN PHMLFYGPPGTGK
Sbjct: 9 KQKLNPSDGKGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGK 68
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPC 153
T+T LA+ +L+GP L SRVLELNASD+RGI++VR K+K FA + V S YPC
Sbjct: 69 TSTILALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPC 128
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
PPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK
Sbjct: 129 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKA 188
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSI 268
L SR+ I NEE L + L + ISQGDLR+AIT LQ AA++ ++I
Sbjct: 189 LDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTI 248
Query: 269 TSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET 328
T K +SG I E+++ L V + D + +V + +G+ A+ L+QL + ++
Sbjct: 249 TLKHANELSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKN 308
Query: 329 EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
E E + ++ L + D L +GA E+LQ+L++A V
Sbjct: 309 ESYDTEFKNKVSWLLFDSDSKLTNGASEHLQMLNLAMKV 347
>gi|449299144|gb|EMC95158.1| hypothetical protein BAUCODRAFT_35150 [Baudoinia compniacensis UAMH
10762]
Length = 411
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 174/366 (47%), Positives = 231/366 (63%), Gaps = 51/366 (13%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP+ + DV Q+ V VL L+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 35 QPWVEKYRPRSLDDVTAQDHTVTVLRRMLQSSNLPHMLFYGPPGTGKTSTVLALAKQLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG-------QRRGGYPCPPYKIIIL 161
PEL KSRVLELNASD+RGI++VR K+K FA + + + + R YPCPPYKI++L
Sbjct: 95 PELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKIVVL 154
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L E
Sbjct: 155 DEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDEANAGK 214
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--------------- 266
R+ I E + L + TL S+GDLR+AIT+LQ AA+L G+
Sbjct: 215 RLEDIAKLENVRLQDGVIETLLRCSEGDLRKAITFLQSAAKLVGAVQAPAGTLPDKKRKR 274
Query: 267 ------------------------SITSKDLISVSGVIPPEVVEGLFAVCRSGD----FD 298
++T + + ++GVIP ++ LF + +
Sbjct: 275 AKIEDDEDEDAMDVDQQTTGAESPAVTVRSIEDIAGVIPDGTIDSLFTAMQPSSKGTIYG 334
Query: 299 LANKEVNNIIAEGYPASLLLSQLFD-VVVETEDISDEQQARICKCLAEVDKCLVDGADEY 357
K V ++IAEG+ AS +++QL+D VVV E D Q+ARI + VDK LVDG+DE+
Sbjct: 335 RVAKVVEDLIAEGWSASQIVNQLYDRVVVHDEATGDRQKARIVCIFSAVDKRLVDGSDEH 394
Query: 358 LQLLDV 363
L +LD+
Sbjct: 395 LTILDL 400
>gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
Length = 376
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 171/342 (50%), Positives = 224/342 (65%), Gaps = 29/342 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE V VL L + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 29 QPWVEKYRPKTIDDVSAQEHTVSVLQKALTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 88
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI++VR K+K FA A AV S + YPCPPYKIIILDE
Sbjct: 89 PDNFRSRVLELNASDERGISIVREKVKNFARQTPRAQAVASDGKE--YPCPPYKIIILDE 146
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR MET++++TRF +CNY++RIIEPLASRC+KFRF PL ++R+
Sbjct: 147 ADSMTQDAQGALRRIMETHARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSAAARL 206
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
+I E + + + TL S S GDLRRAITYLQ A+RL S+ IT D+ ++G
Sbjct: 207 SYIATNENVAVSPPVIDTLISTSGGDLRRAITYLQSASRLSSSTDPPTPITPVDIQEIAG 266
Query: 279 VIPPEVVEGLF----------------AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLF 322
V+P V++ + R G F L +V ++ +GY A+ +L+QL
Sbjct: 267 VVPDGVIDNFARAVGIEVDGSDAMDVDGLQRRG-FQLVQSKVKEVMRDGYSATQILTQLH 325
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
D+V+ +S +A+ AE DK L DGADE L +L+V
Sbjct: 326 DLVILHPTLSARNKAQSALVFAEADKALCDGADEELWILEVG 367
>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 395
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 176/377 (46%), Positives = 236/377 (62%), Gaps = 46/377 (12%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
T S +K +E R +QPWVEKYRPK + DV Q+ V VL TL+ +N PHM
Sbjct: 18 TASKNDKQTNETSR--------AQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHM 69
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
LFYGPPGTGKT+T LA+A +L+GPE KSRVLELNASD+RGI++VR K+K FA + + +
Sbjct: 70 LFYGPPGTGKTSTILALAKELYGPEFVKSRVLELNASDERGISIVREKVKDFARMQLTNP 129
Query: 146 Q--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
R YPCPP+K+I+LDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLA
Sbjct: 130 PPGYRDRYPCPPFKLIVLDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLA 189
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
SRC+KFRFK L + +RV I E ++L A+ L S+GDLR+AIT+LQ AARL
Sbjct: 190 SRCSKFRFKSLDQGNARARVEDIATREHVSLAPGAVDALIRCSEGDLRKAITFLQSAARL 249
Query: 264 FGS-------------------------------SITSKDLISVSGVIPPEVVEGLFAVC 292
G +IT + + ++GVIP +V+ L
Sbjct: 250 VGQEEEDKKEQKEQKEQKDQDKEEDSMDVDDSRPAITVQIVEEIAGVIPDDVISQLVQAI 309
Query: 293 R-----SGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
R + V +++A+G+ A +++QL+ VV E + D Q+ +I +EVD
Sbjct: 310 RPAAKGGSTYAAIASVVEDMVADGWSAGQVVTQLYQTVVYDETVPDAQKNKIVLVFSEVD 369
Query: 348 KCLVDGADEYLQLLDVA 364
K LVDGADE+L +LD+A
Sbjct: 370 KRLVDGADEHLSILDLA 386
>gi|326482375|gb|EGE06385.1| DNA replication factor C subunit Rfc2 [Trichophyton equinum CBS
127.97]
Length = 386
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 169/345 (48%), Positives = 228/345 (66%), Gaps = 28/345 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DV Q+ + VL L +N PHMLFYG PGTGKT+T LA++
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKS 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG----QRRGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R YPCPP+KIIIL
Sbjct: 90 LFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQYPCPPFKIIIL 149
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+P+ASRC+KFRFK L S
Sbjct: 150 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQS 209
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGS------------- 266
R++ I E L+L+ + TL S GDLR+AIT++Q +ARL +GS
Sbjct: 210 RLIEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGSGKKKDSSDKEMEL 269
Query: 267 -----SITSKDLISVSGVIPPEVVEGLFAVC----RSGDFDLANKEVNNIIAEGYPASLL 317
+IT + + VSG++P V++ + A R+ ++ + V +++A+G+ AS +
Sbjct: 270 DDVKPTITVRSIEEVSGLVPETVMQRVVAALRPSKRASKYEEISSLVADLVADGWSASQV 329
Query: 318 LSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
LSQ + V++ E I+D Q+ +I K +E DK LVDGADE+L LD
Sbjct: 330 LSQTYQAVLQDESIADVQKNQILKVCSEFDKRLVDGADEHLSTLD 374
>gi|224158698|ref|XP_002192375.1| PREDICTED: replication factor C subunit 4-like, partial
[Taeniopygia guttata]
Length = 294
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 160/290 (55%), Positives = 211/290 (72%), Gaps = 2/290 (0%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
P++LFYGPPGTGKT+T LA A +LFGP+L++ RVLELNASD+RGI V+R K+K FA +
Sbjct: 2 PNLLFYGPPGTGKTSTILAAATELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQL-T 60
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
SG G CPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL
Sbjct: 61 ASGSHSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPL 120
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
SRC+KFRFKPLS+ + R+L + +E + + EA+S L +S+GDLR+AIT+LQ A R
Sbjct: 121 TSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAITFLQSATR 180
Query: 263 LFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQL 321
L G IT K + ++GVIP E ++ L C+SG F+ N+I EG+ + L++QL
Sbjct: 181 LMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFAVAQLVNQL 240
Query: 322 FDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
D +VE+ED SD+Q++ I + LAEVDKCL DGADE+LQL+ + + V++ +
Sbjct: 241 HDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQL 290
>gi|258564276|ref|XP_002582883.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
gi|237908390|gb|EEP82791.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
Length = 395
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 225/353 (63%), Gaps = 34/353 (9%)
Query: 49 QPWVEKY--RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
QPWVEKY RPK + DVA Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA++ L
Sbjct: 36 QPWVEKYFSRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSL 95
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIIL 161
FGP+LY+SR+LELNASD+RGIN+VR K+K FA + + R YPCPP+KIIIL
Sbjct: 96 FGPKLYRSRILELNASDERGINIVRDKVKNFARTQLSHPPPQDSEYRKQYPCPPFKIIIL 155
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ ALRRTME +SK+TRF +CNY++RII+PLASRC+KFRFK L
Sbjct: 156 DEADSMTQDAQAALRRTMERFSKITRFCLVCNYVTRIIDPLASRCSKFRFKTLDGSAAGG 215
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-------------- 267
R+ I E L +D + L S+GDLRRA+TY+Q AARL GS
Sbjct: 216 RLEEIVKAEKLRVDDGVIDALIRCSEGDLRRAVTYMQSAARLVGSGLAGKSGKDEGGDEE 275
Query: 268 ---------ITSKDLISVSGVIPPEVVEGLFAVC---RSGD-FDLANKEVNNIIAEGYPA 314
IT +++ ++GV+P VV L + G ++ K V +I+A+G+ A
Sbjct: 276 MPDADSSGVITVQNVEEIAGVVPDNVVNRLIDAMQPKKGGSVYEGVAKVVTDIVADGWSA 335
Query: 315 SLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+LSQ++ V E I D Q+ I +E DK L+DGADE L +LD+A ++
Sbjct: 336 GQILSQMYQATVFNESIPDIQKNDIVMIFSEFDKRLIDGADEQLSILDLALSI 388
>gi|365981921|ref|XP_003667794.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
gi|343766560|emb|CCD22551.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Length = 354
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 165/338 (48%), Positives = 228/338 (67%), Gaps = 12/338 (3%)
Query: 38 KRKM------APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
KRK+ + L S+PWVEKYRPKQ+ D+ Q V VL TL++AN PHMLFYGPP
Sbjct: 10 KRKLDNTESSSSALHQSKPWVEKYRPKQLDDITAQGHAVSVLKKTLQSANLPHMLFYGPP 69
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-- 149
GTGKT+T LA+A +L+GPEL KSR+LELNASD+RGI++VR K+K FA + V +
Sbjct: 70 GTGKTSTILALAKELYGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLE 129
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KF
Sbjct: 130 NYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKF 189
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR--LFGS- 266
RFKPL R+ ++ EE + D + + + IS+GDLRRAIT LQ A++ L+
Sbjct: 190 RFKPLDATNSIGRLEYVAREESVQYDDDVMKCILDISEGDLRRAITLLQSASKRILYTGE 249
Query: 267 -SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV 325
+TS + ++GVIP +V + + D + + VN I G+ A+ +++QL D
Sbjct: 250 KQVTSASVKELAGVIPDDVFQVVIDKVSKNDVNETIEYVNEFIKSGWSAASVINQLHDYY 309
Query: 326 VETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
+ ++ + + + ++ L E+D L +G +E++QLL++
Sbjct: 310 ITNDEFNSDFKNKVSLILFEMDSKLANGTNEHIQLLNL 347
>gi|440640436|gb|ELR10355.1| hypothetical protein GMDG_04737 [Geomyces destructans 20631-21]
Length = 389
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 228/344 (66%), Gaps = 28/344 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHML+YGPPGTGKT+T LA++ L+G
Sbjct: 35 QPWVEKYRPKSLADVTAQDHTITVLQRTLQSSNLPHMLYYGPPGTGKTSTILALSRSLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SGQRRGGYPCPPYKIIILDEAD 165
P L+ SRVLELNASD+RGI++VR K+K FA + + G + Y CPPYKIIILDEAD
Sbjct: 95 PALFHSRVLELNASDERGISIVRKKVKDFARMQLSRPPGGNYQEQYLCPPYKIIILDEAD 154
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF +CNY++RII+PLASRC+KFRFK + E +R+
Sbjct: 155 SMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKRMGEGQAGTRLRE 214
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS------------------ 267
I +E + ++ + L S+GDLR+AIT+LQ AARL G++
Sbjct: 215 IAEKEKVPMEEGVVEALIKHSEGDLRKAITFLQSAARLVGAAGADGGEEVEEDAMDVDGV 274
Query: 268 ---ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLA----NKEVNNIIAEGYPASLLLSQ 320
+T K + ++GVIP ++ L + L +K V ++A+G+ AS +++Q
Sbjct: 275 QKVVTVKSIEDIAGVIPDRTIDSLVKAMQPSSSGLTYENISKVVTEMVADGWSASQVVTQ 334
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
L+ ++ E I+D + +I +E+DK L DGADE+L +LD+A
Sbjct: 335 LYQTIIYNESIADIHKNKIVMIFSEIDKRLADGADEHLSILDMA 378
>gi|315042534|ref|XP_003170643.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
gi|311344432|gb|EFR03635.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
Length = 386
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 168/345 (48%), Positives = 227/345 (65%), Gaps = 28/345 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DV Q+ + VL L +N PHMLFYG PGTGKT+T LA++
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKS 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG----SGQRRGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R YPCPP+KIIIL
Sbjct: 90 LFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPPDPAYRSQYPCPPFKIIIL 149
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+P+ASRC+KFRFK L +
Sbjct: 150 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQN 209
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGSS------------ 267
R++ I E L+L+ + TL S GDLR+AIT++Q +ARL +GS
Sbjct: 210 RLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGSGKKKDTSDKEMEL 269
Query: 268 ------ITSKDLISVSGVIPPEVVEGLFAVC----RSGDFDLANKEVNNIIAEGYPASLL 317
IT + + VSG++P V++ + A R+ +++ + V +++A+G+ AS +
Sbjct: 270 DDTKPRITVRSIEEVSGLVPETVMQQVIAALRPNKRTSNYEQISNLVADLVADGWSASQV 329
Query: 318 LSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
LSQ + V++ E ISD + +I K +E DK LVDGADE+L LD
Sbjct: 330 LSQTYQAVLQDESISDAHKNQILKVCSEFDKRLVDGADEHLSTLD 374
>gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
Length = 339
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 168/327 (51%), Positives = 227/327 (69%), Gaps = 4/327 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DVA Q+ VRVL TL++AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 13 PWVEKYRPKKLDDVASQDHAVRVLQKTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LY+SRVLELNASD+RGI++VR KIK FA + V S + YPCPPYKIIILDEADSM
Sbjct: 73 RLYRSRVLELNASDERGISIVRQKIKNFARLTVSNPSPEDLREYPCPPYKIIILDEADSM 132
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME YS VTRF ICNYI+RII+PLASRC+KFRF+ L E SR+ ++
Sbjct: 133 TNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRSLDGENALSRLRYVV 192
Query: 228 NEEGLNLDAEA-LSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVV 285
+E + L +++ L+ + ++S GDLR+AITYLQ A R ++S + +SGV+ +
Sbjct: 193 EQEHIPLASDSVLNDILAVSGGDLRKAITYLQSATRSGDAGGVSSAKIKEISGVVDDASM 252
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
E L R+ + + V + + EG+ A +QL DV + + +S +++ I + L E
Sbjct: 253 ETLVGAIRAKNPKQIAQVVKDTVLEGWSAQQTAAQLHDVFLLDDALSSQEKNDIARLLFE 312
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAVC 372
DK L G DE++QLL+++ + A+
Sbjct: 313 TDKRLNSGTDEHIQLLNLSLQIAGALA 339
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 171/342 (50%), Positives = 227/342 (66%), Gaps = 11/342 (3%)
Query: 38 KRKMAPVLQS--SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
KRK++ + S +QPWVEKYRPK++ DVA QE V VL TL +AN PHMLFYGPPGTGK
Sbjct: 9 KRKISSEVDSEQTQPWVEKYRPKKLDDVAAQEHAVTVLKRTLGSANLPHMLFYGPPGTGK 68
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPC 153
T+T LA+ +LFGP L KSRVLELNASD+RGI++VR K+K FA + V S + YPC
Sbjct: 69 TSTILALTKELFGPNLIKSRVLELNASDERGISIVREKVKNFARLTVSKPSKEDLEKYPC 128
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
PPYKIIILDEADSMT DAQ+ALRRTMETYS +TRF ICNY++RII+PLASRC+KFRFK
Sbjct: 129 PPYKIIILDEADSMTADAQSALRRTMETYSNITRFCLICNYVTRIIDPLASRCSKFRFKA 188
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSIT 269
L E R+ + EE +N L + IS GDLRRAIT LQ A++ S IT
Sbjct: 189 LDETNALDRLKFVAQEENVNYKENVLEKILEISSGDLRRAITLLQSASKTSTYTENSEIT 248
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
+ ++GV+P + + V S + D K ++ I G+ + +++QL + + +E
Sbjct: 249 VNLVEELAGVVPSPALNEIIEVVSSKNIDAVTKYLDKFIRNGWSGTSVVNQLHNHYITSE 308
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDV---ASNVI 368
D S + + ++ L E D L +G +E++QLL++ SN+I
Sbjct: 309 DYSADFKNKVSWILFETDSKLNNGTNEHIQLLNLLVKISNII 350
>gi|255731300|ref|XP_002550574.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
gi|240131583|gb|EER31142.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
Length = 354
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 168/336 (50%), Positives = 223/336 (66%), Gaps = 15/336 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D++ QE V+VLT T+ + N PHMLFYGPPGTGKT+T LA+A L+GP
Sbjct: 22 PWVEKYRPKSLSDISSQEHTVKVLTQTITSGNLPHMLFYGPPGTGKTSTILALAKTLYGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 82 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPSKEDLEKYPCPPYKIIILDEADSM 141
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETY+ +TRF ICNYI+RII+PL SRC+KFRFK L+ E R+ I
Sbjct: 142 TNDAQSALRRTMETYAGITRFVLICNYITRIIDPLTSRCSKFRFKLLNNENALLRLRFIA 201
Query: 228 NEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARLFGS--------SITSKDLISVSG 278
NEE L + L+ + IS GDLR+ ITYLQ AA+L + IT K + +G
Sbjct: 202 NEENLRYTGDDVLNEVLKISAGDLRKGITYLQSAAKLSSTFDDNDDKGIITVKTIRETAG 261
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
++ +V+ L + +S + + VN I G+ A +LL QL D+++ + + + +
Sbjct: 262 ILHDDVLNELIDIMKSKNVQKIIQAVNEIELNGWSAQILLDQLHDILILDDRLDSLAKNK 321
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM 374
I K E D+ L +G DE++QLL N+I V N+
Sbjct: 322 IAKFFFESDRKLNNGTDEHIQLL----NIILQVSNV 353
>gi|336367142|gb|EGN95487.1| hypothetical protein SERLA73DRAFT_60040 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379860|gb|EGO21014.1| hypothetical protein SERLADRAFT_372826 [Serpula lacrymans var.
lacrymans S7.9]
Length = 372
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 230/351 (65%), Gaps = 28/351 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 22 QPWVEKYRPKTIDDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +++RVLELNASD+RGI++VR KIK FA A V S + YPCPPYKIIILDE
Sbjct: 82 PDNFRNRVLELNASDERGISIVREKIKNFARQTPRAQMVASDGK--TYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF PL SSR+
Sbjct: 140 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSTSSRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
I E + L+ + +S L + S GDLRR+ITYLQ A+RL S+ IT+ D+ ++G
Sbjct: 200 SQIATAEHVVLEPDVISALINTSSGDLRRSITYLQSASRLSASTNPPTPITAGDIQEIAG 259
Query: 279 VIPPEVVEGL---FAVCRSGDFDLANK-------------EVNNIIAEGYPASLLLSQLF 322
V+P VV V GD D+ N +V ++ +GY AS ++SQL
Sbjct: 260 VVPDAVVHDFAKTLGVEIVGDMDVDNDGRKKTRGFDAVQAKVKELMRQGYSASQIVSQLH 319
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373
D+V+ + Q++ AE DK + DGADE L +L+V + +A+ +
Sbjct: 320 DIVILHPTLHARQKSICALAFAEADKAICDGADEELWILEVGLRIHKAISS 370
>gi|392573304|gb|EIW66444.1| hypothetical protein TREMEDRAFT_74703 [Tremella mesenterica DSM
1558]
Length = 490
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 168/335 (50%), Positives = 221/335 (65%), Gaps = 23/335 (6%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 147 QPWVEKYRPKTIDDVSSQENTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFG 206
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+L++SRVLELNASD+RGI VVR KIKTFA V++ S + YPCPP+K+IILDE
Sbjct: 207 PDLFRSRVLELNASDERGITVVREKIKTFARETPRHVSLSSDGK--TYPCPPFKLIILDE 264
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRR METYS++TRF +CNY++RIIEPLASRC+KFRFKPL++ +R+
Sbjct: 265 ADSMTHDAQSALRRIMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLAQGSSQARM 324
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
I EG++++ L + ++ GDLR+AIT+LQ A RL G++ I++ + +SG
Sbjct: 325 EMIVKAEGVDIEDGVLDRILELAGGDLRKAITFLQTAQRLHGATSPPTPISAMSIHEISG 384
Query: 279 VIPPEVVEGLFA-----------VCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE 327
V+P + L + FD V +I EG+ A +L QL D ++
Sbjct: 385 VVPDTTIHSLLRSMGVDPFSGIDLSIRSTFDTVRTAVKSISREGWSAGQVLEQLHDALIP 444
Query: 328 TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
I Q+++ +AE DK L +G DE LQLLD
Sbjct: 445 IPTIPAMQKSQAALAIAECDKGLCEGGDEELQLLD 479
>gi|296807688|ref|XP_002844229.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
gi|238843712|gb|EEQ33374.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
Length = 390
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 172/348 (49%), Positives = 227/348 (65%), Gaps = 31/348 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DVA Q+ + VL L +N PHMLFYG PGTGKT+T LA++
Sbjct: 31 QQTQPWVEKYRPKTLDDVAAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKS 90
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----GSGQRRGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGI++VR KIK FA + + R YPCPP+KI+IL
Sbjct: 91 LFGPALVRSRVLELNASDERGISIVREKIKDFARMHLSQPPADPAYRSQYPCPPFKIVIL 150
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+P+ASRC+KFRFK L S
Sbjct: 151 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAARS 210
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGSS------------ 267
R++ I E L+L+ + TL S GDLR+AIT++Q +ARL FGS
Sbjct: 211 RLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARFGSGKKKEVSDETAEA 270
Query: 268 ------ITSKDLISVSGVIPPEVVEGLFAVCRSG----DFDLANKEVNNIIAEGYPASLL 317
IT K + VSG++P V++ + A R +D + V +++A+G+ AS +
Sbjct: 271 KDTKSKITVKSIEEVSGLVPETVMDRVMAALRPNKRVSKYDEISNLVTDLVADGWSASQV 330
Query: 318 LSQLF---DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
LSQ F V++ E +SD Q+ +I K +E DK LVDGADE+L LD
Sbjct: 331 LSQCFKTYQAVLQDEAVSDVQKNQILKVCSEFDKRLVDGADEHLSTLD 378
>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
Length = 356
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 175/364 (48%), Positives = 230/364 (63%), Gaps = 16/364 (4%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK+ S N + T + E R+ P PWVEKYRP+ V DV Q EV
Sbjct: 6 KTGKSSSGNSSTDKQATNAPTE-------RRKPPA-----PWVEKYRPRSVDDVVEQSEV 53
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL +E A+ P+ML YGPPGTGKT+T LA A Q+FG ++Y+ R+LELNASD+RGINV
Sbjct: 54 VAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFG-DMYRDRILELNASDERGINV 112
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VRTKIK FA + S R G CPP+KII+LDEADSMT AQ ALRRTME S+ TRF
Sbjct: 113 VRTKIKNFAQL-TASNVRPDGRSCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFC 171
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
ICNY+SRII P+ SRC+KFRFK L E + +R+ HIC EG+ +D +A ++ IS GD
Sbjct: 172 LICNYVSRIIVPITSRCSKFRFKALGETQIIARLQHICELEGVRIDPDAYKSIVRISGGD 231
Query: 250 LRRAITYLQGAARLFGS--SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI 307
+RRAIT LQ RL G+ +I + DL+ +SG+IP +E VCRSG+++ V I
Sbjct: 232 MRRAITTLQSCYRLKGAEHTINTDDLLEMSGIIPEHYLEDYLEVCRSGNYERLEHFVREI 291
Query: 308 IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
Y ++ Q + +V ++D+Q+A IC L E L DG EYLQ++D+ +
Sbjct: 292 GYSAYSVGQMMDQFVEFIVRCGSLTDKQKAIICDKLGECCYRLQDGGSEYLQIMDLGCTI 351
Query: 368 IRAV 371
I A+
Sbjct: 352 ILAL 355
>gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
Length = 384
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 177/346 (51%), Positives = 225/346 (65%), Gaps = 29/346 (8%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K K+A +++PWVEKYRPK + +VA QE V VL TL + N PHMLFYGPPGTGKT+
Sbjct: 18 KEKLAKEKAANRPWVEKYRPKTIDEVAAQEHTVAVLKKTLLSNNLPHMLFYGPPGTGKTS 77
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
T LA+A QLFGPEL K+RVLELNASD+RGI VVR KIK FA +AV + + G+PCPP+K
Sbjct: 78 TILALARQLFGPELMKTRVLELNASDERGITVVREKIKNFAKLAVTNPKE--GFPCPPFK 135
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
IIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++RIIEPLASRC+KFRF+ L
Sbjct: 136 IIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTS 195
Query: 218 VMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYLQGAARLFG------SSITS 270
+R+ I + E + D+ L TL S S GDLRRAITYLQ A+RL S+ITS
Sbjct: 196 STKARLEMIASAESVAFRDSGVLDTLISTSDGDLRRAITYLQSASRLHSLTGEDKSAITS 255
Query: 271 KDLISVSGVIPPEVVE------GLFAVCRSGD--------------FDLANKEVNNIIAE 310
+ ++ ++GV+P V+ G+ A D F+ EV I E
Sbjct: 256 ESIVEIAGVVPNRVIASLADAIGIEAYSPDDDVEMQPTGGAKKRDTFERIRDEVRIITRE 315
Query: 311 GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE 356
GY + LL QL D V+ + +A+ +AE+DK L DGADE
Sbjct: 316 GYSITQLLLQLHDHVIGHPTSQAKIKAKAALLMAEMDKSLTDGADE 361
>gi|443723218|gb|ELU11749.1| hypothetical protein CAPTEDRAFT_223108 [Capitella teleta]
Length = 343
Score = 330 bits (845), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 162/325 (49%), Positives = 229/325 (70%), Gaps = 16/325 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRPK V +VA+QEEVV VL +E + P+ML YGPPGTGKT+T LA A LFG
Sbjct: 31 EPWVEKYRPKNVDEVAYQEEVVAVLRKAIEGLDLPNMLLYGPPGTGKTSTILAAAKGLFG 90
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
++Y+SR+LELN+SD+RGI+VVR K+KTF+ ++ G G+R G PCPP+KI+ILDEADSMT
Sbjct: 91 -DMYRSRILELNSSDERGISVVRDKVKTFSQLSAG-GKRPDGKPCPPFKIVILDEADSMT 148
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ+ALRRTME SK TRF ICNY+SRIIEP+A +++ R+ IC
Sbjct: 149 NAAQSALRRTMEKESKTTRFCLICNYVSRIIEPIA-------------DILQRRLKEICA 195
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEG 287
+E ++ EAL L S+GD+R+AIT LQ A+R G IT D+ +SGVIP ++++G
Sbjct: 196 KEDVSCSDEALEALMYTSEGDMRKAITTLQSASRFKAGEEITKNDIYEISGVIPNDIIDG 255
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ +C SG ++ + ++IAEG+ A+ ++ QL +++ + +SD Q++ I + LA VD
Sbjct: 256 IIVICHSGSYEQLESTIKDVIAEGHAATQVILQLHRSLIDNDRLSDAQKSVIFEKLAIVD 315
Query: 348 KCLVDGADEYLQLLDVASNVIRAVC 372
K L+DGADE+LQ++D+ S ++ VC
Sbjct: 316 KRLMDGADEFLQIMDLCSLIMNQVC 340
>gi|448098395|ref|XP_004198917.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359380339|emb|CCE82580.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 170/341 (49%), Positives = 221/341 (64%), Gaps = 20/341 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +VA QE V++L TLE+AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 19 PWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGP 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
L+KSRVLELNASD+RGI++VR K+K FA +AV + + YPCPPYK+IILDEADSM
Sbjct: 79 RLFKSRVLELNASDERGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSM 138
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRT+E YS VTRF ICNYI+RII+PL+SRC+KFRF L+ E SR+ +I
Sbjct: 139 TNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNENALSRIKYIV 198
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FG-----------------SSIT 269
+E LN+D + TL SIS GDLR+AIT+LQ A+RL F IT
Sbjct: 199 EKENLNVDEDVPETLLSISNGDLRKAITFLQSASRLSFALANPDDSEDRMHVDEEHGKIT 258
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
+ ++G+IP ++++ L + G+ V I G+ A +L QL D V
Sbjct: 259 KSAIQEIAGIIPDDILKRLVTIIEKGNTREIFNTVQEFILGGWSAQQVLDQLHDSYVMNH 318
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
+ E + +I L D L G DE++QLL+ V +A
Sbjct: 319 SLRPELKNKIALVLFSSDCKLNSGTDEHIQLLNFCLQVAKA 359
>gi|452979410|gb|EME79172.1| hypothetical protein MYCFIDRAFT_79709 [Pseudocercospora fijiensis
CIRAD86]
Length = 405
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 173/362 (47%), Positives = 229/362 (63%), Gaps = 47/362 (12%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 34 QPWVEKYRPKSLDDVAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG-------QRRGGYPCPPYKIIIL 161
PEL KSRVLELNASD+RGI++VR K+K FA + + + + R YPCPPYKII+L
Sbjct: 94 PELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKIIVL 153
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTMETYSK+TRF +CNY++RII+PLASRC+KFRFK L E
Sbjct: 154 DEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKLLDEGNAGR 213
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--------------- 266
R+ I E + L+ +TL S GDLR+AIT+LQ AARL G+
Sbjct: 214 RIEDIARLENVTLEEGVTNTLLRCSDGDLRKAITFLQSAARLVGAVQASTQPDKKRKRTK 273
Query: 267 -------------------SITSKDLISVSGVIPPEVVEGLFAVC-----RSGDFDLANK 302
IT + + ++GVIP +E L + +
Sbjct: 274 VEEDDDDADAMDIDAAPSPPITVQSIEEIAGVIPNNTIERLTTAMTPKPKSRAPYGPIAQ 333
Query: 303 EVNNIIAEGYPASLLLSQLFD-VVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLL 361
V +++AEG+ A+ ++SQL+D +V+ E + D + +I +E DK LVDG+DE+L +L
Sbjct: 334 AVEDLVAEGWSATQIVSQLYDKIVLGDETVGDGAKNKIMLTFSETDKRLVDGSDEHLTIL 393
Query: 362 DV 363
D+
Sbjct: 394 DL 395
>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
putative [Tribolium castaneum]
gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
Length = 355
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 167/327 (51%), Positives = 219/327 (66%), Gaps = 4/327 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V DV Q E V VL + A+ P++LFYGPPGTGKT+T LA A QLFG
Sbjct: 31 PWVEKYRPRTVSDVVEQSEAVSVLQQCISGADLPNLLFYGPPGTGKTSTILAAARQLFG- 89
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ R+LELNASD+RGI V+R K+KTFA + SG R G PCPP+KI+ILDEADSMT
Sbjct: 90 DYYRDRILELNASDERGIQVIRDKVKTFAQL-TASGTRPDGKPCPPFKIVILDEADSMTH 148
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNY+SRIIEPL SRC KFRFKPL+E ++ R+ IC +
Sbjct: 149 AAQAALRRTMEKESRSTRFCLICNYVSRIIEPLTSRCTKFRFKPLNEAMILERLSFICGK 208
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSGVIPPEVVEG 287
E + + L+ L S GD+RRAIT LQ A+L GS I+ D++ V+GV+P ++
Sbjct: 209 ENVECSDKTLAALVETSGGDMRRAITSLQSCAKLKGSGVPISIDDVLEVTGVVPERWLKK 268
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
VC++ D + + ++ E Y AS +L QL +V E +D+Q+A I + L V
Sbjct: 269 FLDVCKTKDQNKLQAFLKEMMFEAYAASQILEQLNQYIVNFEGFTDQQKAIIGQKLGVVS 328
Query: 348 KCLVDGADEYLQLLDVASNVIRAVCNM 374
L DG E++QLLD+ ++IRA CN+
Sbjct: 329 FKLQDGGSEFIQLLDLGCSIIRAFCNV 355
>gi|401625031|gb|EJS43057.1| rfc2p [Saccharomyces arboricola H-6]
Length = 353
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 162/324 (50%), Positives = 217/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVE+YRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVERYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKALDANNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
+I +E + DA L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 YISEQENVKCDAGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P EV+ + +SGDFD NK VN + G+ + +++QL + + + + +I
Sbjct: 263 VPKEVLMEIVDKVKSGDFDEINKHVNTFMKSGWSGASVVNQLHEYYITNDAFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSKLNNGTNEHIQLLNL 346
>gi|134057264|emb|CAK96427.1| unnamed protein product [Aspergillus niger]
Length = 388
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 169/348 (48%), Positives = 225/348 (64%), Gaps = 30/348 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPW RPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 35 QPWPHS-RPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRR-GGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + G G+ YPCPP+KIIILDE
Sbjct: 94 PSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDE 153
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 154 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERL 213
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---------------- 267
HI E L L+ + L + S+GD+RRAITY+Q AA+L G+
Sbjct: 214 EHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGAGRAGKKDEDEDEEMTDQ 273
Query: 268 ----ITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASLLLS 319
IT + + ++GV+P V++ L + ++ K V +IIA+G+ A+ LL
Sbjct: 274 ESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEAVAKVVTDIIADGWSATQLLL 333
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
QL+ VV + I D Q+ +I +++D+ LVDGADE+L +LDVA +
Sbjct: 334 QLYRRVVFNDAIPDIQKNKIVMVFSDMDRRLVDGADEHLSILDVALKI 381
>gi|396471841|ref|XP_003838965.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
gi|312215534|emb|CBX95486.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
Length = 434
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 240/401 (59%), Gaps = 76/401 (18%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV------------------------AVGS 144
P+L KSRVLELNASD+RGI++VR K+K FA A G+
Sbjct: 93 PDLLKSRVLELNASDERGISIVRQKVKDFARQQLSLAPSYSVMVEDKAAAGRGEDEAAGT 152
Query: 145 GQR-----RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
G++ R YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS+VTRF +CNY++RII
Sbjct: 153 GEKKMARYRDVYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRVTRFCLVCNYVTRII 212
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+PLASRC+KFRFK L + RV I EG+ LD L +++GDLR+AIT+LQ
Sbjct: 213 DPLASRCSKFRFKSLDQGNAVRRVADIARLEGVALDPGVAEELVRVAEGDLRKAITFLQS 272
Query: 260 AARLF-----------------------------------------GSSITSKDLISVSG 278
ARL G++++ + + ++G
Sbjct: 273 GARLVGAVQANVAAGTGRKKRVVEEGEGEGDEMDIDAPAAAAPSTAGTTVSLQAIAEIAG 332
Query: 279 VIPPEVVEGLF------AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDIS 332
VIPPE + GL + ++ ++ K V +++AEG+ A+ +SQL++ ++ E +
Sbjct: 333 VIPPETLAGLMDALFPKSKAKAIRYNEIAKVVEDMVAEGWSATQTVSQLYEKIMYDERVE 392
Query: 333 DEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373
D ++ R+ +E DK LVDG DE+L +LD+ V +C
Sbjct: 393 DVKKVRLAGVFSETDKRLVDGGDEHLAVLDLGVRVAGVLCQ 433
>gi|190360157|sp|P0C7N7.1|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2
Length = 411
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 178/377 (47%), Positives = 240/377 (63%), Gaps = 53/377 (14%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG---------- 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFR
Sbjct: 153 YSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT- 269
FK L + RV I E + LDA L ++ GDLR+AIT+LQ AARL G++ T
Sbjct: 213 FKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTA 272
Query: 270 ----------------------SKDLIS------VSGVIPPEVV----EGLF--AVCRSG 295
SK IS ++GVIP + + LF + +S
Sbjct: 273 GRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDALFPKSAAKSI 332
Query: 296 DFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGAD 355
++ K V N+IAEG+ AS +SQL++ V+ E + D ++ R+ +E DK LVDG D
Sbjct: 333 RYNEIAKVVENMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSETDKRLVDGGD 392
Query: 356 EYLQLLDVASNVIRAVC 372
E+L +LD+ V +C
Sbjct: 393 EHLAVLDLGVRVAGVLC 409
>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
Length = 356
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 166/324 (51%), Positives = 218/324 (67%), Gaps = 4/324 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V DV Q EVV VL +E A+ P+ML YGPPGTGKT+T LA A Q+FG
Sbjct: 34 PWVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++Y+ R+LELNASD+RGINVVRTKIK FA + S R G PCPP+KII+LDEADSMT
Sbjct: 93 DMYRERILELNASDERGINVVRTKIKNFAQLT-ASSVRPDGRPCPPFKIIVLDEADSMTH 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNY+SRII P+ SRC+KFRFK L E + +R+ HIC+
Sbjct: 152 AAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIITRLQHICDL 211
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLISVSGVIPPEVVEG 287
E ++++ +A ++ IS GD+RRAIT LQ RL G+ +I S DL+ +SG+IP ++
Sbjct: 212 ESVSIEPDAYQSIVKISGGDMRRAITTLQSCYRLKGAEHTINSDDLLEMSGIIPEHYLDD 271
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
VCRSG+++ V I Y ++ Q + VV ++D+Q+A IC L E
Sbjct: 272 YLEVCRSGNYERLEHFVREIGYSAYSVGQMMEQFVEYVVRCGSLTDKQKAIICDKLGECC 331
Query: 348 KCLVDGADEYLQLLDVASNVIRAV 371
L DG EYLQ++D+ +I A+
Sbjct: 332 YRLQDGGSEYLQIMDLGCTIILAL 355
>gi|366988801|ref|XP_003674168.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
gi|342300031|emb|CCC67788.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
Length = 350
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 163/331 (49%), Positives = 223/331 (67%), Gaps = 20/331 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
S+PWVEKYRPKQ+ D+A Q V VL TL++AN PHMLFYGPPGTGKT+T LA+A +
Sbjct: 20 HQSKPWVEKYRPKQLDDIAAQGHAVTVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDE
Sbjct: 80 LFGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFKPL R+
Sbjct: 140 ADSMTSDAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNAIDRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSITSKDLISVSGV 279
++ EE ++ + + L T+ IS GDLRRAIT LQ AA+ ++TS+++ ++GV
Sbjct: 200 RYVATEESVSYEDDVLKTILDISAGDLRRAITLLQSAAKRIQYTGAENVTSQNVKELAGV 259
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNII-------AEGYPASLLLSQLFDVVVETEDIS 332
+P ++++ + ++NK VN+II G+ + ++ QL D + ++
Sbjct: 260 VPDDILKMIVE-------KVSNKNVNDIIEYVNEFTKSGWSGAAVIDQLHDYYISNDEYD 312
Query: 333 DEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
+ + L + D L +G +E+LQLL++
Sbjct: 313 TAFKNNVSMILFDTDAKLSNGTNEHLQLLNL 343
>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
Length = 420
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 172/376 (45%), Positives = 227/376 (60%), Gaps = 62/376 (16%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 37 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 96
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-------GYPCPPYKIIIL 161
P LY+SR+LELNASD+RGI +VR K+K FA + Q G YPCPP+KIIIL
Sbjct: 97 PALYRSRILELNASDERGIGIVREKVKGFARTQLS--QPTGLDSSYFEQYPCPPFKIIIL 154
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTME YS++TRF +CNY++R+IEPLASRC+KFRFKPL +
Sbjct: 155 DEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRVIEPLASRCSKFRFKPLDNSAAAE 214
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-------------- 267
R+ HI E L LD + L S +GDLRRAITY+Q AARL G+
Sbjct: 215 RLAHIARLENLKLDEGVIDKLISCGEGDLRRAITYMQSAARLVGAGRPTGQKDGDEDSEM 274
Query: 268 -------ITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDLANKEVNNIIAEGYPASL 316
IT + + ++GV+P V++ L + ++ + V +I+A+G+ A
Sbjct: 275 TDASSEPITVRMIEEIAGVVPESVIDRLVQAMQPKKLGSSYEAVSVVVTDIVADGWSAGQ 334
Query: 317 LL----------------------------SQLFDVVVETEDISDEQQARICKCLAEVDK 348
L+ QL+ +V + I D Q+ +I +E+DK
Sbjct: 335 LVLQVSSVLIPLKGSVQLRDSILVVKDANNPQLYRRIVYNDAIPDIQKNKIVTAFSEMDK 394
Query: 349 CLVDGADEYLQLLDVA 364
LVDGADE+L +LD+A
Sbjct: 395 RLVDGADEHLSILDLA 410
>gi|398402105|ref|XP_003853207.1| replication factor C subunit 2 [Zymoseptoria tritici IPO323]
gi|339473089|gb|EGP88183.1| hypothetical protein MYCGRDRAFT_100072 [Zymoseptoria tritici
IPO323]
Length = 408
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 176/365 (48%), Positives = 230/365 (63%), Gaps = 50/365 (13%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 32 QPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 91
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SG----QRRGGYPCPPYKIIIL 161
PEL K+RVLELNASD+RGI++VR K+K FA + + SG + R Y CPPYKIIIL
Sbjct: 92 PELIKTRVLELNASDERGISIVREKVKNFARMQLSNPPSGPAGEEYRKKYSCPPYKIIIL 151
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L E
Sbjct: 152 DEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDEGNAGK 211
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------------- 265
R+ I E + L+ + TL S+GDLR+AIT+LQ AARL G
Sbjct: 212 RIEDIARLEAVTLEDGVVETLLRCSEGDLRKAITFLQSAARLVGAIQGPPTTTKRKRKTA 271
Query: 266 ---------------SSITSKDLI-----SVSGVIPPEVVEGLFA------VCRSGDFDL 299
SS TS + ++GVIP ++ L A + +
Sbjct: 272 VEDDEEDGDAMDIDTSSTTSPPITVAIISEIAGVIPDPTIDRLVASLTPKSSSQPAPYAP 331
Query: 300 ANKEVNNIIAEGYPASLLLSQLFD-VVVETEDISDEQQARICKCLAEVDKCLVDGADEYL 358
+ V +++AEG+ A ++SQL+D +V+ E + D + +I +E DK LVDG+DE+L
Sbjct: 332 IAQAVEDLVAEGWSAGQIVSQLYDKIVIWNETVGDRAKGKIMAVFSEADKRLVDGSDEHL 391
Query: 359 QLLDV 363
+LD+
Sbjct: 392 TVLDL 396
>gi|401837599|gb|EJT41507.1| RFC2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 353
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 161/324 (49%), Positives = 216/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V+VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
+I +E + D+ L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 YISEQENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +V+ + R GDFD N VN + G+ A+ +++QL + + + +I
Sbjct: 263 VPHDVLMKITDKVRGGDFDEINTYVNTFMKNGWSAASVVNQLHQYYITNDSFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSKLNNGTNEHIQLLNL 346
>gi|295672510|ref|XP_002796801.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282173|gb|EEH37739.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 177/383 (46%), Positives = 235/383 (61%), Gaps = 49/383 (12%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKY---------RPKQVKDVAHQEEVVRVLTNTLE 78
S P+ SE E QPWVEKY RPK + DVA QE + VL TL+
Sbjct: 20 SKPKASEKEADNTRL------QPWVEKYGIANPGIPSRPKTLDDVASQEHTITVLQRTLQ 73
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+N PHMLFYGPPGTGKT+T LA++ LFGP+LY+SR+LELNASD+RGI++VR KIK FA
Sbjct: 74 ASNLPHMLFYGPPGTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFA 133
Query: 139 AV-----AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
+ V YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CN
Sbjct: 134 RMQLSHPPVSDTAYCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCN 193
Query: 194 YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRA 253
Y++RII+PLASRC+KFRFK L SR+ I E L L + TL S+GDLRRA
Sbjct: 194 YVTRIIDPLASRCSKFRFKALDGSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRA 253
Query: 254 ITYLQGAARLFGSSITSK-----------DLIS--------------VSGVIPPEVVEGL 288
IT++Q AARL GS + SK D+ ++GV+P ++V L
Sbjct: 254 ITFMQSAARLVGSGLVSKPPPGKDEGGDEDMTDAGDEGVITVRTIEEIAGVVPDDIVNRL 313
Query: 289 FAVCRSGD----FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ ++ +K V +I+A+G+ AS +L+QL+ ++V + I D + I +
Sbjct: 314 VKALQPKKGRLPYEEVSKVVTDIVADGWSASQMLTQLYQIIVFDDSIEDIHKNSIVMVFS 373
Query: 345 EVDKCLVDGADEYLQLLDVASNV 367
E DK L+DGADE+L +LD+A +
Sbjct: 374 EFDKRLIDGADEHLTILDLALRI 396
>gi|321264422|ref|XP_003196928.1| DNA replication factor (activator 1 subunit) [Cryptococcus gattii
WM276]
gi|317463406|gb|ADV25141.1| DNA replication factor (activator 1 subunit), putative
[Cryptococcus gattii WM276]
Length = 363
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 172/347 (49%), Positives = 226/347 (65%), Gaps = 25/347 (7%)
Query: 39 RKMAPVLQSS-QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
R +AP+ QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+
Sbjct: 7 RSVAPIKDPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTS 66
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGY 151
T LA+A QLFGP+L+++RVLELNASD+RGI+VVR KIK+FA A V S + Y
Sbjct: 67 TILALARQLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHASGVSSDGKE--Y 124
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
PCPP+K+IILDEADSMT+DAQ+ALRR METYSK+TRF +CNY++RIIEPLASRC+KFRF
Sbjct: 125 PCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRF 184
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS----- 266
KPL +E +R+ I EG+ D LS + ++ GDLR+AITYLQ A RL S
Sbjct: 185 KPLEQESTRARMEMIAENEGVQTDPGVLSLILELAGGDLRKAITYLQTAQRLHSSIEPPT 244
Query: 267 SITSKDLISVSGVIPPEVVEGLFAVC----RSG-------DFDLANKEVNNIIAEGYPAS 315
+++ + +SGV+P +++ L A ++G FD V + EG+
Sbjct: 245 PVSALSIHEISGVVPEDLITDLLAAMGADRQTGIDPSLARGFDGVKIAVKRVEREGWSVG 304
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
+L Q+ D ++ I Q++ +AE DK L +G DE LQLLD
Sbjct: 305 QVLEQIHDALIPIPSIPAVQKSLAGIAIAECDKGLCEGGDEELQLLD 351
>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
Length = 333
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 160/328 (48%), Positives = 225/328 (68%), Gaps = 6/328 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRPK + D++HQE VV L ++ + PH+LFYGPPGTGKT+T +A+A +L+
Sbjct: 9 SLPWIEKYRPKVINDISHQEHVVATLRQSIASGQLPHLLFYGPPGTGKTSTIVAVARELY 68
Query: 108 GPELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + K+ R LELNASDDRGI VVR K+K FA A+ S + P +KII+LDEADS
Sbjct: 69 GNDFRKNGRYLELNASDDRGIKVVREKVKLFAQGAINSSE-----SMPAFKIIVLDEADS 123
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQ+ALRR ME YSKVTRF ICNY+SRII+P+ASRC KFRF PL++E M++R+ +I
Sbjct: 124 MTNDAQSALRRMMEDYSKVTRFCLICNYVSRIIDPIASRCVKFRFSPLTKESMAARLSYI 183
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
++E L LD + + TL + GDLR+AI +Q A + G +T+ ++++V+G+ P E++E
Sbjct: 184 GSQENLRLDDDIIDTLLDCANGDLRKAINLMQSARQTGGKELTNDEIVAVAGLAPKELLE 243
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ FD E+ +I+ GYP +L QL + +++ ++SD Q+AR C +AE
Sbjct: 244 NFWKAIAGNSFDSMRTEIESILLSGYPTLTILHQLSEDIMKRSELSDIQKARSCLRIAEA 303
Query: 347 DKCLVDGADEYLQLLDVASNVIRAVCNM 374
D L+DGA EY QL DV S ++R +M
Sbjct: 304 DSKLIDGASEYFQLFDVGSYIMRQYQSM 331
>gi|365759876|gb|EHN01638.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 161/324 (49%), Positives = 216/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V+VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
+I +E + D+ L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 YISEQENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +V+ + R GDFD N VN + G+ A+ +++QL + + + +I
Sbjct: 263 VPHDVLMKITDKVRGGDFDEINTYVNTFMKSGWSAASVVNQLHQYYITNDSFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSKLNNGTNEHIQLLNL 346
>gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314]
gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans]
gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1]
Length = 363
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 163/331 (49%), Positives = 222/331 (67%), Gaps = 17/331 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ QE ++VLT T+++ N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 25 PWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 85 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSM 144
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME Y+ +TRF ICNYI+RII+P+ SRC+KFRFK L+ E R+ +I
Sbjct: 145 TNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIG 204
Query: 228 NEEGLNLDAE-----ALSTLSSISQGDLRRAITYLQGAARL--------FGSSITSKDLI 274
+E L ++E + L IS GDLR+AITYLQ AA+L S IT + +
Sbjct: 205 QQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHHQSLITIQSIR 264
Query: 275 SVSGVIPPEVVEGL--FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDIS 332
+G++P +++ L F ++ L +II G+ A +LL QL D ++ E I+
Sbjct: 265 ETAGILPDDILAELIQFIKSKTQQSRLIKYIDQSIILSGWSAQILLDQLHDKLILDESIN 324
Query: 333 DEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
+ +I + + D+ L +G DE++QLL+V
Sbjct: 325 SLSKNKISQIFFQSDRKLNNGTDEHIQLLNV 355
>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
Length = 355
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 174/355 (49%), Positives = 226/355 (63%), Gaps = 10/355 (2%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K S + + + + V+R+ P PWVEKYRP+ V+DV Q EVV VL +E
Sbjct: 7 TGKSSASTNQDKATAAPVERRKPPA-----PWVEKYRPRSVEDVVEQSEVVAVLKKCVEG 61
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
A+ P+ML YGPPGTGKT+T LA Q+FG ++Y+ R+LELNASD+RGINVVRTKIK FA
Sbjct: 62 ADLPNMLLYGPPGTGKTSTILAAGRQIFG-DMYRDRILELNASDERGINVVRTKIKNFAQ 120
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
++ S R G PCPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SRII
Sbjct: 121 LS-ASNVRPDGRPCPPFKIIILDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRII 179
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQ 258
P+ SRC KFRFK L E+ + R+ IC EG+ +D E+ ++ IS GD+RRAIT LQ
Sbjct: 180 VPITSRCTKFRFKSLGEDQIIERLKLICQAEGVQMDGEESYKSIVRISGGDMRRAITTLQ 239
Query: 259 GAARLFGSS--ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASL 316
RL G I ++DL +SG+IP ++ VCRSG++ V I Y
Sbjct: 240 SCYRLKGPEHIINTQDLFEMSGIIPDYYLDDYLEVCRSGNYKRLEDFVREIGYSAYSVGQ 299
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+L Q + +V E+++D Q+ARIC L E L DG EYLQ++D+ I A+
Sbjct: 300 MLEQFVEFIVLNENLTDPQKARICDKLGECCYRLQDGGSEYLQIMDLGCEAILAL 354
>gi|448102295|ref|XP_004199768.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359381190|emb|CCE81649.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 168/341 (49%), Positives = 218/341 (63%), Gaps = 20/341 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +VA QE V++L TLE+AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 19 PWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALARQLYGP 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
L+KSRVLELNASDDRGI++VR K+K FA +AV + + YPCPPYK+IILDEADSM
Sbjct: 79 RLFKSRVLELNASDDRGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSM 138
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRT+E YS VTRF ICNYI+RII+PL+SRC+KFRF L+ + R+ +I
Sbjct: 139 TNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNDNALQRIRYIV 198
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF------------------GSSIT 269
+E LN+D + TL S+S GDLR+AIT+LQ A+RL IT
Sbjct: 199 EKENLNVDEDVPETLLSMSNGDLRKAITFLQSASRLSFALANPDDNEDRMHVDEGNGKIT 258
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
+ ++G+IP +V++ L G+ V I G+ A +L QL D V
Sbjct: 259 KPAVQEIAGIIPDDVLKRLVTTIEKGNTREIFNTVQEFILGGWSAQQVLDQLHDSYVMNH 318
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
+ E + +I L D L G DE++QLL+ V +A
Sbjct: 319 SLKPELKNKIALILFSSDCKLNSGTDEHIQLLNFCLQVAKA 359
>gi|331215451|ref|XP_003320406.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299396|gb|EFP75987.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 382
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 174/368 (47%), Positives = 231/368 (62%), Gaps = 37/368 (10%)
Query: 39 RKMAPVLQSSQ-------PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
+K AP SS PW+EKYRPK ++ V QE ++L+ L A+ PHMLFYGPP
Sbjct: 14 KKNAPTADSSSSQPPAALPWIEKYRPKSIESVQGQEGTTKILSKALNRADLPHMLFYGPP 73
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
GTGKT+T LA+A LFGPEL KSRVLELNASD+RGI+VVR KIK FA V++ GY
Sbjct: 74 GTGKTSTILALARDLFGPELMKSRVLELNASDERGISVVREKIKNFAKVSISPAT--SGY 131
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
PCP YKIIILDEADSMT+DAQ+ALRR ME YSK+TRF ICNY++RIIEP+ SRC+KFRF
Sbjct: 132 PCPAYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKFRF 191
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITS 270
KPLS S++ I E + + L +L SIS GDLRR+IT+LQ A++L S I +
Sbjct: 192 KPLSVSGTRSKLTEISTLESIKISDNVLDSLISISAGDLRRSITFLQSASKLATSDEILA 251
Query: 271 KDLISVSGVIPPEVVEGLF---------AVCRSGDFDLANKEVN---------------- 305
+D+ + G++P +++ L V GD D+ +V+
Sbjct: 252 QDIEEIGGIVPQKLMGRLLEAVGIEVRGQVGAGGDEDVEMSDVDQKKGRQKTPFEKIQDV 311
Query: 306 --NIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
+++ EGY A +++QL D+++ I + +A I L E DK L DGADE LQ+L V
Sbjct: 312 VTSVLREGYSAVQIINQLHDLILLDTLIPSKPKALISVALGEADKYLNDGADEGLQILAV 371
Query: 364 ASNVIRAV 371
+ +A+
Sbjct: 372 CLKISKAI 379
>gi|452825574|gb|EME32570.1| replication factor C [Galdieria sulphuraria]
Length = 354
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/348 (48%), Positives = 233/348 (66%), Gaps = 11/348 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP L PWVEKYRP ++KD+ +Q+E ++L N L + N PH LFYGPPGTGKT+ AL
Sbjct: 1 MAPSLPEELPWVEKYRPNKIKDLVYQQEAAQLLHNCLTSGNLPHCLFYGPPGTGKTSAAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A +LF PE+YK RVLELNASD+RGI VVR KIK FA +V S Q G +PCPP+KIII
Sbjct: 61 AFCKELFPPEIYKDRVLELNASDERGIKVVREKIKRFAQGSVSSAQFEG-FPCPPFKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++T DAQ ALRRTME +SK+TRFF +CNY++R+I+PLASRCAKFRF+ L ++
Sbjct: 120 LDEADAITPDAQTALRRTMEQFSKITRFFLLCNYVTRVIDPLASRCAKFRFRSLPMQLQV 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGV 279
R+ +I ++EG+ + + L TL+S GDLRRAI L+ A L GS+IT + + SV+
Sbjct: 180 DRLRYIVDQEGIMVSDDILQTLTSCCNGDLRRAIMTLESAYCLARGSNITDEIINSVTWR 239
Query: 280 IPPEVVEGL----FAVCRSGDFDLANKEVNNI----IAEGYPASLLLSQLFDVVVETEDI 331
+P V+ + +C SG+ L E+ N+ I GYP S ++ QL + ++ +
Sbjct: 240 VPDHVISQIDSNCLKICSSGENTLQFSELRNMAIEFINNGYPVSEIIYQLCEALIPVNHL 299
Query: 332 SDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQ 379
+ Q++ I A+ +K L+DG+DE L L+D+ V+ V N P+ +
Sbjct: 300 NKLQKSVIMIKFAQAEKMLIDGSDELLVLMDIFG-VLFQVYNEPDNVE 346
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 160/324 (49%), Positives = 223/324 (68%), Gaps = 6/324 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWVEKYRPK++ DVA Q+ VV VL TL +AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 22 EHNKPWVEKYRPKKLDDVAAQDHVVNVLKKTLSSANLPHMLFYGPPGTGKTSTILALTKE 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL K+RVLELNASD+RGI++VR K+K FA + V + Y CPPYKIIILDE
Sbjct: 82 LFGPELMKTRVLELNASDERGISIVREKVKNFARLTVSKPSKHDLENYLCPPYKIIILDE 141
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 142 ADSMTADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKSLDSSNALQRL 201
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---ITSKDLI-SVSGV 279
++ EEG+ + A +L T+ IS GDLRRAIT LQ A++ G S SK+L+ ++ V
Sbjct: 202 KYVAEEEGVKVKAGSLETILDISAGDLRRAITLLQSASKNIGYSGEDEVSKELVEELAAV 261
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P ++ + + + DF+ ++ + G+ A+ ++SQL D +++ + + ++
Sbjct: 262 VPESSIKQIVELVATRDFNKISEYIQEFTRNGWSAASVVSQLHDYYIKSSEYDTAFKNKV 321
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L + D L +G +E++QLL++
Sbjct: 322 SIILFDTDSKLTNGTNEHIQLLNM 345
>gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 364
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/331 (48%), Positives = 220/331 (66%), Gaps = 17/331 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ QE ++VLT T+++ N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 26 PWVEKYRPKSLSDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR--GGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 86 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLANYPCPPYKIIILDEADSM 145
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME Y+ +TRF ICNYI+RII+P+ SRC+KFRFK L+ E R+ +I
Sbjct: 146 TYDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIG 205
Query: 228 NEEGLNLDA----EALSTLSSISQGDLRRAITYLQGAARL--------FGSSITSKDLIS 275
+E L D + + L IS GDLR+AITYLQ AA+L S IT + +
Sbjct: 206 QQENLRFDKGQEDQVIQELLKISGGDLRKAITYLQSAAKLSETFDINDHQSLITIQSIRE 265
Query: 276 VSGVIPPEVVEGLFAVCRSGDFD---LANKEVNNIIAEGYPASLLLSQLFDVVVETEDIS 332
+G++P +++ L + + L +II G+ A +LL QL D ++ E I+
Sbjct: 266 TAGILPDDILLELIQLMKQKSIQQTKLIKYIDQSIILSGWSAQILLDQLHDKLILDESIN 325
Query: 333 DEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
+ +I + + D+ L +G DE++QLL+V
Sbjct: 326 SLSKNKISQIFFQSDRKLNNGTDEHIQLLNV 356
>gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta]
gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta]
Length = 353
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 226/353 (64%), Gaps = 4/353 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKSQGAPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIV 179
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRC+KFRFK L E+ + R+ +IC EG+ ++ +A ++ IS GDLRRAIT LQ
Sbjct: 180 PITSRCSKFRFKALGEDKVIDRLKYICGLEGVKIEEDAYKSIVKISGGDLRRAITTLQSC 239
Query: 261 ARLFG--SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLL 318
RL G +I + DL +SGVIP +E VCRSG+++ + V I Y ++
Sbjct: 240 YRLKGPEHTINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQMM 299
Query: 319 SQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
Q + +V ++D Q+A IC L E L DG EYLQ++D+ +I A+
Sbjct: 300 EQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDLGCCIILAL 352
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/326 (49%), Positives = 219/326 (67%), Gaps = 4/326 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK V DV Q EVV VL +L TA+ P++L YGPPGTGKT+T LA A QLF
Sbjct: 29 SVPWVEKYRPKNVDDVVEQGEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLF 88
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G +++K R+LELNASDDRGI V+R K+KTFA +A SG R G PCPP+KI+ILDEAD+M
Sbjct: 89 G-DMFKERILELNASDDRGIAVIRNKVKTFAQLA-ASGTRPDGKPCPPFKIVILDEADAM 146
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRTME +K TRF +CNY+SRIIEP+ SRC KFRFKPL +E + R+ IC
Sbjct: 147 THAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLRQEKIIERLRFIC 206
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG--SSITSKDLISVSGVIPPEVV 285
++E + ++ +A + IS GDLRRAIT LQ RL G + I D++ +SGV+P + +
Sbjct: 207 DQETVEVEDQAYQDIVDISGGDLRRAITTLQSCHRLKGKEAKIEHSDILEMSGVVPRKYL 266
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
E +VC++ ++ V + + Y L QL D ++ E ++D+Q++ IC + +
Sbjct: 267 EDFVSVCKTSNYSKLEDYVKGLTHDAYSVGQLFEQLTDFIIMHEGLTDKQKSTICDKIGD 326
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAV 371
L G EY+Q++D+ I+A+
Sbjct: 327 CCFRLQGGGSEYIQIMDLGCVTIQAL 352
>gi|452836376|gb|EME38320.1| hypothetical protein DOTSEDRAFT_161207 [Dothistroma septosporum
NZE10]
Length = 410
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 170/365 (46%), Positives = 232/365 (63%), Gaps = 50/365 (13%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 34 QPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SG----QRRGGYPCPPYKIIIL 161
PEL K+RVLELNASD+RGI++VR K+K FA + + SG + + YPCPPYKII+L
Sbjct: 94 PELMKTRVLELNASDERGISIVREKVKDFARMQLSNPPSGPAGEEYKKKYPCPPYKIIVL 153
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTMETYSK+TRF +CNY++RII+PLASRC+KFRFK L E
Sbjct: 154 DEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGNAGR 213
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------------- 265
R+ I EG+ ++ TL S+GDLR+AIT+LQ AARL G
Sbjct: 214 RIEDIAKLEGVKMEEGVTETLLRCSEGDLRKAITFLQSAARLVGAVQLGAPSGDKKRKRK 273
Query: 266 SSITSKDLIS---------------------VSGVIPPEVVEGLFAVC-----RSGDFDL 299
+ + D + ++GVIP + ++ L RS +
Sbjct: 274 AVVEDDDAMDIDSESTPTTSSIPITISSIEEIAGVIPEDTIDRLRTAITPKSGRSAPYGP 333
Query: 300 ANKEVNNIIAEGYPASLLLSQLFD-VVVETEDISDEQQARICKCLAEVDKCLVDGADEYL 358
+ V +++AEG+ A+ +++QL+D +V+ E + D + +I ++ DK LVDG+DE+L
Sbjct: 334 IAQAVEDLVAEGWSATQIVTQLYDKIVLLDETVDDAAKNKIMLFFSQTDKRLVDGSDEHL 393
Query: 359 QLLDV 363
+LD+
Sbjct: 394 TILDL 398
>gi|451849989|gb|EMD63292.1| hypothetical protein COCSADRAFT_38154 [Cochliobolus sativus ND90Pr]
Length = 416
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 169/383 (44%), Positives = 236/383 (61%), Gaps = 59/383 (15%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ ++VL+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA------------AVAVGSGQRRGG------ 150
PEL KSRVLELNASD+RGI++VR K+K FA V SG GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTGEGGMVRYRD 152
Query: 151 -YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KF
Sbjct: 153 KYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKF 212
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--- 266
RFK L + RV I E + LD L ++ GDLR+AIT+LQ AARL G+
Sbjct: 213 RFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQSAARLVGALQS 272
Query: 267 ------------------------------SITSKDLISVSGVIPPEVV----EGLF--- 289
S++ + ++GV+PP+ + LF
Sbjct: 273 QGGSNKKGKKRTAVPEDDEMDIDSSNTATPSVSLPTIAEIAGVLPPDTLSTFTSALFPKS 332
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ +S ++ K V N++AEG+ A+ + QL++ ++ E + D ++ R+ +E DK
Sbjct: 333 SAQKSIRYNEIAKVVENMVAEGWSAAQTVGQLYEQIMFDERVEDVKKVRLAAVFSETDKR 392
Query: 350 LVDGADEYLQLLDVASNVIRAVC 372
LVDG+DE+L +LD+ V +C
Sbjct: 393 LVDGSDEHLAVLDLGVRVAGVLC 415
>gi|167523687|ref|XP_001746180.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775451|gb|EDQ89075.1| predicted protein [Monosiga brevicollis MX1]
Length = 323
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 163/313 (52%), Positives = 213/313 (68%), Gaps = 3/313 (0%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
+E RPK DVAHQ EVV +L + + PH LFYGPPGTGKT+T LA+A + FGP+L
Sbjct: 1 MEHSRPKTTHDVAHQSEVVAMLQKCVAGGDMPHTLFYGPPGTGKTSTILAVAREFFGPQL 60
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
K RVLELNASD+RGI VVR KIK FA V + + GGYPCPP+KII+LDEAD+MTE A
Sbjct: 61 MKERVLELNASDERGIGVVREKIKNFA-VMTANTRVSGGYPCPPFKIILLDEADAMTEAA 119
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
Q+ALRRT+E +S VTRF +CNY+SRIIEPLASRCAKFRFKPLS+ + +R+ HI + E
Sbjct: 120 QSALRRTIEQHSNVTRFCMVCNYVSRIIEPLASRCAKFRFKPLSDATVLARLQHIRDAEN 179
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSGVIPPEVVEGLFA 290
+ E L T+ +S GD+R+AIT+LQ RL G I + + VSG++P + L +
Sbjct: 180 VKCADEVLQTIVKVSGGDMRQAITFLQSCHRLRGDLGIETSHVEDVSGLVPQSTINELLS 239
Query: 291 VCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCL 350
C F+ V++ I G+ S LL QL + ++E E + + ++A+I +A DK L
Sbjct: 240 RCNENSFEALQASVDDAILSGFSGSQLLHQLHETLMEME-MDESKKAKILHKMAVADKRL 298
Query: 351 VDGADEYLQLLDV 363
+DGADE L LLDV
Sbjct: 299 IDGADEQLTLLDV 311
>gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina
98AG31]
Length = 382
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 177/368 (48%), Positives = 230/368 (62%), Gaps = 37/368 (10%)
Query: 39 RKMA------PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPG 92
RKMA VL S+ PWVEKYRPK ++ V Q+ RVL TL A+ PHMLFYGPPG
Sbjct: 14 RKMAEAPSNPTVLPSALPWVEKYRPKNIESVEGQDATTRVLAKTLHRADLPHMLFYGPPG 73
Query: 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152
TGKT+T LA+A +LFGPEL KSRVLELNASD+RGI+VVR KIK+FA V++ YP
Sbjct: 74 TGKTSTILALARELFGPELMKSRVLELNASDERGISVVRDKIKSFAKVSISPAT--NAYP 131
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
CPP+KIIILDEADSMT+DAQ+ALRR ME YSK+TRF ICNY++RIIEP+ SRC+KFRF
Sbjct: 132 CPPFKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKFRFT 191
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----- 267
PLS SR+ IC E + + L++L +S GDLRR+IT+LQ A++L S
Sbjct: 192 PLSSTDTLSRLNEICRLENVKVAEPVLASLIKVSDGDLRRSITFLQSASKLRNGSSADDE 251
Query: 268 ---ITSKDLISVSGVIPPEVVEGLFA-----VCRSGDFDLAN----------------KE 303
IT +D+ + GVIP + L V GD +A+ +
Sbjct: 252 AGEITQEDVEEIGGVIPDTEIRKLMKTMGIDVEADGDVTMADGNTRGKTRQTPFEKIAEA 311
Query: 304 VNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
V ++ +GY + L+SQL D+++ I + I L E DK L DGA+E LQ+L +
Sbjct: 312 VELLMRQGYSSVQLISQLHDLILLDTLIPPRCKTMISIALGETDKRLNDGAEEELQVLSL 371
Query: 364 ASNVIRAV 371
+ +A+
Sbjct: 372 CLKIWKAM 379
>gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 154/329 (46%), Positives = 220/329 (66%), Gaps = 1/329 (0%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
PV++ PWVEKYRP +++D+A+QEEVV+ L L+T N PH+L +GPPGTGKT+T +A+
Sbjct: 21 PVVKPMLPWVEKYRPNKIEDLAYQEEVVQSLQGVLKTGNLPHLLLHGPPGTGKTSTIIAL 80
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QLFGP+ ++ RVLELNASDDRGINVVR K+K FA V G+ CP YKIIILD
Sbjct: 81 AKQLFGPDFWRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNPN-PGFLCPSYKIIILD 139
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT DAQ+ALRR +E Y+ TRF ICNYI++IIEPL SRC K+RFK + E R
Sbjct: 140 EADSMTNDAQSALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKSIPENEQIER 199
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ + + E + + +AL L +S GDLR+++ LQ ++ L+ SI K + +SG IP
Sbjct: 200 LKFVADSESVTYNLDALKQLVVVSGGDLRKSVNMLQSSSTLYEKSINKKAINEISGFIPD 259
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
E +E L +V ++ +E +I +GY L+ Q DVV+ T+ I ++Q+A++ +
Sbjct: 260 EQIEDLVSVIQTKSIRSVQEECTRVIQQGYNIEQLILQFLDVVLATDTIKEKQKAKMMEI 319
Query: 343 LAEVDKCLVDGADEYLQLLDVASNVIRAV 371
A +KCL++G+ E LQ+ ++ + R +
Sbjct: 320 AAYTEKCLIEGSAEDLQIFNLMAQCQRII 348
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 225/353 (63%), Gaps = 4/353 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKSQGTPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIV 179
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRC+KFRFK L E+ + R+ +IC EG+ ++ +A ++ IS GDLRRAIT LQ
Sbjct: 180 PITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSC 239
Query: 261 ARLFGSS--ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLL 318
RL G I + DL +SGVIP +E VCRSG+++ + V I Y ++
Sbjct: 240 YRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQMM 299
Query: 319 SQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
Q + +V ++D Q+A IC L E L DG EYLQ++D+ +I A+
Sbjct: 300 EQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDLGCCIILAL 352
>gi|402861875|ref|XP_003895301.1| PREDICTED: replication factor C subunit 4, partial [Papio anubis]
Length = 298
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 157/261 (60%), Positives = 195/261 (74%), Gaps = 7/261 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT + + ++
Sbjct: 207 QQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFD 298
GVIP E ++G+FA C+SG FD
Sbjct: 267 GVIPAEKMDGVFAACQSGSFD 287
>gi|255944955|ref|XP_002563245.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587980|emb|CAP86049.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 388
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 164/341 (48%), Positives = 220/341 (64%), Gaps = 33/341 (9%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115
RPK + DVA Q+ VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFGP LY+SR
Sbjct: 37 RPKSLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSR 96
Query: 116 VLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDEADSMTED 170
+LELNASD+RGI +VR K+K FA + R YPCPP+KIIILDEADSMT+D
Sbjct: 97 ILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEADSMTQD 156
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTMETYS++TRF +CNY++RIIEPLASRC+KFRFK L R+ +I +E
Sbjct: 157 AQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNSAAGERIGNIAEQE 216
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----------------------- 267
GL L+ + TL GDLRRAITYLQ AARL G++
Sbjct: 217 GLQLEDGVIDTLIRCGDGDLRRAITYLQSAARLVGATKPPAAKDADDDDTEMTDVGSKSS 276
Query: 268 -ITSKDLISVSGVIPPEVVEGLFAVC--RSGD--FDLANKEVNNIIAEGYPASLLLSQLF 322
IT + + ++GV+P +++ L +SG ++ + +++A+G+ A+ L+ QL+
Sbjct: 277 VITVRSIEEIAGVLPDNILDSLVEAMQPKSGGSVYEAVAGVITDLVADGWSATQLVGQLY 336
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
VV E I D Q+ +I +E+DK LVDG+DE+L +LD+
Sbjct: 337 RRVVSNEAIPDIQKNKIVMIFSEMDKRLVDGSDEHLSMLDL 377
>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans CBS 6340]
Length = 356
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 159/323 (49%), Positives = 216/323 (66%), Gaps = 6/323 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S+PWVEKYRPK+++DV Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L+
Sbjct: 23 SKPWVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPHMLFYGPPGTGKTSTILALTKELY 82
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GP L KSRVLELNASD+RGI +VR KIK+FA + V S R YPCPPYKIIILDEAD
Sbjct: 83 GPALMKSRVLELNASDERGIAIVRDKIKSFARLTVSKPSQNDREKYPCPPYKIIILDEAD 142
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ+ALRRTME YS VTRF ICNY++RII+PLASRC+KFRFKPL SRV +
Sbjct: 143 SMTADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDSSNALSRVQY 202
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS----SITSKDLISVSGVIP 281
+ EE L D L + +SQGDLRRAI LQ +++ IT+ + ++G +P
Sbjct: 203 VAKEERLQYDEHVLEKILDVSQGDLRRAIMLLQSTSKIVKHLDPPQITALTVDELAGTVP 262
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
E++ L A + + + V +I G+ + +++QL + ++ S + +
Sbjct: 263 TELLNELVAKIATANLETIKINVREMIKSGWSGASVVNQLHHYYINSDQYSTAFKNKASW 322
Query: 342 CLAEVDKCLVDGADEYLQLLDVA 364
+ + D L +G++E++QLL++A
Sbjct: 323 LIFDADSKLTNGSNEHIQLLNLA 345
>gi|349605347|gb|AEQ00618.1| Replication factor C subunit 4-like protein, partial [Equus
caballus]
Length = 266
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 158/261 (60%), Positives = 194/261 (74%), Gaps = 7/261 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 5 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 59
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 60 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 118
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 119 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 178
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 179 QQQRLLDIAGKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 238
Query: 278 GVIPPEVVEGLFAVCRSGDFD 298
GVIP E ++GL A C+SG FD
Sbjct: 239 GVIPAETIDGLLAACQSGSFD 259
>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
pisum]
Length = 359
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 167/327 (51%), Positives = 223/327 (68%), Gaps = 4/327 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
S+ PWVEKYRP+ V +V+ Q E+V VL LE A+ PH+LFYGPPGTGKT+T +A A Q
Sbjct: 33 STTPWVEKYRPRTVDEVSEQSEIVAVLKQCLEQGADMPHLLFYGPPGTGKTSTIIAAARQ 92
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG ++YK+R+LELNASDDRGI V+R K+KTFA + S +R G PCPP+KI++LDEAD
Sbjct: 93 LFG-DMYKNRMLELNASDDRGIQVIRDKVKTFAQLT-ASDRRPDGKPCPPFKIVVLDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRT+E +K TRF ICNY+S II+PL SRC+KFRFKPLS E+M +R+ H
Sbjct: 151 SMTAPAQAALRRTIERETKTTRFCLICNYVSCIIDPLTSRCSKFRFKPLSHEIMLTRLEH 210
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSGVIPPEV 284
IC EEG+ L+ L S GD+RRAIT LQ ARL G I D++ V G +P
Sbjct: 211 ICKEEGVKCAPRVLARLVDASGGDMRRAITSLQSTARLKGEVGIEEVDVLEVVGTVPDIW 270
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
++ + + R D+ + V ++I E Y AS +L QL D +V + D+ D Q+A ICK ++
Sbjct: 271 LDRMIDMGRMYDYQKMDGFVEDLIFEAYSASQILEQLHDKIVFSTDLKDNQKAIICKSIS 330
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRAV 371
L +G EY+ LL++ +V +A+
Sbjct: 331 ICAYRLQEGCSEYVTLLNLLCSVAKAL 357
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 225/353 (63%), Gaps = 4/353 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKNQGATTTRRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIV 179
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRC+KFRFK L ++ + R+ +IC EG+ ++ +A ++ IS GDLRRAIT LQ
Sbjct: 180 PITSRCSKFRFKALGDDKVIDRLKYICAMEGVKIEEDAYKSIVKISGGDLRRAITTLQSC 239
Query: 261 ARLFGSS--ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLL 318
RL G I + DL +SGVIP +E VCRSG+++ + V I Y ++
Sbjct: 240 YRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQMM 299
Query: 319 SQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
Q + VV ++D Q+A+IC L E L DG EYLQ++D+ +I A+
Sbjct: 300 EQFVEFVVHHPGLNDPQKAKICDKLGECCFRLQDGGSEYLQIMDLGCCIILAL 352
>gi|367007401|ref|XP_003688430.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
gi|357526739|emb|CCE65996.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 161/336 (47%), Positives = 219/336 (65%), Gaps = 12/336 (3%)
Query: 38 KRKMAPV--LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
KRK+ P L +++PWVEKYRP+ + DVA Q+ V VL TL +AN PHMLFYGPPGTGK
Sbjct: 11 KRKIQPEGDLDNNKPWVEKYRPRNLDDVAAQDHAVAVLKRTLGSANLPHMLFYGPPGTGK 70
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPC 153
T+T LA+ +LFGP+L KSRVLELNASD+RGI++VR K+K FA + V + YPC
Sbjct: 71 TSTILALTKELFGPQLVKSRVLELNASDERGISIVREKVKNFARLTVSKPSKDDLENYPC 130
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
PPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK
Sbjct: 131 PPYKIIILDEADSMTADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKA 190
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
L E R+ ++ +E + L + IS GDLRRAIT LQ ++ S+ D+
Sbjct: 191 LDETNALDRLKYVATQESTKYEEGTLEKILQISAGDLRRAITLLQSVSK--SSTFNKSDM 248
Query: 274 ISV------SGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE 327
I++ +GV+P ++ + + S D D I G+ + ++ QL D +
Sbjct: 249 ITIKKVEELAGVVPESIINQILKIIESKDVDAITAFTRTFIKNGWSGAAVVDQLHDHYIT 308
Query: 328 TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
+++ S + + + L D L++G +E++QLL+V
Sbjct: 309 SDNYSTQFKNSVSWILFNADSKLLNGTNEHIQLLNV 344
>gi|367015134|ref|XP_003682066.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
gi|359749728|emb|CCE92855.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
Length = 354
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 164/345 (47%), Positives = 227/345 (65%), Gaps = 12/345 (3%)
Query: 38 KRKMAPV--LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
+RK+AP +SS+PWVEKYRPK++ +VA Q+ V VL TL ++N PHMLFYGPPGTGK
Sbjct: 10 RRKVAPEGESESSKPWVEKYRPKKLDEVAAQDHAVNVLKKTLGSSNLPHMLFYGPPGTGK 69
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPC 153
T+T LA+ +LFGPEL K+RVLELNASD+RGI++VR K+K FA + V S + R +PC
Sbjct: 70 TSTILALTKELFGPELTKTRVLELNASDERGISIVREKVKNFARLTVSKPSAKDRENHPC 129
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
PPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK
Sbjct: 130 PPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKS 189
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSIT 269
L R+ +I EE ++ + L + IS GD+RRAIT LQ A + G IT
Sbjct: 190 LDAANALDRLKYIAKEESVDYEEGVLDDILKISSGDMRRAITLLQSAHKRKGLEGSKKIT 249
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
+++ +SG++P + L A + D + VN + G+ + + QL + + ++
Sbjct: 250 PQEIEEISGLVPNSTIHELAAKIAESNIDEIAEYVNTFMKSGWSVAAVTEQLHNYYLVSD 309
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM 374
D + + ++ L D L +G +E++QLL N++ +C +
Sbjct: 310 DYGTDFKNKVSWILFNTDSKLTNGTNEHIQLL----NLVIQICEI 350
>gi|326475381|gb|EGD99390.1| DNA replication factor C subunit Rfc2 [Trichophyton tonsurans CBS
112818]
Length = 396
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 227/355 (63%), Gaps = 38/355 (10%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC----------PHMLFYGPPGTGK 95
Q +QPWVEKYRPK + DV Q+ + VL L +N PHMLFYG PGTGK
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNVKLQYCLFKPLPHMLFYGSPGTGK 89
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG----QRRGGY 151
T+T LA++ LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R Y
Sbjct: 90 TSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQY 149
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
PCPP+KIIILDEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+P+ASRC+KFRF
Sbjct: 150 PCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRF 209
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGS--- 266
K L SR++ I E L+L+ + TL S GDLR+AIT++Q +ARL +GS
Sbjct: 210 KVLDGSAAQSRLIEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGSGKK 269
Query: 267 ---------------SITSKDLISVSGVIPPEVVEGLFAVC----RSGDFDLANKEVNNI 307
IT + + VSG++P V++ + A R+ ++ + V ++
Sbjct: 270 KDSSDKEMELDDVKPKITVRSIEEVSGLVPETVMQRVVAALRPSKRASKYEEISSLVADL 329
Query: 308 IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
+A+G+ AS +LSQ + V++ E I+D Q+ +I K +E DK LVDGADE+L LD
Sbjct: 330 VADGWSASQVLSQTYKAVLQDESIADVQKNQILKVCSEFDKRLVDGADEHLSTLD 384
>gi|58270226|ref|XP_572269.1| activator 1 41 kda subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134117646|ref|XP_772457.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255071|gb|EAL17810.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228527|gb|AAW44962.1| activator 1 41 kda subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 363
Score = 323 bits (828), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 168/336 (50%), Positives = 221/336 (65%), Gaps = 24/336 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 18 QPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFG 77
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGYPCPPYKIIILD 162
P+L+++RVLELNASD+RGI+VVR KIK+FA A AV S + YPCPP+K+IILD
Sbjct: 78 PDLFRARVLELNASDERGISVVREKIKSFARETPRHAPAVSSDGKE--YPCPPFKLIILD 135
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT+DAQ+ALRR METYSK+TRF +CNY++RIIEPLASRC+KFRFKPL + +R
Sbjct: 136 EADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQGSTRAR 195
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-----SITSKDLISVS 277
+ I EG+ D +S + ++ GDLR+AITYLQ A RL S +++ + +S
Sbjct: 196 MEMIAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQRLHSSIEPPMPVSALSIHEIS 255
Query: 278 GVIPPEVVEGLFAVC----RSG-------DFDLANKEVNNIIAEGYPASLLLSQLFDVVV 326
GV+P +++ L A ++G FD V + EG+ +L Q+ D ++
Sbjct: 256 GVVPEDLITDLLAAMGVDRQTGIDHSLARGFDGVKIAVTRVEREGWSVGQVLEQIHDTLI 315
Query: 327 ETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
I Q++ +AE DK L +G DE LQLLD
Sbjct: 316 PIPSIPAIQKSLAGIAIAECDKGLCEGGDEELQLLD 351
>gi|209877196|ref|XP_002140040.1| replication factor C, subunit 4 [Cryptosporidium muris RN66]
gi|209555646|gb|EEA05691.1| replication factor C, subunit 4, putative [Cryptosporidium muris
RN66]
Length = 335
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 220/328 (67%), Gaps = 4/328 (1%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+ Q++ WVEKYRP+Q+ D+ HQ EVV++L N LE N PH+LFYGPPGTGKT+ LA+
Sbjct: 3 ITQNNNLWVEKYRPRQIADIYHQTEVVKMLKNVLEFGNMPHLLFYGPPGTGKTSAILALC 62
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR--GGYPCPPYKIIIL 161
+LFG + +++R LELNASD+RGINVVR KIKT+ V S + G PP+K++IL
Sbjct: 63 RELFGNDEFRNRTLELNASDERGINVVREKIKTWTRQVVYSNKINPITGRKIPPWKVVIL 122
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEA+ MT DAQ+ALRR +ET +K TRF ICNYI++IIEPLASRCAKFRF+P+S +
Sbjct: 123 DEAEMMTSDAQSALRRIIETSAKNTRFVIICNYINKIIEPLASRCAKFRFQPISFKAQRE 182
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSGV 279
R+ IC +E + + E L +SQGDLRRAIT LQ L+ + + +I V+G+
Sbjct: 183 RLNFICQQENIICEPEVFDILVDLSQGDLRRAITILQSTCELYSEEEIVKATSVIEVAGI 242
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
P V EG+ C + D D ++ + I EG+ + ++ QL ++ E +D+ D ++A +
Sbjct: 243 PPLSVAEGIMNFCFTKDIDSIVQKTTDTINEGWDVATIIRQLVLLITENKDLDDAKKAYL 302
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNV 367
LAE D C+ DG++E+L LL++ SN+
Sbjct: 303 ALRLAEADACITDGSNEFLILLNICSNM 330
>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 360
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/327 (49%), Positives = 218/327 (66%), Gaps = 4/327 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK V D+ Q EVV VL TL+ A+ P++LFYGPPGTGKT+T LA A QL
Sbjct: 33 SNIPWVEKYRPKTVDDIVEQVEVVSVLRQTLKGADLPNLLFYGPPGTGKTSTILAAARQL 92
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FG +++K R+LELNASDDRGI V+R K+KTFA ++ S R G PCPP+KI++LDEADS
Sbjct: 93 FG-DMFKERILELNASDDRGIQVIRDKVKTFAQLS-ASSTRPDGQPCPPFKIVLLDEADS 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQ ALRRTME Y+K TRF +CNY+SRII P+ SRC+KFRFKPL E + R+ I
Sbjct: 151 MTSAAQAALRRTMELYTKTTRFCLVCNYVSRIIPPITSRCSKFRFKPLGENKIFERLSKI 210
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISVSGVIPPEV 284
E +N++ + L TL + GDLRRAIT LQ AR+ G IT +D+ V+GVIP V
Sbjct: 211 SKAEKVNINDDTLMTLVKCTGGDLRRAITSLQSCARIKEEGELITIEDVNEVAGVIPDSV 270
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ L C ++ VN + + Y + L+ QL + +++ +SD+ +A I L+
Sbjct: 271 ITELINTCNKNNYTTIEDFVNEVTYQAYSVAQLMEQLTEYIIQDFKLSDKAKATIFDKLS 330
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRAV 371
L+DGA EYL L+D+ + +A+
Sbjct: 331 LCSSRLIDGASEYLLLIDLCCTIAKAL 357
>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
Length = 356
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/323 (50%), Positives = 216/323 (66%), Gaps = 4/323 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V D+ Q EVV V+ +E + P+MLFYGPPGTGKT+ A A Q+FG
Sbjct: 34 PWVEKYRPKNVNDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+YK R+LELNASDDRGI VVR KIK+FA + + G CPP+KIIILDEADSMT
Sbjct: 93 SMYKDRILELNASDDRGIQVVREKIKSFA-LRRANPNGPDGKKCPPFKIIILDEADSMTG 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR ME S TRF +CNY+SRII+P+ASRC KFRFKPLS+E +R+ +ICNE
Sbjct: 152 AAQTALRRIMEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSIARLEYICNE 211
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSGVIPPEVVEG 287
E L D L + S GDLR+A+ LQ RL G IT+ D + V G+IP E +
Sbjct: 212 ENLKADKSVLEKIVEASGGDLRQAVMCLQSITRLKGKDYEITADDALDVIGLIPDEQINI 271
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
L+ C+ G++ K + N++ EGYP + ++ QL + ++ +++++D+Q+A I L E D
Sbjct: 272 LWEACKKGNYINVQKSLENLLLEGYPGAKVIEQLNERIIFSDELTDKQKAIIGDVLGECD 331
Query: 348 KCLVDGADEYLQLLDVASNVIRA 370
L +G+DEY+QLL+V S + A
Sbjct: 332 FRLTEGSDEYIQLLNVFSTTLMA 354
>gi|405124075|gb|AFR98837.1| activator 1 41 kda subunit [Cryptococcus neoformans var. grubii
H99]
Length = 363
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 170/347 (48%), Positives = 225/347 (64%), Gaps = 25/347 (7%)
Query: 39 RKMAPVLQSS-QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
R+ AP+ QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+
Sbjct: 7 RQAAPIKDPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTS 66
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGY 151
T LA+A QLFGP+L+++RVLELNASD+RGI+VVR KIK+FA A + S + Y
Sbjct: 67 TILALARQLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHAPGISSDGKE--Y 124
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
PCPP+K+IILDEADSMT+DAQ+ALRR METYSK+TRF +CNY++RIIEPLASRC+KFRF
Sbjct: 125 PCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRF 184
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS----- 266
KPL + +R+ I EG+ D +S + ++ GDLR+AITYLQ A RL S
Sbjct: 185 KPLEQGSTRARMEMIAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQRLHSSIEPPT 244
Query: 267 SITSKDLISVSGVIPPEVVEGLFA---------VCRS--GDFDLANKEVNNIIAEGYPAS 315
+++ + +SGV+P +++ L A + RS FD V + EG+
Sbjct: 245 PVSALSIHEISGVVPEDLITDLLAAMGVDRQIGIDRSLARGFDGVMVAVKRVEREGWSVG 304
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
+L Q+ D ++ I Q++ +AE DK L +G DE LQLLD
Sbjct: 305 QVLEQIHDALIPIPSIPAVQKSLAGIAIAECDKGLCEGGDEELQLLD 351
>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
Length = 353
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 159/324 (49%), Positives = 216/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + +SGDFD K VN + G+ A+ +++QL + + ++ + +I
Sbjct: 263 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSATSVVNQLHEYYITNDNFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSRLNNGTNEHIQLLNL 346
>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
Length = 353
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 159/324 (49%), Positives = 216/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKIFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 FISEQENVKCDDGVLEXILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + +SGDFD K VN + G+ A+ +++QL + + ++ + +I
Sbjct: 263 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSRLNNGTNEHIQLLNL 346
>gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789]
gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291]
gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118]
gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13]
gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23]
gi|349579253|dbj|GAA24416.1| K7_Rfc2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764724|gb|EHN06245.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 159/324 (49%), Positives = 216/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + +SGDFD K VN + G+ A+ +++QL + + ++ + +I
Sbjct: 263 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSRLNNGTNEHIQLLNL 346
>gi|398365131|ref|NP_012602.3| Rfc2p [Saccharomyces cerevisiae S288c]
gi|730502|sp|P40348.1|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
gi|392298494|gb|EIW09591.1| Rfc2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 353
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 159/324 (49%), Positives = 216/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + +SGDFD K VN + G+ A+ +++QL + + ++ + +I
Sbjct: 263 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSRLNNGTNEHIQLLNL 346
>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
Length = 353
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 159/324 (49%), Positives = 216/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + +SGDFD K VN + G+ A+ +++QL + + ++ + +I
Sbjct: 263 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSRLNNGTNEHIQLLNL 346
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 162/331 (48%), Positives = 215/331 (64%), Gaps = 24/331 (7%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
SQPWVE+YRPK + +VA Q+ V VL L +AN PHMLFYGPPGTGKT+T LA+A QL+
Sbjct: 6 SQPWVERYRPKSIDEVASQQHAVNVLRKALTSANLPHMLFYGPPGTGKTSTILALARQLY 65
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
GPEL +SRVLELNASD+RGI+VVR KIK+FA AV + YP PPYKI+ILDEADSM
Sbjct: 66 GPELMRSRVLELNASDERGISVVRDKIKSFARAAVSAPN--PDYPSPPYKIVILDEADSM 123
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRR ME YS++TRF +CNY++RIIEP+ASRC+KFRF+PL +R+LHI
Sbjct: 124 TQDAQGALRRIMEQYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLDVASTEARLLHIA 183
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVS---GVIP 281
EGL L+ + + L S+GD+RR+ITYLQ ARL G + +VS G +P
Sbjct: 184 QMEGLRLNPDLVPVLIRSSEGDMRRSITYLQSIARLASARGGDVRDMSPTTVSELAGAVP 243
Query: 282 PEVVEGLF----------------AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV 325
V++ L S DFD+ + V +++ EGY + ++ QL D +
Sbjct: 244 TYVIQSLVRAIGIDSDDINDELPPRATGSTDFDVIERAVRHVVREGYSSLQVVLQLHDYI 303
Query: 326 VETEDISDEQQARICKCLAEVDKCLVDGADE 356
+ +S +++ + L DK L+DG +E
Sbjct: 304 ISHPLLSAKRKTKCALHLGATDKSLMDGGEE 334
>gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|350645477|emb|CCD59829.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Schistosoma mansoni]
Length = 362
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 171/358 (47%), Positives = 226/358 (63%), Gaps = 20/358 (5%)
Query: 27 QSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHML 86
+ P+ S+ +K Q PWVEKYRPK V +VA+Q EVV VL +E ++ P++L
Sbjct: 9 KQKPQDSKRRIKS------QKHIPWVEKYRPKTVGEVAYQTEVVSVLQRCIEGSDLPNLL 62
Query: 87 FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
FYGPPGTGKT+ LA+A QLFGP LY RVLELNASD+RGI+V+R K+K FA +AV S
Sbjct: 63 FYGPPGTGKTSLILALARQLFGP-LYSERVLELNASDERGISVIREKVKAFAHIAVSSST 121
Query: 147 RRGGYP---CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
G PPYK+IILDEADSMT AQ ALRRTMET + TRF CNY++RIIEP+
Sbjct: 122 NSSGSSSTNIPPYKLIILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPIT 181
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
SRCAKFRF+PL E+ SR+ HI + E L++ E L L S+ GDLR+ IT LQ +L
Sbjct: 182 SRCAKFRFRPLDNEIARSRLRHIADAENLSITNETLDHLLSLCHGDLRQGITMLQCVHQL 241
Query: 264 F----------GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYP 313
SSITSK+L + V+P ++++ L +G FD + N++ EGY
Sbjct: 242 ILSVDDSDVGCRSSITSKELDEAAAVVPSDLIKSLIKTSENGSFDDLQIIIKNLLLEGYS 301
Query: 314 ASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
A QL + ++ E +S Q+A I + +A D L+DGADEYLQLL V +++ +
Sbjct: 302 AHQTTYQLHEYIINDEKLSCSQKASILESIAVADSRLIDGADEYLQLLAVGGTLLKTI 359
>gi|452001809|gb|EMD94268.1| hypothetical protein COCHEDRAFT_1028190 [Cochliobolus heterostrophus
C5]
Length = 1071
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/384 (44%), Positives = 235/384 (61%), Gaps = 60/384 (15%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ ++VL+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 687 QPWVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 746
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA------------AVAVGSGQRRGG------ 150
PEL KSRVLELNASD+RGI++VR K+K FA V SG GG
Sbjct: 747 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTGEGGMVRYRD 806
Query: 151 -YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KF
Sbjct: 807 KYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKF 866
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--- 266
RFK L + RV I E + LD L ++ GDLR+AIT+LQ AARL G+
Sbjct: 867 RFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQSAARLVGAIQS 926
Query: 267 -------------------------------SITSKDLISVSGVIPPEVV----EGLF-- 289
S++ + ++GV+PP+ + LF
Sbjct: 927 QGGSNKKGKKRTAVPEDDEMDIDSSNTATTPSVSLPTIAEIAGVLPPDTLSTFTSALFPK 986
Query: 290 -AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +S + K V N++AEG+ A+ + QL++ ++ E + D ++ R+ +E DK
Sbjct: 987 SSAQKSIRYHEIAKVVENMVAEGWSAAQTVGQLYEQLMFDERVEDVKKVRLAAVFSETDK 1046
Query: 349 CLVDGADEYLQLLDVASNVIRAVC 372
LVDG+DE+L +LD+ V +C
Sbjct: 1047 RLVDGSDEHLAVLDLGVRVAGVLC 1070
>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 158/324 (48%), Positives = 216/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLAS+C+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + +SGDFD K VN + G+ A+ +++QL + + ++ + +I
Sbjct: 263 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSRLNNGTNEHIQLLNL 346
>gi|403216588|emb|CCK71084.1| hypothetical protein KNAG_0G00260 [Kazachstania naganishii CBS
8797]
Length = 350
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/328 (48%), Positives = 218/328 (66%), Gaps = 6/328 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWVEKYRPK + +V Q+ V VL TL++A+ PHMLFYGPPGTGKT+T LA+ +
Sbjct: 20 EENKPWVEKYRPKNLDEVTAQDHAVNVLKKTLKSADLPHMLFYGPPGTGKTSTILALTKE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL KSRVLELNASD+RGI++VR K+K FA + V + YPCPP+KIIILDE
Sbjct: 80 LFGPELTKSRVLELNASDERGISIVREKVKNFARLTVSKPSKNDLEKYPCPPFKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNYI+RII+PLASRC+KFRFK L E R+
Sbjct: 140 ADSMTADAQSALRRTMETYSSVTRFCLICNYITRIIDPLASRCSKFRFKSLDESNAMDRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----ITSKDLISVSGV 279
++ +E + + AL + +S GDLR+AIT LQ +++L + +TSK + ++G
Sbjct: 200 QYVAKQESVICEDGALEKILIVSSGDLRKAITLLQSSSKLRNYTGTDKVTSKQVEELAGR 259
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ L S D D VNN G+ ++SQL D + +++ + RI
Sbjct: 260 VPNDILGELVEKIASKDLDAIIAYVNNFAKSGWSGVSVISQLHDYYIMSDNFDTAFKNRI 319
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNV 367
L + D L +G +E+LQLL++ +
Sbjct: 320 SLILFDTDAKLTNGTNEHLQLLNLVVQI 347
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/363 (46%), Positives = 221/363 (60%), Gaps = 45/363 (12%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V+VL + T N PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 36 PWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + YPCPPYKIIILDEADSM
Sbjct: 96 NLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEADSM 155
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETY+ +TRF +CNYI+RII+PLASRC+KFRFK L+ E +R+ +I
Sbjct: 156 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIA 215
Query: 228 NEEGLNLDA-----EALSTLSSISQGDLRRAITYLQGAARLFGS---------------- 266
EE L+LD E L+ + IS GD+R+AITYLQ A++L S
Sbjct: 216 KEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQSASKLSSSLQLENCKNDMNEDNKG 275
Query: 267 ----------------------SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV 304
IT + +G++P ++ + + + + V
Sbjct: 276 ESTPSSRKGDEKDDEEEEKDKGLITKASIRETAGILPDTLILQMVESIKQKNEGILINLV 335
Query: 305 NNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
N+II+ G+ L+ QL D +V + I ++ +I L + DK L G DE++QLL++
Sbjct: 336 NDIISSGWSVQQLIDQLHDQLVWDDTIDSLKKNQIALTLFDTDKKLNLGTDEHIQLLNLV 395
Query: 365 SNV 367
V
Sbjct: 396 LQV 398
>gi|410079477|ref|XP_003957319.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
gi|372463905|emb|CCF58184.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
Length = 350
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 158/324 (48%), Positives = 214/324 (66%), Gaps = 6/324 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWVEKYRPK++++V Q+ V VL TLE+AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 20 EQSKPWVEKYRPKKLEEVTAQDHAVTVLKKTLESANLPHMLFYGPPGTGKTSTILALTKE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL K+RVLELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDE
Sbjct: 80 LFGPELAKTRVLELNASDERGISIVREKVKNFARLTVSKSSKEDLEKYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNYI+RII+PLASRC+KFRFK L R+
Sbjct: 140 ADSMTADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKSLEATNALDRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI----SVSGV 279
+I +E + + L + ISQGDLRRAIT LQ A++ K I ++GV
Sbjct: 200 KYISEKESVQYEEGTLEKILEISQGDLRRAITLLQSASKRISYLKVEKIRILQVEELAGV 259
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + + D + V+ I G+ +L+QL D + +D + + ++
Sbjct: 260 VPTKILHEIAEKVATKDIKIIADYVDTFIISGWSGVSVLNQLHDYYITNDDYDTDFKNKV 319
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L + D L +G +E++QLL++
Sbjct: 320 SWILFDTDAKLTNGTNEHIQLLNL 343
>gi|380016014|ref|XP_003691988.1| PREDICTED: replication factor C subunit 4-like [Apis florea]
Length = 357
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 178/363 (49%), Positives = 236/363 (65%), Gaps = 17/363 (4%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK P +K S ++S E+S AP PWVEKYRPK VKDV Q EV
Sbjct: 6 KTGK-LGPGEFKKVSNSRSKEERSGP------AP------PWVEKYRPKNVKDVVEQTEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL L+ + P++LFYGPPGTGKT+T LA A QLFG LYK RVLELNASD+RGI V
Sbjct: 53 VEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERVLELNASDERGIQV 111
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + G G R G CPP+KIIILDEADSMT AQ ALRRTME S TRF
Sbjct: 112 VREKIKSFAQLTAG-GIRDDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESHSTRFC 170
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
ICNY+SRIIEPL SRC KFRFKPL E + R+ +IC EE L ++ L + +S GD
Sbjct: 171 LICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDLKVEKPVLLKIVEVSGGD 230
Query: 250 LRRAITYLQGAARLFGSS--ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI 307
LRRAIT LQ +L G IT D++ + G++P + ++ L +C++ D+ A + V+
Sbjct: 231 LRRAITCLQSITKLKGKGIEITVDDVLEIIGIVPNKWLDELIDICKTKDYTKAEEFVDQF 290
Query: 308 IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ E Y S ++ QL + ++ + +++D+Q+A I L E + L+DG +EY+QL+++ +
Sbjct: 291 MLEAYATSQVIEQLSERIIYSNELTDKQKALIADTLGECNYRLLDGGNEYIQLMNICCGI 350
Query: 368 IRA 370
I+A
Sbjct: 351 IKA 353
>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
Length = 352
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 155/324 (47%), Positives = 216/324 (66%), Gaps = 6/324 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWVEKYRPK++ DV+ Q+ + VL TL +AN PHMLFYGPPGTGKT+T A+ +
Sbjct: 20 EHTKPWVEKYRPKKLDDVSAQDHTISVLKKTLTSANLPHMLFYGPPGTGKTSTIFALTRE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
L+GPEL K+RVLELNASD+RGI +VR K+K FA + V + YPCPPYKIIILDE
Sbjct: 80 LYGPELSKTRVLELNASDERGIAIVREKVKNFARLTVSKPSKEALEKYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTME +S VTRF ICNY++RII+PLASRC+KFRFK L E R+
Sbjct: 140 ADSMTADAQSALRRTMENHSNVTRFCLICNYVTRIIDPLASRCSKFRFKSLDESNAIGRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSITSKDLISVSGV 279
I E + + AL + IS GD+RRAIT LQ AA+ G ITS+++ ++G+
Sbjct: 200 KEISQLENVPHEEGALQRILEISNGDMRRAITLLQSAAKRLGFGELDKITSQEVEELAGL 259
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + G+ + + VN + G+ A +++QL D + + D + + +I
Sbjct: 260 VPTHILQEMLNKVSQGNVNEIIEYVNEFVKNGWSAVSVVNQLHDYYITSNDYGTDFKNKI 319
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L + D L +G +E+LQLL++
Sbjct: 320 SLLLFDADAKLANGTNEHLQLLNL 343
>gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 417
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 166/384 (43%), Positives = 234/384 (60%), Gaps = 60/384 (15%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-------------SGQR-----RGG 150
PEL KSRVLELNASD+RGI++VR K+K FA + SG+ R
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGETKTVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFR
Sbjct: 153 YPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS---- 266
FK L + RV I E ++L+ L ++ GDLR+AIT+LQ AARL G+
Sbjct: 213 FKSLDQGNAIKRVSDIAKLENVSLEDGVAEELVRVADGDLRKAITFLQSAARLVGAVQAV 272
Query: 267 -------------------------------SITSKDLISVSGVIPPEVV----EGLF-- 289
+I+ + ++GV+PP + + LF
Sbjct: 273 NGGGAGASKKGKKKVVEEDEMDVDAPPTSTPAISLPIIAEIAGVLPPATLSTFSDSLFPK 332
Query: 290 -AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
A + ++ K V N+IAEG+ A + QL++ ++ E + D ++ R+ +E DK
Sbjct: 333 SAAAKQIRYNEIAKIVENMIAEGWSAQQTVGQLYEQIMFDERVEDVKKVRLAGVFSETDK 392
Query: 349 CLVDGADEYLQLLDVASNVIRAVC 372
LVDG DE+L +LD+ V +C
Sbjct: 393 RLVDGGDEHLAVLDLGVRVAGVLC 416
>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
Length = 357
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 173/366 (47%), Positives = 231/366 (63%), Gaps = 23/366 (6%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK +P +K ST+++ +K + PWVEKYRPK V D+ Q EV
Sbjct: 6 KTGKLGAPTDVKKPSTSRAKDDKKD-------------LTPWVEKYRPKNVDDIVEQTEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V V+ ++ + P+MLFYGPPGTGKT+ A A Q+FG +YK R+LELNASDDRGI V
Sbjct: 53 VNVIRQAMKHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SMYKDRILELNASDDRGIQV 111
Query: 130 VRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186
VR KIK+FA A +G G CPP+KIIILDEADSMT AQ ALRR ME + T
Sbjct: 112 VREKIKSFALRKANPIGPD----GKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHST 167
Query: 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS 246
RF +CNY+SRII+P+ASRC KFRFKPLS+E SR+ +ICNEE L D L + S
Sbjct: 168 RFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSISRLEYICNEENLKADRSVLEKIVEAS 227
Query: 247 QGDLRRAITYLQGAARLFGSS--ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV 304
GDLR+A+ LQ RL G + IT D + V G+IP E + L+ C+ G++ +
Sbjct: 228 GGDLRQAVMCLQSITRLKGKNYEITVDDALDVIGLIPDEKINALWEACKKGNYSNVETLL 287
Query: 305 NNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364
N++ EGYP S ++ QL + V+ ++++SD+Q+ I L E D L +G+DEYLQLL +
Sbjct: 288 ENLLLEGYPGSQVIEQLNEKVIFSDELSDKQKVIIGDMLGECDYKLTEGSDEYLQLLSIF 347
Query: 365 SNVIRA 370
S ++ A
Sbjct: 348 STILIA 353
>gi|118783134|ref|XP_312782.3| AGAP003093-PA [Anopheles gambiae str. PEST]
gi|116129067|gb|EAA08477.3| AGAP003093-PA [Anopheles gambiae str. PEST]
Length = 361
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 220/328 (67%), Gaps = 4/328 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRPK V DV Q EVV VL +L T + P++L YGPPGTGKT+T LA A Q
Sbjct: 33 KHSVPWVEKYRPKSVDDVVEQAEVVAVLRESLSTTDLPNLLLYGPPGTGKTSTILAAARQ 92
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG +++K R+LELNASDDRGI V+R K+KTFA + SG R G PCPP+KI+ILDEAD
Sbjct: 93 LFG-DMFKERILELNASDDRGIAVIRNKVKTFAQL-TASGTRTDGKPCPPFKIVILDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRRTME +K TRF +CNY+SRIIEP+ SRC KFRFKPL EE + R+ +
Sbjct: 151 AMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEEKIIERLRY 210
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSGVIPPE 283
IC++EG+ +D + IS GDLRRAIT LQ RL G+ I +D++ +SGV+P
Sbjct: 211 ICDQEGVTVDDGVYKDIVDISGGDLRRAITTLQSCHRLKGAQARIERQDILEMSGVVPER 270
Query: 284 VVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+E +VC+S ++ + V N+ + Y L QL + +V + ++++Q+A IC L
Sbjct: 271 YLEEFISVCKSSNYSKLEEYVQNLSYDAYSVGQLFEQLTEYIVYNDGLTEKQKAVICDKL 330
Query: 344 AEVDKCLVDGADEYLQLLDVASNVIRAV 371
E L G EY+Q++D+ I+A+
Sbjct: 331 GECCFRLHGGGSEYIQIMDLGCITIQAL 358
>gi|405961159|gb|EKC27004.1| Replication factor C subunit 4 [Crassostrea gigas]
Length = 343
Score = 317 bits (811), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 170/349 (48%), Positives = 226/349 (64%), Gaps = 19/349 (5%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
TT P+ E K Q PWVEK+RP+ V DVA+Q+EVV VL +LE ++ P+
Sbjct: 12 TTSKDPKSLEAAGSGKGGKSKQKHVPWVEKFRPRSVDDVAYQDEVVAVLKKSLEGSDLPN 71
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+LFYGPPGTGKT+T LA A LFG E+ K RVLELNASD+RGINVVR K+K FA S
Sbjct: 72 LLFYGPPGTGKTSTILAAARSLFGAEMMKLRVLELNASDERGINVVREKVKKFAQT-TAS 130
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
G R G PCPP+KIIILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEP+AS
Sbjct: 131 GTRPDGKPCPPFKIIILDEADSMTSPAQAALRRTMEKESKSTRFCLICNYVSRIIEPIAS 190
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCAKFRFKPL++++++ R+ IC E ++ D E++ L S+GD+R+AITYLQ ARL
Sbjct: 191 RCAKFRFKPLADQILTERLQGICEAEKISYDKESIKALIDSSEGDMRKAITYLQSVARLK 250
Query: 265 GSSITSK-DLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFD 323
G SK D+ ++G + E + R+ N+ + +I++ + D
Sbjct: 251 GDEEVSKADVFEIAGA-NTYIYEISHRIHRN-----ENRFLTEVISD---------ETID 295
Query: 324 VVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372
V+++ ++ K + VDKCL+DGADEYLQL+ + + ++R +C
Sbjct: 296 VLIKV--CHSNSYEKLEKKVQVVDKCLMDGADEYLQLMALFTTMMREIC 342
>gi|328767253|gb|EGF77303.1| hypothetical protein BATDEDRAFT_91654 [Batrachochytrium
dendrobatidis JAM81]
Length = 326
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/315 (47%), Positives = 210/315 (66%), Gaps = 5/315 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW E+YRPK + +++ Q EVV VL+NT++T N PH+L YGPPGTGKT+ LA+A QL+G
Sbjct: 9 PWTERYRPKTLSEISGQNEVVAVLSNTIQTQNLPHLLLYGPPGTGKTSIILALARQLYGA 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
K R+LELNASD+RGI+V+R K+K FA + V + PPYKII+LDEADS+T
Sbjct: 69 NGLKGRLLELNASDERGIDVIREKVKNFAKITVSAAHSNA----PPYKIIVLDEADSLTT 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ+ALRR ME YSK+TRF ICNY+SRII+PLASRCAK RFKP+ ++ R+ IC+
Sbjct: 125 DAQSALRRIMENYSKITRFCLICNYVSRIIDPLASRCAKLRFKPIPMPIVIERLELICSN 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGL 288
E L+ AL L++ GDLR+AIT LQ ++ GS++T + +SG+IP V+ G+
Sbjct: 185 EKLSFAPGALDFLATSCAGDLRKAITLLQSIKKVSIGSTVTKSLVADISGIIPDSVMAGI 244
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
SG + E+ I GY + + QL +++ E + + ++++ L + D+
Sbjct: 245 IQAWSSGKVENVEAELKQTIRMGYSGTAFIQQLSNLIAEDPHLKERHKSKVAVLLGQTDR 304
Query: 349 CLVDGADEYLQLLDV 363
LVDGADE+LQ+L V
Sbjct: 305 ALVDGADEHLQILKV 319
>gi|157167248|ref|XP_001652243.1| replication factor C, 37-kDa subunit, putative [Aedes aegypti]
gi|94469174|gb|ABF18436.1| replication factor C [Aedes aegypti]
gi|108877369|gb|EAT41594.1| AAEL006788-PA [Aedes aegypti]
Length = 358
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/350 (48%), Positives = 227/350 (64%), Gaps = 9/350 (2%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
S +++ P E + K V PWVEKYRPK V DV Q EVV VL +L TA+ P
Sbjct: 13 SPSKAGPSDGSSEKRTKTHSV-----PWVEKYRPKSVDDVVEQAEVVAVLRESLSTADLP 67
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
++L YGPPGTGKT+T LA A QLFG +++K R+LELNASDDRGI V+R K+KTFA +
Sbjct: 68 NLLLYGPPGTGKTSTILAAARQLFG-DMFKERILELNASDDRGIAVIRNKVKTFAQL-TA 125
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
SG R G PCPP+KI+ILDEAD+MT AQ ALRRTME +K TRF +CNY+SRIIEP+
Sbjct: 126 SGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPIT 185
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
SRC KFRFKPL EE + R+ IC +E ++++ +A + IS GDLRRAIT LQ RL
Sbjct: 186 SRCTKFRFKPLGEEKVIERLRFICEQENVDVEDQAYREIVDISGGDLRRAITTLQSCHRL 245
Query: 264 FG--SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQL 321
G + I D++ +SGV+P + +E +VC++ ++ V N+ + Y L QL
Sbjct: 246 KGKEAKIQHTDILEMSGVVPRKYLEDFVSVCKTANYGKLEDYVRNLTYDAYSVGQLFEQL 305
Query: 322 FDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+ VV + +SD+Q++ IC L E L G EY+Q++D+ I+A+
Sbjct: 306 TEFVVLHDGLSDKQKSIICDKLGECCFRLQGGGSEYIQIMDLGCVTIQAL 355
>gi|340501071|gb|EGR27891.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 357
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/335 (46%), Positives = 218/335 (65%), Gaps = 16/335 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V++QEEVV+ L L+T N PH++F+GPPGTGKT++ LA A QL+GP
Sbjct: 12 PWVEKYRPNKIDEVSYQEEVVKSLEGVLQTGNLPHIIFHGPPGTGKTSSILAFAKQLYGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG----------------GYPC 153
Y+ R+LELNASDDRGI VVR KIK FA V + Y C
Sbjct: 72 NFYRDRILELNASDDRGIQVVREKIKKFAQQVVVKNPDKQFFFYQNQKSYQLFQIRNYKC 131
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
P YKIIILDEADSMT +AQ+ALRR +E S TRF ICNYI++IIEPLASRC KFRFKP
Sbjct: 132 PNYKIIILDEADSMTTEAQSALRRIIEDNSSTTRFCIICNYITKIIEPLASRCVKFRFKP 191
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
+ EE ++ IC++E + + +AL L IS GDLR+++ +Q A+ LF SI + +
Sbjct: 192 IVEEAQLCKLKEICDKEYIQYEDQALEKLIHISNGDLRKSVNLIQSASTLFNKSINLQTV 251
Query: 274 ISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISD 333
+ +SG IP E V L+ V + + K V I +G+ A L++Q D+++ + DI++
Sbjct: 252 LEISGSIPDEHVINLYEVLLQKNLNELRKSVQQFIYQGFSADQLINQFSDIILYSNDINE 311
Query: 334 EQQARICKCLAEVDKCLVDGADEYLQLLDVASNVI 368
++ARI + +A+ D+ L + AD LQ+L++ S ++
Sbjct: 312 IKKARIFEKIAQADQGLNERADSELQILNMFSCIL 346
>gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
Length = 418
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 170/385 (44%), Positives = 235/385 (61%), Gaps = 61/385 (15%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-------------SGQR-----RGG 150
PEL KSRVLELNASD+RGI++VR K+K FA + SG+ R
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGEAKTVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFR
Sbjct: 153 YPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI-- 268
FK L + RV I E ++L+ + L ++ GDLR+AIT+LQ AARL G+
Sbjct: 213 FKSLDQGNAVKRVSDIAKLENVSLEDDVAEELVRVADGDLRKAITFLQSAARLVGAVQAA 272
Query: 269 ----------------------------TSKDLIS------VSGVIPPEVV----EGLF- 289
TS IS ++GV+PP + + LF
Sbjct: 273 NGGGAGASKKGKKKVVVEEDEMDVDAPPTSTPAISLPIIAEIAGVLPPATLSTFSDSLFP 332
Query: 290 --AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
A + ++ K V N+IAEG+ A + QL++ ++ E I D ++ R+ +E D
Sbjct: 333 KSASAKQIRYNEIAKIVENMIAEGWSAQQTVGQLYEQIMFDERIEDVKKVRLAGVFSETD 392
Query: 348 KCLVDGADEYLQLLDVASNVIRAVC 372
K LVDG DE+L +LD+ V +C
Sbjct: 393 KRLVDGGDEHLAVLDLGVRVAGVLC 417
>gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Komagataella pastoris CBS 7435]
Length = 324
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 149/319 (46%), Positives = 225/319 (70%), Gaps = 7/319 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK++ +V+ Q V+RVL+N L++AN PH+LFYGPPGTGKT+T LA+A +LF
Sbjct: 2 STPWVEKYRPKKLDEVSAQSNVIRVLSNQLKSANMPHLLFYGPPGTGKTSTILAMARELF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GP+L KSRVLELNASD+RGI++VR K+K FA ++V + + + YPCPPYK+IILDEAD
Sbjct: 62 GPQLMKSRVLELNASDERGISIVRDKVKNFARLSVTNPTPEDKENYPCPPYKLIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ+ALRR ME YS +TRF ICNYI+RII+P+ SRC+KFRF PL+ + +
Sbjct: 122 SMTFDAQSALRRIMENYSHITRFCIICNYITRIIDPITSRCSKFRFSPLNSANSLATLKM 181
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I E L++D ++L+ + IS GDLR++I +LQ +LFG + +++G+IP +V
Sbjct: 182 ISQSEELDIDDDSLTQILDISNGDLRKSINFLQTGHKLFGED----SIENIAGLIPQNLV 237
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFD-VVVETEDISDEQQARICKCLA 344
+ L +S + + + + ++ + Y ++ +L+ L ++++ ++ EQ+ + + L
Sbjct: 238 QSLIETLQSKNLNKIYEFLYMLVLKSYNSATILTSLHSCLLLKNIYLNSEQKIEVSRILY 297
Query: 345 EVDKCLVDGADEYLQLLDV 363
E D L G+DE++Q+L++
Sbjct: 298 ETDSKLSSGSDEFIQMLNL 316
>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica CLIB122]
Length = 378
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 229/367 (62%), Gaps = 31/367 (8%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
F+ +Q + + + + AP PWVEKYRPK + DV+ Q+ V VL TL +AN
Sbjct: 5 FAKSQQAQKADGKKTSKNKAP-----PPWVEKYRPKSLDDVSSQDHAVTVLKRTLGSANL 59
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PHMLFYGPPGTGKT+T LA+A +L+GPEL K RVLELNASD+RGI +VR IK FAA V
Sbjct: 60 PHMLFYGPPGTGKTSTVLALAKELYGPELMKDRVLELNASDERGIAIVRDSIKNFAAQKV 119
Query: 143 GSGQRRGG--YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ + YPCPP+KIIILDEADSMT DAQ+ALRRTMETYS TRF ICNY++RII+
Sbjct: 120 VAPKDHIAEKYPCPPFKIIILDEADSMTTDAQSALRRTMETYSAQTRFCLICNYVTRIID 179
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
PLASRC+KFRF+ L +R+ H+ + E L+++ L + ++ GDLRRAIT LQ
Sbjct: 180 PLASRCSKFRFRLLDGNDALARLRHVSDAEQLSVEDGVLEKILEVANGDLRRAITILQSC 239
Query: 261 ARLFGSS------------------ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANK 302
+RL G S IT D+ +GVIP E ++ + C+ + +
Sbjct: 240 SRLSGESSAAQNDEDGDATMAETRPITIADVNETAGVIPTETLKAIIKACKDSKGPIGDT 299
Query: 303 EVNNIIA------EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE 356
+ ++A G+ ++ + SQ+ D+++ I +++++I + L+ DK L DGADE
Sbjct: 300 VPDILVAVKELTYSGWSSAQITSQMHDLIITDVLIEGKEKSKIAELLSVTDKRLADGADE 359
Query: 357 YLQLLDV 363
L +L++
Sbjct: 360 SLAMLNL 366
>gi|340054249|emb|CCC48545.1| putative replication factor C, subunit 2 [Trypanosoma vivax Y486]
Length = 347
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 163/347 (46%), Positives = 221/347 (63%), Gaps = 12/347 (3%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHML 86
S P + V+ M P +PWVEKYRPK + +V QEEVV+ L +TL + A+ PH L
Sbjct: 3 SIPPTKKARVEPSMDP-----RPWVEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFL 57
Query: 87 FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-G 145
F+GPPGTGKTT LA+A +LFGP+ +SRV ELNASDDRGI V+R K+K FA AVG G
Sbjct: 58 FHGPPGTGKTTAILAVAQELFGPDYIRSRVRELNASDDRGIQVIREKVKAFAQSAVGGVG 117
Query: 146 QRRGG----YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
Q+ YP PP+K+IILDEAD++ DAQ ALRR ME YS VTRF +CNY+SRII+P
Sbjct: 118 QKVQSDGNVYPVPPFKLIILDEADALLPDAQAALRRMMEDYSDVTRFCILCNYVSRIIDP 177
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ASRCAK+RFKPL + R+L + EGL + ++ L S GD+R AI YLQ A
Sbjct: 178 IASRCAKYRFKPLVRHALRERILEVATREGLRMSDASIDALDRTSGGDMRLAIMYLQHAQ 237
Query: 262 RLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQL 321
+ G +T++D + VSG +P +++ A S FD II +GYPAS +L+QL
Sbjct: 238 KAHGDDLTNEDFVEVSGKVPAGLLDNYVAALLSKKFDDVFMVTKQIIQQGYPASQVLAQL 297
Query: 322 FDVVVETE-DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
V ++ Q+ I + +V+K ++DG D+ +QLLD+ + +
Sbjct: 298 QQYFVSPACPLNSAQRGAISLKICDVEKRIMDGGDDLVQLLDLGTVI 344
>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii GT1]
gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii VEG]
Length = 357
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/348 (44%), Positives = 226/348 (64%), Gaps = 5/348 (1%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQ--PWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
+ + SS EK+ P + S+Q PWVEKYRP++V+D+AHQ E ++L LET N
Sbjct: 4 AVSASSVEKAPSPFSTAAPPRVSSAQVVPWVEKYRPRRVEDMAHQVEPKKMLRRILETGN 63
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
PH+LFYGPPGTGKT+ ALA+ +LFG E K+R+LELNASDDRGI VVR +IK +
Sbjct: 64 MPHLLFYGPPGTGKTSAALALVRELFGREEAKNRLLELNASDDRGIKVVRERIKQYTKTN 123
Query: 142 VGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
+ G+ G P +KI+ILDEAD MT+DAQ+ALRR ME +S+ TRF ICNY+ RII
Sbjct: 124 IAKGKINPETGREMPTWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRII 183
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+P+ SRC+ RF+P++ + +R+ HIC+ EGL + + A+ L ISQGDLRRA+T LQ
Sbjct: 184 DPIFSRCSPHRFEPVARDAQEARIRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQS 243
Query: 260 AARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319
AA ++ ++ ++ V+G P +V C++ A+ EV+N+I++G+ LLL
Sbjct: 244 AASIYDDNLHEDAILEVAGQPPARIVTDFLRACQASPSQ-ASSEVDNVISQGWDVCLLLQ 302
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
++ VV + + D Q+AR+ +A+ + + GA YLQLL ++ +
Sbjct: 303 EMIRQVVVSPHLKDLQKARVINDIAQKEFAVFQGASPYLQLLSLSLRI 350
>gi|383860560|ref|XP_003705757.1| PREDICTED: replication factor C subunit 4-like [Megachile
rotundata]
Length = 357
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/343 (50%), Positives = 222/343 (64%), Gaps = 9/343 (2%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S + KR P PWVEKYRPK V+DV Q EVV VL L ++ P++LFYG
Sbjct: 18 PSTSRTKEKRSAPP-----PPWVEKYRPKTVEDVVEQAEVVEVLRQCLSGSDFPNLLFYG 72
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPGTGKT+T LA A QLFG LYK R+LELNASD+RGI VVR KIKTFA + G G R
Sbjct: 73 PPGTGKTSTILAAARQLFG-SLYKDRILELNASDERGIQVVRDKIKTFAQLTAG-GMRDD 130
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
G CPP+KIIILDEADSMT AQ ALRRTME S TRF ICNY+SRIIEPL SRC KF
Sbjct: 131 GKRCPPFKIIILDEADSMTAAAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKF 190
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-- 267
RFKPL EE + R+ +I NEEGL L + S GD+RRAIT LQ RL G
Sbjct: 191 RFKPLGEEKIIERLEYISNEEGLKAGKPVLLKIVEASGGDMRRAITCLQSITRLKGKDIE 250
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE 327
IT D++ + G++P + ++ L VC++ D+ A ++ + E Y AS ++ QL + ++
Sbjct: 251 ITIDDIVEIIGIVPDKWIDELMEVCKTKDYSKAEAFIDTFMLEAYAASQVIEQLSERIIY 310
Query: 328 TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
+ + +D Q+A I L E + L+DG EY+QL+++ +I+A
Sbjct: 311 SNEFTDRQKALIADRLGECNYRLLDGGSEYIQLINLCCGIIKA 353
>gi|430814613|emb|CCJ28174.1| unnamed protein product [Pneumocystis jirovecii]
Length = 967
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 211/305 (69%), Gaps = 19/305 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + VA Q+ + VL +L++ N PH+LFYG PGTGKT+T LA+A++LFG
Sbjct: 21 PWVEKYRPQTLDQVAFQDHAISVLKKSLQSMNLPHLLFYGSPGTGKTSTILALANELFGM 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL KSRVLELNASD+RGI+++R K+K FA +AV + + CPPYKIIILDEADSMT+
Sbjct: 81 ELMKSRVLELNASDERGISIIREKVKNFARIAVSNS---SEHSCPPYKIIILDEADSMTQ 137
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ+ALRRTMETYSK+TRF ICNYI+RII PLASRC+KF+FKPLS + ++ +I +
Sbjct: 138 DAQSALRRTMETYSKITRFCLICNYITRIIGPLASRCSKFQFKPLSFQHSMEKLKYIASC 197
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-----------SITSKDLISVSG 278
E + D + L S GDLR+AIT+LQ AARL S SI+ + + +SG
Sbjct: 198 ENVKYDKGVIEMLIEQSNGDLRKAITFLQSAARLVDSEPNKSSLENTRSISVELISEISG 257
Query: 279 VIPPEVVEGLFAVCRS-----GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISD 333
+P +++ L ++C S + L ++ V+ I+AEGY A+ ++SQL D +V E IS
Sbjct: 258 TVPDHIIQHLLSICFSSKSTPSQYHLIDQYVSEIVAEGYSANQVISQLHDSIVSNELISA 317
Query: 334 EQQAR 338
EQ R
Sbjct: 318 EQLLR 322
>gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei]
gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 347
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/326 (47%), Positives = 217/326 (66%), Gaps = 7/326 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PW+EKYRPK + +V QEEVV+ L +TL + A+ PH LF+GPPGTGKTT LA+AH+LF
Sbjct: 19 RPWIEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFLFHGPPGTGKTTAILAVAHELF 78
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG----QRRGG-YPCPPYKIIILD 162
GP+ KSRV ELNASDDRGI V+R K+K+FA AVG+ Q G YP PP+K+IILD
Sbjct: 79 GPDYIKSRVRELNASDDRGIQVIREKVKSFAQTAVGNVVQKVQSDGKIYPVPPFKVIILD 138
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++ DAQ ALRR ME +S VTRF +CNY++RII+P+ASRCAK+RFKPL +E + R
Sbjct: 139 EADALLPDAQAALRRMMEDFSDVTRFCILCNYVTRIIDPIASRCAKYRFKPLIKEALYER 198
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ + + E + + ++ L +S GDLR AI YLQ A R G+ + +D + VSG +P
Sbjct: 199 ISEVASRENIQISRSSIDALDHVSGGDLRLAIMYLQYAQRANGNDLQKEDFVEVSGSVPA 258
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARICK 341
+++ A FD ++ +GYPA +L+QL D +V ++ Q+ I
Sbjct: 259 SMMQTYLAALMMKSFDEVRSVTKRLVQQGYPACQILAQLQDYIVSAACPLNSAQRGSIAL 318
Query: 342 CLAEVDKCLVDGADEYLQLLDVASNV 367
L +++K L DG D+++QLL++ S +
Sbjct: 319 KLCDIEKRLSDGCDDFVQLLELGSFI 344
>gi|395528003|ref|XP_003766124.1| PREDICTED: replication factor C subunit 4 [Sarcophilus harrisii]
Length = 302
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 152/294 (51%), Positives = 211/294 (71%), Gaps = 4/294 (1%)
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQL--FGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ P L +GPP + + A ++ +GPEL++ RVLELNASD+RGI V+R K+KTFA
Sbjct: 5 DTPISLAFGPPISDHWLPLPSQATKMHSYGPELFRQRVLELNASDERGIQVIREKVKTFA 64
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+ V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRI
Sbjct: 65 QLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRI 123
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
IEPL SRC+KFRFKPLS+++ R+L I +E + + E +S L +S+GDLR+AIT+LQ
Sbjct: 124 IEPLTSRCSKFRFKPLSDKIQYQRLLDISEKENVKISNEGISYLVKVSEGDLRKAITFLQ 183
Query: 259 GAARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLL 317
A RL G +T K + ++GV+P E + G+F+ C+SG F+ V ++I EG+ A+ L
Sbjct: 184 SATRLTGGQEVTEKVITEIAGVVPTETINGIFSACQSGSFEKLEAIVKDLIDEGHAATQL 243
Query: 318 LSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
++QL DVVVE ED++D+Q++ I + LAE+DKCL DGADE+LQL+ + + V++ +
Sbjct: 244 INQLHDVVVEKEDLTDKQKSVIAEKLAEMDKCLADGADEHLQLISLCATVMQQL 297
>gi|13242652|ref|NP_077667.1| EsV-1-182 [Ectocarpus siliculosus virus 1]
gi|13177452|gb|AAK14596.1|AF204951_181 EsV-1-182 [Ectocarpus siliculosus virus 1]
Length = 326
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 217/323 (67%), Gaps = 14/323 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP++V+DV H + + RVL +T + PH+LF+GPPGTGKT+T LA+A L G
Sbjct: 2 QPWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLG 61
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ RVLELNASD+RG++VVR KIKTF+ +++ S Q CPP+K++ILDEAD+MT
Sbjct: 62 EGNMRERVLELNASDERGLDVVRDKIKTFSKMSISSFQ----PGCPPFKLVILDEADTMT 117
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTMET+S VTRF +CNY+S+II PLASRCAKFRF L+ + M R+LHIC
Sbjct: 118 ADAQSALRRTMETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICE 177
Query: 229 EEGLNLDAEALSTLSSI---SQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
E + + + S L +I S+GD+R A+ LQ ++ +T + ++ ++G +P V
Sbjct: 178 RENIIFENCSRSVLDAIVKSSRGDMRSAVNLLQTVSQ--QPRVTPESIVEIAGEVPERVF 235
Query: 286 EGLFAVCRS-----GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
+ L++ S G F+ V+ + EGYP +LS++ VV + +I D +A IC
Sbjct: 236 DMLWSAVTSQPRQPGHFEAVTDAVSTFVGEGYPVGKVLSEIQGRVVHSGEIEDADKAAIC 295
Query: 341 KCLAEVDKCLVDGADEYLQLLDV 363
L E D+CL DGADE LQLL++
Sbjct: 296 LSLMETDRCLNDGADEELQLLNI 318
>gi|340721765|ref|XP_003399285.1| PREDICTED: replication factor C subunit 4-like [Bombus terrestris]
Length = 357
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 176/363 (48%), Positives = 232/363 (63%), Gaps = 17/363 (4%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK P +K ST++S E S S+ PWVEKYRP+ V+DV Q EV
Sbjct: 6 KTGK-LGPGEPKKASTSRSKEEHS------------GSATPWVEKYRPRTVEDVVEQAEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL L + P++LFYGPPGTGKT+T LA A QLFG LYK R+LELNASD+RGI V
Sbjct: 53 VEVLRQCLTGGDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERILELNASDERGIQV 111
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + G G R G CPP+KIIILDEADSMT AQ ALRRTME S TRF
Sbjct: 112 VRDKIKSFAQLTAG-GMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHTTRFC 170
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
ICNY+SRIIEPL SRC KFRFKPL E+ + R+ +IC EE L L + S GD
Sbjct: 171 LICNYVSRIIEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDLKASKPVLLKIVEASGGD 230
Query: 250 LRRAITYLQGAARL--FGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI 307
LRRAIT LQ RL G+ IT D+I + G++P + ++ L VC++ D+ A + ++
Sbjct: 231 LRRAITCLQSITRLKGKGTDITVDDIIEIIGIVPDKWLDDLMNVCKTKDYSKAEEFIDQF 290
Query: 308 IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ E Y S ++ QL + ++ + +++D+Q+ I L E + L+DG EY+QL+++ +
Sbjct: 291 MLEAYATSQVIEQLSERIIYSNELTDKQKTLIADRLGECNYRLLDGGSEYIQLINLCCGI 350
Query: 368 IRA 370
I+A
Sbjct: 351 IKA 353
>gi|29841325|gb|AAP06357.1| similar to GenBank Accession Number BC003335 activator 1; 37 kDa
subunit; replication factor C subunit)(RFC37)in Mus
musculus [Schistosoma japonicum]
Length = 364
Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 164/341 (48%), Positives = 218/341 (63%), Gaps = 16/341 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK + +VA+Q EVV VL + ++ P++LFYGPPGTGKT+ LA+A Q
Sbjct: 22 QKHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQ 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP------CPPYKII 159
LFGP LY RVLELNASD+RGI V+R K+K FA VAV S PPYK+I
Sbjct: 82 LFGP-LYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLI 140
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEADSMT AQ ALRRTMET + TRF CNY++RIIEP+ SRCAKFRF+PL E+
Sbjct: 141 ILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIA 200
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS---------SITS 270
+R+ +I + E L++ E L L S+ +GDLR+ IT LQ +L S SITS
Sbjct: 201 RARLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITS 260
Query: 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETED 330
+L + V+P +V++ L +G+FD + N++ EGY A + QL + ++ E
Sbjct: 261 SELDEAAAVVPTDVIKSLVKTSENGNFDDLQVIIKNLLLEGYSAHQTIYQLHEYIINDET 320
Query: 331 ISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+S Q+A I + LA D L+DGADEYLQLL + +++ +
Sbjct: 321 LSCIQKASILESLALADSRLIDGADEYLQLLAIGGTLLKTI 361
>gi|226479998|emb|CAX73295.1| hypothetical protein [Schistosoma japonicum]
Length = 364
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 164/341 (48%), Positives = 218/341 (63%), Gaps = 16/341 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK + +VA+Q EVV VL + ++ P++LFYGPPGTGKT+ LA+A Q
Sbjct: 22 QKHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQ 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP------CPPYKII 159
LFGP LY RVLELNASD+RGI V+R K+K FA VAV S PPYK+I
Sbjct: 82 LFGP-LYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLI 140
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEADSMT AQ ALRRTMET + TRF CNY++RIIEP+ SRCAKFRF+PL E+
Sbjct: 141 ILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIA 200
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS---------SITS 270
+R+ +I + E L++ E L L S+ +GDLR+ IT LQ +L S SITS
Sbjct: 201 RARLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITS 260
Query: 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETED 330
+L + V+P +V++ L +G+FD + N++ EGY A + QL + ++ E
Sbjct: 261 SELDEAAAVVPTDVIKSLVKTSENGNFDDLQVIIKNLLLEGYSAHQTIYQLHECIINDET 320
Query: 331 ISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+S Q+A I + LA D L+DGADEYLQLL + +++ +
Sbjct: 321 LSCIQKASILESLALADSRLIDGADEYLQLLAIGGTLLKTI 361
>gi|397621040|gb|EJK66073.1| hypothetical protein THAOC_13022 [Thalassiosira oceanica]
Length = 363
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 223/351 (63%), Gaps = 34/351 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++ PWVEKYRP+ ++DV+HQ E++ LTN +ET PH+LFYGPPG +T QL
Sbjct: 6 TATPWVEKYRPRSLEDVSHQTEIISTLTNAVETNRLPHLLFYGPPGGRFHSTHKC--RQL 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----------------GSGQRRGG 150
+ P K RVLELNASD+RGI+VVR KIK FA++A+ G G+
Sbjct: 64 YEPSQLKRRVLELNASDERGISVVRDKIKHFASLAIGSSSGGGSKKNFFAKKGDGEAMDA 123
Query: 151 -------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
YP PP+KIIILDEAD++T DAQ ALRR +E YSKVTRF ICNY++RIIEPLA
Sbjct: 124 EEAPSKKYPNPPFKIIILDEADTVTRDAQAALRRVIEAYSKVTRFVLICNYVTRIIEPLA 183
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNL----DAEALSTLSSISQGDLRRAITYLQG 259
SRCAKFRF PL E M R+++I +E + +AE + + ++SQGD+RRA+T LQ
Sbjct: 184 SRCAKFRFAPLPEASMKERIMYISKQEQCHFEDEKEAEVIDEILTLSQGDMRRAVTTLQS 243
Query: 260 AARLFGSS----ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV-NNIIAEGYPA 314
A L G I + ++G+ PP++++ L A+ ++ FD V NI+ EG+ A
Sbjct: 244 AHSLSGGKDGDPIKKASIAEMAGLPPPKLIDDLVAILQTKRFDAMRDFVRENIVMEGFAA 303
Query: 315 SLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVAS 365
+LS L ++ +D++DE +++I +AE DK L+DG+DE LQLLDV S
Sbjct: 304 EYVLSALMAKIIIMDDVTDEAKSKIAIKVAESDKNLIDGSDETLQLLDVCS 354
>gi|219109832|ref|XP_002176669.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411204|gb|EEC51132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 350
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 153/326 (46%), Positives = 217/326 (66%), Gaps = 4/326 (1%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
++Q ++PWVE+YRPK +++V+HQ EVV L N + T PH+L YGPPG+GKT+ ALA+
Sbjct: 11 LVQDNRPWVERYRPKSLQEVSHQTEVVATLQNAVTTGRLPHLLLYGPPGSGKTSVALALC 70
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIILD 162
QL+ P ++ RVLELNASD+RGI+VVR KIK FA++ V G YP PP+KIIILD
Sbjct: 71 RQLWHPSQWRRRVLELNASDERGISVVRNKIKHFASLTVAKGNNDMENYPNPPFKIIILD 130
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ ALRR +E +SK+TRF ICNY++R+IEPLASRCAKFRF+ L M +R
Sbjct: 131 EADTVTPDAQAALRRIIEAHSKITRFILICNYVTRVIEPLASRCAKFRFQSLPPSSMKAR 190
Query: 223 VLHICNEEGLN-LDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISVSGV 279
+ I NE+ + + + L + + GD+R+A+T LQ L G+ + L ++G+
Sbjct: 191 LEWIANEQNCSESEKDLLDDILEYADGDMRQAVTTLQSVHSLAAGGAKVDKAALAEIAGL 250
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
PP +V+ L+ S FD K V + AEG+ A LLLS L +V +D+++ +A +
Sbjct: 251 PPPAIVDMLWTALLSNSFDTMEKVVETLSAEGFSAQLLLSALVPKLVTDQDLNELSKAEL 310
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVAS 365
+AE +K +++G DE LQLL V S
Sbjct: 311 AIRIAEAEKNMIEGGDEQLQLLTVCS 336
>gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum]
Length = 354
Score = 310 bits (793), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 159/324 (49%), Positives = 222/324 (68%), Gaps = 3/324 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q+ PWVEKYRP++V D+ Q+EVV VL L+ A+ P++LFYGPPGTGKT+ A+A+ +
Sbjct: 26 QAVVPWVEKYRPRKVDDIVFQDEVVSVLKKVLKGADLPNLLFYGPPGTGKTSAAVALCRE 85
Query: 106 LF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LF P++Y RVLE+NASD+RGIN+VRT+IK FA AV S G + K+IILDEA
Sbjct: 86 LFKNPDVYSDRVLEMNASDERGINIVRTRIKEFARRAVSSRLPDGSHVLG-LKVIILDEA 144
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT+ AQ ALRRTME S+ TRFF ICNYISRII PL SRCAKFRFKPLS E R+
Sbjct: 145 DAMTDAAQAALRRTMEKESRSTRFFLICNYISRIIPPLTSRCAKFRFKPLSLESQKERLE 204
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
+IC +E + ++ AL L + GDLRR++T+LQ + + +T ++ +SG +P V
Sbjct: 205 YICEQEDVEVEQAALIELIELCGGDLRRSVTHLQTMSSCH-TKLTPSEVRHLSGAVPDSV 263
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
V L AVC +FD V +I EGY L++QLF +++ +++ D ++ I + +A
Sbjct: 264 VRELLAVCERVNFDEMFAYVESIRREGYGVYQLMTQLFSLILHNKELLDTHKSVIFEKMA 323
Query: 345 EVDKCLVDGADEYLQLLDVASNVI 368
E + L+DGADE+LQLLD+++ ++
Sbjct: 324 ECEVRLLDGADEFLQLLDLSAVIL 347
>gi|444315800|ref|XP_004178557.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
gi|387511597|emb|CCH59038.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
Length = 350
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/331 (46%), Positives = 213/331 (64%), Gaps = 9/331 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++QPWVEKYRPK + DV Q+ V VL L+T+N PHMLFYGPPGTGKT+T LA+ +
Sbjct: 16 NNTQPWVEKYRPKSLDDVYSQDHTVSVLKKNLQTSNLPHMLFYGPPGTGKTSTILAMTKE 75
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
L+GP L SR+LELNASD+RGIN+VR KIK FA + + + YPCPPYKIIILDE
Sbjct: 76 LYGPNLINSRILELNASDERGINIVRKKIKNFAKLIISKPSKDDLEKYPCPPYKIIILDE 135
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTME YS +TRF ICNY++RII+PLASRC KFRFK L+ + R+
Sbjct: 136 ADSMTSDAQSALRRTMEKYSNITRFCLICNYVTRIIDPLASRCTKFRFKSLNNDNAIERL 195
Query: 224 LHICNEEGLNLDAEALS-----TLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVS 277
I E LN++ + ++ L I+ GDLRR+IT LQ A+ ITS + ++
Sbjct: 196 KFISKNENLNVENDEINNDFYKNLLQIANGDLRRSITLLQSASNFSLDGPITSARIDELA 255
Query: 278 GVIPPEVVEGLFAVCRSGDFD-LANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQ 336
G++P V+ L + + + + NNI+ GY AS ++ QL D + + + +
Sbjct: 256 GIVPDVVITNLVDKISNKNLNEIIEFTNNNIVKLGYSASAVILQLHDYYIINSNSDTKFK 315
Query: 337 ARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ L ++D L +G++E +QL+ + N+
Sbjct: 316 NNVSYLLFDIDSKLTNGSNENIQLITLLLNI 346
>gi|406695817|gb|EKC99116.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 8904]
Length = 389
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/361 (46%), Positives = 218/361 (60%), Gaps = 48/361 (13%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 18 QPWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFG 77
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----GSGQRRGGYPCPPYKIIILDEA 164
P+L+KSRVLELNASD+RGI+VVR KIKTFA G YPCPPYK+IILDEA
Sbjct: 78 PDLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLIILDEA 137
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT+DAQ+ALRR METYS++TRF +CNY++RIIEP+ASRC+KFRF+PL + +R+
Sbjct: 138 DSMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQARME 197
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-------------GSSITSK 271
I EG+ D L + ++ GDLR+AITYLQ A RL G S ++
Sbjct: 198 MIAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQASDPPTPITAMSGKSSSAP 257
Query: 272 DLIS------------------VSGVIPPEVVE------------GLFAVCRSGDFDLAN 301
+L + +SGV+P V++ GL +G F+
Sbjct: 258 ELPTAFFPLSYLKPSELTAVHEISGVVPSSVIDNLLRSMGIEPGSGLNPTLANG-FEGVR 316
Query: 302 KEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLL 361
K V ++ EG+ +L Q+ D ++ I ++ +AE DK L +G DE LQLL
Sbjct: 317 KAVRSVGREGWSTGQVLEQVHDALIPLAAIPTIAKSNAALAIAECDKALCEGGDEELQLL 376
Query: 362 D 362
+
Sbjct: 377 E 377
>gi|350426161|ref|XP_003494352.1| PREDICTED: replication factor C subunit 4-like [Bombus impatiens]
Length = 357
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 176/363 (48%), Positives = 231/363 (63%), Gaps = 17/363 (4%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK P +K ST++S E S S+ PWVEKYRP+ V+DV Q EV
Sbjct: 6 KTGK-LGPGEPKKVSTSRSKEEHS------------GSATPWVEKYRPRTVEDVVEQAEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL L + P++LFYGPPGTGKT+T LA A QLFG LYK R+LELNASD+RGI V
Sbjct: 53 VEVLRQCLTGGDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERLLELNASDERGIQV 111
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + G G R G CPP+KIIILDEADSMT AQ ALRRTME S TRF
Sbjct: 112 VRDKIKSFAQLTAG-GMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHSTRFC 170
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
ICNY+SRIIEPL SRC KFRFKPL E+ + R+ +IC EE L L + S GD
Sbjct: 171 LICNYVSRIIEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDLKATKPVLLKIVEASGGD 230
Query: 250 LRRAITYLQGAARLFGSS--ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI 307
LRRAIT LQ RL G IT D+I + G++P + ++ L VC++ D+ A + ++
Sbjct: 231 LRRAITCLQSITRLKGKGIDITVDDIIEIIGIVPDKWLDDLMNVCKTKDYSKAEEFIDQF 290
Query: 308 IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ E Y S ++ QL + ++ + +++D+Q+ I L E + L+DG EY+QL+++ +
Sbjct: 291 MLEAYATSQVIEQLSERIIYSNELTDKQKTLIADRLGECNYRLLDGGSEYIQLINLCCGI 350
Query: 368 IRA 370
I+A
Sbjct: 351 IKA 353
>gi|156550041|ref|XP_001605078.1| PREDICTED: replication factor C subunit 4-like [Nasonia
vitripennis]
Length = 358
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/325 (50%), Positives = 219/325 (67%), Gaps = 4/325 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRPK V+DV Q EVV VL L + P++L YGPPGTGKT+T LA A QLF
Sbjct: 32 ATPWVEKYRPKTVEDVVEQGEVVEVLRQCLSGGDFPNLLLYGPPGTGKTSTILAAARQLF 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G ++K R+LELNASD+RGI VVR K+K FA + G+ R G PCPP+KIIILDEADSM
Sbjct: 92 G-SMFKERILELNASDERGIQVVREKVKKFAQLTAGN-TRPDGKPCPPFKIIILDEADSM 149
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+ AQ+ALRRTME S+ TRF ICNY+SRIIEPL SRC KFRFKPL EE + R+ +IC
Sbjct: 150 TDAAQSALRRTMEKESQTTRFCLICNYVSRIIEPLTSRCTKFRFKPLGEEKIIERLEYIC 209
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGSSITSKDLISVSGVIPPEVV 285
EE L + L + S GDLRRAIT LQ RL G +T+ D++ V+GV+P + +
Sbjct: 210 GEEDLKAEKSVLKLVVDASGGDLRRAITCLQSVTRLKGIGIEVTNNDVLEVTGVVPTKWL 269
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ L VC + +++ V+ + E Y AS ++ QL D+V+ + ++D+Q+A I + L E
Sbjct: 270 DDLLRVCETKNYNEVEAYVDKFMLEAYSASQVVDQLNDIVIYSNTLTDKQKAYIGEKLGE 329
Query: 346 VDKCLVDGADEYLQLLDVASNVIRA 370
L++G EY+Q + + +++A
Sbjct: 330 CSYRLLEGGSEYVQFMSLCCGIMQA 354
>gi|355716186|gb|AES05531.1| replication factor C 4, 37kDa [Mustela putorius furo]
Length = 272
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 151/250 (60%), Positives = 187/250 (74%), Gaps = 7/250 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 29 KKTKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 83
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 84 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 142
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 143 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 202
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 203 QQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 262
Query: 278 GVIPPEVVEG 287
GVIP E ++G
Sbjct: 263 GVIPAETIDG 272
>gi|385304250|gb|EIF48275.1| activator 1 41 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 380
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/359 (46%), Positives = 224/359 (62%), Gaps = 37/359 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +V+ Q+ V++L LETAN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 22 PWVEKYRPKNLDEVSSQKTTVQILKKNLETANLPHMLFYGPPGTGKTSTILAMAKQLYGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
L+K+RVLELNASD+RGI++VR +IK FA + V + + YPCPPYK+IILDEADSM
Sbjct: 82 RLFKTRVLELNASDERGISIVRERIKGFARLTVSRPXQEDKANYPCPPYKMIILDEADSM 141
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS +TRF ICNY++RII+PLASRC+KFRFK L E +R+ +IC
Sbjct: 142 TGDAQSALRRTMETYSGITRFCLICNYVTRIIDPLASRCSKFRFKSLDEGSALTRLEYIC 201
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI---TSKDL---ISVSGVIP 281
+E +++D L + IS+GDLRRAI YLQ +RL + ++KD + + P
Sbjct: 202 GKESIDVDTNILKEILRISEGDLRRAINYLQSVSRLLSTDSDEHSAKDADNDVEMLDAGP 261
Query: 282 P------EVVEGLFAVCRSGDFD-----LANKEVNNII--------AEGYPASLLLSQLF 322
E V +F G L K +N I EGY S+L+ L
Sbjct: 262 DSRQSKREQVREMFGFMPLGTLSEFVGLLEKKNLNKIFEFIFDKISKEGYNGSILIESLH 321
Query: 323 DVVV--ETED--------ISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
D ++ T D +S+ Q+ I K L + D L +G DE +Q+L+ A + R +
Sbjct: 322 DKLLLGSTSDEETDLSLRLSNNQKNAISKVLFDTDCRLTEGCDEGIQILNCAVKISRIL 380
>gi|154324182|ref|XP_001561405.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10]
Length = 344
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 154/297 (51%), Positives = 203/297 (68%), Gaps = 25/297 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 93 PELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYS++TRF ICNY++RII+PLASRC+KFRFK L + RV I
Sbjct: 153 MTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVREI 212
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-------------------S 267
++EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 213 ADKEGVRLEEGAVEALIKCSEGDLRKAITYLQSAARLVGAVSQEGEERDNADKMDVDEKM 272
Query: 268 ITSKDLISVSGVIPPEVVEGLFAV----CRSGDFDLANKEVNNIIAEGYPASLLLSQ 320
+T + ++GVIP +E L R ++ +K V +++A+G+ + ++SQ
Sbjct: 273 VTVSSVEDIAGVIPDNTIEKLVKAMQPRSRGVVYEAVSKVVVDMVADGWSGTQVVSQ 329
>gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB]
Length = 348
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 150/291 (51%), Positives = 199/291 (68%), Gaps = 7/291 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETED 330
+P +++ + +SGDFD K VN + G+ A+ +++QL + + ++
Sbjct: 263 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDN 313
>gi|407416746|gb|EKF37786.1| replication factor C, subunit 2, putative [Trypanosoma cruzi
marinkellei]
Length = 445
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 214/328 (65%), Gaps = 7/328 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L++ A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 115 NATPWVEKYRPMTLNEVKSQEEAVSALRASLQSSASMPHFLFHGPPGTGKTTAILAVARE 174
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGG----YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVG+ G + YP P +K+II
Sbjct: 175 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLII 234
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL E +
Sbjct: 235 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVREALY 294
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+ I E L + +L L +S GDLR AI YLQ A + GS +T ++ + VSG +
Sbjct: 295 DRIREIAKMEKLTVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSGSV 354
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P E++E + DFD ++ +G+PAS LLSQL ++ ++ +++RI
Sbjct: 355 PMELLEKYLKALVTKDFDGMYSLTKELVGQGFPASQLLSQLQQYIISLSCPLNSLERSRI 414
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNV 367
L +V++ L DG DE+LQLLD+ + +
Sbjct: 415 ALKLCDVERRLSDGGDEFLQLLDLGTTI 442
>gi|398019618|ref|XP_003862973.1| replication factor C, subunit 2, putative [Leishmania donovani]
gi|322501204|emb|CBZ36283.1| replication factor C, subunit 2, putative [Leishmania donovani]
Length = 354
Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 226/352 (64%), Gaps = 9/352 (2%)
Query: 28 SSPEKSEDEVKRKMAP-VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHM 85
SS + ++ K + AP ++ PWVEKYRP+ + +V Q+E V L L E AN PH
Sbjct: 3 SSSQPAQKRAKTEGAPDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHF 62
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
LF+GPPGTGKTT+ LA+AH+LFGP+ +SRV ELNASDDRGINVVR K+K FA AV S
Sbjct: 63 LFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSS 122
Query: 146 QRRGG------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
YP PP+K+IILDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII
Sbjct: 123 GSSVTQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRII 182
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+P+ASRCAK+RFKPL + + R+ ++ EG+ L +L L ++S GDLR AI +LQ
Sbjct: 183 DPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQS 242
Query: 260 AARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319
A + G ++ +D +SVSG +P +V++ + S + + ++AEG+ A+ +L
Sbjct: 243 AQKAKGDDLSKEDFVSVSGSVPADVMQRYLSALFSHRLEEVIQASRRLVAEGFAAAQVLL 302
Query: 320 QLFDVVVETE-DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
Q+ +V E ++ Q+ +I L + ++ L DG D+YLQLLD+ S V A
Sbjct: 303 QMQHYLVSAECPLNSAQRGKIMLKLCQTERRLADGGDDYLQLLDIGSAVCSA 354
>gi|71408237|ref|XP_806535.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70870309|gb|EAN84684.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 214/328 (65%), Gaps = 7/328 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-TANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L+ +A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 17 NATPWVEKYRPMTLSEVKSQEEAVCALRASLQPSASMPHFLFHGPPGTGKTTAILAVARE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGG----YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVGS G + YP P +K+II
Sbjct: 77 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGSVGHKVQSDGQVYPVPQFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL E +
Sbjct: 137 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRETLY 196
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+ I E + + +L L +S GDLR AI YLQ A + GS +T ++ + VSG +
Sbjct: 197 DRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSGSV 256
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P E++E + DFD I+ +G+PAS LLSQL ++ + ++ ++RI
Sbjct: 257 PMELLEKYLKALVTKDFDGMYSLTKEIVGQGFPASQLLSQLHQYIIGSSCPLNSLVRSRI 316
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNV 367
L +V++ L DG DE+LQLLD+ + +
Sbjct: 317 ALKLCDVERRLSDGGDEFLQLLDLGTTI 344
>gi|71654128|ref|XP_815689.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70880763|gb|EAN93838.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 214/328 (65%), Gaps = 7/328 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L++ A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 17 NATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPGTGKTTAILAVARE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGG----YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVG+ G + YP P +K+II
Sbjct: 77 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL E +
Sbjct: 137 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRETLY 196
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+ I E + + +L L +S GDLR AI YLQ A + GS +T ++ + VSG +
Sbjct: 197 DRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSGSV 256
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P E++E + DFD I+ +G+PAS LLSQL +V + ++ ++RI
Sbjct: 257 PMELLEKYLKALVTKDFDGMYSLTKEIVGQGFPASQLLSQLHQYIVGSSCPLNSLVRSRI 316
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNV 367
L +V++ L DG DE+LQLLD+ + +
Sbjct: 317 ALKLCDVERRLSDGGDEFLQLLDLGTTI 344
>gi|351707100|gb|EHB10019.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 361
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/331 (49%), Positives = 219/331 (66%), Gaps = 41/331 (12%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKY PK V +VA QE VV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 66 KKVKPV-----PWVEKYHPKCVDEVAFQE-VVAVLKKSLEGADLPNLLFYGPPGTGKTST 119
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRVLELN S +RGI VVR K+K FA +AV G R G PCPP+K+
Sbjct: 120 ILAAAQELFGPELFRSRVLELNGSGERGIQVVREKVKNFAQLAV-PGSRSDGKPCPPFKV 178
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALR TME SK RF CNY++RIIEPL SRC+KFRFKPLS+++
Sbjct: 179 VILDEADSMTSAAQAALRYTMEE-SKTIRF---CNYVNRIIEPLTSRCSKFRFKPLSDKI 234
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+L I +E + + E ++ L +S+GDLR+AIT LQ A ++
Sbjct: 235 QQQRLLDIAKKENVKISNEGIAYLVKVSEGDLRKAIT-LQSATQV--------------- 278
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
SG FD V N+I EG+ A+ L++Q+ D +VE +++SD+Q++
Sbjct: 279 --------------TSGSFDKLEAVVKNLINEGHAATQLVNQVRDAIVENDNLSDKQKSI 324
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
+ + LAE KCL DGADE+LQL+ + + V++
Sbjct: 325 MTEKLAEDGKCLADGADEHLQLISLCATVMQ 355
>gi|401884137|gb|EJT48309.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 2479]
Length = 389
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 166/361 (45%), Positives = 216/361 (59%), Gaps = 48/361 (13%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 18 QPWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFG 77
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----GSGQRRGGYPCPPYKIIILDEA 164
P+L+KSRVLELNASD+RGI+VVR KIKTFA G YPCPPYK+IILDEA
Sbjct: 78 PDLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLIILDEA 137
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT+DAQ+ALRR METYS++TRF +CNY++RIIEP+ASRC+KFRF+PL + +R+
Sbjct: 138 DSMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQARME 197
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----------------- 267
I EG+ D L + ++ GDLR+AITYLQ A RL +S
Sbjct: 198 MIAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQASDPPTPITAMSGKSSSAP 257
Query: 268 -----------ITSKDLISV---SGVIPPEVVE------------GLFAVCRSGDFDLAN 301
+ +L +V SGV+ V++ GL +G F+
Sbjct: 258 ALPTAFFPLSYLKPSELTAVHEISGVVSSSVIDNLLRSMGIEPGSGLNPTLANG-FEGVR 316
Query: 302 KEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLL 361
K V ++ EG+ +L Q+ D ++ I ++ +AE DK L +G DE LQLL
Sbjct: 317 KAVRSVGREGWSTGQVLEQVHDALIPLAAIPTIAKSNAALAIAECDKALCEGGDEELQLL 376
Query: 362 D 362
+
Sbjct: 377 E 377
>gi|146093994|ref|XP_001467108.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
gi|134071472|emb|CAM70161.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
Length = 354
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 217/332 (65%), Gaps = 8/332 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ + +V Q+E V L L E AN PH LF+GPPGTGKTT+ LA+AH+
Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHE 82
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG------YPCPPYKII 159
LFGP+ +SRV ELNASDDRGINVVR K+K FA AV S YP PP+K+I
Sbjct: 83 LFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLI 142
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL + +
Sbjct: 143 ILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSAL 202
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
R+ ++ EG+ L +L L ++S GDLR AI +LQ A + G ++ +D +SVSG
Sbjct: 203 YHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSGS 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQAR 338
+P +V++ + S + + ++AEG+ A+ +L Q+ +V E ++ Q+ +
Sbjct: 263 VPADVMQRYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQMQHYLVSAECPLNSAQRGK 322
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
I L + ++ L DG D+YLQLLD+ S V A
Sbjct: 323 IMLKLCQTERRLADGGDDYLQLLDIGSAVCSA 354
>gi|391326181|ref|XP_003737599.1| PREDICTED: replication factor C subunit 4-like [Metaseiulus
occidentalis]
Length = 320
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 149/320 (46%), Positives = 217/320 (67%), Gaps = 12/320 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V DVA Q+EVV VL L++ + PH+LF+GPPGTGKT+T LA+A L+G
Sbjct: 9 PWVEKYRPRTVDDVASQDEVVSVLKKCLQSGDLPHLLFFGPPGTGKTSTILALARDLYGN 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E ++ +VLELNASD+RGI+V+R K+K F+ + G+ R Y+I+ILDEADSMT
Sbjct: 69 E-FRQKVLELNASDERGISVIREKVKNFSQMTANQGKIR-------YRIVILDEADSMTR 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRRTME Y+K TRF ICNY+++II PL SRC+KFRF+PL +V+ +++ IC +
Sbjct: 121 DAQTALRRTMEKYTKTTRFCLICNYVTKIIPPLNSRCSKFRFRPLPTDVLVNKLDEICTK 180
Query: 230 EGLNL-DAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E +N ++ L L +++GD+RRA+T LQ A R+ IT +D+ +++GVIP VVE +
Sbjct: 181 ENVNFRGSDDLKFLIELAEGDMRRAVTLLQSAHRISAEKITREDIRNIAGVIPDNVVEQI 240
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ D K + + + EGY LL+QL +++ E I D ++A + + LA V+
Sbjct: 241 YT---EPVLDRLTKRMRDFVREGYSGDQLLTQLLQMIIADERIEDTKRAALLEKLAIVEH 297
Query: 349 CLVDGADEYLQLLDVASNVI 368
+ DGA E + L D+A+ ++
Sbjct: 298 RMKDGASELISLQDLAATIV 317
>gi|403350390|gb|EJY74655.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 374
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 220/349 (63%), Gaps = 5/349 (1%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T Q+ + +D+ + AP PWVEKYRP +V++V+HQ EVV L ++ T PH
Sbjct: 26 TNQTQDHEMKDQTQS--APSRPKFTPWVEKYRPSKVEEVSHQTEVVSALRQSILTGQVPH 83
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++FYGPPGTGKT+T LA++ +LFG E +K RVLELNASD+RGI +VR KIK FA + S
Sbjct: 84 LMFYGPPGTGKTSTILALSKELFGHEFFKQRVLELNASDERGIAIVREKIKKFAQRKI-S 142
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
+ CPP +IIILDEADSMT DAQ ALRR +E YS TRF ICNYIS+II+PLAS
Sbjct: 143 KHPDSSFQCPPIQIIILDEADSMTIDAQAALRRIIEQYSTNTRFCIICNYISKIIDPLAS 202
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQGDLRRAITYLQGAARL 263
RC KFRF P+++E R+ IC E +N+ ++ + L IS GDLRR+I LQ A+
Sbjct: 203 RCVKFRFSPIAKEAQIERLKMICERENVNVASDNVFNALVDISAGDLRRSINTLQTASSF 262
Query: 264 FGSSITSKDLISVSGVIPPEVVEGLFAVCRSGD-FDLANKEVNNIIAEGYPASLLLSQLF 322
+ KD+ S+SGV+P +V+ + V D F + +I +G+ L+ Q+
Sbjct: 263 KLQQLNVKDIESISGVVPEDVIRKIERVVTQTDGFSEVQQLTQELILDGFDVQQLMIQML 322
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
D + + +SD ++ARI + +AE D ++ G DE L LL S+V + +
Sbjct: 323 DYFLINDKLSDLKKARISEIVAETDVKVIQGGDEELNLLYTLSSVSKII 371
>gi|407851932|gb|EKG05623.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 214/328 (65%), Gaps = 7/328 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L++ A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 17 NATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPGTGKTTAILAVARE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGG----YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVG+ G + YP P +K+II
Sbjct: 77 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL E +
Sbjct: 137 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRETLY 196
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+ I E + + +L L +S GDLR AI YLQ A + GS +T ++ + VSG +
Sbjct: 197 DRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSGSV 256
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P E++E S +FD I+ +G+PAS LLSQL ++ + ++ ++RI
Sbjct: 257 PMELLEKYLKALVSKEFDGMYSLTKEIVGQGFPASQLLSQLHQYIIGSSCPLNSLVRSRI 316
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNV 367
L +V++ L DG DE+LQLLD+ + +
Sbjct: 317 ALKLCDVERRLSDGGDEFLQLLDLGTTI 344
>gi|66360032|ref|XP_627194.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
gi|46228833|gb|EAK89703.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
Length = 335
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 216/325 (66%), Gaps = 4/325 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
SS WVEKYRP V D++H ++VV +L++ L+ N PH+LF+GPPGTGKT+ LA++ +L
Sbjct: 5 SSNLWVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSREL 64
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEA 164
FGP YK+R+LELNASD+RGI+VVR KIK++ V G P +KI+ILDEA
Sbjct: 65 FGPNEYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVILDEA 124
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
+ MT DAQ+ALRR +E SK TRF ICNYIS+IIEPLASRCAKFRF+P+S R+
Sbjct: 125 EMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQIERLK 184
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSGVIPP 282
+IC++E ++ + L T+ ++SQGDLRR I LQ A+ LFG I+ ++ VSGV P
Sbjct: 185 YICSQEDVSYEDGVLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVSGVPPI 244
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
+++E + C+ + E +I EG+ L+ L + ++ + I D ++A +
Sbjct: 245 KIIERIINSCKILGVESILIETAKLINEGWSVELIFKGLAEFIIMCDKIDDSKKAFLMLR 304
Query: 343 LAEVDKCLVDGADEYLQLLDVASNV 367
++E D ++DG++EYL LL+V S+V
Sbjct: 305 ISEADASVIDGSNEYLTLLNVCSSV 329
>gi|342181603|emb|CCC91083.1| putative replication factor C, subunit 2 [Trypanosoma congolense
IL3000]
Length = 347
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 152/314 (48%), Positives = 212/314 (67%), Gaps = 7/314 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++PWVEKYRPK + +V QEEVV+ L +TL + A+ PH LF+GPPGTGKTT LA+AH++
Sbjct: 18 ARPWVEKYRPKSLDEVKSQEEVVQALRSTLLQGASMPHFLFHGPPGTGKTTAILAVAHEM 77
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR-----GGYPCPPYKIIIL 161
FGP+ KSRV ELNASDDRGI V+R K+K+FA AVG+ Q++ YP PP+K+IIL
Sbjct: 78 FGPDYIKSRVRELNASDDRGIQVIREKVKSFAQAAVGTVQQKVQSDGKVYPVPPFKLIIL 137
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD++ DAQ ALRR ME +S VTRF +CNY++RII+P+ASRCAK+RFKPL ++ +
Sbjct: 138 DEADALLPDAQGALRRMMEDFSDVTRFCILCNYVTRIIDPIASRCAKYRFKPLIKQALHE 197
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP 281
R+ + + E + + +++ L +S GDLR AI YLQ A + G+++ S+D + VSG +
Sbjct: 198 RISEVASRENIKISTASMNALDHVSGGDLRLAIMYLQYAQKAHGNNLESEDFVEVSGCVQ 257
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARIC 340
E + AV S +FD +I +GYPA +L+QL D VV + ++ I
Sbjct: 258 EERMREYIAVLMSNNFDGMYSMTKLLIQQGYPAHQVLAQLQDFVVGPLCTLDSAKRGAIA 317
Query: 341 KCLAEVDKCLVDGA 354
L EV+K L DG+
Sbjct: 318 LKLCEVEKRLSDGS 331
>gi|322697954|gb|EFY89728.1| activator 1 41 kDa subunit [Metarhizium acridum CQMa 102]
Length = 314
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 156/310 (50%), Positives = 213/310 (68%), Gaps = 30/310 (9%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-- 142
MLFYGPPGTGKT+T LA+A +LFGPE+ KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 143 ---GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
G +R YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII
Sbjct: 61 PTPGYSKR---YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 117
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+PLASRC+KFRFK L + R+ I + EG+ L+ A+ L S+GDLR+AIT+LQ
Sbjct: 118 DPLASRCSKFRFKSLDQGNARKRLEEIASAEGVPLEDGAIDALIRCSEGDLRKAITFLQS 177
Query: 260 AARLFGSS------------------ITSKDLISVSGVIPPEVVEGLFAVCRSGD----F 297
AARL G+S +T+K + ++GVIP + ++GL R D +
Sbjct: 178 AARLVGASAPGKDGDGDEQMDVDSKPVTAKIVEDIAGVIPGQTIDGLVDALRPRDAGQTY 237
Query: 298 DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEY 357
+K V +++A+G+ A+ ++SQL+ + E I+D + +I +EVDK LVDGADE+
Sbjct: 238 RSVSKIVEDMVADGWSATQVVSQLYQALTTDETIADAHKNKIVMVFSEVDKRLVDGADEH 297
Query: 358 LQLLDVASNV 367
L +LD+A +
Sbjct: 298 LSILDLAMRI 307
>gi|157872662|ref|XP_001684866.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
gi|68127936|emb|CAJ06571.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
Length = 354
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 155/332 (46%), Positives = 217/332 (65%), Gaps = 8/332 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ + +V Q+E V L L E AN PH LF+GPPGTGKTT+ LA+AH+
Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHE 82
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG------YPCPPYKII 159
LFGP+ +SRV ELNASDDRGI+VVR K+K FA AV S YP PP+K+I
Sbjct: 83 LFGPDYIRSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLI 142
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL + +
Sbjct: 143 ILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSAL 202
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
R+ ++ EG+ L +L L ++S GDLR AI +LQ A + G ++ +D +SVSG
Sbjct: 203 YHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSGS 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQAR 338
+P +V++ + S + + ++AEG+ A+ +L Q+ +V E ++ Q+ +
Sbjct: 263 VPADVMQQYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQMQHYLVSAECPLNSAQRGK 322
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
I L + ++ L DG D+YLQLLD+ S V A
Sbjct: 323 IMLKLCQTERRLADGGDDYLQLLDIGSAVCSA 354
>gi|357617013|gb|EHJ70534.1| replication factor C4 [Danaus plexippus]
Length = 350
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 220/352 (62%), Gaps = 13/352 (3%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K S+T P S + +K AP PWVEKYRPK + D+ Q EVV+VL L
Sbjct: 7 TGKISST-DKPSTSGVKSTKKKAPA-----PWVEKYRPKTIDDIVDQGEVVQVLRECLAG 60
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
+ PH+LFYGPPGTGKT+ LA A QLFG ++ + RVLELNASD+RGI V+R K+KTFA
Sbjct: 61 GDLPHLLFYGPPGTGKTSAILAAARQLFG-DITRERVLELNASDERGIQVIRDKVKTFAQ 119
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
+ V S R G PCPPYK++ILDEADSMT AQ ALRRTME ++ TRF ICNY+SRII
Sbjct: 120 LTV-SNTRPDGRPCPPYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSRII 178
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYLQ 258
P+ SRC+KFRFKPL+ E + R+ +C E + + D E L GDLRRA+T LQ
Sbjct: 179 PPITSRCSKFRFKPLARENVIKRLQEVCKSEAVEVGDGEVLHQAVDTCGGDLRRALTALQ 238
Query: 259 GAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLL 318
RL G IT+ LI V+G++P +V+ V +++ + V N + + Y AS LL
Sbjct: 239 CCQRLLG-KITADGLIEVTGLVPENLVDEFLNV---KNYNELERFVENFLMDAYSASQLL 294
Query: 319 SQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
QL + VV ++++Q+ I + LA L++G E +QL D+ VI A
Sbjct: 295 EQLSERVVNAGHLTNKQKCVISEKLAVCSHRLLEGGAEVMQLTDLGCTVIMA 346
>gi|401425841|ref|XP_003877405.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493650|emb|CBZ28940.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 354
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/332 (46%), Positives = 216/332 (65%), Gaps = 8/332 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ + +V Q+E V L L E AN PH LF+GPPGTGKTT+ LA+AH+
Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHE 82
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG------YPCPPYKII 159
LFGP+ +SRV ELNASDDRGINVVR K+K FA AV S YP PP+K+I
Sbjct: 83 LFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLI 142
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL + +
Sbjct: 143 ILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSAL 202
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
R+ ++ EG+ L +L L ++S GDLR AI +LQ A + G ++ +D +SVSG
Sbjct: 203 YHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSGS 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQAR 338
+P +V++ + S + + ++AEG+ A+ +L Q+ +V ++ Q+ +
Sbjct: 263 VPADVMQRYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQIQHYLVSAGCPLNSAQRGK 322
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
I L + ++ L DG D+YLQLLD+ S V A
Sbjct: 323 IMLKLCQTERRLADGGDDYLQLLDIGSAVCSA 354
>gi|238576141|ref|XP_002387929.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
gi|215448797|gb|EEB88859.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
Length = 360
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 163/352 (46%), Positives = 218/352 (61%), Gaps = 33/352 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVE +RPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 11 QPWVETHRPKTIDDVSAQQHTVAVLQKALTSTNLPHMLFYGPPGTGKTSTILALARQLFG 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI++VR KIK FA A V S + YPCPPYKIIILDE
Sbjct: 71 PDNFRSRVLELNASDERGISIVREKIKNFARQTPRAKTVSSDGKE--YPCPPYKIIILDE 128
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC---AKFRFKPLSEEVMS 220
ADSMT+DAQ ALRR METY+++TRF +CNY++R + ++ C +FRF PL +
Sbjct: 129 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTR--QNHSTSCFAMLQFRFTPLDQTSSF 186
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLIS 275
+R+ I E +++D E +++L S GDLRRAITYLQ A RL S+ I +D+
Sbjct: 187 NRLSQIAAAEHISIDDEVVNSLIVNSSGDLRRAITYLQTAHRLSASTDPPTPIIPRDIQE 246
Query: 276 VSGVIPPEVVEGLFAV----------------CRSGDFDLANKEVNNIIAEGYPASLLLS 319
++GV+P V+ V + +FD +V I EGY A+ +LS
Sbjct: 247 IAGVVPDAVINDFLRVLGIDVPESMEVDTTSQTKGANFDAIRNKVREICREGYSATQVLS 306
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
Q+ DVVV + + +++ AE DK L DGADE L +L+ A V + V
Sbjct: 307 QVHDVVVLHPTLQAQHKSQCALIFAEADKALCDGADEELWILETALRVHKVV 358
>gi|401410508|ref|XP_003884702.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
gi|325119120|emb|CBZ54672.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
Length = 387
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/347 (43%), Positives = 215/347 (61%), Gaps = 30/347 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP++V+++AHQEE ++L LET N PH+LFYGPPGTGKT+ ALA+ +LFG
Sbjct: 35 PWVEKYRPRRVEEMAHQEEPKKMLRRILETGNMPHLLFYGPPGTGKTSAALALVRELFGR 94
Query: 110 ELYKSRVLELNASDDRG---------------------------INVVRTKIKTFAAVAV 142
E K+R+LELNASDDRG I VVR +IK + +
Sbjct: 95 EEAKNRLLELNASDDRGKRKPNGVCLGSGETVRRGAPIKQDRNSIKVVRERIKQYTKTNI 154
Query: 143 GSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
G+ G P +KI+ILDEAD MT+DAQ+ALRR ME +S+ TRF ICNY+ +II+
Sbjct: 155 AKGKINPETGREMPAWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHKIID 214
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRC+ RF+P++ E +R+ HIC EGL + A+ L ISQGDLRRA+T LQ A
Sbjct: 215 PIFSRCSPHRFEPVAREAQKARIRHICESEGLAVTTGAVDALLRISQGDLRRAVTLLQSA 274
Query: 261 ARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQ 320
A ++ ++T ++ V+G P +V C++ D A+ EV+N+I++G+ LLL +
Sbjct: 275 ASIYDDNLTEDAILEVAGQPPARIVTDFLRACQASP-DAASSEVDNVISQGWDVCLLLQE 333
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ VV + + D Q+AR+ +A+ + + GA YLQLL ++ +
Sbjct: 334 MIRQVVISPHLKDLQKARVVNDIAQKEYAVFQGASPYLQLLSLSLRI 380
>gi|322705612|gb|EFY97196.1| activator 1 41 kDa subunit [Metarhizium anisopliae ARSEF 23]
Length = 314
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 156/310 (50%), Positives = 210/310 (67%), Gaps = 30/310 (9%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV---- 140
MLFYGPPGTGKT+T LA+A +LFGPE+ KSRVLELNASD+RGI++VR K+K FA +
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 141 -AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
A G ++ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII
Sbjct: 61 PAPGYSKK---YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 117
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+PLASRC+KFRFK L + R+ I + EG+ L+ A+ L S+GDLR+AIT+LQ
Sbjct: 118 DPLASRCSKFRFKSLDQGNARKRLEEIASAEGVPLEDGAIDALIRCSEGDLRKAITFLQS 177
Query: 260 AARLFGSSITSKD------------------LISVSGVIPPEVVEGLFAVCRSGD----F 297
AARL G+S KD + ++GVIP ++GL R D +
Sbjct: 178 AARLVGASAPGKDGDGDEQMDVDSKPVTVKIVEDIAGVIPAPTIDGLVEALRPRDAGQTY 237
Query: 298 DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEY 357
+K V +++A+G+ A+ ++SQL+ + E I+D + +I +EVDK LVDGADE+
Sbjct: 238 RSVSKIVEDMVADGWSATQVVSQLYQALTADETIADAHKNKIVMVFSEVDKRLVDGADEH 297
Query: 358 LQLLDVASNV 367
L +LD+A +
Sbjct: 298 LSILDLAMRI 307
>gi|407929691|gb|EKG22503.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 342
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/332 (45%), Positives = 217/332 (65%), Gaps = 38/332 (11%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + QPWVEKYRPK + DV Q+ V VL+ TL+++N PHMLFYGPPGTGKT+T LA+
Sbjct: 27 PETSALQPWVEKYRPKSLSDVNGQDHTVTVLSRTLQSSNLPHMLFYGPPGTGKTSTILAL 86
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG-------QRRGGYPCPP 155
A QL+GPEL ++RVLELNASD+RGI +VR K+K FA + + + + YPCPP
Sbjct: 87 AKQLYGPELLRTRVLELNASDERGIGIVREKVKNFARQQLSNPPAGPAGVEYKKRYPCPP 146
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+KIIILDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFRFK L
Sbjct: 147 FKIIILDEADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLD 206
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ R+ I EG+ L A++ L + +
Sbjct: 207 TGSAARRLEEIAAAEGVRLGEGAVAALVRVVE---------------------------E 239
Query: 276 VSGVIPPEVVEGLFAVCR---SGD-FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDI 331
++GVIP +E L+ + G+ ++ K V +++A+G+ AS +++QL+++V+ E +
Sbjct: 240 IAGVIPGGTMERLYEAMQPRTKGEVYNEVAKAVEDMVADGWSASQVVAQLYEMVLYDEKV 299
Query: 332 SDEQQARICKCLAEVDKCLVDGADEYLQLLDV 363
D ++ +I +E DK LVDGADE+L++LD+
Sbjct: 300 EDLKKNKITLVFSEADKRLVDGADEHLEILDL 331
>gi|169602695|ref|XP_001794769.1| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
gi|160706232|gb|EAT88110.2| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
Length = 1017
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 174/386 (45%), Positives = 237/386 (61%), Gaps = 55/386 (14%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
K A +L QP E + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T
Sbjct: 632 KGAAMLGLRQPKCEPL--STLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTI 689
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG- 150
LA+A QL+GPEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 690 LALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGE 749
Query: 151 ---------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+P
Sbjct: 750 AKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDP 809
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
LASRC+KFRFK L + RV I E + LDA L ++ GDLR+AIT+LQ AA
Sbjct: 810 LASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAA 869
Query: 262 RLFGSSIT-----------------------SKDLIS------VSGVIPPEVV----EGL 288
RL G++ T SK IS ++GVIP + + L
Sbjct: 870 RLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDAL 929
Query: 289 F--AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
F + +S ++ K V N+IAEG+ AS +SQL++ V+ E + D ++ R+ +E
Sbjct: 930 FPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSET 989
Query: 347 DKCLVDGADEYLQLLDVASNVIRAVC 372
DK LVDG DE+L +LD+ V +C
Sbjct: 990 DKRLVDGGDEHLAVLDLGVRVAGVLC 1015
>gi|320580296|gb|EFW94519.1| replication factor C subunit 2 [Ogataea parapolymorpha DL-1]
Length = 334
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 157/329 (47%), Positives = 209/329 (63%), Gaps = 28/329 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKY V+VL L+TAN PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 9 PWVEKY------------HAVQVLKRNLQTANLPHMLFYGPPGTGKTSTILAMAKELYGP 56
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
L++SRVLELNASD+RGI++VR KIK FA +++ + + YPCPPYK++ILDEADSM
Sbjct: 57 HLFRSRVLELNASDERGISIVRDKIKNFARLSISNPSKEDLEKYPCPPYKLLILDEADSM 116
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS +TRF ICNYI+RII+PLASRC+KFRFK L EE R+ +IC
Sbjct: 117 TSDAQSALRRTMETYSGITRFCLICNYITRIIDPLASRCSKFRFKMLDEENSIKRLQYIC 176
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-------GSSITSKDLISVSGVI 280
NEE + L + IS GDLR+AI +LQ ++ +T + V G +
Sbjct: 177 NEENVTASTPVLKEILRISDGDLRKAINFLQSVHKMLMPAEDEMADDVTEDQIRDVFGYL 236
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETED------ISD 333
P + + L + D D + V + I+ EGY A+L++S L DV++ +D +
Sbjct: 237 PKDQLMELIRLAEKKDMDRIFEFVTDYISKEGYNATLIISSLHDVLLLGDDSGISLSLDG 296
Query: 334 EQQARICKCLAEVDKCLVDGADEYLQLLD 362
+Q+ I + L E D L G DE +Q+LD
Sbjct: 297 KQKNSISRILFETDARLSHGCDETIQILD 325
>gi|225680958|gb|EEH19242.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb03]
Length = 374
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/339 (47%), Positives = 216/339 (63%), Gaps = 27/339 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE + VL TL+ +N PHMLFYGPPGTGKT+T LA++ LFG
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV-----AVGSGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + V YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L SR+
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRL 214
Query: 224 LHICNEEGLNL-DAEALSTLSS--ISQ--------GDLRRAITYLQGAARLFGSSITSKD 272
I E L L D S +S+ GD A +G IT +
Sbjct: 215 EEIARVEKLRLADGVRPGWWGSGLVSKPPPGKDEGGDEDMADAGDEGV-------ITVRT 267
Query: 273 LISVSGVIPPEVVEGLFAVCRSGD----FDLANKEVNNIIAEGYPASLLLSQLFDVVVET 328
+ ++GV+P ++V L + ++ +K V +I+A+G+ AS +L+QL+ ++V
Sbjct: 268 IEEIAGVVPDDIVNRLVKALQPKKARLPYEEVSKVVTDIVADGWSASQMLTQLYQIIVFD 327
Query: 329 EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ I D + I +E DK L+DGADE+L +LD+A +
Sbjct: 328 DSIEDIHKNSIVMVFSEFDKRLIDGADEHLTILDLALRI 366
>gi|380471924|emb|CCF47039.1| replication factor C subunit 2 [Colletotrichum higginsianum]
Length = 315
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/302 (50%), Positives = 207/302 (68%), Gaps = 22/302 (7%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A +L+GPE+ KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMMKSRVLELNASDERGISIVREKVKDFARMQLTN 60
Query: 144 -SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PL
Sbjct: 61 PTNDYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
ASRC+KFRFK L + R+ I EG+ L+ AL L S+GDLR+AIT+LQ AAR
Sbjct: 121 ASRCSKFRFKSLDQGNAKKRLEDIAENEGVQLEDGALDALIKCSEGDLRKAITFLQSAAR 180
Query: 263 LFGSS----------------ITSKDLISVSGVIPPEVVEGLFAVCR---SGD-FDLANK 302
L G+ +T K + ++GVIP ++ L + R GD + K
Sbjct: 181 LVGAGDKDASRDDAMDIDKKPVTVKIIEDIAGVIPENTIDELVSSIRPQGPGDTYQNVAK 240
Query: 303 EVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
V N++A+G+ A +++QL+ +V E + D Q+ +I +EVDK LVDGADE+L +LD
Sbjct: 241 VVENMVADGWSAGQVVTQLYQAIVYDETVPDVQKNKIVLIFSEVDKRLVDGADEHLSILD 300
Query: 363 VA 364
+A
Sbjct: 301 LA 302
>gi|299472904|emb|CBN80473.1| EsV-1-182 , RFC small subunit [Ectocarpus siliculosus]
Length = 326
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 212/322 (65%), Gaps = 12/322 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP++VKDV H + + RVL +T + PH+LF+GPPGTGKT+T LA+A L G
Sbjct: 2 QPWVEKYRPRRVKDVVHHDHLKRVLKGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLG 61
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E + RVLELNASD+RG++VVR KIKTF +++ S Q CPP+K++ILDEAD+MT
Sbjct: 62 EENMRERVLELNASDERGLDVVRDKIKTFCKMSISSFQ----PGCPPFKLVILDEADTMT 117
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTMET + VTRF +CNY+S+II PLASRCAKFRF L+ E M R+L+IC
Sbjct: 118 ADAQSALRRTMETQAVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLTPESMKGRLLYICE 177
Query: 229 EEGL---NLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
E + N L + S+GD+R A+ LQ ++ +T + ++ V+G +P
Sbjct: 178 RENIIFENCSRGVLDAIVKSSRGDMRSAVNLLQTVSQQ-QHRVTPESVVEVAGEVPERAF 236
Query: 286 EGLFAVCRSGD----FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
+ L++ S F+ V+ + EGYP +LS++ VV++ ++ + +A IC
Sbjct: 237 DTLWSAVTSPSHLEHFEDVVDAVSTFVGEGYPVGKVLSEIQSRVVQSGELENADKAVICL 296
Query: 342 CLAEVDKCLVDGADEYLQLLDV 363
L E D+CL DGADE LQLL++
Sbjct: 297 ELMETDRCLNDGADEELQLLNI 318
>gi|399219086|emb|CCF75973.1| unnamed protein product [Babesia microti strain RI]
Length = 340
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/321 (47%), Positives = 210/321 (65%), Gaps = 5/321 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +V+HQ V L ++T N PH++FYGPPGTGKT+ ALA+A QLFG
Sbjct: 16 PWVEKYRPKTISEVSHQINPVSALNQIVKTLNMPHLIFYGPPGTGKTSAALALARQLFGK 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ K R+LELNASDDRGI+VVR KIKT+A + + + G P PP+KI+ILDEAD M
Sbjct: 76 DGLKERILELNASDDRGIDVVREKIKTYARLNISKNRINPETGKPMPPWKIVILDEADMM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E YS +TRF FICNYI +II+PL SRC+ RF+P++++ SR++ IC
Sbjct: 136 TSDAQAALRRAIENYSTITRFIFICNYIYKIIDPLCSRCSLQRFQPIAKQAQISRLVFIC 195
Query: 228 NEEGL-NLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
+E + + EA+ L +SQGDLRR+IT LQ L+ +IT + ++G+ P VV
Sbjct: 196 EQEKISSFTNEAMEALVRVSQGDLRRSITLLQTIGSLY-KNITEDIVYDIAGIPPRVVVI 254
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
L C+ G D + V II +G+ S ++SQ+ D+V ++ D +ARI L+
Sbjct: 255 DLLKSCK-GTMDDVDTAVKIIIDQGWDVSDIMSQICDIVANDVELDDISKARISLELSNR 313
Query: 347 DKCLVDGADEYLQLLDVASNV 367
D L GA +Y QLL + ++
Sbjct: 314 DFALFQGASQYFQLLSLCHHI 334
>gi|302925691|ref|XP_003054145.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735086|gb|EEU48432.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 314
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 156/307 (50%), Positives = 207/307 (67%), Gaps = 24/307 (7%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A +L+GPE+ KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 144 -SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
S + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PL
Sbjct: 61 PSPGYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
ASRC+KFRFK L + R+ I +EG+ L+ A+ TL S+GDLR+AIT+LQ AAR
Sbjct: 121 ASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGAVDTLIKCSEGDLRKAITFLQSAAR 180
Query: 263 LFGSSITSKD------------------LISVSGVIPPEVVEGLFAVCR---SG-DFDLA 300
L G+ KD + ++GVIP +E L R SG +
Sbjct: 181 LVGAGTPEKDADGADTMDVDKKAVTVKIVEDIAGVIPESTIEDLVQAIRPKSSGPSYQNV 240
Query: 301 NKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+K V +++A+G+ A ++ QL+ + E I D Q+ +I +EVDK LVDGADE+L +
Sbjct: 241 SKVVEDMVADGWSAGQVVGQLYQALTFDETIPDPQKNKIVLIFSEVDKRLVDGADEHLSI 300
Query: 361 LDVASNV 367
LD+A V
Sbjct: 301 LDLAMRV 307
>gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila]
gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 373
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/324 (45%), Positives = 209/324 (64%), Gaps = 1/324 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++++V++QEEV++ L L + N PH++ +GPPGTGKT++ LA A QL+GP
Sbjct: 43 PWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAKQLYGP 102
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK R+LELNASDDRGI +VR KIK FA V + + CP +KIIILDEADSMT
Sbjct: 103 TFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKS-FKCPNFKIIILDEADSMTT 161
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
+AQ+ALRR +E S TRF ICNYI++IIEPL SRC KFRFKP+ E +++ IC
Sbjct: 162 EAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEICKT 221
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + EAL L IS GDLR+++ LQ A+ L+ I + + +SGV + L+
Sbjct: 222 EDIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKDIKVEVIEEISGVNYLLCINKLY 281
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ DFD + V + +GY LL Q + ++ ++D ++ ++ARI + +A DK
Sbjct: 282 KLLIGKDFDKLKEGVKQFLYQGYSPDQLLYQFSEYIISSKDFNEVKKARILEKIALADKG 341
Query: 350 LVDGADEYLQLLDVASNVIRAVCN 373
L + AD LQ+L++ S+ + + N
Sbjct: 342 LNERADSELQILNMFSSCLSVLQN 365
>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
sapiens]
gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 147/242 (60%), Positives = 180/242 (74%), Gaps = 7/242 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GV 279
GV
Sbjct: 267 GV 268
>gi|313229768|emb|CBY18583.1| unnamed protein product [Oikopleura dioica]
Length = 350
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 160/350 (45%), Positives = 216/350 (61%), Gaps = 6/350 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ET 79
++F S + S K+K AP + PW+EKYRPK V DV QEEVV +L L E
Sbjct: 2 EQFLIGGSGAKASTGGGKKKAAPRVL---PWIEKYRPKGVNDVCAQEEVVAMLKAVLIEG 58
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
P+MLFYGPPGTGKT+T LA+A +FG L RV ELNASD+RGI VVR K+K FA
Sbjct: 59 KELPNMLFYGPPGTGKTSTILAMARDMFG-NLASERVCELNASDERGIAVVREKVKNFAM 117
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
S QR G CP +K+IILDEADSMT+ AQ ALRRTME YSK TRF +CNY+SRII
Sbjct: 118 TTANS-QRADGKKCPNFKLIILDEADSMTKSAQEALRRTMEVYSKSTRFCLLCNYVSRII 176
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+P+ SR AKFRF+ L +E+ +++ HI E + + A+ L S++ GD+RRA+ +LQ
Sbjct: 177 DPITSRTAKFRFRLLPKEIQYNQIRHIREAENVQISENAVEELISVAAGDMRRAVNFLQS 236
Query: 260 AARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319
RL IT D+ V+ + P E ++ + RS ++ +V ++ +GYPA +
Sbjct: 237 LHRLHEDEITPDDVRDVAILCPAEKIDEVIREARSKSYENMLTKVQALLQDGYPAGQFMH 296
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
QL D V+ + I D Q+ I + + D L DGADE +Q+L + S + R
Sbjct: 297 QLQDAVIADDAIEDFQKVNIINQIGKADHALTDGADEKVQILAIVSVLQR 346
>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
Length = 351
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 156/322 (48%), Positives = 210/322 (65%), Gaps = 7/322 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ Q EVV+VL L + PH+LFYGPPGTGKT+ LA A QLFG
Sbjct: 32 PWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFG- 90
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ + RVLELNASD+RGI VVR K+K FA + V SG+R G PCP YK++ILDEADSMT
Sbjct: 91 DISRDRVLELNASDERGIQVVRDKVKAFAQLTV-SGKRADGRPCPSYKLVILDEADSMTT 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME ++ TRF ICNY+SRII P+ SRC+KFRFKPL+ E + R+ IC
Sbjct: 150 AAQAALRRTMERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEA 209
Query: 230 EGLNL-DAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E +++ + E L+ +GDLRRA+T LQ RL+G IT+ LI V+G++P ++V
Sbjct: 210 ENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYG-RITADGLIEVTGLVPEKLVNEY 268
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
++ ++ + V N + Y AS LL QL VV ++++Q+ I + A
Sbjct: 269 LSI---KNYSELEEFVQNFLMRAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLH 325
Query: 349 CLVDGADEYLQLLDVASNVIRA 370
L+DG E++QL D+ +I A
Sbjct: 326 RLLDGGSEFMQLTDLGCTLIMA 347
>gi|440465527|gb|ELQ34846.1| replication factor C subunit 2 [Magnaporthe oryzae Y34]
gi|440481017|gb|ELQ61644.1| replication factor C subunit 2 [Magnaporthe oryzae P131]
Length = 323
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/304 (50%), Positives = 208/304 (68%), Gaps = 23/304 (7%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PHMLFYGPPGTGKT+T LA+A +LFGPEL KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 7 PHMLFYGPPGTGKTSTVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQL 66
Query: 143 GSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+
Sbjct: 67 TNPPPGYKSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIID 126
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
PLASRC+KFRFK L +E SR+ I +EG+ L+ A+ L S+GDLR+AIT+LQ A
Sbjct: 127 PLASRCSKFRFKSLDQENARSRLEDIAAKEGVALEDGAVDALIKCSEGDLRKAITFLQSA 186
Query: 261 ARLF-----------------GSSITSKDLISVSGVIPPEVVEGLFAVCR----SGDFDL 299
ARL +T + + ++GVIP + ++ L R + +
Sbjct: 187 ARLVGAVGAAGAGQEDKMDVDSRPVTVRIIEDIAGVIPGKTIDALVEAIRPRGAALTYQA 246
Query: 300 ANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQ 359
+K V +++A+G+ A+ ++ QL+ +V E I + Q+ I +EVDK LVDG+DE+L
Sbjct: 247 VSKVVEDMVADGWSATQVVGQLYQAIVYDEGIPNIQKNEIVMVFSEVDKRLVDGSDEHLS 306
Query: 360 LLDV 363
+LD+
Sbjct: 307 ILDL 310
>gi|238484697|ref|XP_002373587.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
gi|220701637|gb|EED57975.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
Length = 320
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 155/313 (49%), Positives = 204/313 (65%), Gaps = 30/313 (9%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A LFGP LY+SR+LELNASD+RGI +VR K+K FA V +
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSH 60
Query: 144 -SGQRRG---GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
+G + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF +CNY++RII
Sbjct: 61 PTGVDKSYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRII 120
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EPLASRC+KFRFKPL R+ I E L L+ + L S GDLRRAITY+Q
Sbjct: 121 EPLASRCSKFRFKPLDNSAAGDRLAQIAKLENLELEDGVVDKLIQCSDGDLRRAITYMQS 180
Query: 260 AARLFGSS---------------------ITSKDLISVSGVIPPEVVEGLFAVCR----S 294
ARL G++ IT + + ++GVIP V++ L +
Sbjct: 181 GARLVGATGNSGRQDGGEDAEMTDASSQVITVRMVEEIAGVIPESVLDQLVQAMQPKKIG 240
Query: 295 GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGA 354
++ +K +I+A+G+ A+ LL+QL+ VV + I D Q+ +I +E+DK LVDGA
Sbjct: 241 SSYEAVSKVTTDIVADGWSATQLLAQLYRRVVYNDAIPDIQKNKIVMVFSEMDKRLVDGA 300
Query: 355 DEYLQLLDVASNV 367
DE+L +LDVA +
Sbjct: 301 DEHLSILDVALKI 313
>gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 148/321 (46%), Positives = 212/321 (66%), Gaps = 11/321 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ QEE V+ L TLET + PH++F+GPPGTGKT+ ALA+ LFG
Sbjct: 9 PWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFG- 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E ++ RV ELNASD+RGI+ VR+ +K FA++AV +G+ P+KI+ILDEADSMT
Sbjct: 68 EDFRLRVKELNASDERGIDAVRSSVKEFASLAVPNGK-------IPFKIVILDEADSMTS 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +ETYS VTRF ICNY+S+II+P+ SRCAKFRFKPL + R+ I ++
Sbjct: 121 AAQNALRRIIETYSAVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIQRLHKIFDD 180
Query: 230 EGLNLDA-EALSTLSSISQGDLRRAITYLQGAAR--LFGSSITSKDLISVSGVIPPEVVE 286
+ L++D E TL IS GDLR+AIT+ Q AA + ITS+ + S+SG P VE
Sbjct: 181 QNLSVDKEETFETLVDISGGDLRKAITFAQSAASTCIETRKITSEIITSISGAANPSDVE 240
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
F C S D+D +++ GY S + L ++V++ +I + ++ ++ +A+
Sbjct: 241 NYFHTCLSADWDTIENATTDLVYAGYDISQIFEILISLIVKSNEIPEAKKPQLILKIAQA 300
Query: 347 DKCLVDGADEYLQLLDVASNV 367
D +++ AD QLL +++++
Sbjct: 301 DGSIINRADPQFQLLGISASI 321
>gi|46108652|ref|XP_381384.1| hypothetical protein FG01208.1 [Gibberella zeae PH-1]
Length = 314
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/307 (48%), Positives = 204/307 (66%), Gaps = 24/307 (7%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA+A +L+GP++ KSRVLELNASD+RGI++VR K+K FA + + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 145 G--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PL
Sbjct: 61 PPPGYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
ASRC+KFRFK L + R+ I +EG+ L+ A+ L S+GDLR+AITYLQ AAR
Sbjct: 121 ASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGAVDALIKCSEGDLRKAITYLQSAAR 180
Query: 263 LFGSSITSKD------------------LISVSGVIPPEVVEGLFAVCR----SGDFDLA 300
L G+S + KD + ++GVIP + L + R +
Sbjct: 181 LVGASASDKDGEGDEAMDVDKKAVTVKIVEDIAGVIPDSTIGDLVSAIRPKSSGSSYQAI 240
Query: 301 NKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+ V ++A+G+ A ++ QL+ + E I D Q+ +I +EVDK LVDGADE+L +
Sbjct: 241 SDVVEKLVADGWSAGQVVGQLYQALTYDEIIPDAQKNKIVMVFSEVDKRLVDGADEHLSV 300
Query: 361 LDVASNV 367
LD++ +
Sbjct: 301 LDLSVRI 307
>gi|115384904|ref|XP_001208999.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
gi|114196691|gb|EAU38391.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
Length = 319
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 203/312 (65%), Gaps = 29/312 (9%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAV 142
MLFYGPPGTGKT+T LA+A LFGP LY+SR+LELNASD+RGI +VR KIK FA ++
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRDKIKNFARSQLSH 60
Query: 143 GSGQRR---GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
SG YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CNY++RII
Sbjct: 61 SSGMSEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRII 120
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+PLASRC+KFRFK L R+ HI E L L++ + L S+GDLRRAITY+Q
Sbjct: 121 DPLASRCSKFRFKALDNSAAGERLEHIAKLENLTLESGVVDKLIQCSEGDLRRAITYMQS 180
Query: 260 AARLFGSS--------------------ITSKDLISVSGVIPPEVVEGLFAVCR----SG 295
AARL G+ +T + + ++GVIP E+++ L +
Sbjct: 181 AARLVGAQGGNKKDGDEDSEMTDATPQPVTVRMVEEIAGVIPEEIIDRLAKAMQPVKIGS 240
Query: 296 DFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGAD 355
++ +K + +++A+G+ A+ LL QL+ VV + I D Q+ +I +E+DK L DGAD
Sbjct: 241 SYEAVSKVITDVVADGWSATQLLLQLYRRVVYNDAIPDIQKNKIVMVFSEMDKRLSDGAD 300
Query: 356 EYLQLLDVASNV 367
E+L +LD A +
Sbjct: 301 EHLSILDTALKI 312
>gi|378727800|gb|EHY54259.1| replication factor C subunit 2/4 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 216/378 (57%), Gaps = 54/378 (14%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
+AP L PWVEKYRPK + DV QE L + AN PH+L +GPPGTGKT+T L
Sbjct: 28 LAPALV---PWVEKYRPKSLDDVKSQEHATETLRRMVHAANLPHLLLFGPPGTGKTSTIL 84
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA----VAVGSGQRRGGYPCPPY 156
A+ +LFGPEL K+RV E+NASD+RG+ V+R K+K FA+ A S + R YPCPP+
Sbjct: 85 ALCRELFGPELMKTRVKEMNASDERGLTVIREKVKQFASQHLVSAPVSAEYREKYPCPPF 144
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216
K++ILDEAD++T DAQ+ALRR +E YSK TRF I N++SRII P+ASRC+KFRFK L
Sbjct: 145 KVVILDEADALTTDAQSALRRIIENYSKTTRFCLIANFVSRIIAPIASRCSKFRFKSLEG 204
Query: 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----------- 265
S+R+ I N E + + + +S GDLRRAIT LQ AARL G
Sbjct: 205 PQASARIQDILNAEHVEYEDGVVERSLQVSDGDLRRAITLLQSAARLAGAVNSNSSSDGR 264
Query: 266 ---------------------------------SSITSKDLISVSGVIPPEVVEGLFAVC 292
S I D+ ++G+ PP+ + L V
Sbjct: 265 KPIKKQQRVAEDSDDEMEDVDADTSAAAGPTKSSKIRIADINEIAGLFPPDSTDKLITVL 324
Query: 293 RSG---DFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ G ++ EVN+I A GY A+ +LS L+ ++ + + +++ ++ + +E DK
Sbjct: 325 KKGSTTNYKRIAAEVNDITASGYAANEVLSSLYSKIIFDDLVDTKKKYKLSQIFSEFDKR 384
Query: 350 LVDGADEYLQLLDVASNV 367
LVDG DE L +LD++ +
Sbjct: 385 LVDGVDEQLAMLDMSCQI 402
>gi|70951019|ref|XP_744784.1| replication factor C, subunit 2 [Plasmodium chabaudi chabaudi]
gi|56524878|emb|CAH75042.1| replication factor C, subunit 2, putative [Plasmodium chabaudi
chabaudi]
Length = 330
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 210/323 (65%), Gaps = 3/323 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK++ D+ HQ + +L ++T N PH++F+GPPGTGKT+ A+AH+L
Sbjct: 2 SNLPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEA 164
FG E RVLELNASDDRGI VVR KIK + +++ + P PP+K+++LDEA
Sbjct: 62 FGKENISERVLELNASDDRGITVVREKIKAYTRISISKNKINNETNEPLPPWKLVVLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D MTEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPLNIKKEKLL 181
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
+ICN E +N+ +AL+ + +QGDLRRA++ LQ + S IT + ++ +SG+ ++
Sbjct: 182 YICNNENINISDDALTKIIETTQGDLRRAVSVLQLCS-CIDSKITVESVLDISGLPDNDI 240
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ + C+ DF + K + +II +G+ S + L + V +DI+D + +I L+
Sbjct: 241 ILKIVDSCKVKDFKILEKTIQDIIEDGFDVSYIFKALNEYFVMCQDINDSIKYQILMELS 300
Query: 345 EVDKCLVDGADEYLQLLDVASNV 367
D L +GA +Y+QL+ AS+V
Sbjct: 301 RHDFRLHNGATKYIQLMSFASSV 323
>gi|82539183|ref|XP_724000.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23478491|gb|EAA15565.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii]
Length = 330
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 141/323 (43%), Positives = 208/323 (64%), Gaps = 3/323 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK++ D+ HQ + +L ++T N PH++F+GPPGTGKT+ A+AH+L
Sbjct: 2 SNLPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEA 164
FG E RVLELNASDDRGINVVR KIK + +++ + P PP+K+++LDEA
Sbjct: 62 FGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKINSENNEPLPPWKLVVLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D MTEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLL 181
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
+IC E +++ ALS + +QGDLRRA++ LQ + S IT ++ VSG+ +V
Sbjct: 182 YICKNENIDISDNALSKIIETTQGDLRRAVSVLQLCS-CIDSKITVDSVLDVSGLPDNDV 240
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ + C+ DF + K V +II +G+ S + L + V +DI+D + +I L+
Sbjct: 241 ILKIVDSCKMKDFKILEKTVQDIIEDGFDVSYIFKSLNEYFVMCQDINDSIKYQILMELS 300
Query: 345 EVDKCLVDGADEYLQLLDVASNV 367
D L +GA +Y+QL+ AS+V
Sbjct: 301 RHDFRLHNGATKYIQLMSFASSV 323
>gi|392867577|gb|EAS29182.2| DNA replication factor C subunit Rfc2 [Coccidioides immitis RS]
Length = 322
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/315 (48%), Positives = 204/315 (64%), Gaps = 32/315 (10%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A LFGP+LY+SR+LELNASD+RGIN+VR KIK FA + +
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSH 60
Query: 144 ----SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
+ R YPCPP+KIIILDEADSMT+DAQ+ALRRTME +S++TRF +CNY++RII
Sbjct: 61 PPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRII 120
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+PLASRC+KFRFK L +R+ I E L LD + L S+GDLRRAITY+Q
Sbjct: 121 DPLASRCSKFRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQS 180
Query: 260 AARLFGSSITSKD-----------------LISV------SGVIPPEVVEGLFAVC---R 293
AARL GS ++ K +I+V +GV+P +VV L +
Sbjct: 181 AARLVGSGLSGKSGKDESGDEVMTDADQSGVITVQTVEEIAGVVPDKVVNRLIDAMQPKK 240
Query: 294 SGD-FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVD 352
G ++ + V +I+A+G+ A +LSQ++ +V E I D Q+ I +E DK L+D
Sbjct: 241 GGSVYEGVARVVTDIVADGWSAGQMLSQMYQAIVFNESIPDIQKNDIVLVFSEYDKRLID 300
Query: 353 GADEYLQLLDVASNV 367
GADE L +LD+A +
Sbjct: 301 GADEQLSILDLALRI 315
>gi|71033715|ref|XP_766499.1| replication factor C subunit 2 [Theileria parva strain Muguga]
gi|68353456|gb|EAN34216.1| replication factor C subunit 2, putative [Theileria parva]
Length = 335
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/315 (46%), Positives = 208/315 (66%), Gaps = 8/315 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKISDVIFQTQAVSIMEQIVETFNMPHMIFHGPPGTGKTSAALAMARQIYGL 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR--GGYPCPPYKIIILDEADSM 167
E + RVLELNASD+RGI+VVR +IKT+ + + + + P YK+IILDEAD +
Sbjct: 68 EGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMI 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E YS ++RF ICNY+ +II P+ SRC+ F FKP+ R+ +IC
Sbjct: 128 TADAQAALRRVIENYSSISRFVLICNYLHKIIGPIYSRCSVFHFKPIETNSQVDRLKYIC 187
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
N+EG+ D +AL L+++S GD+R++IT LQ A L+ + IT + SVSG P EVVE
Sbjct: 188 NQEGITFDQKALEFLTTVSSGDMRKSITILQSTACLY-NEITENAINSVSGKPPKEVVER 246
Query: 288 LFAVCRS--GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+F VC++ GD + KEV + +G+ S + Q+ + VVE + I D ++++I LA
Sbjct: 247 IFEVCKNPEGDVESVCKEV---VYDGWDISAIFQQISEYVVECDFIGDIEKSKISLELAN 303
Query: 346 VDKCLVDGADEYLQL 360
D L+ G +Y QL
Sbjct: 304 RDFALLQGGSQYFQL 318
>gi|322797318|gb|EFZ19436.1| hypothetical protein SINV_09794 [Solenopsis invicta]
Length = 353
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/319 (46%), Positives = 201/319 (63%), Gaps = 17/319 (5%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK +P +K ST++ +K + PWVEKYRP+ V D+ Q EV
Sbjct: 39 KTGKLGAPAEVKKPSTSRVKDDKKD-------------LTPWVEKYRPRNVDDIVEQTEV 85
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V V+ +E + P+MLFYGPPGTGKT+ A A Q+FG +YK R+LELNASDDRGI V
Sbjct: 86 VNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SMYKDRILELNASDDRGIQV 144
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + + G CPP+KI+ILDEADSMT AQ ALRR ME S TRF
Sbjct: 145 VRDKIKSFA-LRRANPNGPDGKKCPPFKIVILDEADSMTGAAQTALRRIMEKESHSTRFC 203
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
+CNY+SRII+P+ASRC KFRFKPL++E +R+ +ICNEE L D L + S GD
Sbjct: 204 LVCNYLSRIIKPIASRCTKFRFKPLTDEKSIARLEYICNEENLKADRSVLEKIVQASGGD 263
Query: 250 LRRAITYLQGAARLFGSS--ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI 307
LR+A+ LQ RL G IT D + V G++P + + L+ C+ G+++ K + N+
Sbjct: 264 LRQAVMCLQSITRLKGKDYEITVNDALDVIGLVPHDQINKLWEACKKGNYNNVQKLLENL 323
Query: 308 IAEGYPASLLLSQLFDVVV 326
+ EGYP S ++ QL + ++
Sbjct: 324 LLEGYPGSQVIEQLNERII 342
>gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 147/314 (46%), Positives = 205/314 (65%), Gaps = 11/314 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ QEE V+ L TLET + PH++F+GPPGTGKT+ ALA+ LFG
Sbjct: 9 PWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFGD 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ ++ RV ELNASD+RGI+ VR+ IK FA++AV +G+ P+KI+ILDEADSMT
Sbjct: 69 D-FRLRVKELNASDERGIDAVRSSIKEFASLAVPNGK-------IPFKIVILDEADSMTS 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +ETYS VTRF ICNY+S+II+P+ SRCAKFRFKPL + R+ I +
Sbjct: 121 AAQNALRRIIETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFED 180
Query: 230 EGLNLDAE-ALSTLSSISQGDLRRAITYLQGAARL--FGSSITSKDLISVSGVIPPEVVE 286
+ L++D+E TL +IS GDLR+AIT+ Q AA ITS+ + S+SG P VE
Sbjct: 181 QNLSVDSEDTYETLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGAPNPADVE 240
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
F C S D+D +++ GY + L +++V+T +I + ++ + +A+
Sbjct: 241 NYFKTCLSADWDTIENATIDLVYAGYDIGQIFEILINLIVKTNEIPEAKKPELILKIAQA 300
Query: 347 DKCLVDGADEYLQL 360
D +++ AD QL
Sbjct: 301 DGAIINRADPQFQL 314
>gi|307205986|gb|EFN84112.1| Replication factor C subunit 4 [Harpegnathos saltator]
Length = 360
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/338 (46%), Positives = 212/338 (62%), Gaps = 17/338 (5%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK + +K ST++S +K + PWVEKYRPK V D+ Q EV
Sbjct: 6 KTGKLGASVEVKKPSTSRSKEDKKD-------------LTPWVEKYRPKSVDDIVEQTEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V V+ +E + P+MLFYGPPGTGKT+ A A Q+FG +Y+ R+LELNASDDRGI V
Sbjct: 53 VNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SIYRDRILELNASDDRGIQV 111
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + + R G CPP+KIIILDEADSMT AQ ALRR ME + TRF
Sbjct: 112 VRDKIKSFA-LRRANPTRPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHSTRFC 170
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
+CNY+SRII+P+ SRC KFRFKPLS+E +R+ +ICNEE L + L + + S GD
Sbjct: 171 LVCNYLSRIIKPITSRCTKFRFKPLSDEKSIARLEYICNEENLMANRNVLEKIVAASGGD 230
Query: 250 LRRAITYLQGAARLFG--SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI 307
LR+A+ LQ RL G IT D + V G++P E + L+ C+ G ++ + N+
Sbjct: 231 LRQAVMCLQSITRLKGIEYEITVDDALDVIGLVPDEKINTLWETCKKGSYNDIETLLENL 290
Query: 308 IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ EGYPAS ++ QL + ++ ED++D+Q+ I L +
Sbjct: 291 LLEGYPASQVIDQLNERIIFCEDLNDKQKTMIGDMLGD 328
>gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis
mellifera]
Length = 303
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 155/292 (53%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V+DV Q EVV VL L+ + P++LFYGPPGTGKT+T LA A QLFG
Sbjct: 6 PWVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFG- 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
LYK RVLELNASD+RGI VVR KIK+FA + G G R G CPP+KII+LDEADSMT
Sbjct: 65 SLYKERVLELNASDERGIQVVREKIKSFAQLTAG-GMRDDGKSCPPFKIIVLDEADSMTG 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S TRF ICNY+SRIIEPL SRC KFRFKPL E + R+ +IC E
Sbjct: 124 AAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKE 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSGVIPPEVVEG 287
E L ++ L + +S GDLRRAIT LQ +L G IT D++ + G++P + ++
Sbjct: 184 EDLKVEKPVLLKIVEVSGGDLRRAITCLQSITKLKGKDIEITVDDVLEIIGIVPDKWLDE 243
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
L VC++ D+ A + V+ + E Y S ++ QL + ++ + +++D+Q+A I
Sbjct: 244 LIDVCKTKDYSKAEEFVDQFMLEAYATSQVIEQLSERIIYSNELTDKQKALI 295
>gi|68070283|ref|XP_677053.1| replication factor C, subunit 2 [Plasmodium berghei strain ANKA]
gi|56497014|emb|CAH96737.1| replication factor C, subunit 2, putative [Plasmodium berghei]
Length = 330
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 208/323 (64%), Gaps = 3/323 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK++ D+ HQ + +L ++T N PH++F+GPPGTGKT+ A+AH+L
Sbjct: 2 SNLPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEA 164
FG E RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEA
Sbjct: 62 FGKENINERVLELNASDDRGINVVREKIKAYTRISISKNKINTETNEQLPPWKLVVLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D MTEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLL 181
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
+IC E +++ ALS + +QGDLRRA++ LQ A S IT ++ VSG+ +V
Sbjct: 182 YICKNENIDISDNALSKIIETTQGDLRRAVSVLQLCA-CIDSKITVDSVLDVSGLPGNDV 240
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ + C+ +F + K + +II +G+ S + L + V ++DI+D + +I L+
Sbjct: 241 ILKIVNSCKMKNFKILEKTIQDIIEDGFDVSYIFKALNEYFVMSQDINDSIKYQILMELS 300
Query: 345 EVDKCLVDGADEYLQLLDVASNV 367
D L +GA +Y+QL+ AS+V
Sbjct: 301 RHDFRLHNGATKYIQLMSFASSV 323
>gi|300121957|emb|CBK22531.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/317 (49%), Positives = 206/317 (64%), Gaps = 8/317 (2%)
Query: 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119
+ DV+HQEE + L +++ N PH+LFYGPPGTGKT+T LA+ H+LFGP+L RVLE+
Sbjct: 1 MDDVSHQEEALNALRRSVKEGNLPHLLFYGPPGTGKTSTILALTHELFGPDL-SDRVLEM 59
Query: 120 NASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
NASD+RGI+V+R K+ FA +V Q GYP PPYKIII+DEADS+T DAQ+ALRR M
Sbjct: 60 NASDERGIDVIREKVILFARQSVR--QSIPGYPSPPYKIIIMDEADSLTMDAQSALRRVM 117
Query: 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239
E YS+VTRF FICNYIS+II L+SRCA+F F L + R+ IC EE + ++ EAL
Sbjct: 118 EQYSRVTRFCFICNYISKIIPALSSRCARFEFGALPRGSVLERLSFICGEEKIEIENEAL 177
Query: 240 STLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGLF----AVCRS 294
+ S+GDLR I LQ A + G IT KDL S++ IP V+ L+ A ++
Sbjct: 178 DFIFDHSRGDLRAGIQLLQNAETVNRGKKITVKDLESITLNIPKTVLFRLWDTMEATKKA 237
Query: 295 GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGA 354
+ V+ I +GYP S LLS + D VV E +SD Q+A I LA DK VDG
Sbjct: 238 SSIAKLRQVVDAICMDGYPVSALLSVISDRVVGDEKLSDAQKAEIALILANADKATVDGC 297
Query: 355 DEYLQLLDVASNVIRAV 371
DE L LLDV ++++ +
Sbjct: 298 DEELTLLDVCCSIVKCL 314
>gi|195345297|ref|XP_002039206.1| GM22851 [Drosophila sechellia]
gi|194134432|gb|EDW55948.1| GM22851 [Drosophila sechellia]
Length = 326
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 208/351 (59%), Gaps = 27/351 (7%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S + D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGTGDKSQGAPAARRKLPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQI 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIV 179
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRC+KFRFK L E+ + R+ +IC EG + L+G
Sbjct: 180 PITSRCSKFRFKALGEDKVIDRLKYICEMEG---------------------SCYRLKGP 218
Query: 261 ARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQ 320
+ I + DL +SGVIP +E +CRSG++ + V I Y ++ Q
Sbjct: 219 EHV----INTADLFEMSGVIPEYYLEDYLEICRSGNYQRLEQFVREIGFSAYSVGQMMEQ 274
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+ +V+ ++D Q+A IC L E L DG EYLQ++D+ +I A+
Sbjct: 275 FVEFIVDHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDLGCCIILAL 325
>gi|339257864|ref|XP_003369118.1| replication factor C subunit 4 [Trichinella spiralis]
gi|316966678|gb|EFV51223.1| replication factor C subunit 4 [Trichinella spiralis]
Length = 357
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 156/346 (45%), Positives = 205/346 (59%), Gaps = 28/346 (8%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVL--------------------------TNTLETA 80
S + + RPK V D+A+Q+EVV VL N L+
Sbjct: 5 SKELTITSSRPKIVDDIAYQDEVVAVLKKSLTSNDKLRLCLMILYFVEHLIRFANILDNY 64
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
P++LFYGPPGTGKT+ LA+ Q+FG E+Y+ RVLELNASD+RGI+V+R K+K F+
Sbjct: 65 FIPNLLFYGPPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQF 124
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
A S GG CPP K++ILDEADSMT+ AQ ALRRTME SK TRF ICNYIS IIE
Sbjct: 125 A-ASEITEGGKKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIE 183
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRCAKFRFKPL+ E+ R+ IC E +++D ALS+L S GDLRRAI LQ A
Sbjct: 184 PITSRCAKFRFKPLTLEIQIERLRKICENESVSIDDAALSSLISFCDGDLRRAINTLQSA 243
Query: 261 ARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319
A I D+ + ++P E VE A+CR G + K V + E Y A +
Sbjct: 244 ASFKDKKEIVQTDIEEICQIVPEEFVEQFIAICRKGSHENMEKLVLQLQREAYSAYQFII 303
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVAS 365
QL D +++ +SD +A+ LA + ++ GADE LQL+D+ +
Sbjct: 304 QLHDKLIDDLMVSDLARAKFLSKLAVCENRILAGADETLQLMDLGT 349
>gi|403221343|dbj|BAM39476.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 336
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 143/314 (45%), Positives = 201/314 (64%), Gaps = 5/314 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKLSDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGL 67
Query: 110 ELYKSRVLELNASDDRG-INVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADS 166
E + RVLELNASD+RG I+VVR +IKT+ + + + + P YKIIILDEAD
Sbjct: 68 EGMRERVLELNASDERGRIDVVRDRIKTYTRINISNNKINPETNRVMPNYKIIILDEADM 127
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
+T DAQ ALRR +E YS ++RF ICNY+ +II P+ SRC+ F FKP+ R+ +I
Sbjct: 128 ITADAQAALRRVIENYSGISRFILICNYLHKIIGPIYSRCSVFHFKPIDTSSQVKRLEYI 187
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
C++EG+ D +AL L+ +S GD+R+ IT LQ A L+ + IT + SVSG P +VE
Sbjct: 188 CSKEGIKYDTKALEFLTKVSSGDMRKGITILQSTASLY-NEITENAVYSVSGQPPRSLVE 246
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+F CR D D+ +I+ EG+ S + Q+ D VV ++ I D +++I LA
Sbjct: 247 RIFEECRKKDGDV-EAMCRDIVHEGWDVSAIFQQICDYVVNSDAIGDVDKSKISLELAHR 305
Query: 347 DKCLVDGADEYLQL 360
D L+ G +Y QL
Sbjct: 306 DYALLQGGSQYFQL 319
>gi|84998148|ref|XP_953795.1| replication factor C subunit (RPC2 ) [Theileria annulata]
gi|65304792|emb|CAI73117.1| replication factor C subunit (RPC2 homologue) , putative [Theileria
annulata]
Length = 336
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 205/318 (64%), Gaps = 13/318 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGL 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR--GGYPCPPYKIIILDEADSM 167
E + RVLELNASD+RGI+VVR +IKT+ + + + + P YK+IILDEAD +
Sbjct: 68 EGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMI 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E YS ++RF ICNY+ +II P+ SRC+ F FKP+ R+ +IC
Sbjct: 128 TADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFHFKPIETNSQIDRLKYIC 187
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQ---GAARLFGSSITSKDLISVSGVIPPEV 284
N+EG+ D + L+T+SS GD+R++IT LQ G+ + IT + SVSG P V
Sbjct: 188 NQEGITFDPKFLTTISS---GDMRKSITILQVILGSTACLYNEITENAIYSVSGKPPKRV 244
Query: 285 VEGLFAVCR--SGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
VE +F VCR GD + K+ I+ +G+ S + Q+ + VVE++ I D ++++I
Sbjct: 245 VESIFEVCRRPEGDVESVCKQ---IVHDGWDISSIFQQICEYVVESDSIGDIEKSKISLE 301
Query: 343 LAEVDKCLVDGADEYLQL 360
LA D L+ G +Y QL
Sbjct: 302 LANRDFALLQGGSQYFQL 319
>gi|312377422|gb|EFR24254.1| hypothetical protein AND_11259 [Anopheles darlingi]
Length = 328
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 145/287 (50%), Positives = 196/287 (68%), Gaps = 4/287 (1%)
Query: 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119
V+DV Q EVV VL +L TA+ P++L YGPPGTGKT+T LA A QLFG +++K R+LEL
Sbjct: 34 VEDVVEQAEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLFG-DMFKERILEL 92
Query: 120 NASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
NASDDRGI V+R K+KTFA + SG R G PCPP+KI+ILDEAD+MT AQ ALRRTM
Sbjct: 93 NASDDRGIAVIRNKVKTFAQL-TASGTRADGKPCPPFKIVILDEADAMTHAAQAALRRTM 151
Query: 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239
E +K TRF +CNY+SRIIEP+ SRC KFRFKPL EE + R+ +IC++E + +D
Sbjct: 152 EKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEERIIERLRYICDQEQVTVDEAVY 211
Query: 240 STLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSGVIPPEVVEGLFAVCRSGDF 297
+ IS GD+RRAIT LQ RL G+ I +D++ +SGV+P +E AVC+S D+
Sbjct: 212 KDIVDISGGDMRRAITTLQSCHRLKGAGARIERQDILEMSGVVPERYLEEFLAVCKSSDY 271
Query: 298 DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ V N+ + Y L QL + +V + ++++Q+A +C+ L
Sbjct: 272 SKLEEYVQNLSYDAYSVGQLFEQLTEYIVYNDGLTEKQKALLCEKLG 318
>gi|156088043|ref|XP_001611428.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798682|gb|EDO07860.1| conserved hypothetical protein [Babesia bovis]
Length = 336
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 137/318 (43%), Positives = 205/318 (64%), Gaps = 4/318 (1%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
++ + PWVEKYRP + D+ + + + +E+ + PHM+F+GPPGTGKT+ ALAIA
Sbjct: 1 MKGNVPWVEKYRPASLDDIVFHTNAMTTMRHIVESYDMPHMIFHGPPGTGKTSAALAIAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILD 162
Q++GPE K RVLELNASD+RGINVVR +IKT+ + + S + + G P +K+IILD
Sbjct: 61 QIYGPEGMKERVLELNASDERGINVVRERIKTYTRLNISSNRVNTQTGRVMPNFKMIILD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD +T DAQ ALRR +E +S ++RF ICNY+ +II P+ SRC+ F FKP+S++ R
Sbjct: 121 EADMITPDAQAALRRIIENFSNISRFILICNYVHKIIGPIYSRCSAFHFKPISQDAQIER 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ +IC E L + AL L+ +SQGD+RR++T LQ A LF + +T + + +VSG P
Sbjct: 181 LRYICTAESLEYEDHALDFLTQVSQGDMRRSVTILQSTASLF-NKVTEEAVRNVSGYPPK 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
E+V +FA C+ D+ + II +G+ + L Q+ + VV + ++D Q+A I
Sbjct: 240 EIVNEIFATCKGTTQDV-EELCKKIIYDGWEVATLFQQISEYVVNSASLTDVQKATITIE 298
Query: 343 LAEVDKCLVDGADEYLQL 360
L+ + L+ G +Y QL
Sbjct: 299 LSGRELALIQGGLQYFQL 316
>gi|302502708|ref|XP_003013315.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
gi|291176878|gb|EFE32675.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
Length = 326
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 202/314 (64%), Gaps = 36/314 (11%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-- 142
MLFYG PGTGKT+T LA++ LFGP L +SRVLELNASD+RGIN+VR KIK FA + +
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLFQ 60
Query: 143 --GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
R YPCPP+KIIILDEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIID 120
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ASRC+KFRFK L SR++ I E L+L+ + TL S GDLR+AIT++Q +
Sbjct: 121 PVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSS 180
Query: 261 ARL--FGSS------------------ITSKDLISVSGVIPPEVVEGLFAVC----RSGD 296
ARL +GS IT + + VSG++P V++ + A R+
Sbjct: 181 ARLARYGSGKKKDSSDKDMELDDVKPRITVRSIEEVSGLVPETVMQRVVAALRPSKRASK 240
Query: 297 FDLANKEVNNIIAEGYPASLLLSQ--------LFDVVVETEDISDEQQARICKCLAEVDK 348
++ + V +++A+G+ AS +LSQ + V++ E ISD Q+ +I K +E DK
Sbjct: 241 YEEISSLVADLVADGWSASQVLSQNVLLTSFKTYQAVLQDESISDVQKNQILKVCSEFDK 300
Query: 349 CLVDGADEYLQLLD 362
LVDGADE+L LD
Sbjct: 301 RLVDGADEHLSTLD 314
>gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H]
gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi
strain H]
Length = 330
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/320 (42%), Positives = 201/320 (62%), Gaps = 3/320 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGR 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEAD M
Sbjct: 65 DNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + +V ++L+IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPIDVKKEKLLYIC 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
EG+N+ +AL + +QGDLRRA++ LQ + IT + ++ VSG+ +++
Sbjct: 185 KSEGINILDDALDKIIETTQGDLRRAVSILQLCS-CIDPMITLESVLDVSGLPADDIISK 243
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ C+ D K V +II +GY + + L + V + D +++I L+ D
Sbjct: 244 IIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSRHD 303
Query: 348 KCLVDGADEYLQLLDVASNV 367
L GA +Y+QL+ AS+V
Sbjct: 304 YRLHSGATKYIQLMSFASSV 323
>gi|390371040|dbj|GAB64921.1| replication factor C subunit 2 [Plasmodium cynomolgi strain B]
Length = 342
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 200/320 (62%), Gaps = 3/320 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 17 PWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGR 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEAD M
Sbjct: 77 DNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADMM 136
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L+IC
Sbjct: 137 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYIC 196
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
EG+N+ +AL + +QGDLRRA++ LQ + IT + ++ VSG+ +++
Sbjct: 197 KSEGINILDDALGKIIETTQGDLRRAVSILQLCS-CIDPMITLESVLDVSGLPADDIISK 255
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ C+ D K V +II +GY + + L + V + D +++I L+ D
Sbjct: 256 IIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSRHD 315
Query: 348 KCLVDGADEYLQLLDVASNV 367
L GA +Y+QL+ AS+V
Sbjct: 316 YRLHSGATKYIQLMSFASSV 335
>gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax Sal-1]
gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax]
Length = 330
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 200/320 (62%), Gaps = 3/320 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGR 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEAD M
Sbjct: 65 DNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L+IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKDKLLYIC 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
EG+N+ +AL + +QGDLRRA++ LQ + IT + ++ VSG+ +++
Sbjct: 185 KSEGINILDDALDKIIETTQGDLRRAVSILQLCS-CIDPMITLESVLDVSGLPADDIISK 243
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ C+ D K V ++I +GY + + L + V + D +++I L+ D
Sbjct: 244 IIDACKMKDLKNVEKAVQDVIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSRHD 303
Query: 348 KCLVDGADEYLQLLDVASNV 367
L GA +Y+QL+ AS+V
Sbjct: 304 YRLHSGATKYIQLMSFASSV 323
>gi|302665246|ref|XP_003024235.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
gi|291188282|gb|EFE43624.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
Length = 336
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/324 (46%), Positives = 203/324 (62%), Gaps = 46/324 (14%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-- 142
MLFYG PGTGKT+T LA++ LFGP L +SRVLELNASD+RGIN+VR KIK FA + +
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQ 60
Query: 143 --GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
R YPCPP+KIIILDEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIID 120
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ASRC+KFRFK L SR++ I E L+L+ + TL S GDLR+AIT++Q +
Sbjct: 121 PVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSS 180
Query: 261 ARL--FGSS------------------ITSKDLISVSGVIPPEVVEGLFAVC----RSGD 296
ARL +GS IT + + VSG++P V++ + A R+
Sbjct: 181 ARLARYGSGKKKDSSDKEMELDDVKPRITVRSIEEVSGLVPETVMQRVVAALRPSKRASK 240
Query: 297 FDLANKEVNNIIAEGYPASLLLSQL------------------FDVVVETEDISDEQQAR 338
++ + V +++A+G+ AS +LSQ+ + V++ E ISD Q+ +
Sbjct: 241 YEEISSLVADLVADGWSASQVLSQVYLLLPQPLRNVLLTSFKTYQAVLQDESISDVQKNQ 300
Query: 339 ICKCLAEVDKCLVDGADEYLQLLD 362
I K +E DK LVDGADE+L LD
Sbjct: 301 ILKVCSEFDKRLVDGADEHLSTLD 324
>gi|312075109|ref|XP_003140271.1| replication factor C [Loa loa]
gi|307764567|gb|EFO23801.1| replication factor C [Loa loa]
Length = 308
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 144/285 (50%), Positives = 182/285 (63%), Gaps = 3/285 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-G 108
PWVEKYRP++V++VA Q EVV VL LE A+ P++LFYGPPGTGKT+ A+A+ QLF
Sbjct: 22 PWVEKYRPRKVEEVAFQNEVVSVLKKVLEGADLPNLLFYGPPGTGKTSAAIALCRQLFRN 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E Y RV+E+NASD+RGIN+VR KIK FA AV S G P K+IILDEAD+MT
Sbjct: 82 TETYHDRVMEMNASDERGINIVRNKIKEFARRAVSS-HLPDGSPVVGLKVIILDEADAMT 140
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRRTME S+ TRFF ICNYI+RII+PL SRCAKFRFK +S E R+ IC
Sbjct: 141 TPAQAALRRTMEKESRTTRFFLICNYITRIIDPLTSRCAKFRFKSISSESQGKRLEWICQ 200
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E + D A+ L + GD+R+++T LQ + + S D+ G IP +VVE
Sbjct: 201 NENIEFDPLAIDELIELCDGDMRKSVTALQTISSCHKKLLPS-DVRQFLGAIPDDVVERF 259
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISD 333
CRS + D V +I EGY LL Q F + + ED++D
Sbjct: 260 LTACRSCNHDQLYACVESIRREGYGVYQLLKQFFYICLHLEDLTD 304
>gi|440801293|gb|ELR22313.1| Replication factor C protein [Acanthamoeba castellanii str. Neff]
Length = 296
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 144/322 (44%), Positives = 200/322 (62%), Gaps = 50/322 (15%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+V DVAHQEEVVR L +L+T N PH+L YGPPGTGKT+TALAI H+L+GP
Sbjct: 17 PWVEKYRPKKVDDVAHQEEVVRALKKSLDTGNLPHLLLYGPPGTGKTSTALAIGHELYGP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL+K+RV+ELNASD+RGI
Sbjct: 77 ELFKTRVMELNASDERGI------------------------------------------ 94
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
N +R ++++S+V +Y R II+PLASRCAKFRF+PL + M +++ IC+
Sbjct: 95 ---NVIRSKVKSFSQVATA--AASYNGRQIIDPLASRCAKFRFRPLEGDTMGDKLVAICS 149
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-SSITSKDLISVSGVIPPEVVEG 287
+E L++ EAL T+ SIS GDLR+AIT LQ + L+ +T ++ V+GVIPP+ V+
Sbjct: 150 QENLHITEEALRTVVSISGGDLRKAITTLQSVSSLYDEKEVTEDAIVEVAGVIPPKKVDR 209
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
L C SG F V ++ +GY ++L+LSQ+ D +V+ +S++Q+A I K LA D
Sbjct: 210 LMDACASGSFFRLQSAVTDMTMDGYSSALVLSQMHDRIVDAA-LSNKQKAEIMKRLAAAD 268
Query: 348 KCLVDGADEYLQLLDVASNVIR 369
+ LVD ADE+LQL DV + ++R
Sbjct: 269 QALVDSADEFLQLFDVCAFMMR 290
>gi|443926001|gb|ELU44750.1| replication factor C [Rhizoctonia solani AG-1 IA]
Length = 1949
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/328 (46%), Positives = 196/328 (59%), Gaps = 52/328 (15%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA++ QLFGPEL+++RVLELNASD+RGI++VR KIK FA +
Sbjct: 1 MLFYGPPGTGKTSTILALSRQLFGPELFRTRVLELNASDERGISIVREKIKNFARQTPRA 60
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-------- 196
+ YPCPPYKIIILDEADSMT+DAQ ALRR ME Y+K+TRF +CNY++
Sbjct: 61 AEANSKYPCPPYKIIILDEADSMTQDAQAALRRIMENYAKITRFCLVCNYVTRCVELNLT 120
Query: 197 ----------RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS 246
RIIEPLASRC+KFRF PL SR+ HI E +++ EA++ L S S
Sbjct: 121 GLFPSKYLVNRIIEPLASRCSKFRFHPLDVSSTRSRLEHIVKLENIDISPEAVTALISTS 180
Query: 247 QGDLRRAITYLQGAARLFGS-----SITSKDLISVSGVIPPEVV-------------EGL 288
GDLRR+ITYLQ AARL S SI++ D+ ++GV+P V+ EG+
Sbjct: 181 DGDLRRSITYLQSAARLSASQEPSPSISASDIQEIAGVVPDAVMNRFSSAVGIELPDEGM 240
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ D D EVN I+ EG+ + LLS Q A DK
Sbjct: 241 DIDRVAKDIDGIRNEVNRIMQEGFSVAQLLS----------------QTACAAVFAAADK 284
Query: 349 CLVDGADEYLQLLDVASNVIRAVCNMPE 376
L DGADE LQLL++ V +A +P+
Sbjct: 285 ALCDGADEELQLLEIGLGVWKAAIRVPQ 312
>gi|154341867|ref|XP_001566885.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064210|emb|CAM40408.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 296
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 196/292 (67%), Gaps = 7/292 (2%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PH LF+GPPGTGKTT+ LA+AH+LFGP+ +SRV ELNASDDRGINVVR K+K FA AV
Sbjct: 2 PHFLFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAV 61
Query: 143 GSG-----QRRGG-YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
S Q G YP PP+K+IILDEAD++ DAQ ALRR ME +S VTRF +CNY+S
Sbjct: 62 SSNGSSVTQSDGKVYPVPPFKLIILDEADALLPDAQGALRRMMEDFSDVTRFCILCNYVS 121
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RII+P+ASRCAK+RFKPL + + R+ ++ EG+ L +L L ++S GDLR AI +
Sbjct: 122 RIIDPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLQALDTVSGGDLRLAIMH 181
Query: 257 LQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASL 316
LQ A + G+ +T +D ISVSG +P +V++ + S + + ++AEG+ A+
Sbjct: 182 LQSAQKANGNDLTKEDFISVSGSVPADVMQRYISALFSHRLEEVIQASRRLVAEGFAAAQ 241
Query: 317 LLSQLFDVVVETE-DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+L QL ++ E ++ Q+ +I L + ++ L DG D+YLQLLD+ S V
Sbjct: 242 VLLQLQSYLLSAECPLNSAQRGKIMLKLCQTERRLADGGDDYLQLLDIGSVV 293
>gi|124801405|ref|XP_001349685.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
gi|3845290|gb|AAC71957.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
Length = 330
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 196/320 (61%), Gaps = 3/320 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSM 167
E RVLELNASDDRGINVVR KIK + +++ + P +K+++LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L+IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
E +++ +AL + ++GDLRRA++ LQ + + IT ++ VSG+ +V
Sbjct: 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQLCS-CINTKITLNSVLDVSGLPSDNIVYK 243
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ C+ D L K V +II +G+ + + + V + D + +I L+ D
Sbjct: 244 IIDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLELSRHD 303
Query: 348 KCLVDGADEYLQLLDVASNV 367
L GA +Y+QLL AS+V
Sbjct: 304 YRLHCGATQYIQLLSFASSV 323
>gi|11559504|gb|AAG37987.1|AF071409_1 replication factor C subunit 2 [Plasmodium falciparum]
Length = 330
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 195/320 (60%), Gaps = 3/320 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSM 167
E RVLELNASDDRGINVVR KIK + +++ + P +K+++LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L+IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
E +++ +AL + ++GDLRRA++ LQ + + IT ++ VSG+ +V
Sbjct: 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQLCS-CINTKITLNSVLDVSGLPSDNIVYK 243
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ C+ D L K V +II +G+ + + + V + D + +I L D
Sbjct: 244 IIDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLELFRHD 303
Query: 348 KCLVDGADEYLQLLDVASNV 367
L GA +Y+QLL AS+V
Sbjct: 304 YRLHCGATQYIQLLSFASSV 323
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/231 (55%), Positives = 166/231 (71%), Gaps = 2/231 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V+++AHQ EVV L + T N PH+LFYGPPG GKT+ LA+A +LFGP
Sbjct: 24 PWVEKYRPARVEELAHQPEVVGALKEAVGTGNLPHLLFYGPPGNGKTSAILALARELFGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI+V+R K+K FA ++V + G PP+KII+LDEADSMT+
Sbjct: 84 ELWRDRVLELNASDERGIDVIRDKVKKFAQISVRAVAPGSGKSAPPFKIIVLDEADSMTK 143
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR +E Y++VTRF ICNY+SRIIEPL SRCAKFRF+PLS+E R+ +I N
Sbjct: 144 DAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAKFRFEPLSDESQRGRLEYIANC 203
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLISVSG 278
EG+ + A+ L S GDLR AI LQ + +IT ++++ SG
Sbjct: 204 EGVKMANGAMEALLGTSNGDLRSAINTLQMVSSCLSDDEAITVEEILEASG 254
>gi|442749365|gb|JAA66842.1| Putative replication factor c subunit rfc4 [Ixodes ricinus]
Length = 274
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 128/214 (59%), Positives = 157/214 (73%), Gaps = 2/214 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEK RPK V DVAHQ+EVV VL +L A+ P++LFYGPPGTGKT+T LA++ +LFG
Sbjct: 60 PWVEKSRPKTVDDVAHQDEVVSVLKKSLLGADLPNLLFYGPPGTGKTSTILALSRELFG- 118
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++YKSR+LELNASD+RGI VVR KIK F+ + R G PCPP+KI+ILDEADSMT
Sbjct: 119 DMYKSRILELNASDERGIQVVREKIKNFSQL-TAHATRPDGRPCPPFKIVILDEADSMTP 177
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME K TRF ICNYISRIIEPL SRC+KFRFKPL ++++ R+ IC
Sbjct: 178 SAQAALRRTMEKQPKTTRFCLICNYISRIIEPLTSRCSKFRFKPLPKDILLERLQKICTS 237
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
E + D E L +GD+RRAIT +Q ++L
Sbjct: 238 ENVQCDDEVFDFLMEACEGDMRRAITLIQSVSKL 271
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 266 bits (681), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 143/314 (45%), Positives = 199/314 (63%), Gaps = 12/314 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ WVEKYRPK + +V Q+E+++ L + ++ N PH+LF GPPGTGKT TA+A+A LF
Sbjct: 3 TEIWVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLF 62
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E+++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEAD++
Sbjct: 63 G-EVWRENFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEADAL 113
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRRTME YSKV RF CNY+SRIIEP+ SRCA F+FKP+ +E M R+ I
Sbjct: 114 TADAQAALRRTMEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPVPKEAMKKRLKEIA 173
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
EGL +D EAL L IS GD R+AI LQGAA L IT + L ++ PE +
Sbjct: 174 ENEGLEIDDEALEVLIYISGGDFRKAINALQGAAAL-DKRITPEILYQITATARPEELRK 232
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ G++ A + N++AE G ++SQLF ++ + ++ ++ + + L E+
Sbjct: 233 IIDTALKGNYLQAKDMLENLMAEYGMSGEDVVSQLFREIMYS-NLDEKLKVVLIDKLGEI 291
Query: 347 DKCLVDGADEYLQL 360
D L +GA E +QL
Sbjct: 292 DFRLTEGASELIQL 305
>gi|406607522|emb|CCH40993.1| Replication factor C subunit 2 [Wickerhamomyces ciferrii]
Length = 316
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/303 (45%), Positives = 194/303 (64%), Gaps = 23/303 (7%)
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRG 149
TGKT+T LA+ +L+GPEL K+RVLELNASD+RGI++VR K+K FA + V S +
Sbjct: 14 STGKTSTILALTKELYGPELSKTRVLELNASDERGISIVREKVKNFARLTVSNPSSEDLE 73
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNYI+RII+PLASRC+KF
Sbjct: 74 KYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKF 133
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---- 265
RFKPL R+ HI +E + L+ L + I+ GDLR+AIT+LQ AARL
Sbjct: 134 RFKPLDNNDALLRLQHIQQQENIRLEDGVLEEVLKIASGDLRKAITFLQSAARLHSRLKI 193
Query: 266 -----------------SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNII 308
IT K + ++G +P +V++G+ + +F K V++ I
Sbjct: 194 GLEDEDGDLELDDQDSQEQITIKSIREIAGSVPKDVLDGILKISEEKNFQKIFKIVDDTI 253
Query: 309 AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVI 368
+EG+ +++QL D ++ + S EQ+ + + L E D+ L +G DE+LQ+L++ + +
Sbjct: 254 SEGWSGVDIVNQLHDELILNDLYSSEQKNQFSQILFETDQRLSNGTDEHLQILNLITKIS 313
Query: 369 RAV 371
+ +
Sbjct: 314 QVI 316
>gi|170577995|ref|XP_001894218.1| replication factor C, 37kDa subunit [Brugia malayi]
gi|158599258|gb|EDP36928.1| replication factor C, 37kDa subunit, putative [Brugia malayi]
Length = 315
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/320 (45%), Positives = 192/320 (60%), Gaps = 34/320 (10%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-G 108
PWVEKYRP++V++VA Q EVV VL L+ A+ P++LFYGPPGTGKT+ A+A+ QLF
Sbjct: 22 PWVEKYRPRKVEEVAFQNEVVSVLKKVLQGADLPNLLFYGPPGTGKTSAAIALCRQLFRN 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ Y+ RV+E+NASD+RGIN+VR KIK FA AV S G P K+IILDEAD+MT
Sbjct: 82 TDTYRDRVMEMNASDERGINIVRNKIKEFARRAVSS-HLPDGSPVVGLKVIILDEADAMT 140
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRRTME S+ TRFF ICNYI+RII+PL SRCAKFRFK +S E R+ IC
Sbjct: 141 TPAQAALRRTMERESRTTRFFLICNYITRIIDPLTSRCAKFRFKSISSESQEKRLKWICQ 200
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E + D A+S L + GD+R+++T LQ + I + D+ G +P +VV+
Sbjct: 201 NENIEFDPLAISELIELCDGDMRKSVTALQTISSCHKKLIPA-DVRQFLGAVPDDVVQQF 259
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
A CRS + + + NI EGY E +
Sbjct: 260 VASCRSRNHNQLYACIENIRREGY-------------------------------GECEM 288
Query: 349 CLVDGADEYLQLLDVASNVI 368
++DGA+E+LQLLD + V+
Sbjct: 289 RILDGANEFLQLLDFGTVVM 308
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
IC +EG+ + + L L IS GD R+AI LQGAA + G + + + ++ PE
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEE 230
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+ L G+F A + ++ ++ E G +++QLF ++ + I D + ++ L
Sbjct: 231 MTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREII-SMPIKDSLKVQLIDKL 289
Query: 344 AEVDKCLVDGADEYLQL 360
EVD L +GA+E +QL
Sbjct: 290 GEVDFRLTEGANERIQL 306
>gi|353241984|emb|CCA73760.1| probable RFC2-DNA replication factor C, 41 KD subunit
[Piriformospora indica DSM 11827]
Length = 358
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 204/375 (54%), Gaps = 56/375 (14%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P VK + P LQ PWVEKYRPK + +V+ Q+ V VL C H+ +
Sbjct: 5 PTAKTQPVKATIDPKLQ---PWVEKYRPKTMDEVSSQDHAVSVLKKHYSRQTC-HICYSM 60
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQ 146
P L++ RVLELNASD+RGI +VR KIK FA AV S
Sbjct: 61 DP-------------------LFRHRVLELNASDERGIAIVREKIKDFARQTPKAVTSAA 101
Query: 147 RRGG-YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
G YPCPPYK+IILDEADSMT+DAQ ALRR METY+K+TRF ICNY++RIIEPL SR
Sbjct: 102 SDGKVYPCPPYKLIILDEADSMTQDAQGALRRIMETYAKITRFCLICNYVTRIIEPLTSR 161
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C+KFRFKPL S R+ I E + + + +S L + S GDLRRAITYLQ +RL
Sbjct: 162 CSKFRFKPLDTSSTSIRLKEIAAAENVEVSDDVVSALVTTSGGDLRRAITYLQSCSRLAH 221
Query: 266 SS----------ITSKDLISVSGVIPPEVVEGLFAV-------------------CRSGD 296
++ I +D+ ++GV+P V+E AV R+
Sbjct: 222 ATVDEVNKAPQKIRPEDVQEIAGVVPDHVIESFAAVLGVEVDGASKNSMSIDNATVRAKT 281
Query: 297 FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE 356
FD K+V I EGY A+ +LSQL DVV+ + ++A L E DK L DGADE
Sbjct: 282 FDDVRKKVKEISREGYSAAQILSQLHDVVILHPRLDARRKAACALILGEADKALCDGADE 341
Query: 357 YLQLLDVASNVIRAV 371
L L+ + +A+
Sbjct: 342 ELWTLETGLRIWKAL 356
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 139/313 (44%), Positives = 195/313 (62%), Gaps = 14/313 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ QEEV + L+T N PHMLFYGPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNASD+RGI +R ++K FA A +G PYK++ILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGITTIRERVKEFARTAPMGKA---------PYKLVILDEADNMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y+ VTRF I NY+SRII+P+ SRCA FRF PL ++ + R+ I ++
Sbjct: 118 DAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLREIASK 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + EAL + +SQGD+R+AI LQ AA IT + + G I P+ + L
Sbjct: 178 EGVKVTNEALEAIWDVSQGDMRKAINTLQAAAAT-AKEITPEVIYKTVGYIEPKDIVDLV 236
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQL-FDVVVETEDISDEQQARICKCLAEVD 347
SGDF A ++ ++ E G + +L + ++ ++ DE + I + A++D
Sbjct: 237 NTVFSGDFVKARDKLRTLMYEHGVSGTEILRAIQRQIMGGAINVPDEAKVEIAEAAADID 296
Query: 348 KCLVDGADEYLQL 360
L +G+DE +QL
Sbjct: 297 YRLTEGSDEEIQL 309
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/313 (44%), Positives = 195/313 (62%), Gaps = 14/313 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ QEEV + L+T N PHMLFYGPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNASD+RGI +R ++K FA A +G PYK+IILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGITTIRERVKEFARTAPMGKA---------PYKLIILDEADNMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y+ VTRF I NY+SRII+P+ SRCA FRF PL ++ + R+ I +
Sbjct: 118 DAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLRDIASR 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + EAL + ISQGD+R+AI LQ AA IT + + G I P+ + L
Sbjct: 178 EGVKVTDEALEAIWDISQGDMRKAINTLQ-AATATAREITPEVVYKTVGYIEPKDIVDLV 236
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVD 347
+ +GDF A ++ ++ E G + +L + ++ ++ DE + I + A++D
Sbjct: 237 NIALNGDFIRARDKLRTLMYEHGVSGTEILRVIQRQIMSGAINVPDEAKVEIAETAADID 296
Query: 348 KCLVDGADEYLQL 360
L +G+DE +QL
Sbjct: 297 YRLTEGSDEEIQL 309
>gi|167393611|ref|XP_001740649.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165895162|gb|EDR22913.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 329
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 207/307 (67%), Gaps = 9/307 (2%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QEEV+++L ++L++ P++LF+GPPG+GKTT+ LA+AH+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLDSG-LPNLLFFGPPGSGKTTSILAVAHELF-QG 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K RVLELNAS+ RGI +VRT +K +A V P YK+IILDE+D++T D
Sbjct: 65 YFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYD-----GIPDYKLIILDESDALTPD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME ++K TRF ICNYISRI+ P++SRC KFRF L +E++S+R+ IC +E
Sbjct: 120 AQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G ++ EA+ +S +S+GDLR I LQ ++ S+T +D+ +V+GV+P + + +
Sbjct: 180 GFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGVVPSKEITEIIH 239
Query: 291 VCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAEVDK 348
+C++G DL K ++ ++ + Y A +LSQL DV +E +++++++ + +A+ D
Sbjct: 240 LCQNGSVNDLYLKAMSLVVEQNYSADSILSQLRDVYIEDCVNLTNQERCLFLQLIAQSDA 299
Query: 349 CLVDGAD 355
L+D D
Sbjct: 300 TLIDKTD 306
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 143/312 (45%), Positives = 192/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +QEE+VR L +E N PH+LF GPPGTGKTT A A+AH LFG E
Sbjct: 10 WAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFG-E 68
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI +RTK+K FA R P P+KI++LDEAD+MT D
Sbjct: 69 NYRQYMLELNASDERGIETIRTKVKEFA--------RSRTPPGIPFKIVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + +R+ IC +E
Sbjct: 121 AQQALRRLMEMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G D EAL T+ IS+GD+RRAI LQ AA L +T + + V G+ P+ + +
Sbjct: 181 GCQYDEEALETIYEISEGDMRRAINILQAAAAL--GKVTVEAVYKVVGLAHPKEIREIIK 238
Query: 291 VCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ G F A K++ + I G + ++ Q+ V E + DE + I E+
Sbjct: 239 LALDGRFTDARKKLRELMINYGLSGTDVIKQIHKEVFGPELKLPDEVRVLIADYAGEIQF 298
Query: 349 CLVDGADEYLQL 360
LV+GAD+ +QL
Sbjct: 299 RLVEGADDEIQL 310
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 196/315 (62%), Gaps = 14/315 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ WVEKYRP+ +K+V QEEV++ L +E N PH+LF GPPGTGKT +A+A+A LF
Sbjct: 5 AEIWVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARDLF 64
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADS 166
G E ++ +E+NASD+RGI+VVR KIK FA A +G P+KII LDEAD+
Sbjct: 65 G-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGDA---------PFKIIFLDEADA 114
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
+T DAQ ALRRTME YSK+ RF CNY+SRIIEP+ SRCA F+F+P+ E M R+L I
Sbjct: 115 LTPDAQAALRRTMEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEAMRKRLLEI 174
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
C EG+ + + L L +S GD R+AI LQGAA L G + ++ + ++ PE +
Sbjct: 175 CENEGVKITEDGLEALIYVSNGDFRKAINALQGAAAL-GKVVDAEAIYQITATARPEELA 233
Query: 287 GLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
L G F A ++ ++ E G ++SQLF ++ + + ++ + + L E
Sbjct: 234 NLLETALEGKFMEARSILDKLMIEYGMSGEDVVSQLFREIL-SSGMDEKMKVLLIDKLGE 292
Query: 346 VDKCLVDGADEYLQL 360
+D L +GA E +QL
Sbjct: 293 IDFRLTEGAHERIQL 307
>gi|255638181|gb|ACU19404.1| unknown [Glycine max]
Length = 149
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 121/130 (93%), Positives = 126/130 (96%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKTTTALAIAHQLFGPELYK RVLELNASDDRGINVVRTKIK FAAVAVG+
Sbjct: 1 MLFYGPPGTGKTTTALAIAHQLFGPELYKFRVLELNASDDRGINVVRTKIKDFAAVAVGT 60
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
QR+ GYPCPP+KII+LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLAS
Sbjct: 61 NQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLAS 120
Query: 205 RCAKFRFKPL 214
RCAKFRFKPL
Sbjct: 121 RCAKFRFKPL 130
>gi|67478786|ref|XP_654775.1| Replication factor C subunit 4 [Entamoeba histolytica HM-1:IMSS]
gi|56471850|gb|EAL49389.1| Replication factor C subunit 4, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449704169|gb|EMD44462.1| replication factor C subunit 4, putative [Entamoeba histolytica
KU27]
Length = 329
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 206/307 (67%), Gaps = 9/307 (2%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QEEV+++L ++L + P++LF+GPPG+GKTT+ LA+AH+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELF-QG 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K RVLELNAS+ RGI +VRT +K +A V P YK+IILDE+D++T D
Sbjct: 65 YFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYD-----GTPDYKLIILDESDALTPD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME ++K TRF ICNYISRI+ P++SRC KFRF L +E++S+R+ IC +E
Sbjct: 120 AQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G ++ EA+ +S +S+GDLR I LQ ++ S+T +D+ +V+GV+P + + +
Sbjct: 180 GFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGVVPSKEITEIIH 239
Query: 291 VCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAEVDK 348
+C++G DL K ++ ++ + + A +LSQL DV +E +++++++ + +A+ D
Sbjct: 240 LCQNGSVNDLYLKAMSLVVEQNFSADSILSQLRDVYIEDCVNLTNQERCLFLQLIAQSDA 299
Query: 349 CLVDGAD 355
L+D D
Sbjct: 300 TLIDKTD 306
>gi|407043555|gb|EKE42013.1| replication factor C subunit 4, putative [Entamoeba nuttalli P19]
Length = 329
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 206/307 (67%), Gaps = 9/307 (2%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QEEV+++L ++L + P++LF+GPPG+GKTT+ LA+AH+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELF-QG 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K RVLELNAS+ RGI +VRT +K +A V P YK+IILDE+D++T D
Sbjct: 65 YFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYD-----GIPDYKLIILDESDALTPD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME ++K TRF ICNYISRI+ P++SRC KFRF L +E++S+R+ IC +E
Sbjct: 120 AQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G ++ EA+ +S +S+GDLR I LQ ++ S+T +D+ +V+GV+P + + +
Sbjct: 180 GFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGVVPSKEITEIIH 239
Query: 291 VCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAEVDK 348
+C++G DL K ++ ++ + + A +LSQL DV +E +++++++ + +A+ D
Sbjct: 240 LCQNGSVNDLYLKAMSLVVEQNFSADSILSQLRDVYIEDCVNLTNQERCLFLQLIAQSDA 299
Query: 349 CLVDGAD 355
L+D D
Sbjct: 300 TLIDKTD 306
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 136/313 (43%), Positives = 200/313 (63%), Gaps = 12/313 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+++ D+ QE +++ L + ++T + PH+LF GPPGTGKTT+ALA+A +LFG
Sbjct: 13 KPWVEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELFG 72
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++T
Sbjct: 73 -ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ ALRRTME +S RF NY SRIIEP+ SRCA FRF+PLS+E ++ R+ +I
Sbjct: 124 QDAQQALRRTMEMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSDEDVAKRLKYIAE 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
+EGL L E L + +++GDLRRAI LQ AA L IT +++ +V+ PE + +
Sbjct: 184 QEGLELTEEGLQAILYVAEGDLRRAINVLQAAAAL-DKKITDENVFTVASRARPEDIREM 242
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ G+F A +++ I + +G +L Q+ V IS+ ++ ++ + E +
Sbjct: 243 MLLALEGNFLKAREKLREILLKQGLSGEDVLIQMHREVFNL-PISEPKKVQLADKIGEYN 301
Query: 348 KCLVDGADEYLQL 360
LV+GA+E +QL
Sbjct: 302 FRLVEGANEMIQL 314
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 201/320 (62%), Gaps = 11/320 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GP 109
WVEKYRPK + DV Q++++R L +E + PH+LF GP GTGKTTTALA+A+ L+
Sbjct: 6 WVEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLYKSE 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL + LELNASD+RGI+ +RTKIK FA A + P+KII LDEAD++T
Sbjct: 66 ELVAANYLELNASDERGIDTIRTKIKDFAKTA--------PFGEVPFKIIHLDEADNLTA 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME YS TRF F CNY S+IIEP+ SRCA FRF P+ EE + +R++ I
Sbjct: 118 DAQQALRRIMEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAIKNRLIMIAER 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EGL + +S + +++GDLR+AI LQ A+ + S++ SK + V+G+ PE V +
Sbjct: 178 EGLKYTEDGISAIIYVAEGDLRKAINLLQTASAM-ASTVDSKVVYRVAGLAHPEEVRAMI 236
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G F A + + N+ I G A ++ QL ++ ++ +SD+++A + L+EVD
Sbjct: 237 NSALKGKFLSAREALRNLMINYGMSAQDVIRQLNREIMASKSLSDKEKAMLMIFLSEVDF 296
Query: 349 CLVDGADEYLQLLDVASNVI 368
+ +GA +QL + + ++
Sbjct: 297 RVTEGAHGDVQLAAMLAKLV 316
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 201/312 (64%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+++ D+ Q+E+VR L + ++T N PH+LF GPPG GKT +++I ++FG E
Sbjct: 8 WIEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFG-E 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
+++ +ELNASD+RGI+++R K+K FA +A +G +K+I LDEAD++T
Sbjct: 67 TWRNNFIELNASDERGIDIIRHKVKDFARMAPLGEAD---------FKVIFLDEADALTN 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ+ALRRTME YS TRF CNY S+IIEP+ SRCA +RFKPLS E ++ R+ I +E
Sbjct: 118 DAQSALRRTMERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAVTKRIKFIASE 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EGL + LS + ++ GD+R+AI LQ AA L G + + + ++ PE ++
Sbjct: 178 EGLRVSDGGLSAIEYVAGGDMRKAINALQAAA-LLGDEVDEETIYQITSTAKPEEIKSFI 236
Query: 290 AVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
SGDF A +++ ++++G ++ Q+ +++ +DI+D + ++ + E+D
Sbjct: 237 KTAISGDFVGARAILDDLLLSKGLSGQDVVIQIHRAMLDLDDIADRDRVKLIDRIGEIDF 296
Query: 349 CLVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 297 RMTEGANERIQL 308
>gi|345329292|ref|XP_001513440.2| PREDICTED: replication factor C subunit 4-like [Ornithorhynchus
anatinus]
Length = 287
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 165/221 (74%), Gaps = 1/221 (0%)
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KF
Sbjct: 61 GKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKF 120
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-I 268
RFKPLS+++ R+L I +E + + +E ++ L +S+GDLR+AIT+LQ A RL G +
Sbjct: 121 RFKPLSDKIQHQRLLDISEKEKVKISSEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEV 180
Query: 269 TSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET 328
T K + ++GV+P E ++G+F+ C+SG F+ V ++I EG+ A+ L++QL DVVVE
Sbjct: 181 TEKVITEIAGVVPAETIDGIFSACQSGSFEKLEAVVKDLINEGHAATQLVNQLHDVVVEK 240
Query: 329 EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
+ +SD+Q++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 241 DHLSDKQKSVITEKLAEVDKCLADGADEHLQLISLCATVMQ 281
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 197/312 (63%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QE++VR L +E N PHMLF GPPGTGKTT ALA+AH L+G E
Sbjct: 9 WAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+RTK+K FA R P P+K++ILDEAD+MT D
Sbjct: 68 KYRQYILELNASDERGIDVIRTKVKEFA--------RSRTPPTVPFKLVILDEADNMTAD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS TRF + N+ S+IIEP+ SRC FRF+PL ++ + R+ +IC +E
Sbjct: 120 AQQALRRLMEMYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + +AL + +IS+GD+R+AI LQ AA L +T + G + P ++ +
Sbjct: 180 GVQCEEDALEEIYNISEGDMRKAINILQAAAAL--GKVTKDAVYKAIGYVHPSKIKEILE 237
Query: 291 VCRSGDFDLANKEVNNIIAEGYPASLLLSQLF--DVVVETEDISDEQQARICKCLAEVDK 348
+GDF + K + +++ E + L + ++F +++ + ++ +E + + EV
Sbjct: 238 YALNGDFTKSAKLLRDVMIEYGLSGLDVLKMFQRELMGGSFELPEELKVLLADYAGEVQF 297
Query: 349 CLVDGADEYLQL 360
L +GAD+ +QL
Sbjct: 298 RLAEGADDEVQL 309
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 197/313 (62%), Gaps = 12/313 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+++ D+ QE +V+ L + +T + PH+LF GPPGTGKT+ ALA+A +LFG
Sbjct: 16 KPWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKTSAALALARELFG 75
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++T
Sbjct: 76 -ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADALT 126
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL++E ++ R+ +I
Sbjct: 127 QDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRIRYIAE 186
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
+EGL L E L + +++GDLRRAI LQ AA L IT +++ V+ PE V +
Sbjct: 187 QEGLELTEEGLQAILYVAEGDLRRAINVLQAAAAL-DKKITDENVFLVASRARPEDVREM 245
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ G+F A ++ +I + +G +L Q+ V I ++++ + + E +
Sbjct: 246 MTLALEGNFLKARDKLRDILLKQGLSGEDVLIQMHKEVFNL-PIPEDKKVALADKIGEYN 304
Query: 348 KCLVDGADEYLQL 360
LV+GA+E +QL
Sbjct: 305 FRLVEGANEMIQL 317
>gi|291244804|ref|XP_002742285.1| PREDICTED: replication factor C 4-like [Saccoglossus kowalevskii]
Length = 288
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 119/188 (63%), Positives = 147/188 (78%), Gaps = 1/188 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL ++E ++ P++LFYGPPGTGKT+T LA+A +LFG
Sbjct: 36 PWVEKYRPKSVDEVAFQDEVVAVLKKSIEGSDLPNLLFYGPPGTGKTSTILAVARELFGN 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E++++RVLELNASD+RGINVVR K+K FA ++ S R G PCPPYKIIILDEADSMT
Sbjct: 96 EMFRTRVLELNASDERGINVVREKVKRFAQLS-ASATRSDGKPCPPYKIIILDEADSMTG 154
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +K TRF ICNY+SRII PL SRCAKFRFKPL+ ++ +R+ IC +
Sbjct: 155 AAQAALRRTMEKETKTTRFCLICNYVSRIIGPLTSRCAKFRFKPLATSILLTRLKGICEQ 214
Query: 230 EGLNLDAE 237
E +N E
Sbjct: 215 ENVNCSEE 222
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 39/53 (73%)
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373
+ D++V+ DIS +Q++ IC+ L VDK L DGADEYLQ++D+ + +++ C+
Sbjct: 234 IHDIIVQKADISGKQKSIICERLGMVDKRLSDGADEYLQMMDLCTVIMQQFCH 286
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 140/312 (44%), Positives = 190/312 (60%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + D+ Q+ VV L ++ N PH+LF GPPGTGKTT A A+AH LFG E
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGINV+R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 68 NYRQYMLELNASDERGINVIREKVKEFA--------RSRTPPEIPFKIVLLDEADNMTSD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS VTRF I NY S+II+P+ SRCA FRF+PLS++ + R+ +I E
Sbjct: 120 AQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G++ + EAL + IS+GD+R+AI LQ A+ L +T + V G+ P V + A
Sbjct: 180 GVDYEEEALDAIYEISEGDMRKAINVLQAASYL--GKVTVDAVYRVVGMAKPREVREMLA 237
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
GDF A + I+ E G + Q+ + TE + +E + L EV
Sbjct: 238 TALKGDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHY 297
Query: 349 CLVDGADEYLQL 360
LV+G+D+ +QL
Sbjct: 298 RLVEGSDDDIQL 309
>gi|341896367|gb|EGT52302.1| hypothetical protein CAEBREN_14732 [Caenorhabditis brenneri]
Length = 353
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 193/324 (59%), Gaps = 28/324 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+AHQ+EVV +L L+ + PH+LFYGPPGTGKT+TALA HQLF
Sbjct: 36 WTEKYRPKTLDDIAHQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSTALAFCHQLFPKS 95
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ RVL+LNASD+RGI+VVR K++ F+ ++GSG G KIIILDE D+MT +
Sbjct: 96 IFHDRVLDLNASDERGISVVRQKVQAFSKTSLGSG---GKEDVLKLKIIILDEVDAMTRE 152
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+A+RR +E YSK TRF ICNY+SR+I P+ SRCAKFRFK L EV R+ IC+ E
Sbjct: 153 AQSAMRRVIEDYSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRTICDAE 212
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS------------SITSKDLISVSG 278
G + E L + ++GDLRRA+ LQ + + S S S+ + +V
Sbjct: 213 GAPMTDEELKQVMEYAEGDLRRAVCTLQSLSPILKSDNQDARNCYLRGSSDSQLISTVCE 272
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
IP V+ + A+ ++ I + + +LF +++ I+DE A
Sbjct: 273 TIPVSDVKEIIAMTKN-------------ITKSCTGVAFIRRLFQKMLDDGIINDENIAV 319
Query: 339 ICKCLAEVDKCLVDGADEYLQLLD 362
+ K +A +K ++DG D LLD
Sbjct: 320 MGKLVATCEKRILDGCDLENNLLD 343
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 192/311 (61%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV E +V L + ++ + HMLF GP GTGKTT+A AIA +L+G +
Sbjct: 13 WIEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYGDD 72
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK+FA R + Y+II LDEAD++T D
Sbjct: 73 -WQEHFLELNASDERGIDVVRDRIKSFA---------RTSFGGVDYRIIFLDEADALTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL +E + + + HI +EE
Sbjct: 123 AQSALRRTMEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDEAVEAEIRHIADEE 182
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ L + + L + GD+R+AI LQ AA + G + + + +++ PEV++G+
Sbjct: 183 GIELTDDGVDALVYAAGGDMRKAINGLQ-AASVSGDVVDEEAVFAITSTARPEVIQGMVQ 241
Query: 291 VCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A +++++I EG ++ QL + E D+ DEQ RI + E D
Sbjct: 242 DAIDGDFTAARSQLDDLITDEGIAGGDIIDQLHRSIWEF-DVPDEQAVRILDRVGETDYR 300
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 301 ITEGANERIQL 311
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 190/310 (61%), Gaps = 10/310 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK ++ EE+ L ++ N PH+LFYGPPGTGKTTTAL +A +L+G E
Sbjct: 8 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG-E 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGINV+R ++K FA A G P+K+++LDEAD+MT D
Sbjct: 67 RWRENTLELNASDERGINVIRERVKEFARTAPAGG--------APFKLVVLDEADNMTSD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF + NY+SRII+P+ SRCA FRF P+ + +M+ R+ +I ++E
Sbjct: 119 AQQALRRIMEMYAATTRFVLLANYVSRIIDPILSRCAVFRFPPMPKPLMAQRLQYIASQE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ L + + + ISQGD+RRAI LQ AA G S P E++E +F
Sbjct: 179 RIKLTEDGIDAIYEISQGDMRRAINLLQMAAASAGVVDKESVAAVASAAKPSEILE-IFN 237
Query: 291 VCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCL 350
+ SGD + A + + +++ A + + + + I +E +A + + LA+VD L
Sbjct: 238 LAFSGDVEKARERLRDLMYMRGIAGIDILKALQRELPRLQIDEETKAAVAELLADVDLRL 297
Query: 351 VDGADEYLQL 360
V+G+DE LQL
Sbjct: 298 VEGSDEELQL 307
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 192/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVTAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + SR+ I N+E
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIANQE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ +D EAL + +S+GD+RRAI LQ AA L +T + V G+ P + +
Sbjct: 184 KVEVDEEALEAIHDLSEGDMRRAINILQAAAAL--GRVTVDSVYKVVGLAHPREIRQMIQ 241
Query: 291 VCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ +G+F A +++ + I G ++ Q+ + T+ I DE + I E+
Sbjct: 242 LALAGNFTDAREKLRKLMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQF 301
Query: 349 CLVDGADEYLQL 360
LV+GAD+ +QL
Sbjct: 302 RLVEGADDEIQL 313
>gi|440301872|gb|ELP94258.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 337
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 205/313 (65%), Gaps = 9/313 (2%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + W EKYRPK++ +V QEEV+++L ++L T+ P++LF+GPPG+GKTT+ LA++
Sbjct: 12 MSETNAWSEKYRPKKLDEVKGQEEVIKLLKSSL-TSGLPNLLFFGPPGSGKTTSILALSR 70
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+LFG +K RVLELNAS++RGI+++RT +K +A V + G P YK+IILDE+
Sbjct: 71 ELFG-NCFKDRVLELNASNERGIDMIRTTLKNYAMQDVS---HQDG--IPDYKLIILDES 124
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRR ME +++ TRF ICNYISRI+ P++SRC KFRF L +E + +
Sbjct: 125 DALTPDAQTALRRMMEDFTRNTRFCLICNYISRILPPISSRCIKFRFNALPQETVFEHLT 184
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
IC +E ++ EA+ + +S+GD+R AI LQ ++ S+T +D+ +V+GV+P
Sbjct: 185 SICEKEKFDVTPEAIKAVGKLSEGDMRYAIGLLQKLSQGVRHSVTPQDISNVAGVVPNLE 244
Query: 285 VEGLFAVCRSGD-FDLANKEVNNIIAEGYPASLLLSQLFDVVVE-TEDISDEQQARICKC 342
+ + +C+ FD+ K ++ ++ E Y A +LSQ+ D+ + T +++ Q+
Sbjct: 245 ISQIILICKEKTVFDIYLKVLHLVVEENYAADSILSQIRDIFTQDTNGLTETQRCNFLLE 304
Query: 343 LAEVDKCLVDGAD 355
+A+ D L+D AD
Sbjct: 305 IADTDAALIDRAD 317
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 196/313 (62%), Gaps = 12/313 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP++++D+ QE +V+ L + ++T + PH+LF GPPG GKTT ALA+A +LFG
Sbjct: 13 KPWVEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 72
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++T
Sbjct: 73 -EHWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL++ ++ R+ +I
Sbjct: 124 QDAQQALRRTMEMFSTNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDNDIAKRIKYIAE 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EGL L + L L +++GDLRRAI LQ AA L IT +++ V+ PE V +
Sbjct: 184 NEGLELTEDGLQALLYVAEGDLRRAINVLQAAAAL-DRKITDENVFLVASRARPEDVREM 242
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ G+F A +++ I + +G +L Q+ V I ++++ + + E +
Sbjct: 243 MNLALEGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNL-TIPEDRKVALADKIGEYN 301
Query: 348 KCLVDGADEYLQL 360
LV+GA+E +QL
Sbjct: 302 FRLVEGANEMIQL 314
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+++ D+ QE +V+ L + ++T + PH+LF GPPG GKTT ALA+A +LFG
Sbjct: 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 72
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++T
Sbjct: 73 -ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL +E ++ R+ +I
Sbjct: 124 QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EGL L E L + I++GD+RRAI LQ AA L IT +++ V+ PE + +
Sbjct: 184 NEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVASRARPEDIREM 242
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ G+F A +++ I + +G +L Q+ V I + ++ + + E +
Sbjct: 243 MLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-PIEEPKKVLLADKIGEYN 301
Query: 348 KCLVDGADEYLQL 360
LV+GA+E +QL
Sbjct: 302 FRLVEGANEIIQL 314
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 191/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + SR+ I +E
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ +D EAL + +S+GD+RRAI LQ AA L +T + V G+ P + +
Sbjct: 184 KVEIDEEALEAIHDLSEGDMRRAINILQAAAAL--GKVTVDSVYKVVGLAHPREIRQMIQ 241
Query: 291 VCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ +G+F+ A +++ + I G ++ Q+ + T+ I DE + I E+
Sbjct: 242 LALAGNFNDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQF 301
Query: 349 CLVDGADEYLQL 360
LV+GAD+ +QL
Sbjct: 302 RLVEGADDEIQL 313
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 197/311 (63%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ DV Q+E + L + ++T N PH+LF GPPG GKT TA+AIAH+LFG +
Sbjct: 6 WIEKYRPMKLDDVVGQKEAIERLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHELFG-D 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ ELNASD+RGI+VVRTKIK FA + G +KII LDEAD++T D
Sbjct: 65 SWNENFTELNASDERGIDVVRTKIKNFAKTSPIGG--------ADFKIIFLDEADALTSD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF+PL++E + R+ ++ + E
Sbjct: 117 AQSALRRTMERYTGNCRFILSCNYSSKIIEPIQSRCAVYRFRPLADEPVKERIRYVADAE 176
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ L +A+ + ++QGD+R+A+ LQ AA +F +I + + ++ P+ ++ L
Sbjct: 177 GIKLADDAIDAIGYVAQGDMRKALNALQAAA-MFDETIQKEMIYKITATAHPDEIKTLIN 235
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ G+F A ++++ ++ E G ++ Q++ + DI D++ + + E+D
Sbjct: 236 IALDGNFSAAREKLDTLMLEQGLSGEDVVGQIYRAMFGL-DIPDKKLVELIDVIGEIDFR 294
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 295 ITEGANEKIQL 305
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 197/319 (61%), Gaps = 16/319 (5%)
Query: 47 SSQP---WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
S QP W EKYRP+ + +V +Q+EVV L +E N PH+LF GPPGTGKTT A +A
Sbjct: 9 SEQPLLLWAEKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLA 68
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
H L+G Y+ +LELNASD+RGI+V+R+K+K FA V +G+ P+KII+LDE
Sbjct: 69 HDLYGDN-YRQYMLELNASDERGIDVIRSKVKEFARTRV-AGE-------VPFKIILLDE 119
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT DAQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PLS E + R+
Sbjct: 120 ADNMTADAQQALRRLMELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVERL 179
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPE 283
+I +E + + EAL T+ +S+GD+R+AI LQ A+ L +T + + V G+ P+
Sbjct: 180 KYIAEKENVKYNTEALETIHELSEGDMRKAINILQAASAL--GEVTVEAVYKVVGLAHPK 237
Query: 284 VVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQARICK 341
V + + SG+F A ++ ++ G ++ Q+ + ++ +SDE + I
Sbjct: 238 EVRQMLQLALSGNFTEARSKLRELMLNYGLSGLDIIRQIHREIFSSDIKLSDEARIMIAD 297
Query: 342 CLAEVDKCLVDGADEYLQL 360
E+ LV+GAD+ +QL
Sbjct: 298 YAGEIQFRLVEGADDEIQL 316
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 193/319 (60%), Gaps = 17/319 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI+VVRTKIK FA A G +KII LDEAD++T D
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMGG--------AEFKIIFLDEADALTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY SRIIEP+ SRCA FRF+ LS+E + R+ +I ++
Sbjct: 123 AQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQ 182
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLF 289
L++ + L +SQGD+R+A+ LQ AA + SI+ + + PE + L
Sbjct: 183 VLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLI 242
Query: 290 AVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETED-------ISDEQQARICK 341
G+F +A KE+N ++ EG ++ Q++ + E ++ +S+++ +
Sbjct: 243 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVD 302
Query: 342 CLAEVDKCLVDGADEYLQL 360
+ E+D L +GA E +QL
Sbjct: 303 IIGEIDFRLTEGATEKIQL 321
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 196/313 (62%), Gaps = 16/313 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI--SVSGVIPPEVVEG 287
EG+ + +A+ + +S+GD+R+AI LQ AA + I ++++ + + + P ++VE
Sbjct: 176 EGVEVKEDAIDLIYELSEGDMRKAINILQVAAA--TNKIVDRNVVAAAAAAIRPTDIVE- 232
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
LF + SGD+ A +++ ++ A + + F + + DE +A + + LA+VD
Sbjct: 233 LFNLALSGDYLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVD 292
Query: 348 KCLVDGADEYLQL 360
L GADE +QL
Sbjct: 293 YRLTQGADEEIQL 305
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 132/313 (42%), Positives = 193/313 (61%), Gaps = 15/313 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK ++++ +QEE+V L +E N PH+LF GPPGTGKTT ALA+AH L+G E
Sbjct: 5 WAEKYRPKTLREIVNQEEIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLYGDE 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP-PYKIIILDEADSMTE 169
++ +LELNASD+RGI V+R+K+K FA R P P+KI+ILDEAD+MT
Sbjct: 65 -WRRYLLELNASDERGIAVIRSKVKEFA---------RSKLPGDIPFKIVILDEADNMTA 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y + TRF I NY S+II+P+ SRCA FRF PL E ++SR+ IC +
Sbjct: 115 DAQQALRRIMEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRWICEQ 174
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + D + L + +S GD+R+AI LQ A+ L +T ++ V G+ P+ V +
Sbjct: 175 EKVKCDEDGLDVIYELSGGDMRKAINILQSASAL--GEVTVSNVYKVVGLAHPKEVREII 232
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVD 347
+ SG F A +++N+ I G ++ Q+ + + I ++ + + + E+
Sbjct: 233 TLALSGKFIEARDKLHNLMIVYGLSGVDIIKQMHREIFSADLKIPEDIRVILADYIGEIQ 292
Query: 348 KCLVDGADEYLQL 360
+V+GAD+ +QL
Sbjct: 293 FRIVEGADDEIQL 305
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 197/318 (61%), Gaps = 13/318 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L+ W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT ALA+ H
Sbjct: 3 LEEEILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVH 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
L+G Y+ LELNASD+RGI+V+R K+K FA G P+K+++LDEA
Sbjct: 63 DLYGDN-YRQYFLELNASDERGIDVIRNKVKEFARTVAGGN--------VPFKVVLLDEA 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT DAQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+
Sbjct: 114 DNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLA 173
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
+I E + D +AL T+ I+QGD+R+AI LQ A+ ++G +T + + V G+ P+
Sbjct: 174 YIAKNEKVEYDQKALETIYDITQGDMRKAINILQ-ASSVYG-KVTVEAVYKVLGLAQPKE 231
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQARICKC 342
+ + + G+F A +++ ++ G ++ Q+ V E +I D+ + +
Sbjct: 232 IREMIMLALQGNFLKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDY 291
Query: 343 LAEVDKCLVDGADEYLQL 360
+ EV+ +++GAD+ +QL
Sbjct: 292 IGEVEYRIMEGADDEIQL 309
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 133/313 (42%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+++ D+ Q+ +V+ L + ++T + PH+LF GPPG GKTT AL + +LFG
Sbjct: 13 KPWVEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRELFG 72
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++T
Sbjct: 73 -EHWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ ALRR ME +S RF CNY S+IIEP+ SRCA FRF+PL +E ++ R+ I
Sbjct: 124 QDAQQALRRMMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDIAKRIRFIAE 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EGL L E L L I++GDLRRAI LQ AA L + IT +++ V+ PE + +
Sbjct: 184 NEGLELTEEGLQALLYIAEGDLRRAINVLQAAAAL-DTKITDENVFLVASRARPEDIREM 242
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ G+F A +++ I + +G +L Q+ V IS+ ++ + + E +
Sbjct: 243 MLMALEGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNL-PISEPKKVALADKIGEYN 301
Query: 348 KCLVDGADEYLQL 360
LV+GA+E +QL
Sbjct: 302 FRLVEGANEMIQL 314
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 193/319 (60%), Gaps = 17/319 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA Q+E + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T D
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPIGG--------APFKIIFLDEADALTAD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY S+IIEP+ SRCA +RF+ LS+E + R+ +I ++
Sbjct: 127 AQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQ 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGLF 289
GL++ L ++QGD+R+A+ LQ AA + SI+ + + + PE ++ L
Sbjct: 187 GLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLI 246
Query: 290 AVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETED-------ISDEQQARICK 341
G+F +A KE+N ++ EG ++ Q++ VV E ++ +++ +
Sbjct: 247 ETALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVD 306
Query: 342 CLAEVDKCLVDGADEYLQL 360
+ E D L +GA E +QL
Sbjct: 307 VIGETDFRLTEGASEKIQL 325
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 196/311 (63%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP +++DV Q + + L + ++T N PH+LF GPPG GKT TA++IA +LFG +
Sbjct: 6 WIEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFGDD 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ ELNASD+RGI+VVRTKIK FA + G +KII LDEAD++T D
Sbjct: 66 -WRENFTELNASDERGIDVVRTKIKNFAKTSPIGG--------ADFKIIFLDEADALTPD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF+PLS++ + R HI +E
Sbjct: 117 AQSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEKE 176
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
GL++ + + + +++GD+R+AI +Q AA +F +SI + + ++ PE ++ L
Sbjct: 177 GLDIADDGIEAIKYVAEGDMRKAINAVQ-AASMFDTSIHADSIYRITATAHPEEIKALLE 235
Query: 291 VCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F + K+++++ ++ G ++ Q++ + + DI + I L E+D
Sbjct: 236 SALGGNFISSRKKLDDLMVSRGLSGEDVVGQVYRSLFDL-DIPARKLVSIVDVLGEIDFR 294
Query: 350 LVDGADEYLQL 360
+ +GADE +QL
Sbjct: 295 ITEGADERIQL 305
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 189/311 (60%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G +
Sbjct: 8 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 67 AWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y+ TRF + NY+SRII+P+ SRCA FRF P+ +E+M+ R+ +I +
Sbjct: 118 DAQQALRRIMEMYANTTRFILLANYVSRIIDPIISRCAVFRFPPMPKELMAKRLAYIAKQ 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + + + + ISQGD+RRAI LQ AA S S P E+++ +F
Sbjct: 178 EGITVTEDGIDAIYEISQGDMRRAINLLQMAAAASRSVDKESVAAVASAARPSEILD-VF 236
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
SGD + A +++ +++ A + + + + DE + + + L++VD
Sbjct: 237 NTALSGDVEKAREKLRDLMYMKGIAGVDFLRALQRELPRIQLDDETKVAVAELLSDVDYR 296
Query: 350 LVDGADEYLQL 360
L +G+DE LQL
Sbjct: 297 LAEGSDEELQL 307
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/307 (42%), Positives = 185/307 (60%), Gaps = 12/307 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ HI
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L +A+ + +S+GD+R+AI LQ AA + + + S + +I P V LF
Sbjct: 176 EGIELRDDAIDLIYEVSEGDMRKAINLLQVAAAT-SKVVDANAVASATTMIRPADVVELF 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ +GD A +++ ++ A + + F + + DE +A I + LAEVD
Sbjct: 235 NLAFNGDVTKAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLAEVDYR 294
Query: 350 LVDGADE 356
L G+DE
Sbjct: 295 LTQGSDE 301
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 194/312 (62%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 7 WAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDS 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA V S P+K+I+LDEAD+MT D
Sbjct: 67 -YEQFFLELNASDERGIDVIRNKVKEFARTMVSS--------SVPFKVILLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+II+P+ SR A FRF PL +E + SR+ I EE
Sbjct: 118 AQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEE 177
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ D +AL T+ ++ GD+R+AI LQ AA +G +T + + V G+ P+ V +
Sbjct: 178 KVEYDEKALETIYDVTMGDMRKAINTLQ-AASAYG-KVTIETVFKVLGLAQPKEVRDMLK 235
Query: 291 VCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ SG F A +++ + ++ G ++ QL + E I +E + + + EV+
Sbjct: 236 LALSGKFMEAREKLRSLLVTYGLSGEDIVKQLHRELTSNELQIPEELRVLLMDYIGEVEF 295
Query: 349 CLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 296 RIIEGADDEIQL 307
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 191/314 (60%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRPK + ++ Q+E+V+ L +E + PH+LF GPPG GKTT AL +A LFG
Sbjct: 3 KPWVEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGI+V+RTK+K FA R P+KII LDE+D++T
Sbjct: 63 -ENWRENFLELNASDERGIDVIRTKVKDFA--------RTKPIGDVPFKIIFLDESDALT 113
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQNALRRTME YS V RF CNY S+II P+ SRCA FRF PL +E ++ ++ I
Sbjct: 114 PDAQNALRRTMEKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIAKKLKEIAE 173
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI-SVSGVIPPEVVEG 287
+EGL L L + +S+GD+R+AI LQ AA L S + +++ VS PE V+
Sbjct: 174 KEGLKLTESGLEAIIYVSEGDMRKAINVLQTAAAL--SEVIDDEIVYKVSSRARPEEVKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + G F A + ++ E G +L+Q+F + DI + ++ + + E
Sbjct: 232 MMELALEGKFVEARDLLYKLMVEWGMSGEDILNQMFR-EINNLDIDERKKVELADAIGET 290
Query: 347 DKCLVDGADEYLQL 360
D +V+GA+E +QL
Sbjct: 291 DFRIVEGANERIQL 304
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/311 (42%), Positives = 188/311 (60%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L +A++ + +S+GD+R+AI LQ AA + + V P +++E LF
Sbjct: 176 EGVELREDAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIE-LF 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ SGDF A +++ ++ A + F + I D+ +A I + LA+VD
Sbjct: 235 NLAISGDFVKAREKLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYR 294
Query: 350 LVDGADEYLQL 360
L GADE +QL
Sbjct: 295 LTQGADEEIQL 305
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 190/324 (58%), Gaps = 10/324 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK ++ EE+ L ++ N PH+LFYGPPGTGKTTTAL +A +L+G E
Sbjct: 6 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGINV+R ++K FA A G P+K+++LDEAD+MT D
Sbjct: 65 RWRENTLELNASDERGINVIRERVKEFARTAPAGG--------APFKLVVLDEADNMTSD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF + NY+S IIEP+ SRCA FRF PL ++ + +R+ +I +E
Sbjct: 117 AQQALRRIMEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDAVVARLRYIAEQE 176
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
GL + +AL + +QGD+RRAIT LQ A+ I + + G + P ++ L A
Sbjct: 177 GLKVTQDALEAIFDFTQGDMRRAITALQIASST-TREIDEEAIARALGYVSPSILRRLIA 235
Query: 291 VCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCL 350
SGDF A ++ I+A+G L L + V D+ + + + + +
Sbjct: 236 EAISGDFSKAISQIYGIVADGGVGELELIRQIHREVLRLDVPEHLKPDLAYEVERAHYAV 295
Query: 351 VDGADEYLQLLDVASNVIRAVCNM 374
+ GA+ +Q+ + + V R + ++
Sbjct: 296 LRGANGLVQIYGILARVRRIINSI 319
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 190/312 (60%), Gaps = 12/312 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI V+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGIGVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L +A+ + IS+GD+R+AI LQ AA + + + + V P +V+E LF
Sbjct: 176 EGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRPSDVLE-LF 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ GD A ++ ++ A + L ++F + + D+ +A + + L+EVD
Sbjct: 235 NLAMGGDLAKARDKLRELMYIKGVAGVDLIRVFQRELIRMQLDDDVKAEVAELLSEVDYR 294
Query: 350 LVDGADEYLQLL 361
L GADE +QL+
Sbjct: 295 LTQGADEEIQLM 306
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 190/325 (58%), Gaps = 13/325 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA Q++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIARQVYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+E ++++ I EG+ + E + L + GD+RRAI LQ AA G + + + +
Sbjct: 173 DEAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYA 231
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDE 334
++ PE +E + GDF A ++ ++ E G ++ QL V E D+S+
Sbjct: 232 ITATARPEEIESMVTNALEGDFSRARATLDTLLTETGMAGGDVIDQLHRSVWEF-DLSER 290
Query: 335 QQARICKCLAEVDKCLVDGADEYLQ 359
+ + + + E D + +GA+E +Q
Sbjct: 291 EAVALMERIGEADYRIAEGANEQVQ 315
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/307 (42%), Positives = 187/307 (60%), Gaps = 12/307 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRVFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ HI
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRGLMAERLRHIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L +A+ + +S+GD+R+AI LQ AA + + + + S + +I P V LF
Sbjct: 176 EGIELRDDAIDLIYEVSEGDMRKAINLLQVAAAT-SNVVDANAVASATTMIRPADVIELF 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ +GD A +++ ++ A + + F + + DE +A I + LA+VD
Sbjct: 235 NLALNGDVAKAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLADVDYR 294
Query: 350 LVDGADE 356
L G+DE
Sbjct: 295 LTQGSDE 301
>gi|449017476|dbj|BAM80878.1| replication factor C subunit 4 [Cyanidioschyzon merolae strain 10D]
Length = 359
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 149/352 (42%), Positives = 207/352 (58%), Gaps = 39/352 (11%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL----------ETANCPHMLFYGPPGTGK 95
++QPWVEKYRP+++ DV Q E +R L L + A+ PH+LFYGPPGTGK
Sbjct: 7 HATQPWVEKYRPRRLDDVTQQHETIRALKQLLYGSGGSSLTEKVASLPHLLFYGPPGTGK 66
Query: 96 TTTALAIAHQLF----GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
TTTALA+ +LF E ++RVLELNASD+RGI VVR KIK FA ++ +
Sbjct: 67 TTTALALCRELFQNITNRETLQNRVLELNASDERGIRVVREKIKRFAQSSI---EESVDA 123
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
P +KI+ILDEAD++T DAQ ALRRT+E +S+ TRF ICNY+SR+I PLASRCAKFRF
Sbjct: 124 QVPGFKIVILDEADAITADAQTALRRTIEVHSRTTRFVLICNYLSRVIPPLASRCAKFRF 183
Query: 212 KPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
K L + + +R+ HI EG+ L EA L+ + GDLRRA+ LQ A S+ S
Sbjct: 184 KALEDGAVIARLEHIARTEGMGPLPPEASRLLAKAAAGDLRRAVNLLQSCADWARSADGS 243
Query: 271 KDLI------SVSGVIPPEVVEGLFAVCRSGDFDLANKEVN---NIIAEGYPASLLLSQL 321
+ ++ + ++P VVE + +C S N+ V ++ GYP LL Q
Sbjct: 244 QRVLEPEMVSEAACMVPASVVERFYDICVS-----RNEPVTACFEVLRGGYPVDELLRQT 298
Query: 322 FDVVVETE-------DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASN 366
++++ ++D Q++ I +A +K L DGA E +QLL +N
Sbjct: 299 LELLLLDSGTPPAQVQMNDLQRSAIALHMACAEKYLCDGATEAVQLLAFVAN 350
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 191/319 (59%), Gaps = 17/319 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T D
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMGG--------APFKIIFLDEADALTSD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY S+IIEP+ SRCA +RF+ LS++ + R+ +I E+
Sbjct: 127 AQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQ 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGLF 289
L++ L ++QGD+R+A+ LQ AA + I+ + + + PE ++ L
Sbjct: 187 DLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLI 246
Query: 290 AVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETED-------ISDEQQARICK 341
G+F +A KE+N ++ EG ++ Q++ VV E ++ +S+ +
Sbjct: 247 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVD 306
Query: 342 CLAEVDKCLVDGADEYLQL 360
+ E D L +GA E +QL
Sbjct: 307 IIGETDFRLTEGASEKIQL 325
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 196/313 (62%), Gaps = 15/313 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q ++V L + ++ N PH+LF GPPGTGKTT+ALA+ H L+G E
Sbjct: 7 WAEKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYG-E 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASD+RGI+V+R K+K FA V GS P+K ++LDEAD+MT
Sbjct: 66 NYEQYLLELNASDERGIDVIRNKVKEFARTVTPGS---------VPFKTVLLDEADNMTA 116
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRRTME Y++ TRF CNY+S+II+P+ SR A FRF PL +E + SR+ I +
Sbjct: 117 DAQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIMKQ 176
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ D +AL + ++ GD+R+AI LQ AA +G +T + + V G+ P+ V +
Sbjct: 177 EGVQYDPKALDVIYDVTNGDMRKAINVLQ-AASAYG-KVTQEAVFKVLGLAQPKEVRDMV 234
Query: 290 AVCRSGDF-DLANKEVNNIIAEGYPASLLLSQLF-DVVVETEDISDEQQARICKCLAEVD 347
+ G F D +K ++ II G ++ Q+ D+ I +E + + + EV+
Sbjct: 235 KLALQGRFMDARSKLLSLIINYGLSGEDIVKQVHRDIFSNEYQIPEELRVLLTDYIGEVE 294
Query: 348 KCLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 295 FRIIEGADDEIQL 307
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 188/325 (57%), Gaps = 13/325 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + DV QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EADEQAAATATGREIWIEKYRPQTLDDVHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+E +S V I E + + + L + GD+RRAI LQ AA G + K + +
Sbjct: 173 DEAVSGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAAATT-GDVVDEKAVYA 231
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDE 334
++ PE +E + SGDF A ++ ++ E G ++ QL V E D+S+
Sbjct: 232 ITATARPEEIESMVTDALSGDFARARSTLDTLLTETGMAGGDVIDQLHRSVWEF-DLSER 290
Query: 335 QQARICKCLAEVDKCLVDGADEYLQ 359
+ R+ + + E D + +GA+E +Q
Sbjct: 291 EAVRLMERIGEADYRIAEGANEQVQ 315
>gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae]
gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae]
Length = 335
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/317 (41%), Positives = 183/317 (57%), Gaps = 4/317 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q W EKYRPK + D+AHQEEVV +L L+ + PH+LFYGPPGTGKT+TALA Q
Sbjct: 13 QKVLTWTEKYRPKTLDDIAHQEEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCRQ 72
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LF +++ RVL+LNASD+RGI+VVR KI+ F+ +GS + KIIILDE D
Sbjct: 73 LFPSSIFRDRVLDLNASDERGISVVRQKIQAFSKTTLGSSNKEDVL---RLKIIILDEVD 129
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L EV R+
Sbjct: 130 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRT 189
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
IC+ EG + + L + S+GDLRRA+ LQ A + + S + G ++
Sbjct: 190 ICDAEGTPMSEDELKQVMEYSEGDLRRAVCTLQSLAPILKNGDESARNCYLRGSSDALLI 249
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
L S D + I + + F +++ I+DE + + K +A
Sbjct: 250 SDLCKTLPSADVPQI-ISMTKSITKSCTGVAFIRCCFHQMLDDNLINDENISVMGKLVAV 308
Query: 346 VDKCLVDGADEYLQLLD 362
+K ++DG D LLD
Sbjct: 309 CEKRILDGCDLENNLLD 325
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 192/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + S P+K+++LDEAD+MT D
Sbjct: 70 -YVEYFLELNASDERGIDVIRNKVKEFARTVIPSN--------VPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+++I E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
D +AL T+ I+ GD+R++I LQ AA +G I+ + + V G+ P+ V + +
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQ-AASAYG-KISVEAVFKVLGLAQPKEVREMIS 238
Query: 291 VCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ G F A +++ ++ G ++ Q+ + +E IS+E + + + E +
Sbjct: 239 LALQGKFTQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEF 298
Query: 349 CLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 299 RIIEGADDEIQL 310
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 188/311 (60%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC-PPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A P P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTA----------PIKAPFKLVILDEADNMTS 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ +I
Sbjct: 115 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKR 174
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL + +S+GD+R+AI LQ AA + + + V P +++E LF
Sbjct: 175 EGIEVGEDALDLIYELSEGDMRKAINLLQVAAATNKVVDANAVAAAAAAVKPSDILE-LF 233
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ GD+ A +++ ++ A + + F + + D+ +A I + LA+VD
Sbjct: 234 NLALGGDYLKAREKLRELMYIKGVAGVDFIRAFQRELIRMPLDDDLKAEIAELLADVDYR 293
Query: 350 LVDGADEYLQL 360
L GADE +Q+
Sbjct: 294 LTQGADEEIQM 304
>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
gi|158512813|sp|A2SQT3.1|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
Length = 321
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 203/329 (61%), Gaps = 13/329 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + W+EKYRPK + +V Q++VV L + + T PH+LF G G GKTT A+A+A ++
Sbjct: 4 SPEIWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREM 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEAD 165
FG + + ELNASD+RGI+VVR +IK FA A +G +KI+ LDEAD
Sbjct: 64 FG-DTWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDA---------TFKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T+DAQ ALRRTME Y++ RF CNY S+II+P+ SRCA +RF+PL++E +S +
Sbjct: 114 ALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIAR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ +D A ++ +S GD+R+AI LQGAA + +T++++ +++ P+ +
Sbjct: 174 IAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAA-IVSDHVTAENIYAITSNAKPQEI 232
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
L A C GDF+ A + ++ ++ + G + LL+QL+ + +E + + + L
Sbjct: 233 TDLLARCLEGDFETAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLG 292
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRAVCN 373
E D + +GAD +Q+ + + ++R+ N
Sbjct: 293 EADFRMSEGADADIQMDALLARIVRSGMN 321
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 196/315 (62%), Gaps = 16/315 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP + DV QEE+V+ L + + + N PH+LF GPPG GKT A+++ +LFG E
Sbjct: 51 WIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFGEE 110
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ +ELNASD+RGI+VVR K+K FA +A +G+ + +K+I LDEAD++T
Sbjct: 111 -WRGNFIELNASDERGIDVVRHKVKDFARIAPLGNAE---------FKVIFLDEADALTN 160
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ+ALRRTME YS + RF CNY S+IIEP+ SRCA +RF+ LSEE +S R+ I
Sbjct: 161 DAQSALRRTMERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRSLSEEAVSERMKTIAEA 220
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + E + + +++GD+R+AI LQ AA L S+T + + ++ PE + L
Sbjct: 221 EGVKVTPEGMRAIVYVARGDMRKAINALQ-AASLMEESVTEETIYQITATARPEQIRDLM 279
Query: 290 AVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFD---VVVETEDISDEQQARICKCLAE 345
+G+F A +++ ++ +G ++ Q+ ++++ ++S R+ + E
Sbjct: 280 KTALAGNFTQARSLLDDLLLVQGLSGEDVIIQIHRQTLSLLDSHELSGPTLVRLMDRIGE 339
Query: 346 VDKCLVDGADEYLQL 360
+D + +GA+E +QL
Sbjct: 340 IDFRMTEGANERIQL 354
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 195/314 (62%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E LNL+ + + +S+GD+R+AI LQ AA + IT + + V+ P+ ++
Sbjct: 173 EKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAV-SDEITEEIVYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F A +++ N++ + G +L Q+F V DIS++++ + + + E
Sbjct: 232 MTQLALNGKFVEAREQLYNLMIDWGMSGEDILIQVFREVPNL-DISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+G++E +QL
Sbjct: 291 DFRIVEGSNERIQL 304
>gi|294654838|ref|XP_456919.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
gi|199429188|emb|CAG84897.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
Length = 327
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 184/314 (58%), Gaps = 11/314 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE V L +E N PHM+ G PG GKTT+ +A++L GP
Sbjct: 12 PWVEKYRPHKLDDIVGNEETVERLKLLVEDGNMPHMIISGLPGIGKTTSIHCLAYELLGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELY+ LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 72 ELYQQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPAGRHKIIILDEADSMTP 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ LS+E + R+L +
Sbjct: 125 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYTKLSDEQVLERLLEVTKL 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + ++E L L ++GD+R+AI LQ FG + ++ + P V++ +
Sbjct: 185 EDVKYNSEGLQALIFTAEGDMRQAINNLQSTVAGFG-FVNDINVFKIVDQPHPLVIKKIL 243
Query: 290 AVC---RSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
A C + G+ D A + ++N+ +GY A +++ F V IS+ ++ + K + V
Sbjct: 244 ASCCSNKGGNIDEALELLDNLWEKGYSAIDIVTSSFRVAKTLPGISESKRLDMIKEIGFV 303
Query: 347 DKCLVDGADEYLQL 360
+++G YLQL
Sbjct: 304 HMRVLEGVSSYLQL 317
>gi|384497070|gb|EIE87561.1| hypothetical protein RO3G_12272 [Rhizopus delemar RA 99-880]
Length = 259
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/255 (48%), Positives = 171/255 (67%), Gaps = 3/255 (1%)
Query: 113 KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQ 172
KSRVLELNASD+RGINV+R K+K F+ + + + GYPCPPYKIIILDEADSMT+DAQ
Sbjct: 2 KSRVLELNASDERGINVIREKVKDFSRSTLTT--KVSGYPCPPYKIIILDEADSMTKDAQ 59
Query: 173 NALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGL 232
+ALRRTMETYS TRF ICNY+SRIIEP+ SRCAKFRF L E + R+ IC +EG+
Sbjct: 60 SALRRTMETYSTTTRFCIICNYVSRIIEPITSRCAKFRFTSLPVEDLEQRLEMICLQEGV 119
Query: 233 NLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVC 292
L + TL S GDLR+AIT+LQ L ++T + + ++G IP E+++ +
Sbjct: 120 QLAPNTMQTLIQCSGGDLRKAITFLQSGYNL-KETVTPRMVHEMAGRIPDELIDDCRELW 178
Query: 293 RSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVD 352
S D + K V I+ +GY A LLSQL + ++ + +S Q++ I + ++ VD L+
Sbjct: 179 ASQDVNEIEKVVKRIMMDGYSAENLLSQLHEKMIADDSLSTLQKSNISQIMSTVDIDLIQ 238
Query: 353 GADEYLQLLDVASNV 367
G DE+LQ+L++ +
Sbjct: 239 GGDEHLQVLNLMMQI 253
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 189/312 (60%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + P+K+++LDEAD+MT D
Sbjct: 70 -YTEYFLELNASDERGIDVIRNKVKEFARTVIPGD--------IPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+++I E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
D +AL T+ I+ GD+R++I LQ AA +G I+ + + V G+ P+ V +
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQ-AASAYG-KISVEAVFKVLGLAQPKEVREMIN 238
Query: 291 VCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ G F A ++ +I G ++ Q+ + +E IS+E + + + E +
Sbjct: 239 LALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEF 298
Query: 349 CLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 299 RIIEGADDEIQL 310
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 191/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + P+K+++LDEAD+MT D
Sbjct: 70 -YVEYFLELNASDERGIDVIRNKVKEFARTVIPGN--------VPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+++I E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
D +AL T+ I+ GD+R++I LQ AA +G I+ + + V G+ P+ V + +
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQ-AASAYG-KISVEAVFKVLGLAQPKEVREMIS 238
Query: 291 VCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ G F A +++ ++ G ++ Q+ + +E IS+E + + + E +
Sbjct: 239 LALQGKFTQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEF 298
Query: 349 CLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 299 RIIEGADDEIQL 310
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 188/325 (57%), Gaps = 13/325 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EGDEQTAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+E + V I E + + E + L + GD+RRAI LQ AA G + + + +
Sbjct: 173 DEAVGGMVREIAAAEDIEVTDEGIDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYA 231
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDE 334
++ PE +E + +GDF A ++ ++ E G ++ QL V E E +S+
Sbjct: 232 ITATARPEEIESMVTDALNGDFARARSTLDTLLTETGMAGGDVIDQLHRSVWEFE-LSER 290
Query: 335 QQARICKCLAEVDKCLVDGADEYLQ 359
+ R+ + + E D + +GA+E +Q
Sbjct: 291 EAVRLMERIGEADYRIAEGANEQVQ 315
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 188/318 (59%), Gaps = 12/318 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G +
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-D 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 AWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y+ TRF + NY+S IIEP+ SRCA FRF PL +E + SR+ I +
Sbjct: 116 DAQQALRRIMEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEAVLSRLRFIAEQ 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + EAL + +QGD+RRAIT LQ A+ + ++ + + G + P ++ +
Sbjct: 176 EGVKISQEALDAIFDFTQGDMRRAITALQIASSM-TKAVDEEAVAKALGYVSPSMLRQII 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
A G F A ++ ++A+G L L + V D+ + + + +++
Sbjct: 235 AEAIGGSFSKAMSQIYGLVADGGVGELELVRQIHREVLRLDVPEHLKPDLAFEVSKAHYA 294
Query: 350 LVDGADEYLQLLDVASNV 367
++ GA+ LQ+ + + +
Sbjct: 295 ILRGANGLLQIYGLLAKI 312
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 151/219 (68%), Gaps = 9/219 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
IC +EG+ + + L L IS GD R+AI LQGAA +
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI 210
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 188/325 (57%), Gaps = 13/325 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT + AIA Q++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTASTAIARQVYGDDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ ++++ I EG+ + + L + GD+RRAI LQ AA G + + + +
Sbjct: 173 DAAVAAQTREIAAAEGIEVTDAGVDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYA 231
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDE 334
++ PE +E + GDF A ++ ++ E G ++ QL V E D+S+
Sbjct: 232 ITATARPEEIESMVTNALDGDFTRARATLDQLLTETGMAGGDVIDQLHRSVWEF-DLSER 290
Query: 335 QQARICKCLAEVDKCLVDGADEYLQ 359
+ + + + E D + +GA+E +Q
Sbjct: 291 EAVALMERIGEADYRIAEGANEQVQ 315
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ + PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ + +M+ R+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAIFRFSPMPKNLMAERLRLIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L +A+ + +S+GD+R+AI LQ A ++ + + + P +++E LF
Sbjct: 176 EGVELRDDAIDIIYELSEGDMRKAINLLQVVAATNKVVDSNAVAAAAATIKPSDIIE-LF 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ GD A +++ ++ A + + F + + D+ +A I + LA++D
Sbjct: 235 NLAIGGDVSKAREKLRELMYLKGVAGVDFIRAFQRELIRMALDDDVKAEIAELLADIDYR 294
Query: 350 LVDGADEYLQL 360
L GADE +QL
Sbjct: 295 LTQGADEEIQL 305
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 195/314 (62%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E LNL+ + + +S+GD+R+AI LQ AA + IT + + V+ P+ ++
Sbjct: 173 EKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAV-SDEITEEIVYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F A +++ N++ + G +L Q+F V DIS++++ + + + E
Sbjct: 232 MTQLALNGKFVEAREQLYNLMIDWGMSGEDILIQVFREVPNL-DISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+G++E +QL
Sbjct: 291 DFRIVEGSNERIQL 304
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 192/313 (61%), Gaps = 14/313 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ D+ +QEE+ + L + +E N PH+LF GPPGTGKTT ALA+AH+L+G +
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG-D 62
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI+V+R K+K FA A +G P+KI+ LDEAD++T
Sbjct: 63 AWRENFLELNASDERGIDVIRHKVKEFARAKPIGD---------VPFKIVFLDEADALTR 113
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME YS+ TRF CNY S+IIEP+ SR F+FKPL +E + I
Sbjct: 114 DAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKG 173
Query: 230 EGLNLDA--EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
EGL L+ E ++ L I++GDLR+AI LQ AA + +IT L ++ + P+ ++
Sbjct: 174 EGLILENEDEIINALYDIAEGDLRKAINILQAAA-MMSKTITVDRLYEIASIAKPKEIDE 232
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ G+F A + +++ + + + + V + ISD ++ I + +++
Sbjct: 233 VLNKAMQGNFLEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIE 292
Query: 348 KCLVDGADEYLQL 360
+V+GAD+ +QL
Sbjct: 293 FRIVEGADDLVQL 305
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 191/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q E++ L ++ N PH+LF GP GTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPSGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + S P+K+++LDEAD+MT D
Sbjct: 70 -YVEYFLELNASDERGIDVIRNKVKEFARTVIPSN--------VPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+++I E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
D +AL T+ I+ GD+R++I LQ AA +G I+ + + V G+ P+ V + +
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQ-AASAYG-KISVEAVFKVLGLAQPKEVREMIS 238
Query: 291 VCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ G F A +++ ++ G ++ Q+ + +E IS+E + + + E +
Sbjct: 239 LALQGKFTQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEF 298
Query: 349 CLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 299 RIIEGADDEIQL 310
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 188/325 (57%), Gaps = 13/325 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QE +V L + +E + PH+LF GP GTGK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLDDIHGQEAIVERLQSYIEQDDIPHLLFGGPAGTGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA Q++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIARQVYGDDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T++AQ ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDEAQAALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ ++++ I EG+ + E + L + GD+RRAI LQ AA G + + + +
Sbjct: 173 DAAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQAAATT-GEIVDEEAVYA 231
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDE 334
++ PE +E + GDF A ++ ++ E G ++ QL V E D+S+
Sbjct: 232 ITATARPEEIESMVTNALHGDFTRARATLDTLLTETGMAGGDVIDQLHRSVWEF-DLSER 290
Query: 335 QQARICKCLAEVDKCLVDGADEYLQ 359
+ + + + E D + +GA+E +Q
Sbjct: 291 EAVALMERIGEADYRIAEGANEQVQ 315
>gi|428673231|gb|EKX74144.1| replication factor C subunit 2, putative [Babesia equi]
Length = 228
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 148/211 (70%), Gaps = 2/211 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKLSDVVFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGA 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
E + RVLELNASD+RGI+VVR +IKT+ + + + + P YK+IILDEAD +
Sbjct: 68 EGMRERVLELNASDERGIDVVRDRIKTYTRINISNNKINPETKRVMPNYKMIILDEADMI 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E YS ++RF ICNY+ +II P+ SRC+ F FKP+ + R+ +IC
Sbjct: 128 TSDAQAALRRVIENYSNISRFILICNYLHKIIGPIYSRCSAFHFKPIEQNSQVDRLEYIC 187
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+EG+ AL L+ ISQGD+R++IT LQ
Sbjct: 188 KQEGIAYTTSALQFLTKISQGDMRKSITILQ 218
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 186/313 (59%), Gaps = 15/313 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + +V +Q+EVV L +E N PHMLF GPPGTGKTT A +AH L+G +
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASD+R I V+R K+K FA A VG P+KI++LDEAD+MT
Sbjct: 69 -YRKYMLELNASDERKIEVIRGKVKEFARARVVGD---------VPFKIVLLDEADNMTA 118
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME YS TRF NY S+IIEP+ SR A FRF PLS E + R+ +ICN
Sbjct: 119 DAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNA 178
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + +AL T+ +S+GD+RRAI LQ AA L + + + V G+ P V +
Sbjct: 179 EKIECAEKALETIYELSEGDMRRAINILQTAAAL--GEVVEEAVYKVLGMAHPREVREMI 236
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLF-DVVVETEDISDEQQARICKCLAEVD 347
+G+F A ++ ++ E G ++ Q+ ++ + I DE + I E+
Sbjct: 237 NTALAGNFTEARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQ 296
Query: 348 KCLVDGADEYLQL 360
LV+GAD+ +QL
Sbjct: 297 FRLVEGADDEIQL 309
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 188/326 (57%), Gaps = 13/326 (3%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EADEQAAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDE+DS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+E + V I E + + + L + GD+RRAI LQ AA G + + + +
Sbjct: 173 DEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYA 231
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDE 334
++ PE +E + +GDF A ++ ++ E G ++ QL V E E +S+
Sbjct: 232 ITATARPEEIESMVTDALNGDFARARSTLDTLLTETGMAGGDVIDQLHRSVWEFE-LSER 290
Query: 335 QQARICKCLAEVDKCLVDGADEYLQL 360
+ R+ + + E D + +GA+E +QL
Sbjct: 291 EAVRLMERIGEADYRIAEGANEQVQL 316
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/311 (42%), Positives = 185/311 (59%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + +V +Q E+V L + N PHMLF GPPGTGKTT A +AH L+G
Sbjct: 8 WTEKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYGDN 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI V+R+K+K FA V P+KII+LDEAD+MT D
Sbjct: 68 -YRQYILELNASDERGIEVIRSKVKEFARTRVVGN--------VPFKIILLDEADNMTAD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SR A FRF PL E + R+ +IC+ E
Sbjct: 119 AQQALRRLMELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKYICSNE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ +AL+T+ +S+GD+RRAI LQ +A L T +++ V G+ P V +
Sbjct: 179 KVKCHEDALNTIFELSEGDMRRAINILQASAAL--GEATVENVYKVVGLAHPREVREMIQ 236
Query: 291 VCRSGDFDLA-NKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ SG+F A NK +I G ++ Q+ + ++ I DE + I + E+
Sbjct: 237 LALSGNFAEARNKLRTLMITYGLSGVDVVKQIHKEIFSSDIKIPDEIKIVIADLVGEIQF 296
Query: 349 CLVDGADEYLQ 359
LV+GAD+ +Q
Sbjct: 297 RLVEGADDEIQ 307
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 185/311 (59%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ D+ Q E ++ L + + T N PH+LF GPPG GKT A+AIA +LFG +
Sbjct: 6 WIEKYRPFKLDDIVGQGEAIKRLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKELFG-D 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ ELNASD+RGI+VVRTKIK F+ + G +KII LDEAD++T D
Sbjct: 65 AWHQNFTELNASDERGIDVVRTKIKDFSKTSPIGG--------ADFKIIFLDEADALTPD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF+ LS E + RV +I +E
Sbjct: 117 AQSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSYEAVEKRVRYIAEQE 176
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
GL + + + + +SQGD+R+AI LQ +A L I + ++ PE +E L
Sbjct: 177 GLQISEDGVEAIKYVSQGDMRKAINALQASA-LIDDVIDKDTIYKITATAHPEEIEELVQ 235
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A + + +++E G ++ Q++ + DI ++ + + E+D
Sbjct: 236 KALDGNFKAARETMEKLMSEQGLSGEDVVGQIYRAIFNL-DIPEKLMVELVDKIGEIDFR 294
Query: 350 LVDGADEYLQL 360
L +GA+E +QL
Sbjct: 295 LTEGANERIQL 305
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 189/312 (60%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +Q+E+V L ++ N PH+LF GPPGTGKTT ALA+ L+G
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA + P+K+I+LDEAD+MT D
Sbjct: 67 -YRQYFLELNASDERGIDVIRNKVKEFARTVASNN--------VPFKVILLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R++ I E
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNE 177
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ D + + T+ I+QGD+R+AI +Q AA +G IT + + V G+ P+ + +
Sbjct: 178 KVEFDPKGIETIFDITQGDMRKAINVIQ-AASAYG-KITVETVYKVLGLAQPKEIREMLH 235
Query: 291 VCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ SG F A ++ +I G ++ Q+ + E I D+ + + EV+
Sbjct: 236 LALSGKFLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEF 295
Query: 349 CLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 296 RIMEGADDEIQL 307
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 187/325 (57%), Gaps = 13/325 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ Q E+V L + + + PH+LF GP G GK
Sbjct: 3 EGDEQTAATATGREIWIEKYRPQTLDDIHGQSEIVERLQSYIAQDDVPHLLFSGPAGIGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+E + V I E + + E + L + GD+RRAI LQ AA G + + + +
Sbjct: 173 DEAVGGMVREIAAAEDIEVTDEGIDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYA 231
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDE 334
++ PE +E + +GDF A ++ ++ E G ++ QL V E E +S+
Sbjct: 232 ITATARPEEIESMVTDALNGDFARARSTLDTLLTETGMAGGDVIDQLHRSVWEFE-LSER 290
Query: 335 QQARICKCLAEVDKCLVDGADEYLQ 359
+ R+ + + E D + +GA+E +Q
Sbjct: 291 EAVRLMERIGEADYRIAEGANEQVQ 315
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/312 (42%), Positives = 184/312 (58%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + +V +Q+EVV L +E N PHMLF GPPGTGKTT A +AH L+G +
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+R I V+R K+K FA V P+KI++LDEAD+MT D
Sbjct: 69 -YRKYMLELNASDERKIEVIRGKVKEFARTRVVGD--------VPFKIVLLDEADNMTAD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS TRF NY S+IIEP+ SR A FRF PLS E + R+ +ICN E
Sbjct: 120 AQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ +AL T+ +S+GD+RRAI LQ AA L + + + V G+ P V +
Sbjct: 180 KIECAEKALETIYELSEGDMRRAINILQTAAAL--GEVVEEAVYKVLGMAHPREVREMIN 237
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLF-DVVVETEDISDEQQARICKCLAEVDK 348
+G+F A ++ ++ E G ++ Q+ ++ + I DE + I E+
Sbjct: 238 TALAGNFTEARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQF 297
Query: 349 CLVDGADEYLQL 360
LV+GAD+ +QL
Sbjct: 298 RLVEGADDEIQL 309
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 195/314 (62%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E L L+ + + +S+GD+R+AI LQ AA + ++T + + V+ P+ ++
Sbjct: 173 EKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAV-SDTVTEEIVYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F + +++ N++ + G +L Q+F V DIS++++ + + + E
Sbjct: 232 MTQLALNGKFVESREQLYNLMIDWGMSGEDILIQIFREVPNL-DISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+G++E +QL
Sbjct: 291 DFRIVEGSNERIQL 304
>gi|17554730|ref|NP_498521.1| Protein RFC-4 [Caenorhabditis elegans]
gi|1703051|sp|P53016.1|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|351049703|emb|CCD63405.1| Protein RFC-4 [Caenorhabditis elegans]
Length = 334
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 191/333 (57%), Gaps = 20/333 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV K VL W EKYRPK + D+A+Q+EVV +L L+ + PH+LFYGPPGTGK
Sbjct: 6 EVDNKRPKVLT----WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGK 61
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+ ALA QLF ++ RVL+LNASD+RGI VVR KI++F+ ++G R
Sbjct: 62 TSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLK--- 118
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
KIIILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L
Sbjct: 119 LKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLP 178
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
E+ R+ IC+ EG + + L + S+GDLRRA+ LQ A + S +
Sbjct: 179 AEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGDDNARNCY 238
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIA------EGYPASLLLSQLFDVVVETE 329
+ G ++ VC+S + +V IIA + + + F +++ +
Sbjct: 239 LRGSSDSLLISN---VCKS----ILTADVPQIIALTKDITKSCTGVAFIRRCFQQLMDED 291
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
I+DE + K +A +K ++DG D LLD
Sbjct: 292 VINDENIGVMGKLVATCEKRILDGCDLENNLLD 324
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 192/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +KD+ +Q+++ L ++ N PH+LF GPPGTGKTT A A+AH L+G E
Sbjct: 17 WTEKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYG-E 75
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+ +R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 76 SYQQFMLELNASDERGIDTIREKVKEFA--------RSKTPPEIPFKIVLLDEADNMTSD 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS TRF NY S+II+P+ SRCA FRF L +E + R+ +I ++E
Sbjct: 128 AQQALRRLMELYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKYIADKE 187
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G++ + +AL + IS+GD+R+AI LQ +A L +TS+ + V G+ P+ + +
Sbjct: 188 GVDYEEDALDIIFEISEGDMRKAINILQASAYL--GKVTSELVFKVVGMARPKDITDMIE 245
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
G+F A + + ++ E G ++ Q+ ++ + I+DE + I L E+
Sbjct: 246 TALKGNFIEAREILRKVMIEYGLSGEDVVKQIHREIMGPDIKINDELRVLIADYLGEIHF 305
Query: 349 CLVDGADEYLQL 360
+ +G+DE +QL
Sbjct: 306 RISEGSDEDIQL 317
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 190/324 (58%), Gaps = 15/324 (4%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
K++ + ++ W EKYRP+ + +V +Q+E+V L +E + PHMLF GPPGTGKTT A
Sbjct: 19 KVSGLSEAELLWAEKYRPRTLDEVVNQKEIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMA 78
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKI 158
+AH L+G + YK +LELNASD+R I V+R K+K FA + VG P+KI
Sbjct: 79 HCLAHDLYGDD-YKKYMLELNASDERKIEVIRGKVKEFARSRVVGE---------VPFKI 128
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
++LDEAD+MT DAQ ALRR ME YS TRF NY S+IIEP+ SR A FRF PL +E
Sbjct: 129 VLLDEADNMTADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLRKED 188
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+ R+ +ICN E + D AL T+ +S+GD+RRAI LQ A L + + + V G
Sbjct: 189 VVERLRYICNAEKVKCDERALETIYELSEGDMRRAINILQTTAAL--GEVVEEAVYKVIG 246
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQ 336
+ P V + SG+F A ++ ++ E G ++ Q+ + E I DE +
Sbjct: 247 LAHPREVREMLNEALSGNFTEARNKLRTLMIEYGLSGVDIIRQIHKEIFSQEVKIPDEMR 306
Query: 337 ARICKCLAEVDKCLVDGADEYLQL 360
I E+ LV+GAD+ +QL
Sbjct: 307 VLIADLAGEIQFRLVEGADDEIQL 330
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 193/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT+ALA+ H L+G E
Sbjct: 6 WAEKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+ GINV+RTK+K FA V G P+K ++LDEAD+MT D
Sbjct: 65 NYDQFFLELNASDENGINVIRTKVKDFAR-TVTPGN-------VPFKTVLLDEADNMTSD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+II+P+ SR A FRF PL +E + R+ +I EE
Sbjct: 117 AQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEE 176
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ D ++L + ++ GD+R+AI LQ AA +G +T+ ++ V G+ P+ + +
Sbjct: 177 KVQYDVKSLEVVYDVTGGDMRKAINVLQAAAA-YG-KVTTDSVLKVLGLAQPKEIREMVK 234
Query: 291 VCRSGDF-DLANKEVNNIIAEGYPASLLLSQLF-DVVVETEDISDEQQARICKCLAEVDK 348
+ G F D +K ++ II G ++ Q+ D+ I +E + + L EV+
Sbjct: 235 LALQGKFLDSRSKLMSLIIDYGLSGEDIVKQVHRDIFSNEYQIPEELRVLMSDYLGEVEF 294
Query: 349 CLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 295 RIIEGADDEIQL 306
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 187/312 (59%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + ++ QEE + L ++ N PHMLF GPPGTGKTT ALA AH L+G
Sbjct: 12 WAEKYRPRSLDEIVDQEETIIRLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAHDLYGKN 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ VLELNASD+RGI+V+R KIK FA +V G P+K+IILDE+D++T D
Sbjct: 72 -YQQFVLELNASDERGIDVIRGKIKEFARTSVVGG--------VPFKLIILDESDNLTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME ++ +RF I NY S+IIEP+ SR A FRF PL +E + R+ I E
Sbjct: 123 AQQALRRMMENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIKRLKWILENE 182
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
++ + AL + IS+GD+R+AI LQ A+ + +T + V G+ P+ + +
Sbjct: 183 SVSYEESALEAVFEISEGDMRKAINVLQSASAI--GKVTVDTVYKVVGLAHPKEIREMLN 240
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ SGDF+ A + + ++ + G ++ Q+ + E D+S+E + I E+
Sbjct: 241 LALSGDFNGARERLRKLMMDYGLSGVDVIKQIHKEIFSNEIDLSEEMKLMIADYTGEILF 300
Query: 349 CLVDGADEYLQL 360
+ +G+D+ +QL
Sbjct: 301 RITEGSDDEIQL 312
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 185/310 (59%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ ++D+ QEE + L + + PH+LF GP G GKT++A AIA +++G +
Sbjct: 16 WIEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIYGDD 75
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK+FA R + Y+II LDEADS+T D
Sbjct: 76 -WRGNFLELNASDERGIDVVRDRIKSFA---------RSAFGGHDYRIIFLDEADSLTSD 125
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS+E +++++ I E
Sbjct: 126 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAIANQLGEIAEIE 185
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ + E L + GD+RR I LQ AA G + ++ + +V+ PE +E + A
Sbjct: 186 AIEVTDEGFDALVYAANGDMRRGINSLQAAATT-GDVVDAEAVYAVTATARPEDIEEMVA 244
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A ++ ++ + G ++ QL E E +SD R+ + L E D
Sbjct: 245 AAVDGDFPKARATLDTLLTDVGMAGGDIIDQLHRSAWEFE-LSDRAVVRLMERLGEADYR 303
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 304 IAEGANEQVQ 313
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 195/314 (62%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E L L+ + + +S+GD+R+AI LQ AA + ++T + + V+ P+ ++
Sbjct: 173 EKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAV-SDTVTEEIVYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F A +++ N++ + G +L Q+F V DIS++++ + + + E
Sbjct: 232 MTHLALNGKFVEAKEQLYNLMIDWGMSGEDILIQVFREVPNL-DISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+G++E +QL
Sbjct: 291 DFRIVEGSNERIQL 304
>gi|341892966|gb|EGT48901.1| hypothetical protein CAEBREN_08790 [Caenorhabditis brenneri]
Length = 349
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 176/314 (56%), Gaps = 1/314 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + ++ E+VV+ LT +E PH+LFYGPPGTGKTTT LA A ++
Sbjct: 9 SNLPWVEKYRPSKFDELVAHEQVVKTLTRFIENRTLPHLLFYGPPGTGKTTTVLAAARKM 68
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+ P S VLELNASD+RGI+VVR I TFA P+K++ILDEAD+
Sbjct: 69 YSPAKMASMVLELNASDERGIDVVRNTIVTFAQTKGLQSFASASSEQLPFKLVILDEADA 128
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQNALRR +E Y+ RF ICNY++ II + SRC +FRF PL ++++ R+ HI
Sbjct: 129 MTRDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQQLIVPRLQHI 188
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
+ E + + + L ++S+GD+R I LQ A F + S + P E+ E
Sbjct: 189 VDSESVKMTPDGQKALLTVSKGDMRTVINTLQSTAMSFDTVSESTVYQCIGQPTPNEMKE 248
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + + + + GY +++ L D+V T DI DE I L EV
Sbjct: 249 VVTCLLNKPSKECMETIKSRLFMNGYALQDVITHLHDIVF-TMDIPDEAMTSIICGLGEV 307
Query: 347 DKCLVDGADEYLQL 360
++ L G LQL
Sbjct: 308 EENLASGCSNELQL 321
>gi|374628354|ref|ZP_09700739.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
gi|373906467|gb|EHQ34571.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
Length = 325
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 200/328 (60%), Gaps = 14/328 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ W+EKYRPK++ DV Q+E+V L + ++T + PH+LF G G GKTT+A+A+A +
Sbjct: 3 ESNTIWIEKYRPKRLDDVVGQKEIVSRLKSYVKTKSLPHLLFTGTAGIGKTTSAVALAKE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEA 164
+G E + E+NASD+RGI+VVR +IK FA A +G + +KI+ LDEA
Sbjct: 63 FYG-EHWNVNFREMNASDERGIDVVRNQIKQFARTAPIGGAE---------FKILFLDEA 112
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME Y++ RF CNY S+II+P+ SRCA +RF+PL E ++ ++
Sbjct: 113 DALTNDAQAALRRTMENYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAITEELM 172
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
HI EGL L +A+S + +S GD+R+AI LQGAA + I + + ++ P+
Sbjct: 173 HIAENEGLTLSEDAISAIIYVSAGDMRKAINALQGAA-IIDPEIKEEMIFEITSTAKPDE 231
Query: 285 VEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+ L + DFD A +++ + + G + L++QL+ +V + I E + + L
Sbjct: 232 ILELLEIIIEADFDGAGHKLDELTVKRGIAPNELINQLYRTIVSHKTIGRELKLEMISHL 291
Query: 344 AEVDKCLVDGADEYLQLLD-VASNVIRA 370
E D + +G+D +Q+ +A +VI A
Sbjct: 292 GETDFRISEGSDPGIQMEALIARSVISA 319
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 189/311 (60%), Gaps = 11/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV Q+E+V L + ++T + PH+LF GP G GKTT+A+A+A + FG E
Sbjct: 8 WTEKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALAREFFG-E 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ ELNASD+RGI+VVR +IK FA A G +KI+ LDEAD++T D
Sbjct: 67 NWQVNFRELNASDERGIDVVRNQIKQFARTAPMGG--------AEFKILFLDEADALTND 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y+ RF CNY S+II+P+ SRCA +RF+PL E ++ + I E
Sbjct: 119 AQAALRRTMENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVTEELNRIAKTE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
GL++ +A+S + ++QGD+R+AI LQG A + I + + ++ P+ + L +
Sbjct: 179 GLSITEDAMSAIIYVAQGDMRKAINALQGGA-IISPEIKEEMIYEITSTARPDEIRELLS 237
Query: 291 VCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ G+F+ A ++N +I G LL+Q + +++ ++I + + + L + D
Sbjct: 238 IIMDGNFNAAEHKLNGLITGRGIAPLELLNQFYRTLIDNQEIDRKMKVEMISHLGDADFR 297
Query: 350 LVDGADEYLQL 360
+ +GA+ +Q+
Sbjct: 298 ISEGANPNIQM 308
>gi|443896635|dbj|GAC73979.1| replication factor C, subunit RFC2 [Pseudozyma antarctica T-34]
Length = 374
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 189/335 (56%), Gaps = 16/335 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV ++ + L NCPH+L G PG GKTT+ L +A L G
Sbjct: 22 PWVEKYRPLNLDDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RG++VVR KIKTFA Q++ P +KI+ILDEADSMT
Sbjct: 81 DAYKEGVLELNASDERGVDVVRNKIKTFA-------QKKVSLPAGRHKIVILDEADSMTP 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ + +E + R+L IC
Sbjct: 134 AAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVKDEQILKRLLEICEM 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L+ + ++GD+R+AI LQ G + +++ V P ++ L
Sbjct: 194 EKVEYTDEGLAAIIFTTEGDMRQAINNLQSTWTGLG-FVNPENVFKVCDQPHPFLIRALL 252
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ GD DLA +++ I A+GY A +++ LF VV + I + + K +
Sbjct: 253 TACQEGDVDLAMDKLDEIWAKGYAAVDIVTTLFRVVKTMDRIPEATKLEFIKEIGWTHMK 312
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQYD 381
+++G +QL +I +C + P++FQ D
Sbjct: 313 ILEGVATVVQL----GGLIARLCKLSIDPKQFQQD 343
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 189/325 (58%), Gaps = 13/325 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QE +V L + ++ + PH+LF GP G GK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLGDIHGQEAIVERLQSYIDQDDIPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREVYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ ++ + I EG+ + + L + GD+RRAI LQ AA G + + + +
Sbjct: 173 DAAVAGQTREIAAAEGIEVTDAGVDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYA 231
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDE 334
++ PE +E + +GDF A +++++ E G ++ QL V E D+S+
Sbjct: 232 ITATARPEEIESMVTDALAGDFAKARATLDSLLTETGMAGGDVIDQLHRSVWEF-DLSER 290
Query: 335 QQARICKCLAEVDKCLVDGADEYLQ 359
+ ++ + + E D + +GA+E +Q
Sbjct: 291 EAVKLMERIGEADYRIAEGANEQVQ 315
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 187/313 (59%), Gaps = 13/313 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + ++ QE++V L + ++ + H +F GP G GKTT+A AIA +L+G
Sbjct: 16 EVWIEKYRPQTLDEIVGQEDIVERLQSYVDRNDLSHFMFSGPAGIGKTTSATAIARELYG 75
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA + G GY Y+II LDEAD++T
Sbjct: 76 DD-WRDNFLELNASDERGIDVVRDRIKNFARTSFG------GYE---YRIIFLDEADALT 125
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ ALRRTME +S RF CNY S+II+P+ SRCA FRF PLS+E ++ + HI
Sbjct: 126 SDAQGALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVAEEMRHIAG 185
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EEG+ + L L + GD+R+AI LQ AA + G + + + +++ PE ++ +
Sbjct: 186 EEGIEFTDDGLDALVYAADGDMRKAINALQ-AASVTGDVVDEEAVYALTSTAKPEEIKEM 244
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+GDF A ++ ++ EG ++ QL V E D+ DE R+ + E +
Sbjct: 245 VDQALAGDFTAARSTLDRLLTEEGIAGGDVIDQLHRSVWEF-DLDDEAAVRLLDRIGETE 303
Query: 348 KCLVDGADEYLQL 360
+ GA+E +QL
Sbjct: 304 YRITTGANERIQL 316
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 188/312 (60%), Gaps = 13/312 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ ++D+A E +V L + + + HMLF GP G GKTT A AIA +L+G
Sbjct: 13 EVWIEKYRPQTLEDIAGHEAIVERLGSYVSRNDLSHMLFAGPAGVGKTTAATAIARELYG 72
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGI+VVR ++K+FA + G GY Y+II LDEAD++T
Sbjct: 73 -EDWEENFLELNASDERGIDVVRDRVKSFARTSFG------GYD---YRIIFLDEADALT 122
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL++E + +++ I
Sbjct: 123 ADAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEAQIRQIAQ 182
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EE +++ + + L ++ GD+R+AI LQ AA + G ++ + + ++ PE + +
Sbjct: 183 EEVIDVTEDGIEALVYVAGGDMRKAINGLQ-AASMSGDTVNEEAVFEITSTARPEDIREM 241
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ GDF A ++ ++ EG ++ QL V E D+SD R+ + E D
Sbjct: 242 VDLALDGDFTAARSRLDTLLTEEGIAGGDIIDQLHRTVWEF-DLSDAAAVRVLDRVGEAD 300
Query: 348 KCLVDGADEYLQ 359
+ +GA E +Q
Sbjct: 301 YRITEGASERIQ 312
>gi|402590253|gb|EJW84184.1| Rfc4 protein [Wuchereria bancrofti]
Length = 286
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/266 (47%), Positives = 166/266 (62%), Gaps = 3/266 (1%)
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDDRGINVVRTKIK 135
L P++LFYGPPGTGKT+ A+A+ QLF + Y+ RV+E+NASD+RGIN+VR KIK
Sbjct: 7 LHIFQLPNLLFYGPPGTGKTSAAIALCRQLFRNTVTYRDRVMEMNASDERGINIVRNKIK 66
Query: 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195
FA AV S G P K+IILDEAD+MT AQ ALRRTME S+ TRFF ICNYI
Sbjct: 67 EFARRAVSS-HLPDGSPVVGLKVIILDEADAMTTPAQAALRRTMERESRTTRFFLICNYI 125
Query: 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
+RII+PL SRCAKFRFK +S E R+ IC E + D A+S L + GD+R+++T
Sbjct: 126 TRIIDPLTSRCAKFRFKSISSESQEKRLEWICQNENIEFDPLAISELIELCDGDMRKSVT 185
Query: 256 YLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPAS 315
LQ + I + D+ G +P +VV+ A CRS + + + NI EGY
Sbjct: 186 ALQTISSCHKKLIPT-DVRQFLGAVPDDVVQQFVASCRSLNHNQLYACIENIRREGYGVY 244
Query: 316 LLLSQLFDVVVETEDISDEQQARICK 341
LL Q F + + ED++D +A IC+
Sbjct: 245 QLLKQFFYICLRLEDLTDLNKATICE 270
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 195/314 (62%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E L L+ + + +S+GD+R+AI LQ AA + ++T + + V+ P+ ++
Sbjct: 173 EKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAV-SDTVTEEIVYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F A +++ N++ + G +L Q+F V DIS++++ + + + E
Sbjct: 232 MTQLALNGKFVEAREQLYNLMIDWGMSGEDILIQVFREVPNL-DISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+G++E +QL
Sbjct: 291 DFRIVEGSNERIQL 304
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 182/310 (58%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QEE+V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 79 -WRGNFLELNASDQRGIDVVRDRIKNFA---------RSSFGGHDYRIIFLDEADSLTND 128
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ + I E
Sbjct: 129 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAKAE 188
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ L + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 189 GIELTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITSTARPEDIETMVR 247
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V + D+ + R+ + + E D
Sbjct: 248 DAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWDF-DLDERAAVRLMERIGEADYR 306
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 307 ISEGANEQVQ 316
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 191/319 (59%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E++V L +E + PH+LF GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHEDIVPRLQRYVEQNDLPHLLFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDALEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ I EEG+ + + + L + GD+R+AI LQ AA + G + + + +++ P
Sbjct: 181 IREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAA-VMGEVVDEETVFAITSTARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ E G ++ QL + DIS+ R+ +
Sbjct: 240 EEVEAMVDQAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWQF-DISETATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 184/313 (58%), Gaps = 13/313 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 -EDWREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + +I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EEG+ L + L L + GD+R+AI LQ AA + G ++ + +++ PE + +
Sbjct: 184 EEGIELTEDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTM 242
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
GDF + ++ ++ EG ++ QL + E DI DE R+ + + E D
Sbjct: 243 VQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIEDEAAVRVLERIGETD 301
Query: 348 KCLVDGADEYLQL 360
+ GA+E +QL
Sbjct: 302 YRITRGANERVQL 314
>gi|344231186|gb|EGV63068.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 325
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/319 (40%), Positives = 182/319 (57%), Gaps = 9/319 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N PHM+ G PG GKTT+ +A +L GP
Sbjct: 12 PWVEKYRPHKLDNIVGNEETVERLKLIANDGNMPHMIISGLPGIGKTTSIHCLALELLGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELYKS LELNASDDRGI+VVR +IK FA Q + P +KIIILDEADSMT
Sbjct: 72 ELYKSATLELNASDDRGIDVVRNRIKQFA-------QTKIQLPPGRHKIIILDEADSMTP 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ L+++ + +R+L +C
Sbjct: 125 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLTRLLEVCKL 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L L ++GD+R+AI LQ FG + ++ + P V+ +
Sbjct: 185 ENVQFNTEGLQALIFTAEGDMRQAINNLQSTVAGFG-MVNDVNVFKIVDQPHPLVIRKML 243
Query: 290 -AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ C S D D A ++ + +GY A +++ F V DI++ ++ + K +
Sbjct: 244 RSCCSSQDIDNAIDLLDGLWVKGYSAIDIVTSAFKVAKTLPDINESKRLEVIKEIGFTHM 303
Query: 349 CLVDGADEYLQLLDVASNV 367
+++G YLQL + + +
Sbjct: 304 RVLEGVSTYLQLCGMLAKI 322
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 182/310 (58%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QEE+V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 79 -WRGNFLELNASDQRGIDVVRDRIKNFA---------RSSFGGHDYRIIFLDEADSLTND 128
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ + I E
Sbjct: 129 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAAAE 188
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ L + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 189 GIELTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITSTARPEDIEQMVR 247
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V + D+ + R+ + + E D
Sbjct: 248 DAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWDF-DLDERAAVRLMERIGEADYR 306
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 307 ISEGANEQVQ 316
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 190/312 (60%), Gaps = 14/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ D+ Q E + L + +++ N PH+LF GPPG GKT TA++IA +LF +
Sbjct: 21 WIEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFA-D 79
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ ELNASD+RGI+VVRTKIK+FA + G +KII LDEAD++T D
Sbjct: 80 SWRENFTELNASDERGIDVVRTKIKSFAKTSPIGG--------ADFKIIFLDEADALTSD 131
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF+PLS++ ++ RV + + E
Sbjct: 132 AQAALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAVTERVRFVASNE 191
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI-SVSGVIPPEVVEGLF 289
G+ + + + + ++QGD+R+AI LQ A+ + ++ KD I ++ PE + L
Sbjct: 192 GIEVATDGMEAIKYVAQGDMRKAINALQAASLV--DNVVHKDTIYKITATARPEQITDLI 249
Query: 290 AVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
SG+F A K ++ ++ +G ++ Q++ + I E+ + + EVD
Sbjct: 250 NTALSGNFMAARKYLDELLLDQGLSGEDVVGQIYRAMFNIS-IPQEKMVELIDVIGEVDF 308
Query: 349 CLVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 309 RIAEGANERIQL 320
>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 191/323 (59%), Gaps = 18/323 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPW+EK+RP+ ++D+ EE ++ + ET N PH+L GPPGTGKTT+ L +AH + G
Sbjct: 3 QPWIEKHRPQCLEDIVGNEETIKRMKVITETGNLPHILLAGPPGTGKTTSMLCLAHAMLG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ YK+ V+ELNASDDRGI+VVR KIK FA Q + P +K+++LDEADSMT
Sbjct: 63 -DAYKTAVIELNASDDRGIDVVREKIKLFA-------QSKVSLPEGSHKLVLLDEADSMT 114
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRR ME YS TRF +CN S+IIEP+ SRCA RF L + + R+LHIC
Sbjct: 115 PAAQQALRRIMELYSSTTRFALVCNISSKIIEPIQSRCAILRFNRLKDTEILDRLLHICE 174
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS-KDLISVSGVIPPEVVEG 287
EE + + LS L + GDLR A+ LQ A +G ++ + +++I V PP V +
Sbjct: 175 EEKITYTNDGLSALLFCADGDLRVAVNSLQ--ATFYGFNVVNEENVIKVCDQPPPVVAKQ 232
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ C S D A + + GY +S ++ +F V T+D ++ ++ + L E+
Sbjct: 233 IVQCCVSKDMVGARSGMTQLWNLGYSSSDIVGTIFKV---TKDADLTEKLKL-EFLKEIG 288
Query: 348 KC---LVDGADEYLQLLDVASNV 367
C + +GA LQLL + + +
Sbjct: 289 ICQLRIAEGATTLLQLLGLVAKM 311
>gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913230|sp|O94449.1|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe]
Length = 342
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 182/311 (58%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L + N PH++ G PG GKTT+ L +AH L GP
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 82 A-YKEGVLELNASDERGIDVVRNRIKAFA-------QKKVILPPGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L+++ + R+L+IC
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKA 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +N + L+ L ++GD+R+A+ LQ FG + +++ V+ P + +
Sbjct: 194 EKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFG-LVNGENVFRVADQPSPVAIHAML 252
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+SG+ D+A +++ I G+ A +++ +F VV + I + + + K + +
Sbjct: 253 TACQSGNIDVALEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMI 312
Query: 350 LVDGADEYLQL 360
+++G LQL
Sbjct: 313 ILEGVQTLLQL 323
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 184/311 (59%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QE++V L + + + PH+LF GP G GKTT A AIA +++G +
Sbjct: 14 WIEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 74 -WRGNFLELNASDERGIDVVRDRIKNFA---------RASFGGHDYRIIFLDEADSLTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS++ ++ ++ I + E
Sbjct: 124 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAVAGQIRKIADRE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + E L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 184 GIEMTDEGLDALVYAADGDMRRAINSLQAAATT-GGVVDEEAVYLITSTARPEEIESMVT 242
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A +++ ++ + G ++ QL + + + R+ + + E D
Sbjct: 243 AAIEGDFAQARSKLDTLLTDTGMAGGDIIDQLHRGAWDF-GLDQRETVRLMERIGEADYR 301
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 302 ITEGANEQVQL 312
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 193/319 (60%), Gaps = 10/319 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 6 PTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILAC 65
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ P + S VLE+NASDDRGIN+VR +I +FA + G+ R G +K+IILD
Sbjct: 66 ARKLYTPAQFNSMVLEMNASDDRGINIVRGQILSFA--STGTMYRSG------FKLIILD 117
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PLS + + R
Sbjct: 118 EADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPR 177
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ I EE LN+ + L ++S GD+R+ + LQ FG ++T +++ S G P
Sbjct: 178 LDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFG-AVTEENVYSCVGHPLP 236
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
++ + + ++L ++ +I + +G +L++L +++ + D +
Sbjct: 237 IDIKNIVNWLFNESYELCYCKIQDIKLKKGLALQDILTELHLFIIKVFEFPDSILIDLII 296
Query: 342 CLAEVDKCLVDGADEYLQL 360
LAE++K + G E +QL
Sbjct: 297 KLAEIEKRVSIGCSEAVQL 315
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 183/311 (58%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV E +V L +E + PH++F GP G GKT +A AIA +L+G E
Sbjct: 18 WIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG-E 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T D
Sbjct: 77 DWREHFLELNASDERGIDVVRDRIKNFA---------RSSFGGVKYRIIFLDEADALTSD 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF LS+E + ++ I E
Sbjct: 128 AQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETE 187
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G++L + + L + GD+R+AI LQ AA + G + + +++ PE VE +
Sbjct: 188 GISLTDDGVDALVYAAAGDMRKAINGLQAAA-VMGEEVDEAAVFAITSTARPEEVEKMVD 246
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A + +++ + G ++ QL E D+ + + R+ + L EVD
Sbjct: 247 QAIGGDFTAARATLEDLLTDRGLAGGDVIDQLHRSAWEF-DLGEHETVRLLERLGEVDYR 305
Query: 350 LVDGADEYLQL 360
+ +GA+E LQL
Sbjct: 306 ITEGANERLQL 316
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 186/311 (59%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ ++DV QE++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 16 WIEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYGDD 75
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA + G GY Y+II LDEADS+T D
Sbjct: 76 -WRGNFLELNASDERGIDVVRDRIKNFARASFG------GYD---YRIIFLDEADSLTSD 125
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ + +V I E
Sbjct: 126 AQSALRRTMEQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAVRKQVEAIAETE 185
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ L + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 186 GIELTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYLITSTARPEDIEEMVQ 244
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A ++ ++ + G ++ QL V E D+ + R+ + + E D
Sbjct: 245 SAIDGEFLAARSKLETLLVDTGMAGGDIIDQLHRSVWEF-DLDERATVRLMERIGEADYR 303
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 304 ITEGANEQVQL 314
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 191/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+ +Q+++V L ++ N PH+LF GPPGTGKTT+ALA+ + L+G E
Sbjct: 7 WAEKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYG-E 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA P+K ++LDEAD+MT D
Sbjct: 66 NYRQYFLELNASDERGIDVIRNKVKDFARTVTPQD--------VPFKTVLLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+II+P+ SR A FRF PL +E + SR+ I E
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNE 177
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ D +AL T+ I+ GD+R+AI LQ A+ +G +T++ + V G+ P+ + +
Sbjct: 178 KVEYDPKALDTIYEITSGDMRKAINILQ-ASSAYG-KVTTEAVYKVLGMAQPKEIREMVK 235
Query: 291 VCRSGDFDLA-NKEVNNIIAEGYPASLLLSQLF-DVVVETEDISDEQQARICKCLAEVDK 348
G F A +K ++ +I G ++ Q+ D+ I +E + + + EV+
Sbjct: 236 SALQGRFTEARSKLLSLMINYGLSGEDIVKQVHRDIFSNEFQIPEELRVIMADYVGEVEY 295
Query: 349 CLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 296 RIIEGADDEIQL 307
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 196/325 (60%), Gaps = 15/325 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + WVEKYRP+ + ++ QEE+V+ L ++ N PH+LF GPPGTGKTT ALA+AH L
Sbjct: 2 SEELWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEAD 165
+G E ++ LELNASD+RGI+V+R++IK +A + +G P+K++ILDEAD
Sbjct: 62 YG-ESWRDNTLELNASDERGIDVIRSRIKDYARTLPIGD---------VPFKLVILDEAD 111
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQ ALRRTME +S+ TRF I NY S+IIEP+ SRCA FRF+PL + R+
Sbjct: 112 NMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRW 171
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ +D AL + SQGDLR+AI LQ AA ++T + + + G + P+ V
Sbjct: 172 IAQQEGITVDDGALEAIWEESQGDLRKAINTLQ-AASAISRNVTEEVVYAALGRVKPKEV 230
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDI--SDEQQARICKC 342
+ G+ A ++ ++ G ++ + V+ + + D A +
Sbjct: 231 REMIESALKGNLLEARDKLRLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVL 290
Query: 343 LAEVDKCLVDGADEYLQLLDVASNV 367
+ E + +V+G+D+ +QL+ + S +
Sbjct: 291 VGETNYRIVEGSDDEIQLMALLSKL 315
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 184/311 (59%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV E +V L +E + PH++F GP G GKT +A AIA +L+G E
Sbjct: 18 WIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG-E 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T D
Sbjct: 77 DWREHFLELNASDERGIDVVRDRIKNFA---------RSSFGGVEYRIIFLDEADALTSD 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF LS+E + ++ I E
Sbjct: 128 AQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETE 187
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G++L + + L + GD+R+AI LQ AA + G + + + +++ PE VE +
Sbjct: 188 GISLTDDGVDALVYAAAGDMRKAINGLQAAA-VMGEEVDEEAVFAITSTARPEEVERMVD 246
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A + +++ + G ++ QL E D+ + + R+ + L EVD
Sbjct: 247 QAIGGDFTAARATLEDLLTDRGLAGGDVIDQLHRSAWEF-DLGEHETVRLLERLGEVDYR 305
Query: 350 LVDGADEYLQL 360
+ +GA+E LQL
Sbjct: 306 ITEGANERLQL 316
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 190/319 (59%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+ + D+ ++V L N +E + PH+LF GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
V I EG+++ + + L + GD+R+AI LQ AA + G ++ + + +++ P
Sbjct: 181 VREIAANEGIDVTDDGVDALVFAADGDMRKAINGLQAAA-VMGETVDEETVFAITATARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ E G ++ QL E D+ + R+ +
Sbjct: 240 EEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEF-DVPERATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 190/319 (59%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ D+ E +V LT +E + PH++F GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDDIKGHENIVPRLTRYVEQDDLPHLMFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYEDD-WQENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+++ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
V I EEG+ L + + L + GD+R+ I LQ AA + G ++ + +++ P
Sbjct: 181 VREIATEEGIELTDDGVDALVYAADGDMRKGINGLQAAA-VMGETVDEDTVFAITSTARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ + G ++ QL E DI ++ R+ +
Sbjct: 240 EEVEEMVDHAIDGDFTAARAALEDLLMDRGLAGGDVIDQLHRSAWEF-DIPEQATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 184/310 (59%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 187 GIEVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITSTARPEDIERMVR 245
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V E D+ + + R+ + + E D
Sbjct: 246 NAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEF-DLDEREAVRLMERIGEADYR 304
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 305 ISEGANEQVQ 314
>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Komagataella pastoris GS115]
gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Komagataella pastoris CBS 7435]
Length = 324
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 181/332 (54%), Gaps = 8/332 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MA L+ PWVEKYRPK +KD+ E+ + L N PHM+ G PG GKTT+
Sbjct: 1 MAAPLKLELPWVEKYRPKLLKDIVGNEDTIERLKAFAIDGNVPHMIISGLPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G ++Y VLELNASDDRGI VVR KIK FA ++ P +KI+I
Sbjct: 61 CLAHELLG-DMYYDAVLELNASDDRGIEVVRNKIKQFA-------HKKVSLPPGRHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRC+ R+ L +E +
Sbjct: 113 LDEADSMTPGAQQALRRTMEIYSGTTRFVFACNMSNKIIEPLQSRCSILRYSKLYDEQVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+L+IC EEG+ + L L ++GD+R+AI LQ G V
Sbjct: 173 SRLLYICKEEGVKYTDDGLEALIFTAEGDMRQAINNLQSTVAGMGLVNGDNVFRIVDSPH 232
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P V + LF + D D A +N + +GY A ++S F V+ +I + + +
Sbjct: 233 PLVVRQMLFKAVKDSDIDAAVDLLNRLWEKGYSAVDIVSTSFKVMKSVTEIPEADRLEVM 292
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372
+ + +++G YLQL + + + V
Sbjct: 293 REIGFTHMRVLEGVSSYLQLAGMLARITGTVV 324
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 191/314 (60%), Gaps = 13/314 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A AIA +++
Sbjct: 18 TEVWIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY 77
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + ++ LELNASD RGI+VVR +IK FA + G GY ++II LDEAD++
Sbjct: 78 GDD-WRENFLELNASDQRGIDVVRDRIKDFARASFG------GYD---HRIIFLDEADAL 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++V I
Sbjct: 128 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIA 187
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
EG+ + + + L + GD+R+AI LQ AA + G ++ + + +++ PE VE
Sbjct: 188 ETEGIEVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITATARPEEVEE 246
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ +GDF A + +++ + G ++ QL T DI ++ R+ + L EV
Sbjct: 247 MVDHAIAGDFTAARAALEDLLTDRGLAGGDVIDQLHRSAW-TFDIPEQATVRLLERLGEV 305
Query: 347 DKCLVDGADEYLQL 360
D + +GA+E LQL
Sbjct: 306 DFRITEGANERLQL 319
>gi|198426342|ref|XP_002130063.1| PREDICTED: similar to Replication factor C (activator 1) 2, 40kDa
[Ciona intestinalis]
Length = 336
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 180/311 (57%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV E V L N P+++ GPPG GKTT+ + +A + G
Sbjct: 18 PWVEKYRPTKLSDVVGNEATVSRLEVFANEGNVPNIIIAGPPGAGKTTSIMCLARTMLGA 77
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 78 S-YDVAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPKGKHKIIILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ LS+E + SR++ + ++
Sbjct: 130 GAQQALRRTMEIYSKTTRFALACNQSDKIIEPIQSRCAVLRYSKLSDEQILSRLMEVIDK 189
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ D L L +QGD+R+A+ LQ + F S I S ++ V P +++ +
Sbjct: 190 EGVRYDDSGLEALLFTAQGDMRQALNNLQSTHQGF-SFINSDNVFKVCDEPHPLLLKTML 248
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C D D A K +N++ A GY +++ +F V++T DI + + K +AE
Sbjct: 249 DHCVKADLDEAYKTINHLWAMGYSPDDIITNIFR-VLKTHDIPEYVKLEFIKLVAETHMR 307
Query: 350 LVDGADEYLQL 360
+V G + LQL
Sbjct: 308 IVQGVNSLLQL 318
>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
Length = 365
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 180/326 (55%), Gaps = 16/326 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + S+ PWVEKYRP ++ ++ E+VV+ LT +E PH+LFYGPPGTGKTTT LA
Sbjct: 5 PAVVSNLPWVEKYRPSKLDELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAA 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA--------AVAVGSGQRRGGYPCP 154
A +++ P S VLELNASD+RGI+VVR I FA A A S Q
Sbjct: 65 ARKMYSPARMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQSYATASSSDQ-------V 117
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
P+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY++ II + SRC +FRF PL
Sbjct: 118 PFKMVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPL 177
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
++++ R+ I N E + + ++ L ++S GD+R I LQ A F + S
Sbjct: 178 DQKLIVPRLDFIVNSENIKMTSDGRQALLTVSNGDMRTVINTLQSTAMSFDTVSESTVYQ 237
Query: 275 SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDE 334
+ P E+ + + + N + GY +++ L D V T DI DE
Sbjct: 238 CIGQPTPKEMKQVVSILLNDSAKTCMNLIKTKLFDNGYALQDVITHLHDWVF-TLDIPDE 296
Query: 335 QQARICKCLAEVDKCLVDGADEYLQL 360
+ I L EV++ L G QL
Sbjct: 297 AMSAIVTGLGEVEQNLASGCSNETQL 322
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 184/316 (58%), Gaps = 11/316 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP ++ D+ E++ + ++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 5 QIGLPWVEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLLFYGPPGTGKTSTILAVAKE 64
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+G + K VLELNASD RGINVVR +I FA+ C +K+IILDE D
Sbjct: 65 LYGAKNLKKMVLELNASDARGINVVRNEILNFAS--------SRSLHCKGFKVIILDECD 116
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQ ALRR ME ++K RF ICNY+ ++I + SRC +FRF PLS E M R+ H
Sbjct: 117 AMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINH 176
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ EEG+++D + L +++GD+RR++ LQ A+ L + +T + V+G +
Sbjct: 177 VVEEEGIDIDQNGMDLLLKMAEGDMRRSLNILQ-ASHLAFNKVTDDIVYKVTGRPRRNDI 235
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ + D + ++ E G + +L+ L++ + E D+ D +A I LA
Sbjct: 236 RRMMEWLLNQDIKYCMDSIEELMLENGIALNDVLTDLYEEICEA-DLPDIPKAEILSALA 294
Query: 345 EVDKCLVDGADEYLQL 360
+++ L GA E +QL
Sbjct: 295 DIEYRLNIGATEKIQL 310
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 186/312 (59%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +K++ +Q+E+V L+ + N PH+LF GPPGTGKTT A A+AH L+G
Sbjct: 10 WTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALAHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y +LELNASD+RGI+ +R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 70 -YTQYMLELNASDERGIDTIREKVKEFA--------RSKTPPDIPFKIVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS TRF N+ S+II+P+ SRCA FRF PL ++ + R+ +I +E
Sbjct: 121 AQQALRRLMELYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ D +AL + IS+GD+R+AI LQ AA L + S + V G+ P+ + +
Sbjct: 181 NVKYDEDALEAIYDISEGDMRKAINILQTAASLGKVDVDS--VYKVVGMARPKDIREMVE 238
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
GDF A + + ++ E G ++ Q+ + + I +E + I L E+
Sbjct: 239 EALKGDFTGARELLRKVMIEYGLSGEDVVRQIHRELFSNDLKIPEELRVMIADYLGEIHY 298
Query: 349 CLVDGADEYLQL 360
+V+G+D+ +QL
Sbjct: 299 RIVEGSDDDIQL 310
>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 341
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 190/333 (57%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV ++ + L NCPH+L G PG GKTT+ L +A L G
Sbjct: 21 PWVEKYRPMRLNDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RG++VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 80 DAYKEGVLELNASDERGVDVVRNKIKTFA-------QKKVSLPPGRHKIIILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ + +E + R+L IC
Sbjct: 133 AAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVRDEQILKRLLEICEM 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L+ + ++GD+R+AI LQ G ++ ++ V P ++ L
Sbjct: 193 EAVEYSDEGLAAIIFTTEGDMRQAINNLQSTWTGLG-FVSPDNVFKVCDQPHPFLIRALL 251
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ GD D A ++++ I ++GY A +++ LF VV + I + + + K +
Sbjct: 252 LSCKKGDIDDAMEKLDEIWSKGYAAVDIVTTLFRVVKTLDGIPEATKLKFIKEIGWTHMR 311
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL +I +C + P++FQ
Sbjct: 312 ILEGVATVVQL----GGLIARLCKLSMDPKQFQ 340
>gi|374724905|gb|EHR76985.1| replication factor C small subunit [uncultured marine group II
euryarchaeote]
Length = 328
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 193/324 (59%), Gaps = 14/324 (4%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+R+ P+ S+ WVE++RP+ V ++ Q +V+ L E PH+LF GPPGTGKTT
Sbjct: 6 RRQEEPM---SELWVERHRPQAVSEIRGQHAIVQRLAVYSEKKEFPHLLFAGPPGTGKTT 62
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
A+A+ +FG E Y+ +LE+NASD+R + +RTK+K FA R Y +K
Sbjct: 63 AAMALTKDVFGEE-YRRNLLEMNASDERKLESIRTKVKQFA--------RTSPYGGAQFK 113
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
II LDEAD++T DAQ ALRR ME Y++ RF CNY S+IIEP+ SRCA FRF+PLS+
Sbjct: 114 IIFLDEADALTNDAQGALRRIMEQYAETCRFILSCNYSSKIIEPIQSRCAVFRFRPLSDA 173
Query: 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+++++ H+ EG+ L+ +A L+ ISQGDLR+A+T LQ A+ + IT + S
Sbjct: 174 DVNAQIHHVAEIEGVKLEDDAGDALTRISQGDLRKALTGLQVASAI-NMHITRDLIYETS 232
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQ 336
PPE + CR F A + + ++ G + ++QL + + ++++ +
Sbjct: 233 ATAPPEALHQYLMACRDDGFHAARRRLRELLDRYGLAGTDFVNQLHRELYTADFLNEDAK 292
Query: 337 ARICKCLAEVDKCLVDGADEYLQL 360
+ + +AEV+ LV+G E +QL
Sbjct: 293 LDLTEWMAEVEYRLVEGGGEQIQL 316
>gi|432330756|ref|YP_007248899.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
gi|432137465|gb|AGB02392.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
Length = 322
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 193/316 (61%), Gaps = 12/316 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S W+EKYRP+++ D+ Q+E+V L++ + + N PH+LF G G GKTT A+ +A +
Sbjct: 3 ESHTIWIEKYRPQKLADIVGQDEIVERLSSYVRSGNLPHLLFTGSAGVGKTTAAVTLARE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
F + ++ ELNASD+RGI+VVR +IK FA R +KI+ LDEAD
Sbjct: 63 FF-RDSWQMNFRELNASDERGIDVVRNQIKQFA--------RTTPLGEATFKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T DAQ ALRRTME+Y++ RF CNY S+II+P+ SRCA +RFKPL E + V
Sbjct: 114 ALTTDAQAALRRTMESYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKPLGPEAVREEVRR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I + EGL + A+ + I+QGD+R+AI LQGAA + +I K + S++ PE +
Sbjct: 174 IASREGLTITDGAMDAIVYIAQGDMRKAINALQGAA-IINPAIDEKRVYSITSTARPEEI 232
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ L ++ +GDFD A + ++ E G + L++Q++ +++ E + E + R+ L
Sbjct: 233 DELLSLSLTGDFDGAESLLAQLLHERGIAPNELINQMYRALLKRE-MPRELKVRLIDHLG 291
Query: 345 EVDKCLVDGADEYLQL 360
E D L +GA+ +Q+
Sbjct: 292 ESDFRLSEGANSDIQM 307
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 184/316 (58%), Gaps = 11/316 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP ++ D+ E++ + +E PH+LFYGPPGTGKT+T LA+A +
Sbjct: 5 QIGLPWVEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLLFYGPPGTGKTSTILAVAKE 64
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+G + K VLELNASD RGI+VVR +I FA+ C +K+IILDE D
Sbjct: 65 LYGAKNLKKMVLELNASDARGIDVVRNEILNFAS--------SRSLHCKGFKVIILDECD 116
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQ ALRR ME ++K RF ICNY+ ++I + SRC +FRF PLS E M R+ H
Sbjct: 117 AMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINH 176
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ EEG+++D + L +++GD+RR++ LQ A+ L + +T + V+G +
Sbjct: 177 VVEEEGIDIDQNGMDLLLKMAEGDMRRSLNILQ-ASHLAFNKVTDDIVYKVTGRPRRNDI 235
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ + D + ++ E G + +L+ L++ + E D+ D +A I LA
Sbjct: 236 RRMMEWLLNQDIKYCMDSIEELMLENGIALNDVLTDLYEEICEA-DLPDIPKAEILSALA 294
Query: 345 EVDKCLVDGADEYLQL 360
+++ L GA E +QL
Sbjct: 295 DIEYRLNIGATEKIQL 310
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 185/311 (59%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRPK + +V Q+E+V L + ++ + PH+LF GP GTGKTT A+A+A +LFG
Sbjct: 5 WVEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFGDN 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++S ELNASD+RGI +VRTKIK +A A + +KII LDEAD++T D
Sbjct: 65 -WRSSFHELNASDERGIGIVRTKIKEYARTAAPND--------VGFKIIFLDEADALTPD 115
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME YS+ RF CNY S+IIEP+ SRCA FRF PL E + R+ +I E
Sbjct: 116 AQAALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKAEDIKKRLRYIAENE 175
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G + +AL + IS GD+R+AI LQ +A + +I + +G+ E VE +
Sbjct: 176 GKEITDDALDAIVYISSGDMRKAINILQMSAAI-SDTIDEGTVYKATGIAKREDVEEVVK 234
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A ++N ++ E G ++ Q+ V+ + I D + + E++
Sbjct: 235 KALGGDFISARNKLNKLLVELGLSGEDVIKQIHRVIYDLP-IDDRLKVELLDRTGEIEFR 293
Query: 350 LVDGADEYLQL 360
+V+GA+E +QL
Sbjct: 294 MVEGANERIQL 304
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 188/311 (60%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRPK + +V Q+E+V L + ++ PH+LF GP GTGKTT A+A+A +LFG E
Sbjct: 5 WVEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFG-E 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+++ ELNASD+RGI +VRTKIK +A A + +KII LDEAD++T D
Sbjct: 64 NWRASFHELNASDERGIGIVRTKIKEYARTAAPND--------VGFKIIFLDEADALTPD 115
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME YS+ RF CNY S+IIEP+ SRCA FRF PL E + R+ +I + E
Sbjct: 116 AQAALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKSEDIKKRLKYIADSE 175
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G + +AL+ + IS GD+R+AI LQ +A + +I + +G+ E VE +
Sbjct: 176 GKKITEDALNAIVYISGGDMRKAINILQMSAAI-SDTIDEGVVYKATGLAKREDVEDVLK 234
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+GDF A ++N ++ E G ++ Q+ V+ + I D + + E++
Sbjct: 235 KALAGDFIEARNKLNKLLVELGLSGEDVIKQIHRVIYDLP-IDDRLKVELLDKTGEIEFR 293
Query: 350 LVDGADEYLQL 360
+V+GA+E +QL
Sbjct: 294 IVEGANERIQL 304
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 183/313 (58%), Gaps = 13/313 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + +I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVADEIRNIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EE + L + L L + GD+R+AI LQ AA + G ++ + +++ PE + +
Sbjct: 184 EEDIELTEDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTM 242
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
GDF + ++ ++ EG ++ QL + E DI DE R+ + + E D
Sbjct: 243 VQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDEAAVRVLERIGETD 301
Query: 348 KCLVDGADEYLQL 360
+ GA+E +QL
Sbjct: 302 YRITRGANERVQL 314
>gi|50555415|ref|XP_505116.1| YALI0F07337p [Yarrowia lipolytica]
gi|49650986|emb|CAG77923.1| YALI0F07337p [Yarrowia lipolytica CLIB122]
Length = 333
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 181/323 (56%), Gaps = 11/323 (3%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
KRK P + PWVEKYRP + DV E V L + N P++L G PG GKTT
Sbjct: 9 KRKGEPEFE--LPWVEKYRPMYLDDVVGHTETVERLKIMAKDGNIPNLLISGLPGIGKTT 66
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
+ +A L GP+LYK VLELNASDDRGI VVR KIK FA Q++ P +K
Sbjct: 67 SVHCLARTLLGPQLYKDAVLELNASDDRGIEVVRGKIKNFA-------QKKVTMPPGKHK 119
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
IIILDEADSMT AQNAL+RTME YS TRF F CN ++IIE + SRCA RF LS E
Sbjct: 120 IIILDEADSMTAGAQNALKRTMELYSDTTRFAFACNQSNKIIEAIQSRCAILRFGRLSNE 179
Query: 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+ R+LHI E + + LS L ++GD+R+AI LQG FG + S ++ V
Sbjct: 180 QVLERLLHIVEAENVQCSDDGLSALIFSAEGDMRQAINNLQGTVSGFG-FVNSSNVWKVV 238
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
P VV+ + C G+ A + + + +GY A ++S +F V +T ++ + +
Sbjct: 239 DSPHPVVVKSMLDACSKGEVTEACESLKQLWTKGYSAQDIISTMFR-VTKTLEVPEALRL 297
Query: 338 RICKCLAEVDKCLVDGADEYLQL 360
K + +++G YLQL
Sbjct: 298 EYIKEIGFTHMRILEGITTYLQL 320
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 178/325 (54%), Gaps = 8/325 (2%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
KM S+ PWVEKYRP ++ ++ E++V+ LT +E PH+LFYGPPGTGKTTT
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPP 155
LA A Q++ P S VLELNASD+RGI+VVR I FA A + G P
Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTV---P 136
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY++ I+ + SRC +FRF PL
Sbjct: 137 FKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLD 196
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
++++ R+ +I E L + + L +S+GD+R I LQ A F + +
Sbjct: 197 QKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQC 256
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQ 335
+ P E+ E + + N + GY +++ L D V T DI DE
Sbjct: 257 IGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVF-TLDIPDEA 315
Query: 336 QARICKCLAEVDKCLVDGADEYLQL 360
+ I L EV++ L G QL
Sbjct: 316 MSAIITGLGEVEENLSTGCSNETQL 340
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 183/310 (59%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ + + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITSTARPEDIEEMVR 245
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V E D+ + + R+ + + E D
Sbjct: 246 AAIDGEFTTARKQLETLIVDTGMAGGDIIDQLHRSVWEF-DLGEREAVRLMERIGEADYR 304
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 305 ISEGANEQVQ 314
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 192/318 (60%), Gaps = 13/318 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E ++ L N +E + PH++F GP G GKT ++ AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHENIIPRLKNYVEQDDLPHIMFAGPAGVGKTASSQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++G + ++ LELNASD RGI+VVR +IK FA + G GY Y+II LD
Sbjct: 71 AREIYGDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYN---YRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+++ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
V I + EG+ + + + L + GD+R+AI LQ AA + G ++ + + +++ P
Sbjct: 181 VREIADTEGIAVTDDGVDALVYAADGDMRKAINGLQAAA-VMGETVDEETVFAITSTARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + +GDF A + +++ E G ++ QL E DI ++ R+ +
Sbjct: 240 EEVEAMVDHAIAGDFTAARAALEDLLMERGLAGGDVIDQLHRSAWEF-DIPEQATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQ 359
L EVD + +GA+E LQ
Sbjct: 299 RLGEVDYRITEGANERLQ 316
>gi|358056280|dbj|GAA97763.1| hypothetical protein E5Q_04442 [Mixia osmundae IAM 14324]
Length = 382
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 188/329 (57%), Gaps = 10/329 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L NCPH++ G PG GKTT+ LA+AH L G
Sbjct: 62 PWVEKYRPAVLDDIVGNEETIERLKVIARDGNCPHIIISGQPGIGKTTSILALAHALLG- 120
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IKTFA Q++ P +KIIILDEADSMT
Sbjct: 121 KAYKEGVLELNASDERGIDVVRNRIKTFA-------QKKVTLPAGRHKIIILDEADSMTP 173
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ LS++ + R++ IC+
Sbjct: 174 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYARLSDKQLLKRIVEICDM 233
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + +AL++L S GD+R+AI LQ FG ++S+ + V P V +
Sbjct: 234 EQVKYSDDALASLIFTSDGDMRQAINNLQSTYSGFG-FVSSEAVFKVCDQPHPVTVNKMI 292
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD D++ + + + +GY A +++ +F V T+ + + + K +
Sbjct: 293 EACAKGDIDVSMEMLEKLWHQGYSAVDIVTTIFRVTKSTDVLPEYTKLEFIKEIGFSHMR 352
Query: 350 LVDGADEYLQLLDVASNVIRAVCNMPEEF 378
+++G QL + + + R + + P+ F
Sbjct: 353 ILEGVSTLTQLSGLLARLCR-IYHSPQLF 380
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 182/310 (58%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIATAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ + + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITSTARPEDIEEMVR 245
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V E D+ + R+ + + E D
Sbjct: 246 AAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEF-DLDERDAVRLMERIGEADYR 304
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 305 ISEGANEQVQ 314
>gi|448304145|ref|ZP_21494089.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445591898|gb|ELY46094.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 329
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 190/319 (59%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A +I
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHENIVPRLQRYIEQDDLPHLMFAGPAGTGKTTAAQSI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF LSE+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSEDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ I EG+ + + + L + GD+R+AI LQ AA + G ++ + + +++ P
Sbjct: 181 IREIAEIEGITVTDDGIDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITSTARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ E G ++ QL E DI ++ R+ +
Sbjct: 240 EEVEAMVDHAIDGDFTAARAALEDLLMERGLAGGDVIDQLHRSAWEF-DIPEQATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 183/310 (59%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ + + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITSTARPEDIEEMVR 245
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V E D+ + + R+ + + E D
Sbjct: 246 AAIDGEFTTARKQLETLIVDTGMAGGDIIDQLHRSVWEF-DLDEREAVRLMERIGEADYR 304
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 305 ISEGANEQVQ 314
>gi|253745639|gb|EET01440.1| Replication factor C, sub 2 [Giardia intestinalis ATCC 50581]
Length = 351
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 177/295 (60%), Gaps = 22/295 (7%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW EK+RP + + HQ+ VR +E+ N PHML YGP GTGKTT A+ H+ F
Sbjct: 2 SAPWTEKHRPLALDRIVHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLVHAMMHEFF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEAD 165
GP +++RV E NAS DRGI +VR +IK+ A +AV + YPCP +++I+LDEAD
Sbjct: 62 GPRFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPEDVKALYPCPDFQVIVLDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T ++Q ALRR +E YS+ TRF +CNY S+II P+ SRCA+F F PL + ++ R+
Sbjct: 122 ALTRESQAALRRIIEDYSETTRFCILCNYPSQIIAPIVSRCARFAFSPLPQTLIIDRLTA 181
Query: 226 IC----------NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKD 272
IC NE+ L ++ALS ++ +SQGD+R AIT LQ + G ++ +
Sbjct: 182 ICYAEMHQLRNANEQLSLLASDALSEVAILSQGDMRAAITLLQTTVQFCQSMGEELSPEH 241
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEV-----NNIIAEGYPASLLLSQLF 322
+ ++G IP E++ L + D L + + ++I GYPA ++ +L+
Sbjct: 242 VRLLAGKIPDELIASLIE--KMTDVSLPVESLMEYLHKSVIRTGYPALDVIRELW 294
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 181/310 (58%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 69 WIEKYRPQTLDDIYGQEEIVERLCSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 128
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 129 -WRGNFLELNASDQRGIDVVRDRIKNFA---------RSSFGGHDYRIIFLDEADSLTND 178
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ + I E
Sbjct: 179 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAETE 238
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ L + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 239 EIELTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITSTARPEDIEKMVR 297
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V E D+ + R+ + + E D
Sbjct: 298 AAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEF-DLDERAAVRLMERIGETDYR 356
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 357 ISEGANEQVQ 366
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 185/311 (59%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP + +V QEE+ L +E + P++LF G G GKTT A AIA +++G E
Sbjct: 18 WVEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYG-E 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASDDRGI+VVR +IK FA + G GY Y+II LDEADS+T D
Sbjct: 77 DWRDNFLELNASDDRGIDVVRGRIKEFARASFG------GYS---YRIIFLDEADSLTSD 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF P+S+ + R+ I + E
Sbjct: 128 AQSALRRTMEQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGERIREIAHIE 187
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + + L + GD+RRA+ LQ AA + G ++ + + +++ PE +E +
Sbjct: 188 GIEITDGGVEALVYAADGDMRRAVNSLQAAA-VMGETVDEEVVYTITATARPEEIEAMVT 246
Query: 291 VCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A ++++++ +G ++ QL V + +SD + R + E D
Sbjct: 247 SALEGDFTTARATLDDLLSNKGLSGGDIIDQLHRSVWDL-GLSDREAVRTLDRIGETDYR 305
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 306 ITEGANERIQL 316
>gi|386783685|gb|AFJ24737.1| replication factor C subunit 2, partial [Schmidtea mediterranea]
Length = 341
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/321 (40%), Positives = 187/321 (58%), Gaps = 9/321 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP + D+ E ++ L + N P+++ GPPG+GKTT+ L +A + G
Sbjct: 23 PWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK+ VLELNAS+DRGI VVR KIK+FA + + P +KIIILDE DSMTE
Sbjct: 82 ETYKNAVLELNASNDRGIEVVRNKIKSFA-------RNKVNLPDGMHKIIILDEGDSMTE 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEP+ SRCA R+ LS+ + +R+L I
Sbjct: 135 GAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKM 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L + +QGD+R+AI ++ + FG S+TS+++ V P +++ +
Sbjct: 195 ESVIYTDDGLEAIIFTAQGDMRQAINNVELTHKGFG-SVTSENVFKVCDEPHPLLIKSML 253
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C F+ A K +NN++A GY ++ +F V + I + + R K + EV
Sbjct: 254 ENCVESKFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMR 313
Query: 350 LVDGADEYLQLLDVASNVIRA 370
+VDG +LQL + + RA
Sbjct: 314 IVDGLTTHLQLAGLIGRLCRA 334
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 180/310 (58%), Gaps = 12/310 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GKTT+A AIA L+G +
Sbjct: 19 WIEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLYGDD 78
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R P Y II LDEADS+T D
Sbjct: 79 -WRGNFLELNASDERGIDVVRDRIKNFA--------RSSFNPERGYTIIFLDEADSLTND 129
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ + I E
Sbjct: 130 AQSALRRTMEEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQTRDIAEAE 189
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ L L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 190 GIELTEGGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYLITSTARPEDIEKMVR 248
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V + D+ + + + + E D
Sbjct: 249 AAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWDF-DLDERDAVHLMERIGEADYR 307
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 308 ISEGANEQVQ 317
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 182/310 (58%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ + + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITSTARPEDIEEMVR 245
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V E D+ + R+ + + E D
Sbjct: 246 AAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEF-DLDERDAVRLMERIGEADYR 304
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 305 ISEGANEQVQ 314
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 183/319 (57%), Gaps = 14/319 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL +E + +R+ +I +
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL + +QGD+RRAI LQ AA G IT + + G++ P ++
Sbjct: 176 EGVKITDDALEAIYEFTQGDMRRAINALQIAATT-GKEITEETVAKALGMVSPRLLRETL 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G+F A ++ + +G L ++ QL ++ D+ + + I +AE
Sbjct: 235 NDAFRGNFGKAATQIYGFVVDGGIGELEIVKQLHREALKL-DVPEYLKPEIAYIIAEAHY 293
Query: 349 CLVDGADEYLQLLDVASNV 367
++ GA Q+ + +
Sbjct: 294 AILRGAHGLTQIYGALAKI 312
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 197/329 (59%), Gaps = 11/329 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 5 PTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ P + S VLE+NASDDRGI +VR +I +FA + G+ R G +K+IILD
Sbjct: 65 ARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFA--STGTMYRSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PLS + + R
Sbjct: 117 EADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPR 176
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ I EE LN+ + L ++S GD+R+ + LQ + F S++T +++ S G P
Sbjct: 177 LDTIIKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAF-SAVTEENVYSCVGHPLP 235
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
++ + + ++L ++ +I + +G +L++L V + E D +
Sbjct: 236 IDIKNIINWLLNESYELCYCKIQDIKLKKGLALQDILTELHLFVNKIE-FPDSILIDLVI 294
Query: 342 CLAEVDKCLVDGADEYLQLLDVASNVIRA 370
LAE++K + G E +QL + S RA
Sbjct: 295 KLAEIEKRVSIGCSEAVQLNALVSAFQRA 323
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 197/329 (59%), Gaps = 11/329 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 5 PTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ P + S VLE+NASDDRGI +VR +I +FA + G+ R G +K+IILD
Sbjct: 65 ARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFA--STGTMYRSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PLS + + R
Sbjct: 117 EADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPR 176
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ I EE LN+ + L ++S GD+R+ + LQ + F S++T +++ S G P
Sbjct: 177 LDAIIKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAF-SAVTEENVYSCVGHPLP 235
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
++ + + ++L ++ +I + +G +L++L V + E D +
Sbjct: 236 IDIKNIINWLLNESYELCYCKIQDIKLKKGLALQDILTELHLFVNKIE-FPDSVLIDLVI 294
Query: 342 CLAEVDKCLVDGADEYLQLLDVASNVIRA 370
LAE++K + G E +QL + S RA
Sbjct: 295 KLAEIEKRVSIGCSEAVQLNALVSAFQRA 323
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 181/310 (58%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ + + L L + GD+RRAI LQ AA G + + ++ PE +E +
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEDAVYMITSTARPEDIEEMVR 245
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V E D+ + R+ + + E D
Sbjct: 246 AAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEF-DLDERDAVRLMERIGEADYR 304
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 305 ISEGANEQVQ 314
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 190/319 (59%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAVEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ I EEG+ + + + L + GD+R+AI LQ AA + G + + + +++ P
Sbjct: 181 IREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAA-VMGEVVDEETVFAITSTARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ E G ++ QL + DI ++ R+ +
Sbjct: 240 EEVEAMVDRAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWQF-DIPEKATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 183/311 (58%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G E
Sbjct: 98 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG-E 156
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA + G + Y+II LDEAD++T D
Sbjct: 157 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVE---------YRIIFLDEADALTSD 207
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + +I EE
Sbjct: 208 AQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEE 267
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ L + L L + GD+R+AI LQ AA + G ++ + +++ PE + +
Sbjct: 268 DIELTEDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQ 326
Query: 291 VCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF + ++ ++ EG ++ QL + E DI DE R+ + + E D
Sbjct: 327 SALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDEAAVRVLERIGETDYR 385
Query: 350 LVDGADEYLQL 360
+ GA+E +QL
Sbjct: 386 ITRGANERVQL 396
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 182/310 (58%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ + + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITSTARPEDIEEMVR 245
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V E D+ + R+ + + E D
Sbjct: 246 AAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEF-DLDERDAVRLMERIGEADYR 304
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 305 ISEGANEQVQ 314
>gi|158285610|ref|XP_308395.4| AGAP007477-PA [Anopheles gambiae str. PEST]
gi|157020075|gb|EAA04621.4| AGAP007477-PA [Anopheles gambiae str. PEST]
Length = 341
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/341 (39%), Positives = 195/341 (57%), Gaps = 18/341 (5%)
Query: 21 QKFSTTQSSP-EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
++ ++T S+P E E K+K S PW+EKYRP++ +++ EE V L
Sbjct: 3 EEVASTSSAPGAPKEAEGKKK-------SLPWIEKYRPQRFEEIVGNEETVARLGIFASQ 55
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
N P+++ GPPG GKTTT L +A L GP ++ VLELNAS++RGI+VVR+KIK FA
Sbjct: 56 GNAPNIIIAGPPGVGKTTTILCLARILLGPN-FREAVLELNASNERGIDVVRSKIKMFA- 113
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
Q++ P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +II
Sbjct: 114 ------QQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACNTSEKII 167
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EP+ SRCA RF LS+ + ++V+ IC E L+ D + L + +QGD+R+A+ LQ
Sbjct: 168 EPIQSRCAMLRFSKLSDAQVLAKVVEICQHENLSYDEDGLEAIVFTAQGDMRQALNNLQS 227
Query: 260 AARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319
A FG I+ ++ V P +V+ + C GD A K ++ + GY A ++
Sbjct: 228 TANGFG-HISGANVFKVCDEPHPLLVQDMLQHCVKGDIHKAYKIMSKLWKLGYAAEDIIG 286
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+F V D++++ + + + E +VDG + LQ+
Sbjct: 287 NVFRVCRRM-DMNEKLKLYFIREIGETHMKIVDGLNSLLQM 326
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 183/313 (58%), Gaps = 13/313 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + +I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EE + L + L L + GD+R+AI LQ AA + G ++ + +++ PE + +
Sbjct: 184 EEDIELTEDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTM 242
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
GDF + ++ ++ EG ++ QL + E DI D+ R+ + + E D
Sbjct: 243 VQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIGDDAAVRVLERIGETD 301
Query: 348 KCLVDGADEYLQL 360
+ GA+E +QL
Sbjct: 302 YRITRGANERVQL 314
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 183/310 (59%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ + + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITSTARPEDIEEMVR 245
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A K++ +I + G ++ QL V E D+ + + R+ + + E D
Sbjct: 246 NAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEF-DLDEREAVRLMERIGEADYR 304
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 305 ISEGANEQVQ 314
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 13/313 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EE + L + L L + GD+R+AI LQ AA + G ++ + +++ PE + +
Sbjct: 184 EEDIELTEDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTM 242
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
GDF + ++ ++ EG ++ QL + E DI DE R+ + + E D
Sbjct: 243 VQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDEAAVRVLERIGETD 301
Query: 348 KCLVDGADEYLQL 360
+ GA+E +QL
Sbjct: 302 YRITRGANERVQL 314
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 190/317 (59%), Gaps = 15/317 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP+++ D+ E+++ + ++ PH+LFYGPPGTGKT+T LA A Q+
Sbjct: 8 SNLPWVEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLLFYGPPGTGKTSTILACAQQI 67
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEA 164
+ P+ + S+VLELNASDDRGI +VR +I +FA+ +G +K+I+LDEA
Sbjct: 68 YSPKEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTG----------FKLIVLDEA 117
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT DAQNALRR +E +++ RF ICNY+S+II L SRC +FRF PLS MS R+
Sbjct: 118 DAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSTAQMSPRID 177
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
H+ +E L + A+ L ++QGD+R+A+ LQ + F S + ++ G E
Sbjct: 178 HVITQERLTVTADGKKALMDLAQGDMRKALNILQSTSMAF-SEVNETNVYLCVGQPLKED 236
Query: 285 VEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+ + + + DF ++ + + +G +L+Q+ + V ++ D+ + R+ +
Sbjct: 237 ISDIVSTLLNEDFTYCYSHISKLKVGKGLALQDVLTQV-HLYVHRIELPDQVKMRLIDKM 295
Query: 344 AEVDKCLVDGADEYLQL 360
AE++ L G E +QL
Sbjct: 296 AEIEYRLAAGTSEKIQL 312
>gi|448123321|ref|XP_004204663.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|448125599|ref|XP_004205221.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358249854|emb|CCE72920.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358350202|emb|CCE73481.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
Length = 327
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 183/321 (57%), Gaps = 11/321 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ EE V L N PHM+ G PG GKTT+ +A++L GP
Sbjct: 12 PWVEKYRPKKLDDIVGNEETVERLKLIALDGNMPHMILSGLPGIGKTTSIHCLAYELLGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELY +ELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 72 ELYHQATMELNASDDRGIDVVRNKIKQFA-------QTKIQLPAGRHKIIILDEADSMTP 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ LS+E + R+L I
Sbjct: 125 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEQVLQRLLEITKL 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + ++E L L ++GD+R+AI LQ FG + ++ + P ++ +
Sbjct: 185 EDVKYNSEGLQALIFTAEGDMRQAINNLQSTVAGFG-FVNDVNVFKIVDQPHPLIIRKIL 243
Query: 290 AVCRSGD---FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ C S D D A + ++++ +GY A +++ F V I+++++ + K +
Sbjct: 244 SYCCSKDGQGVDNALQLLDSLWDKGYSAIDIVTSTFKVAKTLPGINEQKRLDMIKEIGFA 303
Query: 347 DKCLVDGADEYLQLLDVASNV 367
+++G YLQL + S +
Sbjct: 304 HMRILEGVSTYLQLCGLYSKL 324
>gi|308159615|gb|EFO62141.1| Replication factor C, sub 2 [Giardia lamblia P15]
Length = 351
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 176/295 (59%), Gaps = 22/295 (7%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW EK+RP + V HQ+ VR +E+ N PHML YGP GTGKTT A+ H+ F
Sbjct: 2 SAPWTEKHRPMSLDRVMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEAD 165
GP +++RV E NAS DRGI +VR +IK+ A +AV + YPCP +++IILDEAD
Sbjct: 62 GPRFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T ++Q ALRR +E +S+ TRF ICNY S+II P+ SRCA+F F L + ++ R+
Sbjct: 122 ALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPQSLIIDRLEA 181
Query: 226 IC----------NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKD 272
IC NE+ + +EAL ++++SQGD+R AIT LQ + G ++ K
Sbjct: 182 ICYAEMHQLRNANEKLSSSASEALGEVATLSQGDMRAAITLLQATVQFCQNMGEELSPKH 241
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEV-----NNIIAEGYPASLLLSQLF 322
+ ++G IP E++ L + D L + + ++I GYPA ++ +L+
Sbjct: 242 VYLLAGKIPDELIASLIE--KMTDVSLPVESLMEYLHKSVIRIGYPALDVIRELW 294
>gi|440297885|gb|ELP90526.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 328
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 188/315 (59%), Gaps = 13/315 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
++ S PWVEKYRP + V E ++ L + PH+LFYGPPGTGKTTTALAI
Sbjct: 3 VEPSLPWVEKYRPTTISGVQGHEYILESLQQFISANQLPHLLFYGPPGTGKTTTALAIVK 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
Q+ GP+ Y + VLELNASD+RGINVVR +IK+FA+ R C K I+LDE+
Sbjct: 63 QICGPK-YTALVLELNASDERGINVVREQIKSFAST------RTLYTNCT--KFIVLDES 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D +T+DAQNALRRT+E YS RF FICN ++ I + SRCAKFRF PLS E + +
Sbjct: 114 DKLTKDAQNALRRTLEQYSGNCRFVFICNEVNLITPAIQSRCAKFRFGPLSPEALKKIMK 173
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
HI +EE + +D +A +L IS+GD R I LQ A + + I+++ L ++ G+ P+
Sbjct: 174 HITDEEKMVVDEDAQQSLIDISKGDARTIINTLQ-ALSMTCNQISNETLFAMVGLPTPQQ 232
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET---EDISDEQQARICK 341
+ +F S DF A K + ++I G + +++++ +V+ E I + +
Sbjct: 233 ITNIFVQMLSSDFIGAYKAIEDLIVGGLSLNDIINRVVPKLVDIKVREGIDKNARIKCVT 292
Query: 342 CLAEVDKCLVDGADE 356
LA +++ L G +E
Sbjct: 293 ALATIERNLSVGGNE 307
>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
Length = 322
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 189/311 (60%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+++++V+ QE ++R L + ++ N PH++F GP G GKT A+A+A + + +
Sbjct: 7 WTEKYRPRKLEEVSGQEAIIRNLQSYVKKRNLPHLIFSGPAGVGKTAAAVAMAREFY-DD 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ ELNASD+RGI VVR IK FA + +G +KII LDEAD++T+
Sbjct: 66 TWAENFTELNASDERGIEVVRNTIKNFARTMPIGDA---------AFKIIFLDEADALTD 116
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRRTME YS RF CNY S+IIEP+ SRC+ +RFK LS + ++SR +I +
Sbjct: 117 AAQSALRRTMERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLSYDAIASRAKYIADT 176
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EGL L +AL ++ +S GD+RRAI LQ A+ + + I + + ++ P+ +E L
Sbjct: 177 EGLTLSEDALRAINYVSMGDMRRAINALQSAS-VLSNEIKPEMIYEITATARPDEIEALI 235
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+G+F A ++ +I +G +L+Q+ + ++ DIS Q+ + + E D
Sbjct: 236 ETAMAGEFLDALDKLGVLIDKGISGDEILAQMHRLAIKM-DISARQKVELMDRIGETDYR 294
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 295 ITEGANERIQL 305
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 189/312 (60%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ +E++ + + L+ PH+LFYGPPGTGKT+T LA A +F P
Sbjct: 6 PWVEKYRPKNLDDLISHKEIINTIQHFLKEDRLPHLLFYGPPGTGKTSTILACAKTIFSP 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
KS VLELNASDDRGI+VVR I++FA+ S R G +K+IILDEAD+MT+
Sbjct: 66 AEIKSMVLELNASDDRGIDVVRGPIQSFASTR--SIFRSG------FKLIILDEADAMTK 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +ETY+ RF ICNY+S+II L SRC +FRF PLS E MS R+ HI E
Sbjct: 118 DAQNALRRVIETYTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLSMEQMSVRLQHIIRE 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +N+ + ++ ++QGD+RR++ LQ + + ++ + + +G PE ++ +
Sbjct: 178 ENINITDSGMDSVVKLAQGDMRRSLNILQSTSMAY-DTVDQRTVYLCTGQPLPEDIKQIV 236
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
DF A +++ + I +G +++++ +V D + + + ++ ++
Sbjct: 237 EWMLGEDFMTAYQKIIELKIEKGLALHDIITEIHHLVHRI-DFPAKVRLALLDKMSNIEY 295
Query: 349 CLVDGADEYLQL 360
+ G E +QL
Sbjct: 296 NVSTGTSERIQL 307
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 182/319 (57%), Gaps = 14/319 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL +E + +R+ +I +
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL + +QGD+RRAI LQ AA G IT + + G++ P ++
Sbjct: 176 EGVKISDDALEAIYEFTQGDMRRAINALQIAATT-GKEITEETVAKALGMVSPRLLRETL 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G+F A ++ + +G L ++ QL ++ D+ + + I +AE
Sbjct: 235 NDAFRGNFGKAATQIYGFVVDGGIGELEIVKQLHREALKL-DVPEYLKPEIAYIIAEAHY 293
Query: 349 CLVDGADEYLQLLDVASNV 367
++ GA Q+ + +
Sbjct: 294 AILRGAHGLTQIYGALAKI 312
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 183/313 (58%), Gaps = 13/313 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + +I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
+E + L + L L + GD+R+AI LQ AA + G ++ + +++ PE + +
Sbjct: 184 QEDIELTEDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTM 242
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
GDF + ++ ++ EG ++ QL + E DI DE R+ + + E D
Sbjct: 243 VQSALDGDFTASRATLDRLLTEEGIAGGDVIDQLHRSIWEF-DIDDEAAVRVLERIGETD 301
Query: 348 KCLVDGADEYLQL 360
+ GA+E +QL
Sbjct: 302 YRITRGANERVQL 314
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 188/319 (58%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+ + D+ ++V L N +E + PH+LF GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTENAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
V I E +++ + + L + GD+R+AI LQ AA + G ++ + + +++ P
Sbjct: 181 VREIAANEEIDVTDDGVDALVFAADGDMRKAINGLQAAA-VMGETVDEETVFAITATARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ E G ++ QL E DI + R+ +
Sbjct: 240 EEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEF-DIPERATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|320163905|gb|EFW40804.1| DNA replication factor C subunit Rfc4 [Capsaspora owczarzaki ATCC
30864]
Length = 366
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/279 (44%), Positives = 167/279 (59%), Gaps = 9/279 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
QS PWVEKYRP +KDV E+ V L E N P+++ G PGTGKTT+ L +AHQ
Sbjct: 48 QSEMPWVEKYRPILLKDVVGNEDTVARLQIIAEEGNMPNIIIAGQPGTGKTTSILCLAHQ 107
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L GP YK+ VLELNASDDRGI+VVR IK FA Q++ P K+IILDEAD
Sbjct: 108 LLGPA-YKNAVLELNASDDRGIDVVRNDIKMFA-------QKKVTLPPGRQKVIILDEAD 159
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ L++E + R+L
Sbjct: 160 SMTEAAQQALRRTMEIYSATTRFALACNMSDKIIEPIQSRCAILRYTRLTDEQILKRLLE 219
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
IC+ E + E L+ L +QGD+R+A+ LQ FG + ++ + P +V
Sbjct: 220 ICDAEKVPRTEEGLTALIFTAQGDMRQAVNNLQSTFSGFG-FVNLDNVFKICDQPHPLIV 278
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
+ + C+ G+ D A ++ ++ A GY ++S +F V
Sbjct: 279 QKILEACKVGNIDEAYAQLESLWALGYSPLDIISTIFRV 317
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 184/319 (57%), Gaps = 14/319 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ + PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR FRF PL +E + +R+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEAVFTRLRYIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL T+ +QGD+RRAI LQ AA + +T + + G++ P ++
Sbjct: 176 EGVKISDDALETIYEFTQGDMRRAINALQIAASV-DKEVTEEVVARALGMVSPRLLREAL 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G F A ++ + +G L ++ Q+ V+ D+ + + + +AE
Sbjct: 235 HEAVKGSFGKAATQIYGFVVDGGVGELEIIKQIHREVLRL-DVPEYVKPELAYIIAEAHY 293
Query: 349 CLVDGADEYLQLLDVASNV 367
++ GA Q+ + V
Sbjct: 294 AILRGAHGLTQIYGALAKV 312
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 189/319 (59%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A AI
Sbjct: 11 PTPGRTEVWIEKYRPERLDEIKGHENIVPRLQRYVERDDLPHLMFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
V I EG+ + + + L + GD+R+AI LQ AA + G ++ + + +++ P
Sbjct: 181 VREIAENEGIEVTDDGVDALVYAADGDMRKAINGLQAAA-VMGETVDEETVFAITATARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ E G ++ QL E DI + R+ +
Sbjct: 240 EEVEEMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEF-DIPELATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 184/321 (57%), Gaps = 14/321 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+S IIEP+ SR RF PL +E + +R+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL + +QGD+RRAI LQ AA + ++T + + G++ P ++
Sbjct: 176 EGVKVSDDALEAIYEFTQGDMRRAINALQIAATV-SKAVTEEVVAKALGMVSPRLLRETL 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G F A ++ +A+G L ++ Q+ ++ D+ + + I +AE
Sbjct: 235 YEAVKGSFGKAATQIYGFVADGGVGELEIIKQIHREMLRL-DVQEYVKPEIAYIIAEAHY 293
Query: 349 CLVDGADEYLQLLDVASNVIR 369
++ GA Q+ + V R
Sbjct: 294 AILRGAHGLTQIYGALAKVRR 314
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 187/310 (60%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+++ VA ++V L + + + PH+LF GP G GKTT+A+AIA +++G +
Sbjct: 13 WIEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGPAGVGKTTSAMAIAREVYGDD 72
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA + G GY Y+II LDEAD++T D
Sbjct: 73 -WRENFLELNASDERGIDVVRDRIKNFARASFG------GYD---YRIIFLDEADALTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME ++ TRF CNY ++II+P+ SRCA FRF PL + ++ V I EE
Sbjct: 123 AQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAEYVRRIAEEE 182
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + + + L + GD+R+AI LQ AA G ++ + + +++ + PE +E +
Sbjct: 183 GIEITEDGIDALVYAADGDMRKAINGLQAAATT-GETVDEEAVYAITAAVRPEQIETMVT 241
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A ++++++ E G ++ QL + D+ D R+ + + E D
Sbjct: 242 TALDGDFTAARAKLDDLLTEAGLGGGDVIDQLHRSAW-SFDLDDRATVRLLERVGETDYR 300
Query: 350 LVDGADEYLQ 359
+ GA+E LQ
Sbjct: 301 ISQGANERLQ 310
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 188/313 (60%), Gaps = 13/313 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVE++RP ++ D+ QE V L + + PH+LFYGPPG GKTT ALA+A +L+G +
Sbjct: 9 WVERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYG-D 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++S VLELNASD+RGI+V+R K+K FA + +G P P +K++ILDEAD+MT D
Sbjct: 68 SWRSSVLELNASDERGIDVIREKVKEFAR-TIPTG------PVP-FKLVILDEADNMTSD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF + NYIS IIEP+ SRCA FRF PL +E + R+ I E
Sbjct: 120 AQQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKET 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + + L + +SQGD+R+AI LQ + + + V G + +VV+
Sbjct: 180 GVEVTEDGLEAIWEVSQGDMRKAINTLQ-TTTTTNKKVDREAVYRVVGRVEFKVVDEFIE 238
Query: 291 VCRSGDFDLANKEVNNII-AEGYPASLLLSQLFD--VVVETEDISDEQQARICKCLAEVD 347
SG F+ + K + NI+ G LL + D ++ + + + + + + +A++D
Sbjct: 239 SALSGRFEDSRKLLRNIMYTYGVSGVELLKYIEDELLINDKFKLPVDAKVEVSELVADID 298
Query: 348 KCLVDGADEYLQL 360
LV G+DE +QL
Sbjct: 299 NRLVTGSDEEIQL 311
>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
Length = 340
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 186/326 (57%), Gaps = 15/326 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++KD+ E V L E N P+++ GPPGTGKTT+ L +AH+L GP
Sbjct: 23 PWVEKYRPTRIKDIVGNVEAVSRLQIIAEEGNMPNIILAGPPGTGKTTSILCLAHELLGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 83 N-FREAVLELNASDDRGIDVVRNKIKMFA-------QQKVTLPLGRHKIVILDEADSMTS 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ LS++ + R+LH+C E
Sbjct: 135 GAQQALRRTMEIYSSTTRFALACNQSSKIIEPIQSRCAIVRYSKLSDKELLQRLLHVCQE 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD-LISVSGVIPPEVVEGL 288
EG+ + L + + GD+R+A+ +Q A FG + S+D + V P +V +
Sbjct: 195 EGVAHTPDGLEAVVFTADGDMRQALNNVQATANGFG--LVSQDHVFRVCDQPHPVLVSSV 252
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
C D A + + + GY AS +++ LF VV +++ + K +
Sbjct: 253 VRHCLDARIDDAYEGLRALCDMGYSASDIITILFRVVRNFTGMNEYLKLEYIKQIGFCHM 312
Query: 349 CLVDGADEYLQLLDVASNVIRAVCNM 374
+ DG + LQL S ++ +C +
Sbjct: 313 RVGDGVNSRLQL----SGLLAELCKL 334
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 190/314 (60%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V +E+++ L N +E + PH+LF G PG GKTT AL +A L+G
Sbjct: 3 KPWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+K LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -NTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E +N++ + + +S+GD+R+AI LQ A + +I + V+ P+ ++
Sbjct: 173 EKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAAV-SKNINETVIYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F A +++ ++ + G ++ Q+F V E IS++++ + + + E
Sbjct: 232 MTELALNGKFVEAREQLYKLMIDWGMSGEDIIIQIFREVPNLE-ISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+GA+E +QL
Sbjct: 291 DFRIVEGANERIQL 304
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 189/319 (59%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E P+++F GP GTGKTT A+ I
Sbjct: 11 PTPGRTEVWIEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAAVGI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++G + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREIYGDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
V I EG+ + + + L + GD+R+AI LQ AA + G ++ + + +++ P
Sbjct: 181 VREIAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAA-VMGETVDEETVFAITATARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ E G ++ QL E DI + R+ +
Sbjct: 240 EEVEKMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEF-DIPEMATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 182/313 (58%), Gaps = 13/313 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EE + L + L L + GD+R+AI LQ AA + G ++ + +++ PE + +
Sbjct: 184 EEDIELTEDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTM 242
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
GDF + ++ ++ EG ++ QL + E DI D+ R+ + + E D
Sbjct: 243 VQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDDAAVRVLERIGETD 301
Query: 348 KCLVDGADEYLQL 360
+ GA+E +QL
Sbjct: 302 YRITRGANERVQL 314
>gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
gi|110287812|sp|Q2FQT9.1|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
Length = 323
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 189/311 (60%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ ++D+ Q+E++ L + + PH+LF G GTGKTT A+A+A + FG E
Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFG-E 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ ELNASD+RGI+VVR +IK FA R + +KI+ LDEAD++T D
Sbjct: 67 DWQMNFRELNASDERGIDVVRNQIKQFA--------RTSPFGGSTFKILFLDEADALTTD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTMETY++ RF CNY ++II+P+ SRCA +RF+PL + +S V I ++
Sbjct: 119 AQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQ 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
L + E + + ++QGD+R+AI LQGAA + G I+ + +++ PE ++ L
Sbjct: 179 NLTVTEEVIDAIFYVAQGDMRKAINALQGAA-ILGRDISPDMIFAITATARPEEIDDLID 237
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ +G+F A + ++ + G L+SQL+ VV+ D+ + + R+ L E D
Sbjct: 238 LSLAGNFLGAGSSLQALLHDRGIAPQELISQLYRAVVK-RDLPEAVKVRLIDSLGETDFR 296
Query: 350 LVDGADEYLQL 360
L +GA +Q+
Sbjct: 297 LSEGAGSDIQM 307
>gi|388582885|gb|EIM23188.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 180/325 (55%), Gaps = 12/325 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++ V+ L + N PHM+ G PG GKTT LA+AH L GP
Sbjct: 10 PWVEKYRPRVLSDIVGNQDTVKRLEVIAQDGNMPHMIMSGTPGIGKTTAVLALAHTLLGP 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+++K VLELNASD+RGI+VVR +IK+FA Q++ P +KI+ILDEADSMT
Sbjct: 70 DVFKEAVLELNASDERGIDVVRNRIKSFA-------QKKIALPPGRHKIVILDEADSMTS 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA RF L + + R+ I +
Sbjct: 123 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPIQSRCAILRFSKLRDIELLQRLRQIAEK 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++ E L S+GD+R+A+ LQ G +T + V P +V+ L
Sbjct: 183 ENADVTDEGYEALIFTSEGDMRQAVNNLQSTHTGLG-LVTPDAVFKVCDQPHPLLVQNLL 241
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C D + A +++ + GY A ++ LF V T+ + + + K +
Sbjct: 242 ESCHKADIEDALSKLDELWTHGYAAIDIIQTLFRVARNTQSLEESLKLEYIKEIGWTHMR 301
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM 374
+++G +QL S ++ +C M
Sbjct: 302 ILEGVATIVQL----SGLVARLCKM 322
>gi|449550911|gb|EMD41875.1| hypothetical protein CERSUDRAFT_102269 [Ceriporiopsis subvermispora
B]
Length = 346
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 188/331 (56%), Gaps = 12/331 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ DV E + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 25 PWVEKYRPQKLDDVVGNTETIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIKTFA Q++ P KI+ILDEADSMT
Sbjct: 84 DAYKEGVLELNASDERGIDVVRNKIKTFA-------QKKVTLPPGRQKIVILDEADSMTS 136
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+ L + + R+L IC
Sbjct: 137 GAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYTKLRDTEVLQRLLEICQA 196
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L ++GD+R+AI LQ FG ++ ++ V P VV+ +
Sbjct: 197 EQVKYNDDGLTALIFTAEGDMRQAINNLQSTHSGFG-FVSGDNVFKVCDQPHPIVVQAMI 255
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A +++N + +GY A ++ +F VV ++I + + K +
Sbjct: 256 GACLKGNIDGAMEKLNELWDQGYSAVDIVVTIFRVVKTYDEIPEYTKLEYIKEIGFTHMR 315
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
+++G +QL + S + + NM PE F+
Sbjct: 316 ILEGVGTLVQLGGLMSRLCKM--NMKPELFR 344
>gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 341
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 187/333 (56%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 21 PWVEKYRPTVLDDVVGNSDTIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQLLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASDDRGI+VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 80 DAYKEGVLELNASDDRGIDVVRNKIKTFA-------QKKVTLPPGRHKIIILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC
Sbjct: 133 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEM 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L S+GD+R+AI LQ FG ++ ++ V P +V+
Sbjct: 193 EKVEYNDDGLTALIFTSEGDMRQAINNLQSTYSGFG-FVSGDNVFKVCDQPHPIIVQATI 251
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD D A ++VN + +GY A ++ +F VV +++ + + K +
Sbjct: 252 RACLKGDIDGAIEKVNQLWEQGYSAVDIVVTIFRVVKIFDEMPEYTKLEYIKEIGFTHMR 311
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL + ++ +C M PE F+
Sbjct: 312 ILEGVGTLIQL----AGLVARLCKMNSKPELFK 340
>gi|407847432|gb|EKG03143.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 183/314 (58%), Gaps = 8/314 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A+ L
Sbjct: 16 STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP----YKIIILD 162
FG + ++ VLE+NASDDRGI+VVR +++ FA+ S P P +K++ILD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFAST---SSFYFASTPAAPTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD M+ DAQ ALRR +E Y+K RF +CN+I++II L SRC +FRF P+ + M SR
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSR 192
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ + EEG+ E L +S GDLRR + LQ +A + IT + + V+G P
Sbjct: 193 LKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASA-MSAGEITEESVYRVTGNPTP 251
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
V G+ + DF + ++V+ I++E +S L + +V D+ E + +
Sbjct: 252 ADVRGIVEDMIAHDFAASWEKVHQIVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMK 311
Query: 343 LAEVDKCLVDGADE 356
LA+V+ GA E
Sbjct: 312 LADVEYYAAGGAKE 325
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 182/313 (58%), Gaps = 13/313 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 34 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA + G Y+II LDEAD++T
Sbjct: 94 DD-WREHFLELNASDERGIDVVRDRIKNFARTSFGG---------VEYRIIFLDEADALT 143
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + I
Sbjct: 144 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAA 203
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EE + L + L L + GD+R+AI LQ AA + G ++ + +++ PE + +
Sbjct: 204 EEDIELTEDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTM 262
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
GDF + ++ ++ EG ++ QL + E DI D+ R+ + + E D
Sbjct: 263 VQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDDAAVRVLERIGETD 321
Query: 348 KCLVDGADEYLQL 360
+ GA+E +QL
Sbjct: 322 YRITRGANERVQL 334
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 185/310 (59%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV E +V L + + + PH+LF GP G GKTT+++AIA +++G +
Sbjct: 15 WIEKYRPETLADVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSSMAIAREVYGDD 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA + G GY Y+II LDEAD++T D
Sbjct: 75 -WRENFLELNASDERGIDVVRDRIKDFARTSFG------GYD---YRIIFLDEADALTSD 124
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME ++ TRF CNY S+II+P+ SRCA FRF PL+EE + + + E
Sbjct: 125 AQSALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYIRRVAENE 184
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + + + L + GD+R+A+ LQ AA + G ++ + + ++ PE +E +
Sbjct: 185 GIEVTDDGVDALVYAADGDMRKALNGLQAAATMEG-AVDDEAVYGITATARPEEIEAMVE 243
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A ++++++ + G ++ QL + D+ D R+ + + E D
Sbjct: 244 RALDGDFTAARAKLDDLLTDAGLGGGDVIDQLHRSAWDF-DLDDAATVRLLERVGETDYR 302
Query: 350 LVDGADEYLQ 359
+ GA+E LQ
Sbjct: 303 ITQGANERLQ 312
>gi|371944797|gb|AEX62619.1| putative replication factor C small subunit [Moumouvirus Monve]
Length = 369
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 195/346 (56%), Gaps = 32/346 (9%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++D+A E ++++ N+ H LFYGPPGTGKT+ LA+ ++F
Sbjct: 7 SVPWIEKYRPRRLQDIAQSENLIKLFKNSTSKGEMTHFLFYGPPGTGKTSAILAMGREIF 66
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E + +RV+E NASDDRGIN VR KI A V S G P YKIIILDEADSM
Sbjct: 67 -KEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTTIPSYKIIILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK L +E M +++ I
Sbjct: 126 TDEAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAIYFKKLDDECMVNKLNEIS 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------SSITSKDLISVS- 277
+E + L + L T+ +S GD+R+AI LQ L+G +++ +L ++S
Sbjct: 186 IKESMKLSKDILETIIEVSNGDMRKAIMLLQNLKYLYGFKNRTKKNFEDVSTSELKTLSF 245
Query: 278 ---------GVIPPEVVEGLFAVCRSGDFDLANKEVN------------NIIAEGYPASL 316
+ P + E + + ++ N+ V+ II+ GYP
Sbjct: 246 KILTNNNDNDITPENIYELAACITLTRAQEIINESVSCKSVIELSDLTKKIISLGYPIDT 305
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
+L QL +++T ++ Q+++I ++ + + +EY+QLL+
Sbjct: 306 ILMQLNKGILKTNTLNTIQKSKIIINSGDILLKIKECGNEYIQLLN 351
>gi|409083800|gb|EKM84157.1| hypothetical protein AGABI1DRAFT_110722 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 341
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 186/333 (55%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 21 PWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTTSIHCLAHQLLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVRTKIK FA Q++ P +KI+ILDEADSMT
Sbjct: 80 DAYKEGVLELNASDERGIEVVRTKIKQFA-------QKKVTLPPGRHKIVILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC E
Sbjct: 133 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L S+GD+R+AI LQ FG ++ ++ + P VV+
Sbjct: 193 EDVKYNDDGLTALIFTSEGDMRQAINNLQSTFSGFG-FVSGDNVFKICDQPHPIVVQAAI 251
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD D A ++ + +GY A ++ LF VV +++ + + K +
Sbjct: 252 RSCLKGDVDEALGKIKELWDQGYSAVDIVVTLFRVVKTFDEVPEYTKLEFIKEIGFTHMR 311
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL + ++ +C M PE F+
Sbjct: 312 ILEGVGTLVQL----AGLVARLCKMNHKPELFK 340
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 188/319 (58%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ D+ ++V L N +E + PH+LF GP GTGKTT A +I
Sbjct: 11 PTPGKTEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WQENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF LS + + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
V I E + + + + L + GD+R+AI LQ AA + G ++ + + +++ P
Sbjct: 181 VREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITATARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ E G ++ QL E D+ + R+ +
Sbjct: 240 EEVEAMVDHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEF-DVPERATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|448357101|ref|ZP_21545808.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
gi|445650274|gb|ELZ03200.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
Length = 339
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 190/314 (60%), Gaps = 13/314 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A AIA +++
Sbjct: 26 TEVWIEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY 85
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELNASD RGI+VVR +IK FA + G GY ++II LDEAD++
Sbjct: 86 DDD-WRENFLELNASDQRGIDVVRDRIKDFARASFG------GYD---HRIIFLDEADAL 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E + ++V I
Sbjct: 136 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIA 195
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
++ + + + + L + GD+R+AI LQ AA + G ++ + + +++ PE VE
Sbjct: 196 ADQDIEVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITATARPEEVEQ 254
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ +GDF A + +++ + G ++ QL E DI +++ R+ + L EV
Sbjct: 255 MVDQAIAGDFTAARASLEDLLTDRGLAGGDVIDQLHRSAWEF-DIPEQETVRLLEQLGEV 313
Query: 347 DKCLVDGADEYLQL 360
D + +GA+E LQL
Sbjct: 314 DFRITEGANERLQL 327
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 190/314 (60%), Gaps = 13/314 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ W+EKYRP+++ ++ E+++ L N +E + PH++F GP GTGKTT A AIA +++
Sbjct: 22 TEVWIEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIY 81
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELNASD RGI+VVR +IK FA + G GY ++II LDEAD++
Sbjct: 82 DDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLDEADAL 131
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L++ + ++V I
Sbjct: 132 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEAQVREIA 191
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
++ + + + + L + GD+R+AI LQ AA + G ++ + + +++ PE VE
Sbjct: 192 ADQDIEVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITATARPEEVEE 250
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ GDF A + +++ + G ++ QL E DI ++ R+ + L EV
Sbjct: 251 MVGHAIDGDFTAARAALEDLLTDRGLAGGDVIDQLHRSAWEF-DIPEQATVRLLERLGEV 309
Query: 347 DKCLVDGADEYLQL 360
D + +GA+E LQL
Sbjct: 310 DYRITEGANERLQL 323
>gi|426201141|gb|EKV51064.1| hypothetical protein AGABI2DRAFT_189375 [Agaricus bisporus var.
bisporus H97]
Length = 341
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 186/333 (55%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 21 PWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTTSIHCLAHQLLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVRTKIK FA Q++ P +KI+ILDEADSMT
Sbjct: 80 DAYKEGVLELNASDERGIEVVRTKIKQFA-------QKKVTLPPGRHKIVILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC E
Sbjct: 133 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L S+GD+R+AI LQ FG ++ ++ + P VV+
Sbjct: 193 EDVKYNDDGLTALIFTSEGDMRQAINNLQSTFSGFG-FVSGDNVFKICDQPHPIVVQAAI 251
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD D A ++ + +GY A ++ LF VV +++ + + K +
Sbjct: 252 RSCLKGDVDEALGKIKELWDQGYSAVDIVVTLFRVVKTFDEVPEYTKLEFIKEIGFTHMR 311
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL + ++ +C M PE F+
Sbjct: 312 ILEGVGTLVQL----AGLVARLCKMNHKPELFK 340
>gi|390604618|gb|EIN14009.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 342
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 186/331 (56%), Gaps = 12/331 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV E + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 22 PWVEKYRPKVLDDVVGNIETIERLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI VVR KIKTFA Q++ P +KI+ILDEADSMT
Sbjct: 81 NAYKEGVLELNASDERGIEVVRNKIKTFA-------QKKVTLPPGRHKIVILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+ L + + R+L IC
Sbjct: 134 GAQQALRRTMEIYANTTRFCLACNMSNKIIEPIQSRCAILRYSKLRDTELLKRLLEICEL 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L S+GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 194 EKVKYNDDGLTALIFTSEGDMRQAINNLQSTWSGFG-FVSGDNVFKVCDQPHPITVQTII 252
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ D D A +++N++ +GY A ++ +F VV +D+ + + K +
Sbjct: 253 RACQKSDLDTAMEKLNDLWEQGYSAVDIVVTIFRVVKTMDDLPEYTELEYIKEIGFTHMR 312
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
+++G +QL + + + + NM P+ FQ
Sbjct: 313 ILEGVGTIIQLGGLIARLSKM--NMRPQLFQ 341
>gi|156083805|ref|XP_001609386.1| replication factor C subunit 4 [Babesia bovis T2Bo]
gi|154796637|gb|EDO05818.1| replication factor C subunit 4 [Babesia bovis]
Length = 306
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 171/274 (62%), Gaps = 10/274 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ W+EKYRP +KDV EV R L N P++L GPPGTGKTT+ L +AH++
Sbjct: 2 SNDIWIEKYRPGILKDVIGNPEVTRRLEVIAREGNMPNLLLCGPPGTGKTTSILCLAHEM 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G +K+ VLELNASDDRG++VVR IK FA +V P +KIIILDE DS
Sbjct: 62 LGNH-FKNAVLELNASDDRGVDVVRGAIKNFAKKSVV-------LPPNKHKIIILDEVDS 113
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MTE AQ ALRR ME YSK TRF CN ++IIEP+ SRCA R++PL +E++ +R++HI
Sbjct: 114 MTEAAQQALRRIMEIYSKTTRFALACNQSTKIIEPIQSRCAVIRYEPLQDEMILTRLIHI 173
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
C EE + + + L + GD+RRA+ LQ + + + ITS+++ V V PE++
Sbjct: 174 CKEENVQYTNDGMEALLFTANGDMRRAVNNLQNVSSGY-NLITSQNVYKVCDVPSPELIR 232
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGY-PASLLLS 319
L C G + A+++ +++A G+ P +L++
Sbjct: 233 KLLQDCLDGQWRPAHEKAEDLLALGHSPFDILMT 266
>gi|451927308|gb|AGF85186.1| replication factor C small subunit [Moumouvirus goulette]
Length = 369
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 195/345 (56%), Gaps = 32/345 (9%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++D+A E ++++ N++ H LFYGPPGTGKT+ LA+ ++F
Sbjct: 7 SIPWIEKYRPRRLQDIAQSENLIKLFKNSISKGEMTHFLFYGPPGTGKTSAILAMGREIF 66
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E + +RV+E NASDDRGIN VR KI A V S G P YKIIILDEADSM
Sbjct: 67 -KEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSISNPDGTIIPSYKIIILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK L ++ M +++ I
Sbjct: 126 TDEAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAIYFKKLDDDCMVNKLNEIS 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------SSITSKDLISVS- 277
+E + L E L T+ +S GD+R+AI LQ L+ I++ +L ++S
Sbjct: 186 IKESMKLSKEILETIIEVSNGDMRKAIMLLQNLKYLYAFKNRTKKNFEDISTSELKTLSF 245
Query: 278 ---------GVIPPEVVEGLFAVCRSGDFDLANKEVN------------NIIAEGYPASL 316
+ P ++ E ++ ++ N+ ++ II+ GYP
Sbjct: 246 KILSKNSNRDITPDDIYELAASITLKQAQEIINESISCKNVIELSDLTKKIISMGYPIDT 305
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLL 361
+L QL +++T ++ Q+++I ++ + + +EY+QLL
Sbjct: 306 ILMQLNKGILKTNILNTIQKSKIIINSGDILLKIKECGNEYIQLL 350
>gi|190345167|gb|EDK37005.2| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 180/315 (57%), Gaps = 12/315 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE V L + N PHM+ G PG GKTT+ +A++L G
Sbjct: 11 PWVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLGK 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+Y LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 71 TMYDQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRHKIIILDEADSMTP 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ L+++ + SR+L I
Sbjct: 124 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIAKA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + +++ L L ++GD+R+AI +Q FG + ++ + P V++ +
Sbjct: 184 EDVKYNSQGLQALIFTAEGDMRQAINNMQSTVAGFG-FVDDVNVFKIVDQPHPLVIKKIL 242
Query: 290 AVCRS----GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
C S GD D A + ++++ +GY A +++ F V IS+ ++ I K +
Sbjct: 243 NSCCSNDGKGDIDTALRLLDDLWNKGYSAIDIVTSTFRVAKTLPGISESKRLDIIKEVGL 302
Query: 346 VDKCLVDGADEYLQL 360
V +++G YLQL
Sbjct: 303 VHMRVLEGVSTYLQL 317
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 185/311 (59%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP++++DV ++ L + ++ + PH+LF GP GTGKT ++++IA +L+G +
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEAD++T+D
Sbjct: 72 -WQDNFLELNASDERGIDVVRDRIKDFA---------RSSFGGHNYRVIFLDEADALTDD 121
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L ++ +++ + I E
Sbjct: 122 AQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETE 181
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
GL + + L + GD+RRAI LQ AA G S+ + + +++ PE +E +
Sbjct: 182 GLEHTDDGIDALVYAADGDMRRAINALQ-AASATGDSVNEETVYAITATARPEEIETMVT 240
Query: 291 VCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A +++++ G ++ Q+ V E D+ + R+ L E D
Sbjct: 241 EALGGDFAAARATLDDLLTNRGLAGGDIIDQVHRSVWEF-DVEEAAAVRLLDRLGEADYR 299
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 300 IAEGANERVQL 310
>gi|354545639|emb|CCE42366.1| hypothetical protein CPAR2_200090 [Candida parapsilosis]
Length = 320
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 175/311 (56%), Gaps = 8/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 8 PWVEKYRPHVLDDIVGNEETIERLKIIVQDGNMPNMIISGLPGIGKTTSVHCLAYELLGK 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y LELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 68 EHYHQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRTKIIILDEADSMTP 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ LS+E + R+L I
Sbjct: 121 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEEVLKRLLDIIKS 180
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L L ++GD+R+AI LQ FG + ++ + P V++ +
Sbjct: 181 ENVQYNNEGLQALIFSAEGDMRQAINNLQSTVAGFG-FVNDVNVFKIVDQPHPLVIQNIL 239
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ C GD D A ++ + +GY A +++ F V ++ + ++ + K + V
Sbjct: 240 SNCLQGDVDKALGLLDGLWHKGYSAIDIVTSTFKVAKTIPNVDESKRLNMIKEIGFVHMR 299
Query: 350 LVDGADEYLQL 360
+++G YLQL
Sbjct: 300 VLEGVGSYLQL 310
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 182/321 (56%), Gaps = 14/321 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL +E + SR+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL T+ +QGD+R+AI LQ AA IT + G++ P ++
Sbjct: 176 EGVKISDDALETIYEFTQGDMRKAINALQIAAAT-EKEITEDVVARALGMVSPRLLRETL 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G+F A ++ + +G L ++ Q+ V+ D+ + + + +AE
Sbjct: 235 QEALKGNFSKAMTQIYGFVVDGGVGELEIIRQIHREVLRL-DVPEYVKPELAYIIAEAHY 293
Query: 349 CLVDGADEYLQLLDVASNVIR 369
+ GA Q+ + + R
Sbjct: 294 ATLRGARGLTQIFGALAKIRR 314
>gi|410670416|ref|YP_006922787.1| replication factor C [Methanolobus psychrophilus R15]
gi|409169544|gb|AFV23419.1| replication factor C [Methanolobus psychrophilus R15]
Length = 301
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 12/296 (4%)
Query: 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125
Q E V L + ++T N PH+LF GPPG GKT T+++IA +LFG + ++ ELNASD+R
Sbjct: 4 QTETVERLKSYIKTRNLPHLLFSGPPGVGKTATSVSIARELFG-DSWRENFTELNASDER 62
Query: 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185
GI+VVRTKIK FA G +KII LDEAD++T DAQ+ALRRTME Y+
Sbjct: 63 GIDVVRTKIKNFAKTTPIGG--------ADFKIIFLDEADALTSDAQSALRRTMERYTNN 114
Query: 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI 245
RF CNY S+IIEP+ SRCA +RF+PLS+E ++ RV + EGL++ + + + +
Sbjct: 115 CRFILSCNYSSKIIEPIQSRCAVYRFRPLSDEAVAGRVRFVAQNEGLDIAEDGVDAIKYV 174
Query: 246 SQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVN 305
+QGD+R+AI LQ AA L +I + ++ PE V L SG+F A K ++
Sbjct: 175 AQGDMRKAINSLQAAA-LIADTIHRDAIYKITATARPEQVRELIETALSGNFTAARKHLD 233
Query: 306 NIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+ E G ++ Q++ + E +I +++ + + E+D L +GA+E +QL
Sbjct: 234 VFLLEQGLSGEDVIGQVYRAIFEI-NIPEKKMVELIDVIGEIDFRLTEGANERIQL 288
>gi|441432472|ref|YP_007354514.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|440383552|gb|AGC02078.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 369
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 195/346 (56%), Gaps = 32/346 (9%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++D+A E ++++ N+ H LFYGPPGTGKT+ LA+ ++F
Sbjct: 7 SVPWIEKYRPRRLQDIAQSENLIKLFKNSTSKGEMTHFLFYGPPGTGKTSAILAMGREIF 66
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E + +RV+E NASDDRGIN VR KI A V S G P YKIIILDEADSM
Sbjct: 67 -KEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTIIPSYKIIILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK L +E M +++ I
Sbjct: 126 TDEAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAVYFKKLDDECMVNKLNEIS 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------SSITSKDLISVS- 277
+E + L + L T+ +S GD+R+AI LQ L+G +++ +L ++S
Sbjct: 186 IKESMKLSKDILETIIEVSNGDMRKAIMLLQNLKYLYGFKNRTKKNFEDVSTSELKTLSF 245
Query: 278 ---------GVIPPEVVEGLFAVCRSGDFDLANKEVN------------NIIAEGYPASL 316
+ P + E + + ++ N+ V+ II+ GYP
Sbjct: 246 KILTNNNDNDITPENIYELAACITLTRAQEIINESVSCKSVIELSDLTKKIISLGYPIDT 305
Query: 317 LLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
+L QL +++T ++ Q+++I ++ + + +EY+QLL+
Sbjct: 306 ILMQLNKGILKTNTLNTIQKSKIIINSGDILLKIKECGNEYIQLLN 351
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 188/314 (59%), Gaps = 15/314 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ E+++ + ++ PH+LFYGPPGTGKT+T LA A Q++ P
Sbjct: 9 PWVEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLLFYGPPGTGKTSTILACAQQIYSP 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S+VLELNASDDRGI +VR +I +FA+ +G +K+I+LDEAD+M
Sbjct: 69 KEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTG----------FKLIVLDEADAM 118
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ RF ICNY+S+II L SRC +FRF PL+ MS R+ H+
Sbjct: 119 TNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLTAAQMSPRIDHVI 178
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E L + A+ L ++QGD+R+A+ LQ + F + ++ G E +
Sbjct: 179 TQERLTVTADGKKALMDLAQGDMRKALNILQSTSMAF-DEVNETNVYLCVGHPLKEDISD 237
Query: 288 LFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + + DF+ + +N + + +G +L+Q+ + V ++ D+ + + +AE+
Sbjct: 238 IVSTLLNEDFEYSYNHINKLKVGKGLALQDVLTQVH-LYVHRIELPDKVKMYLIDKMAEI 296
Query: 347 DKCLVDGADEYLQL 360
+ L G E +QL
Sbjct: 297 EYRLAAGTSEKIQL 310
>gi|409051889|gb|EKM61365.1| hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa
HHB-10118-sp]
Length = 342
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 187/333 (56%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV E + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 22 PWVEKYRPKTLDDVVGNSETIERLKVVARDGNCPHIILSGLPGIGKTTSIHCLAHQLLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR K+K FA Q++ P +KI+ILDEADSMT
Sbjct: 81 DAYKEGVLELNASDERGIDVVRNKVKAFA-------QKKVTLPPGRHKIVILDEADSMTP 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME ++ TRF CN ++IIEP+ SRCA R+ L + + R+L IC
Sbjct: 134 GAQQALRRTMEIFANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDAEVLRRLLEICEM 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + + L+ L ++GD+R+AI LQ FG +++ ++ V P VV+ +
Sbjct: 194 EGVKYNDDGLTALIFTAEGDMRQAINNLQSTFSGFG-FVSADNVFKVCDQPHPVVVQAMI 252
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD + A +++N + GY A ++ +F VV ++I + + K +
Sbjct: 253 RSCLKGDVENAMEKLNELWNHGYSAVDIVVTIFRVVKTFDEIPEYTKLEYIKEIGFTHMR 312
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL ++ +C M PE F+
Sbjct: 313 ILEGVSTLIQL----GGLMARLCKMNLKPELFK 341
>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_APKG10F13]
Length = 323
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/313 (44%), Positives = 188/313 (60%), Gaps = 16/313 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP + +V Q V L + + + PH+LF GPPGTGKTT +LA+A ++FG E
Sbjct: 5 WVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFG-E 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ + ELNASD+RGI+VVR KIK FA A +G G +KII LDEAD++T
Sbjct: 64 HWQHNLHELNASDERGIDVVRGKIKEFARTAPIGGG---------GFKIIFLDEADALTS 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS+ RF CNY S+IIEP+ SRCA FRF+PL E + + I
Sbjct: 115 AAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGR 174
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI-SVSGVIPPEVVEGL 288
E L ++ +A L+ ++QGDLRRAI LQ AA ITS+ + +VS P EV E +
Sbjct: 175 EKLKVNDDAYEALAYLAQGDLRRAINSLQMAA-AADKDITSEVVYQAVSAARPGEVRE-V 232
Query: 289 FAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ G+F A + ++ II G +L Q+ V E E I DE + ++ + LAEVD
Sbjct: 233 LELALQGNFAGARERLDALIITYGLAGEDILRQMHRTVRELE-IPDEAKVQLIEKLAEVD 291
Query: 348 KCLVDGADEYLQL 360
L +GA +Q+
Sbjct: 292 FRLSEGATARIQI 304
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 188/319 (58%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREIYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+++ ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDATEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
V I EEG+ + + + L + GD+R+AI LQ AA + G ++ + + +++ P
Sbjct: 181 VREIAAEEGIEVTDDGVDALVFAADGDMRKAINGLQAAA-VMGETVDEETVFAITSTARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ + G ++ QL + DI + R+ +
Sbjct: 240 EEVEEMVEHAIDGDFTAARAALEDLLTDRGLAGGDVIDQLHRSAWQF-DIPERATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + GA+E LQL
Sbjct: 299 RLGEVDYRITTGANERLQL 317
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 188/316 (59%), Gaps = 11/316 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+++ PWVEKYRP ++ D+ E+++ + + PH+LFYGPPGTGKT+T LA A Q
Sbjct: 8 RTNLPWVEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQ 67
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP+ + S VLELNASDDRGI +VR +I FA+ S + G +K+IILDEAD
Sbjct: 68 IYGPKEFGSMVLELNASDDRGIGIVRGEILNFASTK--SIFKSG------FKLIILDEAD 119
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQNALRR +E +++ RF ICNY+S+II L SRC +FRF PLS MS R+ +
Sbjct: 120 AMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEY 179
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ +E L + + L ++QGD+R+A+ LQ + F +T ++ G+ +
Sbjct: 180 VIEQERLTVTDDGKKALMDLAQGDMRKALNILQSTSMAF-EEVTENNVYQCVGLPLKSDI 238
Query: 286 EGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ + DF + ++N + +++G +L+Q+ + V + +E + + +A
Sbjct: 239 SNMVITLLNEDFAFSYDQINKVKVSKGLALQDVLTQI-HLYVHRIEFPNEVKMYLIDKMA 297
Query: 345 EVDKCLVDGADEYLQL 360
E++ L G E +QL
Sbjct: 298 EIENRLAAGTSEKIQL 313
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 158/260 (60%), Gaps = 14/260 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ Q+ V + L N PH+LF+GPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC--PPYKIIILDEADSMT 168
++ VLELNASD+RGI ++R K+K FA P P+++IILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGIAMIREKVKEFAKT----------IPTVKAPFRLIILDEADNMT 116
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ ALRR ME Y+ RF + NY S IIEP+ SRC+ FRF PL ++ + R+ I +
Sbjct: 117 PDAQQALRRIMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAVLGRLRDIAS 176
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EG+ + EAL + ISQGD+R+AI LQ AA L G + + + G + P V +
Sbjct: 177 REGVKVTDEALEAIWDISQGDMRKAINTLQAAASL-GGVVDEEAVYKALGKVSPTRVRAI 235
Query: 289 FAVCRSGDFDLANKEVNNII 308
GDF A KE ++I
Sbjct: 236 ITEAVIGDFSKAVKEAMSLI 255
>gi|289581577|ref|YP_003480043.1| replication factor C [Natrialba magadii ATCC 43099]
gi|448283016|ref|ZP_21474295.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
gi|445574724|gb|ELY29212.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
Length = 341
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 189/314 (60%), Gaps = 13/314 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ W+EKYRP+ + ++ E +V L +E + PH++F GP GTGKTT A AIA +++
Sbjct: 28 TEVWIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY 87
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELNASD RGI+VVR +IK FA + G GY ++II LDEAD++
Sbjct: 88 DDD-WRENFLELNASDQRGIDVVRDRIKDFARASFG------GYD---HRIIFLDEADAL 137
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E + ++V I
Sbjct: 138 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIA 197
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
++ + + + + L + GD+R+AI LQ AA + G ++ + + +++ PE VE
Sbjct: 198 ADQDIEVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITATARPEEVEE 256
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ +GDF A + +++ + G ++ QL E DI +++ R+ + L EV
Sbjct: 257 MVEQAIAGDFTAARASLEDLLTDRGLAGGDVIDQLHRSAWEF-DIPEQETVRLLERLGEV 315
Query: 347 DKCLVDGADEYLQL 360
D + +GA+E LQL
Sbjct: 316 DFRITEGANERLQL 329
>gi|344303413|gb|EGW33662.1| hypothetical protein SPAPADRAFT_59031 [Spathaspora passalidarum
NRRL Y-27907]
Length = 324
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 182/312 (58%), Gaps = 10/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +++D+ EE V L + N P+M+ G PG GKTT+ +AH+L G
Sbjct: 12 PWVEKYRPYKLQDIVGNEETVERLKIIAKDGNMPNMIISGLPGIGKTTSVHCLAHELLG- 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 71 EYYHQATLELNASDDRGIDVVRNKIKQFA-------QTKIVLPPGRHKIIILDEADSMTP 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ L++E + +R+L I
Sbjct: 124 GAQQALRRTMEIYSNSTRFAFACNQSSKIIEPLQSRCAILRYNKLADEEVLARLLEIAKM 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + ++E L L ++GD+R+AI LQ FG + ++ + P V++ +
Sbjct: 184 EEVKYNSEGLQALIFTAEGDMRQAINNLQSTVAGFG-FVNDVNVFKIVDQPHPLVIQNIL 242
Query: 290 AVC-RSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
C + D D A + ++++ ++GY A +++ F V DI+++ + + K + V
Sbjct: 243 LSCVKDKDLDKAMELLDSLWSKGYSAIDIVTSTFKVAKTIPDINEQTRLDVIKEIGFVHM 302
Query: 349 CLVDGADEYLQL 360
+++G YLQL
Sbjct: 303 RILEGVSTYLQL 314
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 189/318 (59%), Gaps = 14/318 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + W EKYRP++++DV +++ R L + +++ N PH+LF GPPG GKT A+A+A
Sbjct: 1 MAEDEIWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDE 163
+L+G E + S +ELNASD+RGI+VVR IK FA A +G + +KII LDE
Sbjct: 61 ELYG-ETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK---------FKIIFLDE 110
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD++T DAQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF PL+ +++ +
Sbjct: 111 ADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGI 170
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPE 283
I EGL ++ + + L +++GD+RRAI LQ AA + IT+ + + P+
Sbjct: 171 TRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATI-AKDITADVIYQTTSTAKPK 229
Query: 284 VVEGLFAVCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
+E + + +G F D NK +I G + ++ Q++ + E + ++ +
Sbjct: 230 EIEDMLKLALNGQFMDSRNKLDELLITYGLSGTDIIDQIYRSMFEL-GLDEDVLVALVDR 288
Query: 343 LAEVDKCLVDGADEYLQL 360
+ E D L +GA E +Q+
Sbjct: 289 IGEADFRLTEGASERIQI 306
>gi|393218168|gb|EJD03656.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 338
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 186/330 (56%), Gaps = 10/330 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV E + L NCPH++ G PG GKTT+ +AHQ+ G
Sbjct: 18 PWVEKYRPQTLDDVVGNSETIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQMLG- 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 77 EAYKDGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPGRHKIVILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC
Sbjct: 130 GAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEM 189
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L S+GD+R+AI LQ FG ++ ++ V P +V+ +
Sbjct: 190 EQVQYNDDGLTALIFTSEGDMRQAINNLQSTHSGFG-FVSGDNVFKVCDQPHPILVQAMI 248
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD + +++ + +GY A ++ +F VV +++ + + K +
Sbjct: 249 RACMKGDINTTMEKLTELWDQGYSAVDIVVTIFRVVKTFDELPEYTKLEYIKEIGFTHMR 308
Query: 350 LVDGADEYLQLLDVASNVIRAVCNMPEEFQ 379
+++G +QL +A+ + + N PE F+
Sbjct: 309 ILEGVGTLVQLGGLAARLCKMNMN-PELFK 337
>gi|448825607|ref|YP_007418538.1| putative replication factor C small subunit [Megavirus lba]
gi|444236792|gb|AGD92562.1| putative replication factor C small subunit [Megavirus lba]
Length = 364
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 188/347 (54%), Gaps = 32/347 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PW+EKYRP+++KD + ++ + N+ H LFYGPPGTGKT+ LA+ ++
Sbjct: 7 NSVPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREI 66
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
F E + +RV+E NASDDRGIN VR KI A V + G P YKIIILDEADS
Sbjct: 67 F-KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADS 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT++AQ+ALR +E YS TRF FICNYIS+I + + SRC FK L +E M ++ I
Sbjct: 126 MTDEAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMIDKLKEI 185
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------SSITSKDLISVS 277
+E + L E LST+ +S GD+R+AI LQ L+ ++ +L S+S
Sbjct: 186 STKESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYLYSFKKRKCVDFDKMSIAELKSLS 245
Query: 278 ---------GVIPPEVVEGLFA-VCRSGDFDLANKEVN------------NIIAEGYPAS 315
+I PE + L A + + + + II GYP
Sbjct: 246 FNNLTQSQENIIEPEDIYKLAASITMKQSLKIIHDSIQCKNIIELSDLCKQIITIGYPID 305
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
+L QL ++E+ ++ Q+++I +V + + +EY+QLL+
Sbjct: 306 TILMQLNKAILESNKLNTIQKSKIIINSGDVLLKIKECGNEYIQLLN 352
>gi|388855091|emb|CCF51222.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Ustilago
hordei]
Length = 343
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 186/333 (55%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV + + L NCPH+L G PG GKTT+ L +A L G
Sbjct: 23 PWVEKYRPLRLDDVVGNRDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RG+++VR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGVDIVRNKIKNFA-------QKKVSLPPGRHKIVILDEADSMTP 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ + +E + R+L IC
Sbjct: 135 AAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKIRDEQILKRLLEICKM 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ E L + S+GD+R+AI LQ G + +++ V P ++ L
Sbjct: 195 EGVEYSDEGLGAIIFTSEGDMRQAINNLQSTYTGLG-FVNPENVFKVCDQPHPFLIRSLL 253
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ G D A ++++ I ++GY A +++ LF VV + + + + K +
Sbjct: 254 MACKKGVVDEAMEKLDEIWSKGYAAVDIVTTLFRVVKTLDGVPEATKLEFIKEIGWTHMK 313
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL +I +C + P++FQ
Sbjct: 314 ILEGVATVVQL----GGLIARLCKLSMDPKQFQ 342
>gi|448354529|ref|ZP_21543285.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
gi|445637417|gb|ELY90567.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
Length = 339
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 189/314 (60%), Gaps = 13/314 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ W+EKYRP+ + ++ E +V L +E + PH++F GP GTGKTT A AIA +++
Sbjct: 26 TEVWIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY 85
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELNASD RGI+VVR +IK FA + G GY ++II LDEAD++
Sbjct: 86 DDD-WRENFLELNASDQRGIDVVRDRIKDFARASFG------GYD---HRIIFLDEADAL 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E + ++V I
Sbjct: 136 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIA 195
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
++ + + + + L + GD+R+AI LQ AA + G ++ + + +++ PE VE
Sbjct: 196 ADQDIEVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITATARPEEVEE 254
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ +GDF A + +++ + G ++ QL E DI +++ R+ + L EV
Sbjct: 255 MVDQAIAGDFTAARASLEDLLTDRGLAGGDVIDQLHRSAWEF-DIPEKETVRLLERLGEV 313
Query: 347 DKCLVDGADEYLQL 360
D + +GA+E LQL
Sbjct: 314 DFRITEGANERLQL 327
>gi|448346878|ref|ZP_21535757.1| replication factor C small subunit [Natrinema altunense JCM 12890]
gi|445631215|gb|ELY84447.1| replication factor C small subunit [Natrinema altunense JCM 12890]
Length = 330
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 188/319 (58%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ D+ ++V L N +E + PH+LF GP GTGKTT A +I
Sbjct: 11 PTPGKTEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WQENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+ + + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTVDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
V I E + + + + L + GD+R+AI LQ AA + G ++ + + +++ P
Sbjct: 181 VREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITATARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ E G ++ QL E D+ + R+ +
Sbjct: 240 EEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEF-DVPERATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 182/314 (57%), Gaps = 8/314 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A+ L
Sbjct: 16 STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP----YKIIILD 162
FG + ++ VLE+NASDDRGI+VVR +++ FA+ S P P +K++ILD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFAST---SSFYFASAPAAPTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD M+ DAQ ALRR +E Y+K RF +CN+I++II L SRC +FRF P+ + M SR
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSR 192
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ + EEG+ E L +S GDLRR + LQ +A + IT + + V+G P
Sbjct: 193 LKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASA-MSAGEITEESVYRVTGNPTP 251
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
V G+ + DF + ++V+ ++E +S L + +V D+ E + +
Sbjct: 252 ADVRGIVEDMIAHDFAASWEKVHQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMK 311
Query: 343 LAEVDKCLVDGADE 356
LA+V+ GA E
Sbjct: 312 LADVEYYAAGGAKE 325
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 181/310 (58%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QE++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGFDYRIIFLDEADSLTSD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ + +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVREQVKDIAETE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ L + L L + GD+RRAI LQ AA G + + + ++ PE +E +
Sbjct: 187 EIELTEDGLDALVYAAGGDMRRAINSLQAAATT-GEIVDEEAVYLITSTARPEDIEEMVQ 245
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+F A ++ ++ + G ++ QL V + D+ + R+ + + E D
Sbjct: 246 SAIDGEFLTARSKLETLLVDTGMAGGDIIDQLHRSVWDF-DLDERTTVRLMERIGEADYR 304
Query: 350 LVDGADEYLQ 359
+ +GA+E +Q
Sbjct: 305 ITEGANEQVQ 314
>gi|326427125|gb|EGD72695.1| replication factor C subunit 2 [Salpingoeca sp. ATCC 50818]
Length = 324
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 178/321 (55%), Gaps = 13/321 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK +KD+ EE V L E N P+++ GPPGTGKTT+ L +A L G
Sbjct: 4 PWVEKYRPKVLKDIVGNEETVDRLKVIAEAGNMPNLIIAGPPGTGKTTSILCLARALLGE 63
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP--YKIIILDEADSM 167
++YK V+E NASDDRGI VVR IK F+ R PP +KI+ILDE DSM
Sbjct: 64 DVYKEAVMETNASDDRGIEVVRNNIKMFS---------RKKVTLPPGRHKIVILDEVDSM 114
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRTME Y+ TRF CN +IIEP+ SRCA R+ LS+ + R+L IC
Sbjct: 115 TSAAQQALRRTMEMYANTTRFALACNTSEKIIEPIQSRCAVLRYTRLSDAQLLKRLLEIC 174
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
++E + E L + +QGD+R+AI LQ FG + ++++ V P +V+
Sbjct: 175 DQEMVPKVEEGLEAIIFTAQGDMRQAINNLQSTYAGFG-MVNAENVFKVCDQPHPLLVQA 233
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ A C GD D A + + GY +++ F +V+ D+ + K +
Sbjct: 234 IVAACIEGDIDKAYGGMQELWGMGYAPVDIITVFFR-IVKQYDMPEYLTLEFVKEIGRTH 292
Query: 348 KCLVDGADEYLQLLDVASNVI 368
++DG D ++QL + + ++
Sbjct: 293 IRVLDGVDSFMQLTGLLARLV 313
>gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina
98AG31]
Length = 349
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 200/365 (54%), Gaps = 26/365 (7%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQ--PWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
ST+ ++P KS K +SS+ PWVEKYRP + D+ E + L N
Sbjct: 4 STSTAAPAKSNGTSSGKK----KSSEDIPWVEKYRPIILDDITGNVETIERLKVIARDGN 59
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
CPH++ G PG GKTT+ L +AH L G + YK VLELNASD+RGI+VVR KIKTFA
Sbjct: 60 CPHIIISGAPGIGKTTSILCLAHALLG-DSYKEGVLELNASDERGIDVVRNKIKTFANTK 118
Query: 142 VGSGQRRGGYPCPP--YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
V PP +KIIILDEADSMT AQ ALRRTME Y+ TRF CN+ S+II
Sbjct: 119 V---------TLPPGRHKIIILDEADSMTSGAQQALRRTMEIYANSTRFALACNFSSKII 169
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EP+ SRCA R+ LS++ + R++ IC+ E + E L+ + ++GD+R+AI LQ
Sbjct: 170 EPIQSRCAILRYGKLSDQEILKRLVEICDAENVKYANEGLAAIIFTAEGDMRQAINNLQS 229
Query: 260 AARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319
F ++S+ + V P V++ L A C G+ A + ++ + +GY A +++
Sbjct: 230 TVSGF-EFVSSEAVFKVCDQPHPIVIKQLLAACEKGEVQTALESLDELWTQGYSAIDIVT 288
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM---PE 376
L VV + +++ + K + +++G +QL +I +C + P+
Sbjct: 289 TLSKVVKSMDKMAEYIKLEFIKEIGYTHMRILEGVSTIVQL----GGLISRLCKLKLDPK 344
Query: 377 EFQYD 381
F D
Sbjct: 345 LFNVD 349
>gi|397772266|ref|YP_006539812.1| Replication factor C [Natrinema sp. J7-2]
gi|397681359|gb|AFO55736.1| Replication factor C [Natrinema sp. J7-2]
Length = 360
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 187/314 (59%), Gaps = 13/314 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ W+EKYRP+++ D+ ++V L N +E + PH+LF GP GTGKTT A +IA +++
Sbjct: 46 TEVWIEKYRPERLNDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVY 105
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELNASD RGI+VVR +IK FA + G GY ++II LDEAD++
Sbjct: 106 DDD-WQENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLDEADAL 155
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+ + + ++V I
Sbjct: 156 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIA 215
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
E + + + + L + GD+R+AI LQ AA + G ++ + + +++ PE VE
Sbjct: 216 ATEDIAVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITATARPEEVEA 274
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ GDF A + +++ E G ++ QL E D+ + R+ + L EV
Sbjct: 275 MVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEF-DVPERATVRLLERLGEV 333
Query: 347 DKCLVDGADEYLQL 360
D + +GA+E LQL
Sbjct: 334 DYRITEGANERLQL 347
>gi|448342324|ref|ZP_21531276.1| replication factor C small subunit [Natrinema gari JCM 14663]
gi|445626315|gb|ELY79664.1| replication factor C small subunit [Natrinema gari JCM 14663]
Length = 330
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 186/314 (59%), Gaps = 13/314 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ W+EKYRP+++ D+ ++V L N +E + PH+LF GP GTGKTT A +IA +++
Sbjct: 16 TEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVY 75
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELNASD RGI+VVR +IK FA + G GY ++II LDEAD++
Sbjct: 76 DDD-WQENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLDEADAL 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+ + + ++V I
Sbjct: 126 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIA 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
E + + + + L + GD+R+AI LQ AA + G ++ + +++ PE VE
Sbjct: 186 ATEDIAVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEGTVFAITATARPEEVEA 244
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ GDF A + +++ E G ++ QL E D+ + R+ + L EV
Sbjct: 245 MVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEF-DVPERATVRLLERLGEV 303
Query: 347 DKCLVDGADEYLQL 360
D + +GA+E LQL
Sbjct: 304 DYRITEGANERLQL 317
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 186/311 (59%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP++++DV ++ L + ++ + PH+LF GP GTGKT +A++IA +++G +
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIYGDD 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK FA + G GY Y++I LDEAD++T+D
Sbjct: 72 -WQENFLELNASDQRGIDVVRDRIKNFARASFG------GYD---YRVIFLDEADALTDD 121
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF + ++ +++ + I E
Sbjct: 122 AQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQIDDDAVAAHLRDIAGRE 181
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
L + L + GD+RRAI LQ AA G ++ + + +++ PE +EG+
Sbjct: 182 DLEYTEAGIDALVYAADGDMRRAINALQ-AASATGDAVDEEVVYAITATARPEEIEGMVT 240
Query: 291 VCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A +++++ G ++ Q+ V + D+ +E R+ L E D
Sbjct: 241 EALDGDFTAARSTLDDLLTNRGLAGGDIIDQIHRSVW-SFDVEEEAAVRLLDRLGEADFR 299
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 300 IAEGANERVQL 310
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 175/318 (55%), Gaps = 8/318 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP ++ ++ E+VV+ LT +E PH+LFYGPPGTGKTTT LA A ++
Sbjct: 9 SNLPWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKM 68
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIILD 162
+ P S VLELNASD+RGI+VVR I FA A S + P+K++ILD
Sbjct: 69 YHPSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSV---PFKLVILD 125
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E Y+ RF ICNY++ II + SRC +FRF PL + ++ R
Sbjct: 126 EADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQSLIVPR 185
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ I EGL + + L +S+GD+R I LQ A F S + P
Sbjct: 186 LDFIVKSEGLQMTPDGREALLRVSKGDMRTVINTLQSTAMSFEVVSESTVYQCIGQPTPA 245
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
E+ + + + NK ++ GY +++ L D+ + DI D + I
Sbjct: 246 EMKKVVTLLLNQTAKTCMNKIKKSLFENGYALQDVITHLHDLAF-SMDIPDSAMSAIIVG 304
Query: 343 LAEVDKCLVDGADEYLQL 360
L EV++ L G QL
Sbjct: 305 LGEVEENLSTGCSNETQL 322
>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
Length = 344
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 183/329 (55%), Gaps = 10/329 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+ + L N PHM+ G PG GKTT+ L +AHQL G
Sbjct: 24 PWVEKYRPVVLDDIVGNEDTIARLKVIARDGNMPHMIISGMPGIGKTTSVLCLAHQLLGS 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 84 A-YREGVLELNASDERGIDVVRNKIKGFA-------QKKVNLPPGRHKIVILDEADSMTA 135
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L+E+ + R+ IC
Sbjct: 136 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLNEQQIQKRLSEICKA 195
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + ++ L ++GD+R+AI LQ F + S+++ V+ P V +
Sbjct: 196 ESVSITDDGMAALIMTAEGDMRQAINNLQSTVAGF-DLVNSENVFKVADQPSPVAVLDMI 254
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD D A + + I G+ +++ +F VV ++ + + + + +
Sbjct: 255 RHCMHGDIDKALERLKGIWGLGFSPVDIITTMFRVVKTMNEVPEYSRLEMLREIGSAHMI 314
Query: 350 LVDGADEYLQLLDVASNVIRAVCNMPEEF 378
+++G YLQL + + + +A PE F
Sbjct: 315 VLEGVQTYLQLSALIARLAKAHLK-PELF 342
>gi|448524726|ref|XP_003869003.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380353356|emb|CCG22866.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 320
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 175/311 (56%), Gaps = 8/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 8 PWVEKYRPHVLDDIVGNEETIERLKVIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGK 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y LELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 68 EHYHQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRTKIIILDEADSMTP 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ LS+E + R+L I
Sbjct: 121 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEEVLKRLLDIIKL 180
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L L ++GD+R+AI +Q FG + ++ + P V++ +
Sbjct: 181 ENVQYNNEGLQALIFSAEGDMRQAINNMQSTVAGFG-FVNDVNVFKIVDQPHPLVIQNIL 239
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ C GD D A ++ + +GY A +++ F V ++ + ++ + K + V
Sbjct: 240 SNCLQGDVDKAIGLLDGLWHKGYSAIDIVTSTFKVAKTIPNVDESKRLNMIKEIGFVHMR 299
Query: 350 LVDGADEYLQL 360
+++G YLQL
Sbjct: 300 VLEGVGSYLQL 310
>gi|308198335|ref|XP_001386998.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|149388978|gb|EAZ62975.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 325
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 187/325 (57%), Gaps = 11/325 (3%)
Query: 37 VKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKT 96
+KR P L+ PWVEKYRP+++ DV EE + L + N PHM+ G PG GKT
Sbjct: 1 MKRTDEPKLEL--PWVEKYRPRRLDDVVGNEETIERLKLIAKDGNMPHMIISGLPGIGKT 58
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156
T+ +A++L G + Y+ LELNASDDRGI+VVR +IK FA Q + P +
Sbjct: 59 TSIHCLAYELLGDDYYQQATLELNASDDRGIDVVRNRIKQFA-------QTKIKLPPGRH 111
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216
KIIILDEADSMT AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ L++
Sbjct: 112 KIIILDEADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLAD 171
Query: 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISV 276
+ + +R+L + E + ++E L L ++GD+R+AI LQ FG + ++ +
Sbjct: 172 DQVLTRLLEVSAAENVKFNSEGLQALIFTAEGDMRQAINNLQSTVAGFG-FVNDINVFKI 230
Query: 277 SGVIPPEVVEGLFAVC-RSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQ 335
P V++ + C + D D A ++++ A+GY A +++ F V I +++
Sbjct: 231 VDQPHPLVIQRILIHCTKDRDIDRALALLDDLWAKGYSAIDIVTSTFKVSKTLPGIGEQK 290
Query: 336 QARICKCLAEVDKCLVDGADEYLQL 360
+ + K + V +++G YLQL
Sbjct: 291 RLELIKEVGFVHMRVLEGVSSYLQL 315
>gi|301094042|ref|XP_002997865.1| replication factor C subunit 2 [Phytophthora infestans T30-4]
gi|262109788|gb|EEY67840.1| replication factor C subunit 2 [Phytophthora infestans T30-4]
Length = 327
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 174/311 (55%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L + N +++ GPPGTGKTT+ L +A +L G
Sbjct: 8 PWVEKYRPRVLADVVGNRDTIASLQAMAKAGNMTNLILSGPPGTGKTTSILCLARELLGT 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNASDDRGIN VR+KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 68 SL-KQAVLELNASDDRGINTVRSKIKMFA-------QQKVTLPPGRHKIVILDEADSMTA 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA RF L +E++ R+L +C E
Sbjct: 120 AAQQALRRTMEIFSATTRFALACNNSTKIIEPIQSRCAILRFTRLPDEMLLRRLLTVCQE 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L+ L ++GD+R A+ LQ A F S ++ +++ V P VV +
Sbjct: 180 ENVGYKEEGLAALIFTAEGDMRNALNNLQATASGF-SFVSDENVFKVCDQPHPAVVREIL 238
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A K+ ++ GY + ++ +F V ++ + K + C
Sbjct: 239 NHCAKGELDGAEKQAVDLWKSGYSSLDIIGTIFRVCKALPMDDEKLKLEFIKLIGATHMC 298
Query: 350 LVDGADEYLQL 360
+ DG LQ+
Sbjct: 299 IADGVSTLLQI 309
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 184/307 (59%), Gaps = 13/307 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP + +VA Q+++ L + + + PH+LF GP G GKTT+A+AIA +++G +
Sbjct: 14 WIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA + G GY Y++I LDEAD++T D
Sbjct: 74 -WRDNFLELNASDERGIDVVRDRIKNFARTSFG------GYD---YRVIFLDEADALTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME ++ TRF CNY ++II+P+ SRCA FRF PL E ++ V I EE
Sbjct: 124 AQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVEQIAGEE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + + + L + GD+R+AI LQ AA G ++ + + +++ PE +E +
Sbjct: 184 GIEITDDGVDALVYAADGDMRKAINGLQAAATT-GETVDEEAVYAITAAARPEEIETMVQ 242
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A ++++++ + G ++ QL E + D+ R+ + + E D
Sbjct: 243 HAIGGDFTAARAKLDDLLTDWGLGGGDVIDQLHRSAWSFE-LDDQATVRLLERVGETDYR 301
Query: 350 LVDGADE 356
+ GA+E
Sbjct: 302 ITQGANE 308
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 193/321 (60%), Gaps = 11/321 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP ++ PWVEKYRP+ + ++ +++ + + PH+L YGPPGTGKT+T L
Sbjct: 1 MAPAGSANLPWVEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A A QL+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++I
Sbjct: 61 ACARQLYREREFSSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M
Sbjct: 113 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMV 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+ H+ EEG+++ + + L ++S GD+RRA+ LQ + FG +T +++ + +G
Sbjct: 173 PRLQHVIQEEGVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFG-KVTEENVYTCTGHP 231
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+ + + DF A +++ + +G +L+++ + V D + ++
Sbjct: 232 LKSDIANILDWMLNQDFSTAYRKIMELKTLKGLALQDILTEI-HLFVHRVDFPPSIRIQL 290
Query: 340 CKCLAEVDKCLVDGADEYLQL 360
LA+++ L G E +QL
Sbjct: 291 LIKLADIEYRLAAGTSEKIQL 311
>gi|395334442|gb|EJF66818.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 344
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 179/328 (54%), Gaps = 9/328 (2%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A L PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+
Sbjct: 16 ASTLPYELPWVEKYRPQVLDDVVGNTDTIERLKVIARDGNCPHIIISGMPGIGKTTSIHC 75
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+AHQL G + YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+IL
Sbjct: 76 LAHQLLG-DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPSGRHKIVIL 127
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+ L + +
Sbjct: 128 DEADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDTEVLK 187
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP 281
R+L IC E + + E L L ++GD+R+AI LQ FG ++ ++ V
Sbjct: 188 RLLEICEMEKVQYNDEGLEALIFTAEGDMRQAINNLQSTWSGFG-FVSGDNVFKVCDQPH 246
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
P V+ + C GD D A +N + +GY A ++ +F VV ++I + + K
Sbjct: 247 PITVQAMIRSCLKGDIDAAMDRLNELWDQGYSAVDIVVTIFRVVKTFDEIPEYTKLEFIK 306
Query: 342 CLAEVDKCLVDGADEYLQLLDVASNVIR 369
+ +++G +QL + + + R
Sbjct: 307 EIGWTHMRILEGVGTLVQLGGLMARLCR 334
>gi|112982853|ref|NP_001036917.1| replication factor C subunit 2 [Bombyx mori]
gi|54290087|dbj|BAD61055.1| RFC40 [Bombyx mori]
Length = 340
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 183/329 (55%), Gaps = 10/329 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ D+ E+ V L +T N P+++ GPPG GKTTT L +A L G
Sbjct: 22 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARVLLGV 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+VVR KIK FA Q++ P +KI+ILDEADSMT+
Sbjct: 82 S-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTD 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF N +IIEP+ SRCA R+ LS+ + ++V+ ICN+
Sbjct: 134 GAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNK 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L+ E +S + +QGDLR A+ LQ A+ FG I+ ++ V P VV +
Sbjct: 194 ENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFG-HISPDNVFKVCDEPHPMVVRQML 252
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C D A K + + GY A ++S +F V +T DIS+E + + +
Sbjct: 253 EACTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFR-VCKTLDISEELKLAFIREIGLTHMR 311
Query: 350 LVDGADEYLQLLDVASNVIRAVCNMPEEF 378
+ DG LQL + + + R E+
Sbjct: 312 VADGLSSPLQLAGLLARMCRVAAGGDPEW 340
>gi|353227396|emb|CCA77906.1| probable RFC4-DNA replication factor C, 37 kDa subunit
[Piriformospora indica DSM 11827]
Length = 334
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 189/331 (57%), Gaps = 13/331 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV EE + L + NCPH++ G PG GKTT+ +AHQL GP
Sbjct: 15 PWVEKYRPQVLDDVVGNEETIDRLKVIAKEGNCPHIIISGLPGIGKTTSIHCLAHQLLGP 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR+KIK+FA Q++ P +KIIILDEADSMT
Sbjct: 75 A-YKEGVLELNASDERGIDVVRSKIKSFA-------QKKVTLPPGRHKIIILDEADSMTA 126
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA RF LS+ + R+L I
Sbjct: 127 GAQQALRRTMEIFSNTTRFALACNQSNKIIEPIQSRCAILRFTKLSDAQLMKRLLEILGL 186
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
+ + + + L L S+GD+R+AI LQ FG + ++ V P +V+ L
Sbjct: 187 Q-VQYNEDGLKALIFTSEGDMRQAINNLQSTHSGFG-FVNGDNVFKVCDQPHPLIVQDLI 244
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A ++N + +GY A ++ +F VV +++ + + K + V
Sbjct: 245 RYCVKGNIDRAMTQLNKLWDDGYAAVDIVVTVFRVVKSFDELPEYTKLEYIKEVGFVHMR 304
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
+++G +QL + + + + NM P +F+
Sbjct: 305 VLEGVGTLVQLAGLVARLCK--LNMKPAQFK 333
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 160/260 (61%), Gaps = 14/260 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ Q+ V + L N PH+LF+GPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC--PPYKIIILDEADSMT 168
++ VLELNASD+RGI ++R K+K FA P P+++IILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGIAMIREKVKEFAKT----------MPTVKAPFRLIILDEADNMT 116
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ ALRR ME Y+ RF + NY S IIEP+ SRC+ FRF PL ++ + R+ I +
Sbjct: 117 PDAQQALRRIMEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAVLGRLREIAS 176
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
+EG+ + +AL + +SQGD+R+AI LQ AA L G + + + G + P V +
Sbjct: 177 KEGVKVTDDALEAIWDVSQGDMRKAINTLQAAASL-GGVVDEEVVYKALGKVSPTKVRTI 235
Query: 289 FAVCRSGDFDLANKEVNNII 308
GDF A +EV ++I
Sbjct: 236 VTEAVVGDFGKAVREVMSLI 255
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 184/307 (59%), Gaps = 13/307 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP + +VA Q+++ L + + + PH+LF GP G GKTT+A+AIA +++G +
Sbjct: 14 WIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA + G GY Y++I LDEAD++T D
Sbjct: 74 -WRENFLELNASDERGIDVVRDRIKNFARTSFG------GYD---YRVIFLDEADALTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME ++ TRF CNY ++II+P+ SRCA FRF PL E ++ V I EE
Sbjct: 124 AQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVERIAGEE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + + + L + GD+R+AI LQ AA G ++ + + +++ PE +E +
Sbjct: 184 GIEITDDGVDALVYAADGDMRKAINGLQAAATT-GETVDEEAVYAITAAARPEQIETMVQ 242
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A ++++++ + G ++ QL E + D+ R+ + + E D
Sbjct: 243 HAIGGDFTAARAKLDDLLTDWGLGGGDVIDQLHRSAWSFE-LDDQATVRLLERVGETDYR 301
Query: 350 LVDGADE 356
+ GA+E
Sbjct: 302 ITQGANE 308
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 185/310 (59%), Gaps = 13/310 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + ++ E + L + + PH+LF GP GTGKTT+++A+A +++G +
Sbjct: 14 WIEKYRPQALDEIVGHEGITERLKQYINQQDLPHLLFAGPAGTGKTTSSIAVAKEIYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK+FA + G GY +++I LDEAD++T +
Sbjct: 74 -WRENFLELNASDQRGIDVVRDRIKSFARASFG------GYD---HRVIFLDEADALTSE 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL E + ++ I E
Sbjct: 124 AQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGEAAIEEQIEAIAEAE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + + + L + GD+R+AI LQ AA + G + + + +++ PE +E + +
Sbjct: 184 GIEITDDGMDALVYAAAGDMRKAINGLQAAA-VVGGVVDEEAVYTITSTARPEEIETMVS 242
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A +++ ++ + G ++ Q+ V E D+ + + R+ + + E D
Sbjct: 243 AALDGDFTAARAQLDTLLTDVGIAGGDIIDQMHRSVWEF-DLGEREAVRLMERVGEADYR 301
Query: 350 LVDGADEYLQ 359
+ GA+E +Q
Sbjct: 302 ITAGANEQIQ 311
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 196/335 (58%), Gaps = 30/335 (8%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP ++ ++ ++++ + ++ PHMLFYGPPGTGKT+T LA A +L+
Sbjct: 35 SLPWVEKYRPSRLDELISHKDIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKLY 94
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEAD 165
G + ++S +LELNASDDRGI+VVR +IK FA+ SG +K+IILDEAD
Sbjct: 95 GDK-FRSMILELNASDDRGIDVVREQIKNFASTRKLFSSG----------FKLIILDEAD 143
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT+ AQNALRR +E Y+K RF ICNY+ +II L SRC +FRF PL E +S R+ H
Sbjct: 144 AMTQAAQNALRRVIEQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLEEAQISDRITH 203
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I N+EG+N+ + +SQGD+RRA+ LQ + + T + + + +G P +
Sbjct: 204 IINQEGINITQAGRQAVLKLSQGDMRRALNILQAVHTGYPEA-TEETIYACTGSPCPADI 262
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARI--CKC 342
+ + A + D+ A K V + E G + LLS L VV + + +RI +
Sbjct: 263 DQIVAWLFNMDYTTALKSVKLLKHEKGLALADLLSGL---VVSLAGLELPKVSRIFLMEK 319
Query: 343 LAEVDKCLVDGADEYLQL----------LDVASNV 367
LA+++ + G E +QL +D+A NV
Sbjct: 320 LADIEYNIGVGCSEDIQLGAMVGAFRLSVDMAENV 354
>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
Length = 328
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 191/319 (59%), Gaps = 11/319 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 5 PTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ + S VLE+NASDDRGIN+VR +I +FA + G+ + G +K+IILD
Sbjct: 65 ARKLYTSAQFNSMVLEMNASDDRGINIVRGQILSFA--STGTMYKSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PLS + + R
Sbjct: 117 EADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPR 176
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ I EE LN+ + L ++S GD+R+ + LQ FG ++T +++ S G P
Sbjct: 177 LDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFG-AVTEENVYSCVGHPLP 235
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
++ + + ++L ++ +I + +G +L++L + + E D +
Sbjct: 236 IDIKNIVNWLFNESYELCYCKIQDIKLKKGLALQDILTELHLFINKIE-FPDSILIDLII 294
Query: 342 CLAEVDKCLVDGADEYLQL 360
LAE++K + G E +QL
Sbjct: 295 KLAEIEKRVSIGCSEAVQL 313
>gi|313243384|emb|CBY39995.1| unnamed protein product [Oikopleura dioica]
Length = 270
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 163/264 (61%), Gaps = 2/264 (0%)
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+A +FG L RV ELNASD+RGI VVR K+K FA S QR G CP +K+IIL
Sbjct: 1 MARDMFG-NLASERVCELNASDERGIAVVREKVKNFAMTTANS-QRADGKKCPNFKLIIL 58
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+ AQ ALRRTME YSK TRF +CNY+SRII+P+ SR AKFRF+ L +E+ +
Sbjct: 59 DEADSMTKSAQEALRRTMEVYSKSTRFCLLCNYVSRIIDPITSRTAKFRFRLLPKEIQYN 118
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP 281
++ HI E + + A+ + S++ GD+RRA+ +LQ RL IT D+ V+ + P
Sbjct: 119 QIRHIREAENVQISENAVEEIISVAAGDMRRAVNFLQSLHRLHEDEITPDDVRDVAILCP 178
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
E ++ + RS ++ +V ++ +GYPA + QL D V+ + I D Q+ I
Sbjct: 179 AEKIDEVIREARSKSYENMLTKVQALLQDGYPAGQFMHQLQDAVIADDAIEDFQKVNIIN 238
Query: 342 CLAEVDKCLVDGADEYLQLLDVAS 365
+ + D L DGADE +Q+L + S
Sbjct: 239 QIGKADHALTDGADEKVQILAIVS 262
>gi|146423599|ref|XP_001487726.1| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 180/315 (57%), Gaps = 12/315 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE V L + N PHM+ G PG GKTT+ +A++L G
Sbjct: 11 PWVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLGK 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+Y LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 71 TMYDQATLELNASDDRGIDVVRNKIKQFA-------QTKILLPPGRHKIIILDEADSMTP 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ L+++ + SR+L I
Sbjct: 124 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIAKA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + +++ L L ++GD+R+AI +Q FG + ++ + P V++ +
Sbjct: 184 EDVKYNSQGLQALIFTAEGDMRQAINNMQSTVAGFG-FVDDVNVFKIVDQPHPLVIKKIL 242
Query: 290 AVCRS----GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
C S GD D A + ++++ +GY A +++ F V IS+ ++ I K +
Sbjct: 243 NSCCSNDGKGDIDTALRLLDDLWNKGYSAIDIVTLTFRVAKTLPGISELKRLDIIKEVGL 302
Query: 346 VDKCLVDGADEYLQL 360
V +++G YLQL
Sbjct: 303 VHMRVLEGVSTYLQL 317
>gi|355571949|ref|ZP_09043157.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
gi|354825045|gb|EHF09280.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
Length = 321
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 185/311 (59%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ D+ Q+++V L++ + T N PH+LF G G GKTT A+A+A + F +
Sbjct: 8 WIEKYRPVRLADIVGQDQIVERLSSYVRTGNLPHLLFTGSAGVGKTTAAVALAREFF-KD 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ ELNASD+RGI+VVR +IK FA + G +KI+ LDEAD++T D
Sbjct: 67 SWHMNFRELNASDERGIDVVRNQIKQFARTSPLGG--------AGFKILFLDEADALTPD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME+Y+ RF CNY SRII+P+ SRCA +RF+ LS E ++ +L I E
Sbjct: 119 AQAALRRTMESYASTCRFILSCNYSSRIIDPIQSRCAIYRFRSLSPEAITKEILRIAENE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
L + EA+ + I+QGD+R+AI LQGAA + IT + +++ P+ +E L +
Sbjct: 179 KLTITGEAIDAIIEIAQGDMRKAINALQGAA-ILSPEITGDMVYAITATARPDEIEDLLS 237
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
SGDF+ A ++ ++ + G + L++Q + + D+ ++ + + L D
Sbjct: 238 TSLSGDFEGATAILHRLLNDRGIAPNELINQCYRALTR-RDMEEDMRVALIDQLGTTDFR 296
Query: 350 LVDGADEYLQL 360
L +GA +Q+
Sbjct: 297 LSEGASSDIQM 307
>gi|242010739|ref|XP_002426116.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212510163|gb|EEB13378.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 338
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/273 (44%), Positives = 162/273 (59%), Gaps = 9/273 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP KDV ++ +R L E N P++L GPPG GKTTT L +A L GP
Sbjct: 20 PWIEKYRPVTFKDVVGNDDAIRRLAAFAEVGNVPNILIAGPPGVGKTTTILCLARILLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+ VR KIK FA Q++ P +KII+LDEADSMT+
Sbjct: 80 S-FKEAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPKGKHKIIVLDEADSMTD 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS+ TRF F CN S+IIEPL SRCA RF L +E + ++L IC
Sbjct: 132 GAQQALRRTMEMYSQTTRFAFACNDSSKIIEPLQSRCAVLRFTKLKDEEILKKLLQICES 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++ + L + +QGDLR+A+ LQ F S + S ++ V P ++ +
Sbjct: 192 EQISYTNDGLEAVIFSAQGDLRQALNNLQSTHNGF-SHVNSDNVFKVCDEPHPVMIGEML 250
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLF 322
C +F A K +N++ GY A ++S +F
Sbjct: 251 EHCMKANFQDAYKILNHLWKLGYSAEDIISTIF 283
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 189/319 (59%), Gaps = 11/319 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P++ ++ PWVEKYRPK++ D+ E++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 5 PMISTNLPWVEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ + S VLE+NASDDRGI +VR +I FA+ G+ + G +K+IILD
Sbjct: 65 ARKLYTAGQFNSMVLEMNASDDRGIGIVRGQILNFAST--GTLYKSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PLS + + R
Sbjct: 117 EADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSSDQILPR 176
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ I EE LN+ + L ++S GD+R+ + LQ FG ++T + + + G P
Sbjct: 177 LETIIKEENLNVSEDGKEALIALSGGDMRKVLNVLQSTWLAFG-TVTEETVYTCVGHPLP 235
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
++ + + ++L ++ +I + +G +L+QL V + E D +
Sbjct: 236 IDIKNIVNWLLNESYELCYCKIQDIKLKKGLALQDILTQLHLFVNKIE-FPDSILIELII 294
Query: 342 CLAEVDKCLVDGADEYLQL 360
LAE++K + G E +QL
Sbjct: 295 KLAEIEKRVAIGCSEPVQL 313
>gi|71004420|ref|XP_756876.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
gi|46095885|gb|EAK81118.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
Length = 343
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 188/333 (56%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV ++ + L + NCPH+L G PG GKTT+ L +A L G
Sbjct: 23 PWVEKYRPLRLDDVVGNKDTIDRLKVIQKDGNCPHLLISGLPGIGKTTSVLCLARALLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RG++VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 82 EAYKEGVLELNASDERGVDVVRNKIKTFA-------QKKVSLPPGRHKIIILDEADSMTP 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ + +E + R+L IC
Sbjct: 135 AAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKVRDEHILKRLLEICEM 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L+ + ++GD+R+AI LQ G ++ ++ V P ++ +
Sbjct: 195 ENVEYSDEGLAAIIFTTEGDMRQAINNLQSTWTGLG-FVSPDNVFKVCDQPHPFLIRSIL 253
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ G D A ++++ I ++GY A +++ LF VV + I + + K +
Sbjct: 254 LACKDGHVDEALEKLDEISSKGYAAVDIVTTLFRVVKTLDAIPEATKLDFIKEIGWTHIK 313
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL ++ +C + P +FQ
Sbjct: 314 ILEGVATLVQL----GGLLARLCKLSMHPNQFQ 342
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 195/324 (60%), Gaps = 12/324 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A ++FGP
Sbjct: 24 PWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ +++ VLELNASDDRGI VVR +IK+FA+ +V S +GG+ K+I+LDEAD+MT
Sbjct: 84 Q-FRNSVLELNASDDRGIEVVREQIKSFASTKSVFSS--KGGF-----KLIVLDEADAMT 135
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+ AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + + R+ H+ +
Sbjct: 136 QAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVID 195
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EG + + L +S+GD+RRA+ LQ A +I + + +G P+ VE +
Sbjct: 196 TEGCKITQDGKEALLKLSRGDMRRALNVLQ-ACHAASDNIDETAVYNCTGNPHPQDVEAV 254
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+F A + V+ + A+G + ++S ++D++ T + + + + LA+ +
Sbjct: 255 LKSMMEDEFTTAFRTVSELKTAKGIALADMISGVYDLLA-TIKLPAKSRIYLLDHLADTE 313
Query: 348 KCLVDGADEYLQLLDVASNVIRAV 371
L G E +QL + V AV
Sbjct: 314 HRLSTGGSEKIQLTALLGAVKVAV 337
>gi|311977902|ref|YP_003987022.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|82050828|sp|Q5UQ72.1|RFCS4_MIMIV RecName: Full=Putative replication factor C small subunit L510;
Short=RFC small subunit L510; AltName: Full=Clamp loader
small subunit L510
gi|55417124|gb|AAV50774.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|308204876|gb|ADO18677.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061447|gb|AEJ34751.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|351737669|gb|AEQ60704.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257335|gb|EJN40943.1| putative replication factor C subunit [Acanthamoeba polyphaga
lentillevirus]
Length = 363
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 194/358 (54%), Gaps = 40/358 (11%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRPK+++D+ + ++ + N+ + H LFYGPPGTGKT+ LA+ ++F
Sbjct: 6 SVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIF 65
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E +++RV+E NASDDRGIN VR KI A V + G P YKIIILDEADSM
Sbjct: 66 -KEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK LS+E M ++ I
Sbjct: 125 TDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDIS 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------------------- 265
+E + L L T+ +S GD+R+AI LQ +
Sbjct: 185 LKESMELPKNILHTIIDVSNGDMRKAIMLLQNFKYTYNFKKNLTKKLKDMTLLELKTILF 244
Query: 266 --------SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLAN-KEVNN----IIAEGY 312
S+I+ +D+ +S I + +G+ D N EV+N IIA G+
Sbjct: 245 MTKKSSITSTISEEDVYEISASITLDKAKGII----DDTIDCNNIVEVSNLSKKIIAMGF 300
Query: 313 PASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
P +L+QL ++E+ + Q ++I ++ + + +EY+QLL+ + V R
Sbjct: 301 PIDNILTQLNKCILESNKLDVNQISKIIIYSGDILLKMKECGNEYIQLLNYLAYVNRV 358
>gi|241959612|ref|XP_002422525.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223645870|emb|CAX40533.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 323
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 179/312 (57%), Gaps = 9/312 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+++D+ EE V L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 10 PWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMILSGLPGIGKTTSIHCLAYELLGE 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 70 EYYHQATMELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRQKIIILDEADSMTP 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ LS+E + +R+L I
Sbjct: 123 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKM 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L L ++GD+R+AI LQ F + ++ + P V++ +
Sbjct: 183 EDVQYNTEGLQALVFTAEGDMRQAINNLQSTVAGF-EFVNDVNVFKIVDQPHPLVIQSIL 241
Query: 290 AVC-RSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
C R D D A + ++ + +GY A +++ F V +I+++++ + K +
Sbjct: 242 LSCLRDKDIDKALELLDGLWYKGYSAIDIVTSTFKVAKTIPNINEQKRLDLIKEIGFAHM 301
Query: 349 CLVDGADEYLQL 360
+++G YLQL
Sbjct: 302 RVLEGVATYLQL 313
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 183/324 (56%), Gaps = 14/324 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI V+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGIGVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+S IIEP+ SR RF PL +E + SR+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL + +QGD+R+AI LQ AA + +T +++ G++ P ++ +
Sbjct: 176 EGVKVSDDALEAIYEFTQGDMRKAINALQVAASV-SREVTEEEVAKALGMVSPRLLREVL 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G F+ A ++ + +G L ++ QL V+ D+ + + + +
Sbjct: 235 QEATKGSFNKALTQIYGFVVDGGVGELEIIRQLHREVLRL-DVPEYVKPELVYIVGRAHY 293
Query: 349 CLVDGADEYLQLLDVASNVIRAVC 372
++ GA Q+ + + + V
Sbjct: 294 AILRGARGLAQIYGALAKIRKIVV 317
>gi|363539784|ref|YP_004894673.1| mg622 gene product [Megavirus chiliensis]
gi|350610949|gb|AEQ32393.1| putative replication factor C small subunit [Megavirus chiliensis]
Length = 364
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 187/347 (53%), Gaps = 32/347 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PW+EKYRP+++KD + ++ + N+ H LFYGPPGTGKT+ LA+ ++
Sbjct: 7 NSVPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREI 66
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
F E + +RV+E NASDDRGIN VR KI A V + G P YKIIILDEADS
Sbjct: 67 F-KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADS 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT++AQ+ALR +E YS TRF FICNYIS+I + + SRC FK L + M ++ I
Sbjct: 126 MTDEAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDGCMIDKLKEI 185
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------SSITSKDLISVS 277
+E + L E LST+ +S GD+R+AI LQ L+ ++ +L S+S
Sbjct: 186 STKESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYLYSFKKRKCVDFDKMSIAELKSLS 245
Query: 278 ---------GVIPPEVVEGLFA-VCRSGDFDLANKEVN------------NIIAEGYPAS 315
+I PE + L A + + + + II GYP
Sbjct: 246 FNNLTQSQENIIEPEDIYKLAASITMKQSLKIIHDSIQCKNIIELSDLCKQIITIGYPID 305
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
+L QL ++E+ ++ Q+++I +V + + +EY+QLL+
Sbjct: 306 TILMQLNKAILESNKLNTIQKSKIIINSGDVLLKIKECGNEYIQLLN 352
>gi|406605842|emb|CCH42728.1| Replication factor C subunit 4 [Wickerhamomyces ciferrii]
Length = 324
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/321 (40%), Positives = 182/321 (56%), Gaps = 10/321 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L+ PWVEKYRP +++DV EE + L + N PH++ G PG GKTT+
Sbjct: 1 MSNALKLELPWVEKYRPSKLEDVTGNEETISRLKLISQDGNMPHLIISGLPGIGKTTSIH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G + Y + VLELNASDDRGI+VVR KIK FA Q++ P +KIII
Sbjct: 61 CLAHELLG-DAYSNAVLELNASDDRGIDVVRNKIKQFA-------QKKVSLPQGRHKIII 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E +
Sbjct: 113 LDEADSMTPGAQQALRRTMEIYSNTTRFAFACNVSNKIIEPLQSRCAILRYTKLSDEEVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+L I E + + L L ++GD+R+AI LQ FG + +++ +
Sbjct: 173 KRLLDIIKFEKVEYSNDGLEALIFTAEGDMRQAINNLQSTVAGFG-FVNGENVFKIVDSP 231
Query: 281 PPEVVEGL-FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
P +++ + V ++ D D + +N + +GY A + S F VV +I + + I
Sbjct: 232 HPLIIKKMILEVVQNKDIDKSLFYLNGLWEKGYSAIDIASTSFKVVKNLYEIDESDRLEI 291
Query: 340 CKCLAEVDKCLVDGADEYLQL 360
K + +++G YLQL
Sbjct: 292 MKEIGITHMRVLEGVGSYLQL 312
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 195/327 (59%), Gaps = 21/327 (6%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M LQ S PWVEKYRP + DVA ++++ + PH+L YGPPGTGKT+T L
Sbjct: 1 MTQELQRSGPWVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTIL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKII 159
A+A +L+GP+ +++ +LELNASDDRGI+VVR +I+ FA+ ++ G++ K+I
Sbjct: 61 AVARKLYGPQ-FQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKAN------VKLI 113
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD+MT+DAQ +LRR +E Y+K TRF ICNY+S+II L SRC +FRF PL + +
Sbjct: 114 ILDEADAMTKDAQFSLRRIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHV 173
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
R+ + ++E L++ + LS + +S GD+R+A+ LQ + ++ +T + S +G
Sbjct: 174 RERLEFVIDQERLDVTEDGLSAIVRLSNGDMRKALNILQ-STQMAEPHVTEAAVYSCTGN 232
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE----DISDEQ 335
P+ +E + + + F A +NI+ L L DVV E + IS
Sbjct: 233 PTPKEIEQIASWLLNESFQSA---YSNIVQLKTSKGL---ALVDVVRELQPFIFTISMPG 286
Query: 336 QARI--CKCLAEVDKCLVDGADEYLQL 360
R+ CLA+++ L G +E LQL
Sbjct: 287 NIRVPLINCLADIEYRLASGPNEKLQL 313
>gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
Length = 340
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 181/325 (55%), Gaps = 13/325 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+ +AHQL GP
Sbjct: 20 PWVEKYRPQVLDDVVGNADTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 80 A-YKEGVLELNASDERGIDVVRNKIKNFA-------QKKVTLPPGRHKIIILDEADSMTA 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC
Sbjct: 132 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYGKLKDQEILKRLLEICEA 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L ++GD+R+AI LQ FG ++ ++ V P ++ +
Sbjct: 192 EKVEYNDDGLTALIFTAEGDMRQAINNLQSTWSGFG-FVSGDNVFKVCDQPHPITIQTII 250
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD D A ++ + +GY A ++ LF VV ++I + + K +
Sbjct: 251 RCCLKGDIDGAMVKLTELWDQGYSAVDIVVTLFRVVKNFDEIPEYTKLEYIKEIGFTHMR 310
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM 374
+++G +QL S ++ +C M
Sbjct: 311 ILEGVGTIIQL----SGLLARLCKM 331
>gi|371943985|gb|AEX61813.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701544|gb|AFX92706.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 364
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 187/347 (53%), Gaps = 32/347 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PW+EKYRP+++KD + ++ + N+ H LFYGPPGTGKT+ LA+ ++
Sbjct: 7 NSVPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREI 66
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
F E + +RV+E NASDDRGIN VR KI A V + G P YKIIILDEADS
Sbjct: 67 F-KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADS 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT++AQ+ALR +E YS TRF FICNYIS+I + + SRC FK L +E M ++ I
Sbjct: 126 MTDEAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMIDKLKEI 185
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------SSITSKDLISVS 277
+E + L E LST+ +S GD+R+AI LQ L+ ++ +L S+S
Sbjct: 186 STKESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYLYSFKKRKCVDFDKMSIAELKSLS 245
Query: 278 ---------GVIPPEVVEGLFA-VCRSGDFDLANKEVN------------NIIAEGYPAS 315
+I E + L A + + + + II GYP
Sbjct: 246 FNNLTQSQENIIESEDIYKLAASITMKQSLKIIHDSIQCKNIIELSDLCKQIITIGYPID 305
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
+L QL ++E+ ++ Q+++I +V + + +EY+QLL+
Sbjct: 306 TILMQLNKAILESNKLNTIQKSKIIINSGDVLLKIKECGNEYIQLLN 352
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 186/317 (58%), Gaps = 12/317 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S PWVEKYRP ++ DV E+++ + ++ PH+LFYGPPGTGKT+T LAIA +
Sbjct: 11 KSDLPWVEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLLFYGPPGTGKTSTILAIAKK 70
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G +K VLELNASDDRGI+VVR +IK+FA Q R + +K+IILDEAD
Sbjct: 71 IYGGN-WKRNVLELNASDDRGIDVVRDQIKSFA-------QTRTLF-SDGFKLIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
MT+ AQ ALRR +E Y+ TRF ICNY+++I + SRC +FRF PL + R++
Sbjct: 122 LMTQQAQGALRRIIEHYTPTTRFCIICNYVNKITPAIMSRCTRFRFSPLPYAHLDKRLVE 181
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA-ARLFGSSITSKDLISVSGVIPPEV 284
+ E + +D +A L ++++GD+RRA+ LQ I+ KD+ +V+ PE
Sbjct: 182 VIENEAVQIDDDAKKALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAAPQPEA 241
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+E + + +++ + + G +L+ ++D ++T + + I + L
Sbjct: 242 IEYIVNTLLKDEISTCYSKIHQVKRQNGLALQDILTGVYD-YIQTIEFPTATKVAILELL 300
Query: 344 AEVDKCLVDGADEYLQL 360
AEV+ L G+ E +QL
Sbjct: 301 AEVEHRLSKGSSETIQL 317
>gi|159115639|ref|XP_001708042.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803]
gi|157436151|gb|EDO80368.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803]
Length = 351
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/295 (39%), Positives = 174/295 (58%), Gaps = 22/295 (7%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW EK+RP + + HQ+ VR +E+ N PHML YGP GTGKTT A+ H+ F
Sbjct: 2 SAPWTEKHRPLLLDRIMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEAD 165
GP +++RV E NAS DRGI +VR +IK+ A +AV + YPCP +++IILDEAD
Sbjct: 62 GPRFWRARVSEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T ++Q ALRR +E +S+ TRF ICNY S+II P+ SRCA+F F L ++ R+
Sbjct: 122 ALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPRPLIIDRLES 181
Query: 226 IC----------NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKD 272
IC NE+ + +EAL ++++SQGD+R AIT LQ + ++ K
Sbjct: 182 ICYAEMHQLRNANEKLSSSASEALGEVATLSQGDMRAAITLLQATVQFCQNMEEELSPKH 241
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEV-----NNIIAEGYPASLLLSQLF 322
+ ++G IP E++ L + D L + + +++ GYPA ++ +L+
Sbjct: 242 VHLLAGKIPDELIASLIE--KMTDVSLPVESLIEYLHKSVVRIGYPALDVIRELW 294
>gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
Length = 335
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 181/314 (57%), Gaps = 16/314 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + ++ E V L E N P+++ GPPGTGKTT+ L +AHQL GP
Sbjct: 20 PWLEKYRPQYIHEIVGNMEAVARLQVIAEEGNMPNVILAGPPGTGKTTSILCLAHQLLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 80 T-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTA 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ +S+ + SR+ +C +
Sbjct: 132 GAQQALRRTMEIYSNTTRFALACNQSSKIIEPIQSRCAIVRYSRISDVDILSRLRLVCEK 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + E + L + GD+R+A+ LQ FG I+ +++ V P++V +
Sbjct: 192 EGVTYNDEGMEALIFTADGDMRQALNNLQATHSGFG-FISQENVFKVCDQPHPKLVMSII 250
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C D D A + ++ GY + +++ +F VV DI + + + L EV C
Sbjct: 251 ENCSKADLDAAYAGLKGLVDLGYSSHDIITTVFR-VVRNADIPEFLK---LEYLREVGFC 306
Query: 350 ---LVDGADEYLQL 360
+ +G + LQL
Sbjct: 307 HMRIAEGVNSRLQL 320
>gi|225713814|gb|ACO12753.1| Replication factor C subunit 2 [Lepeophtheirus salmonis]
Length = 325
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 190/333 (57%), Gaps = 14/333 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PW+EKYRPK D+ E V LT N P+++ GPPG GKTTT L +A
Sbjct: 7 RETAPWIEKYRPKTFDDIVGNSETVSRLTTFAHDGNAPNIIISGPPGVGKTTTILCLARA 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G +K VLELNAS++ GI+VVR KIK FA Q++ P +KII+LDEAD
Sbjct: 67 LLGSS-FKEAVLELNASNEGGIDVVRNKIKMFA-------QQKVTLPPGRHKIIVLDEAD 118
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ ALRRTME YS TRF CN ++IEP+ SRCA R+ LS+ + ++VL
Sbjct: 119 SMTEAAQQALRRTMEIYSDTTRFCLACNASEKVIEPIQSRCAMLRYSKLSDAEILAQVLK 178
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+C +E ++ ++ L + +QGD+R+A+ LQ FG I SK++ V P +V
Sbjct: 179 VCEKEDISYTSDGLEAIVFTAQGDMRQALNNLQSTHDGFG-QIDSKNVFKVCDEPHPLLV 237
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ + + C G D A K ++++ GY ++S +F V +T +++ + K + +
Sbjct: 238 KDMLSNCTEGKIDEAYKVLSHLWRLGYSPEDIISNIFR-VCKTHPMAEYLKLEFIKEIGQ 296
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378
+V G++ LQL S ++ +CN+ ++
Sbjct: 297 AHMKIVHGSNSLLQL----SGLLAKLCNVTVKY 325
>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
Length = 348
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/334 (38%), Positives = 187/334 (55%), Gaps = 21/334 (6%)
Query: 32 KSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
K D+ K + S PWVEKYRPK + D+ ++++ +NTL PH+LFYGPP
Sbjct: 10 KEIDQFKSDLERRQFESLPWVEKYRPKSINDLIAHDDIIATKSNTL-----PHLLFYGPP 64
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
GTGKT+T AIA +L+G E Y VLELNASDDRGI+VVR +IKTFA+
Sbjct: 65 GTGKTSTIQAIARKLYG-ENYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNS----- 118
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
PYK+IILDEADSMT AQ ALRR +E Y+K TRF +CNY+ +II L SRC +FRF
Sbjct: 119 -TVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVVKIIPALQSRCTRFRF 177
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271
KPL + R+ I E + +D E + + + GD+R+++ LQ + I +
Sbjct: 178 KPLPDSATEERLKEILKIENVQIDEEGMKAVLFLGDGDMRKSLNILQSVSMSTNGLIGEE 237
Query: 272 DLISVSGVIPPE----VVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVV 326
+ +G P V+E LF + DF A + ++ +G + ++S ++
Sbjct: 238 QIYKCTGNPSPTDFHMVLEWLF----NEDFQTAFNNITDLKKKKGLSLTDIISYFPHFLM 293
Query: 327 ETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
E +D+ + L++++ L +GA E LQL
Sbjct: 294 EMDDMPSILLCKALSHLSDIEFNLSNGASEKLQL 327
>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
Length = 348
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 183/328 (55%), Gaps = 18/328 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ D+ ++++ L N E PH+LF+GPPGTGKT+T +A++ L+G
Sbjct: 8 PWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGS 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-------VGSGQRRGGYPCPPYKIIILD 162
+ S V+ELNASD+RGI VR +IKTFA + VGS P K+IILD
Sbjct: 68 HRH-SYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSG----PRTNLKLIILD 122
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD MT AQN+LRR ME YS RF ICN+++RII P+ SRC FRF PL +V+ R
Sbjct: 123 EADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRR 182
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----ITSKDLISVSG 278
I EGL + AL TL+ I QGD+RR + LQ A G++ ITS +IS +G
Sbjct: 183 TADIAKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAG 242
Query: 279 VIPPEVVEGLFAVCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
+ P + L F D + V +GY L++ L+ ++ D +
Sbjct: 243 LPNPTEISKLLQRLMQESFKDCVDYVVTLNQVQGYSVEDLVTALYRSILRI-DWPNVVIV 301
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVAS 365
++ L ++++ L GA Y+Q+ + S
Sbjct: 302 QLLIRLGDIEQRLSAGASPYIQIASLVS 329
>gi|68473223|ref|XP_719417.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|46441233|gb|EAL00532.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|238880430|gb|EEQ44068.1| activator 1 37 kDa subunit [Candida albicans WO-1]
Length = 323
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 179/312 (57%), Gaps = 9/312 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+++D+ EE V L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 10 PWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGD 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 70 EHYHQATMELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRQKIIILDEADSMTP 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRT+E YS TRF F CN S+IIEPL SRCA R+ LS+E + +R+L I
Sbjct: 123 GAQQALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKM 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L L ++GD+R+AI LQ FG + ++ + P V++ +
Sbjct: 183 EDVKYNTEGLQALIFTAEGDMRQAINNLQSTVAGFG-FVNDVNVFKIVDQPHPLVIQSIL 241
Query: 290 AVC-RSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
C + D D A ++ + +GY A +++ F V +IS++++ + K +
Sbjct: 242 LSCLKDKDIDKALGLLDGLWYKGYSAIDIVTSTFKVAKTIPNISEQKRLDVIKEIGFAHM 301
Query: 349 CLVDGADEYLQL 360
+++G YLQL
Sbjct: 302 RVLEGVATYLQL 313
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 192/324 (59%), Gaps = 12/324 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A ++FGP
Sbjct: 23 PWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ +++ VLELNASDDRGI+VVR +IK+FA+ +V S +GG+ K+I+LDEAD+MT
Sbjct: 83 Q-FRNSVLELNASDDRGIDVVREQIKSFASTKSVFSS--KGGF-----KLIVLDEADAMT 134
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+ AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + + R+ H+
Sbjct: 135 QAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIE 194
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EG N+ + L +S+GD+RRA+ LQ A I + + +G P +E +
Sbjct: 195 SEGCNITQDGKEALLKLSRGDMRRALNVLQ-ACHAASDHIDETAVYNCTGNPHPHDIEAI 253
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+F A V+ + A+G + +++ +D++ T + + + + LA+ +
Sbjct: 254 LKSMMEDEFTTAFWTVSQLKTAKGIALADIITGFYDLLT-TIKLPAKSRIYLLDHLADTE 312
Query: 348 KCLVDGADEYLQLLDVASNVIRAV 371
L G E +QL + V AV
Sbjct: 313 HRLSTGGSEKIQLTALLGAVKVAV 336
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 194/315 (61%), Gaps = 16/315 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
Q W+EKYRP + +V QE V L N ++ ++ PH+LF GP G GKTT+ALA+A ++FG
Sbjct: 3 QIWIEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLLFAGPAGIGKTTSALALAREMFG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
EL++ + ELNASD+RGI+VVR KIK FA A G++ +KII LDEAD++T
Sbjct: 63 -ELWQHNLHELNASDERGIDVVRGKIKEFARTA-PLGEK-------GFKIIFLDEADALT 113
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRRTME YS+ RF CNY S+II+P+ SRCA FRF+P+ E + + + +
Sbjct: 114 GAAQAALRRTMEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAEDLEKYLKFVAS 173
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI--SVSGVIPPEVVE 286
+E + + EA +L+ ++QGDLRRAI LQ AA + + D++ +V+ P EV +
Sbjct: 174 KENVKVTKEAFESLTYLAQGDLRRAINGLQMAAA--AKTEVTPDVVYQAVAAARPEEVKD 231
Query: 287 GLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
L + +G+F A ++++ + I G +L Q+ V + E I D + + + +AE
Sbjct: 232 ALESAL-AGNFSTAREKLDTLQITYGLAGEDVLRQMHRTVRDLE-IPDNIKVLMIEKMAE 289
Query: 346 VDKCLVDGADEYLQL 360
D L +GA+ +Q+
Sbjct: 290 ADFRLSEGANSRIQI 304
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 182/307 (59%), Gaps = 13/307 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + +V E +V L + + + PH+LF GP G GKTT+A+AIA +++G +
Sbjct: 15 WIEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSAMAIAREVYGDD 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA + G GY Y+II LDEAD++T D
Sbjct: 75 -WRENFLELNASDERGIDVVRDRIKDFARTSFG------GYD---YRIIFLDEADALTSD 124
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME ++ TRF CNY S+II+P+ SRCA FRF PL+EE + V + E
Sbjct: 125 AQSALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYVRQVAERE 184
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + + + L + GD+R+A+ LQ AA G ++ + + ++ PE +E +
Sbjct: 185 GIEVTDDGVDALVYAADGDMRKALNGLQAAATTEG-AVDDEAVYGITATARPEEIEAMVE 243
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A ++++++ + G ++ QL + D+ D R+ + + E D
Sbjct: 244 RALDGDFTAARAKLDDLLTDAGLGGGDVIDQLHRSAW-SFDLDDAATVRLLERVGETDYR 302
Query: 350 LVDGADE 356
+ GA+E
Sbjct: 303 ITQGANE 309
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 187/333 (56%), Gaps = 9/333 (2%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ SQPWVEKYRP+ + DV V+ L N P+++ GPPG GKTT+ LA+ H
Sbjct: 1 MSQSQPWVEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNLILTGPPGCGKTTSLLALCH 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
QL G + K V+ELNASDDRGI+VVR IK FA +R P +K+++LDE+
Sbjct: 61 QLLGDK-EKDAVIELNASDDRGIDVVRKNIKEFA-------KRHVALPEGRHKVVLLDES 112
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT+ AQ A+RR ME Y+K TRF F CN ++IEP+ SRCA RF + E +++R++
Sbjct: 113 DSMTDAAQQAMRRIMENYTKTTRFVFACNQSEKVIEPIQSRCAIVRFSRVEENEIAARLM 172
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
IC EG ++E ++TL+ ++ GD+R AI LQ +G +T +++++ + P
Sbjct: 173 KICELEGFKPESEGIATLARLADGDMRTAINGLQSTYVRYG-LVTQENVLATVDIPNPTA 231
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ +F + +F A +N + G+ S ++ LF V T+ I ++ + + K +
Sbjct: 232 IADIFTALSTDNFRNALIILNGLEKRGHSPSDIVKSLFSFVRRTDTIQEKLKLNLLKEIG 291
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRAVCNMPEE 377
+ G LQL + + + + P++
Sbjct: 292 LAQMRVSQGMSSNLQLDGLLATLFKVYHQAPQQ 324
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 185/311 (59%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + DVA +++ L + +E + P++LF G G GKTT A+AIA +L+G +
Sbjct: 16 WVEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKELYG-D 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++S LELNASD+RGI+VVR +IK FA R ++II LDEADS+T D
Sbjct: 75 SWQSHFLELNASDERGIDVVRDQIKNFA---------RHDPGAVDFQIIFLDEADSLTSD 125
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME +S TRF CNY S+II+P+ SRCA FRF P+ ++ ++ V ++ +EE
Sbjct: 126 AQAALRRTMEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAVAGYVQYVADEE 185
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + + L + GD+R+AI LQ AA + G + + + ++ PE ++ +
Sbjct: 186 GIETTDDGIEALVYAADGDMRKAINALQAAA-VMGEQVDEESVFVITSTARPEDIKEMVR 244
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF + ++ ++ E G ++ QL + E D+ D+ R+ + + E D
Sbjct: 245 HAIDGDFTRSRSILDELLTERGMAGGDIIDQLHRSIWEF-DLDDDDAVRVLERVGEADFR 303
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 304 ITEGANERVQL 314
>gi|380013855|ref|XP_003690961.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 2-like
[Apis florea]
Length = 351
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 179/311 (57%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ D+ E+ V L+ + NCP+++ GPPG GKTTT L +A L GP
Sbjct: 38 PWIEKYRPQIFSDIVGNEDTVSRLSVFAQQGNCPNIIIAGPPGVGKTTTILCLARILLGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++K VLELNAS+DRGI+VVR KIK FA Q+R P +KIIILDEADSMT
Sbjct: 98 -IFKEAVLELNASNDRGIDVVRNKIKMFA-------QKRVNLPKGKHKIIILDEADSMTS 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ LS+ + ++++ IC +
Sbjct: 150 GAQQALRRTMEIYSNTTRFALACNSSDKIIEPIQSRCAMLRYGKLSDAQILAKIIDICKK 209
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++ + L + +QGD+R+A+ LQ F + + S+++ V P +V+ +
Sbjct: 210 EDVSHTDDGLEAIVFTAQGDMRQALNNLQSTHNGF-NHVNSENVFKVCDEPHPLLVKEML 268
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ G+ A + ++ GY A +++ +F V + I + + K +
Sbjct: 269 EFCKEGNISKAYGVMEHLWKMGYSAEDIINNIFK-VAKNLLIDETLKLDFVKEIGITHLG 327
Query: 350 LVDGADEYLQL 360
+VDG + LQ+
Sbjct: 328 IVDGVNSLLQM 338
>gi|308487512|ref|XP_003105951.1| CRE-RFC-4 protein [Caenorhabditis remanei]
gi|308254525|gb|EFO98477.1| CRE-RFC-4 protein [Caenorhabditis remanei]
Length = 362
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 144/227 (63%), Gaps = 11/227 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+AHQ+EVV +L L+ + PH+LFYGPPGTGKT+TALA QLF
Sbjct: 17 WTEKYRPKTLDDIAHQDEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCRQLFPRN 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP-------CP----PYKII 159
+++ RVL+LNASD+RGI+VVR K+ F + + + C KII
Sbjct: 77 IFQDRVLDLNASDERGISVVRQKVSRFIVLLSNHSLQIQSFSKTTLSTNCKEDVLKLKII 136
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L EV
Sbjct: 137 ILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPSEVQ 196
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
R+ IC+ E + + L + S+GDLRRA+ LQ A + S
Sbjct: 197 VQRLRTICDAEETPMSNDELMQVMEYSEGDLRRAVCTLQSLAPILRS 243
>gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 368
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 129/349 (36%), Positives = 192/349 (55%), Gaps = 41/349 (11%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ S PWVEKYRPK +K++ E+++ +T ++ + PH+LFYGPPGTGKT+T A+A
Sbjct: 17 IHDSLPWVEKYRPKSLKELISHEDIIDTITKLIDKNSLPHLLFYGPPGTGKTSTIQAVAR 76
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+L+G Y VLELNASDDRGI+VVR +IK+FA GS G + +K+IILDEA
Sbjct: 77 KLYGDN-YSRMVLELNASDDRGIDVVREQIKSFA----GS---MGIFNTNQFKLIILDEA 128
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT AQ ALRR +ETY+K TRF ICNY+ ++I L SRC +FRF L + R+
Sbjct: 129 DSMTNAAQTALRRVIETYTKTTRFCMICNYVGKLIPALQSRCTRFRFGRLGKPQSIKRIK 188
Query: 225 HICNEEG------------------------------LNLDAEALSTLSSISQGDLRRAI 254
I +E +N+ EA++++ +++GD+R+++
Sbjct: 189 EIVEQEKYDIIMTDKLPINIFQTHTDCPPIHSNVMFRMNISDEAITSIELLAEGDMRKSL 248
Query: 255 TYLQGAARLF--GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-G 311
LQ + G IT D+ +GV + C DFD A K ++N+ E G
Sbjct: 249 NLLQSVSMSSDDGVQITDADIYRCAGVPSKRETVQILQWCIGEDFDEAYKNLSNMKKEKG 308
Query: 312 YPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+ ++ + ++ + ++ + I K LAE++ L GA E LQL
Sbjct: 309 FSLVDIIKDVSVLIHKARNMDERAITSISKELAEIEYNLSFGASEKLQL 357
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 198/328 (60%), Gaps = 14/328 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ Q+++V + +E PH+LFYGPPGTGKTTT +A+A L+G
Sbjct: 22 PWVEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLLFYGPPGTGKTTTIMAVAKMLYGS 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGINVVR +IK FA G ++ + K++ILDEAD+MT
Sbjct: 82 S-HSSMVLELNASDDRGINVVREQIKVFA------GTKKLFHT--GVKLVILDEADNMTN 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E YS+ TRF ICNY+S II + SRC +FRF+PL+ +++ SR+L+I +
Sbjct: 133 AAQFALRRIIEKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNPQLIRSRLLYILRQ 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + D + ++ L ++S+GD+RR I LQ A FG +T++ + +G+ P +E +
Sbjct: 193 ENVEFDDDGVAALLALSRGDMRRVINVLQATAMAFG-KVTAEHVYRCAGMPSPADMELVL 251
Query: 290 AVCRSGDFDLANKEVNNIIAEG-YPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ + + A K + + + + S +L++L + E A + + LA+++
Sbjct: 252 SSLMAKSYGDALKTLEELQRKKMFAMSDILTELVGKLQEVS-FPPAVDAFLYRELADLEV 310
Query: 349 CLVDGADEYLQLLDVAS--NVIRAVCNM 374
L G E +QL + +R++C++
Sbjct: 311 RLNAGTQEEIQLRSLVGIFTKVRSMCSL 338
>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Methanoregula boonei 6A8]
gi|166225154|sp|A7I8Y0.1|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
Length = 322
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 189/316 (59%), Gaps = 12/316 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S W+EKYRP ++ D+ Q+++V L++ +++ N PH+LF G G GKTT A+ +A +
Sbjct: 3 ESHTIWIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLARE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
FG + ++ ELNASD+RGI+VVR +IK FA R G +KI+ LDEAD
Sbjct: 63 FFG-DSWQMNFRELNASDERGIDVVRNQIKEFART------RPAGDAA--FKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T DAQ ALRRTME+Y+K RF CNY S+II+P+ SRCA +RF+PL + + +
Sbjct: 114 ALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I E L++ EA+ + I+QGD+R+AI LQGAA + ++I + + +++ PE +
Sbjct: 174 IAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAA-ILSATIEAPMVYAITSNARPEEI 232
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
L + SGDFD A + ++ E G + L++Q + + + D+ + + L
Sbjct: 233 GELLTLSLSGDFDGAEALLTRLLRERGIAPNELINQCYRALTK-RDMDRVLKVELIDALG 291
Query: 345 EVDKCLVDGADEYLQL 360
E D L +GA +Q+
Sbjct: 292 ETDFRLSEGASSDIQM 307
>gi|164659418|ref|XP_001730833.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
gi|159104731|gb|EDP43619.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
Length = 371
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 181/322 (56%), Gaps = 9/322 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ ++DV V L E NCPH+L G PG GKTT+ +AH L G
Sbjct: 16 PWVEKYRPRYLRDVVGNSATVERLRAIEEHGNCPHLLLSGLPGIGKTTSVHCLAHALLG- 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASDDRGI+VVR+KIK FA Q++ P +KII+LDEADSMT
Sbjct: 75 DAYKEAVLELNASDDRGIDVVRSKIKAFA-------QKKVSLPPGRHKIIVLDEADSMTP 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME Y+ TRF F CN ++IIEP+ SRCA RF +S+E + R+L IC
Sbjct: 128 GAQQALRRTMEIYAPTTRFCFACNQSNKIIEPIQSRCAILRFGRISDEELLRRLLQICEA 187
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L+ + ++GD+R+A+ LQ G ++ ++ V P VV +
Sbjct: 188 EHVKYSDEGLAAVVFTAEGDMRQAVNNLQSTWTGMG-YVSPDNVFKVCDQPHPLVVRDVL 246
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C +G D A ++ ++ + GY + +++ LF VV + + + + + +
Sbjct: 247 DKCYAGRVDSALDQLESLWSLGYSSLDIVTTLFRVVRTMDSLPEAVKLEYIREIGWTHMR 306
Query: 350 LVDGADEYLQLLDVASNVIRAV 371
++G LQL + + + + V
Sbjct: 307 TLEGVATLLQLSALVARLAKLV 328
>gi|116753581|ref|YP_842699.1| replication factor C small subunit [Methanosaeta thermophila PT]
gi|116665032|gb|ABK14059.1| replication factor C small subunit [Methanosaeta thermophila PT]
Length = 305
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 183/296 (61%), Gaps = 12/296 (4%)
Query: 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125
Q E+VR L + + T N PH+LF GPPG GKT A++I ++FG E ++ +ELNASD+R
Sbjct: 3 QPEIVRRLKSYVATRNLPHLLFSGPPGVGKTAAAISIVREIFG-EGWRDNFIELNASDER 61
Query: 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185
GI+VVRTK+K FA +A G +K+I LDEAD++T DAQ+ALRRTME YS
Sbjct: 62 GIDVVRTKVKDFARMAPLGG--------AEFKVIFLDEADALTSDAQSALRRTMERYSAT 113
Query: 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI 245
RF CNY S+IIEP+ SRCA +RF+ L+ + + R+ +I +EG+ + + + ++ +
Sbjct: 114 CRFILSCNYSSKIIEPIQSRCAVYRFRALTPDAIEKRIRYIAEQEGVEVTEDGIEAINYV 173
Query: 246 SQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVN 305
++GD+R+AI LQ AA L + + ++ + PE + L + SGDF A E++
Sbjct: 174 ARGDMRKAINALQAAA-LISDKVDMNTIYQITSMARPEQIRNLIKMAISGDFAGARNELD 232
Query: 306 N-IIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+ ++ +G ++ Q+ +++ D+ D + R+ + E+D + +GA+E +QL
Sbjct: 233 DLLLVQGLSGQDVVVQIHREMLDL-DVPDADKVRMINRIGEIDFRITEGANERIQL 287
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 184/316 (58%), Gaps = 17/316 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ QE ++ L +E + P+++F GP G GKTTTALA+A ++ G
Sbjct: 4 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEERSMPNLMFTGPAGVGKTTTALALAREILG- 62
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD RGI+ VRT IK F + VG+ P++II LDE D+MT
Sbjct: 63 EYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGA----------PFRIIFLDEVDNMT 112
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRR ME Y+K + F CNY S+II+P+ SRCA FRF PL + SR+ +I
Sbjct: 113 KDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHIISRLEYIAE 172
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
+EGL + +AL T+ ++GDLR+AI LQ AA L G IT + V P+ V +
Sbjct: 173 QEGLEYEPQALDTVVYFAEGDLRKAINILQSAASL-GEKITESSIYEVVSRARPKDVRKM 231
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETE---DISDEQQARICKCLA 344
G F A + I + +G +++Q++ + I E+ ++ + +
Sbjct: 232 IMTILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGSIEGERYIKLIEAVG 291
Query: 345 EVDKCLVDGADEYLQL 360
E D + +GA+ +QL
Sbjct: 292 EYDFRIREGANPRIQL 307
>gi|392571020|gb|EIW64192.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 345
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 184/333 (55%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 25 PWVEKYRPQVLDDVVGNTDTIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK+FA Q++ P +KI+ILDEADSMT
Sbjct: 84 DGYKEGVLELNASDERGIDVVRNKIKSFA-------QKKVTLPPGRHKIVILDEADSMTA 136
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC
Sbjct: 137 GAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDQEVLKRLLEICEM 196
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 197 EKVEYSNEGLEALIFTAEGDMRQAINNLQSTWSGFG-FVSGDNVFKVCDQPHPITVQAMI 255
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD + A +++ + +GY A ++ +F VV ++I + + K +
Sbjct: 256 RACLKGDIEGAMDKLDELWDQGYSAVDIVVTVFRVVKTFDEIPEYTKLEYIKEIGWTHMR 315
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL ++ +C M PE F+
Sbjct: 316 ILEGVGTLIQL----GGLMARLCKMNHKPEHFR 344
>gi|348679159|gb|EGZ18976.1| hypothetical protein PHYSODRAFT_332696 [Phytophthora sojae]
Length = 326
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 173/311 (55%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + V L + N +++ GPPGTGKTT+ L +A +L G
Sbjct: 8 PWVEKYRPRVLADVVGNRDTVASLQAMAQAGNMTNLILSGPPGTGKTTSILCLARELLGA 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNASDDRGI+ VR+KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 68 SM-KQAVLELNASDDRGIDTVRSKIKMFA-------QQKVTLPPGRHKIVILDEADSMTA 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L +E++ R+L +C E
Sbjct: 120 AAQQALRRTMEIFSATTRFALACNNSTKIIEPIQSRCAILRYTRLPDEMLLRRLLTVCQE 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L+ L ++GD+R A+ LQ A FG ++ +++ V P VV +
Sbjct: 180 EKVGYKEEGLAALIFTAEGDMRNALNNLQATASGFG-FVSDENVFKVCDQPHPAVVREIL 238
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A K+ + GY + ++ +F V ++ + K + C
Sbjct: 239 NQCAKGELDGAEKQAVELWKSGYSSLDIIGTIFRVCKALPMEDEKLKLEFIKLIGATHMC 298
Query: 350 LVDGADEYLQL 360
+ DG LQ+
Sbjct: 299 IADGVSTLLQI 309
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 182/316 (57%), Gaps = 19/316 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPKQ+ ++ ++++ + ++ PH+LFYGPPGTGKT+T LA+A Q++ P
Sbjct: 17 PWVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTSTILAVAKQIYSP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR +I +FA+ SG YKI+ILDEAD+M
Sbjct: 77 KEFNSMVLELNASDDRGIGIVRGQILSFASTRTIFKSG----------YKIVILDEADAM 126
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL + M R+ H+
Sbjct: 127 TRDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQHVI 186
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E N+ + + L +++ GD+R+A+ LQ + + + ++ + G +E
Sbjct: 187 QQEQCNVTEDGMKALVTLANGDMRKALNILQ-STHMAHDVVNEDNVYTCVGHPLRRDIEN 245
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV---VETEDISDEQQARICKCLA 344
+ + +F A NNI+ L L + V V D+ + + +A
Sbjct: 246 IINWVLNENFTSA---YNNILEMKTEKGLALQDILTEVHTYVHRLDLPINVKIHLLDKMA 302
Query: 345 EVDKCLVDGADEYLQL 360
EV+ L G +E +QL
Sbjct: 303 EVEHRLASGTNEKIQL 318
>gi|350401447|ref|XP_003486155.1| PREDICTED: replication factor C subunit 2-like [Bombus impatiens]
Length = 351
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 185/334 (55%), Gaps = 10/334 (2%)
Query: 27 QSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHML 86
++ P S +K K ++ PW+EKYRP+ D+ E+ V L+ E NCP+++
Sbjct: 14 EAVPSTSGYNIKNKEKDKKSANLPWIEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNII 73
Query: 87 FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
GPPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA Q
Sbjct: 74 IAGPPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA-------Q 125
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+R +KIIILDEADSMT+ AQ ALRRTME YS TRF CN +IIEP+ SRC
Sbjct: 126 KRVNLAKGKHKIIILDEADSMTDGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRC 185
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
A R+ LS+ + ++++ +C +E ++ + L + +QGD+R+A+ LQ FG
Sbjct: 186 AMLRYGKLSDAQILAKIIEVCQKEDVSHTDDGLEAIVFTAQGDMRQALNNLQSTYNGFG- 244
Query: 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVV 326
+ S+++ V P +V+ + +C G A + ++ GY A L+S +F V
Sbjct: 245 HVNSENVFKVCDEPHPLLVKEMLELCAQGKISKAYGIMEHLWKMGYSAEDLISNIFRVCT 304
Query: 327 ETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
I + + K + +VDG + LQ+
Sbjct: 305 NL-SIEEPLKLDFIKEIGITHLGIVDGINSLLQM 337
>gi|429191613|ref|YP_007177291.1| DNA polymerase III, subunit gamma/tau [Natronobacterium gregoryi
SP2]
gi|448325250|ref|ZP_21514645.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
gi|429135831|gb|AFZ72842.1| DNA polymerase III, gamma/tau subunit [Natronobacterium gregoryi
SP2]
gi|445616034|gb|ELY69670.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
Length = 330
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 185/319 (57%), Gaps = 13/319 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E + PH++F GP G GKT +A AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGVGKTASAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++G + +K LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYGDD-WKENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L ++ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELGDDAVETQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ I E + L + L + GD+R+AI LQ AA + G + + + +++ P
Sbjct: 181 IREIAATETIELTDNGVDALVYAADGDMRKAINGLQAAA-VMGEVVDEETVFAITSTARP 239
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICK 341
E VE + GDF A + +++ + G ++ QL E DI + R+ +
Sbjct: 240 EEVEEMVEHAIDGDFTAARAALEDLLMDRGLAGGDVIDQLHRSAWEF-DIPERATVRLLE 298
Query: 342 CLAEVDKCLVDGADEYLQL 360
L EVD + +GA+E LQL
Sbjct: 299 RLGEVDYRITEGANERLQL 317
>gi|290986773|ref|XP_002676098.1| predicted protein [Naegleria gruberi]
gi|284089698|gb|EFC43354.1| predicted protein [Naegleria gruberi]
Length = 337
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 177/313 (56%), Gaps = 9/313 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVE+YRP + D+ EE V L E N P+++ GPPGTGKTT+ + +A L G
Sbjct: 17 RPWVERYRPIDMDDIVGNEEAVMRLRVIAEEGNMPNLILSGPPGTGKTTSIMCLARSLLG 76
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E+YK VLELNASD+R ++VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 77 KEVYKEAVLELNASDERTLDVVRNKIKQFA-------QKKVNLPPNRHKIVILDEADSMT 129
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ A+RR ME YS TRF CN S+IIEP+ SRCA R+K L++ + +R++ IC
Sbjct: 130 SAAQQAMRRIMEIYSSTTRFALACNDSSKIIEPIQSRCALVRYKRLTDAELLTRLIVICE 189
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E + + L ++ S GD+R AI LQ + FG + + ++ V P ++ +
Sbjct: 190 LEHVQKTEDGLESILYTSDGDMRNAINSLQATYQGFG-IVNATNVFKVCDQPHPVAIQTI 248
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVD 347
C GD + KE+ ++ EGY + ++S L VV + + Q + K + +
Sbjct: 249 IGSCIQGDLMSSQKELTKLMGEGYSSQDVISTLSKVVRSGAVQMPEYAQLQFIKEIGDCH 308
Query: 348 KCLVDGADEYLQL 360
+ DG D LQL
Sbjct: 309 LRISDGVDTPLQL 321
>gi|339264352|ref|XP_003366698.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
gi|316956812|gb|EFV46929.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
Length = 235
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 143/219 (65%), Gaps = 10/219 (4%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
LFYGPPGTGKT+ LA+ Q+FG E+Y+ RVLELNASD+RGI+V+R K+K F+ A S
Sbjct: 5 LFYGPPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQFA-ASE 63
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
GG CPP K++ILDEADSMT+ AQ ALRRTME SK TRF ICNYIS IIEP+ SR
Sbjct: 64 ITEGGKKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIEPITSR 123
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
CAKFRFKPL+ E+ R+ IC E +++D ALS+L S GDLRRAI LQ AA
Sbjct: 124 CAKFRFKPLTLEIQIERLRKICENESVSIDDAALSSLISFCDGDLRRAINTLQSAA---- 179
Query: 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV 304
S K I ++P E+ L +G + V
Sbjct: 180 -SFKDKKEI----IVPEELSSNLLQFVANGSMKIWKARV 213
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 193/320 (60%), Gaps = 11/320 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP+ + PWVEKYRP+++ D+ ++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 7 APLQTRNLPWVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILA 66
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++IL
Sbjct: 67 CARQLYRDKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVIL 118
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS + M
Sbjct: 119 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMVP 178
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP 281
R+ H+ +E +++ + + + ++S GD+RR++ LQ + +G +T + + +G
Sbjct: 179 RLEHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHPL 237
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
+ + + DF A +++ + +G +L+++ +++ D + +
Sbjct: 238 RSDIANILDWALNKDFTTAYRQILELKTLKGLALHDILTEVH-LLIHRVDFPPNIRIGLL 296
Query: 341 KCLAEVDKCLVDGADEYLQL 360
LA+V+ L G DE +QL
Sbjct: 297 IKLADVEHRLASGTDEKIQL 316
>gi|340729148|ref|XP_003402870.1| PREDICTED: replication factor C subunit 2-like [Bombus terrestris]
Length = 351
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 184/331 (55%), Gaps = 10/331 (3%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S +K K S+ PW+EKYRP+ D+ E+ V L+ E NCP+++ G
Sbjct: 17 PSTSGYNIKNKEKDKKSSNLPWIEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAG 76
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP ++K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 77 PPGVGKTTTILCLARILLGP-VFKEAVLELNASNERGIDVVRNKIKMFA-------QKKV 128
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
+KIIILDEADSMT+ AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 129 NLAKGKHKIIILDEADSMTDGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAML 188
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
R+ LS+ + ++++ +C +E ++ + L + +QGD+R+A+ LQ FG +
Sbjct: 189 RYGKLSDAQILAKIIEVCQKEDVSHTDDGLEAIVFTAQGDMRQALNNLQSTYNGFG-HVN 247
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
S+++ V P +V+ + +C G A + ++ GY A L+S +F V
Sbjct: 248 SENVFKVCDEPHPLLVKEMLELCAQGKISKAYGIMEHLWKMGYSAEDLVSNIFRVCTNL- 306
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQL 360
I + + K + +VDG + LQ+
Sbjct: 307 SIEEPLKLDFIKEIGITHLGIVDGINSLLQM 337
>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 180/314 (57%), Gaps = 8/314 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A+ L
Sbjct: 16 STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP----YKIIILD 162
FG + ++ VLE+NASDDRGI+VVR +++ F++ S P P +K++ILD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFSST---SSFYFASAPAAPTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD M+ DAQ ALRR +E Y+K RF +CN+I++II L SRC +FRF P+ + M R
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLPR 192
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ + EEG+ E L +S GDLRR + +Q +A + IT + + V+G P
Sbjct: 193 LKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTMQASA-MSAGEITEESVYRVTGNPTP 251
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
V G+ + DF + ++V ++E +S L + +V D+ E + +
Sbjct: 252 ADVRGIVEDMIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMK 311
Query: 343 LAEVDKCLVDGADE 356
LA+V+ GA E
Sbjct: 312 LADVEYYAAGGAKE 325
>gi|336377010|gb|EGO05345.1| hypothetical protein SERLA73DRAFT_174456 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390053|gb|EGO31196.1| hypothetical protein SERLADRAFT_455984 [Serpula lacrymans var.
lacrymans S7.9]
Length = 343
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 187/331 (56%), Gaps = 12/331 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L + NCPH++ G PG GKTT+ +AHQL G
Sbjct: 23 PWVEKYRPQNLDDVVGNVDTIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPARHKIVILDEADSMTP 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L + + R+L IC
Sbjct: 135 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEM 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L +GD+R+AI LQ FG ++ +++ V P +V+ +
Sbjct: 195 EKVEYNDDGLTALIFTCEGDMRQAINNLQSTHSGFG-FVSGENVFKVCDQPHPVIVQSII 253
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD D A ++N + +GY A ++ +F VV +++ + + K +
Sbjct: 254 RACLKGDIDGAMGKLNELWEQGYSAVDIVVTVFRVVKTFDELPEYTKLEYIKEIGFTHMR 313
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
+++G +QL + + + + NM PE F+
Sbjct: 314 ILEGVGTIIQLGGLVARLCKL--NMKPELFR 342
>gi|170027981|ref|XP_001841875.1| replication factor C subunit 2 [Culex quinquefasciatus]
gi|167868345|gb|EDS31728.1| replication factor C subunit 2 [Culex quinquefasciatus]
Length = 344
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 193/338 (57%), Gaps = 22/338 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+++ PW+EKYRP++ +++ E+ V L N P+++ GPPG GKTTT L +A
Sbjct: 25 KANLPWIEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGVGKTTTILCLARI 84
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G E ++ VLELNAS++RGI+VVR KIK FA Q++ P +KI+ILDEAD
Sbjct: 85 LLG-ENFREAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPRGRHKIVILDEAD 136
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ LS+ + ++++
Sbjct: 137 SMTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRYSKLSDSQVLAKLIE 196
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
IC +E L+ D + L + +QGD+R+A+ LQ A FG I+ ++ V P +V
Sbjct: 197 ICQKEALSYDEDGLEAIVFTAQGDMRQALNNLQSTANGFG-HISGANVFKVCDEPHPMLV 255
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC--KCL 343
+ + C GD A K + + GY A ++ +F V + ++ ++ ++C + +
Sbjct: 256 QDMLEHCVKGDVHKAYKIMAKLWRLGYAAEDIIGNIFRV---CKRMNMNEKLKLCFIREI 312
Query: 344 AEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
E +VDG + LQ+ S ++ +C E YD
Sbjct: 313 GETHMKIVDGLNSLLQM----SGLLAKLC----EVSYD 342
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 180/321 (56%), Gaps = 15/321 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC-PPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A P P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTA----------PIKAPFKLVILDEADNMTS 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+S IIEP+ SR RF PL ++ + +R+ +I
Sbjct: 115 DAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAEN 174
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ +AL T+ +QGD+R+AI LQ AA IT + + G++ P+++
Sbjct: 175 EGIKASDDALETIFEFTQGDMRKAINALQIAAAT-SREITEETVAKALGLVSPKLLRETL 233
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G F A ++ + +G L +L Q+ V+ D+ + + + +AE
Sbjct: 234 HEAVRGSFSKAMTQIYGFVVDGGVGELEILKQIHREVLRL-DVPEYVKPDLAYIVAEAHY 292
Query: 349 CLVDGADEYLQLLDVASNVIR 369
+ GA Q+ + V R
Sbjct: 293 ATLRGARGLAQIYGALAKVRR 313
>gi|66513962|ref|XP_623937.1| PREDICTED: replication factor C subunit 2 [Apis mellifera]
Length = 350
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 183/331 (55%), Gaps = 10/331 (3%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S VK K PW+EKYRP+ D+ E+ V L+ + NCP+++ G
Sbjct: 17 PSTSGYNVKNKEKDKKLDHLPWIEKYRPQVFSDIVGNEDTVSRLSVFAQQGNCPNIIIAG 76
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP ++K VLELNAS+DRGI+VVR KIK FA Q+R
Sbjct: 77 PPGVGKTTTILCLARILLGP-IFKEAVLELNASNDRGIDVVRNKIKMFA-------QKRV 128
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KIIILDEADSMT AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 129 NLPKGKHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNSSDKIIEPIQSRCAML 188
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
R+ LS+ + ++++ IC +E ++ + L + +QGD+R+A+ LQ F + +
Sbjct: 189 RYGKLSDAQILAKIIDICKKEDVSHTDDGLEAIVFTAQGDMRQALNNLQSTHNGF-NHVN 247
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
S+++ V P +V+ + C G+ A + ++ GY A +++ +F V +
Sbjct: 248 SENVFKVCDEPHPLLVKEMLEFCTEGNISKAYGVMEHLWKMGYSAEDIINNIFK-VAKNL 306
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQL 360
I + + K + +VDG + LQ+
Sbjct: 307 LIDETLKLDFVKEIGITHLGIVDGVNSLLQM 337
>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 347
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 188/317 (59%), Gaps = 17/317 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + + E++ ++ + + PH+LFYGPPGTGKT+T AIA +L+G
Sbjct: 21 PWVEKYRPKDLSGLIAHEDITDTVSKLIAKNSLPHLLFYGPPGTGKTSTIQAIARKLYG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y VLELNASDDRGI+VVR +IKTFA+ + PYK+IILDEADSMT
Sbjct: 80 ESYSRMVLELNASDDRGIDVVREQIKTFASSMFM-------FSNYPYKLIILDEADSMTN 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y++ TRF ICNY+S+I+ L SRC +FRF PL ++ R+ I
Sbjct: 133 PAQTALRRVIEKYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPRSAITKRMKEIIEC 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISVSGVIPPEVVEG 287
E L ++ +AL+++ ++S+GD+R+ + LQ A+ G++I + +G P ++
Sbjct: 193 ESLKVNDDALNSIITLSEGDMRKCLNILQSASMSIDVGTTIDKDTIYRCTGQPLPTDIKK 252
Query: 288 LFAVCRSGDFDLANKEVNNII----AEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+ + + A +NNI+ +G + ++ ++ + ++ +I + K L
Sbjct: 253 ILMWSLNQSYIEA---LNNILELKKEKGLSLTDIIKEIHFMTLKVPNIGGPALWNLVKEL 309
Query: 344 AEVDKCLVDGADEYLQL 360
++++ L GA E LQL
Sbjct: 310 SDIEYNLSFGASEKLQL 326
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 189/328 (57%), Gaps = 19/328 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++PWVEKYRP + ++ ++++ VL +E PH L YGPPGTGKT+T LA A ++
Sbjct: 424 ARPWVEKYRPSSLDELVAHKDIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMY 483
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR---GGYPCPPYKIIILDEA 164
G YKS LELNASDDRGI+VVR +IK FA G RR G K+IILDEA
Sbjct: 484 GAG-YKSMTLELNASDDRGIDVVRDQIKEFA------GTRRLFSKGI-----KLIILDEA 531
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D MT+DAQ ALRR +E Y+ RF ICNY ++II L SRC KFRF PL+ + ++ RV
Sbjct: 532 DMMTKDAQFALRRVIEKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPDQIAGRVA 591
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
I E + + +A L + +GD+RR + LQ AA + +T + L V+G P+
Sbjct: 592 DIVRRENVAIGTKATDALLELGKGDMRRVLNVLQAAAVAYPGEVTYESLFLVTGNPLPDH 651
Query: 285 VEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
V+ +FA + FD A + ++ +GY LL+++ VV + + + +A + L
Sbjct: 652 VDAIFASLLNDTFDAARTLLGDLCKTQGYALPDLLTRINAKVVAAK-LPNAAKAHVLTKL 710
Query: 344 AEVD-KCLVDGADEYLQLLDVASNVIRA 370
A+++ +C E LQL + S + A
Sbjct: 711 ADIEYRCAFATTTE-LQLSSLVSAFVVA 737
>gi|307209915|gb|EFN86693.1| Replication factor C subunit 2 [Harpegnathos saltator]
Length = 351
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 191/345 (55%), Gaps = 10/345 (2%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
T+ P S ++VK K SS PW+EKYRP+ D+ E+ V L + N P++
Sbjct: 13 TEILPSTSSNDVKVKEKDSKSSSLPWIEKYRPQVFPDIVGNEDTVSRLAVFAQHGNTPNI 72
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
+ GPPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA
Sbjct: 73 IIAGPPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA------- 124
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
Q++ P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN IIEP+ SR
Sbjct: 125 QKKVNLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACNNTEEIIEPIQSR 184
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
CA R+ L++ + ++VL +C +E ++ + + + +QGD+R+A+ LQ F
Sbjct: 185 CAMLRYGKLTDAQILAKVLEVCEKENVSYTDDGMEAIVFTAQGDMRQALNNLQSTYNGF- 243
Query: 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV 325
+ + +++ V P +V+ + C GD A +++ GY A ++S +F V
Sbjct: 244 NHVNGENVFKVCDEPHPLIVKEMLDDCIKGDVSKACTVMDHFWKMGYSAEDIISNVFK-V 302
Query: 326 VETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
+ + ++ + K + +V+G + LQL + + + RA
Sbjct: 303 CKIHAMDEKLKLMFVKEIGITHMGIVEGINSLLQLHALVARLCRA 347
>gi|403163867|ref|XP_003323926.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164648|gb|EFP79507.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 342
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 173/311 (55%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + + L NCPH++ G PG GKTT+ L +AH L G
Sbjct: 22 PWVEKYRPIILDDITGNTDTIERLKVIARDGNCPHIIISGAPGIGKTTSILCLAHALLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIKTFA V P +KIIILDEADSMT
Sbjct: 81 DAYKEGVLELNASDERGIDVVRNKIKTFANTKVT-------LPAGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ L ++ + R++ I
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACNNSSKIIEPIQSRCAILRYGKLKDQEVLKRLVEIATA 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L S+GD+R+AI LQ FG ++++ + V P V++ L
Sbjct: 194 ENVKYAEDGLAALIFTSEGDMRQAINNLQSTVSGFG-FVSAESVFKVCDQPHPVVIQKLL 252
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ C GD A ++ ++ +GY A ++ L VV + +S+ + K +
Sbjct: 253 SACEKGDLSDALDQLEHLWEQGYSALDIVGTLLKVVKSMDRMSEFLKLEFIKEIGFTHMR 312
Query: 350 LVDGADEYLQL 360
+++G +QL
Sbjct: 313 ILEGVSTLVQL 323
>gi|159484076|ref|XP_001700086.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
gi|158272582|gb|EDO98380.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
Length = 340
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/276 (42%), Positives = 166/276 (60%), Gaps = 9/276 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + ++ E V L E N P+++ GPPGTGKTT+ L +AHQL GP
Sbjct: 24 PWLEKYRPQFINEIVGNTEAVARLQVIAEEGNMPNVILSGPPGTGKTTSILCLAHQLLGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 84 N-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTA 135
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ + +E + +R+ + +
Sbjct: 136 GAQQALRRTMEIYSGTTRFALACNMSSKIIEPIQSRCAIVRYTRIPDEDILARMRLVAEK 195
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + + + + GD+R+A+ +Q FG I+ +++ V P++V G+
Sbjct: 196 EGVTYNDAGMEAVIFTADGDMRQALNNMQATHSGFG-FISQENVFKVCDQPHPKLVMGII 254
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV 325
A C++GD D A + + GY +++ +F VV
Sbjct: 255 AKCKAGDLDAAYAGMKELQDMGYSPMDIITTVFRVV 290
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 191/320 (59%), Gaps = 11/320 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP+ + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 7 APLQTRNLPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILA 66
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++IL
Sbjct: 67 CARQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVIL 118
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS + M
Sbjct: 119 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIP 178
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP 281
R+ H+ +E +++ + + + ++S GD+RR++ LQ + +G +T + + +G
Sbjct: 179 RLEHVIQQENIDITPDGMKGIVTLSTGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHPL 237
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
+ + C + DF A ++ + +G +L+++ ++V D + +
Sbjct: 238 RSDIANILDWCLNKDFTSAYNQILELKTLKGLALHDILTEVH-LLVHRVDFPPAIRISLL 296
Query: 341 KCLAEVDKCLVDGADEYLQL 360
LA+V+ L G E +QL
Sbjct: 297 IKLADVEHRLASGTSEKIQL 316
>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343484218|dbj|BAJ49872.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 327
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 182/313 (58%), Gaps = 12/313 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ DV +QE+VV L N + + N PHMLF GPPGTGKT TA A A LFGP
Sbjct: 10 PWVEKYRPRRLDDVVNQEQVVEALKNIVVSKNVPHMLFAGPPGTGKTATAHAFAQDLFGP 69
Query: 110 E-LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ +E+NASD+RGI +R ++KT+A R + +++++LDE+D +T
Sbjct: 70 RYIEDGHFIEINASDERGIETIRERVKTYA--------RSVPFGGIGFRLLLLDESDQLT 121
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+ AQ+A RRTME +S RF NY +RIIEP+ SRCA RFKPLS++++ + + I
Sbjct: 122 DAAQHAFRRTMEQFSTTCRFILAANYSNRIIEPIQSRCAVLRFKPLSKDMVETMLKKIAA 181
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E + LD A+ + S GD+R+AI LQ AA + +I SK + V GV+ + +
Sbjct: 182 SENIKLDDSAIDAIYEFSLGDMRKAINILQSAASI-SKTIDSKTIYDVMGVVSRGEITRM 240
Query: 289 FAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ G F A + ++ +GY + ++S + + +S++ + R+ + E D
Sbjct: 241 LQLVLDGKFIEARNLLRELLYVQGYQPTDIVSSIAR-EIPLLPVSEQDKLRLMDLIGETD 299
Query: 348 KCLVDGADEYLQL 360
+ +G +QL
Sbjct: 300 YRISEGGTPEVQL 312
>gi|171692201|ref|XP_001911025.1| hypothetical protein [Podospora anserina S mat+]
gi|170946049|emb|CAP72850.1| unnamed protein product [Podospora anserina S mat+]
Length = 357
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 182/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 36 PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSVLCLARQLLG- 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 95 DAYKEAVLELNASDERGIDVVRQRIKGFA-------QKKVTLPQGRHKLVILDEADSMTS 147
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R+L I +
Sbjct: 148 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLLQIIDA 207
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 208 EGVKFSEDGLAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFKVVDSPHPIKVQAML 266
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V E +S+ + K +
Sbjct: 267 KACYEGNVDSALDTLRELWDLGYSSHDIISTMFRVTKTIETLSEHSKLEFIKEIGFTHMK 326
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G LQL S + +C + P+ F+
Sbjct: 327 VLEGVQTLLQL----SGCVVRLCRLNMDPKRFE 355
>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
gi|150415672|sp|A3CUX9.1|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
Length = 322
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 184/311 (59%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+++ ++ Q+++V L + ++T N PH+LF G G GKTT A+A+A + FG
Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+++ E+NASD+RGI+VVR +IK FA + +G +KI+ LDEAD++T D
Sbjct: 68 -WQTNFREMNASDERGIDVVRNQIKEFARTSPLAG--------ATFKILFLDEADALTTD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTMETY++ RF CNY S+II+P+ SRCA +RF+PL E + I E
Sbjct: 119 AQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
GL + AL + ++ GD+R+AI LQGAA + + I + + ++ PE ++ L
Sbjct: 179 GLTVTEGALDAIVYVASGDMRKAINALQGAA-ILRTDIDEETIFEITATARPEEIDELLD 237
Query: 291 VCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ G FD A + + + G + L++Q + +V+ DI + ++ L E D
Sbjct: 238 LSIGGRFDEAEQALLELTHVRGIAPNELINQCYRALVQ-RDIDRTLKVKLIDALGETDFR 296
Query: 350 LVDGADEYLQL 360
L +GA +Q+
Sbjct: 297 LSEGASSDIQM 307
>gi|345484012|ref|XP_001599543.2| PREDICTED: replication factor C subunit 5-like [Nasonia
vitripennis]
Length = 285
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 142/216 (65%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE+++ + ++ PH+L YGPPGTGKT+T LA A +L+ P
Sbjct: 13 PWVEKYRPSKLDDLISHEEIIQTINKFIDENQLPHLLLYGPPGTGKTSTILACAKKLYTP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR +I +FA+ G+ R G YK+IILDEAD+MT
Sbjct: 73 QQFNSMVLELNASDDRGIGIVRGQILSFAST--GTMYRSG------YKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PL+ E + R+ H+ E
Sbjct: 125 DAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLAPEQILPRLEHVITE 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + + L ++S GD+R+ I LQ FG
Sbjct: 185 ENVTVTEDGKKALMTLSGGDMRKVINVLQSTWLAFG 220
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 192/326 (58%), Gaps = 13/326 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ + + PWVEKYRP+ + +V Q+++V + +ET PH+LFYGPPGTGKT+T +
Sbjct: 1 MSDKYRDNLPWVEKYRPENLTEVYGQQDIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIV 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+A +++GP YK+ VLELNASDDRGI+VVR +IK+FA+ + Q P +K+II
Sbjct: 61 ALAREIYGPN-YKNMVLELNASDDRGIDVVRNQIKSFAS----TRQIFTSSSSPQFKLII 115
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT AQN+LRR +E Y+K RF + NY ++ L SRC +FRF P+ E +
Sbjct: 116 LDEADAMTSVAQNSLRRIIEKYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEAAIR 175
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS--- 277
SR+ ++ +E +N+ +AL+ L +SQGD+RR++ LQ G + + I V
Sbjct: 176 SRIDNVIIKEKVNITPDALNALLQLSQGDMRRSLNVLQACKAACGDDDDNSETIDVEMIY 235
Query: 278 ---GVIPPEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISD 333
G P+ +E + D+ A +N I +G L++ D++ + + +
Sbjct: 236 NCVGAPHPQDIETVLDSILKQDWTTAYMTLNKYKIDKGLALIDLITGFIDILNDYK-VKP 294
Query: 334 EQQARICKCLAEVDKCLVDGADEYLQ 359
+ + K L+EV+ + G ++ +Q
Sbjct: 295 KTRIEYLKGLSEVEYGISKGGNDRIQ 320
>gi|237843503|ref|XP_002371049.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|211968713|gb|EEB03909.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|221484795|gb|EEE23089.1| activator 1 36 kDa, putative [Toxoplasma gondii GT1]
gi|221504971|gb|EEE30636.1| activator 1 36 kDa, putative [Toxoplasma gondii VEG]
Length = 398
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 198/364 (54%), Gaps = 32/364 (8%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK+ ++ A + PWVEKYRP+++ DV ++++R + N + PH+LF+
Sbjct: 18 APEKASSQLPSAHA---DRALPWVEKYRPERLSDVLAHDDIIRTIRNYVHKGQLPHLLFH 74
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS---- 144
GPPGTGKT+T LA+A + +G + ++ VLELNASDDRGIN VR +IKTFA + S
Sbjct: 75 GPPGTGKTSTILAVAKEFYGSAV-RTHVLELNASDDRGINTVREQIKTFAETSSTSFQQN 133
Query: 145 ---------------------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183
GQ + G P K+IILDEAD MT AQNALRR ME Y+
Sbjct: 134 RLIFGKSAVPATEAAEATSSHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIMEAYA 193
Query: 184 KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLS 243
+ RF ICN++++I + SRC FRF P+S + ++ I +E + L + L L
Sbjct: 194 RNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 253
Query: 244 SISQGDLRRAITYLQGAARLFGSSITSKDLISVS-GVIPPEVVEGLFAVCRSGDFDLANK 302
I++GD+RR + +Q + + D++ + G+ PP V +F DF K
Sbjct: 254 KIARGDMRRLLNCMQASHLAHPGEEVNADIVHRTLGLPPPSEVTTMFERLLVADFFACCK 313
Query: 303 EVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLL 361
E++ ++ A+GY + + ++ + ++ + + LA++++ L GA E +Q+
Sbjct: 314 ELDELVTAKGYAMRDWVIAFHERILLVDWPANVLITFVSR-LADLEERLATGASEAVQMH 372
Query: 362 DVAS 365
V +
Sbjct: 373 AVVA 376
>gi|332016496|gb|EGI57389.1| Replication factor C subunit 2 [Acromyrmex echinatior]
Length = 355
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 189/341 (55%), Gaps = 10/341 (2%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S VK K ++ PW+EKYRP+ D+ E+ V L+ + N P+++ G
Sbjct: 21 PSTSNSNVKIKEKDGKSANLPWIEKYRPQVFSDIVGNEDTVSRLSVFAQHGNTPNIIIAG 80
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 81 PPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA-------QKKV 132
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN IIEP+ SRCA
Sbjct: 133 NLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACNNTEEIIEPIQSRCAML 192
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
R+ L++ + ++VL +C +E ++ + + + +QGD+R+A+ LQ F + +
Sbjct: 193 RYGKLTDAEVLAKVLEVCEKENVSYTDDGMEAIIFTAQGDMRQALNNLQSTYNGF-NHVN 251
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
++++ V P +V+ + C GD A +++ GY A ++S +F V +
Sbjct: 252 AENVFKVCDEPHPLIVKDMLDDCIKGDVSKACSVMDHFWKMGYSAEDIISNVFK-VCKNH 310
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
I + + + K + +V+G + LQL + + + RA
Sbjct: 311 TIDERLKLKFVKEIGITHMGIVEGINSLLQLHALVARLCRA 351
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 186/323 (57%), Gaps = 10/323 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A ++FGP
Sbjct: 25 PWVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLLFYGPPGTGKTSTILAMARKIFGP 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +++ VLELNASDDRGI VVR +IK FA+ + G +K+I+LDEAD+MT+
Sbjct: 85 Q-FRNSVLELNASDDRGIEVVREQIKGFASTKSVFSSKGG------FKLIVLDEADAMTQ 137
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + + R+ H+
Sbjct: 138 AAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLQLDQVEDRLNHVIEN 197
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG + + L +S+GD+RRA+ LQ A I + + +G P +E +
Sbjct: 198 EGCKITQDGKEALLKLSRGDMRRALNVLQ-ACHAASDHIDETAVYNCTGNPHPSDIEAML 256
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+F A ++ + A+G + ++S ++D++ T + + + + LA +
Sbjct: 257 KSMMQEEFTTAYTTISGLKTAKGIALADMISGVYDLLA-TIKLPAKSKIYLLDHLAHTEH 315
Query: 349 CLVDGADEYLQLLDVASNVIRAV 371
L G E +QL + V AV
Sbjct: 316 RLSTGGSEKIQLTALLGAVKVAV 338
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 185/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 19 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + +RG +K++ILDEAD+MT+
Sbjct: 79 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKRG------FKLVILDEADAMTQ 130
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 131 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 190
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 191 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANIL 249
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A K + + +G +L+++ + V D + + +A+++
Sbjct: 250 DWMLNQDFTTAYKNIMELKTLKGLALHDILTEV-HLFVHRVDFPSSVRMHLLTKMADIEY 308
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 309 RLSVGTSEKIQL 320
>gi|269986185|gb|EEZ92497.1| Replication factor C [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 315
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 182/311 (58%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ ++ Q+E+V L E HM+ GPPG GKTT+A+ +A +FGP+
Sbjct: 4 WIEKYRPQSFDEIIGQKEIVEKLKAMAEKKEIQHMILSGPPGVGKTTSAVVLAKAVFGPD 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ +ELNASDDR ++V++ K+K FA R P+KII+ DEADS+T++
Sbjct: 64 -WTQNFIELNASDDRKLSVIQGKVKEFA---------RTKPIDAPFKIILFDEADSLTQE 113
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y RF F NY S IIEPL SRCA RF+PLS+E + + I E
Sbjct: 114 AQQALRRMMEEYINTCRFVFSVNYQSNIIEPLQSRCAILRFQPLSKEDVHKFIKRIAESE 173
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP-PEVVEGLF 289
L++D EA+ L +S+GDLR + +Q + + I +K ++ SG++ + ++GL
Sbjct: 174 KLDIDKEAMDALDYVSRGDLRTLVNLMQSLSNV-SKKIDAKAVLQSSGLMDISKTIDGL- 231
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
SGDF + + + II G LL +F+V+ T+ ++++ + + + LAE D
Sbjct: 232 KTALSGDFKKSREIFSEIIDNGVNMKELLISIFNVISTTDIVNEKVKNYVFEKLAETDYR 291
Query: 350 LVDGADEYLQL 360
+V+GA ++Q
Sbjct: 292 IVEGATPFIQF 302
>gi|392597749|gb|EIW87071.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 334
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 188/333 (56%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + NCPH++ G PG GKTT+ +AHQL G
Sbjct: 14 PWVEKYRPTLLDDVVGNVETIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK+FA Q++ P +KI+ILDEADSMT
Sbjct: 73 DAYKEGVLELNASDERGIDVVRNKIKSFA-------QKKVTLPPGRHKIVILDEADSMTG 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L + + +R+L IC E
Sbjct: 126 GAQQALRRTMEIYSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEVLARLLEICKE 185
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L +GD+R+AI LQ FG ++ +++ V P +V+ +
Sbjct: 186 ENVQYNDDGLTALIFTCEGDMRQAINNLQSTHSGFG-FVSGENVFKVCDQPHPVIVQAII 244
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C + D A ++++ + +GY A ++ LF V +++ + + K +
Sbjct: 245 RACHKCEVDSALEKLHELWDQGYSAVDIVVTLFRVAKTFDELPEYTKLEYIKEIGFTHMR 304
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL + ++ +C + PE F+
Sbjct: 305 VLEGVGTLMQL----AGLVARLCKLHMKPELFK 333
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 185/322 (57%), Gaps = 16/322 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
SS PWVEKYRP ++ D+ + +V + +E PH+LFYGPPGTGKT+ +AIA ++
Sbjct: 30 SSWPWVEKYRPSRMDDIIAHKGIVSTINQLVEKQKLPHLLFYGPPGTGKTSMIIAIARKI 89
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEA 164
+G + S VLELNASDDRGI+VVR +IK FA SG K+IILDEA
Sbjct: 90 YGKH-FSSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSSGA----------KLIILDEA 138
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ +LRR +E Y+K TRF ICNY+S+II L SRC +FRF PL + RV
Sbjct: 139 DSMTNDAQFSLRRVIEKYTKHTRFCLICNYVSKIIPALQSRCMRFRFAPLGVTQVGDRVK 198
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
I + E ++L L + +GD+RR + LQ AA L +++ +++ +G PE
Sbjct: 199 QIRDLEKIDLTDGGFDALMQLGKGDMRRILNILQ-AASLAYATVNEENVYLCTGNPVPED 257
Query: 285 VEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+ + + F A + I + +GY + ++ +++ E D+ + Q I L
Sbjct: 258 IAAICHSLWNDSFAEAVSKCQAIQMTKGYATTDIMKEVYHNTTEV-DLPAKCQHFIYDEL 316
Query: 344 AEVDKCLVDGADEYLQLLDVAS 365
A+++ L GA E LQL+ + S
Sbjct: 317 AKLEHRLATGASEKLQLISLVS 338
>gi|342186045|emb|CCC95530.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 341
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 176/333 (52%), Gaps = 13/333 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + V L N P++L GPPGTGKTT+ L +A L
Sbjct: 7 PWVEKYRPISMDDIVGNADAVARLQVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLSD 66
Query: 110 EL--------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR---RGGYPCPPYKI 158
K VLELNASDDRG++VVR KIK FA Q+ G +KI
Sbjct: 67 SEGGGSSSNALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVDDSGNRKINLHKI 126
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRT+E +S TRF F CN +IIEP+ SRCA RFK LS
Sbjct: 127 VILDEADSMTPAAQQALRRTIELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLSHAD 186
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+ R++HI EE + + L L +++GDLR A+ LQ + S + + ++ V
Sbjct: 187 ILKRLMHIIREENVTYTEDGLEALLYLAEGDLRSAVNALQATCSGY-SVVNADNVFKVCD 245
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDE-QQA 337
+ P +VEG+ C D A+KE+ ++ GY S ++S F + DE QQ
Sbjct: 246 LPHPHLVEGILTSCLKQDLAEAHKEMQRLLGRGYATSDVISTFFRAAQNVKLFRDEKQQL 305
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
+ + + EV + +G LQL + +I A
Sbjct: 306 EVLRIIGEVTMRIAEGVGTPLQLASMLCRIIVA 338
>gi|296419853|ref|XP_002839506.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635667|emb|CAZ83697.1| unnamed protein product [Tuber melanosporum]
Length = 358
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 183/330 (55%), Gaps = 12/330 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++D+ E V L + N PH++ G PG GKTT+ L +A L G
Sbjct: 31 PWVEKYRPIFLEDIVGNSETVERLKIIGKDGNMPHLIISGMPGIGKTTSVLCLARALLG- 89
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P K++ILDEADSMT
Sbjct: 90 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRQKVVILDEADSMTA 142
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+L IC
Sbjct: 143 GAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVLHRLLEICLA 202
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L+ L ++GD+R+AI LQ FG +++ ++ V P V+ L
Sbjct: 203 EKVEHSEEGLAALIFSAEGDMRQAINNLQSTVAGFG-FVSADNVFKVVDSPHPIAVQALI 261
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C +G D A +++ + +GY A ++S +F V + +S+ + K +
Sbjct: 262 KACYTGKIDAALEKLEELWGKGYSAIDIISTMFRVTKTVDALSEHSKLEFIKVIGFTHMR 321
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEF 378
+++G LQL + + + NM PE F
Sbjct: 322 ILEGVATLLQLRGCIAKLTK--INMSPELF 349
>gi|443920619|gb|ELU40509.1| replication factor C subunit 4 [Rhizoctonia solani AG-1 IA]
Length = 411
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 182/325 (56%), Gaps = 11/325 (3%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K K A + PWVEKYRP+ + D+ E + L + NCPH++ G PG GKTT
Sbjct: 7 KAKQATEIGYELPWVEKYRPQTLNDIVGNVETIDRLKVIAQDGNCPHIIISGMPGIGKTT 66
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
+ +AH + G + YK VLELNASD+RGI+VVR KIK FA Q++ P +K
Sbjct: 67 SIHCLAHAMLG-DAYKEGVLELNASDERGIDVVRGKIKAFA-------QKKVTLPPGRHK 118
Query: 158 IIILDEADS--MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
I+ILDEAD MT AQ A+RRTME +S TRF CN ++IIEP+ SRCA R+ L
Sbjct: 119 IVILDEADRWVMTTGAQQAMRRTMEIFSSTTRFALACNQANKIIEPIQSRCAVLRYAKLR 178
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+E + RVL +C E + + E L+ L ++GDLR+A+ LQ FG +++ ++
Sbjct: 179 DEEVLKRVLEVCEMEKVKYNDEGLTALLFTAEGDLRQALNNLQSTHAGFG-FVSADNVFR 237
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQ 335
V P +V+ + C++GD D A ++N + GY A +++ LF V +D+ +
Sbjct: 238 VCDQPHPVIVQEIIRACQNGDIDSAMSKLNELWHNGYSAVDIVTTLFRVTKTFDDLPEYM 297
Query: 336 QARICKCLAEVDKCLVDGADEYLQL 360
+ K + +++G +QL
Sbjct: 298 KLEFIKEIGWTHMRVLEGVGTLVQL 322
>gi|395645923|ref|ZP_10433783.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
gi|395442663|gb|EJG07420.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
Length = 322
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 187/315 (59%), Gaps = 12/315 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S W+EKYRP+ ++D+ QEE+V L + + + + PH+LF GP G GKTT A+A+A +
Sbjct: 4 NSTIWIEKYRPQTLEDMVGQEEIVERLRSYVRSGSLPHLLFTGPAGVGKTTAAVALAREF 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FG E ++ ELNASD+RGI+VVR +IK FA + G +K++ LDEAD+
Sbjct: 64 FG-ETWQMNFRELNASDERGIDVVRNQIKQFARTSPLGG--------ATFKVLFLDEADA 114
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
+T DAQ ALRRTME Y++ RF CNY S+II+P+ SRCA +RFK L E ++ +V +
Sbjct: 115 LTPDAQAALRRTMENYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKGLDEAAVAEQVRRV 174
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
E ++L +A+ ++ I++GD+R+A+ LQGAA + I ++ + + PE +
Sbjct: 175 AAAEEISLTDDAVHAIAYIAEGDMRKALNALQGAA-ILSDRIDARMIYETTSTAKPEEIA 233
Query: 287 GLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
L +C GDF A + +++ G L++Q F + + + + A I + E
Sbjct: 234 DLLGLCTKGDFTGAQGALRHLLRNRGIAPGELINQCFRALTSYQMDTALKVAYI-DHIGE 292
Query: 346 VDKCLVDGADEYLQL 360
D + +GAD +Q+
Sbjct: 293 ADFRISEGADAEIQM 307
>gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 184/313 (58%), Gaps = 14/313 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +++D+ E++V +LT +++ N PH+L YGPPGTGKT+T +A A +++G
Sbjct: 2 PWVEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYGS 61
Query: 110 -ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
Y S LELNASD RGI+VVR +IK FA G R+ + K+IILDEAD+MT
Sbjct: 62 TAAYSSMALELNASDSRGIDVVRNEIKEFA------GTRQLFHS--GIKLIILDEADAMT 113
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ ALRR +E ++K RF ICNY+S+II L SRC +FRF PL +E + SR++ + +
Sbjct: 114 SDAQFALRRVIEKHTKNARFCLICNYVSKIIPALQSRCTRFRFAPLKQEQIRSRLVEVAD 173
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS-KDLISVSGVIPPEVVEG 287
E N + + + +S GD+RR + LQ A GS I K++ SG P V
Sbjct: 174 AEKCNYTEDGIQAILDLSGGDMRRVLNLLQSTA--MGSEIVDEKNVYMTSGAPLPRDVHV 231
Query: 288 LFAVCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ +F D+ K N +GY + +L++L + V E + A + +++V
Sbjct: 232 AMEWLMNLEFKDVYEKLTNMCSTKGYALTDILTELANKVTEA-NFPPGVLAVLLDGMSDV 290
Query: 347 DKCLVDGADEYLQ 359
+ L G DE LQ
Sbjct: 291 EHRLAFGTDEKLQ 303
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 192/319 (60%), Gaps = 11/319 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + + PWVEKYRP+++ D+ +++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 8 PLQKRNLPWVEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGKTSTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 ARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS + M R
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPR 179
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ H+ +E +++ + + + ++S GD+RR++ LQ + + +T + + +G
Sbjct: 180 LEHVIQQESIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAY-EKVTEETAYNCTGHPLR 238
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
+ + + DF A K++ + +G +L+++ +++ D + + +
Sbjct: 239 SDIANILDWALNKDFTTAYKQILELKTLKGLALQDILTEVH-LLIHRVDFPPDIRIGLLI 297
Query: 342 CLAEVDKCLVDGADEYLQL 360
LA+V+ L G DE +QL
Sbjct: 298 KLADVEHRLASGTDEKIQL 316
>gi|149235013|ref|XP_001523385.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146452794|gb|EDK47050.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 321
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 178/325 (54%), Gaps = 12/325 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ EE V L + N PHM+ G PG GKTT+ +A++L G
Sbjct: 9 PWVEKYRPRVLDDIVGNEETVERLKIIAKDGNIPHMIISGLPGIGKTTSVHCLAYELLGK 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 69 EYYHQATMELNASDDRGIDVVRNKIKQFA-------QTKILIPPGRTKIIILDEADSMTP 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN +IIEPL SRCA R+ LS+E + +R+L I
Sbjct: 122 GAQQALRRTMEIYSNTTRFVFACNQSLKIIEPLQSRCAILRYNKLSDEEVLARLLEIIKA 181
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L L ++GD+R+AI LQ FG + ++ + P V++ +
Sbjct: 182 EDVKFNNEGLQALIFSAEGDMRQAINNLQSTVAGFG-FVNDVNVFKIVDQPHPLVIQKIL 240
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
D D A + ++ + +GY A +++ F V ++ + ++ + K +
Sbjct: 241 THSLKKDIDQALQLLDGLWLKGYSAIDIVTLSFKVAKTIPNVDELKRLEMIKEIGFTHMR 300
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM 374
+++G YLQL S + +CN+
Sbjct: 301 VLEGLGTYLQL----SGMYAKICNL 321
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALQDILTEI-HLFVHRVDFPSSVRVHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|402219931|gb|EJU00004.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 343
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 182/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+ +AH L G
Sbjct: 23 PWVEKYRPRVLDDVVGNTDTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHALLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGIDVVRNKIKTFA-------QKKVTLPPGRHKIIILDEADSMTA 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC
Sbjct: 135 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSKLRDQEVLKRLLEICEA 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L+ L ++GD+R+AI +Q FG + ++ V P +++ +
Sbjct: 195 EKVKYNDEGLTALIFTAEGDMRQAINNIQSTWSGFG-FVNGDNVFKVCDQPHPVLIQAML 253
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD +++ + +GY A ++ LF V ++ + + + +
Sbjct: 254 RSCHKGDVQGTMDKLDELWGQGYSAVDIVVTLFRVTKTFNELQEYSKLEYIREIGWTHMR 313
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL + ++ +C M PE F+
Sbjct: 314 VLEGVGTKMQL----AGLVARLCKMNMKPELFK 342
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++L + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 192 EKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 250
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 251 DWMLNQDFTTAYRNIMELKTLKGLALHDILTEI-HLFVHRVDFPSSVRVHLLTKMADIEY 309
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 310 RLSVGTNEKIQL 321
>gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R]
gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R]
Length = 332
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/276 (42%), Positives = 163/276 (59%), Gaps = 9/276 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E + L + NCPH++ G PG GKTT+ +AHQL G
Sbjct: 24 PWVEKYRPQVLDDIVGNAETIDRLKVIAKDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 83 DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPGRHKIVILDEADSMTP 135
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+ L + + R+L IC
Sbjct: 136 GAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEM 195
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L S+GD+R+AI LQ FG I+ ++ V P +V+ +
Sbjct: 196 EKVQYNDDGLTALIFTSEGDMRQAINNLQSTHSGFG-FISGDNVFKVCDQPHPIIVQSII 254
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV 325
C D D A +++N + +GY A ++ +F VV
Sbjct: 255 RACIKSDIDGAMEKLNELWDQGYSAVDIVVTVFRVV 290
>gi|397780149|ref|YP_006544622.1| Replication factor C small subunit [Methanoculleus bourgensis MS2]
gi|396938651|emb|CCJ35906.1| Replication factor C small subunit Short=RFC small subunit
[Methanoculleus bourgensis MS2]
Length = 324
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 185/311 (59%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+++ ++ Q+++V L + + T N PH+LF G G GKTT A+A+A +LFG +
Sbjct: 10 WIEKYRPRRLDEMVGQQDIVVRLQSYVRTGNLPHLLFTGSAGIGKTTAAVALARELFG-D 68
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ E+NASD+RGI+VVR +IK FA + +G +K++ LDEAD++T D
Sbjct: 69 SWQMNFREMNASDERGIDVVRNQIKEFARTSPLAG--------ATFKVLFLDEADALTTD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTMETY++ RF CNY S+II+P+ SRCA +RF+PL E + + I E
Sbjct: 121 AQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEEITRIAAIE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
GL + AL + ++ GD+R+AI LQGAA + I + + ++ P+ ++ L
Sbjct: 181 GLTVTEGALDAIVYVASGDMRKAINALQGAA-ILRPEIDEEMIYEITATARPDEIDELLD 239
Query: 291 VCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ G FD A + ++ +I G + L++Q + +V D+ + R+ L E D
Sbjct: 240 LSMEGRFDEAEQALSELIRGRGIAPNELINQCYRSLVR-RDLPRPLKVRLIDALGETDFR 298
Query: 350 LVDGADEYLQL 360
L +GA +Q+
Sbjct: 299 LSEGASSDIQM 309
>gi|425773728|gb|EKV12062.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum PHI26]
gi|425782289|gb|EKV20208.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum Pd1]
Length = 352
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 173/311 (55%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E V L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPTFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPQGRHKLVILDEADSMTA 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 141 GAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLMQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 ENVEHSEDGIAALVFSAEGDMRQAINNLQSTWSGFG-FVSGDNVFRVVDSPHPVKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D+A + +N + GY + ++S +F V +S+ + + +
Sbjct: 260 KACWEGKVDVALEGLNELWTLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMR 319
Query: 350 LVDGADEYLQL 360
++DG LQL
Sbjct: 320 ILDGVQSLLQL 330
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 186/320 (58%), Gaps = 12/320 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP + PWVEKYRPK + DVA +E++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 7 APSIIDDAPWVEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGKTSTILA 66
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+A Q++G L +S VLELNASDDRGI +VR +I FA+ + +K++IL
Sbjct: 67 VARQMYGASL-RSMVLELNASDDRGIGIVREQIVDFASTKTMFSNK--------FKLVIL 117
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DE D+MT+DAQ ALRR +E Y++ TRF ICNY+++II L SRC +FRF PL++ + S
Sbjct: 118 DECDAMTKDAQAALRRVIEKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRS 177
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP 281
R+ + + E +N+ L + ++ GD+RR + LQ A + ++ + + +G
Sbjct: 178 RLQFVIDSERVNMGDGGLDAVVTLGAGDMRRTLNILQ-ATHMSADVVSEEAVYQCTGNPL 236
Query: 282 PEVVEGLFAVCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P+ +E + + DF D+ K + I +G + ++ QL V ++ + ++
Sbjct: 237 PKDIEAIVQALFNEDFVDVFAKVQDMQINKGLALTDIVQQLHPWVFRV-NMPASVRIKLV 295
Query: 341 KCLAEVDKCLVDGADEYLQL 360
LA+ + L G E LQL
Sbjct: 296 DALADTEHRLAFGTSERLQL 315
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 191/315 (60%), Gaps = 16/315 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP + ++ Q+E++ L N +E + PH+LF G PG GKTT AL +A L+G
Sbjct: 3 KPWVEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 DD-WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + +I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDVLDYMNYIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI-SVSGVIPPEVVE 286
E + ++ + +S+GD+R+++ LQ AA + S++ +D++ VS P+ ++
Sbjct: 173 ENENITIEKSGSDAIIYVSEGDMRKSVNVLQTAAAV--SNVIDEDIVYKVSSRARPDEIK 230
Query: 287 GLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ + + F A +++ ++ + G +L+Q+F V DI + ++ + + +AE
Sbjct: 231 KMIDLAINARFMEAREQLYKLMIDWGMGGQDILTQVFREVPYL-DIEENEKVSLIEAIAE 289
Query: 346 VDKCLVDGADEYLQL 360
D +V+G ++ +QL
Sbjct: 290 CDFRIVEGGNDRIQL 304
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 192/324 (59%), Gaps = 13/324 (4%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M + + PWVEKYRP+ + +V Q+++V + +ET PH+LFYGPPGTGKT+T +
Sbjct: 1 MTDKYRDNLPWVEKYRPENLTEVYGQQDIVNTIRRFVETGKLPHLLFYGPPGTGKTSTII 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+A +++GP YK+ VLELNASDDRGI+VVR +IK+FA+ + Q P +K+II
Sbjct: 61 ALAREIYGPH-YKNMVLELNASDDRGIDVVRNQIKSFAS----TRQIFTSSSSPQFKLII 115
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT AQN+LRR +E Y+K RF + NY ++ L SRC +FRF P+ EE +
Sbjct: 116 LDEADAMTSVAQNSLRRIIERYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIR 175
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLISVSG 278
SR+ ++ +E +N+ +AL+ L +SQGD+RR++ LQ G +I + + + G
Sbjct: 176 SRIDNVIIKEKVNITPDALNALLRLSQGDMRRSLNVLQACKAACGDDETIDIEMIYNCVG 235
Query: 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQA 337
P+ +E + D+ A +N I +G L++ +++ D + +
Sbjct: 236 APHPQDIEAVLDSILKQDWTTAYLTLNKYKIDKGLALVDLITGFIEIL---NDYKVKPKT 292
Query: 338 RI--CKCLAEVDKCLVDGADEYLQ 359
RI K L EV+ + G ++ +Q
Sbjct: 293 RIEYLKGLCEVEYGISKGGNDKIQ 316
>gi|255070803|ref|XP_002507483.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
gi|226522758|gb|ACO68741.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
Length = 334
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 180/316 (56%), Gaps = 11/316 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PWVEKYRP ++ D+ ++ V LT T N P+++F GPPG GKTT+ L +AH L
Sbjct: 8 ASLPWVEKYRPTKIDDIVGNKDAVDRLTAIASTGNMPNLIFTGPPGIGKTTSVLCLAHTL 67
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
GP YK VLELNASDDRGI+ VR KIK FA Q++ P +KII+LDEADS
Sbjct: 68 LGPS-YKDAVLELNASDDRGIDAVRNKIKMFA-------QKKVTLPPGRHKIILLDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQ ALRRTME YS TRF CN +IIEP+ SRCA RF LS++ + R++ +
Sbjct: 120 MTSAAQQALRRTMELYSSTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVLERIVKV 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
E + + L + + GD+R+A+ +Q FG + +++ V P++V
Sbjct: 180 VEREEVPYVPDGLEAVVFTADGDMRQALNNVQATHSGFG-FVNQENVFKVCDQPHPQIVV 238
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV--VETEDISDEQQARICKCLA 344
A C GD D A+ ++ ++ G+ A+ ++ ++ VV + E + + + + + +
Sbjct: 239 DCVACCLRGDVDHAHDKMKSLHDAGFSAADVIGTVYRVVKNFDAESMPEFVKLEMIREVG 298
Query: 345 EVDKCLVDGADEYLQL 360
+ DG + LQL
Sbjct: 299 FTHMRIGDGVNSLLQL 314
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 189/327 (57%), Gaps = 10/327 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP + D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 20 QDLLPWVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARK 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G + +++ VLELNASD+RGI+VVR +IK+FA+ G + G +K+I+LDEAD
Sbjct: 80 IYGAQ-FRNSVLELNASDERGIDVVREQIKSFASTKSVFGAKAG------FKLIVLDEAD 132
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT+ AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + + SR+ H
Sbjct: 133 AMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPDQVESRLQH 192
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ E N+ L +S+GD+RRA+ LQ A I + + +G PE +
Sbjct: 193 VIESEHCNITPGGKEALLKLSRGDMRRALNVLQ-ACHAASDHIDETAVYNCTGNPHPEDI 251
Query: 286 EGLFAVCRSGDFDLA-NKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
E + +F A N V A+G + ++S ++D++ + + + + + LA
Sbjct: 252 EAVLKSMMQDEFTTAFNTIVALKTAKGIALADMISGVYDLLASIK-LPPKSRIYLLDHLA 310
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRAV 371
+ + L G E LQL + V AV
Sbjct: 311 DTEHRLSTGGSEKLQLTALLGAVKIAV 337
>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74855117|sp|Q54ST4.1|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 187/315 (59%), Gaps = 10/315 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK + D+ E++ + +T ++ PH+LFYGPPGTGKT+T AIA +L+
Sbjct: 23 SLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLY 82
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G Y VLELNASDDRGI+VVR +IKTFA+ PYK+IILDEADSM
Sbjct: 83 GDN-YSRMVLELNASDDRGIDVVREQIKTFASSMFFFNT------TVPYKLIILDEADSM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRR +E Y+K TRF +CNY+ +II L SRC +FRF PL R+ I
Sbjct: 136 TNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEII 195
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA-RLFGSSITSKDLISVSGVIPPEVVE 286
+E + +D++A++ + + GD+R+ + LQ + ++IT + + +G P +E
Sbjct: 196 EKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIE 255
Query: 287 GLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ + D++ A + ++++ +G + +++ L VV+ D+ + ++ L++
Sbjct: 256 LMVDWLLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQI-DLDNVILCKLLSHLSD 314
Query: 346 VDKCLVDGADEYLQL 360
++ L G+ E LQL
Sbjct: 315 IEYNLSIGSSEKLQL 329
>gi|154339736|ref|XP_001565825.1| putative replication factor C, subunit 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063143|emb|CAM45343.1| putative replication factor C, subunit 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 360
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 190/354 (53%), Gaps = 29/354 (8%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP+ V D+ E + L + N P++L GPPGTGKTT+ L +A L
Sbjct: 5 STPWVEKYRPQTVTDIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLL 64
Query: 108 ----------------GPELYKSRVLELNASDDRGINVVRTKIKTFAAV---------AV 142
++ K VLELNASDDRG++VVR KIK FA +
Sbjct: 65 LQSTDASSAGTSLGGSTKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKFFST 124
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
G G R + +KI++LDEADSMT AQ ALRRTME +S TRF F CN S+IIEP+
Sbjct: 125 GEGPTRDEHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSKIIEPI 184
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
SRCA RFK LS+ + R++++ +E ++ + L L +++GDLR+A+ LQ
Sbjct: 185 QSRCAVVRFKKLSDADILKRLVYVIQQESVSYTDDGLEALLYLAEGDLRQALNSLQATHT 244
Query: 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSG-DFDLANKEVNNIIAEGYPASLLLSQL 321
+G + + ++ V P +VE + C + D A+KE+N ++ GY +++
Sbjct: 245 GYG-LVNADNVFKVCDQPHPVLVENIITACITKRSIDEAHKEMNRLLNRGYAPVDVIATF 303
Query: 322 FDVVVETEDI--SDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373
F VV + S+ QQ + K + E + +G LQL + + +I AV N
Sbjct: 304 FKVVQTNARLFRSELQQLEVLKIVGETTMRIAEGVGTSLQLAAMLARMITAVEN 357
>gi|383858073|ref|XP_003704527.1| PREDICTED: replication factor C subunit 2-like [Megachile
rotundata]
Length = 351
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 168/287 (58%), Gaps = 9/287 (3%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K+K + + PW+EKYRP+ D+ E+ V L+ + NCP+++ GPPG GKTT
Sbjct: 25 KKKQKDLKTAHLPWIEKYRPQVFSDIVGNEDTVSRLSVFAKNGNCPNIIIAGPPGVGKTT 84
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
T L +A L GP +K VLELNAS+DRGI+VVR KIK FA Q+R +K
Sbjct: 85 TILCLARILLGPA-FKEAVLELNASNDRGIDVVRNKIKMFA-------QKRVNLDKGKHK 136
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
IIILDEADSMT+ AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ L++
Sbjct: 137 IIILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYGKLTDA 196
Query: 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+ +++L +C +E ++ + L + +QGD+R+A+ LQ FG + S+++ V
Sbjct: 197 QVLAKILEVCQKENVSYTDDGLEAIVFTAQGDMRQALNNLQSTYNGFG-HVNSENVFKVC 255
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
P +V+ + C + A + + ++ GY A L+S +F V
Sbjct: 256 DEPHPLLVKEMLEFCTQSNIGKAYQVLQHLWKMGYSAEDLISNIFRV 302
>gi|325186968|emb|CCA21512.1| replication factor C subunit 2 putative [Albugo laibachii Nc14]
Length = 327
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 168/311 (54%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +E + L N +++ GPPGTGKTT+ L +A L GP
Sbjct: 8 PWVEKYRPTSLDDVVANQETITCLKAMARDGNMTNIILSGPPGTGKTTSILCLARALLGP 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K +LELNASDDRGI+ VRTKIK FA Q++ P +K+IILDEADS+T
Sbjct: 68 AL-KHAILELNASDDRGIDTVRTKIKLFA-------QQKVNLPPGRHKLIILDEADSITG 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA RF L E++ R+L IC E
Sbjct: 120 SAQQALRRTMEIYSSTTRFALACNNSTKIIEPIQSRCAILRFTRLKNELILERLLIICRE 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L + L+ + ++GD+R AI LQ FG +IT ++ P +++ +
Sbjct: 180 ERLTYQDDGLAAIIFTAEGDMRNAINNLQATHAGFG-AITDANVFKACDQPHPGIIKKML 238
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C + A + ++ GY L+ +F V E + + Q K + C
Sbjct: 239 EECIESNLTAAETHLFGLVRAGYSTFDLIETIFRVCKSLE-MDENLQLEFIKQIGVTHMC 297
Query: 350 LVDGADEYLQL 360
+ DG LQ+
Sbjct: 298 IADGLSSVLQI 308
>gi|255931513|ref|XP_002557313.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581932|emb|CAP80071.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 352
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 173/311 (55%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E V L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPQGRHKLVILDEADSMTA 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 141 GAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLMQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVQHSEDGIAALVFSAEGDMRQAINNLQSTWSGFG-FVSGDNVFRVVDSPHPVKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D+A + +N + GY A ++S +F V +S+ + + +
Sbjct: 260 KACWEGKVDVALEGLNELWTLGYSAHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMR 319
Query: 350 LVDGADEYLQL 360
++DG LQL
Sbjct: 320 ILDGVQSLLQL 330
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 194/334 (58%), Gaps = 16/334 (4%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
S+PE+ + K+ + PWVEKYRP+ + D+ ++++ + + PH+L
Sbjct: 4 SAPEQQQSAATAKIRNL-----PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLL 58
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
YGPPGTGKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ + +
Sbjct: 59 YGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFK 116
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
+G +K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC
Sbjct: 117 KG------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+FRF PL+ E+M R+ H+ EE + + + + L ++S GD+RRA+ LQ FG
Sbjct: 171 RFRFGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRRALNILQSTNMAFG-K 229
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVV 326
+T + + + +G + + + DF A + + + +G +L+++ + V
Sbjct: 230 VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEI-HLFV 288
Query: 327 ETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
D + + +A+++ L G +E +QL
Sbjct: 289 HRVDFPTSVRIHLLTKMADIEYRLSVGTNEKIQL 322
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|449016080|dbj|BAM79482.1| replication factor C subunit 2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 178/327 (54%), Gaps = 14/327 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPW+EKYRP+ + +V + VV L + N PH+L GPPG GKTT ALA+A G
Sbjct: 5 QPWIEKYRPRTLSEVVGNQPVVERLRALALSGNVPHLLLVGPPGVGKTTVALALARDTLG 64
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
L + VLELNASD+RGI+VVR KIK F Q+ P +K+IILDEADSMT
Sbjct: 65 DALIQQAVLELNASDERGIDVVRNKIKMFC-------QQHVTLPPGRHKLIILDEADSMT 117
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRR ME YS TRF N S+IIEP+ SRCA RF+ L +E + SR++ +
Sbjct: 118 PAAQQALRRIMELYSSTTRFALAANVSSKIIEPIQSRCAVIRFRRLGDEAVRSRLVSVLE 177
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EE + + + + T+ + GD+R+A+ Q FG IT++ ++ V P +
Sbjct: 178 EEHVPYEPDGIETIVFTADGDMRQALNNAQATWFGFG-VITTEHVLRVCDSPSPARLRRF 236
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV------VVETEDISDEQQARICKC 342
+C + F+ A E+ I GY AS L++ LF V + E + + + +
Sbjct: 237 LELCETQKFEQAVGEIEAIWRSGYAASDLVATLFRVARTQAMITEGGERGRDLRLEFLRE 296
Query: 343 LAEVDKCLVDGADEYLQLLDVASNVIR 369
+ + DG LQL +AS ++R
Sbjct: 297 IGLTHMRITDGLSSLLQLTALASKLVR 323
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|270015972|gb|EFA12420.1| replication factor C 40kD subunit [Tribolium castaneum]
Length = 512
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 183/323 (56%), Gaps = 14/323 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ +++ E+ L+ + N P+++ GPPG GKTTT L +A L GP
Sbjct: 195 PWIEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARILLGP 254
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDE DSMTE
Sbjct: 255 A-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIIILDEVDSMTE 306
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CNY ++IE + SRCA R+ L++ + +RV+ +C +
Sbjct: 307 GAQQALRRTMEIYSNTTRFALACNYSEKVIEAIQSRCAILRYSRLTDAQVLARVIQVCQQ 366
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L + +QGD+R+A+ LQ FG + S +++ V P +++ +
Sbjct: 367 ESVEYTQDGLEAIVFTAQGDMRQALNNLQSTFNGFG-VVNSTNVLKVCDEPHPMLIKDML 425
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C +GD A K V+++ + GY A ++ +F V + D+ + + K +
Sbjct: 426 NSCVTGDVRKAFKIVDHLWSLGYAAEDIIKNIFK-VCKNMDMEESLKLAFIKQIGVTHMR 484
Query: 350 LVDGADEYLQLLDVASNVIRAVC 372
+VDG +Q+ S +I +C
Sbjct: 485 IVDGLCSLVQM----SGLISRLC 503
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 187/311 (60%), Gaps = 12/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ DF A +++ + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRKLKTL--KGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEYR 308
Query: 350 LVDGADEYLQL 360
L G +E +QL
Sbjct: 309 LSVGTNEKIQL 319
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|405964852|gb|EKC30294.1| Replication factor C subunit 2 [Crassostrea gigas]
Length = 344
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 186/330 (56%), Gaps = 10/330 (3%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
E E V K + QPWVEKYRP ++ D+ EE + L N P+++ GP
Sbjct: 7 EIDETPVATKSSGNPHHEQPWVEKYRPVKLHDIVGNEETISRLEVFGRDGNVPNVIIAGP 66
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKTT+ L +A + GP Y+ VLE+NAS+DRGI+VVR KIK FA Q++
Sbjct: 67 PGTGKTTSILCLARAMLGPS-YRDAVLEMNASNDRGIDVVRNKIKMFA-------QQKVT 118
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN +IIEP+ SRCA R
Sbjct: 119 LPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLR 178
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
+ L++ + R+L +C E ++ + L + +QGD+R+A+ LQ + FG + S
Sbjct: 179 YSKLTDAQVLKRLLEVCEAEAVSYTDDGLEAIVFTAQGDMRQALNNLQSTFQGFG-HVNS 237
Query: 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETED 330
+++ V P +++ + C +G+ + A K + ++ GY A +++ +F V + ++
Sbjct: 238 ENVFKVCDEPHPMLIQDMLQHCVNGNVEEAYKTMAHLWKLGYSADDIITIIFR-VCKNQN 296
Query: 331 ISDEQQARICKCLAEVDKCLVDGADEYLQL 360
I + + K + + +G LQ+
Sbjct: 297 IPEFLKLEFIKEIGYTHMRIAEGVQSLLQM 326
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 193/345 (55%), Gaps = 26/345 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +E+ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPATLSDVSGHQDILATINKFIESNRLPHLLFYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI VVR +IKTFA+ +GS R G +K+IIL
Sbjct: 99 IYGAENMRQMVLELNASDDRGIEVVREQIKTFASTKQIFTMGSSAGRAGIAA--FKLIIL 156
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ + S
Sbjct: 157 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRS 216
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG-----------------AARLF 264
V + EE + + +A+ +L +S+GD+RRA+ LQ ++
Sbjct: 217 LVDKVIEEENVKITPDAVESLVKLSRGDMRRALNVLQACHASSTPLQLRDGPKIPGDQIV 276
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI--IAEGYPASLLLSQLF 322
+IT++ + + PP+ ++ + S A + N+ I++G + +++ L
Sbjct: 277 RDTITTETIYNCVAAPPPDAIKKILNTLLSTSDVTACLTIINMLKISQGLALADIITSLS 336
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ +V+ E + + LAE++ + GA+E +Q V V
Sbjct: 337 EELVKLE-VKPQVMITWLDALAEIEYRVASGANEAIQTAAVVGAV 380
>gi|154322657|ref|XP_001560643.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347837173|emb|CCD51745.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 355
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 183/348 (52%), Gaps = 13/348 (3%)
Query: 27 QSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHML 86
+SS ++ +K V PWVEKYRP + DV E + L + N PH++
Sbjct: 11 ESSTSAAKKALKANTNGVTNYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVI 70
Query: 87 FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
G PG GKTT+ L +A QL G YK VLELNASD+RGI+VVR +IK FA Q
Sbjct: 71 ISGMPGIGKTTSVLCLARQLLGDS-YKEAVLELNASDERGIDVVRNRIKGFA-------Q 122
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
++ P +K++ILDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRC
Sbjct: 123 KKVTLPAGRHKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRC 182
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
A R+ L+++ + R+L I E + + L+ L ++GD+R+AI LQ FG
Sbjct: 183 AILRYARLTDQQVVKRLLQIIETEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFG- 241
Query: 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVV 326
+ ++ V P V+ + C G D A + +N + GY + ++S +F V
Sbjct: 242 LVNGDNVFKVVDSPHPIKVQAMIKACYEGKIDSALETLNELWGLGYSSHDIISTMFRVTK 301
Query: 327 ETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM 374
+S+ + K + +++G LQL S I +C +
Sbjct: 302 TVNTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL----SGCIARLCKL 345
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNRDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 178/326 (54%), Gaps = 6/326 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + D+ EE++ L ++ PH+LFYGPPGTGKT+ L A
Sbjct: 9 KGNMPWVEKYRPATLDDLVSHEEIIATLAKLVKKRRLPHLLFYGPPGTGKTSAILVAARM 68
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
+F P+ S VLELNASDDRGI +VR +I FA G K+IILDEAD
Sbjct: 69 MFTPKQLASMVLELNASDDRGIGIVRDQIMNFAQTKTLHVDENGK---SHIKLIILDEAD 125
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT+DAQNALRR +E +++ RF ICNY+S+II + SRC +FRF PL EE + R+ H
Sbjct: 126 AMTKDAQNALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILPRLRH 185
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I E L L + L ++ GD+RR + LQ A F I + + G P V+
Sbjct: 186 IAKSESLKLTEDGERALMKLAGGDMRRVLNILQSTAMAF-PKIDEESVYLCVGQPLPSVI 244
Query: 286 EGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
E + + + F+ A ++ I + S +L+ + D V + DI + + +A
Sbjct: 245 EDIVRILLNDSFEDAFTKIEGIRCLHAFALSDILASMQDAVYQL-DIPSDVTCLLIAQMA 303
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRA 370
+++ L G + +QL + + + A
Sbjct: 304 QIEYRLARGCTDRMQLAALIAAFVEA 329
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 183/314 (58%), Gaps = 14/314 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 250
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLF---DVVVETEDISDEQQARICKCLAEV 346
+ DF A + NNI+ L L + + V D + + +A++
Sbjct: 251 DWMLNQDFTTAYR--NNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 347 DKCLVDGADEYLQL 360
+ L G E +QL
Sbjct: 309 EYRLAVGTSEKIQL 322
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 186/311 (59%), Gaps = 12/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ DF A +++ + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRKLKTL--KGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEYR 308
Query: 350 LVDGADEYLQL 360
L G E +QL
Sbjct: 309 LSVGTSEKIQL 319
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 177/305 (58%), Gaps = 13/305 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ E + L + + PH+LF GP G GKTT A AIA +++G +
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK+FA + G GY ++II LDEAD++T D
Sbjct: 74 -WRENFLELNASDQRGIDVVRDRIKSFARASFG------GYD---HRIIFLDEADALTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL + + ++ I + E
Sbjct: 124 AQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ L + + L + GD+R+AI LQ AA + G ++ + + +++ PE + +
Sbjct: 184 GIELTDDGVDALVYAADGDMRKAINGLQAAA-VMGGTVDEEAVYTITSTARPEEIREMVT 242
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A ++ ++ + G ++ QL V E D+ + + ++ + + E D
Sbjct: 243 EAMDGDFTAARSQLETLLTDVGIAGGDIIDQLHRSVWEF-DLEEREAVQLMERIGEADYR 301
Query: 350 LVDGA 354
+ GA
Sbjct: 302 ITAGA 306
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|403160320|ref|XP_003320851.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169507|gb|EFP76432.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 182/322 (56%), Gaps = 16/322 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + PWVEKYRP + DV +++++ + + PH+LFYGPPGTGKT+T LA+
Sbjct: 23 PASKEHLPWVEKYRPSTLDDVVSHQDIIQTIQKFISANQLPHLLFYGPPGTGKTSTILAV 82
Query: 103 AHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAA--VAVGSGQRRGGYPCPPYKII 159
A QLF P +K+ +LELNASDDRGI+VVR +IK FA+ + SG +K+I
Sbjct: 83 ARQLFQTPMSFKNNILELNASDDRGIDVVREQIKNFASARMVFSSG----------FKLI 132
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD MT+ AQ+ALRR +E Y+K RF ICNY++RI + SRC +FRF PL +
Sbjct: 133 ILDEADQMTQAAQSALRRVIEQYTKNVRFCIICNYVNRINPAIQSRCTRFRFGPLDHPEI 192
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
R+ H+ + E + + + L ++ +GD+RR + +Q +G + + +G
Sbjct: 193 ERRIAHVADAESVKISDDGRKALLNLCKGDMRRVLNVMQACHSGYG-KVDEDAVYECTGS 251
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
P+ +E + + +F + K + +I I G ++S ++D + T Q
Sbjct: 252 PHPKQIEKIVESMMNDEFQTSFKRIQDIKINYGLALQDIISGIYD-YLRTIVFEKNAQIY 310
Query: 339 ICKCLAEVDKCLVDGADEYLQL 360
I L++++ L GA E +QL
Sbjct: 311 ILDQLSQIEHRLSTGATEKIQL 332
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 185/317 (58%), Gaps = 21/317 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++L + + L +++ GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDLSEDGMKALVTLASGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE------DISDEQQARICKCL 343
+ DF A + + + +L L D++ ET D + + +
Sbjct: 252 DWMLNQDFTTAYRNITEL------KTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKM 305
Query: 344 AEVDKCLVDGADEYLQL 360
A+++ L G +E +QL
Sbjct: 306 ADIEYRLSVGTNEKIQL 322
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 187/311 (60%), Gaps = 12/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 35 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 95 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 147 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 207 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 265
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ DF A +++ + +G +L+++ + V D + + +A+++
Sbjct: 266 DWMLNQDFTTAYRKLKTL--KGLALHDILTEIH-LFVHRVDFPSSVRIHLLTKMADIEYR 322
Query: 350 LVDGADEYLQL 360
L G +E +QL
Sbjct: 323 LSVGTNEKIQL 333
>gi|224013894|ref|XP_002296611.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220968963|gb|EED87307.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 336
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 126/322 (39%), Positives = 178/322 (55%), Gaps = 10/322 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV E+ + L E N P+++ GPPGTGKTT+ A+A QL G
Sbjct: 19 PWVEKYRPRNLDDVVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGS 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASD RGI+VVR KIK FA V P +KIIILDEADSMT
Sbjct: 79 A-YSNGVLELNASDSRGIDVVRNKIKGFAMNKVN-------LPVGRHKIIILDEADSMTS 130
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SR A R+ L++E + +R+ +C E
Sbjct: 131 AAQQALRRTMEIYSNTTRFALACNVSTKIIEPIQSRAAILRYSRLTDEQILNRLKFVCGE 190
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++ D L + ++GD+R A+ +Q F ++ ++ V P+ V G+
Sbjct: 191 EEVSYDDGGLEAIIFTAEGDMRNALNNIQATVSGF-EHVSQTNVFKVCDQPHPKTVRGIL 249
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD A EV N+ GY S ++ LF V ++ ++ + + + +
Sbjct: 250 DSCIKGDTTKAVVEVRNLWNTGYSCSDIIGTLFK-VAKSYEMPEALKLEYLREIGFTHMR 308
Query: 350 LVDGADEYLQLLDVASNVIRAV 371
+ DG LQLL +A+ + + V
Sbjct: 309 IADGVGTLLQLLGLAARLCQKV 330
>gi|340056431|emb|CCC50763.1| putative replication factor C, subunit 3 [Trypanosoma vivax Y486]
Length = 374
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 181/319 (56%), Gaps = 14/319 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + +V EE++ +++ + PH LFYGPPGTGKTTT A AH LF
Sbjct: 37 SLPWVEKYRPSTLDEVVAHEEILSTTRRLIDSGSMPHFLFYGPPGTGKTTTVKACAHYLF 96
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ VLE+NASDDRGI+VVR +++ FA+ + P +K++ILDEAD M
Sbjct: 97 GKERVRANVLEMNASDDRGIDVVRQQVREFASTS-SIFCTNSSNPVSSFKLVILDEADQM 155
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
+ DAQ ALRR +E Y+K RF ICN I++II L SRC +FRF P+ + M R+ +
Sbjct: 156 SGDAQAALRRIIEKYTKNVRFCIICNRINKIIPALQSRCTRFRFAPVKKGAMLPRLKFVV 215
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
EEG+ E L+ + GD+RR + +Q +A + +T + + +G P V G
Sbjct: 216 QEEGVRFTEEGLAAAFRLCNGDMRRCLNIMQSSA-MSAGEVTEESVYRTTGNPTPAEVRG 274
Query: 288 LFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC---- 342
+ + D+ L+ +++ +I +G A+ L+ ++ +V+ + D CKC
Sbjct: 275 IVEDMLAHDYALSWEKMQQAVIEKGVSATDLVREVHHIVMAMDLPVD------CKCFLLT 328
Query: 343 -LAEVDKCLVDGADEYLQL 360
LA+V+ G E + +
Sbjct: 329 KLADVEYYAASGTRESINI 347
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 185/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 192 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANIL 250
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A K + + +G +L+++ + V D + + +A+++
Sbjct: 251 DWMLNQDFTTAYKSIMELKTLKGLALHDILTEV-HLFVHRVDFPSSVRIHLLTKMADIEY 309
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 310 RLSVGTSEKIQL 321
>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
Length = 332
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 141/215 (65%), Gaps = 8/215 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTITRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSS 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y++ RF ICNY+S+II L SRC +FRF PLS E M R+ I E
Sbjct: 124 DAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSAEQMLPRLNQIVQE 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
E +N+ + + L ++S+GD+R+ + LQ + F
Sbjct: 184 EHVNVTDDGKNALLTLSKGDMRKVLNVLQSTSMAF 218
>gi|91095205|ref|XP_967947.1| PREDICTED: similar to replication factor C subunit 2 [Tribolium
castaneum]
Length = 344
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 183/323 (56%), Gaps = 14/323 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ +++ E+ L+ + N P+++ GPPG GKTTT L +A L GP
Sbjct: 27 PWIEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARILLGP 86
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDE DSMTE
Sbjct: 87 A-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIIILDEVDSMTE 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CNY ++IE + SRCA R+ L++ + +RV+ +C +
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACNYSEKVIEAIQSRCAILRYSRLTDAQVLARVIQVCQQ 198
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L + +QGD+R+A+ LQ FG + S +++ V P +++ +
Sbjct: 199 ESVEYTQDGLEAIVFTAQGDMRQALNNLQSTFNGFG-VVNSTNVLKVCDEPHPMLIKDML 257
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C +GD A K V+++ + GY A ++ +F V + D+ + + K +
Sbjct: 258 NSCVTGDVRKAFKIVDHLWSLGYAAEDIIKNIFK-VCKNMDMEESLKLAFIKQIGVTHMR 316
Query: 350 LVDGADEYLQLLDVASNVIRAVC 372
+VDG +Q+ S +I +C
Sbjct: 317 IVDGLCSLVQM----SGLISRLC 335
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 187/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G + +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNIMELKTLKGLALNDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFATAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|407408177|gb|EKF31712.1| replication factor C, subunit 3, putative [Trypanosoma cruzi
marinkellei]
Length = 355
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 178/314 (56%), Gaps = 2/314 (0%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
V S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A
Sbjct: 13 VKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACA 72
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILD 162
+ LFG + ++ VLE+NASDDRGI+VVR +++ FA+ + +K++ILD
Sbjct: 73 YYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAASTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD M+ DAQ ALRR +E Y+K RF +CN+I++II L SRC +FRF P+ + M R
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKNAMLPR 192
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ + EEG+ L +S GDLRR + +Q +A G IT + + V+G P
Sbjct: 193 LKFVAQEEGVRFTDGGLVAAFRLSNGDLRRCLNTMQASAMSAG-EITEESVYRVTGNPTP 251
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
V G+ + DF + ++V ++E +S L + +V D+ E + +
Sbjct: 252 ADVRGIVEDMIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMK 311
Query: 343 LAEVDKCLVDGADE 356
LA+V+ GA E
Sbjct: 312 LADVEYYAAGGAKE 325
>gi|358389695|gb|EHK27287.1| hypothetical protein TRIVIDRAFT_82171 [Trichoderma virens Gv29-8]
Length = 357
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 181/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R++ I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLMQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + +GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGNVDSALDTLRELWDKGYSSHDIISTMFKVTKTMPTLSEHSKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G LQL S + +C + P+ F+
Sbjct: 325 ILEGVQTLLQL----SGCVARLCKLNMDPKRFK 353
>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
Length = 353
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 177/314 (56%), Gaps = 12/314 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + D+ +E++ L ++ PH+LFYGPPGTGKT+ +A A +L+
Sbjct: 27 SWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLY 86
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G Y S VLELNASDDRGI+VVR +IK FA Q K+IILDEADSM
Sbjct: 87 GKN-YGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQ--------GVKLIILDEADSM 137
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ +LRR +E Y+K RF ICNY+S+II L SRC +FRF PL+E +S RV HI
Sbjct: 138 TNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNESQVSGRVKHIA 197
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
E LN+ + + + QGD+RR + LQ A + + ++ +G P+ +E
Sbjct: 198 QLEKLNMTEDGFKAILRLGQGDMRRILNILQ-ATSMAHDIVDEANVYLCTGNPLPKDIES 256
Query: 288 LFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + F A ++ + +GY S +L ++ E E + + + LA++
Sbjct: 257 VTQWLFNESFTAAVRKCAEMQKLKGYATSDILQDVYRYTTELE-LPPRCRMYLYDELAKL 315
Query: 347 DKCLVDGADEYLQL 360
+ L +G E LQL
Sbjct: 316 EHRLSNGTTEELQL 329
>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
Length = 332
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y++ RF ICNY+S+II L SRC +FRF PLS E M R+ + E
Sbjct: 124 DAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQMMPRLNKVVEE 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +N+ + L ++++GD+R+ + LQ + F + V + E+ L
Sbjct: 184 ENVNITDDGKKALLTLAKGDMRKVLNVLQSTSMAFDVVNEDNVYMCVGYPLRSEIENVLQ 243
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ + FD A + ++ G ++++L ++ E I K LAE+++
Sbjct: 244 TLLSAATFDSAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIIK-LAEIEE 302
Query: 349 CLVDGADEYLQ 359
L G E Q
Sbjct: 303 RLTKGCSETAQ 313
>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 357
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 182/324 (56%), Gaps = 12/324 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P S+ PWVEKYRP + DV EE++ + + + PH+LFYGPPGTGKTTT A
Sbjct: 12 PAKNSTLPWVEKYRPTTLDDVVAHEEILDTTRRLMNSGSMPHLLFYGPPGTGKTTTIKAC 71
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR-GGYPCPPYKIIIL 161
AH LFG E ++ VLE+NASDDRGI+VVR +++ FA+ + Q G +K++IL
Sbjct: 72 AHHLFGKERLRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQNNPGNQTVTNFKLVIL 131
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD M+ DAQ ALRR +E ++K RF +CN+I++II L SRC +FRF P+ + M
Sbjct: 132 DEADQMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPALQSRCTRFRFSPVKKSAMLP 191
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP 281
R+ I EEG+ E L + +S GD+RR + +Q A+ + IT + + +G
Sbjct: 192 RLKLIAREEGVPFTDEGLISAFRLSDGDMRRCLNTMQ-ASSMSAGEITEESVYRTTGNPT 250
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
P V + S ++ + ++V ++ + ++ L + ++V D+ + CK
Sbjct: 251 PTDVRVMVGDMLSHNYATSWEKVQQLVVDKGVSTADLVREVHLIVMAMDLPQD-----CK 305
Query: 342 C-----LAEVDKCLVDGADEYLQL 360
C LA+V+ G E + +
Sbjct: 306 CFLLIKLADVEYYAAGGTREMINI 329
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 185/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 192 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANIL 250
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A K + + +G +L+++ + V D + + +A+++
Sbjct: 251 DWMLNQDFTTAYKNIMELKTLKGLALHDILTEV-HLFVHRVDFPSSVRIHLLTKMADIEY 309
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 310 RLSVGTSEKIQL 321
>gi|268576228|ref|XP_002643094.1| C. briggsae CBR-RFC-2 protein [Caenorhabditis briggsae]
Length = 328
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 184/323 (56%), Gaps = 12/323 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E +V L + N P+++ GPPG GKTT+ A+A +L G
Sbjct: 11 PWVEKYRPQILADIVGNENIVERLKVIAKEGNVPNIILSGPPGCGKTTSVWALARELLGD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ K VLELNASD+RGI+VVR +IKTFA Q R P +KIIILDEADSMTE
Sbjct: 71 KV-KDAVLELNASDERGIDVVRNRIKTFA-------QTRVTLPEGRHKIIILDEADSMTE 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L+ + SRV+ +
Sbjct: 123 GAQQALRRTMEIYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLTAAELMSRVVEVAKA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +N D L + +QGD+R+A+ LQ + + ++++ V P+++ +
Sbjct: 183 EDVNHDDGGLEAILFTAQGDMRQALNNLQATVNAY-EQVNKENVLKVCDEPHPDLMIKML 241
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE---DISDEQQARICKCLAEV 346
A C G F A+K V+ G+ + ++S LF VV E ++++ + + +A
Sbjct: 242 AYCVDGKFFEASKIVHEFHRLGFSSDDIVSTLFRVVKTVELSKRVNEQLRQEFIREIAMC 301
Query: 347 DKCLVDGADEYLQLLDVASNVIR 369
++ G LQL + +++ R
Sbjct: 302 HMRIIQGLSSKLQLSRLVADLCR 324
>gi|401403730|ref|XP_003881552.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
gi|325115965|emb|CBZ51519.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
Length = 403
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 197/376 (52%), Gaps = 37/376 (9%)
Query: 25 TTQSSPEKSE--DEVKRKMAP--VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
T SP +E + K+ P + + + PWVEKYRP+++ DV ++++R + + +E
Sbjct: 8 TNSDSPRSAEASERPASKLPPHGLSERALPWVEKYRPERLDDVLAHDDIIRTIRHYVEKG 67
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-- 138
PH+LF+GPPGTGKT+T LA+A + +G + ++ VLELNASDDRGIN VR +IKTFA
Sbjct: 68 QLPHLLFHGPPGTGKTSTILAVAKEFYGSAV-RTHVLELNASDDRGINTVREQIKTFAET 126
Query: 139 ---------------------------AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
A ++ Q + G P K+IILDEAD MT A
Sbjct: 127 SSTSFHGQGRLMFGKPAAPTASAEKEEASSLAQSQEKRGGAGPSLKLIILDEADQMTNAA 186
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
QNALRR ME Y++ RF ICN+I++I + SRC FRF P+S + + I EE
Sbjct: 187 QNALRRIMEAYARNVRFCLICNFINKITPAIQSRCTGFRFTPVSSLSLKQKAAQIAEEET 246
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS-GVIPPEVVEGLFA 290
+ L + L L I++GD+RR + +Q + + + D++ + G+ PP V +F
Sbjct: 247 MKLSDDGLDALVKIARGDMRRLLNCMQASHLAHPGEVVNADIVHRTLGLPPPSEVTAMFE 306
Query: 291 VCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
DF KE++ ++ +GY + + ++ D LA++++
Sbjct: 307 RLLVADFFACCKELDELVNTKGYAMRDWVIAFHERILRV-DWPVNVLITFVSRLADLEER 365
Query: 350 LVDGADEYLQLLDVAS 365
L GA E +Q+ V +
Sbjct: 366 LATGASEAVQMHAVVA 381
>gi|389751171|gb|EIM92244.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 343
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 187/333 (56%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV + + L N PH++ G PG GKTT+ +AHQL G
Sbjct: 23 PWVEKYRPNILDDVVGNSDTIDRLKVIARDGNVPHLIISGMPGIGKTTSIHCLAHQLLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPGRHKIVILDEADSMTA 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L + + R+L IC+
Sbjct: 135 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDAEILKRLLEICDI 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L+ L S+GD+R+AI LQ FG ++S ++ V P +V+ +
Sbjct: 195 EKVEYNDDGLTALIFTSEGDMRQAINNLQSTWSGFG-FVSSDNVFKVCDQPHPIIVQTII 253
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C + DLA ++++ + +GY A ++ +F VV +++ + + K +
Sbjct: 254 RACMKSNVDLAMEKLSELWGQGYSAVDIIVTIFRVVKTFDELPEYTKLEYIKEIGFTHMR 313
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G +QL + +I +C + P+ F+
Sbjct: 314 ILEGVGTLIQL----AGLIARLCKLNMKPDMFK 342
>gi|346466437|gb|AEO33063.1| hypothetical protein [Amblyomma maculatum]
Length = 377
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 174/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ EE + L N P+++ GPPG GKTTT L +A L GP
Sbjct: 60 PWVEKYRPAKFSEIVGNEETIARLEIFSREGNVPNVILSGPPGVGKTTTILCLARILLGP 119
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMTE
Sbjct: 120 S-FREAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPPGKHKIIILDEADSMTE 171
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA RF L++ + +++L IC
Sbjct: 172 GAQQALRRTMEIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLTDAQILAKLLDICKR 231
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L L +QGD+R+AI LQ FG + S+++ V PE ++ +
Sbjct: 232 EDASYVEDGLEALVFTAQGDMRQAINNLQSTVVGFG-HVNSQNVFKVCDEPHPEQIKDML 290
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A K + ++ GY A ++ +F V ++ D+ D+ + K +
Sbjct: 291 QHCVDGQLDNAYKIMLHMWKLGYAAEDIIVNIFR-VCKSHDMRDDIKLEFIKEIGYTQMR 349
Query: 350 LVDGADEYLQL 360
+ G LQ+
Sbjct: 350 TLQGVHSLLQM 360
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 185/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVGISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNRDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 186/311 (59%), Gaps = 12/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 250
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ DF A +++ + +G +L+++ + V D + + +A+++
Sbjct: 251 DWMLNQDFTTAYRKLKTL--KGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEYR 307
Query: 350 LVDGADEYLQL 360
L G E +QL
Sbjct: 308 LSVGTSEKIQL 318
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 184/312 (58%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 16 PWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKD 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 76 REFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS E+M R+ H+ E
Sbjct: 128 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPRLEHVVKE 187
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RR++ LQ +G +T + + +G + +
Sbjct: 188 ECVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYG-KVTEDTVYTCTGHPLRSDIANIL 246
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A K + + +G +L+++ + V D + + +A+V+
Sbjct: 247 DWMLNKDFTSAYKNIMELKTLKGLALHDILTEVH-LYVHRVDFPASVRMHLLIKMADVEY 305
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 306 RLASGTSEKIQL 317
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 22 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 82 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 134 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGE 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 194 ENVDITEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVHTCTGHPLRSDIANIL 252
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 253 DWMLNQDFTTAYRNIMELKTLKGLALHDILTEI-HLFVHRVDFPSSVRVHLLTKMADIEY 311
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 312 RLSVGTNEKIQL 323
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 200/339 (58%), Gaps = 14/339 (4%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
F+ S+P++ +++ + A + PWVEKYRP+ + D+ ++++ + +
Sbjct: 113 FAMEASAPKQQQEQ---QPAGTKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRL 169
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PH+LFYGPPGTGKT+T LA A +L+ + + S VLELNASDDRGI++VR I +FA+
Sbjct: 170 PHLLFYGPPGTGKTSTILACAKRLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTR- 228
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ ++G +K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L
Sbjct: 229 -TIFKKG------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPAL 281
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
SRC +FRF PL+ E+M R+ H+ EE +++ + + L ++S GD+RRA+ LQ
Sbjct: 282 QSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNM 341
Query: 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQL 321
FG +T + + + +G + + + DF A + + + +G +L+++
Sbjct: 342 AFG-KVTEETVYTCTGHPLKSDIANILDWMLNHDFTTAYRNIMELKTLKGLALHDILTEI 400
Query: 322 FDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+ V D + + +A+++ L G +E +QL
Sbjct: 401 -HLFVHRVDFPSSVRIYLLTKMADIEYRLSVGTNEKIQL 438
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 189/320 (59%), Gaps = 12/320 (3%)
Query: 43 PVLQSSQ-PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
PV +S PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA
Sbjct: 16 PVTKSRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 75
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
A QL+ + + S VLELNASDDRGI++VR I +FA+ + ++G +K++IL
Sbjct: 76 CAKQLYKDKEFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVIL 127
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M
Sbjct: 128 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 187
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP 281
R+ H+ EE +++ + + L ++S GD+RRA+ LQ FG +T + + + +G
Sbjct: 188 RLEHVIEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPL 246
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
+ + + DF A + + + +G +L+++ + V D + +
Sbjct: 247 KTDIANILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEI-HLFVHRVDFPPAVRIHLL 305
Query: 341 KCLAEVDKCLVDGADEYLQL 360
+A+++ L G E +QL
Sbjct: 306 IKMADIEHRLAVGTSEKIQL 325
>gi|427781667|gb|JAA56285.1| Putative replication factor c activator 1 2 [Rhipicephalus
pulchellus]
Length = 337
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 174/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ EE + L N P+++ GPPG GKTTT L +A L GP
Sbjct: 20 PWVEKYRPVKFTEIVGNEETIARLEVFSREGNVPNVILSGPPGVGKTTTILCLARILLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMTE
Sbjct: 80 A-FREAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPPGKHKIIILDEADSMTE 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA RF L++ + +++L +C
Sbjct: 132 GAQQALRRTMEIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLTDAQVLAKLLDVCQR 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L L +QGD+R+AI LQ FG + S+++ V PE ++ +
Sbjct: 192 ENASYSEDGLEALVFTAQGDMRQAINNLQSTVVGFG-HVNSQNVFKVCDEPHPEQIKDML 250
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A K + ++ GY A ++ +F V ++ DI ++ + K +
Sbjct: 251 QYCVDGQLDNAYKIMLHMWKLGYAAEDIIVNVFR-VCKSHDIREDIKLEFIKEIGYTQMR 309
Query: 350 LVDGADEYLQL 360
+ G LQ+
Sbjct: 310 TLQGVHSLLQM 320
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 184/317 (58%), Gaps = 12/317 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ S W EKYRPK + +V QE++VR L + ++T N PH+LF GPPG GKT A+A+A
Sbjct: 11 MASDDVWTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAK 70
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+FG + +++ ELNASD+RGI+VVR IK FA A R +KII LDEA
Sbjct: 71 DMFG-DTWQNNFTELNASDERGIDVVRNNIKNFARTAPLGDAR--------FKIIFLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF PL + + +
Sbjct: 122 DALTSDAQSALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLGPKDIETMAR 181
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
I EG+ + + L + +++GD+RRA+ LQ A+ + IT++ + + P+
Sbjct: 182 RIEKGEGIKITKDGLDAIIYVARGDMRRAVNALQSASTV-SKDITAEAVYETTSTARPKE 240
Query: 285 VEGLFAVCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+E + + +G F D NK + +I G S ++ Q++ + + ++ + +
Sbjct: 241 IEEMLKLALNGQFMDSRNKLDDLLIKYGLSGSDIIDQIYASMFSL-GLDEDVLVALVDRI 299
Query: 344 AEVDKCLVDGADEYLQL 360
E D L +G +E +Q+
Sbjct: 300 GEADFRLTEGGNERIQV 316
>gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p
[Cryptococcus gattii WM276]
gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative;
Rfc3p [Cryptococcus gattii WM276]
Length = 347
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 174/311 (55%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + V L E N PH++ G PG GKTT+ +AH L G
Sbjct: 27 PWVEKYRPVLLDDIVGNSDTVERLKVIAEDGNLPHIIISGMPGIGKTTSIHCLAHALLG- 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L++ + R+ IC+
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDM 198
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L+ L ++GD+R+AI LQ FG ++ ++ + P V+ +
Sbjct: 199 ESVKYNDEGLAALIFTAEGDMRQAINNLQSTWSGFG-FVSQDNVFKICDQPHPIVIRQMI 257
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ G D A VN + +GY A ++ +F VV E++ + + + +
Sbjct: 258 KDCQYGKIDEALARVNALWDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWTHMR 317
Query: 350 LVDGADEYLQL 360
+++G +QL
Sbjct: 318 ILEGVGTLVQL 328
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 185/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNIMELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 311 RLSVGTSEKIQL 322
>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 333
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 182/327 (55%), Gaps = 14/327 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ ++VV L + N P+++F GPPGTGKTT+ LA+AH+L GP
Sbjct: 17 PWVEKYRPHRVADIVGNQDVVARLQVIAQGGNMPNLIFSGPPGTGKTTSILALAHELLGP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNASDDRGI+VVR KIK FA Q++ P +K+++LDEADSMT
Sbjct: 77 N-FKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVLLDEADSMTA 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+ + R+L +
Sbjct: 129 GAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLSDSEILDRLLRVVEA 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F + ++ V P + + +
Sbjct: 189 EKVPYVPEGLEAVVFTADGDMRQALNNLQATFSGF-QFVNQDNVFRVCDQPHPLLAQQII 247
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C +G+ D A + + GY A+ +++ LF VV E + + + + +
Sbjct: 248 KHCIAGNIDDAYTGLKQLYDMGYSATDIITTLFRVVKNYE-MVEFLKLEFIREVGFAHMR 306
Query: 350 LVDGADEYLQLLDVASNVIRAVCNMPE 376
+ DG LQL S ++ +C + E
Sbjct: 307 IADGVGTLLQL----SGLLAKLCKVRE 329
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 183/314 (58%), Gaps = 12/314 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLF---DVVVETEDISDEQQARICKCLAEV 346
+ DF A + + I+ L L + + V D + + +A++
Sbjct: 252 EWMLNQDFTTAYRNILYIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADI 311
Query: 347 DKCLVDGADEYLQL 360
+ L G +E +QL
Sbjct: 312 EYRLSLGTNEKIQL 325
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 185/316 (58%), Gaps = 15/316 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ E++V + ++ + PHMLFYGPPGTGKT+ LA + ++FG
Sbjct: 16 PWVEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFG- 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILDEADS 166
E S VLELNASDDRGI+V R +I FA+ +A+ +G +K+IILDEAD+
Sbjct: 75 ETSNSSVLELNASDDRGIDVARGRILNFASTKRIAIQAG-------TASFKLIILDEADA 127
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQNALRR +E ++ RF ICNY+S+II L SRC +FRF PL+ E + R+ +
Sbjct: 128 MTNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQILPRLQAV 187
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
EE L + + L ++++GD+RR + LQ + F I ++ + +G PP +
Sbjct: 188 VKEESLEMSPDGAKALLTLAKGDMRRILNILQSCSMAF-PVINESNIYACTGHPPPSDIS 246
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASL--LLSQLFDVVVETEDISDEQQARICKCLA 344
+ D A + ++ + SL +L++L ++V +IS+ + ++ LA
Sbjct: 247 LALESLLNDDLQKAYQTIHVQLQTTKGLSLIDILTELH-LLVHRLEISNRVKVKLLIKLA 305
Query: 345 EVDKCLVDGADEYLQL 360
+ + L+ G E +QL
Sbjct: 306 DAEHRLLSGTSEKIQL 321
>gi|225554309|gb|EEH02609.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240277074|gb|EER40584.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H143]
gi|325095015|gb|EGC48325.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H88]
Length = 354
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 187/356 (52%), Gaps = 17/356 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQ-----PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
PE S + KR + L + PWVEKYRP + D+ E + L N PH
Sbjct: 4 PESSSAQAKRGLQENLAGAPADYELPWVEKYRPVFLDDIVGNTETIERLKIIARNGNMPH 63
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++ G PG GKTT+ L +A Q+ G + YK VLELNASD+RGI+VVR +IK FA
Sbjct: 64 VIISGMPGIGKTTSILCLARQMLG-DSYKEAVLELNASDERGIDVVRNRIKGFA------ 116
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q++ P +K++ILDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL S
Sbjct: 117 -QKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQS 175
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA R+ L++ + R+ IC E + + L L ++GD+R+AI LQ F
Sbjct: 176 RCAILRYARLTDGQILKRLTQICEAEKVKYSEDGLEALIFSAEGDMRQAINNLQSTWAGF 235
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
G ++ +++ V P V+ + C G D A +N + GY + ++S +F V
Sbjct: 236 G-FVSGENVFRVVDSPHPVKVQAMIKACWEGKIDAALDSLNELWDLGYSSHDIISTMFRV 294
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
+S+ + K + +++G +QL + + R NM PE FQ
Sbjct: 295 TKTMPTLSEHTRLEFIKEIGFTHMRILEGVQTLVQLSGCLAKLCR--INMKPESFQ 348
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 188/322 (58%), Gaps = 11/322 (3%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
K PV + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T
Sbjct: 6 KGQPVQSRNLPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTI 65
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
LA A QL+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++
Sbjct: 66 LACAKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLV 117
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS ++M
Sbjct: 118 ILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMM 177
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
R+ H+ EE +++ + + L ++S GD+RR++ LQ +G +T + + +G
Sbjct: 178 IPRLEHVVKEERVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYG-KVTEDTVYTCTGH 236
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
+ + + DF A K + + +G +L+++ + V + +
Sbjct: 237 PLRSDIANILDWMLNKDFTSAYKNIMELKTLKGLALHDILTEVH-LYVHRVNFPASVRMH 295
Query: 339 ICKCLAEVDKCLVDGADEYLQL 360
+ +A+++ L G E +QL
Sbjct: 296 LLVKMADIEYRLASGTSEKIQL 317
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 178/314 (56%), Gaps = 17/314 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E++ + ++ PH+LFYGPPGTGKT+T LA+A QL+ P
Sbjct: 11 PWVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA--VAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR I FA+ SG +K++ILDEAD+M
Sbjct: 71 KEFNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSG----------FKLVILDEADAM 120
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ TRF FICNY+S+II L SRC +FRF PL + + R+ +
Sbjct: 121 TNDAQNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVPRLEFVV 180
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
EE +++ + L ++++GD+RR I LQ + + +T +++ +G +E
Sbjct: 181 REENVDMTEDGKKALITLAKGDMRRVINILQSTS-MAHEKVTEENVYLCTGHPLRTDIEN 239
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI--CKCLAE 345
+ + DF A +N + + LL L +V I Q+ RI +++
Sbjct: 240 IVNWMLNEDFTAAFNHINQL--KTLKGLALLDILLEVHTYVHRIEFPQKVRIYLLDKMSD 297
Query: 346 VDKCLVDGADEYLQ 359
++ L G E LQ
Sbjct: 298 IEYRLAAGTSEKLQ 311
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 186/323 (57%), Gaps = 14/323 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + PWVEKYRP+++ D+ +++ + + PH+L YGPPGTGKT+T LA
Sbjct: 8 PLQSRNLPWVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTSTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 ARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS + M R
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPR 179
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ H+ EE +++ + + + ++S GD+RR++ LQ + +G +T + + +G
Sbjct: 180 LRHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYG-KVTEDSVYTCTGQPLR 238
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
+ + C + DF A K++ + +G +L++L +V + + K
Sbjct: 239 SDIANILDWCLNKDFTSAYKQILQLKTLKGLALHDILTELHLLVHRVDFPPATRXXXXYK 298
Query: 342 C----LAEVDKCLVDGADEYLQL 360
C L G DE +QL
Sbjct: 299 CADASFFTFRHRLASGTDEKIQL 321
>gi|393244589|gb|EJD52101.1| replication factor C subunit 4 [Auricularia delicata TFB-10046 SS5]
Length = 340
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 185/330 (56%), Gaps = 10/330 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV ++ + L NCPH++ G PG GKTT+ +AH+L G
Sbjct: 20 PWVEKYRPLKLDDVVGNKDTIDRLKVIAREGNCPHIIISGLPGIGKTTSIHCLAHELLG- 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK FA Q++ P +K +ILDEADSMT
Sbjct: 79 DAYKEGVLELNASDERGIDVVRNKIKMFA-------QKKVTLPKGRHKFVILDEADSMTS 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L E + +R+L IC E
Sbjct: 132 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYAKLRNEEIVARLLEICKE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + + L ++GD+R+AI LQ FG + + ++ V P +V+ +
Sbjct: 192 ESVTYNQDGIEALVFTAEGDMRQAINNLQSTFSGFG-FVNAANVFKVCDQPHPTMVQKMM 250
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ G+ + A + + +GY A ++ +F VV +++ + + K +
Sbjct: 251 RSCKEGNINDAMDHLTALWRQGYSAVDIVVTIFRVVKVFDELPEYLKLEFIKEIGFTHMK 310
Query: 350 LVDGADEYLQLLDVASNVIRAVCNMPEEFQ 379
+++G +QL + + + + + PE F+
Sbjct: 311 ILEGVGTLVQLGGLLARLCK-ISMKPELFK 339
>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
Length = 332
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 141/215 (65%), Gaps = 8/215 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y++ RF ICNY+S+II L SRC +FRF PLS E M R+ + E
Sbjct: 124 DAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLNKVIQE 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
E +N+ + + L ++++GD+R+ + LQ + F
Sbjct: 184 ENVNVTDDGKNALLTLAKGDMRKVLNVLQSTSMAF 218
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 22 PWVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 82 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 134 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEE 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ + F S +T + + + +G + +
Sbjct: 194 EKVDVSEDGMKALITLSSGDMRRALNILQSTSMAF-SKVTEETVYTCTGHPLKSDIANIL 252
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 253 DWMLNQDFTTAYRNIMELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 311
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 312 RLSAGTSEKIQL 323
>gi|115655395|ref|XP_790650.2| PREDICTED: replication factor C subunit 2-like [Strongylocentrotus
purpuratus]
Length = 352
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 178/311 (57%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV EE V L N P+++ GPPGTGKTT+ L +A + G
Sbjct: 34 PWVEKYRPTSLSDVVGNEETVSRLEVFSREGNVPNVIIAGPPGTGKTTSILCLARTMLGA 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLE+NAS++RGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 94 S-FKDAVLEMNASNERGIDVVRNKIKMFA-------QKKVTLPKGRHKIIILDEADSMTG 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ A+RRTME +SK TRF CN +IIEP+ SRCA R+ LS+ + R+L IC
Sbjct: 146 AAQQAMRRTMEVFSKTTRFALACNASDKIIEPIQSRCAVLRYSRLSDSQILKRLLEICAA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++ + L + +QGD+R+AI LQ FG SITS+++ V P++++ +
Sbjct: 206 ENVDHAEDGLEAIIYTAQGDMRQAINNLQSTYAGFG-SITSENVFKVCDEPHPQLIKSML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C D D A + ++++ GY A +++ +F +T +++ + K +
Sbjct: 265 DHCVEADIDKAYEIMHHMSHMGYSADDIITNIFR-SCKTHQMAEYVKLEFIKEIGMTHMR 323
Query: 350 LVDGADEYLQL 360
+ +G + LQL
Sbjct: 324 IAEGVNSILQL 334
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 184/314 (58%), Gaps = 15/314 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ ++++ + ++ PH+LFYGPPGTGKTTT LA+A Q++ P
Sbjct: 13 PWVEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLLFYGPPGTGKTTTILAVAKQIYAP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR +I +FA+ SG +K++ILDEAD+M
Sbjct: 73 KEFNSMVLELNASDDRGIGIVRDRILSFASTRTLFKSG----------FKLVILDEADAM 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL E M R+ ++
Sbjct: 123 TNDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLLPEQMKPRLQYVI 182
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E L + + + L +++ GD+RR++ LQ + F +T + + G +E
Sbjct: 183 EQEKLTVSEDGMDALVTLANGDMRRSLNILQSCSMAF-DEVTEHTVYTCVGHPLRSDIEH 241
Query: 288 LFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + F A K + + A+G + +L+++ V D + + + +A+V
Sbjct: 242 IVKWMLNESFTEAYKNILEMQTAKGLALNDVLTEVHHYVHRI-DFPMNVRIHLLEKMADV 300
Query: 347 DKCLVDGADEYLQL 360
+ L G E +QL
Sbjct: 301 EHRLASGTSESIQL 314
>gi|403342743|gb|EJY70695.1| Replication factor C subunit 5 [Oxytricha trifallax]
Length = 324
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 191/328 (58%), Gaps = 19/328 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
P+VEKYRP ++ + +E++ + +ET PH+LF+GPPGTGKT+ +AIA L+G
Sbjct: 6 PFVEKYRPNDLESIISHDEIITTVRRFIETRKMPHLLFHGPPGTGKTSCVIAIAKHLYGK 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK+ +LELNASDDRGINVVR +IK+F + K++ILDE DSMT
Sbjct: 66 AEYKNMILELNASDDRGINVVREQIKSFCSTQ--------QLMSKGIKLVILDECDSMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K TRF FICNY+S+II L SRC +FRF PL E + ++ I
Sbjct: 118 SAQFALRRIVEKYTKTTRFCFICNYVSKIIPALQSRCTRFRFGPLQTENILPKLHEIAEL 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L LD +A ++ +S GD+R+ + L+ + L IT +++ V+G P +E ++
Sbjct: 178 ENLRLDQDAAESIVKLSGGDMRKVLNVLESCS-LAHKHITLQNVYDVTGRPSPYDIENIY 236
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL----LLSQLFDVVVETEDISDEQQARICKCLAE 345
S + D N +N I + SL ++S++ V++T+ + DE + + +AE
Sbjct: 237 I---SLNNDRLNDALNTINSLKQVKSLSVEDIISEIHKKVMQTK-MLDEMKIFLISRMAE 292
Query: 346 VDKCLVDGADEYLQLLDVAS--NVIRAV 371
++ + G+ E + L + N +R+V
Sbjct: 293 IEYRMAQGSSERVNLASLVGGFNEVRSV 320
>gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 347
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 173/311 (55%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + V L E N PH++ G PG GKTT+ +AH L G
Sbjct: 27 PWVEKYRPVLLDDIVGNSDTVDRLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLG- 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L++ + R+ IC+
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDM 198
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L+ L ++GD+R+AI LQ FG + ++ + P V+ +
Sbjct: 199 ESIKHNDEGLAALIFTAEGDMRQAINNLQSTWSGFG-FVNQDNVFKICDQPHPIVIRQMI 257
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ G D A VN + +GY A ++ +F VV E++ + + + +
Sbjct: 258 KDCQHGKIDEALARVNALWDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWTHMR 317
Query: 350 LVDGADEYLQL 360
+++G +QL
Sbjct: 318 VLEGVGTLVQL 328
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 186/319 (58%), Gaps = 17/319 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++S PWVEKYRP + +VA E V+ + +E PH+LF+GPPGTGKTTT +A+A Q
Sbjct: 14 ENSLPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQ 73
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDE 163
++G Y++ +LELNASD+RGI+VVR +IKTFA+ SG +K++ILDE
Sbjct: 74 IYGKN-YRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----------FKLVILDE 122
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT AQNALRR +E YS TRF + NY ++ L SRC +FRF PL E+ + R+
Sbjct: 123 ADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRL 182
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG--AARLFGSSITSKDLISVSGVIP 281
H+ +E ++L EA +L +S GD+RRA+ LQ A+ G I+ + + G
Sbjct: 183 AHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPR 242
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P + + G ++ A + I ++G + +L+ F V + D+ ++ + +
Sbjct: 243 PADIRTVLQAVLDGSWESALHTFSYIKQSKGLALADMLTA-FAVEFQKLDLQNKTRIALL 301
Query: 341 KCLAEVDKCLVDGADEYLQ 359
L+E++ L G +E +Q
Sbjct: 302 DGLSEIEWRLSSGGNESIQ 320
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 192/328 (58%), Gaps = 13/328 (3%)
Query: 36 EVKRKMAPVLQSSQ--PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
E+K++ P + PWVEKYRP+ + D+ ++++ + + PH+L YGPPGT
Sbjct: 5 ELKQQQQPATAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGT 64
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
GKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ + ++G
Sbjct: 65 GKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG---- 118
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
+K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF P
Sbjct: 119 --FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGP 176
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
L+ E+M R+ H+ EE +++ + + L ++S GD+RRA+ LQ FG +T + +
Sbjct: 177 LTPELMVPRLEHVIKEEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETV 235
Query: 274 ISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDIS 332
+ +G + + + DF A + + + +G +L+++ + V D
Sbjct: 236 YTCTGHPLKSDIANILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEI-HLFVHRVDFP 294
Query: 333 DEQQARICKCLAEVDKCLVDGADEYLQL 360
+ + +A+++ L G E +QL
Sbjct: 295 SSVRIHLLTKMADIEYRLSVGTSEKIQL 322
>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
Length = 327
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 183/316 (57%), Gaps = 11/316 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRPK + ++ E +++ + ++ PH+L YGPPGTGKT+T LA A +
Sbjct: 7 QVNLPWVEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPPGTGKTSTILACARK 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+ P + S VLELNASDDRGI +VR +I +FA+ G +K+IILDEAD
Sbjct: 67 LYTPAQFNSMVLELNASDDRGIGIVRGQILSFAST--------GTMYKSAFKLIILDEAD 118
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PL+ E + R+ H
Sbjct: 119 AMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNH 178
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ E L + + L ++S GD+R+ I+ LQ +G ++ +++ + G P +
Sbjct: 179 VIEAENLKVTEDGKQALITLSGGDMRKVISVLQSTWFAYG-AVNEENVYNCVGHPLPRDI 237
Query: 286 EGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ + +D K++ + + +G +L+++ V++ D D+ + +A
Sbjct: 238 TSIVNWLLNESYDTCYKKIQELKLNKGLALQDILTEVHSYVIKI-DFPDQLFTDLLCKMA 296
Query: 345 EVDKCLVDGADEYLQL 360
E++K L G + +QL
Sbjct: 297 EIEKRLASGCRDNIQL 312
>gi|261187582|ref|XP_002620210.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239594101|gb|EEQ76682.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239608919|gb|EEQ85906.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis ER-3]
gi|327354067|gb|EGE82924.1| replication factor C subunit 4 [Ajellomyces dermatitidis ATCC
18188]
Length = 354
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 187/355 (52%), Gaps = 17/355 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQ-----PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
PE S + KR + L + PWVEKYRP + DV E + L N PH
Sbjct: 4 PESSSAQAKRGLQENLAGAPADYELPWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPH 63
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++ G PG GKTT+ L +A Q+ G + YK VLELNASD+RGI+VVR +IK FA
Sbjct: 64 VIISGMPGIGKTTSILCLARQMLG-DAYKEAVLELNASDERGIDVVRNRIKGFA------ 116
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q++ P +K++ILDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL S
Sbjct: 117 -QKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQS 175
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA R+ L++ + R+ IC E + + L+ L ++GD+R+AI LQ F
Sbjct: 176 RCAILRYARLTDAQVLKRLTQICEAENVKHSEDGLAALIFSAEGDMRQAINNLQSTWAGF 235
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
G ++ ++ V P V+ + C G D+A +N + GY + ++S +F V
Sbjct: 236 G-FVSGDNVFRVVDSPHPVKVQAMIKACWEGRIDVALDTLNELWDLGYSSHDIISTMFRV 294
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM-PEEF 378
+S+ + K + +++G +QL + + R NM PE F
Sbjct: 295 TKTIPTLSEHAKLEFIKEIGFTHMRILEGVQTLVQLSGCVAKLCR--INMKPESF 347
>gi|115398522|ref|XP_001214850.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
gi|114191733|gb|EAU33433.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
Length = 352
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 181/331 (54%), Gaps = 12/331 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 88 DAYKDAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKIIILDEADSMTP 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+ +C+
Sbjct: 141 GAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKRLKQVCDA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVEHTEDGLAALVFSAEGDMRQAINNLQSTWSGFG-FVSGDNVFRVVDSPHPVKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A + +N + GY + ++S +F V +S+ + + +
Sbjct: 260 KACWEGKVDAALETLNELWTLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
++DG LQL S + + NM P+ F+
Sbjct: 320 ILDGVQSLLQLSGCVSKLCK--INMKPQLFE 348
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 191/330 (57%), Gaps = 12/330 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
++S+ PWVEKYRP ++ D+ EE++ + ++ PH+LFYGPPGTGKT+T LA A
Sbjct: 5 VKSNLPWVEKYRPAKLNDLISHEEIIGTINKFIKEEQLPHLLFYGPPGTGKTSTILACAR 64
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
QL+ P+ + S VLELNASDDRGIN+VR +I FA+ +GG YK+IILDEA
Sbjct: 65 QLYKPQSFGSMVLELNASDDRGINIVRGQILDFASTRTIF---KGG-----YKLIILDEA 116
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT DAQNALRR +E Y++ RF ICNY+S+II + SRC +FRF PLS + + R+
Sbjct: 117 DAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQILPRLE 176
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
H+ EG+++ + L +++ GD+R+ + LQ + V + ++
Sbjct: 177 HVVEAEGIDVTDDGKKALMTLAGGDMRKVLNVLQSTWMAYKKVTEVNVYNCVGHPLKEDI 236
Query: 285 VEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+F + F +++ + +G +L+++ +VV +I +++ L
Sbjct: 237 NNIIFWLLNEESFKACYEKIQQLKTQKGLALEDILTEI-HLVVNRLEIPPRVSSQLLINL 295
Query: 344 AEVDKCLVDGADEYLQL--LDVASNVIRAV 371
A +++ L DG E Q+ L A + +R+V
Sbjct: 296 ASIEERLADGCVEKPQITALIAAFSKVRSV 325
>gi|391337930|ref|XP_003743317.1| PREDICTED: replication factor C subunit 2-like [Metaseiulus
occidentalis]
Length = 322
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 161/275 (58%), Gaps = 9/275 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP++ ++ EE V L N P+++ GPPG GKTTT L +A L G
Sbjct: 6 PWVEKYRPEKFTEIVGNEETVARLEVFSRQGNVPNIILCGPPGVGKTTTILCLARLLLGS 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNAS+DRGI+VVR KIK FA Q + P +KIIILDEADSMTE
Sbjct: 66 S-FREAVLELNASNDRGIDVVRNKIKMFA-------QTKVTLPPGRHKIIILDEADSMTE 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +SK TRF CN +IIEP+ SRCA RF LS+ + ++++ IC +
Sbjct: 118 GAQQALRRTMENFSKTTRFALACNTSDKIIEPIQSRCAVIRFGKLSDAQVLAKIIDICRK 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++ + L L +QGD+R+AI LQ FG + K++ V P +++ +
Sbjct: 178 ENVSYAEDGLEALVYTAQGDMRQAIGNLQSTHVGFG-HVNGKNVFKVCDEPHPLIIKEMI 236
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
C GD D A + + + GY A ++S +F V
Sbjct: 237 EYCAKGDIDEAYARMQTLYSLGYAAEDIVSNMFRV 271
>gi|154276822|ref|XP_001539256.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150414329|gb|EDN09694.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 354
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 186/356 (52%), Gaps = 17/356 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQ-----PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
PE S + KR + L + PWVEKYRP + D+ E + L N PH
Sbjct: 4 PESSSAQAKRGLQENLAGAPADYELPWVEKYRPVFLDDIVGNTETIERLKIIARNGNMPH 63
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++ G PG GKTT+ L +A Q+ G YK VLELNASD+RGI+VVR +IK FA
Sbjct: 64 VIISGMPGIGKTTSILCLARQMLGNS-YKEAVLELNASDERGIDVVRNRIKGFA------ 116
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q++ P +K++ILDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL S
Sbjct: 117 -QKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQS 175
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA R+ L++ + R+ IC E + + L L ++GD+R+AI LQ F
Sbjct: 176 RCAILRYARLTDGQILKRLTQICEAEKVKYSEDGLEALIFSAEGDMRQAINNLQSTWAGF 235
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
G ++ +++ V P V+ + C G D A +N + GY + ++S +F V
Sbjct: 236 G-FVSGENVFRVVDSPHPVKVQAMIKACWEGKIDAALDSLNELWDLGYSSHDIISTMFRV 294
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
+S+ + K + +++G +QL + + R NM PE FQ
Sbjct: 295 TKTMPTLSEHTRLEFIKEIGFTHMRILEGVQTLVQLSGCLAKLCR--INMKPESFQ 348
>gi|290559904|gb|EFD93226.1| replication factor C small subunit [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 313
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 180/311 (57%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ +V Q+++V L HM+ GPPG GKTT A+ +A ++FG
Sbjct: 4 WVEKYRPQSFDEVIGQKDIVEKLKAMSSKKEIQHMILSGPPGVGKTTCAVVLAKEVFGST 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ +ELNASDDR ++V++ K+K FA R P+KII+ DEADS+T++
Sbjct: 64 -WNQNFIELNASDDRKLSVIQGKVKEFA---------RTKPIDSPFKIILFDEADSLTQE 113
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS RF F NY S IIEPL SRCA RF+PLS+ ++ + I +E
Sbjct: 114 AQQALRRMMEEYSSTCRFLFSVNYQSNIIEPLQSRCAILRFQPLSKTDVTKFIDRIAEKE 173
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP-PEVVEGLF 289
L +D+EA L +S+GDLR + +Q A + + I +K ++ SG++ + +EGL
Sbjct: 174 KLEIDSEAKDALEYVSRGDLRNLVNLMQSLANV-SNKIDAKAVLQSSGLMDISKTIEGLK 232
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
A +GDF + + II G LL +F+VV TE +D+ + I + LAE D
Sbjct: 233 AAL-AGDFKKSRAIFSEIIDSGINMKELLISIFNVVSTTEIANDKIKNYIFEKLAETDYR 291
Query: 350 LVDGADEYLQL 360
+V+GA ++Q
Sbjct: 292 IVEGATPFIQF 302
>gi|241725881|ref|XP_002412213.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
gi|215505426|gb|EEC14920.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
Length = 336
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 164/275 (59%), Gaps = 9/275 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ EE + L N P+++ GPPG GKTTT L ++ L GP
Sbjct: 20 PWVEKYRPAKFNEIVGNEETIARLEVFSREGNVPNVILSGPPGVGKTTTILCLSRILLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNAS+DRGI+VVR KIK FA Q++ P +K+IILDEADSMTE
Sbjct: 80 S-FRDAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVIILDEADSMTE 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA RF LS+ + +++L IC +
Sbjct: 132 GAQQALRRTMEIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLSDAQVLAKLLDICKQ 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++ + L L +QGD+R+AI LQ F S + S+++ V P +++ +
Sbjct: 192 EDVSYAEDGLEALVFTAQGDMRQAINNLQSTFVGF-SHVNSENVFKVCDEPHPLLIKDML 250
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
C G+ D A K + ++ GY A ++S +F V
Sbjct: 251 QHCVEGELDKAYKIMLHLWKLGYAAEDIISNVFRV 285
>gi|339898595|ref|XP_003392626.1| putative replication factor C, subunit 4 [Leishmania infantum
JPCM5]
gi|321398414|emb|CBZ08802.1| putative replication factor C, subunit 4 [Leishmania infantum
JPCM5]
Length = 360
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/354 (36%), Positives = 191/354 (53%), Gaps = 29/354 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-- 107
PWVEKYRP+ V D+ E + L + N P++L GPPGTGKTT+ L +A L
Sbjct: 7 PWVEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLLLQ 66
Query: 108 --------------GPELYKSRVLELNASDDRGINVVRTKIKTFAAV---------AVGS 144
++ K VLELNASDDRG++VVR KIK FA + G
Sbjct: 67 STDTGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPRKFFSTGE 126
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
G + + +KI++LDEADSMT AQ ALRRTME +S TRF F CN SRIIEP+ S
Sbjct: 127 GVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQS 186
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA RFK LS+ + R++++ +E ++ + L L +++GDLR+A+ LQ +
Sbjct: 187 RCAVVRFKKLSDADILKRLVYVIQQENVSYTDDGLEALLYLAEGDLRQALNALQATHTGY 246
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSG-DFDLANKEVNNIIAEGYPASLLLSQLFD 323
G + + ++ V P +VE + C + + + A++E+N ++ GY +++ F
Sbjct: 247 G-LVNADNVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNRLLNRGYAPVDVIATFFK 305
Query: 324 VVVETEDI--SDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMP 375
VV + S+ QQ + K + E + +G LQL + + +I AV N P
Sbjct: 306 VVQTNARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARMIAAVENTP 359
>gi|443732297|gb|ELU17070.1| hypothetical protein CAPTEDRAFT_192756 [Capitella teleta]
Length = 340
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 182/319 (57%), Gaps = 10/319 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP + + VEK+RP ++DV EE + L E N P+++ GPPGTGKTT+ L
Sbjct: 11 APSVTPAMTMVEKFRPILLRDVVGNEETISRLQVFAEQGNVPNLIIAGPPGTGKTTSILC 70
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
++ L G YK VLELNAS+DRGI+VVR KIK FA Q++ P +K+IIL
Sbjct: 71 LSRALLGAS-YKDAVLELNASNDRGIDVVRNKIKMFA-------QKKVSLPAGRHKVIIL 122
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+ AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ LS+ +
Sbjct: 123 DEADSMTDGAQQALRRTMEIYSKTTRFALACNSSDKIIEPIQSRCAVLRYSKLSDAQLLE 182
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP 281
R+ +C +E ++ + + + SQGD+R+A+ LQ + FG + S+++ V
Sbjct: 183 RLQEVCMKESVSYTEDGMEAVIFTSQGDMRQALNNLQSTCQGFG-HVNSENVFKVCDEPH 241
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
P +V+ + C + D D A K ++++ + GY ++ +F V +T D+ + + K
Sbjct: 242 PMLVKDMLQHCINSDIDAAYKIMSHLWSLGYAPQDIVGIIFR-VAKTHDMPEFLKLEFIK 300
Query: 342 CLAEVDKCLVDGADEYLQL 360
+ + +G D LQ+
Sbjct: 301 EIGFTHMKIAEGVDSLLQM 319
>gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM
1728]
gi|73920752|sp|Q9HI47.2|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 186/312 (59%), Gaps = 15/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ ++E ++ L + +E PH+LF G GTGKT+TA+A+A +LFG +
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFG-D 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP--YKIIILDEADSMT 168
+K ++E+NAS++ GI+V+R KIK A + P P +KI+ LDEAD +T
Sbjct: 64 SWKENMVEMNASNENGIDVIRNKIKDIARIK----------PSNPLGFKILFLDEADQLT 113
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+AQ ALRRTME YS+ TRF F CNY S+II P+ SR RF+P+ +E +S ++ I
Sbjct: 114 AEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAK 173
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EG +D E++ L +S GD+R+AI LQ A I+ K + + G PE ++ +
Sbjct: 174 NEGFQIDEESMHALVEVSAGDMRKAINVLQ--AVYTSGEISPKKIYEIIGYASPEKIQKM 231
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +G FD A + V+ ++ + + + + V + IS +Q+ I K LA+ +
Sbjct: 232 ISRAINGLFDEAREIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEF 291
Query: 349 CLVDGADEYLQL 360
+V+G+++ +QL
Sbjct: 292 RIVEGSNDRIQL 303
>gi|327297458|ref|XP_003233423.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326464729|gb|EGD90182.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 352
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 182/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DTYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 141 GAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDSPHPVKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D+A +N + GY A ++S +F V ++S+ + K +
Sbjct: 260 KACWEGKVDIALDTLNELWELGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G +QL S I +C NM PE F+
Sbjct: 320 ILEGLQTLVQL----SGCIAKLCKINMKPELFK 348
>gi|405121785|gb|AFR96553.1| activator 1 40 kDa subunit [Cryptococcus neoformans var. grubii
H99]
Length = 347
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 173/311 (55%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + + L E N PH++ G PG GKTT+ +AH L G
Sbjct: 27 PWVEKYRPVLLDDIVGNSDTIDRLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLG- 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L++ + R+ IC+
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDM 198
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L+ L ++GD+R+AI LQ FG + ++ + P V+ +
Sbjct: 199 ESIKYNDEGLAALIFTAEGDMRQAINNLQSTWSGFG-FVNQDNVFKICDQPHPIVIRQMI 257
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ G D A +N + +GY A ++ +F VV E++ + + + +
Sbjct: 258 KDCQHGKIDEALARINALWDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWTHMR 317
Query: 350 LVDGADEYLQL 360
+++G +QL
Sbjct: 318 VLEGVGTLVQL 328
>gi|363750179|ref|XP_003645307.1| hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888940|gb|AET38490.1| Hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
Length = 319
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/320 (39%), Positives = 176/320 (55%), Gaps = 12/320 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ +KD+ EE+V L N PHM+ G PG GKTT+ IAH+L G
Sbjct: 10 PWVEKYRPQLLKDIVGNEEIVERLQQIAYDGNMPHMIISGLPGIGKTTSIHCIAHELLGD 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 S-YSQAVLELNASDDRGIDVVRNQIKQFA-------QKKCTLPPGKHKIIILDEADSMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+L I
Sbjct: 122 GAQQALRRTMEIYSSSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKL 181
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L + ++GD+R+AI LQ FG + ++ + P VV+ +
Sbjct: 182 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGFG-LVNGDNVFKIVDSPHPLVVKKML 240
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ D + + ++ +GY A +++ F V+ +I + + I K +
Sbjct: 241 L---ANSLDESLTYLKDLWNKGYSAVDIITTCFRVMKNLAEIKEHIRLEIIKEIGFTHMR 297
Query: 350 LVDGADEYLQLLDVASNVIR 369
+++G YLQL + V R
Sbjct: 298 ILEGVGTYLQLSATLAKVHR 317
>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
Length = 332
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 140/217 (64%), Gaps = 8/217 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS++ M R+ I
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
E + + + L ++++GD+R+ + LQ F +
Sbjct: 184 EAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDT 220
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLIKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|424513766|emb|CCO66388.1| replication factor C subunit 2 [Bathycoccus prasinos]
Length = 373
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 165/284 (58%), Gaps = 9/284 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++QPW+EK+RP ++ D+ EE + + +ET + P++L GPPG GKTT+ +A L
Sbjct: 22 ANQPWIEKWRPTKLDDIVGHEETLNQMRGMIETGSMPNLLLSGPPGCGKTTSVHVLARTL 81
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + YK VLELNASD+RGI+VVR KIK FA Q++ P KIIILDEAD+
Sbjct: 82 LG-DRYKDAVLELNASDERGIDVVRNKIKMFA-------QKKVTLPAGRCKIIILDEADA 133
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+ AQ A+RRTME YS TRF CN +IIEP+ SRCA RF LS++ + R++++
Sbjct: 134 MTKGAQQAMRRTMEIYSATTRFALACNLSDKIIEPIQSRCAIVRFSRLSDKQVLERLVYV 193
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
C +E + DA L + ++GD+R A+ LQ F + +++ V PEV+
Sbjct: 194 CEQEKVPHDARGLEAIVFCAEGDMRNALNSLQACHSGF-QMVNQENVFRVCDTPHPEVIG 252
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETED 330
+ C +G+ D A + + GY L+ +F V +D
Sbjct: 253 AILQHCLNGELDDACDRLLKLRKSGYSPQDLIKTIFQVCKRFDD 296
>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
Length = 332
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 140/217 (64%), Gaps = 8/217 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS++ M R+ I
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
E + + + L ++++GD+R+ + LQ F +
Sbjct: 184 EAVQITDDGKRALLTLAKGDMRKVLNVLQSTVMAFDT 220
>gi|71756209|ref|XP_829019.1| replication factor C subunit 4 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834405|gb|EAN79907.1| replication factor C, subunit 4, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261334959|emb|CBH17953.1| replication factor C, subunit 4, putative [Trypanosoma brucei
gambiense DAL972]
Length = 341
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 181/337 (53%), Gaps = 13/337 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP ++D+ + V L N P++L GPPGTGKTT+ L +A
Sbjct: 3 QQTVPWVEKYRPMSMEDIVGNADAVARLQVIAREGNLPNLLLCGPPGTGKTTSMLCLARS 62
Query: 106 LFG-PE-------LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG---GYPCP 154
L P+ K VLELNASDDRG++VVR KIK FA QR G
Sbjct: 63 LLSDPDGGGSNNNALKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPQRVGDSNNRKIN 122
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
+KI+ILDEADSMT AQ ALRRT+E +S TRF F CN +IIEP+ SRCA RF+ L
Sbjct: 123 LHKIVILDEADSMTPAAQQALRRTIELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFRKL 182
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
S + R+++I +E + + L L ++ GDLR A+ LQ + S + + ++
Sbjct: 183 SHTDILRRLMYIIQQENVAYTDDGLEALLYLADGDLRSAVNALQATCSGY-SLVNADNVF 241
Query: 275 SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDE 334
V + P++VE + C D A+KE+ ++ GY S ++S F + DE
Sbjct: 242 KVCDLPHPQLVEAILTSCVKQDLAAAHKEMQRLLGRGYATSDVISTFFRAAQNVKLFRDE 301
Query: 335 -QQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
QQ ++ + + EV + +G LQL + +I A
Sbjct: 302 KQQLQVLRIIGEVTMRVAEGVGTPLQLASMVCRIIVA 338
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 185/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 19 PWVEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 79 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 130
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 131 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 190
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 191 ENVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANIL 249
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 250 DWMLNQDFTTAYRHIMELKTLKGLALHDILTEV-HLFVHRVDFPSSVRIHLLTKMADIEY 308
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 309 RLSVGTSEKIQL 320
>gi|393240465|gb|EJD47991.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 348
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 181/314 (57%), Gaps = 16/314 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV + + + N +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 31 PWVEKYRPVALSDVVSHDGITTTIENFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGN 90
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK ++LELNASDDRGI+VVR +IK FA + RR +K+IILDEAD MT+
Sbjct: 91 D-YKRQILELNASDDRGIDVVREQIKQFAETR--TLFRRS------FKLIILDEADMMTQ 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E Y+K RF ICNY+++I + SRC +FRF PL + + RV H+
Sbjct: 142 AAQSALRRIIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIQDVERRVRHVIEA 201
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + ++ + L L +S+GD+RRA+ LQ + + T ++ + +G P ++ +
Sbjct: 202 EDVKIEPDGLDALLKLSKGDMRRALNILQACHAAYDRT-TETEIYNCTGSPHPADIQAIV 260
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARI--CKCLAEV 346
+ +F A ++ I E G L++ +D V E I QAR+ LA+
Sbjct: 261 QSMMTEEFTTAYHNISRIRVERGLALQDLITGAYDYV---ESIELPPQARVYLLDHLADT 317
Query: 347 DKCLVDGADEYLQL 360
+ L G E LQ
Sbjct: 318 EHRLSTGGSEKLQF 331
>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
E1-9c]
gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
Length = 326
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 190/327 (58%), Gaps = 12/327 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+E+YRP ++ D+ Q+E+ L + ++ + PH+LF G G GKTT A+A+A + FG E
Sbjct: 9 WIERYRPTRLADIVGQDEITERLISYVKGRSLPHLLFTGSAGIGKTTAAVALAREFFG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ E+NASD+RGI+VVR +IK FA + G +KI+ LDEAD++T D
Sbjct: 68 AWHINFREMNASDERGIDVVRNQIKQFARTSPLEG--------AEFKILFLDEADALTTD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTMETYS+ RF CNY S+II+P+ SRCA +RF+PL+ E +S + I +E
Sbjct: 120 AQAALRRTMETYSRGCRFILSCNYSSKIIDPIQSRCAIYRFRPLTPEAISEEIGKIAGKE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ + +A+ + I+QGD+R+AI LQGA+ + SI + + +++ P+ +E L
Sbjct: 180 GITVTPDAIEAIVYIAQGDMRKAINALQGAS-IVSKSIDQEMVYAITSSARPDEIEELLG 238
Query: 291 VCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ GDF+ A + ++ G + LL Q++ + + E + + L E D
Sbjct: 239 LILVGDFEGAEAVLLALMHTRGIAPAELLGQVYR-ALSGRSMERELKVALIGHLGETDFR 297
Query: 350 LVDGADEYLQLLDVASNVIRAVCNMPE 376
L +GA LQ+ + + + +V E
Sbjct: 298 LSEGASPDLQMEALLARCVESVIAQQE 324
>gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma
acidophilum]
Length = 330
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 186/312 (59%), Gaps = 15/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ ++E ++ L + +E PH+LF G GTGKT+TA+A+A +LFG +
Sbjct: 17 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFG-D 75
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP--YKIIILDEADSMT 168
+K ++E+NAS++ GI+V+R KIK A + P P +KI+ LDEAD +T
Sbjct: 76 SWKENMVEMNASNENGIDVIRNKIKDIARIK----------PSNPLGFKILFLDEADQLT 125
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+AQ ALRRTME YS+ TRF F CNY S+II P+ SR RF+P+ +E +S ++ I
Sbjct: 126 AEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAK 185
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EG +D E++ L +S GD+R+AI LQ A I+ K + + G PE ++ +
Sbjct: 186 NEGFQIDEESMHALVEVSAGDMRKAINVLQ--AVYTSGEISPKKIYEIIGYASPEKIQKM 243
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +G FD A + V+ ++ + + + + V + IS +Q+ I K LA+ +
Sbjct: 244 ISRAINGLFDEAREIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEF 303
Query: 349 CLVDGADEYLQL 360
+V+G+++ +QL
Sbjct: 304 RIVEGSNDRIQL 315
>gi|145250105|ref|XP_001396566.1| replication factor C subunit 4 [Aspergillus niger CBS 513.88]
gi|134082079|emb|CAK42196.1| unnamed protein product [Aspergillus niger]
Length = 352
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 182/331 (54%), Gaps = 12/331 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E V L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPVYLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ L++ + R+ +C+
Sbjct: 141 GAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQIVKRLKQVCDA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVEHNEEGIAALVFSAEGDMRQAINNLQSTWSGFG-FVSGDNVFRVVDSPHPIKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A + +N + GY + ++S +F V +S+ + + +
Sbjct: 260 KACWEGKVDAALETLNELWELGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
++DG LQL + + R NM P+ F+
Sbjct: 320 ILDGVQSLLQLSGCVAKLCR--INMKPQLFE 348
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 179/315 (56%), Gaps = 8/315 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP + ++ +E++ L + PH+LFYGPPGTGKT+T LA A L+
Sbjct: 14 NMPWVEKYRPASLTELVSHQEIIDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLY 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADS 166
P+ S VLELNASDDRGI +VR +I FA + + + + P K++ILDEAD+
Sbjct: 74 TPKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVP----KLVILDEADA 129
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRR +E ++ RF ICNY+S+II + SRC + RF PLS E + R+ HI
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHI 189
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
E L + + L ++++GD+RR I LQ A F ++ +++ G P VE
Sbjct: 190 VRVESLTVTEDGQKALLNLAEGDMRRVINILQSTAMAF-KTVDERNVYRCLGYPLPTDVE 248
Query: 287 GLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ + + + A + I E + S +L+ + D + + E +R+ C+A+
Sbjct: 249 KIVKILLNDSMEDAYTRIEEIRNERAFALSDILNSMHDFIFRLV-VPPELLSRLLICMAD 307
Query: 346 VDKCLVDGADEYLQL 360
++ L G + LQL
Sbjct: 308 IEYHLSQGCSDRLQL 322
>gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1]
gi|73920753|sp|Q977Z9.2|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 183/312 (58%), Gaps = 15/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ ++E ++ L + +E PH+LF G GTGKT+TA+A+A +LFG E
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG-E 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP--YKIIILDEADSMT 168
+K +E+NAS++ GI+V+R KIK A + P P +KI+ LDEAD +T
Sbjct: 64 SWKENFIEMNASNENGIDVIRNKIKDIARI----------RPSNPLGFKILFLDEADQLT 113
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+AQ ALRRTME YS+ TRF F CNY S+II P+ SR RF+P+ +E + ++ I
Sbjct: 114 AEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAK 173
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EG +D E++ + +S GD+R+AI LQ A I+ K + + G PE V L
Sbjct: 174 NEGFTIDDESMEAMVEVSGGDMRKAINVLQ--AVYTSGEISPKKIYEIIGYASPESVNKL 231
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +G FD A + V+ ++ E + + + + +V + +Q+ I K LA+ +
Sbjct: 232 ISRAINGLFDEARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEF 291
Query: 349 CLVDGADEYLQL 360
+V+G+++ +QL
Sbjct: 292 RIVEGSNDRIQL 303
>gi|367037019|ref|XP_003648890.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
gi|346996151|gb|AEO62554.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
Length = 358
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 178/333 (53%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 35 PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLG- 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 94 DSYKEAVLELNASDERGIEVVRQRIKGFA-------QKKVTLPAGRHKIVILDEADSMTS 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA RF L++ + R+L I
Sbjct: 147 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEA 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 207 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTHAGFG-FVSGDNVFKVVDSPHPIKVQAML 265
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 266 KACYEGNIDAALDSLRELWNLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMK 325
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G LQL S + +C + P++F+
Sbjct: 326 ILEGVQTLLQL----SGCVARLCKLNMDPKKFE 354
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 141/214 (65%), Gaps = 10/214 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP + D+ EE++ + ++ PH+LFYGPPGTGKT+T LA A Q
Sbjct: 6 KSNLPWVEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPPGTGKTSTILACARQ 65
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEA 164
L+ P+ + VLELNASDDRGIN+VR +I FA+ + SG YK+IILDEA
Sbjct: 66 LYKPQSFNQMVLELNASDDRGINIVRNQILNFASTRTIFSGG---------YKLIILDEA 116
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS + + R+
Sbjct: 117 DAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDQILPRLE 176
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
H+ + EG+ + + L +++ GD+R+ + LQ
Sbjct: 177 HVIDAEGIKVSDDGKKALMTLAGGDMRKVLNVLQ 210
>gi|326472467|gb|EGD96476.1| DNA replication factor C subunit [Trichophyton tonsurans CBS
112818]
Length = 352
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 182/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DTYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 141 GAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDSPHPVKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D+A +N + GY A ++S +F V ++S+ + K +
Sbjct: 260 KACWEGKVDIALDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G +QL S I +C NM PE F+
Sbjct: 320 ILEGLQTLVQL----SGCIAKLCKINMQPELFK 348
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 180/318 (56%), Gaps = 18/318 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + + +E++ + ++ PH+LFYGPPGTGKT+T A A QL+G
Sbjct: 11 PWVEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTSTIKACAKQLYG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
+ YKS VLELNASDDRGI VVR +IKTFA+ +G +K+IILDEAD+M
Sbjct: 70 KAYKSMVLELNASDDRGIGVVREQIKTFASTKTVFSAG----------FKLIILDEADAM 119
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E Y+K TRF ICNY+S+I L SRC +FRF PL+ E M +V +
Sbjct: 120 TNDAQAALRRVIEKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHMIQQVQRVI 179
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+ E + + L ++ GD+R+A+ LQ F + + + + +G P +E
Sbjct: 180 DAEHIETTPAGIEALVKLASGDMRKALNILQSTFMAF-NKVNDEGVYLCTGTPLPADIEA 238
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV--VVETEDISDEQQARICKCLAE 345
+ V + F A +++ I E A L L DV + DI + + LA+
Sbjct: 239 IVEVMLNESFKTAFRKIMEIKTEQGLA--LQDILHDVHEFIHRLDIPTASRLLLLDRLAQ 296
Query: 346 VDKCLVDGADEYLQLLDV 363
+++ L GA+E QL D+
Sbjct: 297 IEERLAYGANERAQLADL 314
>gi|428174860|gb|EKX43753.1| hypothetical protein GUITHDRAFT_140204 [Guillardia theta CCMP2712]
Length = 331
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 177/314 (56%), Gaps = 10/314 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PWVEKYRP+ +K+V E+ V L + N PH+L G PG GKTT LA+A +L
Sbjct: 10 ASLPWVEKYRPQTLKEVVGNEDAVARLQAIAKDGNMPHLLLTGSPGIGKTTCVLALAREL 69
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + +K VLELNASD+RGI+VVR KIK FA Q++ P +KIIILDEADS
Sbjct: 70 LG-DSFKEGVLELNASDERGIDVVRNKIKMFA-------QQKVTLPPGRHKIIILDEADS 121
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT +Q A+RRTME YS TRF CN S IIEP+ SRCA RF LS++ + SR+ I
Sbjct: 122 MTSASQQAMRRTMELYSNTTRFALACNNSSEIIEPIQSRCAILRFAKLSDKELLSRLQDI 181
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
C +E + + L L + GD+R+A+ LQ A FG + + + V P+
Sbjct: 182 CEKEEVLASTDGLEALIFTADGDMRQAVNSLQSTANGFG-IVNQESVFKVCDQPHPKTAI 240
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ C +GD A+ ++ ++ GY A ++ +F V D+ ++ + K +
Sbjct: 241 QIVKSCLTGDIKNAHSKLEDLWQRGYSAQDIVQTIFK-VTRNMDMPEKSKLDFLKEIGIY 299
Query: 347 DKCLVDGADEYLQL 360
+++G D +Q+
Sbjct: 300 HMRVLEGVDSLVQV 313
>gi|326481689|gb|EGE05699.1| replication factor C subunit 4 [Trichophyton equinum CBS 127.97]
Length = 352
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 182/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DTYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 141 GAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDSPHPVKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D+A +N + GY A ++S +F V ++S+ + K +
Sbjct: 260 KACWEGKVDIALDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G +QL S I +C NM PE F+
Sbjct: 320 ILEGLQTLVQL----SGCIAKLCKINMQPELFK 348
>gi|296810064|ref|XP_002845370.1| replication factor C subunit 4 [Arthroderma otae CBS 113480]
gi|238842758|gb|EEQ32420.1| replication factor C subunit 4 [Arthroderma otae CBS 113480]
Length = 352
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 182/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DTYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 141 GAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDSPHPVKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D+A +N + GY A ++S +F V ++S+ + K +
Sbjct: 260 KACWEGKVDIALDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G +QL S I +C NM PE F+
Sbjct: 320 ILEGLQTIVQL----SGCIAKLCKINMKPELFK 348
>gi|340522843|gb|EGR53076.1| replication factor C subunit 4 [Trichoderma reesei QM6a]
Length = 357
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 180/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R+L I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLLQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGNVDSALDTLRELWDLGYSSHDIISTMFKVTKTMPTLSEHSKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G LQL S + +C + P+ F+
Sbjct: 325 ILEGVQTLLQL----SGCVARLCKLNMDPKRFK 353
>gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1]
Length = 330
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 183/312 (58%), Gaps = 15/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ ++E ++ L + +E PH+LF G GTGKT+TA+A+A +LFG E
Sbjct: 17 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG-E 75
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP--YKIIILDEADSMT 168
+K +E+NAS++ GI+V+R KIK A + P P +KI+ LDEAD +T
Sbjct: 76 SWKENFIEMNASNENGIDVIRNKIKDIARIR----------PSNPLGFKILFLDEADQLT 125
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+AQ ALRRTME YS+ TRF F CNY S+II P+ SR RF+P+ +E + ++ I
Sbjct: 126 AEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAK 185
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EG +D E++ + +S GD+R+AI LQ A I+ K + + G PE V L
Sbjct: 186 NEGFTIDDESMEAMVEVSGGDMRKAINVLQ--AVYTSGEISPKKIYEIIGYASPESVNKL 243
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +G FD A + V+ ++ E + + + + +V + +Q+ I K LA+ +
Sbjct: 244 ISRAINGLFDEARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEF 303
Query: 349 CLVDGADEYLQL 360
+V+G+++ +QL
Sbjct: 304 RIVEGSNDRIQL 315
>gi|225718574|gb|ACO15133.1| Replication factor C subunit 2 [Caligus clemensi]
Length = 325
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 188/325 (57%), Gaps = 14/325 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRPK D+ E V L E N P+++ GPPG GKTTT L +A L G
Sbjct: 11 PWIEKYRPKTFDDIVGNSETVSRLKVFSEDGNPPNIIIAGPPGVGKTTTILCLARALLGG 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS++RGI+VVR KIK FA Q++ P +KII+LDEADSMTE
Sbjct: 71 S-FKDAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPQSRHKIIVLDEADSMTE 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IEP+ SRCA R+ S+ + ++V+ +C++
Sbjct: 123 AAQQALRRTMEIYSDTTRFCLACNSSEKVIEPIQSRCAMLRYSRPSDAEVLAQVIKVCDK 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG++ +E L + +QGD+R+A+ LQ FG I S+++ V P +V+ +
Sbjct: 183 EGVSYTSEGLEAIVFTAQGDMRQALNNLQSTHDGFGKVI-SENVFRVCDEPHPLLVKDML 241
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ C G + A K ++++ GY +++ +F V +T +++ + K + +
Sbjct: 242 SHCAEGKMEEAYKVLSHLWKMGYSPEDIITNVFR-VCKTHPMAEYLKLEFIKEIGQTHMR 300
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM 374
+V G++ LQL S ++ +C++
Sbjct: 301 VVHGSNSLLQL----SGLLAKLCHV 321
>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559322|sp|O26343.1|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=MthRFC small subunit
gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 182/317 (57%), Gaps = 19/317 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ QE ++ L +E + P+++F GP G GKTT ALA+A ++ G
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILG- 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD RGI+ VRT IK F + VG+ P++II LDE D+MT
Sbjct: 66 EYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGA----------PFRIIFLDEVDNMT 115
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRR ME Y+K + F CNY S+II+P+ SRCA FRF PL + R+ +I
Sbjct: 116 KDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAE 175
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
+E L +A AL T+ ++GDLR+AI LQ AA L G IT + V P+ V +
Sbjct: 176 KENLEYEAHALETIVYFAEGDLRKAINLLQSAASL-GEKITESSIYDVVSRARPKDVRKM 234
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFD----VVVETEDISDEQQARICKCL 343
G F A + I + +G +++Q++ + +E E + ++ + +
Sbjct: 235 IKTILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGE-VDGDRYVGLIDAI 293
Query: 344 AEVDKCLVDGADEYLQL 360
E D + +GA+ +QL
Sbjct: 294 GEYDFRIREGANPRIQL 310
>gi|392590080|gb|EIW79410.1| DNA replication factor [Coniophora puteana RWD-64-598 SS2]
Length = 345
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 179/314 (57%), Gaps = 12/314 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++
Sbjct: 28 SLPWVEKYRPVTLDDVKSHKDITTTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY 87
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E Y+ ++LELNASDDRGI+VVR +IK FA + YK+IILDEAD M
Sbjct: 88 GSE-YRKQILELNASDDRGIDVVREQIKQFAETRTLFAK--------SYKLIILDEADMM 138
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+ AQ ALRR +E Y+K RF ICNY+++I + SRC +FRF PL + ++ H+
Sbjct: 139 TQQAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPMAEVEKQIDHVV 198
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
E + + L +S+GD+RRA+ LQ + SI ++ + +G P +E
Sbjct: 199 EAEDCKVTKDGKEALLKLSKGDMRRALNVLQACHAAY-DSIGETEVYNCTGNPHPRDIES 257
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ S +F + + +N + E G LLS F+ V+T ++ + + + LA +
Sbjct: 258 IVNSMLSDEFTTSYQMINQMKTERGLALQDLLSGAFE-YVDTLELKPQARVYLLDYLATI 316
Query: 347 DKCLVDGADEYLQL 360
+ L GA E +QL
Sbjct: 317 EYRLSTGASEKIQL 330
>gi|358401379|gb|EHK50685.1| hypothetical protein TRIATDRAFT_157714 [Trichoderma atroviride IMI
206040]
Length = 357
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 180/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R++ I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLMQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + + +
Sbjct: 265 KACYEGNVDSALDTLRELWDLGYSSHDIISTMFKVTKTMPTLSEHSKLEFIREIGFTHMK 324
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G LQL S + +C + P+ F+
Sbjct: 325 ILEGVQTLLQL----SGCVARLCKLNMDPKRFK 353
>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
Length = 353
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 124/297 (41%), Positives = 170/297 (57%), Gaps = 13/297 (4%)
Query: 32 KSEDEVKRKMAPVLQSSQ----PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
++E + K+ AP SS PWVEKYRP ++ ++ EE V L N P+++
Sbjct: 14 QTEVQPKKDEAPAKLSSSGYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIII 73
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
GPPGTGKTT+ L +A L GP + K VLELNAS+DRGI+VVR KIK FA Q+
Sbjct: 74 AGPPGTGKTTSILCLARALLGPAM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQ 125
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
+ P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN +IIEP+ SRCA
Sbjct: 126 KVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCA 185
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
R+ L +E + R+L + E L + L + +QGD+R+A+ LQ FG
Sbjct: 186 VLRYTKLRDEQIMMRLLEVVERENLVTSNDGLEAIIFTAQGDMRQALNNLQSTNSGFG-Y 244
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
I S+++ V P +V+ + C + + D A K + + A GY ++ +F V
Sbjct: 245 INSENVFKVCDEPHPLLVKSMLEHCVNANIDEAYKIIEQLWALGYSPEDIIGNIFRV 301
>gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba]
gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba]
Length = 332
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 139/217 (64%), Gaps = 8/217 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS+ M R+ I
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQNQMMPRLEKIIEA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
E + + + L ++++GD+R+ + LQ F +
Sbjct: 184 EAVQITDDGKRALLTLAKGDMRKVLNVLQSTVMAFDT 220
>gi|322795578|gb|EFZ18260.1| hypothetical protein SINV_11151 [Solenopsis invicta]
Length = 354
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 177/311 (56%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ D+ E+ V L + N P+++ GPPG GKTTT L +A L GP
Sbjct: 40 PWIEKYRPQVFSDIVGNEDTVSRLAVFAQHGNTPNIIIAGPPGVGKTTTILCLARTLLGP 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS++RGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 100 A-FKEAVLELNASNERGIDVVRNKIKMFA-------QKKVNLPKGKHKIIILDEADSMTD 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN IIEP+ SRCA R+ L++ + ++VL +C +
Sbjct: 152 GAQQALRRTMEIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLTDAQVLAKVLEVCEK 211
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++ + + + +QGD+R+A+ LQ F + + ++++ V P +V+ +
Sbjct: 212 ENISYTDDGMEAIVFTAQGDMRQALNNLQSTRNGF-NHVNAENVFKVCDEPHPLIVKDML 270
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD A +++ GY A ++S +F V + + ++ + + K +
Sbjct: 271 DNCVQGDVSKACTVMDHFWKMGYSAEDIISNVFK-VCKNHAMDEKLKIKFIKEIGITHMG 329
Query: 350 LVDGADEYLQL 360
+V+G + LQL
Sbjct: 330 IVEGINSLLQL 340
>gi|367013632|ref|XP_003681316.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
gi|359748976|emb|CCE92105.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
Length = 322
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 185/328 (56%), Gaps = 13/328 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P L PWVEKYRP+++KD+ EE V L + N PHM+ G PG GKTT+ +
Sbjct: 5 PQLTLQLPWVEKYRPEKLKDIVGNEETVERLEQIAKDGNMPHMIISGLPGIGKTTSVHCL 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILD
Sbjct: 65 AHELLGKS-YSQAVLELNASDDRGIDVVRNQIKHFA-------QKKCHLPPGKHKIIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R
Sbjct: 117 EADSMTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKR 176
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD-LISVSGVIP 281
++ I E ++ + L + ++GD+R+AI LQ + G + S D + +
Sbjct: 177 LMEIIKAENVSFTNDGLEAIIFTAEGDMRQAINNLQST--VAGHGLVSGDNVFKIVDSPH 234
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
P +V+ + + + + +++ + N++ +GY A +++ F V + + Q+ + K
Sbjct: 235 PLIVKKML-LADTLEESISHLK-NDLWDKGYSAVDIVTTSFRVTKSLYQVKEAQRLEMIK 292
Query: 342 CLAEVDKCLVDGADEYLQLLDVASNVIR 369
+ +++G YLQL + + + R
Sbjct: 293 EIGITHMRILEGVGTYLQLASLLARIHR 320
>gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 168/283 (59%), Gaps = 11/283 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP + D+ +E++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 11 KPWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLFYGPPGTGKTSTILACARQLYP 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P L+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 71 PALFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMT 122
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS + M R+ I
Sbjct: 123 NDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQ 182
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E + + L ++S+GD+R+ + LQ A F + ++ +G + +E +
Sbjct: 183 SEDIKITENGKKALLTLSKGDMRKVLNVLQSTAMAF-DVVNEDNVYMCAGYPLRQDIENI 241
Query: 289 FAVCRSG-DFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETE 329
SG +F+++ + V+ A G ++++L +V+ E
Sbjct: 242 LKALLSGHNFEVSFQNVDVAKSARGLALEDIITELHLIVMRLE 284
>gi|344301880|gb|EGW32185.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 323
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 182/315 (57%), Gaps = 7/315 (2%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + PW+EKYRP+ + D+ Q+E++ + ++T PH+LFYGPPGTGKT+T +A+A
Sbjct: 1 MSDTLPWIEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLLFYGPPGTGKTSTIIAVAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+++G YK+ VLELNASDDRGI+VVR +IK FA+ R+ +K+IILDEA
Sbjct: 61 EIYGKN-YKNMVLELNASDDRGIDVVRNQIKNFAST------RQIFNQGNSFKLIILDEA 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT AQN+LRR +E ++K RF + NY ++ L SRC +FRF P+ E + R+
Sbjct: 114 DAMTNAAQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDTEAIRERIK 173
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
+ +E +++DA+A+ L +S+GD+RRA+ LQ SI + G P+
Sbjct: 174 VVITKEQVDIDAKAVDALVQLSKGDMRRALNVLQACKAATAGSIDLDMIYECIGAPHPQD 233
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+E + D+ A +N A + L F ++ ++++ + I K L+
Sbjct: 234 IETVLDSILKDDWTTAYITINKFKTTKGLALIDLIAGFVDILNNYKLNNKTRVGILKGLS 293
Query: 345 EVDKCLVDGADEYLQ 359
+++ + G ++ +Q
Sbjct: 294 DIEYGISKGGNDKIQ 308
>gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae]
gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae]
Length = 332
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 177/309 (57%), Gaps = 12/309 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ ++ + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTISRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS + M R+ I +
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSPDQMMPRLEKIIDA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L ++++GD+R+ + LQ F + ++ + G + +E +
Sbjct: 184 EAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAF-DKVNEDNVYTCVGYPLRQDIEQIL 242
Query: 290 AVCRSGD-FDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
SG+ + + K V N A G +L++L V+ E I K LA+++
Sbjct: 243 KALLSGNSVEDSFKTVENAKYARGLALEDILTELHLFVMRLELPMSVMNKLIVK-LAQIE 301
Query: 348 KCLVDGADE 356
+ L G E
Sbjct: 302 ERLAKGCTE 310
>gi|358375659|dbj|GAA92238.1| activator 1 37 kDa subunit [Aspergillus kawachii IFO 4308]
Length = 352
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 173/311 (55%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E V L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPVFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ L++ + R+ +C+
Sbjct: 141 GAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQIVKRLKQVCDA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVEHNEEGIAALVFSAEGDMRQAINNLQSTWSGFG-FVSGDNVFRVVDSPHPIKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A + +N + GY + ++S +F V +S+ + + +
Sbjct: 260 KACWEGKIDAALETLNELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMR 319
Query: 350 LVDGADEYLQL 360
++DG LQL
Sbjct: 320 ILDGVQSLLQL 330
>gi|295669055|ref|XP_002795076.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285769|gb|EEH41335.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 352
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 130/355 (36%), Positives = 186/355 (52%), Gaps = 17/355 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQP-----WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
PE S KR + L + P WVEKYRP + D+ E + L N PH
Sbjct: 4 PESSSAAAKRGLQENLAGAPPDYELPWVEKYRPVYLDDIVGNTETIERLKIIARDGNMPH 63
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++ G PG GKTT+ L +A Q+ G + YK VLELNASD+RGI+VVR +IK FA
Sbjct: 64 VIISGMPGIGKTTSILCLARQMLG-DSYKEAVLELNASDERGIDVVRNRIKGFA------ 116
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q++ P +K++ILDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL S
Sbjct: 117 -QKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQS 175
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA R+ L++ + R+ IC E + + ++ L ++GD+R+AI LQ F
Sbjct: 176 RCAILRYARLTDAQILKRLTQICKTENVKHSEDGIAALIFSAEGDMRQAINNLQSTWAGF 235
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
G ++ ++ V P V+ + C GD D A +N + GY + ++S +F V
Sbjct: 236 G-FVSGDNVFRVVDSPHPIKVQAMIKACWEGDIDAALDTLNELWDLGYSSHDIISTMFRV 294
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM-PEEF 378
+S+ + K + +++G +QL + + R NM PE F
Sbjct: 295 TKTIPMLSEHAKLEFIKEIGFAHMRILEGVQTLVQLSGCVAKLCR--INMKPESF 347
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 185/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
2088]
gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
2088]
Length = 318
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 184/325 (56%), Gaps = 15/325 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV +Q+ VV L +E P++LF GP G GKTT ALA+A ++ G E
Sbjct: 5 WTEKYRPKVLDDVVNQKHVVSRLKKYVEKKTLPNLLFAGPAGVGKTTVALALAREILG-E 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+ VRT+IK F + + P++I+ LDE D+MT D
Sbjct: 64 YWQQNFLELNASDARGIDTVRTEIKNFCRLRPINA---------PFRIVFLDEVDNMTRD 114
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y++ F CNY S+IIEP+ SRC FRF PL + + R+ +IC +E
Sbjct: 115 AQQALRREMEMYAETATFILSCNYSSKIIEPVQSRCVVFRFLPLKSKDIIKRLKYICEKE 174
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
++ + +AL + ++GDLR+AI LQ AA L +IT D+ V PE V +
Sbjct: 175 NVDYEEKALDAIVYFAEGDLRKAINILQAAAAL-DKTITEDDIYDVVSKARPEDVRKMIV 233
Query: 291 VCRSGDFDLANKEVNNI-IAEGYPASLLLSQL---FDVVVETEDISDEQQARICKCLAEV 346
+G+F A + + I I+ G L+ Q+ F + ++ +E + + E
Sbjct: 234 KALNGEFLKAREMLREIMISYGVSGEDLIDQIYREFSRLAIDGEVDEETYVKFVDVIGEY 293
Query: 347 DKCLVDGADEYLQLLDVASNVIRAV 371
D + +GA+ +QL + ++++R +
Sbjct: 294 DFRIREGANPRIQLESLLASLLRPI 318
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 192/319 (60%), Gaps = 11/319 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + + PWVEKYRP+++ D+ ++++ + + PH+LFYGPPGTG+T+T LA
Sbjct: 8 PLQERNLPWVEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGETSTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + S VLELNASDDRGI+VVR + +FA+ + +RG +K++ILD
Sbjct: 68 AKQLYKEKEFTSMVLELNASDDRGIDVVRGPVLSFASTR--TIFKRG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD MT+DAQNALRR +E Y++ TR ICNY+S+II L SRC +FRF PLS + M R
Sbjct: 120 EADHMTQDAQNALRRVIEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPR 179
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ ++ +E ++++ + + ++S GD+RR++ LQ + +G +T + + +G
Sbjct: 180 LEYVVQQESIDINPGGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHPLR 238
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
+ + + DF A KE+ + +G + +L+++ +++ D + +
Sbjct: 239 SDIANILDWSLNKDFTSAYKEILQLKTLKGLALNDILTEVH-LLIHRVDFPPAIRIGLLI 297
Query: 342 CLAEVDKCLVDGADEYLQL 360
LA+++ L G +E +QL
Sbjct: 298 KLADIEHRLASGTNEKIQL 316
>gi|121703562|ref|XP_001270045.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
gi|119398189|gb|EAW08619.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
Length = 352
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 180/331 (54%), Gaps = 12/331 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E V L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 88 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKIVILDEADSMTP 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+ IC+
Sbjct: 141 GAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVQRLKQICDA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG + ++ V P V+ +
Sbjct: 201 EKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFG-LVNGDNVFRVVDSPHPIKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A + +N + GY + ++S +F V +S+ + + +
Sbjct: 260 KACWEGKIDAALETLNELWNLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
++DG LQL S + + NM P+ F+
Sbjct: 320 ILDGVQSLLQLSGCVSKLCK--INMKPQLFE 348
>gi|307179094|gb|EFN67566.1| Replication factor C subunit 2 [Camponotus floridanus]
Length = 349
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 186/340 (54%), Gaps = 10/340 (2%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S ++K K + PW+EKYRP+ D+ E+ V L + N P+++ G
Sbjct: 17 PSTSNSDMKIKEKDSKSQNLPWIEKYRPQVFSDIVGNEDTVSRLAVFAQHGNTPNIIIAG 76
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 77 PPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA-------QKKV 128
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN IIEP+ SRCA
Sbjct: 129 NLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACNNTEEIIEPIQSRCAML 188
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
R+ L++ + ++VL +C +E L+ + + + +QGD+R+A+ LQ F + +
Sbjct: 189 RYGKLTDAQILAKVLEVCEKEKLSYTDDGMEAIVFTAQGDMRQALNNLQSTYNGF-NHVN 247
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
+++ V P +V+ + C GD A +++ GY A ++S +F V +
Sbjct: 248 GENVFKVCDEPHPLIVKEMLDDCIKGDVSKACTVMDHFWKMGYSAEDIVSNIFK-VCKNH 306
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
+ ++ + K + +V+G + LQL + + + R
Sbjct: 307 AMDEKLKLIFVKEIGITHMGIVEGINSLLQLHALVAKLCR 346
>gi|357614163|gb|EHJ68945.1| replication factor C subunit 2 [Danaus plexippus]
Length = 349
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 176/314 (56%), Gaps = 10/314 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S PW+EKYRP+ D+ E+ V L T N P+++ GPPG GKTTT L +A L
Sbjct: 30 SHLPWIEKYRPQTFTDIVGNEDTVSRLAVFARTGNAPNIIIAGPPGVGKTTTILCLARVL 89
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
GP +K VLELNAS+DRGI+VVR KIK FA Q++ P +KI+ILDEADS
Sbjct: 90 LGPA-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIVILDEADS 141
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+ AQ ALRRTME YS TRF N +IIEP+ SRCA R+ LS+ + ++V+ +
Sbjct: 142 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYTKLSDAQILAKVIEV 201
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
C +E L+ E ++ + +QGDLR A+ LQ A+ F + ++ ++ V P +V+
Sbjct: 202 CEKEDLSYTEEGVNAVVFTAQGDLRAALNNLQSTAQGF-AHVSPDNVFKVCDEPHPMLVK 260
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ C D A K + + GY +LS +F V +T +S++ + + K +
Sbjct: 261 TMLEACTRKDIYEAYKVIAKLCRLGYATEDILSNMFR-VSKTLSVSEDVRLGLIKQIGLT 319
Query: 347 DKCLVDGADEYLQL 360
DG LQL
Sbjct: 320 QMRAADGLTSQLQL 333
>gi|299471716|emb|CBN76937.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 332
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 176/320 (55%), Gaps = 9/320 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV E+ + L E N P+++ GPPGTGKTT+ A+AH + G
Sbjct: 11 PWVEKYRPNKLDDVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y + VLELNASD RGI VVR IK F Q++ P +K+IILDEADSMT
Sbjct: 70 DAYANAVLELNASDSRGIEVVRNTIKMFT-------QKKVTLPPGQHKVIILDEADSMTA 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA RF LSEE + R+ +C
Sbjct: 123 SAQQALRRTMEIYSHTTRFALACNVSTKIIEPIQSRCAILRFSRLSEEEILLRLQQVCEA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++ + L + ++GD+R A+ LQ FG + ++ V P VV +
Sbjct: 183 EQVSYSPDGLEAIIFTAEGDMRNALNNLQATHSGFG-HVDQANVFKVCDQPHPGVVLEIL 241
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C GD A++ + + GY ++ ++ +F V ++++ + + K +
Sbjct: 242 KSCVEGDCAKASRRMKALYDTGYSSNDIIGTVFRVCKNQLEVNEGAKLEMIKEVGFTHVR 301
Query: 350 LVDGADEYLQLLDVASNVIR 369
+ DG + LQL+ + + + R
Sbjct: 302 VADGVNSLLQLMGMCARLCR 321
>gi|389627572|ref|XP_003711439.1| replication factor C subunit 4 [Magnaporthe oryzae 70-15]
gi|351643771|gb|EHA51632.1| replication factor C subunit 4 [Magnaporthe oryzae 70-15]
gi|440468926|gb|ELQ38053.1| replication factor C subunit 4 [Magnaporthe oryzae Y34]
gi|440480570|gb|ELQ61229.1| replication factor C subunit 4 [Magnaporthe oryzae P131]
Length = 358
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 181/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 35 PWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLG- 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 94 DSYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+L I
Sbjct: 147 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEA 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 207 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTYSGFG-FVSGDNVFKVVDSPHPIKVQAML 265
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V + +S+ + K +
Sbjct: 266 KACHEGNVDSALDALRELWGLGYSSHDIISTMFKVTKTIQTLSEHTKLEFIKEIGFAHMK 325
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G LQL S + +C + P++F+
Sbjct: 326 ILEGVQTLLQL----SGCVVRLCKLNMDPKKFE 354
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 181/312 (58%), Gaps = 12/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 40 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGS 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y+ ++LELNASDDRGI+VVR +IK FA + R + +K+IILDEAD MT
Sbjct: 100 E-YRKQILELNASDDRGIDVVREQIKNFA-------ETRTLF-SKGFKLIILDEADMMTT 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++I+ + SRC +FRF PL + R+ +
Sbjct: 151 AAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPISEVEKRLQKVIES 210
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L + L +S+GD+RRA+ LQ + I ++ + +G P +E +
Sbjct: 211 EGVKLTDDGKKALLKLSKGDMRRALNVLQACHAAY-DLIGEAEIYNCTGNPHPSDIETVV 269
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
S DF ++K ++ + E G L++ +++ +ET D + + LA ++
Sbjct: 270 NSMLSDDFTTSHKMISALKVERGLALPDLINGVYE-YIETVDFKPNARIYLLDILATIEH 328
Query: 349 CLVDGADEYLQL 360
L GA+E +QL
Sbjct: 329 RLSTGANEKIQL 340
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 15 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKD 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 75 KEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 126
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS+ M R+ H+ +
Sbjct: 127 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQ 186
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + + ++S GD+RR++ LQ +G +T + + + +G + +
Sbjct: 187 ESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG-KVTEETVYTCTGHPLRSDIANIL 245
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A ++ + +G +L+++ +++ D + + LA+++
Sbjct: 246 DWALNKDFTTAYNQILELKTLKGLALHDILTEVH-LLIHRVDFPPSIRMGLLIKLADIEY 304
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 305 RLASGTSEKIQL 316
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 188/319 (58%), Gaps = 11/319 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGK +T LA
Sbjct: 8 PLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKISTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + + VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 AKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT DAQNALRR +E Y++ TRF ICNY+S+II L SRC + RF PLS++ M R
Sbjct: 120 EADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPR 179
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ H+ +E +++ + + + ++S GD+RR++ LQ + +G +T ++ + +G
Sbjct: 180 LEHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDNVYTCTGHPLR 238
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
+ + + DF A K+ + +G +L+++ +V+ D + +
Sbjct: 239 SDIANILEWALNKDFSTAYKQTLQLKTLKGLALHDILTEIH-LVIHRVDFPPAIRMGLLI 297
Query: 342 CLAEVDKCLVDGADEYLQL 360
LAE++ L G E +QL
Sbjct: 298 KLAEIEYRLASGTSEKIQL 316
>gi|399215831|emb|CCF72519.1| unnamed protein product [Babesia microti strain RI]
Length = 347
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 179/325 (55%), Gaps = 11/325 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW EKYRP + + ++++ + + E PH+LF+GPPGTGKT+T LAI+ L+G
Sbjct: 7 PWTEKYRPPDLDSIISHKDIINTIKSFTEVGQIPHLLFHGPPGTGKTSTILAISKHLYG- 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA---VGSGQRRGGYPCPPYKIIILDEADS 166
VLELNASDDRGINVVR KIKTFA V S K+IILDEAD
Sbjct: 66 NYANVYVLELNASDDRGINVVRDKIKTFAEALNRFVPSSDNPANQVKTNLKLIILDEADQ 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT +Q ALRR ME Y+K RF ICNY+ +II P+ SRC FRF PL E + R L I
Sbjct: 126 MTNASQGALRRIMEIYAKNVRFCLICNYMHKIISPIQSRCTGFRFSPLDENDLRRRTLEI 185
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSGVIP 281
EG+ L+ LS L I+QGD+R+ + Q AA S I D+++ SG
Sbjct: 186 ATNEGITLEENGLSALIEIAQGDMRKVLNTFQIAAMSKLDSQDRNIIDVNDILNASGTPL 245
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARIC 340
+ V+ +F F + + ++ +GY L++ L+ ++++ D ++
Sbjct: 246 EDEVKSIFNALVQSTFSECIQIIRHVQELKGYSLQDLVTCLYKLIIKI-DWPTIVIVQLI 304
Query: 341 KCLAEVDKCLVDGADEYLQLLDVAS 365
+A++++ L GA+E +Q+ + S
Sbjct: 305 IRMADIEERLATGANENIQICALVS 329
>gi|392575134|gb|EIW68268.1| hypothetical protein TREMEDRAFT_44679 [Tremella mesenterica DSM
1558]
Length = 346
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 178/326 (54%), Gaps = 11/326 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + V L E N PH++ G PG GKTT+ +AH L G
Sbjct: 26 PWVEKYRPVLLDDIVGNTDTVERLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLG- 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 85 ESYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 137
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L + + R+ +C
Sbjct: 138 GAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLKDAEVLKRLKELCEM 197
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + LS L ++GD+R+AI LQ FG ++ ++ + P VV +
Sbjct: 198 EDVKHNDAGLSALIFTAEGDMRQAINNLQSTHSGFG-FVSQDNVFKICDQPHPIVVRHMI 256
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ G+ D A +N + +GY A +++ +F V E++ + + + +
Sbjct: 257 KACQKGEIDDALARINELWDQGYSAVDIVTTVFRVTKGMEELPEVLKLDYIREIGWTHMR 316
Query: 350 LVDGADEYLQLLDVASNVIRAVCNMP 375
+++G +QL + + + R MP
Sbjct: 317 ILEGVGTLVQLGAMVARLCRV--TMP 340
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 15 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKD 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 75 KEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 126
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS+ M R+ H+ +
Sbjct: 127 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQ 186
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + + ++S GD+RR++ LQ +G +T + + + +G + +
Sbjct: 187 ESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG-KVTEETVYTCTGHPLRSDIANIL 245
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A ++ + +G +L+++ +++ D + + LA+++
Sbjct: 246 DWALNKDFTTAYNQILELKTLKGLALHDILTEVH-LLIRRVDFPPSIRMGLLIKLADIEY 304
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 305 RLASGTSEKIQL 316
>gi|226294707|gb|EEH50127.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb18]
Length = 352
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 129/355 (36%), Positives = 186/355 (52%), Gaps = 17/355 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQP-----WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
PE S KR + L + P WVEKYRP + D+ E + L N PH
Sbjct: 4 PESSSAAAKRGLQENLAGAPPDYELPWVEKYRPVYLDDIVGNTETIERLKIIARDGNMPH 63
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++ G PG GKTT+ L +A Q+ G + YK VLELNASD+RGI+VVR +IK FA
Sbjct: 64 VIISGMPGIGKTTSILCLARQMLG-DSYKEAVLELNASDERGIDVVRNRIKGFA------ 116
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q++ P +K++ILDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL S
Sbjct: 117 -QKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQS 175
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA R+ L++ + R+ IC E + + ++ L ++GD+R+AI LQ F
Sbjct: 176 RCAILRYARLTDAQILKRLTQICQAENVKHSEDGIAALIFSAEGDMRQAINNLQSTWAGF 235
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
G ++ ++ V P V+ + C G+ D A +N + GY + ++S +F V
Sbjct: 236 G-FVSGDNVFRVVDSPHPIKVQAMIKACWEGNIDAALDTLNELWDLGYSSHDIISTMFRV 294
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM-PEEF 378
+S+ + K + +++G +QL + + R NM PE F
Sbjct: 295 TKTIPTLSEHAKLEFIKEIGFAHMRILEGVQTLVQLSGCVAKLCR--INMKPESF 347
>gi|170589980|ref|XP_001899751.1| Activator 1 40 kDa subunit [Brugia malayi]
gi|158592877|gb|EDP31473.1| Activator 1 40 kDa subunit, putative [Brugia malayi]
Length = 326
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 180/323 (55%), Gaps = 17/323 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ SS PWVEKYRPK + +V E V++ L + N P+++ GPPG GKTT+ A+A
Sbjct: 1 MNSSTPWVEKYRPKMLSEVVGNEFVIQRLAAFAKQGNTPNIIISGPPGCGKTTSMWALAR 60
Query: 105 QLFGPELYKSRVLELNASDDR-------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
++ G L K+ LELNASDDR GI+VVR KIKTFA Q + P +K
Sbjct: 61 EMLGDRL-KNACLELNASDDREIFFKFSGIDVVRNKIKTFA-------QSKVTLPPGRHK 112
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
IIILDE DSMTE AQ ALRRTME YSK TRF CN ++IEP+ SRCA RF LSEE
Sbjct: 113 IIILDEVDSMTEGAQQALRRTMEIYSKTTRFTLACNQSGKVIEPIQSRCAILRFSKLSEE 172
Query: 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+ R+L IC E + D + L +QGD+R+A+ LQ F +++T+ ++ V
Sbjct: 173 QIVKRLLQICEAEKVTYDDSGIDALVFTAQGDMRQALNNLQCTVVGF-NNVTADNVFRVC 231
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
P++V + C G A + V+++ GY A +L+ + V +T I + +
Sbjct: 232 DEPHPQMVMQIIEHCVHGKVIEAGEIVHSLYRMGYSAEDILNNMVR-VCKTLSIPEYLKL 290
Query: 338 RICKCLAEVDKCLVDGADEYLQL 360
K + +V+G LQL
Sbjct: 291 EYVKEIGLCHVRIVEGVSSLLQL 313
>gi|156537616|ref|XP_001607747.1| PREDICTED: replication factor C subunit 2-like [Nasonia
vitripennis]
Length = 351
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 124/334 (37%), Positives = 185/334 (55%), Gaps = 12/334 (3%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV +K V S+ PW+EKYRP+ D+ E+ V L+ + N P+++ GPPG GK
Sbjct: 23 EVAKK--AVKTSNVPWIEKYRPQVFTDIVGNEDTVERLSIFAQHGNAPNLIIAGPPGVGK 80
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TTT L A L GP +K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 81 TTTILCFARILLGPS-FKDAVLELNASNERGIDVVRNKIKMFA-------QKKVNLAPGK 132
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+KIIILDEADSMT+ AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ LS
Sbjct: 133 HKIIILDEADSMTDGAQQALRRTMEIYSSTTRFALACNNSEKIIEPIQSRCAMIRYGKLS 192
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ + ++V+ +C +E ++ + L + +QGD+R+A+ LQ F + + K++
Sbjct: 193 DAQVLAKVIDVCQKENVSYTDDGLEAIVFTAQGDMRQALNNLQSTVNGF-NHVNGKNVFK 251
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQ 335
V P +V+ + +C G+ A + + ++ GY L+S +F V + I +
Sbjct: 252 VCDEPHPLLVKNMLEICTQGEISKAYEILKHLWHMGYSPEDLISTIFR-VAKNLTIDEYL 310
Query: 336 QARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
+ K + +V+G LQL + + + R
Sbjct: 311 KLEFIKEIGLTHMGIVNGVSSLLQLNSLIARLCR 344
>gi|303271997|ref|XP_003055360.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
gi|226463334|gb|EEH60612.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
Length = 335
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 181/331 (54%), Gaps = 17/331 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
S+ PWVEKYRP ++ ++ + V L T N P+++F GPPG GKTT+ L +AH
Sbjct: 8 NSTLPWVEKYRPTKIDEIVGNADAVERLAAMAATGNVPNLIFSGPPGIGKTTSILCLAHT 67
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L GP YK VLELNASDDRGI+VVR KIK FA Q++ P +KI++LDEAD
Sbjct: 68 LLGPA-YKDAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVLLDEAD 119
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ A+RRTME YS TRF CN +IIEP+ SRCA RF LS++ + RV+
Sbjct: 120 SMTSAAQQAMRRTMEIYSNTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVLERVMK 179
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ +E + + L + + GD+R+A+ LQ FG + +++ V P+V+
Sbjct: 180 VVEKEEVPYVPDGLEAVVFTADGDMRQALNNLQATHSGFG-YVNQENVFKVCDQPHPQVI 238
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC--- 342
+ C G+ D A + + A G+ A ++ ++ V T++ + E K
Sbjct: 239 SDMLTHCLRGNVDDAYDRIKFLYAAGFSAMDIIGTVYRV---TKNFNSEAMPEFVKLEFI 295
Query: 343 --LAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+ + + DG + LQ+ + + + + V
Sbjct: 296 REIGFMHMRVGDGVNSLLQMAGLCAKLCKVV 326
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/318 (38%), Positives = 181/318 (56%), Gaps = 14/318 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L + PWVEKYRP + DV +++ + ++ PH+LFYGPPGTGKT+T +A+A
Sbjct: 24 LNNDLPWVEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVAR 83
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+L+G YK ++LELNASDDRGI+VVR +IK FA + RG + +K+IILDEA
Sbjct: 84 RLYGAN-YKKQILELNASDDRGIDVVRDQIKGFA-------ETRGVF-AKGFKLIILDEA 134
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D MT+ AQ ALRR +E Y++ RF ICNY+++I + SRC +FRF PL + R+
Sbjct: 135 DMMTQAAQAALRRVIEQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPVSEVEKRLQ 194
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI-SVSGVIPPE 283
+ EG+ + E L +S+GD+RRA+ LQ + IT ++ I + +G P+
Sbjct: 195 TVIENEGVKVSPEGKEALLKLSRGDMRRALNVLQACHAAY--DITDEEAIYTCTGNPHPK 252
Query: 284 VVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKC 342
+E + S +F +N++ E G L+S FD V E E + + +
Sbjct: 253 DIENVVNSMMSQEFGTCYHMINSLKTERGLALQDLISGAFDYVQELE-LPPHSRVYLLDQ 311
Query: 343 LAEVDKCLVDGADEYLQL 360
LA ++ L G E LQL
Sbjct: 312 LATIEHRLSTGGSEKLQL 329
>gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa]
gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 173/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ ++ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 13 PWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
K VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 73 N-SKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGQHKIVILDEADSMTS 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 125 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVGA 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F + +++ V P V+ +
Sbjct: 185 EQVPYVPEGLEAIIFTADGDMRQALNNLQATHSGF-HFVNQENVFKVCDQPHPLHVKNMV 243
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G FD A + ++ GY + +++ LF +++ D+++ + K
Sbjct: 244 RQVLEGKFDDACSGLKHLYDMGYSPTDIITTLFR-IIKNYDMAEYMKLEFMKETGFAHMR 302
Query: 350 LVDGADEYLQL 360
+ DG YLQL
Sbjct: 303 ICDGVGSYLQL 313
>gi|431914245|gb|ELK15503.1| Replication factor C subunit 5 [Pteropus alecto]
Length = 345
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 189/316 (59%), Gaps = 15/316 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 22 PWVEKYRPQALNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 82 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 134 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 193
Query: 230 EGLNLDAE---ALSTLS-SISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
E +++ + AL TLS ++S GD+RRA+ LQ + FG +T + + + +G +
Sbjct: 194 EKVDISEDGMKALVTLSKTLSSGDMRRALNILQSTSMAFG-KVTEETVYTCTGHPLKSDI 252
Query: 286 EGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ + DF A + + + +G +L+++ + V D + + +A
Sbjct: 253 ANILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMA 311
Query: 345 EVDKCLVDGADEYLQL 360
+++ L G E +QL
Sbjct: 312 DIEYRLSVGTSEKIQL 327
>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
Length = 331
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 177/317 (55%), Gaps = 10/317 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++D+ EE+V + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 11 PWVEKYRPNNLEDLISHEEIVSTINRFIGQKQLPHLLFYGPPGTGKTSTILACARQLYTP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 71 AQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y++ RF ICNY+S+II L SRC +FRF PLS E M R+ I
Sbjct: 123 DAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLDKIVEA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + L ++++GD+R+ + LQ F + + V + + + L
Sbjct: 183 EAVTITDDGKKALLTLAKGDMRKVLNVLQSTVMAFNEVNENNVYMCVGYPLKQDTEQILN 242
Query: 290 AVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
A+ F A K + + + G +L++L V+ E I K LA++++
Sbjct: 243 ALLSGESFKAAFKTIEDAKSRRGLALEDILTELHLFVMRLELPMSVMNKLIIK-LAQIEE 301
Query: 349 CLVDGADEYLQLLDVAS 365
L G E Q+ + S
Sbjct: 302 RLSKGCTEGAQIAALVS 318
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 182/320 (56%), Gaps = 17/320 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E VV L L PH+LFYGPPGTGKT+T LA+A +++GP
Sbjct: 30 PWVEKYRPDTLDDVTGHEGVVTTLKKLLANKKFPHLLFYGPPGTGKTSTILAVAREIYGP 89
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCP--PYKIIILDEAD 165
YKS VLELNASDDRGI+VVR +IK FA+ S Q +RGG +K++ILDEAD
Sbjct: 90 S-YKSMVLELNASDDRGIDVVRDQIKVFAS----SRQIFQRGGEENARSNFKLVILDEAD 144
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQNALRR +E Y+ TRF + NY ++ L SRC +FRF PL E + R++
Sbjct: 145 AMTNVAQNALRRVIEQYTTHTRFCILANYTHKLNPALLSRCTRFRFSPLPEAAIDKRIMQ 204
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS------GV 279
+ + E + + +A + L +S+GD+RRA+ LQ G KD I++S G
Sbjct: 205 VIDAEKVKIAPDAKAALLELSKGDMRRALNVLQACHT--GLEHPGKDTITLSQVYLCVGS 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
P ++ + + D+ A V+ + E A + + + + ++ ++ + +
Sbjct: 263 PDPADIDTILTSILNDDWTTAYDTVSTLKRERGLALVDILEKLSAELMALNLKEKTKIAL 322
Query: 340 CKCLAEVDKCLVDGADEYLQ 359
LA+++ L +G E +Q
Sbjct: 323 LSKLADIEYRLANGGSEKIQ 342
>gi|320593090|gb|EFX05499.1| aaa ATPase domain containing protein [Grosmannia clavigera kw1407]
Length = 357
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 171/311 (54%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 35 PWVEKYRPAFLDDIVGNTETIERLKIIAKDGNMPHIIISGMPGIGKTTSVLCLARQLLG- 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 94 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKIVILDEADSMTS 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+L I
Sbjct: 147 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLLQIIEA 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 207 EQVRYSDDGLAALVFSAEGDMRQAINNLQSTHAGFG-FVSGDNVFKVVDAPHPIKVQAML 265
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A ++ + GY + ++S +F V +S+ + + +
Sbjct: 266 KACHEGNVDAALDILHELWRLGYSSHDIISTMFRVTKTMPGLSEHAKLEFIREIGFTHMK 325
Query: 350 LVDGADEYLQL 360
+++G LQL
Sbjct: 326 ILEGVQTLLQL 336
>gi|299756140|ref|XP_001829123.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
gi|298411540|gb|EAU92758.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
Length = 323
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 183/323 (56%), Gaps = 13/323 (4%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP+ + D+ + + L NCPH++ G PG GKTT+ +AHQL G +
Sbjct: 5 VEKYRPQVLDDIVGNTDTIERLKVIARDGNCPHLIISGMPGIGKTTSIHCLAHQLLG-DA 63
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
YK VLELNASD+RGI+VVR KIK FA Q++ P +KIIILDEADSMT A
Sbjct: 64 YKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPGRHKIIILDEADSMTPGA 116
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
Q ALRRTME +S TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC E
Sbjct: 117 QQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEVLKRLLEICEMEK 176
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAV 291
+ + + L+ L ++GD+R+AI LQ FG +++ ++ V P VV+ +
Sbjct: 177 VQYNDDGLTALIFTAEGDMRQAINNLQSTHSGFG-FVSADNVFKVCDQPHPIVVQSMIRA 235
Query: 292 CRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLV 351
C G+ D A ++++ + +GY A ++ LF VV +D+ + + K + ++
Sbjct: 236 CLKGEIDPALEKLHELWDQGYSAVDIVVTLFRVVKTFDDMPEYTKLEYIKEIGFTHMRIL 295
Query: 352 DGADEYLQLLDVASNVIRAVCNM 374
+G +QL + ++ +C M
Sbjct: 296 EGVGTLIQL----AGLVARLCKM 314
>gi|401424285|ref|XP_003876628.1| putative replication factor C, subunit 4 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492871|emb|CBZ28150.1| putative replication factor C, subunit 4 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 360
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 190/354 (53%), Gaps = 29/354 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-- 107
PWVEKYRP+ V D+ E + L + N P++L GPPGTGKTT+ L +A L
Sbjct: 7 PWVEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLLLQ 66
Query: 108 --------------GPELYKSRVLELNASDDRGINVVRTKIKTFAAV---------AVGS 144
++ K VLELNASDDRG++VVR KIK FA + G
Sbjct: 67 STDAGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKFFSTGE 126
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
G + + +KI++LDEADSMT AQ ALRRTME +S TRF F CN S+IIEP+ S
Sbjct: 127 GVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSKIIEPIQS 186
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA RFK LS+ + R++++ +E ++ + L L +++GDLR+A+ LQ +
Sbjct: 187 RCAVVRFKKLSDADILKRLVYVIQQENVSYTDDGLEALLYLAEGDLRQALNALQATHTGY 246
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVC-RSGDFDLANKEVNNIIAEGYPASLLLSQLFD 323
G + + ++ V P +VE + C + + A++E+N ++ GY +++ F
Sbjct: 247 G-LVNADNVFKVCDQPHPLLVENVITACVMKRNIEEAHREMNRLLNRGYAPVDVIATFFK 305
Query: 324 VVVETEDI--SDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMP 375
VV + S+ QQ + K + E + +G LQL + + +I AV N P
Sbjct: 306 VVQTNARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARMIAAVENNP 359
>gi|452986023|gb|EME85779.1| hypothetical protein MYCFIDRAFT_41166 [Pseudocercospora fijiensis
CIRAD86]
Length = 353
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 170/311 (54%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 30 PWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLG- 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P KI+ILDEADSMT
Sbjct: 89 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRQKIVILDEADSMTS 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+ IC
Sbjct: 142 GAQQALRRTMEIYSGTTRFAFACNLSNKIIEPLQSRCAILRYSRLTDAQVVKRLYQICEA 201
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG + ++ V P V+ +
Sbjct: 202 EKVEYSDDGIAALVFSAEGDMRQAINNLQSTHAGFG-FVNGDNVFRVVDSPHPIKVQAMI 260
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ G D A ++ + GY + ++S +F V +S+ + + +
Sbjct: 261 KSCQEGKIDEALDDLKELWNLGYSSHDIISTMFKVTKTIPSLSEHTKLEFIREIGFTHMR 320
Query: 350 LVDGADEYLQL 360
+++G YLQL
Sbjct: 321 ILEGVQTYLQL 331
>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|374107422|gb|AEY96330.1| FADR111Wp [Ashbya gossypii FDAG1]
Length = 321
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 171/311 (54%), Gaps = 12/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK +KDV +E V L N PHM+ G PG GKTT+ +AH+L G
Sbjct: 11 PWVEKYRPKLLKDVVGNDETVERLQQIARDGNMPHMIISGLPGIGKTTSIHCLAHELLG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 DAYSQAVLELNASDDRGIDVVRNQIKQFA-------QKKCTLPPGKHKIIILDEADSMTS 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+ I
Sbjct: 123 GAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLFEIIKA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L L ++GD+R+AI LQ F + + ++ + P V++ +
Sbjct: 183 ENVQYTNDGLEALIFTAEGDMRQAINNLQSTVAGF-TLVNGDNVFKIVDSPHPLVIKKML 241
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
S D + + + +GY A +++ F V+ +I + + + K +
Sbjct: 242 L---SATLDESLNYLRELWGKGYSAVDIITTCFRVMKNLTEIKEPLRLEMIKEIGFTHMR 298
Query: 350 LVDGADEYLQL 360
+++G YLQL
Sbjct: 299 ILEGVGTYLQL 309
>gi|195337341|ref|XP_002035287.1| GM14011 [Drosophila sechellia]
gi|194128380|gb|EDW50423.1| GM14011 [Drosophila sechellia]
Length = 331
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 184/331 (55%), Gaps = 18/331 (5%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PEKS D KR S PW+EKYRP + K++ E+ V L+ N P+++ G
Sbjct: 5 PEKSAD-YKR-------SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ + E LN + L + +QGD+R+ + LQ A+ FG IT
Sbjct: 169 RFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-DIT 227
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
++++ V P+++E + C + D A K + + GY +++ +F V
Sbjct: 228 AENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRI- 286
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+I + + + + ++DG + LQL
Sbjct: 287 NIDEHLKLDFIREIGMTHMKIIDGINSLLQL 317
>gi|453087153|gb|EMF15194.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 349
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 177/332 (53%), Gaps = 16/332 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 26 PWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLG- 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P KI+ILDEADSMT
Sbjct: 85 EAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRQKIVILDEADSMTS 137
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+ IC
Sbjct: 138 GAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRINQICKA 197
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG + S ++ V P V+ +
Sbjct: 198 ENVQFSDDGLAALVFSAEGDMRQAINNLQSTHAGFG-FVNSDNVFRVVDSPHPIKVQAMI 256
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C + D A + + GY + ++S +F V +++ + + +
Sbjct: 257 KSCHERNVDEALDALKELWGLGYSSHDIISSMFKVTKTIPSLAEHTKLEFIREIGFTHMR 316
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEF 378
+++G YLQL + I +C + PE F
Sbjct: 317 ILEGVQTYLQL----AGCIAKLCKLNMKPELF 344
>gi|212546239|ref|XP_002153273.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
gi|210064793|gb|EEA18888.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
Length = 350
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 172/311 (55%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + L + N PH++ G PG GKTT+ L +A Q+ G
Sbjct: 29 PWVEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQMLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTP 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+ IC
Sbjct: 141 GAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDGQVVKRLSQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E ++ + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVDFSEDGIAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDSPHPIKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A +N + GY + ++S +F V + +S+ + K +
Sbjct: 260 KACWEGKVDAALDILNELWNLGYSSHDIISTMFRVTKTIQTLSEHAKLEFIKEIGFTHMR 319
Query: 350 LVDGADEYLQL 360
++DG LQL
Sbjct: 320 ILDGVGTLLQL 330
>gi|195146716|ref|XP_002014330.1| GL19009 [Drosophila persimilis]
gi|194106283|gb|EDW28326.1| GL19009 [Drosophila persimilis]
Length = 333
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 168/283 (59%), Gaps = 11/283 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP + D+ +E++ + + PH+L+YGPPGTGKT+T LA A QL+
Sbjct: 11 KPWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLYYGPPGTGKTSTILACARQLYP 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P L+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 71 PALFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMT 122
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS + M R+ I
Sbjct: 123 NDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQ 182
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E + + L ++S+GD+R+ + LQ A F + ++ +G + +E +
Sbjct: 183 SEDIKITENGKKALLTLSKGDMRKVLNVLQSTAMAF-DVVNEDNVYMCAGYPLRQDIENI 241
Query: 289 FAVCRSG-DFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETE 329
SG +F+++ + V+ A G ++++L +V+ E
Sbjct: 242 LKALLSGHNFEVSFQNVDVAKSARGLALEDIITELHLIVMRLE 284
>gi|367024189|ref|XP_003661379.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
gi|347008647|gb|AEO56134.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 178/333 (53%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E V L N PH++ G PG GKTT+ L +A QL G
Sbjct: 33 PWVEKYRPVFLDDIVGNTETVERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLG- 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 92 DAYKEAVLELNASDERGIEVVRQRIKGFA-------QKKVTLPQGRHKIVILDEADSMTS 144
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+L I
Sbjct: 145 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEA 204
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 205 EKVEYSDDGLAALVFTAEGDMRQAINNLQSTHAGFG-FVSGDNVFKVVDSPHPIKVQAML 263
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 264 KACYEGNIDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMK 323
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G LQL S + +C + P++F+
Sbjct: 324 ILEGVQTLLQL----SGCVARLCKLNMDPKKFE 352
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 166/260 (63%), Gaps = 10/260 (3%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
++P S+ + A ++SS PWVEKYRP+ + DVA ++V + + PH+L
Sbjct: 15 AAPPHSKGKAPLSAAAAVRSS-PWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLL 73
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQ 146
YGPPGTGKT+T LA+A +++G + Y + +LELNASD+RGI VVR +I+ FA A ++ G
Sbjct: 74 YGPPGTGKTSTILAVARKIYGSQ-YGNMILELNASDERGIGVVRQQIQDFASAHSLSFGA 132
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+ P K+++LDEAD+MT+DAQ ALRR +E Y++ TRF ICN++++II L SRC
Sbjct: 133 K------PAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRC 186
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+FRF PL +S R+ HI EGL++D L+ L +S GD+R+A+ LQ + +
Sbjct: 187 TRFRFAPLDGSHVSERLQHIIKSEGLDVDEGGLTALVRLSSGDMRKALNILQ-STHMASQ 245
Query: 267 SITSKDLISVSGVIPPEVVE 286
IT + + +G P+ +E
Sbjct: 246 QITEEAVYLCTGNPMPKDIE 265
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 152/229 (66%), Gaps = 9/229 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 41 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 100
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 101 KEFGSMVLELNASDDRGIEIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 153 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEE 212
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E ++L + + L ++S GD+RRA+ LQ FG +T + + + +G
Sbjct: 213 EKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTG 260
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 184/312 (58%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + ++ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 16 PWVEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKD 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI++VR + +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 76 REFNSMVLELNASDDRGIDIVRGPVLSFASTR--TIFKKG------FKLVILDEADAMTQ 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS E+M R+ H+ E
Sbjct: 128 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKE 187
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RR++ LQ + S +T + + +G + +
Sbjct: 188 EHVDISPDGMKALVTLSNGDMRRSLNILQSTNMAY-SKVTEDTVYTCTGHPLRSDIANIL 246
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A K + + +G +L+++ + V D + + +A+++
Sbjct: 247 DWMLNKDFTSAYKNIMELKTLKGLALHDILTEI-HLYVHRVDFPALVRIHLLVKMADIEY 305
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 306 RLASGTSEKIQL 317
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 186/329 (56%), Gaps = 17/329 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV Q++VV+ + + PH+LFYGPPGTGKT+T +A+A +L+G
Sbjct: 7 PWVEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALARELYGK 66
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
Y++ VLELNASDDRGI+VVR +IK FA+ SG +K+IILDEAD+M
Sbjct: 67 N-YRNMVLELNASDDRGIDVVRDQIKNFASTRQIFNSG----------FKLIILDEADAM 115
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
+ AQNALRR +E Y+K TRF + NY ++ L SRC +FRF PL++ + RV ++
Sbjct: 116 SNAAQNALRRVIEKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLADSALQDRVDYVI 175
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISVSGVIPPEVV 285
EGL + ++A +L +S+GD+RRA+ LQ A G IT + G P+ V
Sbjct: 176 KAEGLKIASDARQSLLELSEGDMRRALNVLQACATAVESGEEITQDMVYECVGAPRPQSV 235
Query: 286 EGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ S D+ A + I EG L+S F V++ ++ + + + L
Sbjct: 236 MTVLDAIMSNDWTDAYATMTKIRKTEGLALVDLMSG-FVSVLDKYELKPRTRMAVLQGLG 294
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRAVCN 373
+++ + G + +Q V + A+ N
Sbjct: 295 DIEYSISKGGSDKIQCTAVIGVIKNALEN 323
>gi|195587662|ref|XP_002083580.1| GD13291 [Drosophila simulans]
gi|194195589|gb|EDX09165.1| GD13291 [Drosophila simulans]
Length = 331
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 184/331 (55%), Gaps = 18/331 (5%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PEK+ D+ + S PW+EKYRP + K++ E+ V L+ N P+++ G
Sbjct: 5 PEKTADDKR--------SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ + E LN + L + +QGD+R+ + LQ A+ FG IT
Sbjct: 169 RFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-DIT 227
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
++++ V P+++E + C + D A K + + GY +++ +F V
Sbjct: 228 AENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRI- 286
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+I + + + + ++DG + LQL
Sbjct: 287 NIDEHLKLDFIREIGMTHMKIIDGINSLLQL 317
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 197/346 (56%), Gaps = 7/346 (2%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T +SP+K + V P + PWVEKYRP+ + DVA ++V + PH
Sbjct: 14 TYTASPDKGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPH 73
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+L YGPPGTGKT+T LA+A +L+G + Y++ +LELNASDDRGI+VVR +I+ FA+ S
Sbjct: 74 LLLYGPPGTGKTSTILAVARKLYGSQ-YQNMILELNASDDRGIDVVRQQIQDFASTQSLS 132
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
+ K+++LDEAD+MT+DAQ ALRR +E Y+K TRF ICN++++II L S
Sbjct: 133 FGVKSSV-----KLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQS 187
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC +FRF PL ++ R+ H+ EGL+++ L+ +S GD+R+A+ LQ + +
Sbjct: 188 RCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNILQ-STHMA 246
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
IT + + +G P+ +E + + F + K ++ + A + + + +
Sbjct: 247 SQQITEEAVYLCTGNPLPKDIELISYWLLNEQFADSFKRIDEMKTRKGLALIDIVREVTM 306
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
V + + ++ LA+++ L G ++ LQL V ++ RA
Sbjct: 307 FVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRA 352
>gi|429859273|gb|ELA34061.1| activator 1 37 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 361
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 182/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 97 DSYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPQGRHKLVILDEADSMTS 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R+L I
Sbjct: 150 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLLQIIEA 209
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 210 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFG-FVSGDNVFKVVDSPHPIKVQAML 268
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 269 KACYEGNVDSALDSLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 328
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G LQL S + +C NM P++F+
Sbjct: 329 ILEGVQTLLQL----SGCVARLCKINMDPKKFE 357
>gi|310792410|gb|EFQ27937.1| replication factor C [Glomerella graminicola M1.001]
Length = 361
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 182/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 97 DSYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPQGRHKLVILDEADSMTS 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R+L I
Sbjct: 150 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLLQIIEA 209
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 210 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFG-FVSGDNVFKVVDSPHPIKVQAML 268
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 269 KACYEGNIDSALDSLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 328
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G LQL S + +C NM P++F+
Sbjct: 329 ILEGVQTLLQL----SGCVARLCKINMDPKKFE 357
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 153/229 (66%), Gaps = 9/229 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTG 239
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 187/318 (58%), Gaps = 11/318 (3%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
V ++ PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A
Sbjct: 17 VKSANLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACA 76
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
QL+ + + S VLELNASDDRGI +VR I +FA+ + ++G +K++ILDE
Sbjct: 77 KQLYKDKEFNSMVLELNASDDRGIGIVRGPILSFASTR--TIFKKG------FKLVILDE 128
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT++AQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+
Sbjct: 129 ADAMTQEAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRL 188
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPE 283
H+ E +++ + + L ++S GD+RR++ LQ FG +T + + + +G
Sbjct: 189 KHVIESEKVDVSDDGMKALVTLSNGDMRRSLNILQSTNMAFG-KVTEETVYTCTGQPLKS 247
Query: 284 VVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
+ + + DF A + + +G +L+++ + V D + ++
Sbjct: 248 DIANILDWMLNQDFTAAYHNIMELKTLKGLALHDILTEI-HLFVHRVDFPPSVRIQLLIK 306
Query: 343 LAEVDKCLVDGADEYLQL 360
+A+++ L G E +QL
Sbjct: 307 MADIEHRLAAGTSEKIQL 324
>gi|324500315|gb|ADY40152.1| Replication factor C subunit 2 [Ascaris suum]
Length = 364
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 187/325 (57%), Gaps = 14/325 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++DV + ++ L + N P+++ GPPG GKTT+ A+A +L
Sbjct: 45 SIPWLEKYRPQKLQDVVGNKLAIQRLGMFAKQGNLPNIVISGPPGCGKTTSIWALARELL 104
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G ++ ++ LELNASDDRGI+VVR KIK+FA V + R +KIIILDEADSM
Sbjct: 105 GTQIREA-CLELNASDDRGIDVVRNKIKSFAQTKVSLPEGR-------HKIIILDEADSM 156
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TE AQ ALRRTME YSK TRF CN +IIEP+ SRCA RF L +E +++R+L +C
Sbjct: 157 TEGAQQALRRTMEIYSKTTRFALSCNQSDKIIEPIQSRCAILRFSKLKDEEIATRLLQVC 216
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
E + D + L +QGD+R+A+ LQ F +T+ ++ V PE+++
Sbjct: 217 TYEQVVYDESGIDALIFTAQGDMRQALNNLQCTVAGF-KQVTADNVFKVCDEPHPEMIKK 275
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ +C + A + + ++ GY +LS +F V ++ +I + + K +
Sbjct: 276 MLELCVREKVNEATEIMQHLYKMGYSPEDILSNMFR-VCKSANIPEYLKMEYIKEIGNCH 334
Query: 348 KCLVDGADEYLQLLDVASNVIRAVC 372
+V+G LQL S +I +C
Sbjct: 335 VRVVEGVASLLQL----SGLIARLC 355
>gi|255513870|gb|EET90135.1| Replication factor C [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 316
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 180/314 (57%), Gaps = 16/314 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW EKYRPK + +V Q+++V L ++ N P+M+F G G GKTT+A+A+A L+
Sbjct: 2 PWTEKYRPKSLDEVIGQKQIVERLKAFVKQGNFPNMIFAGSAGVGKTTSAIAMAKDLYDD 61
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+L + ELNASD RGI+V+R ++K FA P KII LDEAD++T
Sbjct: 62 DL-NTAFKELNASDARGIDVIRGEVKNFAKTI--------SIARVPVKIIFLDEADALTA 112
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ+ALRRTME +S TRF NY S+IIEP+ SRC FRFKPL+E+ M V I
Sbjct: 113 DAQHALRRTMEKFSAETRFILSANYASKIIEPIQSRCVVFRFKPLTEDDMKEYVNRIVKG 172
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L+ A+ L + GDLR+ LQ AA + IT D+ V+ P+ + +
Sbjct: 173 EGITLEKNAMEALIYVGDGDLRKLTNVLQSAA-MKSEKITEGDIYDVASRARPKEIMSML 231
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDIS-DEQ-QARICKCLAEV 346
GDFD A E++ + + G +L+Q + E +++ DE+ + +I + E
Sbjct: 232 RYAVDGDFDKARNELDTLTLKHGMSGEDILTQCYR---EAQNLHFDEKLKLKIIIYIGEA 288
Query: 347 DKCLVDGADEYLQL 360
+ +V+GA+E +QL
Sbjct: 289 NFRIVEGANERIQL 302
>gi|384501081|gb|EIE91572.1| hypothetical protein RO3G_16283 [Rhizopus delemar RA 99-880]
Length = 343
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 178/325 (54%), Gaps = 13/325 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE V L + N P+++ G PG GKTT+ + +AH++ G
Sbjct: 25 PWVEKYRPLYLKDIVGNEEAVSRLMTIAKDGNMPNLILTGMPGIGKTTSIVCLAHEMLGA 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+V+R++IKTFA Q++ P +KIIILDEADSMT
Sbjct: 85 S-YKDAVLELNASDDRGIDVIRSRIKTFA-------QKKVTLPPGMHKIIILDEADSMTG 136
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SR A R+ L+ E + R+L IC
Sbjct: 137 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRTAVLRYTKLTNEEVLKRLLEICQM 196
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +N + E L L + GD+R+AI LQ F + ++++ V P V + +
Sbjct: 197 EKVNYNDEGLEALIFTADGDMRQAINNLQSTFYGF-KYVNAENVFKVCDQPHPMVAQHII 255
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C D A + + + GY A +++ F +V + + + K +
Sbjct: 256 TCCSEVKLDEAVQCMEELYYLGYSALDIITTFFRMVRSYNALDEGLRLDYLKEIGLTHMR 315
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM 374
++DG LQL S ++ +CN+
Sbjct: 316 ILDGHQSILQL----SGMVARLCNI 336
>gi|402074193|gb|EJT69722.1| replication factor C subunit 4 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 360
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 181/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 35 PWVEKYRPIFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLG- 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 94 DSYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKLVILDEADSMTS 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+L I
Sbjct: 147 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRLLQIIEA 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 207 EGVRHSEDGLAALVFSAEGDMRQAINNLQSTHAGFG-FVSGDNVFRVVDSPHPIKVQAML 265
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ A + + GY + ++S +F V+ +S+ + K +
Sbjct: 266 KACHEGNVGSALDGLRELWDLGYSSHDIISTMFKVIKTIPTLSEHAKLEFIKEIGFAHMK 325
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G LQL S + +C + P++F+
Sbjct: 326 ILEGVQTLLQL----SGCVVRLCKLNMDPKKFE 354
>gi|449460473|ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 172/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 14 PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSMT
Sbjct: 74 N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF L+++ + R++ +
Sbjct: 126 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQA 185
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F + ++ V P V+ +
Sbjct: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGF-RFVNQDNVFKVCDQPHPLHVKNVV 244
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G FD A + + GY + +++ LF +++ D+++ + K
Sbjct: 245 RNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFR-IIKNYDMAEYLKLEFMKETGFAHMR 303
Query: 350 LVDGADEYLQL 360
+ DG YLQL
Sbjct: 304 ICDGVGSYLQL 314
>gi|322703485|gb|EFY95093.1| putative replication factor C [Metarhizium anisopliae ARSEF 23]
Length = 357
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 179/331 (54%), Gaps = 12/331 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+ + R++ I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKRLMQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGNVDSALDTLRELWNLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
+++G LQL + + + NM P++FQ
Sbjct: 325 ILEGVQTLLQLSGCVARLSK--INMDPKKFQ 353
>gi|342183622|emb|CCC93102.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 290
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/264 (41%), Positives = 154/264 (58%), Gaps = 6/264 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + +V EE++ +++ N PH+LFYGPPGTGKTTT A AH L+G
Sbjct: 19 PWVEKYRPATLSEVVAHEEILETTQRLMDSGNMPHLLFYGPPGTGKTTTIKASAHYLYGK 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEADS 166
E ++ VLE+NASDDRGI+VVR +I+ FA +V S + +K++ILDEAD
Sbjct: 79 ERIRANVLEMNASDDRGIDVVRNQIREFASTSSVFFNSASKTSAMSS--FKLVILDEADQ 136
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
M+ DAQ ALRR +E Y++ RF +CN+I++II L SRC +FRF P+ + M R+ I
Sbjct: 137 MSSDAQAALRRIIEKYTRNVRFCIVCNHINKIIPALQSRCTRFRFAPVKKAAMLPRLAFI 196
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
EE + + L +S GD+RR + LQ +A G IT + + +G P V
Sbjct: 197 AQEESIPFTNDGLVAAFRLSNGDMRRCLNTLQASAMSTG-EITEESVYRTTGNPTPADVR 255
Query: 287 GLFAVCRSGDFDLANKEVNNIIAE 310
GL S D+ + V + E
Sbjct: 256 GLVEEMLSSDYATSWNRVLRAVTE 279
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 153/229 (66%), Gaps = 9/229 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTG 239
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 189/315 (60%), Gaps = 11/315 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 38 AAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 97
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI+VVR +I+ FA A ++ G R P K+++LDEAD+
Sbjct: 98 GSQ-YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR------PSVKLVLLDEADA 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ ALRR +E Y++ TRF ICN++++II L SRC +FRF PL + R+ HI
Sbjct: 151 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHI 210
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
EGL++D L+ L +S GD+R+A+ LQ + + IT + + +G P +E
Sbjct: 211 IKSEGLSVDEGGLTALVRLSNGDMRKALNILQ-STHMASQQITEEAVYLCTGNPMPNDIE 269
Query: 287 GLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ + F + K ++++ + +G ++ ++ V + E SD + ++ LA+
Sbjct: 270 RIAFWLLNEPFSTSFKHISDMKMRKGLALVDIIREVTMFVFKIEMPSD-VRVKLINNLAD 328
Query: 346 VDKCLVDGADEYLQL 360
++ L ++ LQL
Sbjct: 329 IEYRLSFACNDKLQL 343
>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
Length = 320
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 174/311 (55%), Gaps = 12/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ E+ V+ L N PHM+ G PG GKTT+ +AH+L G
Sbjct: 10 PWVEKYRPHLLKDIVGNEDTVQRLQTIAADGNMPHMIISGLPGIGKTTSIHCLAHELLG- 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y VLELNASDDRGI VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 69 DAYSQAVLELNASDDRGIEVVRNQIKHFA-------QKKCTLPAGKHKIIILDEADSMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R+L I
Sbjct: 122 GAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDEQVLKRLLEIIKL 181
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L + ++GD+R+AI LQ FG + +++ + P +V+ +
Sbjct: 182 EDVQYTNDGLEAIIFTAEGDMRQAINNLQSTVAGFG-LVNGENVFQIVDSPHPLIVKRML 240
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
SG D + + + + +GY A ++ F V+ +++ + + + K +
Sbjct: 241 L---SGSLDESLQYLKELWVKGYSAVDIVITCFRVMKNLDEVKETVRLEMIKEIGFTHMR 297
Query: 350 LVDGADEYLQL 360
+++G +LQL
Sbjct: 298 ILEGVGTHLQL 308
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 164/277 (59%), Gaps = 9/277 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ +++++ + ++ PH+LFYGPPGTGKT+T LA A Q++ P
Sbjct: 11 PWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR +I +FA+ R + P K+IILDEAD+MT
Sbjct: 71 QQFSSMVLELNASDDRGIGIVRGQILSFAST-------RTIFKAGP-KLIILDEADAMTN 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y++ RF ICNY+ +II L SRC +FRF PL ++ + R+ I
Sbjct: 123 DAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTT 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + + L ++S GD+R+ + LQ + V + ++ L
Sbjct: 183 EGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILN 242
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVV 325
+ DF K + ++ IA+G S +L+++ ++
Sbjct: 243 WLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTII 279
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 183/320 (57%), Gaps = 16/320 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV Q E+V VL ++ PH+LFYGPPGTGKT+T +A+A +
Sbjct: 3 RESLPWVEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLLFYGPPGTGKTSTIVALARE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEA 164
++G Y VLELNASDDRGI+VVR +IK FA+ + S RG +K++ILDEA
Sbjct: 63 IYGKN-YSHMVLELNASDDRGIDVVRNQIKEFASTRQIFS---RG------FKLVILDEA 112
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL E+ + R+
Sbjct: 113 DAMTNAAQNALRRIIEKYTKNTRFCILANYSHKLTPALQSRCTRFRFQPLPEDAIKRRIA 172
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----ITSKDLISVSGVI 280
++ E L + +A+ L +S+GD+RR + LQ + G +++ + G
Sbjct: 173 NVLVHEHLRVSEDAVQALIKLSKGDMRRVLNVLQASKATLGDDESDEVSTDTIYECCGAA 232
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARI 339
P + + D++ A ++ I E G L+ + +++ + E ++ + +
Sbjct: 233 RPADLRKILKSILEEDWNTAYYTLHKIRQEQGLALIDLIEGIMEILDQYELQHEQTRINL 292
Query: 340 CKCLAEVDKCLVDGADEYLQ 359
C LA+++ + G D +Q
Sbjct: 293 CMKLADLEYAISKGGDSKIQ 312
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 184/312 (58%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + ++ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 23 PWVEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACARQLYKD 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 83 KEFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 135 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIAE 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + +G + +
Sbjct: 195 EKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETAYTCTGHPLKADIANIL 253
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 254 DWMLNQDFTSAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPPPVRIHLLIKMADIEH 312
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 313 RLAVGTSEKIQL 324
>gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
Length = 349
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 180/320 (56%), Gaps = 10/320 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L +E + R+ + +
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEK 203
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L++ + L + +QGD+R+A+ LQ FG I S+++ V P +V+ +
Sbjct: 204 ENLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVFKVCDEPHPLLVKSML 262
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C + + D A K + + + GY ++ +F V +T +++ + K +
Sbjct: 263 EHCVNANIDEAYKIIEQLWSLGYSPEDIIGNIFR-VCKTFQMAEYLKLEYIKEIGYTHMK 321
Query: 350 LVDGADEYLQLLDVASNVIR 369
+ +G + LQ+ + + R
Sbjct: 322 VAEGVNSLLQMAGLLGRLCR 341
>gi|17647857|ref|NP_523915.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|1703054|sp|P53034.1|RFC2_DROME RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40; AltName: Full=Replication
factor C subunit 4; Short=DmRfc4
gi|639708|gb|AAB60241.1| rfc40 [Drosophila melanogaster]
gi|7292439|gb|AAF47843.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|20151645|gb|AAM11182.1| LD40483p [Drosophila melanogaster]
gi|220944360|gb|ACL84723.1| RfC40-PA [synthetic construct]
gi|220954324|gb|ACL89705.1| RfC40-PA [synthetic construct]
Length = 331
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 184/331 (55%), Gaps = 18/331 (5%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PEK+ D+ + S PW+EKYRP + K++ E+ V L+ N P+++ G
Sbjct: 5 PEKTADDKR--------SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ + E LN + L + +QGD+R+ + LQ A+ FG IT
Sbjct: 169 RFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-DIT 227
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
++++ V P+++E + C + D A K + + GY +++ +F V
Sbjct: 228 AENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRI- 286
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+I + + + + ++DG + LQL
Sbjct: 287 NIDEHLKLDFIREIGITHMKIIDGINSLLQL 317
>gi|336472626|gb|EGO60786.1| hypothetical protein NEUTE1DRAFT_144139 [Neurospora tetrasperma
FGSC 2508]
gi|350294141|gb|EGZ75226.1| putative replication factor C [Neurospora tetrasperma FGSC 2509]
Length = 357
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 177/332 (53%), Gaps = 16/332 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH + G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 93 DAYKEAVLELNASDERGIEVVRQRIKGFA-------QKKVTLPPGRHKIVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA RF L++ + R+L I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTHAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGNVDAALDGLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEF 378
+++G LQL S + +C + P++F
Sbjct: 325 ILEGVQTLLQL----SGCVARLCKLNMDPKKF 352
>gi|225426826|ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 172/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L G
Sbjct: 13 PWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLGA 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 73 N-YREAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPSGSHKIVILDEADSMTT 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 125 GAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEA 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F + +++ V P V+ +
Sbjct: 185 EKVPFVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 243
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G FD A + + GY + +++ LF +++ D+++ + K
Sbjct: 244 RNVLEGKFDDACYGLKQLYDLGYSPTDIITTLFR-IIKNYDMAEYLKLEFMKETGFAHMR 302
Query: 350 LVDGADEYLQL 360
+ DG YLQL
Sbjct: 303 ICDGVGSYLQL 313
>gi|28950096|emb|CAD70859.1| probable REPLICATION FACTOR C (40 KDA SUBUNIT) [Neurospora crassa]
Length = 357
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 177/332 (53%), Gaps = 16/332 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH + G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 93 DAYKEAVLELNASDERGIEVVRQRIKGFA-------QKKVTLPPGRHKIVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA RF L++ + R+L I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTHAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGNVDAALDGLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEF 378
+++G LQL S + +C + P++F
Sbjct: 325 ILEGVQTLLQL----SGCVARLCKLNMDPKKF 352
>gi|348041239|ref|NP_001013344.2| replication factor C subunit 2 [Danio rerio]
Length = 353
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 180/320 (56%), Gaps = 10/320 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 36 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 96 AM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 147
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L +E + R+ + +
Sbjct: 148 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEK 207
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L++ + L + +QGD+R+A+ LQ FG I S+++ V P +V+ +
Sbjct: 208 ENLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVFKVCDEPHPLLVKSML 266
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C + + D A K + + + GY ++ +F V +T +++ + K +
Sbjct: 267 EHCVNANIDEAYKIIEQLWSLGYSPEDIIGNIFR-VCKTFQMAEYLKLEYIKEIGYTHMK 325
Query: 350 LVDGADEYLQLLDVASNVIR 369
+ +G + LQ+ + + R
Sbjct: 326 VAEGVNSLLQMAGLLGRLCR 345
>gi|169776925|ref|XP_001822928.1| replication factor C subunit 4 [Aspergillus oryzae RIB40]
gi|83771665|dbj|BAE61795.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874280|gb|EIT83190.1| replication factor C, subunit RFC2 [Aspergillus oryzae 3.042]
Length = 352
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 182/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 88 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKIVILDEADSMTP 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ L++ + R+ +C+
Sbjct: 141 GAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDGQVVKRLKQVCDA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFG-FVSGDNVFRVVDSPHPIKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A + +N + GY + ++S +F V +S+ + + +
Sbjct: 260 KACWEGKVDAALETLNELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
++DG LQL S I +C NM P+ F+
Sbjct: 320 ILDGVQSLLQL----SGCIAKLCKINMKPQLFE 348
>gi|257076223|ref|ZP_05570584.1| replication factor C small subunit [Ferroplasma acidarmanus fer1]
Length = 318
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 180/310 (58%), Gaps = 11/310 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP ++ DV ++ + L ++ N PH++F GP GTGKT+TA+A+A LFG
Sbjct: 5 WTEKYRPSKLSDVIGEKGNINRLNAYVKDKNIPHLIFAGPQGTGKTSTAIALAISLFGDS 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K +ELNAS+DRGI+++R IK FA + + +KII LDEAD +T D
Sbjct: 65 -WKENFMELNASNDRGIDIIRDNIKNFAKIRPSND--------LGFKIIFLDEADHLTGD 115
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME + TRF F CNY S+II P+ SRC RFKP+ E M +R+ I +E
Sbjct: 116 AQAALRRTMEMFYNTTRFIFSCNYSSKIIPPIQSRCVVLRFKPIDRESMKNRLKDIAKKE 175
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+D ++L + IS GD+R+A+ LQ A +L G +++ + +SG I + + L
Sbjct: 176 NFEIDDDSLDAIYEISDGDMRKAVNVLQ-AVKLSG-KVSATAIYEISGEINRDEYKNLIN 233
Query: 291 VCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCL 350
+ G+F+ A ++ ++ + + + + + + E I+ +Q+ I LAE + +
Sbjct: 234 MAIEGNFNDARNYLDKMLIDYGLSGIDIIKGMHSSIRGEQIAYKQKLEIIMALAEAEFRI 293
Query: 351 VDGADEYLQL 360
V+G + +Q+
Sbjct: 294 VEGGTDNIQM 303
>gi|322701219|gb|EFY92969.1| putative replication factor C [Metarhizium acridum CQMa 102]
Length = 357
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 179/331 (54%), Gaps = 12/331 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y+ VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYREAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+ + R+L I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKRLLQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGNVDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
+++G LQL + + + NM P++FQ
Sbjct: 325 ILEGVQTLLQLSGCVARLSK--INMDPKKFQ 353
>gi|451994907|gb|EMD87376.1| hypothetical protein COCHEDRAFT_1144919 [Cochliobolus
heterostrophus C5]
Length = 353
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 168/311 (54%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PHM+ G PG GKTT+ L +AHQL G
Sbjct: 30 PWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLAHQLLG- 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P K++ILDEADSMT
Sbjct: 89 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRQKLVILDEADSMTS 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 142 GAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQICEA 201
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG + ++ V P V+ +
Sbjct: 202 EDVKYSDDGIAALVFSAEGDMRQAINNLQSTFAGFG-FVNGDNVFKVVDSPHPIKVQSMI 260
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C D A + + GY ++S +F V + +S+ + K +
Sbjct: 261 KACHEQRIDDALAALKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHMR 320
Query: 350 LVDGADEYLQL 360
+++G LQL
Sbjct: 321 ILEGVQTLLQL 331
>gi|378730119|gb|EHY56578.1| replication factor C subunit 4 [Exophiala dermatitidis NIH/UT8656]
Length = 352
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 178/331 (53%), Gaps = 12/331 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + L + N PH++ G PG GKTT+ L +A L G
Sbjct: 30 PWVEKYRPVYLDDIVGNSETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARTLLG- 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 89 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKIVILDEADSMTS 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+L I
Sbjct: 142 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVQRLLQIIEA 201
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 202 EKVQYSEDGLAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDSPHPVKVQAMI 260
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A + + GY + ++S +F V +S+ + K +
Sbjct: 261 KACWEGKIDSAVDTLKELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIKEIGFTHMR 320
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM-PEEFQ 379
+++G +LQL + + R NM PE F+
Sbjct: 321 ILEGVQSFLQLSGCLAKLCR--INMKPELFE 349
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 187/334 (55%), Gaps = 22/334 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ + ++T PH+LFYGPPGTGKT+T LA+A +
Sbjct: 42 EDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP+ + VLELNASDDRGI VVR +IKTFA+ YK+IILDEAD
Sbjct: 102 IYGPKNMRQMVLELNASDDRGIEVVREQIKTFASTKQIFSMNSATVSPGAYKLIILDEAD 161
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + V
Sbjct: 162 AMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKESDIRVLVDK 221
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ------------GAARLFGSSITSKDL 273
+ EE + ++AEA L +S+GD+RRA+ LQ G ++ I +DL
Sbjct: 222 VIMEENVQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHIKGTPKMEEKDIV-RDL 280
Query: 274 ISVSGVI-------PPEVVEGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVV 325
I+ + + P ++ + + + ++ D + +N I + +G + +++ L + +
Sbjct: 281 ITETTIYDCIASPHPADISKIMNTILKTSDVKSCLQMINAIKSTQGLALADIITALSEEL 340
Query: 326 VETEDISDEQQARICKCLAEVDKCLVDGADEYLQ 359
++ D+ + LAEV+ L G E +Q
Sbjct: 341 IKV-DVPASVMITWLQGLAEVEYRLSGGGSEVIQ 373
>gi|380470252|emb|CCF47823.1| replication factor C subunit 4 [Colletotrichum higginsianum]
Length = 361
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 182/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 97 DSYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPQGRHKLVILDEADSMTS 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R++ I
Sbjct: 150 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLMQIIEA 209
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 210 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFG-FVSGDNVFKVVDSPHPIKVQAML 268
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 269 KACYEGNVDSALDSLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 328
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G LQL S + +C NM P++F+
Sbjct: 329 ILEGVQTLLQL----SGCVARLCKINMDPKKFE 357
>gi|359415519|ref|ZP_09207966.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
gi|358034122|gb|EHK02580.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
Length = 315
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 176/311 (56%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EK+RP + +V Q E+ L +E + PHMLF GPPGTGKTT A+A+A L+G E
Sbjct: 5 WTEKHRPNTLSEVVGQNEITERLEAFVEEESIPHMLFSGPPGTGKTTCAVALAKDLYGDE 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K +E NAS++RGI+VVR KIK FA R YKII LDEADS+T D
Sbjct: 65 -WKQNFMETNASEERGIDVVREKIKDFA---------RTKAINAEYKIIFLDEADSLTSD 114
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME +S RF CNY S+II+P+ SRCA FRF L E + S + + E
Sbjct: 115 AQQALRRTMEQFSDNCRFIMSCNYSSKIIDPIQSRCAVFRFNRLEEGDVKSYIQRLGESE 174
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
++ +A+ + +S GDLRR LQ AA + I +D+ SVS + P+ + +
Sbjct: 175 NFSISEDAVEAVMRVSDGDLRRVTNVLQTAA-ISTDEIEEEDVYSVSASLKPKEITEILE 233
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
S F A ++++++ E G ++S + V DISD+Q+ + + L E +
Sbjct: 234 KTISNQFIDARDQLSDLMIERGLDGQDVVSSIHREVYNL-DISDQQKLELIEALGEFEFR 292
Query: 350 LVDGADEYLQL 360
+ +GA +Q+
Sbjct: 293 ITEGASADVQI 303
>gi|315044711|ref|XP_003171731.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
gi|311344074|gb|EFR03277.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
Length = 354
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 183/335 (54%), Gaps = 18/335 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DTYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTS 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 141 GAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDSPHPVKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNI--IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
C G D+A +N + + GY A ++S +F V ++S+ + K +
Sbjct: 260 KACWEGKVDIALDTLNELWYVELGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFTH 319
Query: 348 KCLVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G +QL S I +C NM PE F+
Sbjct: 320 MRILEGLQTLVQL----SGCIAKLCKINMKPELFK 350
>gi|440632243|gb|ELR02162.1| replication factor C subunit 2/4 [Geomyces destructans 20631-21]
Length = 357
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 177/336 (52%), Gaps = 9/336 (2%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T +SS ++ +K A V PWVEKYRP + DV E + L N PH
Sbjct: 9 TGESSTATTKKVLKANGAGVTNYELPWVEKYRPVFLDDVVGNVETIERLKIIAREGNMPH 68
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
M+ G PG GKTT+ L +A QL G E YK VLELNASD+RGI+VVR +IK FA
Sbjct: 69 MIISGMPGIGKTTSVLCLARQLLG-ESYKEAVLELNASDERGIDVVRNRIKGFA------ 121
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q++ P K++ILDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL S
Sbjct: 122 -QKKVTLPQGRQKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQS 180
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA R+ L++ + R+L I E + + L+ L ++GD+R+AI Q F
Sbjct: 181 RCAILRYARLTDAQVVKRLLQIIEAENVEYSDDGLAALVFSAEGDMRQAINNCQSTWAGF 240
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
G ++ ++ V P V+ + C G D A + + + GY + ++S +F V
Sbjct: 241 G-FVSGDNVFKVVDSPHPIKVQAMLKSCYEGKVDAALESLKELWDLGYSSHDIISTMFRV 299
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+S+ + K + +++G LQL
Sbjct: 300 TKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 335
>gi|219117762|ref|XP_002179670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408723|gb|EEC48656.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 338
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 186/324 (57%), Gaps = 15/324 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP++++D+ Q+++V +TN +++ N PH+L YGPPGTGKT+T +A A +++G
Sbjct: 18 PWVEKYRPQRLEDLVSQDDIVSSITNLIDSENLPHLLLYGPPGTGKTSTIVAAAKRMYGS 77
Query: 110 E-LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADS 166
Y S LELNASD RGI+VVR +IK FA G+ Q +G K+IILDEAD+
Sbjct: 78 SSAYSSMTLELNASDARGIDVVRNEIKEFA----GTKQLFNKG------IKLIILDEADA 127
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQ ALRR +E Y+K RF +CNY+S+II L SRC +FRF PLS + + R+ +
Sbjct: 128 MTSDAQFALRRIIEKYTKNARFCLVCNYVSKIIPALQSRCTRFRFAPLSRDQIEGRLTEV 187
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
E + + + +S GD+RR + LQ A + + + SG P ++
Sbjct: 188 AEAEKCKTTQDGIDAILRLSGGDMRRVLNLLQSTA-MSAEVVDETSVYLTSGAPLPADMD 246
Query: 287 GLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ + +F A +++ + +GY + +L++L ++ E++ + ++
Sbjct: 247 QILDWLMNHNFQTACEQITAMCTMKGYALADVLAELTSKIMCLENLDSVPLGMLLDGMSN 306
Query: 346 VDKCLVDGADEYLQLLDVASNVIR 369
V+ L G DE +Q+ + +R
Sbjct: 307 VEHRLAFGPDEKIQIASLVGVFVR 330
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 145/216 (67%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E+++ ++ L PH+LFYGPPGTGKT+T LA A +L+
Sbjct: 9 PWVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILACARKLYST 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI VVR +I +FA+ + +K+IILDEAD+MT+
Sbjct: 69 TQFNSMVLELNASDDRGIGVVRNQILSFASTRTIFNK--------GFKLIILDEADAMTK 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR ME + + TRF ICNY+++II + SRC +FRF PL+ + +SSR+ +I
Sbjct: 121 DAQNALRRVMEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRLEYIIKV 180
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E LN+ + L+ L +++ GD+R+A+ LQ ++ +
Sbjct: 181 EQLNVTEDGLNALVTLANGDMRKALNILQSSSMAYN 216
>gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 180/321 (56%), Gaps = 11/321 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q+ PWVEKYRP ++ DV E + + ++ PH+ F+GPPGTGKTTTA+AI+HQ
Sbjct: 4 QNVLPWVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAISHQ 63
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+G + S VLELNASD+RGI+ VR +IK FA+ G P K+IILDE+D
Sbjct: 64 LYGNDTSMS-VLELNASDERGIDTVRMRIKDFASSRSLFG--------PKIKLIILDESD 114
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRR ME ++ RF ICNY ++I L SRC +FRF+PL +E + + H
Sbjct: 115 AMTGAAQAALRRIMEQFTSNVRFILICNYPEKLIPALRSRCTEFRFQPLPDEDAAKFLRH 174
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I + E LN+D L L + GDLRR+I +Q + IT ++ SG PE +
Sbjct: 175 IADAEKLNMDEGGLKALLKLGIGDLRRSINLMQTTSMSNTKDITEANVYRCSGYPLPEDM 234
Query: 286 EGLFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ D A +N+ + G ++ +L VV E A + + LA
Sbjct: 235 ARTLEQLINKPLDEALNTLNDQVFNNGLSLLDVIRELHSQVVLME-FPPLVLANLIERLA 293
Query: 345 EVDKCLVDGADEYLQLLDVAS 365
++++CL +G+ E +Q +A+
Sbjct: 294 QIERCLAEGSPERVQSAAIAA 314
>gi|195491632|ref|XP_002093645.1| GE20646 [Drosophila yakuba]
gi|194179746|gb|EDW93357.1| GE20646 [Drosophila yakuba]
Length = 331
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 177/315 (56%), Gaps = 10/315 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S PW+EKYRP + K++ E+ V L+ N P+++ GPPG GKTTT +A
Sbjct: 13 RSHLPWIEKYRPAKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARI 72
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G + YK VLELNAS++RGI+VVR KIK FA Q++ P +KI+ILDEAD
Sbjct: 73 LLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPRGRHKIVILDEAD 124
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA RF LS+ + ++++
Sbjct: 125 SMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIE 184
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ E LN + L + +QGD+R+ + LQ A+ FG IT++++ V P+++
Sbjct: 185 VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-DITAENVFKVCDEPHPKLL 243
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
E + C + D A K + + GY ++ +F V +I + + + +
Sbjct: 244 EEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIGNIFRVCKRI-NIDEHMKLDFIREIGI 302
Query: 346 VDKCLVDGADEYLQL 360
+VDG + LQL
Sbjct: 303 THMKIVDGINSLLQL 317
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 185/317 (58%), Gaps = 10/317 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
QS WVEKYRP+++ ++ +E+ L + PH+LFYGPPGTGKTT LA A +
Sbjct: 14 QSETIWVEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLLFYGPPGTGKTTAILACARE 73
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
+FG + +K+ VLELNASDDRGI+VVR +IKTFA+ + G K++ILDEAD
Sbjct: 74 MFGAQ-FKTMVLELNASDDRGIDVVREQIKTFASTRHIYALKAG------IKLVILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRR ME Y+ RF ICNY ++II + SRC +FRF+P+ M R+ +
Sbjct: 127 AMTSAAQAALRRIMEKYTSNIRFCLICNYANKIIPAIQSRCTRFRFQPVPVAQMIQRLEY 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP-PEV 284
I + EG+ +D A L+ I+QGD+RRAI +Q S+ ++D + + +P P
Sbjct: 187 IADREGVPVDRAAFDALARIAQGDMRRAIYLMQSTFLASASARVTEDGVYANAGMPSPAD 246
Query: 285 VEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+ + + F A +++ I +G+ ++ L + V+ E +S + +A + + L
Sbjct: 247 LHAIAQILLYDPFAQAFCKISEIKKGKGFALLDMIHGLHEAVMLME-LSPKVKAFLFEQL 305
Query: 344 AEVDKCLVDGADEYLQL 360
A ++ LV E +QL
Sbjct: 306 ANMEWRLVSATSERIQL 322
>gi|116206666|ref|XP_001229142.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183223|gb|EAQ90691.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 356
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 179/333 (53%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + L N PH++ G PG GKTT+ L ++ QL G
Sbjct: 33 PWVEKYRPVFLDDIVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLSRQLLG- 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 92 DSYKEAVLELNASDERGIEVVRQRIKGFA-------QKKVTLPQGRHKIVILDEADSMTS 144
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+L I
Sbjct: 145 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEA 204
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + E L+ L ++GD+R+AI LQ FG +++ ++ V P V+ +
Sbjct: 205 EKVEYNDEGLAALVFSAEGDMRQAINNLQSTFAGFG-FVSADNVFKVVDSPHPIKVQAML 263
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 264 KACYEGNIDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMK 323
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+++G LQL S + +C + P +F+
Sbjct: 324 ILEGVQTLLQL----SGCVARLCKLNMDPAKFE 352
>gi|366988087|ref|XP_003673810.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
gi|342299673|emb|CCC67429.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
Length = 321
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 177/324 (54%), Gaps = 11/324 (3%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+L PWVEKYRP+ + D+ EE + L + N PHM+ G PG GKTT+ L +A
Sbjct: 5 ILTLELPWVEKYRPRVLDDIVGNEETILRLKQIAQDGNMPHMIISGLPGIGKTTSVLCLA 64
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
H+L G + Y VLELNASDDRGI VVR +IK FA Q++ P +KIIILDE
Sbjct: 65 HELLGDD-YSKAVLELNASDDRGIEVVRNQIKQFA-------QKKSLLPPGKHKIIILDE 116
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+
Sbjct: 117 ADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRL 176
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPE 283
L I E + + L + ++GD+R+AI LQ G + ++ + P
Sbjct: 177 LQIIKAEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG-LVNGDNVFKIVDSPHPL 235
Query: 284 VVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
VV + + + D L + ++ +GY A +++ F V DI + ++ + K +
Sbjct: 236 VVRKML-LAPTLDESLTHLR-KDLWGKGYSAVDIVTTSFRVTKSLFDIRESKRLEMIKEI 293
Query: 344 AEVDKCLVDGADEYLQLLDVASNV 367
+++G YLQL + + +
Sbjct: 294 GITHMRILEGVSTYLQLASMLAKI 317
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 141/217 (64%), Gaps = 12/217 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPKQ+ D+ ++++ + + PH+LFYGPPGTGKT+T LA A +L+ P
Sbjct: 8 PWVEKYRPKQLDDLISHQDIISTIRKFINENRLPHLLFYGPPGTGKTSTILACAKELYTP 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGINVVR +I +FA+ SG +K+IILDEAD+M
Sbjct: 68 QQFNSMVLELNASDDRGINVVRNQIMSFASTRSIFKSG----------FKLIILDEADAM 117
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ RF ICNY+S+II + SRC +FRF PL + + R+ ++
Sbjct: 118 TNDAQNALRRVIEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYVI 177
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
EE + + + L S++ GD+RR I LQ + F
Sbjct: 178 EEEKIKVTEDGRQALLSLAHGDMRRVINILQSTSMAF 214
>gi|388504120|gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 173/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 16 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSMT
Sbjct: 76 N-YREAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTS 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 128 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQA 187
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+ + LQ F + ++ V P V+ +
Sbjct: 188 EKVPYVPEGLEAIIFTADGDMRQGLNNLQATFSGF-QFVNQANVFKVCDQPHPLHVKNMV 246
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G+FD A + + GY + +++ LF ++++ D+++ + K
Sbjct: 247 RNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFR-IIKSYDMAEYLKLEFMKETGFAHMR 305
Query: 350 LVDGADEYLQL 360
+ DG YLQ+
Sbjct: 306 ICDGVGSYLQM 316
>gi|340371349|ref|XP_003384208.1| PREDICTED: replication factor C subunit 2-like [Amphimedon
queenslandica]
Length = 346
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 180/311 (57%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ ++ E+ V+ L + N P+++ GPPGTGKTT+ L +A L G
Sbjct: 33 PWVEKYRPQKLSEIVGNEDTVKRLEVFSKEGNVPNIIIAGPPGTGKTTSILCLARTLLGA 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR +IK FA ++ P +KI+ILDEADSM++
Sbjct: 93 SM-KDAVLELNASNDRGIDVVRNRIKMFA-------HQKVTLPPGRHKIVILDEADSMSD 144
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ LS+ + R+L +C++
Sbjct: 145 GAQQALRRTMEIYSKTTRFALACNDSEKIIEPIQSRCAMLRYSRLSDAQILERLLEVCDK 204
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L + L + +QGD+R+A+ LQ F S I S+++ V P +++ +
Sbjct: 205 ENLIRTDDGLEAIIFTAQGDMRQALNNLQSTNDGF-SFINSENVFKVCDEPHPLLIKEML 263
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C + D D A + + +GY A +++ +F V +T +S+ + K +
Sbjct: 264 THCNNSDIDSAFLILMTLWDKGYSAHDIITSIFR-VCKTHSMSEYLKLEYLKEVGYTHMR 322
Query: 350 LVDGADEYLQL 360
++ G D LQL
Sbjct: 323 IIKGVDSLLQL 333
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 156/240 (65%), Gaps = 9/240 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP+ + DVA ++V + + PH+L YGPPGTGKT+T LA+A +++
Sbjct: 35 SSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIY 94
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI VVR +I+ FA A ++ G + P K+++LDEAD+
Sbjct: 95 GSQ-YGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAK------PAVKLVLLDEADA 147
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ ALRR +E Y++ TRF ICN++++II L SRC +FRF PL +S R+ HI
Sbjct: 148 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLRHI 207
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
EGL++D LS L +S GD+R+++ LQ + + IT + + +G P+ +E
Sbjct: 208 IKSEGLDVDEGGLSALVRLSNGDMRKSLNILQ-STHMASQQITEEAVYLCTGNPMPKDIE 266
>gi|255955413|ref|XP_002568459.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590170|emb|CAP96342.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 392
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 183/325 (56%), Gaps = 27/325 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +ET PH+L YGPPGTGKT+T LA+A +
Sbjct: 37 QDNLPWVEKYRPSSLDDVSGHQDILATINRFVETNRLPHLLLYGPPGTGKTSTILALARR 96
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + Q G P +K+IILD
Sbjct: 97 IYGTKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILD 156
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + +
Sbjct: 157 EADAMTSTAQMALRRIMERYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEVDIRTL 216
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
V + +EG+ + +A+ +L ++S+GD+RRA+ LQ F SSI P
Sbjct: 217 VDQVIEKEGVKIQPDAVDSLVTLSKGDMRRALNVLQAC---FASSI-------------P 260
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISD----EQQAR 338
+ R + N + + IA +P+ + ++ ++ T D++ Q +
Sbjct: 261 LPMRDAPKAPRPEPETVTNATIYDCIAAPHPSD--IQEIMTTILSTSDVTSCLNTVQTLK 318
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDV 363
K LA D ++ + LQ LDV
Sbjct: 319 TTKGLALAD--ILSALADQLQQLDV 341
>gi|400600989|gb|EJP68657.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 355
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 180/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A +L G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARELLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K+IILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLIILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNMSNKIIEPLQSRCAILRYAKLTDAQVVKRLMQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTFSGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGNIDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEYSKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G LQL S + +C NM P+ FQ
Sbjct: 325 ILEGVQTLLQL----SGCVARLCKINMDPKRFQ 353
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 188/317 (59%), Gaps = 21/317 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +++++ +++ + ++ PH+LFYGPPGTGKT+T LA+A QL+ P
Sbjct: 11 PWVEKYRPNKLEELISHADILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAKQLYSP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR + +FA+ SG +KI+ILDEAD+M
Sbjct: 71 KEFNSMVLELNASDDRGIGIVRGPVLSFASTRTIFKSG----------FKIVILDEADAM 120
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ TRF ICNY+S+II + SRC +FRF PL + M R+ H+
Sbjct: 121 TNDAQNALRRVIEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDNQQMVPRLEHVI 180
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E +++ + ++ L +++ GD+R+++ LQ + + + ++ + G E +
Sbjct: 181 QQERVDVTEDGMNALVTLANGDMRKSLNILQSTSMAY-DVVNEVNVYTCVGHPLKEDISN 239
Query: 288 LFAVCRSGDFDLANKEVNNII----AEGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+ + DF A NNI+ +G +L+++ + + E + + + ++ +
Sbjct: 240 IVNWMLNEDFTTA---YNNILDLKTLKGLALQDILTEVHKFIHKVE-LPTKVRIKLLDKM 295
Query: 344 AEVDKCLVDGADEYLQL 360
AE++ L G +E +QL
Sbjct: 296 AEIEYNLTAGTNEKIQL 312
>gi|357165331|ref|XP_003580347.1| PREDICTED: replication factor C subunit 2-like [Brachypodium
distachyon]
Length = 333
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 173/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH++ GP
Sbjct: 17 PWVEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 77 S-YREGVLELNASDDRGLDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTT 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 129 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAA 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F + +++ V P V+ +
Sbjct: 189 EKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGF-RFVNQENVFKVCDQPHPLHVKNMV 247
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G FD A + + GY + +++ LF VV+ D+++ + + K
Sbjct: 248 KNVLDGKFDEACSGLKQLYDLGYSPTDIITTLFR-VVKNYDMAEYLKLELLKETGFAHMR 306
Query: 350 LVDGADEYLQL 360
+ DG +LQL
Sbjct: 307 ICDGVGSFLQL 317
>gi|336266754|ref|XP_003348144.1| hypothetical protein SMAC_03989 [Sordaria macrospora k-hell]
gi|380091080|emb|CCC11286.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 357
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 178/332 (53%), Gaps = 16/332 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 93 DAYKEAVLELNASDERGIEVVRQRIKGFA-------QKKVTLPPGRHKIVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+L I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTHAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGNVDAALDGLRELWNLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQLLDVASNVIRAVCNM---PEEF 378
+++G LQL S + +C + P++F
Sbjct: 325 ILEGVQTLLQL----SGCVARLCKLNMDPKKF 352
>gi|440797689|gb|ELR18770.1| DNA replication factor C complex subunit 2, putative [Acanthamoeba
castellanii str. Neff]
Length = 346
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 176/312 (56%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK +KD+ E V L N P+++ GPPGTGKTT+ L +AH L GP
Sbjct: 23 PWVEKYRPKDIKDIVGNVETVSRLQIIASEGNMPNLILAGPPGTGKTTSILCLAHALLGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRGI+VVR KIK FA Q++ K++ILDEADSMT
Sbjct: 83 N-YREGVLELNASDDRGIDVVRNKIKMFA-------QKKVNLAPGRQKVVILDEADSMTS 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ L +E + R++ +
Sbjct: 135 AAQQALRRTMEIYSNTTRFALACNVSSKIIEPIQSRCAILRYTRLGDEQVLKRLMEVIKA 194
Query: 230 EG-LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EG + + L + ++GD+R+A+ LQ +G + +++ V P +++ +
Sbjct: 195 EGNIPHTDDGLEAVLFTAEGDMRQALNNLQSTHAGYG-FVNRENVFKVCDQPHPLLIKSI 253
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
C +G+ D A ++++++ GY A ++ +F V++T I + + + +
Sbjct: 254 MNECEAGELDTALQQLSSLWGLGYSAVDIIGTMFR-VLKTMSIQEYLKLEFIREIGFAHM 312
Query: 349 CLVDGADEYLQL 360
V G + LQL
Sbjct: 313 RAVKGMNSLLQL 324
>gi|310831184|ref|YP_003969827.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
gi|309386368|gb|ADO67228.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
Length = 314
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 180/306 (58%), Gaps = 16/306 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ ++ HQ E + V+ N ++ N PH++FYGPPGTGKT+T LA+ +++F E
Sbjct: 7 WNEKYRPKKLNEIIHQNETILVIKNLIDNHNLPHLIFYGPPGTGKTSTILAVCNEIFPDE 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY-KIIILDEADSMTE 169
+ +R E NAS+DRGI +R KIK S Q+ YP P+ KIIILDE D++T
Sbjct: 67 IKYNRCFEFNASNDRGIKFIREKIKKI------SNQKIKNYPNTPHIKIIILDEVDTLTT 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
D+Q ALRR ME S TRF ICNY +++IEP+ SRCA+FRFKP+ ++M ++ I +
Sbjct: 121 DSQYALRRIMENSSSNTRFCLICNYPNKLIEPIISRCAQFRFKPIPTKIMEEKLTDILKQ 180
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + + + S GDLR +I+YLQ + ++ L + G+I + + F
Sbjct: 181 EKIKNKKDITNLIIENSYGDLRLSISYLQRYYKY------NESLNKIYGIIGTKELLS-F 233
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ + +K + I + Y + + L ++V + +I D + + + L+E+D
Sbjct: 234 IQLYNNEIKFWDK-IKEFIQKKYHLAFQIKTLLELVSKL-NIDDIIKINLIEDLSEMDYY 291
Query: 350 LVDGAD 355
+++G +
Sbjct: 292 IINGVN 297
>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 333
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 173/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 16 PWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSMT
Sbjct: 76 N-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTS 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 128 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLIIVVQA 187
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F + +++ V P V+ +
Sbjct: 188 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 246
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G +D A + + GY + +++ LF +++ D+++ + K
Sbjct: 247 RHVMEGKYDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYDMAEYLKLEFMKETGFAHMR 305
Query: 350 LVDGADEYLQL 360
+ DG YLQL
Sbjct: 306 ICDGVGSYLQL 316
>gi|260820974|ref|XP_002605809.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
gi|229291144|gb|EEN61819.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
Length = 362
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 185/340 (54%), Gaps = 14/340 (4%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQ----PWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
T + +P+K +V + +S PWVEKYRP ++ DV E+ V L +
Sbjct: 14 TNKEAPKKDSSKVDKAKPGTSGTSSGYELPWVEKYRPAKLCDVVGNEDTVSRLEVFSQQG 73
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
N P+++ G PG GKTT+ L +A L GP YK VLELNAS+DRGI+VVR KIK FA
Sbjct: 74 NMPNIIIAGSPGIGKTTSILCLARTLLGPA-YKDAVLELNASNDRGIDVVRNKIKMFA-- 130
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
Q++ P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN +IIE
Sbjct: 131 -----QQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE 185
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
+ SRCA R+ L++ + R+L++C +E + + L + +QGD+R+A+ LQ
Sbjct: 186 AIQSRCAVLRYSKLTDNQILERLLYVCEKENVEHTDDGLEAVIFTAQGDMRQALNNLQST 245
Query: 261 ARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQ 320
FG + S+++ V P +V+ + C + D A K + ++ GY ++
Sbjct: 246 WSGFG-YVNSENVFKVCDEPHPLLVKEMLGHCVDANIDEAYKILKHLWKMGYSPEDIIGN 304
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+F V +T + + + K + +V G D LQL
Sbjct: 305 IFR-VCKTYQMHEYLKLEFIKEIGYTHMRIVQGVDSLLQL 343
>gi|302909278|ref|XP_003050037.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730974|gb|EEU44324.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 354
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 180/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPIFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLMQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A + + GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGNVDSALDTLRELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G LQL S + +C NM P+ F+
Sbjct: 325 VLEGVQTLLQL----SGCVARLCKINMDPKRFR 353
>gi|432959658|ref|XP_004086351.1| PREDICTED: replication factor C subunit 2-like [Oryzias latipes]
Length = 355
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 177/311 (56%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N P+++ GPPGTGKTT+ L +A L G
Sbjct: 38 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGS 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 98 AM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR ME YSK TRF CN +IIEP+ SRCA R+ L++ + SR+ + +
Sbjct: 150 GAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYAKLTDGQILSRLQEVIEK 209
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L++ + L + SQGD+R+A+ LQ FG I S+++ V P +V+ +
Sbjct: 210 ERLSVSDDGLEAVIFTSQGDMRQALNNLQSTHSGFG-YINSENVFKVCDEPHPLLVKSML 268
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A K V ++ GY ++ +F V +T +++ + K + +
Sbjct: 269 GHCVDGNIDEAYKVVEHLWGLGYSPEDIIGNIFR-VCKTYQMAEYLKLEFIKEIGYTNMR 327
Query: 350 LVDGADEYLQL 360
+ +G + LQ+
Sbjct: 328 VAEGVNSLLQM 338
>gi|242823966|ref|XP_002488166.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713087|gb|EED12512.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 815
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 179/332 (53%), Gaps = 16/332 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + L + N PH++ G PG GKTT+ L +A Q+ G
Sbjct: 29 PWVEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQMLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 NAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRHKLVILDEADSMTP 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+ IC
Sbjct: 141 GAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDGQVVKRLSQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EKVEFSEDGIAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDSPHPIKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A +N + GY + ++S +F V + +S+ + K +
Sbjct: 260 KACWEGKVDSALDILNELWNLGYSSHDIISTMFRVTKTIQTLSEHAKLEFIKEIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEF 378
++DG LQL S + +C NM PE F
Sbjct: 320 ILDGVGTLLQL----SGCVAKLCKINMKPELF 347
>gi|389593215|ref|XP_003721861.1| putative replication factor C, subunit 4 [Leishmania major strain
Friedlin]
gi|321438363|emb|CBZ12115.1| putative replication factor C, subunit 4 [Leishmania major strain
Friedlin]
Length = 360
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 189/354 (53%), Gaps = 29/354 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-- 107
PWVEKYRP+ V D+ E + L + N P++L GPPGTGKTT+ L +A L
Sbjct: 7 PWVEKYRPQTVVDIVGNTEAISRLQVIAKQGNLPNLLLCGPPGTGKTTSMLCLARDLLLQ 66
Query: 108 --------------GPELYKSRVLELNASDDRGINVVRTKIKTFAAV---------AVGS 144
++ K VLELNASDDRG++VVR KIK FA + G
Sbjct: 67 STDTGSAGASPGGAMKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKFFSTGE 126
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
G + + +KI++LDEADSMT AQ ALRRTME +S TRF F CN SRIIEP+ S
Sbjct: 127 GVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQS 186
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA RFK LS+ + R++++ E ++ + L L +++GDLR+A+ LQ +
Sbjct: 187 RCAVVRFKKLSDADILKRLVYVIQHENVSYTDDGLEALLYLAEGDLRQALNALQATHTGY 246
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSG-DFDLANKEVNNIIAEGYPASLLLSQLFD 323
G + + ++ V P +VE + C + + + A++E+N ++ GY +++ F
Sbjct: 247 G-LVNADNVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNRLLNRGYAPVDVIATFFK 305
Query: 324 VVVETEDI--SDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMP 375
V + S+ QQ + K + E + +G LQL + + +I A+ N P
Sbjct: 306 VAQTHARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARMIAALENTP 359
>gi|194866271|ref|XP_001971841.1| GG14218 [Drosophila erecta]
gi|190653624|gb|EDV50867.1| GG14218 [Drosophila erecta]
Length = 331
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 178/315 (56%), Gaps = 10/315 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S PW+EKYRP + K++ E+ V L+ N P+++ GPPG GKTTT +A
Sbjct: 13 RSHLPWIEKYRPAKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARI 72
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G + YK VLELNAS++RGI+VVR KIK FA Q++ P +KI+ILDEAD
Sbjct: 73 LLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPRGRHKIVILDEAD 124
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA RF LS+ + ++++
Sbjct: 125 SMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIE 184
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ E LN + L + +QGD+R+ + LQ A+ FG IT++++ V P+++
Sbjct: 185 VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-DITAENVFKVCDEPHPKLL 243
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
E + C + D A K + + GY +++ +F V +I + + + +
Sbjct: 244 EEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRI-NIDEHLKLDFIREIGI 302
Query: 346 VDKCLVDGADEYLQL 360
++DG + LQL
Sbjct: 303 THMKIIDGINSLLQL 317
>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 318
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 185/321 (57%), Gaps = 16/321 (4%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
+E++RP ++ D+ QE V L + + PH+LFYGPPG GKTT ALA+A +L+G +
Sbjct: 1 MERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYG-DS 59
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
++S VLELNASD+RGI+V+R K+K FA + +G P P +K++ILDEAD+MT DA
Sbjct: 60 WRSSVLELNASDERGIDVIREKVKEFAR-TIPTG------PVP-FKLVILDEADNMTSDA 111
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
Q ALRR ME Y+ TRF + NYIS IIEP+ SRCA FRF PL +E + R+ I E G
Sbjct: 112 QQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETG 171
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAV 291
+ + + L + +SQGD+R+AI LQ + + + G I P+ V L
Sbjct: 172 VEVTEDGLEAIWEVSQGDMRKAINTLQ-TTTTTNKKVDENAVYQLFGGINPQEVRDLIYE 230
Query: 292 CRSGDFDLANKEVNNIIAEG-----YPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+GDF A + ++I + Y LL ++ V + + + + RI +A
Sbjct: 231 ALNGDFGKAIMGLKSMIRDRGVDPIYIIRLLHREVTSTVSKI-NAPEYLKPRIIYSIAMR 289
Query: 347 DKCLVDGADEYLQLLDVASNV 367
++ G+D+ Q++ + + +
Sbjct: 290 HHAILRGSDDLTQVIGLLAEI 310
>gi|425772715|gb|EKV11110.1| hypothetical protein PDIG_52530 [Penicillium digitatum PHI26]
gi|425775221|gb|EKV13502.1| hypothetical protein PDIP_47760 [Penicillium digitatum Pd1]
Length = 393
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 147/226 (65%), Gaps = 6/226 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +ET PH+L YGPPGTGKT+T LA+A +
Sbjct: 38 QDNLPWVEKYRPSSLDDVSGHQDILATINRFVETNRLPHLLLYGPPGTGKTSTILALARR 97
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + Q G P +K+IILD
Sbjct: 98 IYGTKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILD 157
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + +
Sbjct: 158 EADAMTSTAQMALRRIMERYTSNTRFCVIANYTHKLSPALLSRCTRFRFSPLKEVDIRTL 217
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268
V + EG+ + +A+ +L ++S+GD+RRA+ LQ F SSI
Sbjct: 218 VDKVIENEGVRMQPDAVDSLVTLSKGDMRRALNVLQAC---FASSI 260
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 113/319 (35%), Positives = 189/319 (59%), Gaps = 11/319 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 8 PLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLAS 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + + VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 AKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT DAQNALRR +E Y++ TRF ICNY+S+II L SRC +FRF PLS++ M R
Sbjct: 120 EADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPR 179
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ + +E +++ + + + ++S GD+RR++ LQ + +G +T ++ + +G
Sbjct: 180 LEFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDNVYTCTGHPLR 238
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
+ + + DF A ++ + +G +L+++ +++ D + +
Sbjct: 239 SDIANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVH-LLIHRVDFPPAIRMGLLI 297
Query: 342 CLAEVDKCLVDGADEYLQL 360
LA+++ L G E +QL
Sbjct: 298 KLADIEYRLASGTSEKIQL 316
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 155/240 (64%), Gaps = 9/240 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 38 AAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 97
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI+VVR +I+ FA A ++ G R P K+++LDEAD+
Sbjct: 98 GSQ-YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR------PSVKLVLLDEADA 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ ALRR +E Y++ TRF ICN++++II L SRC +FRF PL + R+ HI
Sbjct: 151 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHI 210
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
EGL++D L+ L +S GD+R+A+ LQ + + IT + + +G P+ +E
Sbjct: 211 IKSEGLSVDDGGLTALVRLSNGDMRKALNILQ-STHMASQQITEEAVYLCTGNPMPKDIE 269
>gi|452819401|gb|EME26461.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 330
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 179/312 (57%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRPK DV Q++++ + + + + PHMLFYGPPGTGKT+T LA A ++G
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+KS VLELNASDDRGI+VVR +IK F S QR K++ILDEAD+MT
Sbjct: 70 -FKSMVLELNASDDRGIDVVRNEIKDFC-----STQR---IFATGVKLVILDEADAMTSA 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF ICNY ++II L SRC +FRF PL EE + R+ I E
Sbjct: 121 AQMALRRIMEKYTSSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAERE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF- 289
G+ + +AL T+ +SQGD+R I LQ + L +T + +G E +E +
Sbjct: 181 GVVFEKDALETIIQLSQGDMRSCINILQ-STFLSSGKVTCSTVYENTGNPSNEEMEQIMD 239
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF +V + AE G+ +L Q+ ++ T ++S +A + + LA+++
Sbjct: 240 WLNEEDDFSSCYDKVKKMKAERGFALIDILRQIHKRLL-TRNMSRRAKAYLLEKLADIEH 298
Query: 349 CLVDGADEYLQL 360
G E L L
Sbjct: 299 QFAFGGSELLNL 310
>gi|452824858|gb|EME31858.1| replication factor C subunit [Galdieria sulphuraria]
Length = 330
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 179/312 (57%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRPK DV Q++++ + + + + PHMLFYGPPGTGKT+T LA A ++G
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+KS VLELNASDDRGI+VVR +IK F S QR K++ILDEAD+MT
Sbjct: 70 -FKSMVLELNASDDRGIDVVRNEIKDFC-----STQR---IFATGVKLVILDEADAMTSA 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF ICNY ++II L SRC +FRF PL EE + R+ I E
Sbjct: 121 AQMALRRIMEKYTTSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAERE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF- 289
G+ + +AL T+ +SQGD+R I LQ + L +T + +G E +E +
Sbjct: 181 GVVFEKDALETIIQLSQGDMRSCINILQ-STFLSSGKVTCSTVYENTGNPSNEEMEQIMD 239
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF +V + AE G+ +L Q+ ++ T ++S +A + + LA+++
Sbjct: 240 WLNEEDDFSSCYDKVKKMKAERGFALIDILRQIHKRLL-TRNMSRRAKAYLLEKLADIEH 298
Query: 349 CLVDGADEYLQL 360
G E L L
Sbjct: 299 QFAFGGSELLNL 310
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 155/240 (64%), Gaps = 9/240 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 38 AAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 97
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI+VVR +I+ FA A ++ G R P K+++LDEAD+
Sbjct: 98 GSQ-YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR------PSVKLVLLDEADA 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ ALRR +E Y++ TRF ICN++++II L SRC +FRF PL + R+ HI
Sbjct: 151 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHI 210
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
EGL++D L+ L +S GD+R+A+ LQ + + IT + + +G P+ +E
Sbjct: 211 IKSEGLSVDDGGLTALVRLSNGDMRKALNILQ-STHMASQQITEEAVYLCTGNPMPKDIE 269
>gi|367036204|ref|XP_003667384.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
gi|347014657|gb|AEO62139.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
Length = 389
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 122/351 (34%), Positives = 196/351 (55%), Gaps = 30/351 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPATLADVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ ++ + R G +K+IIL
Sbjct: 100 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMSASATRSGIAN--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 158 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRG 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA-----------------ARLF 264
+ + EE + + EA +L +S+GD+RRA+ LQ +
Sbjct: 218 LIDKVIEEENVKIMPEATDSLVRLSKGDMRRALNVLQACHASSTPLQPREGPKIAEKDIV 277
Query: 265 GSSITSKDLISVSGVIPPEVVEGLF-AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLF 322
+IT++ + + PP+ ++ + + + D +N + +A+G + +++ L
Sbjct: 278 RETITTETIYNCVAAPPPDAIKKILNTLLSTSDVTSCLSTINTLKVAQGLALADIITALS 337
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373
+ V++ E + + LAE++ + GA+E +Q S V+ A+ N
Sbjct: 338 EEVMKLE-VKPQVMITWLDTLAEIEHRVSSGANEAIQ----TSAVVGAIRN 383
>gi|452846354|gb|EME48287.1| hypothetical protein DOTSEDRAFT_147627 [Dothistroma septosporum
NZE10]
Length = 352
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 168/311 (54%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGA 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR +IK FA Q++ P KI+ILDEADSMT
Sbjct: 89 A-YKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRQKIVILDEADSMTS 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+ I
Sbjct: 141 GAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKRLYQIAKA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + ++ L ++GD+R+AI LQ FG + ++ V P V+G+
Sbjct: 201 EGVEYSDDGIAALVFSAEGDMRQAINNLQSTHAGFG-FVNGDNVFRVVDSPHPIKVQGMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ D A + + GY + ++S +F V +S+ + + +
Sbjct: 260 RSCQDSKVDEALDSLKELWDLGYSSHDIISTMFKVTKSIPSLSEHTKLEFIREIGFTHMR 319
Query: 350 LVDGADEYLQL 360
+++G YLQL
Sbjct: 320 ILEGMQTYLQL 330
>gi|449300715|gb|EMC96727.1| hypothetical protein BAUCODRAFT_34119 [Baudoinia compniacensis UAMH
10762]
Length = 350
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 170/311 (54%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 28 PWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHLIISGMPGIGKTTSILCLARQLLG- 86
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 87 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKIVILDEADSMTS 139
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R+ IC
Sbjct: 140 GAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLYQICKA 199
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 200 ENVEYSDDGIAALVFSAEGDMRQAINNLQSTFAGFG-FVSGDNVFRVVDSPHPVKVQAML 258
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+ D A + + GY + +++ +F V +S+ + + +
Sbjct: 259 KSCQEQKVDEALDSLQELWGLGYSSHDIITTMFRVTKTLPSLSEHSKLEFIREIGFTHMR 318
Query: 350 LVDGADEYLQL 360
+++G YLQL
Sbjct: 319 ILEGVQTYLQL 329
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 159/262 (60%), Gaps = 13/262 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + DV Q+ VV + L PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 9 PWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGS 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 69 N-YRNMVLELNASDDRGIDVVRNQIKEFAST-------RQIF-SKGFKLIILDEADAMTN 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PLSE+ + R+ ++ +
Sbjct: 120 AAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVK 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT---SKDLI-SVSGVIPPEVV 285
E L LD +A + L +S GD+RRA+ LQ A + T ++DLI G P +
Sbjct: 180 EHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDL 239
Query: 286 EGLFAVCRSGDFDLANKEVNNI 307
E + D+ VN I
Sbjct: 240 ETMLESILKDDWTTTTYTVNKI 261
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 27/333 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ +++ + + PH+LFYGPPGTGKT+T LA+A QL+
Sbjct: 12 PWVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQLYPD 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR I +FA+ SG +K++ILDEAD+M
Sbjct: 72 KQFGSMVLELNASDDRGIGIVRGDILSFASTRTIFKSG----------FKLVILDEADAM 121
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQNALRR ME +++ TRF ICNY+++II L SRC +FRF PLS + M R+ H+
Sbjct: 122 TQDAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVI 181
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISV-SGVIPPEVVE 286
E +N+ + +L ++QGD+R+ + LQ + + S+ ++D + + +G P +
Sbjct: 182 ESERVNVTDDGRKSLLRLAQGDMRKVLNILQSTSMAY--SVVNEDHVYLCTGQPQPTDIG 239
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFD---VVVETEDISDEQQARICKCL 343
+ + DF A NI+ L L + + V D + + + +
Sbjct: 240 NIVDWMLNKDFTTA---YTNILKLKTLKGLALQDILEETHSYVHRVDFPAKIRIHLLDKM 296
Query: 344 AEVDKCLVDGADEYLQL------LDVASNVIRA 370
AEV+ L G E +QL VA ++I A
Sbjct: 297 AEVEYRLASGTSEKIQLGSMIAAFQVARDMIEA 329
>gi|194750805|ref|XP_001957720.1| GF23886 [Drosophila ananassae]
gi|190625002|gb|EDV40526.1| GF23886 [Drosophila ananassae]
Length = 331
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 177/311 (56%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP + K++ E+ V L+ N P+++ GPPG GKTTT +A L G
Sbjct: 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG- 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNAS++RGI+VVR KIK FA Q++ P +KI+ILDEADSMTE
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPRGRHKIVILDEADSMTE 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN +IIEP+ SRCA RF LS+ + +++L +
Sbjct: 129 GAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDSQVLAKLLEVSKW 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L+ + L + +QGD+R+A+ LQ A+ FG IT +++ V P+++E +
Sbjct: 189 EKLHYTDDGLEAIVFTAQGDMRQALNNLQSTAQGFG-DITMENVFKVCDEPHPKLLEEMI 247
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C + D A K ++ + GY ++ +F V +I ++ + + +
Sbjct: 248 HHCAANDIHKAYKILSKLWKLGYSPEDIIGNIFRVCKRV-NIDEQLKLDFIREIGITHMK 306
Query: 350 LVDGADEYLQL 360
+VDG + LQL
Sbjct: 307 IVDGINSLLQL 317
>gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 173/313 (55%), Gaps = 10/313 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L
Sbjct: 15 NNPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 74
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
GP YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSM
Sbjct: 75 GPN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 126
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRT+E YS TRF CN S+IIEP+ SRCA RF LS++ + R+L +
Sbjct: 127 TSGAQQALRRTIEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILGRLLVVV 186
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
E + E L + + GD+R+A+ LQ F + +++ V P V+
Sbjct: 187 EAENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF-RFVNQENVFKVCDQPHPLHVKN 245
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ FD A + + GY + +++ LF +++ D+++ + K
Sbjct: 246 IVRNVLESKFDDACHGLKQLYDLGYSPTDIITTLFR-IIKNYDMAEYLKLEFMKETGFAH 304
Query: 348 KCLVDGADEYLQL 360
+ DG YLQL
Sbjct: 305 MRICDGVGSYLQL 317
>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 139/218 (63%), Gaps = 1/218 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ W+EKYRP ++ D+ E++ + ++ PH+L YGPPGTGKT+T LAIA +LF
Sbjct: 11 AKMWIEKYRPHELTDLLSHTEIISTIQRLIDGGKLPHLLLYGPPGTGKTSTVLAIAKKLF 70
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G L ++ VLELNASDDRGI+V+R +IK FA+ P K+IILDEAD M
Sbjct: 71 GNRLTQN-VLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPDIKLIILDEADQM 129
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRRT+E YSK RF ICNY+++II L SRC +FRF PL + + SR+ IC
Sbjct: 130 TKDAQAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKHEVVSRLEEIC 189
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
EE + + L + +S GD+R+ + LQ FG
Sbjct: 190 KEENVIYNQVGLDAIYRLSNGDMRKCVNILQSTFMSFG 227
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 8/315 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP + +V E+ L + PH+LFYGPPGTGKT+T LA A ++
Sbjct: 14 NMPWVEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLFYGPPGTGKTSTILAAAKMMY 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYKIIILDEADS 166
P+ S VLELNASDDRGI +VR +I FA + S + + P K+I+LDEAD+
Sbjct: 74 APKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLSMDKNQKSMP----KLIVLDEADA 129
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRR +E ++ RF ICNY+S+II + SRC + RF PL E + R+ +I
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLPNEQILPRLHYI 189
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
E L + + + L ++++GD+RR I LQ A F ++ + G P VE
Sbjct: 190 VQAESLTITKDGQNALLNLAEGDMRRIINILQSTAMAF-KTVDEWSVYQCVGYPLPNDVE 248
Query: 287 GLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ + + + A ++ I +E + S +L+ + D + I E +R+ C+A+
Sbjct: 249 KIVRILLNDSIEDAYTKIEEIRSERAFALSDILNSMHDFIFRLV-IPPELLSRLLVCMAD 307
Query: 346 VDKCLVDGADEYLQL 360
++ L G + LQL
Sbjct: 308 IEYHLSQGCSDRLQL 322
>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
Length = 395
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 151/239 (63%), Gaps = 6/239 (2%)
Query: 27 QSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
Q S + + + KR A PV Q + PWVEKYRP + DV+ ++++ + +E P
Sbjct: 20 QFSSDNTGKKAKRTAADLPVEAQDNLPWVEKYRPNTLDDVSGHQDILTTINKFVEANRLP 79
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---V 140
H+L YGPPGTGKT+T LA+A +++G + VLELNASDDRGI+VVR +IKTFA+ +
Sbjct: 80 HLLLYGPPGTGKTSTILALARRIYGTSNMRQMVLELNASDDRGIDVVREQIKTFASTKQI 139
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ G YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY ++
Sbjct: 140 FSMAPSASTGSSLASYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSP 199
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
L SRC +FRF PL E+ + S V H+ +E + + EA+S+L +S+GD+RRA+ LQ
Sbjct: 200 ALLSRCTRFRFSPLKEQDIRSLVDHVIEKEQVQIQPEAVSSLVKLSKGDMRRALNVLQA 258
>gi|410077369|ref|XP_003956266.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
gi|372462850|emb|CCF57131.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
Length = 321
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 179/331 (54%), Gaps = 15/331 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P L PWVEKYRP+ +KD+ EE + L + N PHM+ G PG GKTT+ +
Sbjct: 4 PSLTLELPWVEKYRPQLLKDIVGNEETIERLKQIAQDGNMPHMIISGLPGIGKTTSVHCL 63
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
AH+L G Y VLELNASDDRGI+V+R +IK FA Q++ P +KIIILD
Sbjct: 64 AHELLGSH-YSQAVLELNASDDRGIDVIRNQIKHFA-------QKKLNLPVGKHKIIILD 115
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R
Sbjct: 116 EADSMTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKR 175
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI--SVSGVI 280
+L + E + + L + ++GD+R+AI LQ + G + + D + V
Sbjct: 176 LLEVIELEKVEYTNDGLEAIIFTAEGDMRQAINNLQST--VAGHGLVNGDNVFKIVDSPH 233
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P V + L + ++ E+ N +GY + +++ F V + + ++ +
Sbjct: 234 PLIVRKMLLSTTLDESMNILRNELWN---KGYSSVDIVTTCFRVTKTLPQVKEAKRLEMI 290
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
K + +++G YLQL + + + + V
Sbjct: 291 KEIGFTHMRILEGVGTYLQLASMLAKIHKLV 321
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 139/214 (64%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ + ++T PH+LFYGPPGTGKT+T LA+A +
Sbjct: 43 EDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARR 102
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G + + VLELNASDDRGI+VVR +IKTFA+ + YK+IILDEAD
Sbjct: 103 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEAD 162
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + V
Sbjct: 163 AMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDK 222
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ EE + ++AEA L +S+GD+RRA+ LQ
Sbjct: 223 VIAEENVQINAEATDALVRLSKGDMRRALNVLQA 256
>gi|407926292|gb|EKG19259.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 352
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 176/336 (52%), Gaps = 9/336 (2%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T +SS + + +K + PWVEKYRP + D+ E + L + N PH
Sbjct: 3 TAESSSAAARNGLKAQPNGAAGYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPH 62
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++ G PG GKTT+ L +A QL G + YK VLELNASD+RGI+VVR +IK FA
Sbjct: 63 VIISGMPGIGKTTSILCLARQLLG-DAYKEAVLELNASDERGIDVVRNRIKGFA------ 115
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q++ P KI+ILDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL S
Sbjct: 116 -QKKVTLPPGRQKIVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQS 174
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA R+ L++ + R++ IC E + + L+ L ++GD+R+AI LQ F
Sbjct: 175 RCAILRYSRLTDAQLVKRLMQICGAEQVEYSEDGLAALVFSAEGDMRQAINNLQSTHAGF 234
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
G + ++ V P V+ + C D A + + GY ++S +F V
Sbjct: 235 G-FVNGDNVFKVVDSPHPIKVQAMIQACHEQKVDAALDTLRELWDLGYSCHDIISTMFKV 293
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+S+ + K + +++G +LQL
Sbjct: 294 TKTIPTLSEHAKLEFIKEIGFTHMRILEGVQTFLQL 329
>gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus]
Length = 329
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 184/316 (58%), Gaps = 11/316 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+++ PWVEKYRPK + ++ E ++R + ++ PH+L YGPPGTGKT+T LA A +
Sbjct: 9 RANLPWVEKYRPKSLDELISHETIIRTINKFIDENQLPHLLLYGPPGTGKTSTILACARK 68
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+ P + S VLELNASDDRGI +VR +I +FA+ G +K+IILDEAD
Sbjct: 69 LYTPTQFNSMVLELNASDDRGIGIVRGQILSFAST--------GTMYKSAFKLIILDEAD 120
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PL+ E + R+ +
Sbjct: 121 AMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNY 180
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ E L + + L ++S GD+R+ ++ LQ +G + +++ + G P +
Sbjct: 181 VIEAENLKVTEDGKEALMTLSGGDMRKVLSVLQSTWFAYG-IVNQENVYNCVGHPLPSDI 239
Query: 286 EGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ + +D K++ + + +G +L+++ V++ + + +CK +A
Sbjct: 240 HTIINWLLNESYDTCYKKIQELKLNKGLALQDILTEIHLCVIKIDFPNSVFIDLLCK-MA 298
Query: 345 EVDKCLVDGADEYLQL 360
E++K L G + +Q+
Sbjct: 299 EIEKRLASGCRDIIQI 314
>gi|378727708|gb|EHY54167.1| replication factor C subunit 3/5 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 153/241 (63%), Gaps = 9/241 (3%)
Query: 27 QSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
Q S + + + KR +A PV + + PWVEKYRP + DV+ ++++ + +E P
Sbjct: 21 QFSSDNTAGKQKRIVADLPVEAEDNLPWVEKYRPNTLDDVSGHKDILATINRFIEQNKLP 80
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--- 140
H+L YGPPGTGKT+T LA+A Q++GP+ + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 81 HLLLYGPPGTGKTSTILALARQIYGPKNMRQMVLELNASDDRGIDVVREQIKTFASTKQI 140
Query: 141 ---AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ G + +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY +
Sbjct: 141 FSASTQQGPSGAKFGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHK 200
Query: 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
+ L SRC +FRF PL +E + V H+ EE +N+ +A+ +L +S+GD+RRA+ L
Sbjct: 201 LSPALLSRCTRFRFSPLKKEDIRRLVDHVIAEEKVNIAPDAVESLVELSKGDMRRALNVL 260
Query: 258 Q 258
Q
Sbjct: 261 Q 261
>gi|367055770|ref|XP_003658263.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
gi|347005529|gb|AEO71927.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 190/345 (55%), Gaps = 26/345 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLSDVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + + VLELNASDDRGI VVR IKTFA+ GS R G +K+IIL
Sbjct: 100 IYGHQNMRQMVLELNASDDRGIEVVREHIKTFASTKQIFTAGSSASRAGIAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 158 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLHEQDIRV 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA-----------------ARLF 264
V + EEG+ + +A+ +L +S+GD+RRA+ LQ +
Sbjct: 218 LVDKVIEEEGVKIMPDAVDSLVRLSKGDMRRALNVLQACHASSTPLQPRDGPKIPEQDIV 277
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRS-GDFDLANKEVNNI-IAEGYPASLLLSQLF 322
+IT++ + + PP+ ++ + + S D +N + A+G + +++ L
Sbjct: 278 RETITTETIYNCVAAPPPDAIKKILSTLLSTSDVTSCLSTINTLKAAQGLALADIITALS 337
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ +V+ E + + + LA+V+ + GA E +Q V V
Sbjct: 338 EELVKLE-VKPQVMITWLETLADVEHRVSSGASEAIQTAAVVGAV 381
>gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 335
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 173/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH++ GP
Sbjct: 19 PWVEKYRPSRVADVVGNADAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGP 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 79 S-YREGVLELNASDDRGLDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTT 130
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 131 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAA 190
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F + +++ V P V+ +
Sbjct: 191 EKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGF-RFVNQENVFKVCDQPHPLHVKSMV 249
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G FD A + + GY + +++ LF V++ D+++ + + K
Sbjct: 250 KNVLDGKFDEACSGLKQLYDLGYSPTDIITTLFR-VIKNYDMAEFLKLELLKETGFAHMR 308
Query: 350 LVDGADEYLQL 360
+ DG +LQL
Sbjct: 309 ICDGVGSFLQL 319
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 178/312 (57%), Gaps = 12/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 32 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGK 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR +IK FA + R + YK+IILDEAD MT
Sbjct: 92 D-YRKQILELNASDDRGIDVVREQIKNFA-------ETRTLF-LKGYKLIILDEADMMTT 142
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + R+ +
Sbjct: 143 AAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVERRLSGVIEA 202
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L + L +S+GD+RRA+ LQ + I ++ + +G P +E +
Sbjct: 203 EGVKLTEDGKKALLKLSKGDMRRALNVLQACHAAY-DLIGEDEIYNCTGNPHPTDIESVV 261
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
S DF + K ++ + E G L++ ++ +ET D + + LA +
Sbjct: 262 NSMLSDDFTTSYKMISALKVERGLALPDLINGAYE-YIETIDFKPHARIYLLDFLATTEH 320
Query: 349 CLVDGADEYLQL 360
L GA+E +QL
Sbjct: 321 RLSSGANEKIQL 332
>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
Length = 390
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 139/214 (64%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ + ++T PH+LFYGPPGTGKT+T LA+A +
Sbjct: 43 EDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARR 102
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G + + VLELNASDDRGI+VVR +IKTFA+ + YK+IILDEAD
Sbjct: 103 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEAD 162
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + V
Sbjct: 163 AMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDK 222
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ EE + ++AEA L +S+GD+RRA+ LQ
Sbjct: 223 VIAEENVQINAEATDALVRLSKGDMRRALNVLQA 256
>gi|156379406|ref|XP_001631448.1| predicted protein [Nematostella vectensis]
gi|156218489|gb|EDO39385.1| predicted protein [Nematostella vectensis]
Length = 401
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/275 (42%), Positives = 165/275 (60%), Gaps = 9/275 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L + N P+++ GPPGTGKTT+ L +A L G
Sbjct: 54 PWVEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTSILCLARALLGV 113
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 114 SL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 165
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIE + SRCA R+ L++ + +R+L IC++
Sbjct: 166 GAQQALRRTMEIYSKTTRFALACNTSDKIIEAIQSRCAILRYTRLTDAQVLTRLLEICDK 225
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L + ++GD+R+AI LQ FG + S+++ V P +++ +
Sbjct: 226 EQVPKVDDGLEAIIFTAEGDMRQAINNLQSTYYGFG-MVNSENVFKVCDEPHPLLIKEML 284
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
C GD D A K ++++ GY +++ +F V
Sbjct: 285 KSCSVGDIDEAYKVLSHLWNMGYSPEDIITNIFRV 319
>gi|32451662|gb|AAH54598.1| Rfc4 protein [Danio rerio]
Length = 202
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/153 (66%), Positives = 120/153 (78%), Gaps = 1/153 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 30 QRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GP+LY+ RVLELNASD+RGI VVR K+K FA + V +G R G CPP+KIIILDEAD
Sbjct: 90 LYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTV-AGTRPDGKTCPPFKIIILDEAD 148
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
SMT AQ ALRRTME S+ TRF ICNY+SR+
Sbjct: 149 SMTSAAQAALRRTMEKESRTTRFCLICNYVSRL 181
>gi|366997707|ref|XP_003683590.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
gi|357521885|emb|CCE61156.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
Length = 325
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 175/313 (55%), Gaps = 15/313 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ E+ + L + + N PHM+ G PG GKTT+ +AH+L G
Sbjct: 11 PWVEKYRPHLLKDIVGNEDTIERLKHIAKDGNMPHMIISGLPGIGKTTSIHCLAHELLGD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 71 S-YSQAVLELNASDDRGIDVVRNQIKHFA-------QKKCHLPTGKHKIIILDEADSMTA 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+L I
Sbjct: 123 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLEITKA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI--SVSGVIPPEVVEG 287
E + + L L ++GD+R+AI LQ + + G S+ + D + V P V +
Sbjct: 183 EDVKYTNDGLEALIFTAEGDMRQAINNLQ--STVAGHSLVNGDNVFKIVDSPHPLIVKKM 240
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ A + KE+ + +GY A +++ F V ++ + Q+ + K +
Sbjct: 241 ILAPTLDDSLLILRKELWD---KGYSAVDIVTTSFRVTKTLYELKEPQRLDMIKEIGITH 297
Query: 348 KCLVDGADEYLQL 360
+++G YLQL
Sbjct: 298 MRILEGVGTYLQL 310
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 186/316 (58%), Gaps = 17/316 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V QE + L ++ N P+++F GP G GKTTT++A+A ++ G
Sbjct: 30 PWVEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNLMFTGPAGVGKTTTSIALAKEMLG- 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD RGI+ VR IK+F + AVGS P++II LDE D+MT
Sbjct: 89 EYWRQNFLELNASDARGIDTVRNDIKSFCRLKAVGS----------PFRIIFLDEVDNMT 138
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRR ME Y+K + F CNY S+II+P+ SRCA FRF P+ + R+ +I
Sbjct: 139 KDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFVPVKGHQIIKRLEYIAQ 198
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EGL +D A+ ++ ++GD+RRA+ LQ ++ G +T + + V P+ V+ +
Sbjct: 199 AEGLKIDIAAIESIVYFAEGDMRRAVNILQASSSA-GEEVTEESVDEVVSKAKPKDVKKI 257
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETE---DISDEQQARICKCLA 344
GDF A + + ++ + +G +++Q++ V + ++++ + + +
Sbjct: 258 VNKALDGDFIGARELLRDVMVVQGTSGEDMVTQIYQEVSKMALDGSLNEDIYINLVESIG 317
Query: 345 EVDKCLVDGADEYLQL 360
E D + +G++ +QL
Sbjct: 318 ETDYRIREGSNPRIQL 333
>gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga]
gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva]
Length = 324
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 182/322 (56%), Gaps = 16/322 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP + D+ E+ L + N P++L GPPGTGKTT+ L +A +L G
Sbjct: 8 WIEKYRPTTLDDIIGNPEITTRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLARELLGTH 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP--YKIIILDEADSMT 168
+KS V+ELNASDDRG++VVR IK FA + PP +KI+ILDE DSMT
Sbjct: 68 -FKSAVIELNASDDRGVDVVRESIKNFA---------KKSLVLPPNKHKIVILDEVDSMT 117
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
E AQ ALRR ME YS TRF CN ++IIEP+ SRCA R+ L +E + R++ IC+
Sbjct: 118 EPAQQALRRIMELYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLQDEQILKRLVTICD 177
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E L E + L + GDLRRA+ LQ + F +T ++ V + P++++ +
Sbjct: 178 MENLTYTDEGMEALLFSADGDLRRAVNNLQIVSAGF-KVVTKDNVFKVCDIPSPDLIQKM 236
Query: 289 FAVCRSGDFDLANKEVNNIIAEGY-PASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
C +G++ A+++V+ ++ G+ P +L++ V++T D + K +A
Sbjct: 237 LENCLNGNWRQAHEKVDQLLELGHSPVDILVT--MRNVLKTMDAPEHVLLEYIKSVALSH 294
Query: 348 KCLVDGADEYLQLLDVASNVIR 369
+V+G LQL + +N+ +
Sbjct: 295 MTMVNGLSTQLQLEKLLANLCK 316
>gi|389594993|ref|XP_003722719.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
gi|323363947|emb|CBZ12953.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
Length = 364
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 16/311 (5%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A S PWVEKYRP ++ V E+++ L + +++ N PH+L YGPPGTGKTTT A
Sbjct: 10 AKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--------VGSGQRRGGYPC 153
A+ L+G ++ VLE+NASDDRGI+VVR + + FA+ + S G P
Sbjct: 70 CAYYLYGKARVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGTGSSTGGGSGGPA 129
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
+K++ILDEAD M+ DAQ ALRR +E Y++ RF +CN+I++II L SRC +FRF P
Sbjct: 130 AKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAP 189
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
+ + M R+ ++ +EG+ + L+ +S GDLRR + +Q +A L + IT + +
Sbjct: 190 VKKSSMMPRLRYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASA-LSANEITEESV 248
Query: 274 ISVSGVIPPEVVEGLFAVCRSGDFDLAN-KEVNNIIAEGYPASLLLSQLFDVVVETEDIS 332
V+G P V + + S DF + K +++ +G + L ++ V++ +
Sbjct: 249 YRVTGNPTPADVTAIVSDMLSSDFATSWVKAEESVVQKGISMADLTREIHPVMMAMDLPQ 308
Query: 333 DEQQARICKCL 343
D CKC
Sbjct: 309 D------CKCF 313
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 191/323 (59%), Gaps = 20/323 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DVA ++++ + PH+L YGPPGTGKT+T LA+A +L+G
Sbjct: 32 PWVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYGPPGTGKTSTILAVARKLYGA 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ Y++ +LELNASDDRGI VVR +I+ FA+ ++ G P K++ILDEAD+MT
Sbjct: 92 Q-YQNMILELNASDDRGIEVVRQQIQDFASTKSISFG------PKVNVKLVILDEADAMT 144
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ ALRR +E Y+K TRF ICNY S+II L SRC +FRF PL ++ R+ ++
Sbjct: 145 KDAQFALRRVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRFAPLDPANVTERLRYVIQ 204
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
+EGL++ L+ + ++ GDLR+A+ LQ +A++ +T + + +G P+ +E +
Sbjct: 205 QEGLDVTDGGLAAIVRLANGDLRKALNILQ-SAQMASPHLTEEAVYLCTGNPMPKDIEQI 263
Query: 289 FAVCRSGDFDLANKEV-NNIIAEGYPASLLLSQ----LFDVVVE------TEDISDEQQA 337
+ F + + + NN+I + + + + L DV E T ++ +
Sbjct: 264 AYWLLNEPFSTSFQSILNNLIKLFHDITKMKTSKGLALVDVARELQPFVFTINMPPTVRV 323
Query: 338 RICKCLAEVDKCLVDGADEYLQL 360
++ LA+V+ L G +E LQL
Sbjct: 324 QLIDALADVEYRLAFGTNEKLQL 346
>gi|408397489|gb|EKJ76631.1| hypothetical protein FPSE_03181 [Fusarium pseudograminearum CS3096]
Length = 354
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 168/311 (54%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E V L N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 DSYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPVGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVLKRLMQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEFSDDGLAALVFSAEGDMRQAINNLQSTFAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A + + GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGKVDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQL 360
+++G LQL
Sbjct: 325 VLEGVQTLLQL 335
>gi|115459988|ref|NP_001053594.1| Os04g0569000 [Oryza sativa Japonica Group]
gi|38344372|emb|CAE02250.2| OSJNBb0032E06.6 [Oryza sativa Japonica Group]
gi|113565165|dbj|BAF15508.1| Os04g0569000 [Oryza sativa Japonica Group]
Length = 335
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 173/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L + N P+++ GPPGTGKTT+ L++AH+L GP
Sbjct: 18 PWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTGKTTSILSLAHELLGP 77
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 78 S-YREAVLELNASDDRGLDVVRNKIKMFA-------QKKVTLQPGRHKIVILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 130 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAA 189
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F + +++ V P V+ +
Sbjct: 190 EKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGF-RFVNQENVFKVCDQPHPLHVKNMV 248
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G FD A + + GY + +++ LF V++ D+++ + + K
Sbjct: 249 KNVLDGKFDEACSALKQLYDLGYSPTDIITTLFR-VIKNYDMAEYLKLELLKETGFAHMR 307
Query: 350 LVDGADEYLQL 360
+ DG +LQL
Sbjct: 308 ICDGVGSFLQL 318
>gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis]
gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis]
Length = 335
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/276 (41%), Positives = 161/276 (58%), Gaps = 9/276 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ ++ + L N P+++ GPPGTGKTT+ LA+AH+L G
Sbjct: 18 PWVEKYRPSKVSDIVGNQDALSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGS 77
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK V+ELNASDDRGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 78 N-YKEGVIELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIIILDEADSMTG 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA RF LS++ + R++ +
Sbjct: 130 GAQQALRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEILGRLMRVVEA 189
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F + +++ V P V+ +
Sbjct: 190 EKVAYVPEGLEAIIFTADGDMRQALNNLQATYSGF-QFVNQENVFKVCDQPHPLHVKSMV 248
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV 325
G+FD A + N+ GY A+ +++ LF V+
Sbjct: 249 QNVLEGNFDEACSRLKNLYDLGYSATDIITTLFRVI 284
>gi|119196513|ref|XP_001248860.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|392861939|gb|EAS37458.2| replication factor C subunit 4 [Coccidioides immitis RS]
Length = 352
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 180/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A Q+ G
Sbjct: 29 PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DVYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGKHKLVILDEADSMTS 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 141 GAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EDVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDSPHPVKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A + + GY + ++S +F V + + + K +
Sbjct: 260 KACYEGKVDSALDTLTELWDLGYSSHDIISTMFRVTKTIPSLPEHSKLEFIKEIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G ++QL S + +C NM PE F+
Sbjct: 320 ILEGLQTFVQL----SGCVAKLCKINMKPELFK 348
>gi|46125645|ref|XP_387376.1| hypothetical protein FG07200.1 [Gibberella zeae PH-1]
Length = 354
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 168/311 (54%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E V L N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 DSYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPVGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVLKRLMQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 206 EKVEFSDDGLAALVFSAEGDMRQAINNLQSTFAGFG-FVSGDNVFKVVDSPHPIKVQAML 264
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A + + GY + ++S +F V +S+ + K +
Sbjct: 265 KACYEGKVDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 324
Query: 350 LVDGADEYLQL 360
+++G LQL
Sbjct: 325 VLEGVQTLLQL 335
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 180/310 (58%), Gaps = 11/310 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ DV ++E + L + ++ + PH++F GP GTGKT+TA+A+ +LFG +
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K LELNASD+RGI+++R IK FA + + G +KII LDEAD +T +
Sbjct: 65 -WKENFLELNASDERGIDIIRNNIKDFAKIR--PSNKLG------FKIIFLDEADQLTNE 115
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME + TRF F CNY S+II P+ SRC RF+PL +E M ++ I E
Sbjct: 116 AQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNE 175
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
++D ++L + IS GD+R+AI +Q A + G SK + +SG I + L +
Sbjct: 176 KFDIDDDSLDAIYEISDGDMRKAINVMQ-AIQSTGEIKPSK-IYEISGEINKNEYKNLIS 233
Query: 291 VCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCL 350
+ +G F A ++ ++ + + + + + + E I++ Q+ I LAE + +
Sbjct: 234 LSLNGAFSDAKSLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRI 293
Query: 351 VDGADEYLQL 360
G + +Q+
Sbjct: 294 SQGGSDNVQM 303
>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 382
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 140/209 (66%), Gaps = 9/209 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++++ E++V +L + + PH+LFYGPPGTGKT+T LA A +L+G
Sbjct: 64 PWVEKYRPSSLEELVAHEDIVGILQKLIASNKLPHLLFYGPPGTGKTSTILACAKKLYGA 123
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +K VLELNASDDRGI+VVR +IK FA G +R K++ILDEAD+MT
Sbjct: 124 D-FKMMVLELNASDDRGIDVVRGQIKEFA------GTKR--LFSSGVKLVILDEADAMTN 174
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR +E Y+K TRF ICNY+++II L SRC KFRF PL E + R+ H+ ++
Sbjct: 175 DAQFALRRVIEKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQ 234
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + + + + + + QGD+RR + LQ
Sbjct: 235 EKVTITPDGVEAVMRLGQGDMRRVLNLLQ 263
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 184/316 (58%), Gaps = 12/316 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP ++DV ++++ L + + PHMLFYGPPGTGKT+T LA A +
Sbjct: 20 ESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARK 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP Y+++++ELNASDDRGI+ VR +IK FA+ R + +K+IILDEAD
Sbjct: 80 IYGPN-YRNQLMELNASDDRGIDAVREQIKNFAST-------RQIF-ASTFKMIILDEAD 130
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQNALRR +E Y+K RF ICNYI++I + SRC +FRF+PL + + V H
Sbjct: 131 AMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDH 190
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ E N+D +A + +S+GD+R+A+ LQ + I + + G P +
Sbjct: 191 VIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQACHAAY-DHIDVSAIYNCVGHPHPSDI 249
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
+ + +F +A +++I + G +L+ +F+ + E E I + I LA
Sbjct: 250 DYFLKSIMNDEFVIAFNTISSIKQQKGLALQDILTCIFEALDELE-IKPNAKIFILDQLA 308
Query: 345 EVDKCLVDGADEYLQL 360
++ + G E +QL
Sbjct: 309 TIEHRMSFGCSEKIQL 324
>gi|15221697|ref|NP_176504.1| replication factor C 2 [Arabidopsis thaliana]
gi|12323266|gb|AAG51618.1|AC010795_22 replication factor, putative; 74998-73295 [Arabidopsis thaliana]
gi|182623790|gb|ACB88833.1| At1g63160 [Arabidopsis thaliana]
gi|332195942|gb|AEE34063.1| replication factor C 2 [Arabidopsis thaliana]
Length = 333
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 182/330 (55%), Gaps = 12/330 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L
Sbjct: 14 NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSM
Sbjct: 74 GTN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRT+E YS TRF CN ++IIEP+ SRCA RF LS++ + R+L +
Sbjct: 126 TSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVV 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
E + E L + + GD+R+A+ LQ F S + +++ V P V+
Sbjct: 186 AAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF-SFVNQENVFKVCDQPHPLHVKN 244
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ FD+A + + GY + +++ LF +++ D+++ + K
Sbjct: 245 IVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFR-IIKNYDMAEYLKLEFMKETGFAH 303
Query: 348 KCLVDGADEYLQLLDVAS--NVIRAVCNMP 375
+ DG YLQL + + +++R P
Sbjct: 304 MRICDGVGSYLQLCGLLAKLSIVRETAKAP 333
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 184/323 (56%), Gaps = 12/323 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 29 PWVEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGS 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK ++LELNASDDRGI+VVR ++K FA + R + YK+IILDEAD MT+
Sbjct: 89 D-YKKQILELNASDDRGIDVVREQVKQFA-------ETRTLF-SKGYKLIILDEADMMTQ 139
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++I + SRC +FRF PL + +V +
Sbjct: 140 QAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIAEVEKQVNRVVEA 199
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + L E L +S+GD+RRA+ LQ + I+ ++ + +G P+ +E +
Sbjct: 200 ENVQLTPEGKQALLKLSKGDMRRALNVLQACHAAY-DVISESEVYNCTGHPHPQDIEAIV 258
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
S +F + + ++ + E G L++ ++ +ET +I + + LA +
Sbjct: 259 NSMLSDEFTTSYQMISKLKTERGLALQDLIAGAYE-YLETIEIKPNARVYVLDLLATTEH 317
Query: 349 CLVDGADEYLQLLDVASNVIRAV 371
L G +E +QL + S AV
Sbjct: 318 RLSTGGNEKMQLTALLSAFKGAV 340
>gi|195135525|ref|XP_002012183.1| GI16571 [Drosophila mojavensis]
gi|193918447|gb|EDW17314.1| GI16571 [Drosophila mojavensis]
Length = 331
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 175/311 (56%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP + ++ E+ V L+ N P+++ GPPG GKTTT +A L G
Sbjct: 17 PWIEKYRPVKFDEIVGNEDTVARLSVFSTQGNSPNIIIAGPPGVGKTTTIQCLARILLG- 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNAS++RGI+VVR KIK FA Q++ P +KI+ILDEADSMTE
Sbjct: 76 DSYKDAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPRGRHKIVILDEADSMTE 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ +LRRTME YS TRF CN +IIEP+ SRCA RF LS+ + ++++ +C
Sbjct: 129 GAQQSLRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFSKLSDAQVLAKLIEVCQL 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L D + L + +QGD+R+A+ LQ A+ FG IT ++ V P +++ +
Sbjct: 189 EQLKYDEDGLEAIVFTAQGDMRQALNNLQSTAQGFG-EITGANVFKVCDEPHPMLLQDML 247
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C S D A K + + GY ++ +F V + ++ ++ + + +
Sbjct: 248 QHCASNDIHKAYKILAKLWRLGYAPEDIIGNIFR-VCKRLNVDEQLKLNFIREIGITHMK 306
Query: 350 LVDGADEYLQL 360
+VDG + LQL
Sbjct: 307 IVDGCNSLLQL 317
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 183/326 (56%), Gaps = 17/326 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E++++ + ++ PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 9 PWVEKYRPNTLDDLISHEDIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACAKQLYTP 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA--VAVGSGQRRGGYPCPPYKIIILDEADSM 167
++S VLELNASDDRGINVVR ++ FA+ SG +K+IILDEAD+M
Sbjct: 69 AQFRSMVLELNASDDRGINVVRGQVLNFASTRTIFKSG----------FKLIILDEADAM 118
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E ++ RF ICNY+S+II L SRC +FRF PL + + R+ ++
Sbjct: 119 TNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQIMPRLEYVV 178
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E + + + L ++QGD+R+ + LQ AA F + + + G +
Sbjct: 179 EQEKVKVTEDGKKALIDLAQGDMRKVLNILQSAATAF-PEVNEDSVYTCVGHPLKSDIMN 237
Query: 288 LFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + DF K++ + I +G +L++L + D+ + I +A++
Sbjct: 238 ILKWLLNDDFSTTFKKIQELKIQKGLALQDILTELHTFLYRL-DLPPDSLIEILTEMADI 296
Query: 347 DKCLVDGADEYLQL--LDVASNVIRA 370
+ L G E + L L A ++IR+
Sbjct: 297 EIRLNGGTSEKIHLGSLISAFHMIRS 322
>gi|344289927|ref|XP_003416692.1| PREDICTED: replication factor C subunit 2-like [Loxodonta africana]
Length = 352
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 179/311 (57%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLQVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPRGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + +R++ + +
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMDVIEK 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L + +QGD+R+A+ LQ FG I S+++ V P +V+ +
Sbjct: 207 EKVQCTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG-FINSENVFKVCDEPHPLLVKEMI 265
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C + D D A K + ++ GY + ++ +F V +T +++ + K +
Sbjct: 266 QRCVNADIDEAYKILAHLWHLGYSSEDIIGNIFR-VCKTFQMAEYLKLEFIKEIGYTHMK 324
Query: 350 LVDGADEYLQL 360
+V+G + LQ+
Sbjct: 325 IVEGVNSLLQM 335
>gi|194706108|gb|ACF87138.1| unknown [Zea mays]
Length = 331
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 172/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 14 PWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 74 S-YRDAVLELNASDDRGLDVVRNKIKMFA-------QKKVTLQPGRHKIVILDEADSMTS 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 126 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAA 185
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F I +++ V P V+ +
Sbjct: 186 EKVPYAPEGLEAIIFTADGDMRQALNNLQATFSGF-RFINQENVFKVCDQPHPLHVKNMV 244
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G FD A + + GY + +++ LF VV+ D+++ + + K
Sbjct: 245 KNVLDGKFDEACSALKQLYDLGYSPTDIITTLFR-VVKNYDMAEYLKLEMLKETGFAHMR 303
Query: 350 LVDGADEYLQL 360
+ DG +LQL
Sbjct: 304 ICDGVGSFLQL 314
>gi|146101518|ref|XP_001469135.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|398023497|ref|XP_003864910.1| replication factor C, subunit 3, putative [Leishmania donovani]
gi|134073504|emb|CAM72235.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|322503146|emb|CBZ38230.1| replication factor C, subunit 3, putative [Leishmania donovani]
Length = 364
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 177/311 (56%), Gaps = 16/311 (5%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A S PWVEKYRP ++ V E+++ L + +++ N PH+L YGPPGTGKTTT A
Sbjct: 10 AKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--------VGSGQRRGGYPC 153
A+ L+G + ++ VLE+NASDDRGI+VVR + + FA+ + S G P
Sbjct: 70 CAYYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPA 129
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
+K++ILDEAD M+ DAQ ALRR +E Y++ RF +CN+I++II L SRC +FRF P
Sbjct: 130 AKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAP 189
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
+ + M R+ + +EG+ + L+ +S GDLRR + +Q +A L + +T + +
Sbjct: 190 VKKSAMMPRLRFVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASA-LSANEVTEESV 248
Query: 274 ISVSGVIPPEVVEGLFAVCRSGDFDLANKEV-NNIIAEGYPASLLLSQLFDVVVETEDIS 332
V+G P V + + S DF + +V +++ +G + L ++ V++ +
Sbjct: 249 YRVTGNPTPADVTAIVSDMLSSDFATSWIKVEESVVQKGISIADLTREIHPVMMAMDLPQ 308
Query: 333 DEQQARICKCL 343
D CKC
Sbjct: 309 D------CKCF 313
>gi|320040647|gb|EFW22580.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 352
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 180/333 (54%), Gaps = 16/333 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A Q+ G
Sbjct: 29 PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLG- 87
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 88 DVYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGKHKLVILDEADSMTS 140
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 141 GAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQIVKRLMQICEA 200
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG ++ ++ V P V+ +
Sbjct: 201 EDVKHSDDGIAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDSPHPVKVQAMI 259
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G D A + + GY + ++S +F V + + + K +
Sbjct: 260 KACYEGKVDSALDTLTELWDLGYSSHDIISTMFRVTKTIPSLPEHSKLEFIKEIGFTHMR 319
Query: 350 LVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
+++G ++QL S + +C NM PE F+
Sbjct: 320 ILEGLQTFVQL----SGCVAKLCKINMKPELFK 348
>gi|289743537|gb|ADD20516.1| replication factor C subunit RFC2 [Glossina morsitans morsitans]
Length = 333
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/279 (40%), Positives = 160/279 (57%), Gaps = 9/279 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PW+EKYRP + ++ EE V L+ N P+++ GPPG GKTTT +A
Sbjct: 16 RHNMPWIEKYRPTKFDEIVGNEETVCRLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARI 75
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G +K VLELNAS++RGI+VVR KIK FA Q++ P +KI+ILDEAD
Sbjct: 76 LLGDS-FKEAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPKGRHKIVILDEAD 127
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ ALRRTME Y TRF CN +IIEP+ SRCA RF LS+ + ++V+
Sbjct: 128 SMTEGAQQALRRTMEIYCNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKVIE 187
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+C E L D E L + +QGD+R+A+ L+ ++ FG I+S ++ V P ++
Sbjct: 188 VCQREELQYDEEGLEAIVFTAQGDMRQALNNLESTSKGFG-KISSVNVFKVCDEPHPMLI 246
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
+ + C D A K + + GY A ++ +F V
Sbjct: 247 QDMLQYCAQNDIHKAYKILAKLWYLGYAAEDIIGNIFRV 285
>gi|452820599|gb|EME27639.1| replication factor C subunit 2/4 [Galdieria sulphuraria]
Length = 321
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 177/317 (55%), Gaps = 9/317 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRPK + +V +VV L + + PH+L GPPG GKTT L +A QL G
Sbjct: 3 EPWVEKYRPKTLDEVVGNPQVVSRLQAVVHGGSLPHLLLSGPPGCGKTTMILCLARQLLG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E + VLELNASDDRGI+V+R+K+KTFA Q++ P +KI+ILDEADSMT
Sbjct: 63 EEWFSQAVLELNASDDRGIDVIRSKVKTFA-------QQKMSLPSGKHKIVILDEADSMT 115
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
E AQ ALRRTME Y+ TRF CN S+IIEP+ SRCA R + L + ++ R+ +
Sbjct: 116 EGAQQALRRTMEIYATTTRFALACNTPSKIIEPIQSRCAVVRLRRLEDSEIAERLEQVLR 175
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E + + L + + GD+R A+ Q FG ++ +++ V P +V+ +
Sbjct: 176 LENVEWENSGLEAILFTADGDMRNALNNAQATVCGFG-KLSQENVFKVCDQPHPNLVKQI 234
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +N+ + ++ +GY A ++ LF V + ++++ + + K + +
Sbjct: 235 LESALEQNVTKSNEILCSLWNKGYSALDIVQTLFR-VARSHEMNEHLRLEVMKIVGKTHM 293
Query: 349 CLVDGADEYLQLLDVAS 365
+++G +QL + S
Sbjct: 294 KIMEGCASLIQLTALTS 310
>gi|403411420|emb|CCL98120.1| predicted protein [Fibroporia radiculosa]
Length = 361
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 186/350 (53%), Gaps = 33/350 (9%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHML---------FY--------GPPG 92
PWVEKYRP + D+ E + L + NCPH++ F+ G PG
Sbjct: 24 PWVEKYRPHALDDIVGNTETIERLKVIAKDGNCPHIIISVGPPKHPFFARLMARPKGMPG 83
Query: 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152
GKTT+ +AHQL G + YK VLELNASD+RGI+VVR KIK FA Q++ P
Sbjct: 84 IGKTTSIHCLAHQLLG-DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLP 135
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
+KI+ILDEADSMT AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+
Sbjct: 136 PGRHKIVILDEADSMTPGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYA 195
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
L + + R+L IC E + + + L+ L S+GD+R+AI LQ F S ++ +
Sbjct: 196 KLRDTEILKRLLEICEMEKVQYNDDGLTALIFTSEGDMRQAINNLQSTNSGF-SFVSGDN 254
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDIS 332
+ V P +V+ + C + D A ++N + +GY A ++ +F VV +++
Sbjct: 255 VFKVCDQPHPIIVQSIIRACLKSNIDDAMDKLNELWDQGYSAVDIIVTIFRVVKTFDEMP 314
Query: 333 DEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNM---PEEFQ 379
+ + K + +++G +QL ++ +C M PE F+
Sbjct: 315 EYTKLEYIKEIGWTHMRILEGVGTLIQL----GGLMARLCKMNMKPELFK 360
>gi|125977992|ref|XP_001353029.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
gi|195172285|ref|XP_002026929.1| GL12737 [Drosophila persimilis]
gi|54641780|gb|EAL30530.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
gi|194112697|gb|EDW34740.1| GL12737 [Drosophila persimilis]
Length = 331
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 169/295 (57%), Gaps = 14/295 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PE E V K ++ PW+EKYRP + ++ E+ V L+ N P+++ G
Sbjct: 2 PEDPETVVAEK-----RTHLPWIEKYRPAKFNEIVGNEDTVARLSVFATQGNAPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPKGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ + E L+ DAE L + +QGD+R+ + LQ A+ +G +IT
Sbjct: 169 RFTKLSDAQVLAKLIEVSKWESLSYDAEGLEAVVFTAQGDMRQGLNNLQATAQGYG-NIT 227
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
+++ V P+++E + C D A K + + + GY ++ +F V
Sbjct: 228 MENVFKVCDEPHPKLLEEMLQHCAVNDIHKAYKILAKLWSLGYSPEDIIGNIFRV 282
>gi|408403343|ref|YP_006861326.1| replication factor C small subunit [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363939|gb|AFU57669.1| replication factor C small subunit [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 328
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 185/319 (57%), Gaps = 27/319 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ +V +Q+E+++ ++N +++ + PHMLF GP G GKTTTAL IA +L G E
Sbjct: 13 WSEKYRPKKLAEVVNQKEIIKGISNMIKSPDIPHMLFSGPAGVGKTTTALCIAMELLGEE 72
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K LELNASD+RGI +VR ++K FAA +G + G P KIIILDEAD MT +
Sbjct: 73 -WKKNTLELNASDERGIKMVRERVKEFAASIKLAGDKEFGTP----KIIILDEADEMTSE 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR +E ++ TRF ICNY+S+IIEP+ SRC FRF L E + + IC +E
Sbjct: 128 AQTALRRIIEDSARTTRFIIICNYLSQIIEPIQSRCVVFRFTRLPREDVIDYLKMICEKE 187
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ + +AL+ + + GD+R +I +Q AA + S++S ++I+ G+ V +
Sbjct: 188 KVKFEEKALAQIYDATGGDMRHSINIMQAAAGM--GSVSSANVIAAMGLSGRARVNEVLK 245
Query: 291 VCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV---------VETEDISDEQQARICK 341
+ SG F+ A ++ L L+Q++ + E ++ E+
Sbjct: 246 LALSGKFNEARAKL-----------LELTQVYGMSETDFMKYANQEAYEMKIEKPDEFAA 294
Query: 342 CLAEVDKCLVDGADEYLQL 360
+AE D L GA +QL
Sbjct: 295 IMAEYDYRLAAGAHPDIQL 313
>gi|401429678|ref|XP_003879321.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495571|emb|CBZ30876.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 364
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 179/311 (57%), Gaps = 16/311 (5%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A S PWVEKYRP ++ V E+++ L + +++ N PH+L YGPPGTGKTTT A
Sbjct: 10 AKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--------VGSGQRRGGYPC 153
A+ L+G + ++ VLE+NASDDRGI+VVR + + FA+ + S GG P
Sbjct: 70 CAYYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGSGGGGPA 129
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
+K++ILDEAD M+ DAQ ALRR +E Y++ RF +CN+I++II L SRC +FRF P
Sbjct: 130 AKFKLVILDEADQMSYDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAP 189
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
+ + M R+ ++ +EG+ + L+ +S+GDLRR + +Q +A L + IT + +
Sbjct: 190 VKKSAMMPRLRYVAEQEGVKYTTDGLAAAFRLSRGDLRRCLNTMQSSA-LSANEITEESV 248
Query: 274 ISVSGVIPPEVVEGLFAVCRSGDFDLANKEV-NNIIAEGYPASLLLSQLFDVVVETEDIS 332
V+G P V + + S DF + +V ++ +G + L ++ +++ +
Sbjct: 249 YRVTGNPTPADVTAIVSDMLSSDFATSWIKVEEGVLQKGISMADLTREIHPIMMAMDLPQ 308
Query: 333 DEQQARICKCL 343
D CKC
Sbjct: 309 D------CKCF 313
>gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca]
Length = 318
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 183/315 (58%), Gaps = 21/315 (6%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+ +
Sbjct: 1 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 60
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
+ S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+DA
Sbjct: 61 FGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQDA 112
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
QNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ EE
Sbjct: 113 QNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEK 172
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAV 291
++L + + L +++ GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 173 VDLSEDGMKALVTLASGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDW 231
Query: 292 CRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE------DISDEQQARICKCLAE 345
+ DF A + + + +L L D++ ET D + + +A+
Sbjct: 232 MLNQDFTTAYRNITEL------KTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMAD 285
Query: 346 VDKCLVDGADEYLQL 360
++ L G +E +QL
Sbjct: 286 IEYRLSVGTNEKIQL 300
>gi|171677049|ref|XP_001903476.1| hypothetical protein [Podospora anserina S mat+]
gi|170936592|emb|CAP61251.1| unnamed protein product [Podospora anserina S mat+]
Length = 389
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 187/337 (55%), Gaps = 26/337 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLDDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ ++G+ + G +K+IIL
Sbjct: 100 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGASTSKTGLAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRV 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA-----------------RLF 264
V + +EE + + EA L +S+GD+RRA+ LQ ++
Sbjct: 218 LVDKVIDEEHIKIKPEAADALVKLSKGDMRRALNVLQACHASSTPLQPKDTPKIPEDQIV 277
Query: 265 GSSITSKDLISVSGVIPPEVVEGLF-AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLF 322
SIT + PP+V++ + + + D VN++ + +G + +++ L
Sbjct: 278 RESITVDTIYMCVAAPPPDVIKKIMNTLLSTSDVTACLAAVNSVKVTQGLALADIITALS 337
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQ 359
+ +V+ E + E LA+V+ + GA E +Q
Sbjct: 338 EELVKLE-VKPEVMITWLDLLAQVEHRVAGGASEVIQ 373
>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
Length = 347
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 179/319 (56%), Gaps = 16/319 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP + ++ +E+ L + PH+LFYGPPGTGKT+T LA A L+
Sbjct: 14 NMPWVEKYRPASLTELVSHQEITDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLY 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADS 166
+ S VLELNASDDRGI +VR +I FA + + + + P K+IILDEAD+
Sbjct: 74 TSKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVP----KLIILDEADA 129
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRR +E ++ RF ICNY+S+II + SRC + RF PLS E + R+ HI
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHI 189
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
E L + + L ++++GD+RR I LQ A F ++ ++ G P VE
Sbjct: 190 VQVETLTVTEDGQKALLNLAEGDMRRVINILQSTAMAF-KTVDEPNVYRCVGYPLPTDVE 248
Query: 287 GLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQL----FDVVVETEDISDEQQARICK 341
+ + + + A ++ I E + S +L+ + F +VV E +S R+
Sbjct: 249 KIVKILLNDSIEDAYTKIEEIRTERAFALSDILNSMHEFIFRLVVPPELLS-----RLLI 303
Query: 342 CLAEVDKCLVDGADEYLQL 360
C+A+++ L G + LQL
Sbjct: 304 CMADIEYHLSQGCSDRLQL 322
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 12/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 40 PWVEKYRPVSMDDIVSHKDITSTIEKFIEKNQLPHLLFYGPPGTGKTSTILAVARRIYGN 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR +IK FA + R + YK+IILDEAD MT
Sbjct: 100 D-YRKQILELNASDDRGIDVVREQIKNFA-------ETRTLF-LKGYKLIILDEADMMTT 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + R+ +
Sbjct: 151 AAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVERRLNSVIEA 210
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L + L +S+GD+RRA+ LQ F I + +G P +E +
Sbjct: 211 EGVKLTEDGKKALLKLSKGDMRRALNVLQACHAAF-DLIGEAQIYDCTGSPHPSDIETVV 269
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
S DF + K ++ + E G L++ ++ +ET D + + LA +
Sbjct: 270 NSMLSDDFTTSYKMISALKVERGLALPDLINGAYE-YIETIDFKPHVRVYVLDFLATTEH 328
Query: 349 CLVDGADEYLQL 360
L GA E +QL
Sbjct: 329 RLSTGASEKIQL 340
>gi|348517074|ref|XP_003446060.1| PREDICTED: replication factor C subunit 2-like [Oreochromis
niloticus]
Length = 357
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 175/311 (56%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N P+++ GPPGTGKTT+ L +A L G
Sbjct: 40 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGT 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 100 SM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR ME YSK TRF CN +IIEP+ SRCA R+ L++ + R+ + +
Sbjct: 152 GAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILVRLQEVVEK 211
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L++ + L + +QGD+R+A+ LQ FG I S+++ V P +V+ +
Sbjct: 212 ERLSVSDDGLEAIIFTAQGDMRQALNNLQSTHSGFG-YINSENVFKVCDEPHPLMVKSML 270
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A K V + A GY ++ +F V +T +++ + K +
Sbjct: 271 GHCVDGNIDEAYKVVEQLWALGYSPEDIIGNIFR-VCKTYQMAEYLKLEFIKEIGYTHMR 329
Query: 350 LVDGADEYLQL 360
+ +G + LQ+
Sbjct: 330 IAEGVNSLLQM 340
>gi|340729088|ref|XP_003402840.1| PREDICTED: replication factor C subunit 2-like [Bombus terrestris]
Length = 316
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 175/309 (56%), Gaps = 10/309 (3%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
+EKYRP+ D+ E+ V L+ E NCP+++ GPPG GKTTT L +A L GP +
Sbjct: 4 IEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAGPPGVGKTTTILCLARILLGP-V 62
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
+K VLELNAS++RGI+VVR KIK FA Q++ +KIIILDEADSMT+ A
Sbjct: 63 FKEAVLELNASNERGIDVVRNKIKMFA-------QKKVNLAKGKHKIIILDEADSMTDGA 115
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
Q ALRRTME YS TRF CN +IIEP+ SRCA R+ LS+ + ++++ +C +E
Sbjct: 116 QQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRYGKLSDAQILAKIIEVCQKED 175
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAV 291
++ + L + +QGD+R+A+ LQ FG + S+++ V P +V+ + +
Sbjct: 176 VSHTDDGLEAIVFTAQGDMRQALNNLQSTYNGFG-HVNSENVFKVCDEPHPLLVKEMLEL 234
Query: 292 CRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLV 351
C G A + ++ GY A L+S +F V I + + K + +V
Sbjct: 235 CAQGKISKAYGIMEHLWKMGYSAEDLVSNIFRVCTNL-SIEEPLKLDFIKEIGITHLGIV 293
Query: 352 DGADEYLQL 360
DG + LQ+
Sbjct: 294 DGINSLLQM 302
>gi|124249278|ref|NP_001074372.1| replication factor C subunit 2 [Bos taurus]
gi|122131746|sp|Q05B83.1|RFC2_BOVIN RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 subunit 2
gi|115545402|gb|AAI22636.1| Replication factor C (activator 1) 2, 40kDa [Bos taurus]
gi|296472929|tpg|DAA15044.1| TPA: replication factor C subunit 2 [Bos taurus]
Length = 352
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 177/311 (56%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + +R+L + +
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEK 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L + +QGD+R+A+ LQ FG I S+++ V P +V+ +
Sbjct: 207 EKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFG-FINSENVFKVCDEPHPLLVKEMI 265
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C S D D A K + ++ GY ++ +F V +T +++ + K +
Sbjct: 266 QHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFR-VCKTFQMAEYLKLEFIKEIGYTHMK 324
Query: 350 LVDGADEYLQL 360
+ +G + LQ+
Sbjct: 325 IAEGVNSLLQM 335
>gi|336368487|gb|EGN96830.1| hypothetical protein SERLA73DRAFT_111563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381281|gb|EGO22433.1| hypothetical protein SERLADRAFT_357265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 354
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 181/321 (56%), Gaps = 16/321 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ PWVEKYRP + DV +++ + ++ PH+LFYGPPGTGKT+T LA+
Sbjct: 31 PLDDEMLPWVEKYRPVTLDDVVSHKDITTTIEKFIDKNRLPHLLFYGPPGTGKTSTILAV 90
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++GPE Y+ ++LELNASDDRGI+VVR +IK FA RG +K+IILD
Sbjct: 91 ARRIYGPE-YRKQILELNASDDRGIDVVREQIKQFAETRTLFA--RG------FKLIILD 141
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD MT+ AQ ALRR +E Y+K RF ICNY+++I + SRC +FRF PL + R
Sbjct: 142 EADMMTQQAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIVEVEKR 201
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
+ + E + L + L +S+GD+RRA+ LQ + S+ ++ + +G P
Sbjct: 202 IGTVIEAEHVKLTEDGKKALLKLSKGDMRRALNVLQACHAAY-DSVGETEIYNCTGNPHP 260
Query: 283 EVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARI-- 339
+E + S +F + + ++ + E G L+S ++ + E I + QARI
Sbjct: 261 SDIENIVNSMLSDEFTTSYQMISTMKTERGLALQDLISGAYEYI---ETIEFKPQARIYL 317
Query: 340 CKCLAEVDKCLVDGADEYLQL 360
LA + L GA E +QL
Sbjct: 318 LDYLATTEHRLSAGASEKIQL 338
>gi|195375032|ref|XP_002046307.1| GJ12823 [Drosophila virilis]
gi|194153465|gb|EDW68649.1| GJ12823 [Drosophila virilis]
Length = 331
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 184/331 (55%), Gaps = 15/331 (4%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PE+ E V K +++ PW+EKYRP + ++ E+ V L+ N P+++ G
Sbjct: 2 PEEMETVVVDK-----RNNLPWIEKYRPVKFDEIVGNEDTVARLSVFSTQGNSPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLG-DSYKDAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ +LRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPRGRHKIVILDEADSMTEGAQQSLRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ +C E L D + L + +QGD+R+A+ LQ A+ FG IT
Sbjct: 169 RFTKLSDAQVLAKLIEVCQLEKLKYDEDGLEAIVFTAQGDMRQALNNLQSTAQGFG-DIT 227
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
++ V P +++ + C + D A K + + GY ++ +F V +
Sbjct: 228 GANVFKVCDEPHPMLLQDMLQHCAANDIHKAYKILAKLWRLGYAPEDIIGNIFR-VCKRL 286
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQL 360
++ ++ + + + +VDG + LQL
Sbjct: 287 NVDEQLKLNFIREIGITHMKIVDGCNSLLQL 317
>gi|440638884|gb|ELR08803.1| replication factor C subunit 3/5 [Geomyces destructans 20631-21]
Length = 393
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 140/217 (64%), Gaps = 3/217 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP ++DV+ ++++ + +ET PH+L YGPPGTGKT+T LA+A +
Sbjct: 43 EDTLPWVEKYRPDTLEDVSGHQDIIATINRFVETNRLPHLLLYGPPGTGKTSTVLALARR 102
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + G YK+IILD
Sbjct: 103 IYGVKNMRQMVLELNASDDRGIDVVREQIKTFASTRQIFSSAPSEASGKSMATYKLIILD 162
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 163 EADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKERDIRVL 222
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE +N+ EA L+ +S+GD+RRA+ LQ
Sbjct: 223 VDKVIEEETVNITREATEALTKLSKGDMRRALNVLQA 259
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 181/324 (55%), Gaps = 12/324 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ E+++ + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 9 PWVEKYRPKTLDDLIAHEDIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATARQLYEP 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR +I FA+ ++ +K+IILDEAD+MT
Sbjct: 69 KEFSSMVLELNASDDRGIGIVRGEILNFASTRTIFNKK--------FKLIILDEADAMTH 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II PL SRC +FRF PLS M R+ +
Sbjct: 121 DAQNALRRVIEKYADNARFCIICNYLSKIIPPLQSRCTRFRFGPLSVSQMVPRIEMVIKT 180
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISVSGVIPPEVVEG 287
E + + + +++GD+R+++ LQ + F I ++ G V+
Sbjct: 181 EDVPITPAGKQAIVDLAEGDMRKSLNILQASYMAFCERGKIDETEVYQCVGAPQKSVIAD 240
Query: 288 LFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + D A +++ +I + ++ ++ ++E D+ + + I L ++
Sbjct: 241 IMTHLMNDDITTAYRKILDIKTMKSLALQDIVHKVHQSIMEF-DLKAKVKIFILSKLGQL 299
Query: 347 DKCLVDGADEYLQLLDVASNVIRA 370
+K L G+ E +QL + S + +A
Sbjct: 300 EKRLAAGSSENIQLGSLVSIMFQA 323
>gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum]
Length = 387
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 146/234 (62%), Gaps = 3/234 (1%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
SS +K + K + + PWVEKYRP + DV+ E+++ + ++T PH+LF
Sbjct: 22 SSGQKGKKLSKANLPVSAGDTLPWVEKYRPDTLNDVSGHEDILTTINKFVQTNRLPHLLF 81
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSG 145
YGPPGTGKT+T LA+A ++G + +VLELNASDDRGI VVR +IKTFA+ G+
Sbjct: 82 YGPPGTGKTSTILALARHIYGAHNIRQQVLELNASDDRGIEVVREQIKTFASTKQIFGAS 141
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
+ G +K+IILDEAD+MT AQNALRR ME Y+ TRF I NY ++ L SR
Sbjct: 142 TKTDG-ELGSFKLIILDEADAMTSTAQNALRRIMEKYTANTRFCIIANYTHKLNAALLSR 200
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
C +FRF PL + + RV H+ + E + + A+ L +S+GD+RR++ LQ
Sbjct: 201 CTRFRFSPLPIDALRRRVDHVIDAEKVKITPSAVDALLQLSRGDMRRSLNVLQA 254
>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
Length = 322
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 173/319 (54%), Gaps = 13/319 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE V L N PHM+ G PG GKTT+ +AH++ G
Sbjct: 11 PWVEKYRPHLLKDIVGNEETVERLQQIAADGNMPHMIISGLPGIGKTTSIHCLAHEMLG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 ESYSQAVLELNASDDRGIDVVRNQIKHFA-------QKKCHLPPGKHKIIILDEADSMTA 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+L I
Sbjct: 123 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG-L 288
E + + L + ++GD+R+AI LQ G + +++ + P +V+ L
Sbjct: 183 EDVQYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG-LVNGENVFKIVDSPHPLIVKKML 241
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
A D +E + A+GY A +++ F V + + + + K +
Sbjct: 242 LAETLDESIDCLRQE---LWAKGYSAVDIVTTCFRVTKNLFQLKESVRLEMIKEIGTTHM 298
Query: 349 CLVDGADEYLQLLDVASNV 367
+++G YLQL + + +
Sbjct: 299 RILEGVSTYLQLASMLAKI 317
>gi|219127681|ref|XP_002184059.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404290|gb|EEC44237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 349
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 169/302 (55%), Gaps = 15/302 (4%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
++++ E S + K+ MA PWVEKYRP+ ++DV EE V L T N P++
Sbjct: 12 SEANKENSVAKAKKSMAGY---QVPWVEKYRPRVLEDVVGNEETVSRLRAISRTGNLPNL 68
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
+ GPPGTGKTT+ A+A QL G YK VLELNASD RGI+VVR +IK+FA V
Sbjct: 69 ILAGPPGTGKTTSVHALARQLLGAS-YKDAVLELNASDARGIDVVRNRIKSFAMNKV--- 124
Query: 146 QRRGGYPCPP--YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
PP +KIIILDEADSMT AQ ALRRTME YS TRF CN ++IIE +
Sbjct: 125 ------TLPPGRHKIIILDEADSMTSAAQQALRRTMELYSNTTRFCLACNVSTKIIEAIQ 178
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
SR A R+ L+ E + + +L +C E ++ +AL + ++GD+R A+ LQ + L
Sbjct: 179 SRAAILRYSRLANEQVLTCLLKVCQAESISYTNDALEAILFTAEGDMRHALNNLQASYFL 238
Query: 264 FGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFD 323
I+ + V P+ V + + C GD A ++ + GY + ++ +F
Sbjct: 239 TNGIISQTSVFKVCDQPHPKTVGQIISHCTKGDTKAACDQMQALWKSGYSTNDIIGTVFK 298
Query: 324 VV 325
VV
Sbjct: 299 VV 300
>gi|408383246|ref|ZP_11180783.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
gi|407814028|gb|EKF84666.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
Length = 321
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 180/316 (56%), Gaps = 17/316 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q+ ++ L + AN P+++F GP G GKTTTA+A+A + G
Sbjct: 4 PWVEKYRPQTLDEVVGQDHIIHRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLG- 62
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
E +K LELNASD RGI VR IK+F + AVGS P++II LDE D+MT
Sbjct: 63 EYWKQNFLELNASDARGIETVRKDIKSFCRLKAVGS----------PFRIIFLDEVDNMT 112
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRR ME Y+K + F CNY S+II+P+ SRCA FRF P+ + R+ I
Sbjct: 113 KDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIERLEIIAK 172
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E +N L ++ ++GD+RRA+ LQ A + G IT + V P+ V +
Sbjct: 173 AENVNYAPGTLESIVYFAEGDMRRAVNILQSTASM-GEEITEDIVHDVVSKAKPKDVRRI 231
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVV--VETED-ISDEQQARICKCLA 344
+ GDF A + + + +G +++Q++ V + +D IS E ++ + +
Sbjct: 232 VNLALDGDFMGARDLLREVMVVQGTSGEDMVTQVYQEVSRMAMDDLISSEDYIKLVEHIG 291
Query: 345 EVDKCLVDGADEYLQL 360
E D + +GA+ +QL
Sbjct: 292 EYDFRIREGANPRIQL 307
>gi|443404662|ref|YP_007379001.1| replication factor C small subunit [Halovirus HVTV-1]
gi|441462173|gb|AGC34465.1| replication factor C small subunit [Halovirus HVTV-1]
Length = 327
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 185/315 (58%), Gaps = 12/315 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + WVEKYRP+ + D+ EEVV+ + L+T + PH++F G G GKT A A +
Sbjct: 4 SDKIWVEKYRPQTLDDIVGHEEVVKRMRKFLDTEDVPHVVFAGKQGIGKTAIIQAFAKEK 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+G + +++ +LELNASD+RGI+ +R K+K +A +G YKI+ LDEAD
Sbjct: 64 YGVDNWRNNILELNASDERGIDTIRDKVKNYAV--------QGTIGDHQYKIVFLDEADQ 115
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
+T+DAQ ALRR ME ++ VTRFF CNY+S+II P+ SRCA F PL+++ + ++
Sbjct: 116 LTKDAQTALRRIMEDHADVTRFFLSCNYLSQIIGPIQSRCAPFSISPLTDDDLFQIGKNV 175
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
EEG+ ++ + L+ + + + GD R+ I +Q A ++ I + + V + +VE
Sbjct: 176 AEEEGIAIEDDTLTLMVNAADGDARKLINSMQAA--VYEGEIDANGVNVVVSTVDDALVE 233
Query: 287 GLFAVCRSGDFDLANKEVN-NIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ GD D A ++++ ++ EG PA+ L F V++ +D+ + +A++ +AE
Sbjct: 234 QIVNTAVEGDLDDAMRQLDVEVLKEGVPANQLCDS-FLRVIKKQDLPGDVKAKMLDKVAE 292
Query: 346 VDKCLVDGADEYLQL 360
+ + GA+ ++Q
Sbjct: 293 TNWRAMRGANPHVQF 307
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 195/346 (56%), Gaps = 7/346 (2%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T + P+K++ V + PWVEKYRP + DVA ++V + PH
Sbjct: 16 TYTARPDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPH 75
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+L YGPPGTGKT+T LA+A +L+G + Y++ +LELNASDDRGI+VVR +I+ FA S
Sbjct: 76 LLLYGPPGTGKTSTILAVARKLYGSQ-YQNMILELNASDDRGIDVVRQQIQDFA-----S 129
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q K+++LDEAD+MT+DAQ ALRR +E Y+K TRF ICN++++II L S
Sbjct: 130 TQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQS 189
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC +FRF PL ++ R+ H+ EGL+++ L+ L +S GD+R+A+ LQ + +
Sbjct: 190 RCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQ-STHMA 248
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
IT + + +G P+ +E + + F + K ++ + A + + + +
Sbjct: 249 SQQITEETVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVDIVREVTL 308
Query: 325 VVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
V + + ++ LA+++ L G ++ LQL V ++ RA
Sbjct: 309 FVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFSRA 354
>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
Length = 319
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 184/310 (59%), Gaps = 11/310 (3%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+ +
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
+ S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+DA
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQDA 113
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
QNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ EE
Sbjct: 114 QNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEK 173
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAV 291
+++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 174 VDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDW 232
Query: 292 CRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCL 350
+ DF A + + + +G +L+++ + V D + + +A+++ L
Sbjct: 233 MLNQDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEYRL 291
Query: 351 VDGADEYLQL 360
G +E +QL
Sbjct: 292 SVGTNEKIQL 301
>gi|390600120|gb|EIN09515.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 354
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 177/313 (56%), Gaps = 13/313 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + N ++ PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 37 PWVEKYRPVTLDDVVSHKDITCTIENFIQKNRLPHLLFYGPPGTGKTSTILAVARRIYGD 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ ++ ++LELNASDDRGI+VVR +IK FA + YK+IILDEAD MT+
Sbjct: 97 D-FRKQILELNASDDRGIDVVREQIKQFAETRTLFSK--------GYKLIILDEADMMTQ 147
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++I + SRC +FRF PL + RV + +
Sbjct: 148 AAQAALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPIPEVERRVQTVVDA 207
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L + L +S+GD+RRA+ LQ + I ++ + +G P +E +
Sbjct: 208 EGVQLREDGKKALLKLSKGDMRRALNVLQACHAAY-DEIGETEIYNCTGNPHPSDIETIV 266
Query: 290 AVCRSGDFDLANKEVNNIIA--EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ +F + + V N + G LL+ FD +ET ++ +A + LA +
Sbjct: 267 NSMLADEFTTSYQSVINALKTERGLALQDLLAGAFD-YIETIELKPHARAYLLDHLATTE 325
Query: 348 KCLVDGADEYLQL 360
L G E +QL
Sbjct: 326 YRLSTGGSEKIQL 338
>gi|448424755|ref|ZP_21582611.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
gi|445681965|gb|ELZ34390.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
Length = 223
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 139/226 (61%), Gaps = 10/226 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EADEQAAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDE+DS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E + V I E + + + L + GD+RRAI LQ AA
Sbjct: 173 DEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAAA 218
>gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 389
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 193/351 (54%), Gaps = 30/351 (8%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ +G+ R G +K+IIL
Sbjct: 100 IYGSENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASASRTGIAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 158 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRV 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA-----------------ARLF 264
V + EE + + EA L +S+GD+RRA+ LQ +
Sbjct: 218 LVDKVIEEETVKIIPEATEALVRLSKGDMRRALNVLQACHASSTPLQPRDAPKIPEKDIV 277
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRS-GDFDLANKEVNNI-IAEGYPASLLLSQLF 322
+IT++ + + PP+ ++ + S D +N + +A+G + +++ L
Sbjct: 278 RETITTQTIYNCVAAPPPDAIKKILGTLLSTSDVTSCLSTINTLKVAQGLALADIITALS 337
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373
D + + E + + + LAEV+ + G++E +Q S V+ A+ N
Sbjct: 338 DELTKLE-VKPQVMITWLEKLAEVEHRVSSGSNEAIQ----TSAVVGAIRN 383
>gi|346974683|gb|EGY18135.1| replication factor C subunit 4 [Verticillium dahliae VdLs.17]
Length = 361
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 170/311 (54%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 97 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPQGRHKLVILDEADSMTS 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ I
Sbjct: 150 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYGRLTDAQVVKRLMQIIEA 209
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ + P V+ +
Sbjct: 210 ESVQYSDDGLAALVFSAEGDMRQAINNLQSTFSGFG-FVSGDNVFKIVDSPHPVKVQAML 268
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ + A + + GY + ++S +F V +S+ + K +
Sbjct: 269 KACYEGNVNSALDILRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 328
Query: 350 LVDGADEYLQL 360
+++G LQL
Sbjct: 329 VLEGVQTLLQL 339
>gi|396478172|ref|XP_003840471.1| similar to replication factor C subunit [Leptosphaeria maculans
JN3]
gi|312217043|emb|CBX96992.1| similar to replication factor C subunit [Leptosphaeria maculans
JN3]
Length = 350
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 167/311 (53%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PHM+ G PG GKTT+ L +A QL G
Sbjct: 30 PWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLG- 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P K++ILDEADSMT
Sbjct: 89 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRQKLVILDEADSMTS 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + RV+ IC
Sbjct: 142 GAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRVMQICEA 201
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG + ++ V P V+ +
Sbjct: 202 EDVQYSDDGIAALVFSAEGDMRQAINNLQSTHAGFG-FVNGDNVFRVVDSPHPIKVQAMI 260
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C D A + + GY ++S +F V + +S+ + K +
Sbjct: 261 KSCHEQRIDDALTALKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHMR 320
Query: 350 LVDGADEYLQL 360
+++G LQL
Sbjct: 321 ILEGVQTLLQL 331
>gi|302421348|ref|XP_003008504.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
gi|261351650|gb|EEY14078.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
Length = 361
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 170/311 (54%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 38 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 97 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPQGRHKLVILDEADSMTS 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ I
Sbjct: 150 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYGRLTDAQVVKRLMQIIEA 209
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ L ++GD+R+AI LQ FG ++ ++ + P V+ +
Sbjct: 210 ESVQYSDDGLAALVFSAEGDMRQAINNLQSTFSGFG-FVSGDNVFKIVDSPHPVKVQAML 268
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ + A + + GY + ++S +F V +S+ + K +
Sbjct: 269 KACYEGNVNSALDILRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMK 328
Query: 350 LVDGADEYLQL 360
+++G LQL
Sbjct: 329 VLEGVQTLLQL 339
>gi|209876285|ref|XP_002139585.1| replication factor C subunit 2 [Cryptosporidium muris RN66]
gi|209555191|gb|EEA05236.1| replication factor C subunit 2, putative [Cryptosporidium muris
RN66]
Length = 323
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 178/317 (56%), Gaps = 24/317 (7%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRPK + D+ EEV+ L + N P++L GPPGTGKTT+ +A +L GP+
Sbjct: 6 WIEKYRPKILDDMVGNEEVLIRLKVLAKQGNMPNLLLSGPPGTGKTTSIHCLAAELLGPK 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ VLELNASDDRGI+VVR +IK+FA + + P +KIIILDE DSMT+
Sbjct: 66 FNRA-VLELNASDDRGIDVVRDRIKSFA-------KEKIDLPFGRHKIIILDEVDSMTDT 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS TRF CN ++IIEP+ SRCA R+ LS+E + R+ I E
Sbjct: 118 AQQALRRLMEVYSDSTRFALACNQSTKIIEPIQSRCAIIRYSKLSDEQIRERLFDIIKFE 177
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD-LISVSGVIPPEVVEGLF 289
+ + TL + GD+R AI LQ A G ++ SKD ++ +S + PE ++ +
Sbjct: 178 NIPYIDSGIETLIFTADGDMRIAINNLQ--ATYNGFTLISKDNVLKISDIPSPEKIKSIL 235
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDE---QQARICKCLAEV 346
C D+ LA+ + + GY D+V+ ++ Q+ I + L EV
Sbjct: 236 DACVKSDWRLAHNIAEELYSSGYSP-------LDIVITMRNVLKRYQLQETLILEYLKEV 288
Query: 347 DKC---LVDGADEYLQL 360
+C ++DG LQL
Sbjct: 289 GRCHFVMLDGCSTELQL 305
>gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|407035358|gb|EKE37658.1| replication factor C familiy protein [Entamoeba nuttalli P19]
gi|449710429|gb|EMD49506.1| replication factor C familiy protein, putative [Entamoeba
histolytica KU27]
Length = 325
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 186/316 (58%), Gaps = 15/316 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + E ++ L + PHMLFYGPPGTGKTTTALAI QL
Sbjct: 2 SLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLC 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + + + VLELNASD+RGI+VVR +IK+FA+ R C K IILDE+D +
Sbjct: 62 GTK-FSALVLELNASDERGIDVVRDQIKSFAST------RTLYTNCT--KFIILDESDKL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQNALRRT+E +S RF FICN + I + SRCAK RF PLS + ++ V +I
Sbjct: 113 TKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPDALTKIVENIT 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+EG+ +D +A ++ IS+GD R I LQ A + IT+ L ++ G+ P ++
Sbjct: 173 MKEGMEIDEDAKKSIIEISKGDARSIINTLQ-ALSMTCKQITNSTLYTMVGLPTPAQIDD 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISD-EQQARICKCLAE- 345
+ + S + + V+N+I G + ++ ++ ++E + IS ++ ARI +CL +
Sbjct: 232 IISELLSSPYLESFTVVDNLIKAGLSLNDIIIRVVPKLIEGKLISVLDKTARI-QCLYQL 290
Query: 346 --VDKCLVDGADEYLQ 359
+++ L G +E Q
Sbjct: 291 SLIEQALSIGGNERTQ 306
>gi|451846118|gb|EMD59429.1| hypothetical protein COCSADRAFT_41279 [Cochliobolus sativus ND90Pr]
Length = 353
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 167/311 (53%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PHM+ G PG GKTT+ L +A QL G
Sbjct: 30 PWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLG- 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P K++ILDEADSMT
Sbjct: 89 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRQKLVILDEADSMTS 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 142 GAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQICEA 201
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + ++ L ++GD+R+AI LQ FG + ++ V P V+ +
Sbjct: 202 EDVKYSDDGIAALVFSAEGDMRQAINNLQSTFAGFG-FVNGDNVFKVVDSPHPIKVQSMI 260
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C D A + + GY ++S +F V + +S+ + K +
Sbjct: 261 KACHEQRVDDALAALKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHMR 320
Query: 350 LVDGADEYLQL 360
+++G LQL
Sbjct: 321 ILEGVQTLLQL 331
>gi|406863129|gb|EKD16177.1| activator 1 subunit 3 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 395
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 148/240 (61%), Gaps = 5/240 (2%)
Query: 25 TTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
T S + + + KR A PV + S PWVEKYRP ++DV+ ++++ +T ++T
Sbjct: 19 TVMFSSDNTNSKGKRSAANLPVEAEDSLPWVEKYRPDTLEDVSGHQDILATITKFVDTNR 78
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
PH+L YGPPGTGKT+T LA+A Q++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 79 LPHLLLYGPPGTGKTSTILALARQIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTK 138
Query: 142 --VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
+ P YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY ++
Sbjct: 139 QIFTMNKTSTSASMPTYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLS 198
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
L SRC +FRF PL E + V + EE + ++ A L +S+GD+RRA+ LQ
Sbjct: 199 PALLSRCTRFRFSPLKEADIRVLVDKVITEENVQINESATDALVKLSKGDMRRALNVLQA 258
>gi|328772590|gb|EGF82628.1| hypothetical protein BATDEDRAFT_86526 [Batrachochytrium
dendrobatidis JAM81]
Length = 340
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 179/319 (56%), Gaps = 11/319 (3%)
Query: 43 PVLQSSQ-PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
P+ +S + PW+EKYRP + D+ EE V L + N P+++ G PG GKTT+ L
Sbjct: 13 PISESPELPWIEKYRPLVLSDIVGNEETVARLQIIAQEGNMPNIIIAGSPGIGKTTSILC 72
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+AH+L G YK VLELNASDDRGI VVR +IK FA Q++ P +KI+IL
Sbjct: 73 LAHELLGSA-YKEGVLELNASDDRGIEVVRNRIKMFA-------QKKVTLPPGRHKIVIL 124
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ L++ +
Sbjct: 125 DEADSMTSGAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAILRYTRLTDLQLLR 184
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP 281
R+L IC E + E LS + + GD+R+A+ LQ FG + +++ V
Sbjct: 185 RLLEICEMENVKHTPEGLSAIIFTADGDMRQAVNNLQSTNSGFG-FVNPENVFKVCDQPH 243
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
P +V+ + C + ++ + + + +GY A +++ LF VV++ +++ + K
Sbjct: 244 PVLVQKIVDACVRTEVEIGIQGMTELWDKGYSALDIITTLFR-VVKSFSMAEYIKLEFVK 302
Query: 342 CLAEVDKCLVDGADEYLQL 360
+ L++G LQL
Sbjct: 303 EIGFAHMRLLEGCQSLLQL 321
>gi|410898978|ref|XP_003962974.1| PREDICTED: replication factor C subunit 2-like [Takifugu rubripes]
Length = 350
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 175/311 (56%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V EE V L N P+++ GPPGTGKTT+ L +A L G
Sbjct: 33 PWVEKYRPLKLNEVVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGA 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 93 ST-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPRGRHKIIILDEADSMTD 144
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR ME YSK TRF CN +IIEP+ SRCA R+ L++ + +R+ + +
Sbjct: 145 GAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILARLQEVVEK 204
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E L++ + L + +QGD+R+A+ LQ FG + S+++ V P +V+ +
Sbjct: 205 EALSVSDDGLEAVIFTAQGDMRQALNNLQSTNAGFG-FVNSENVFKVCDEPHPLLVKSML 263
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C G+ D A K V + A GY ++ +F V +T +++ + K +
Sbjct: 264 GHCVDGNIDEAYKVVEQLWALGYSPEDIIGNIFR-VCKTYQMAEYLKLEFIKEIGYTHMR 322
Query: 350 LVDGADEYLQL 360
+ +G + LQ+
Sbjct: 323 VAEGVNSLLQM 333
>gi|195440776|ref|XP_002068216.1| GK10084 [Drosophila willistoni]
gi|194164301|gb|EDW79202.1| GK10084 [Drosophila willistoni]
Length = 333
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 175/314 (55%), Gaps = 10/314 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PW+EKYRP + ++ E+ V L+ N P+++ GPPG GKTTT +A L
Sbjct: 16 NSLPWIEKYRPVKFDEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARIL 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + YK VLELNAS++RGI+VVR KIK FA Q++ P +KI+ILDEADS
Sbjct: 76 LG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPKGRHKIVILDEADS 127
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MTE AQ ALRRTME YS TRF CN +IIEP+ SRCA RF LS+ + ++++ +
Sbjct: 128 MTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDSQVMAKLIEV 187
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
E L + + L + +QGD+R+A+ LQ A+ FG IT ++ V P +++
Sbjct: 188 SQLENLKYEEDGLEAIVFTAQGDMRQALNNLQSTAQGFG-DITGPNVFKVCDEPHPMLLQ 246
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ C D A K + + GY ++ +F V + +I ++ + + +
Sbjct: 247 DMLHHCAGNDIHKAYKILAKLWKLGYAPEDIIGNIFR-VCKRLNIDEQMKLNFIREIGIT 305
Query: 347 DKCLVDGADEYLQL 360
+VDG + LQL
Sbjct: 306 HMKIVDGNNSLLQL 319
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 179/321 (55%), Gaps = 8/321 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + +E PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E S VLELNASDDRGI+VVR +IKTFA S K+IILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAE----SKNHYNTCEKTTLKLIILDEADHMTY 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNA+RR ME Y+K RF +CNY+++I + SRC FRF PL +E M ++ L I
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKS 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP-PEVVEGL 288
E ++L + L +L + +GD+RR + LQ + + +++I + IP PE V+ +
Sbjct: 189 ENVDLTQDGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDI 248
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ + V + ++GY ++ L++ ++ T D D + K E++
Sbjct: 249 LEHLTKSTIKESYEFVTKLQCSKGYSIKDIMVNLYESIL-TYDFPDSAVCLLLKNFGEIE 307
Query: 348 KCLVDGADEYLQLLDVASNVI 368
+ GA+E + L + S I
Sbjct: 308 ERCSTGANEQITLSALISAFI 328
>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
Length = 329
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 179/313 (57%), Gaps = 12/313 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + ++ E +++ + ++ PH+L YGPPGTGKT+T LA A +L+ P
Sbjct: 12 PWVEKYRPKNLDELISHETIIKTINKFIDENQLPHLLLYGPPGTGKTSTILACARKLYTP 71
Query: 110 ELYKSRV-LELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ S V LELNASDDRGI +VR +I +FA+ G +K+IILDEAD+MT
Sbjct: 72 AQFNSMVVLELNASDDRGIGIVRGQILSFAST--------GTMYKSAFKLIILDEADAMT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PL+ E + R+ H+
Sbjct: 124 IDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIE 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
E LN+ + L ++S GD+R+ I+ LQ +G + ++ + G P + +
Sbjct: 184 AENLNVTEDGKQALMTLSGGDMRKVISVLQSTWFAYG-IVNEGNVYNCVGHPLPSDIRNI 242
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ +D K + + + +G +L+++ V++ + +CK LAE++
Sbjct: 243 VNWLLNEPYDTCYKNIQQLKLNKGLALQDILTEIHLCVIKIDFPDSIFIDLLCK-LAEIE 301
Query: 348 KCLVDGADEYLQL 360
K L G + +Q+
Sbjct: 302 KRLASGCRDAIQV 314
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 185/323 (57%), Gaps = 7/323 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA +++ + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 39 ATPWVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 98
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + Y + +LELNASDDRGI+VVR +I+ FA+ S + K+++LDEAD+M
Sbjct: 99 GAQ-YHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASV-----KLVLLDEADAM 152
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRR +E Y+K TRF ICN++++II L SRC +FRF PL + R+ H+
Sbjct: 153 TKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPMHVGERLKHVI 212
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
EGL++ L L +S GD+R+A+ LQ + + IT + + +G P+ V+
Sbjct: 213 EAEGLDVPESGLEALKCLSNGDMRKALNILQ-STHMASQQITEETVYLCTGNPLPQDVQQ 271
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ + F + K ++ I A + + + + V + + + + LA+++
Sbjct: 272 ITHWLLNESFAESYKRISEIKTRKGLALVDIVREVTMFVFKIKMQSDIRVPLINDLADIE 331
Query: 348 KCLVDGADEYLQLLDVASNVIRA 370
L G ++ LQL + ++ RA
Sbjct: 332 YRLSFGCNDKLQLGSLIASFTRA 354
>gi|195012119|ref|XP_001983484.1| GH15919 [Drosophila grimshawi]
gi|193896966|gb|EDV95832.1| GH15919 [Drosophila grimshawi]
Length = 331
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 10/315 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+++ PW+EKYRP + +++ E+ V L+ N P+++ GPPG GKTTT +A
Sbjct: 13 RNNLPWIEKYRPVKFEEIVGNEDTVARLSVFSTQGNSPNIIIAGPPGVGKTTTIQCLARI 72
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G + YK VLELNAS++RGI+VVR KIK FA Q++ P +KI+ILDEAD
Sbjct: 73 LLG-DSYKDAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPRGRHKIVILDEAD 124
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ +LRRTME YS TRF CN +IIEP+ SRCA RF LS+ + ++++
Sbjct: 125 SMTEGAQQSLRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIE 184
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+C E L D + L + +QGD+R+ + LQ A+ FG IT ++ V P ++
Sbjct: 185 VCQLEKLKYDEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-DITGTNVFKVCDEPHPMLL 243
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ + C + D A K + + GY ++ +F V + ++ ++ + + +
Sbjct: 244 QDMLQHCAANDIHKAYKILAKLWRLGYAPEDIIGNIFR-VCKRLNVDEQLKLNFIREIGI 302
Query: 346 VDKCLVDGADEYLQL 360
+VDG + LQL
Sbjct: 303 THMKIVDGCNSLLQL 317
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 185/319 (57%), Gaps = 7/319 (2%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+G +
Sbjct: 34 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 93
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y + +LELNASDDRGI+VVR +I+ FA S Q P K+++LDEAD+MT+D
Sbjct: 94 -YHNMILELNASDDRGIDVVRQQIQDFA-----STQSLSFGVKPSVKLVLLDEADAMTKD 147
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR +E Y+K TRF ICN++++II L SRC +FRF PL ++ R+ H+ N E
Sbjct: 148 AQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAE 207
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
L++ LS L +S GD+R+A+ LQ + + IT + + +G P+ +E +
Sbjct: 208 RLDVQDSGLSALVRLSNGDMRKALNILQ-STHMASQQITEEAVYLCTGNPLPKDIEQISY 266
Query: 291 VCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCL 350
+ + + K + ++ A + + + + V ++ + ++ LA+++ L
Sbjct: 267 WLLNEQYSESFKRIYDMKTRKGLALIDIVREVTMFVFKINMPSAVRVQLVNDLADIEYRL 326
Query: 351 VDGADEYLQLLDVASNVIR 369
G ++ LQL V ++ R
Sbjct: 327 SFGCNDKLQLGSVVASFTR 345
>gi|66802182|ref|XP_629875.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74851260|sp|Q54E21.1|RFC2_DICDI RecName: Full=Probable replication factor C subunit 2; AltName:
Full=Activator 1 subunit 2
gi|60463272|gb|EAL61464.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 338
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 177/318 (55%), Gaps = 9/318 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE V L + + N P+++ GPPGTGKT++ L +A L G
Sbjct: 21 PWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGA 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK V ELNASDDR ++VVR KIK+FA ++ P +KIIILDE DSMT
Sbjct: 81 N-YKEAVYELNASDDRTLDVVRDKIKSFA-------MKKVTLPAGRHKIIILDEVDSMTS 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR ME YS TRF F CN ++IIEP+ SRCA RF LS+ + +R+ +
Sbjct: 133 GAQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQI 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + + L+ + ++GD+R+A+ LQ FG I ++++ V P +++ +
Sbjct: 193 EKVPYTDDGLAAIIFTAEGDMRQALNNLQATHSGFG-LINAENVTKVCDQPHPLIIKQII 251
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
A+C DF A + + +GY + ++S LF + + +I + Q+ K + +
Sbjct: 252 ALCAKSDFKEAYPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCNLR 311
Query: 350 LVDGADEYLQLLDVASNV 367
G + +QL + S +
Sbjct: 312 ATTGVNTLVQLTGLLSKL 329
>gi|226493143|ref|NP_001149058.1| LOC100282678 [Zea mays]
gi|195624372|gb|ACG34016.1| replication factor C subunit 4 [Zea mays]
Length = 331
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 171/311 (54%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 14 PWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 74 S-YRDAVLELNASDDRGLDVVRNKIKMFA-------QKKVTLQPGRHKIVILDEADSMTS 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 126 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAA 185
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F I +++ V P V+ +
Sbjct: 186 EKVPYAPEGLEAIIFTADGDMRQALNNLQATFSGF-RFINQENVFKVCDQPHPLHVKNMV 244
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G FD + + GY + +++ LF VV+ D+++ + + K
Sbjct: 245 KNVLDGKFDEPCSALKQLYDLGYSPTDIITTLFR-VVKNYDMAEYLKLEMLKETGFAHMR 303
Query: 350 LVDGADEYLQL 360
+ DG +LQL
Sbjct: 304 ICDGVGSFLQL 314
>gi|15991286|dbj|BAB69675.1| replication factor C 40kDa subunit [Oryza sativa Japonica Group]
gi|116310007|emb|CAH67033.1| OSIGBa0139P06.6 [Oryza sativa Indica Group]
gi|218195393|gb|EEC77820.1| hypothetical protein OsI_17026 [Oryza sativa Indica Group]
Length = 335
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 172/311 (55%), Gaps = 10/311 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ L++AH+L GP
Sbjct: 18 PWVEKYRPTRVADVVGNSDAVARLQVIARDGNMPNLILSGPPGTGKTTSILSLAHELLGP 77
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ +KI+ILDEADSMT
Sbjct: 78 S-YREAVLELNASDDRGLDVVRNKIKMFA-------QKKVTLQPGRHKIVILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 130 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAA 189
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ F + +++ V P V+ +
Sbjct: 190 EKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGF-RFVNQENVFKVCDQPHPLHVKNMV 248
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
G FD A + + GY + +++ LF V++ D+++ + + K
Sbjct: 249 KNVLDGKFDEACSALKQLYDLGYSPTDIITTLFR-VIKNYDMAEYLKLELLKETGFAHMR 307
Query: 350 LVDGADEYLQL 360
+ DG +LQL
Sbjct: 308 ICDGVGSFLQL 318
>gi|17541988|ref|NP_500069.1| Protein RFC-2 [Caenorhabditis elegans]
gi|351021221|emb|CCD63484.1| Protein RFC-2 [Caenorhabditis elegans]
Length = 334
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 182/327 (55%), Gaps = 12/327 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK + D+ E +V L N P+++ GPPG GKTT+ A+A +
Sbjct: 7 QQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARE 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G ++ K VLELNASD+RGI+VVR +IKTFA Q + P +KIIILDEAD
Sbjct: 67 LLGDKV-KEAVLELNASDERGIDVVRHRIKTFA-------QTKVTLPEGRHKIIILDEAD 118
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+ AQ ALRRTME Y+K TRF CN +IIEP+ SRCA R+ LS + +RV
Sbjct: 119 SMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKE 178
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
+ E +N D L + +QGD+R+A+ LQ + + ++++ V P+++
Sbjct: 179 VAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQATVNAY-ELVNKENVLKVCDEPHPDLM 237
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE---DISDEQQARICKC 342
+ C F A+K ++ G+ + ++S LF VV E ++S++ + +
Sbjct: 238 IKMLHYCTDRKFFEASKIIHEFHRLGFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQ 297
Query: 343 LAEVDKCLVDGADEYLQLLDVASNVIR 369
+A +V G LQL + +++ R
Sbjct: 298 IAMCHMRIVQGLTSKLQLSRLIADLCR 324
>gi|342320961|gb|EGU12899.1| Replication factor C subunit 4 [Rhodotorula glutinis ATCC 204091]
Length = 438
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 189/347 (54%), Gaps = 19/347 (5%)
Query: 43 PVLQSSQPWVE-KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF---------YGPPG 92
P+ S+ P++ ++RPK + D+ E + L NCPH++ G PG
Sbjct: 92 PLYPSTTPFLRAQHRPKTLDDIVGNTETIERLKVIARDGNCPHIIISLVERWVRTQGAPG 151
Query: 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152
GKTT+ LA+A L G + YK VLELNASD+RGI+VVR +IKTFA Q++ P
Sbjct: 152 IGKTTSILALARALLGDKNYKEGVLELNASDERGIDVVRNRIKTFA-------QKKVTLP 204
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
+K+IILDEADSMT AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+
Sbjct: 205 LGRHKLIILDEADSMTTGAQQALRRTMELYSNTTRFALACNQSNKIIEPIQSRCAILRYA 264
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
LS++ + R+ IC E + + + L+ L S+GD+R+AI LQ FG + + +
Sbjct: 265 RLSDKELLKRLKEICEIEKVPHNEQGLTALIFTSEGDMRQAINNLQSTFSGFG-FVGADE 323
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDIS 332
+ V P V+ L + C GD D A + + +GY A ++S LF VV E +S
Sbjct: 324 VFKVCDQPHPVRVQQLVSACVKGDVDKAMDGLGELWGQGYAAVDVVSTLFRVVKGMEQLS 383
Query: 333 DEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQ 379
+ + + + +++G +QL + + + R + PE F+
Sbjct: 384 EYVRLEFIREIGFTHMRILEGVATVVQLGGLIARLCR-LSMKPELFK 429
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 112/312 (35%), Positives = 182/312 (58%), Gaps = 12/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 40 PWVEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLLFYGPPGTGKTSTILAVARKIYGN 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y+ ++LELNASDDRGI+VVR +IK FA + R Y +K+I+LDEAD MT+
Sbjct: 100 E-YRKQILELNASDDRGIDVVREQIKNFAEM-------RTLY-SKGFKLIVLDEADMMTQ 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E Y++ RF ICNY+++II + SRC +FRF PL + + R+ +
Sbjct: 151 AAQSALRRVIEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPQTEIEKRIKQVVEA 210
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +NL + L +S+GD+RRA+ LQ + + + + + +G P +E +
Sbjct: 211 EHVNLTEDGKQALLKLSKGDMRRALNILQACHAAYDRTDETA-IYNCTGNPHPSDIEAIV 269
Query: 290 AVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +F + ++V+ + + G L++ ++ +E+ ++ + + + LA +
Sbjct: 270 TSMMNDEFSTSYQKVSRMKTDKGLALQDLIAGTYE-YLESLELPPQTRVYLLDHLATTEH 328
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 329 RLSTGGSEKVQL 340
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 179/321 (55%), Gaps = 8/321 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + +E PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E S VLELNASDDRGI+VVR +IKTFA S K+IILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAE----SKNHYNTCEKTSLKLIILDEADHMTY 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNA+RR ME Y+K RF +CNY+++I + SRC FRF PL +E M ++ L I
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMINKALDIAKS 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIP-PEVVEGL 288
E ++L + L +L + +GD+RR + LQ + + +++I + IP PE V+ +
Sbjct: 189 ENVDLTKDGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDI 248
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ + V + + +GY ++ L++ ++ T D D + K E++
Sbjct: 249 LEHFTKSTIKESYEFVTKLQSTKGYSIKDIMVNLYESIL-TYDFPDSAVCLLLKSFGEIE 307
Query: 348 KCLVDGADEYLQLLDVASNVI 368
+ GA+E + L + S I
Sbjct: 308 ERCSSGANEQITLSALISAFI 328
>gi|302510945|ref|XP_003017424.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371]
gi|302657578|ref|XP_003020508.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517]
gi|291180995|gb|EFE36779.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371]
gi|291184348|gb|EFE39890.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517]
Length = 362
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 182/343 (53%), Gaps = 26/343 (7%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 29 PWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLG- 87
Query: 110 ELYKSRVLELNASDDRG----------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
+ YK VLELNASD+RG I+VVR +IK FA Q++ P +K++
Sbjct: 88 DTYKEAVLELNASDERGLLNYALNLFRIDVVRNRIKGFA-------QKKVTLPPGRHKLV 140
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEADSMT AQ ALRRTME +S TRF F CN ++IIEPL SRCA R+ L++ +
Sbjct: 141 ILDEADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQV 200
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
R++ IC E + + ++ L ++GD+R+AI LQ FG ++ ++ V
Sbjct: 201 VKRLMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFG-FVSGDNVFRVVDS 259
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
P V+ + C G D+A +N + GY A ++S +F V ++S+ +
Sbjct: 260 PHPVKVQAMIKACWEGKVDIALDTLNELWELGYSAHDIISTMFRVTKTIPNLSEHSKLEF 319
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIRAVC--NM-PEEFQ 379
K + +++G +QL S I +C NM PE F+
Sbjct: 320 IKEIGFTHMRILEGLQTLVQL----SGCIAKLCKINMKPELFK 358
>gi|338712627|ref|XP_001504577.3| PREDICTED: replication factor C subunit 2-like isoform 1 [Equus
caballus]
Length = 353
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 179/312 (57%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
PWVEKYRP ++ ++ E+ V L +L N P+++ GPPGTGKTT+ L +A L G
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVSLCREGNVPNIIIAGPPGTGKTTSILCLARALLG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 95 PAL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMT 146
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+ AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + +R++ I
Sbjct: 147 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMTIIE 206
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
+E + + L + +QGD+R+A+ LQ FG I S+++ V P +V+ +
Sbjct: 207 KENVPYTDDGLEAIVFTAQGDMRQALNNLQSTFSGFG-FINSENVFKVCDEPHPLLVKEM 265
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
C + D D A K + ++ GY ++ +F V +T +++ + K +
Sbjct: 266 IQHCVNADIDGAYKILAHLWHLGYSPEDIIGNIFR-VCKTFQMAEYLKLEFIKEIGYTHV 324
Query: 349 CLVDGADEYLQL 360
+ DG + LQ+
Sbjct: 325 KIADGVNSLLQM 336
>gi|408397619|gb|EKJ76759.1| hypothetical protein FPSE_02945 [Fusarium pseudograminearum CS3096]
Length = 390
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 187/337 (55%), Gaps = 25/337 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ ++G G R G +K+IIL
Sbjct: 99 IYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLG-GASRSGNAMAGFKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRV 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA-----------------ARLF 264
V + EE + + EA+ L +S+GD+RRA+ LQ + +
Sbjct: 218 LVDKVVEEENVQVKGEAIDALVKLSKGDMRRALNVLQACHASSTPLRAKDAPKVPDSEIQ 277
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFA-VCRSGDFDLANKEVNNI-IAEGYPASLLLSQLF 322
+IT++ + + PP+ ++ + + + ++ D +N + + G + +++ L
Sbjct: 278 RENITTETIYNCIAAPPPDAIKEIVSTLLKTSDVTSCLNTINALKVQRGLALADIITALS 337
Query: 323 DVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQ 359
+ +V+ E +S E LA ++ + G+ E +Q
Sbjct: 338 EELVKLE-VSPEVMITWLDGLANIEHRVASGSSESIQ 373
>gi|308485377|ref|XP_003104887.1| CRE-RFC-2 protein [Caenorhabditis remanei]
gi|308257208|gb|EFP01161.1| CRE-RFC-2 protein [Caenorhabditis remanei]
Length = 329
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 180/323 (55%), Gaps = 12/323 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E +V L + N P+++ GPPG GKTT+ A+A +L G
Sbjct: 11 PWVEKYRPQVLSDIVGNENMVSRLEVIAKEGNVPNIILSGPPGIGKTTSVWALARELLGD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ K VLELNASD+RGI+VVR +IKTFA Q + P +KIIILDEADSMT+
Sbjct: 71 KV-KEAVLELNASDERGIDVVRNRIKTFA-------QTKVTLPEGRHKIIILDEADSMTD 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ LS + RV +
Sbjct: 123 GAQQALRRTMELYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVELLYRVKEVAKA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +N D L + +QGD+R+A+ LQ + + ++++ V P+++ +
Sbjct: 183 ESVNYDDGGLEAILFTAQGDMRQALNNLQATVNAY-ERVNKENVLKVCDEPHPDLMIKML 241
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE---DISDEQQARICKCLAEV 346
C F A K ++ G+ + +LS LF VV E ++S++ + + K +
Sbjct: 242 LYCTEKKFFEAAKIIHEFHRLGFSSDDILSTLFRVVKTVELSKNVSEQLRMQYIKEIGVC 301
Query: 347 DKCLVDGADEYLQLLDVASNVIR 369
+V G LQL + +++ R
Sbjct: 302 HMRVVQGLTSKLQLSRLVADLCR 324
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 182/311 (58%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QE++VR L + +++ N PH+LF GPPG GKT A+A+A +FG +
Sbjct: 7 WTEKYRPKTLDDVIGQEQIVRRLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMFG-D 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+++ +ELNASD+RGI VVR IK FA + G+ R +K+I LDEAD++T D
Sbjct: 66 AWQNNFIELNASDERGIEVVRNNIKNFARTS-PLGEAR-------FKVIFLDEADALTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF L + + + V I E
Sbjct: 118 AQSALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAIYRFGLLGPKDVETMVRRIEKGE 177
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ + + L L +++GD+RRAI LQ A+ + +T+ + + P+ +E +
Sbjct: 178 HIKVSPDGLEALIYVARGDMRRAINALQSASTV-TKHVTADVVFETMSIARPKEIEDMLK 236
Query: 291 VCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ +G F D NK + +I G + ++ Q++ + + + + + E D
Sbjct: 237 LALNGQFMDARNKLDDLLIKYGLSGNDVVDQIYSAMFAL-GLDEGVLVDLVDRIGEADFR 295
Query: 350 LVDGADEYLQL 360
L +GA+E +Q+
Sbjct: 296 LTEGANERIQV 306
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/312 (35%), Positives = 179/312 (57%), Gaps = 12/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +L+G
Sbjct: 55 PWVEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLLFYGPPGTGKTSTVLALARRLYG- 113
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK +LELNASDDRGI+VVR +IK FA V + +K++ILDEAD MT+
Sbjct: 114 SAYKKHILELNASDDRGIDVVREQIKNFAMTKVLFSK--------GFKLVILDEADMMTQ 165
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E ++K RF +CNY+++I + SRC +FRF PL E+ + +V + +
Sbjct: 166 AAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQK 225
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+NL + L +S+GD+RRA+ LQ + ++ + + +G P +E +
Sbjct: 226 EGVNLTEDGRDALLKLSRGDMRRALNVLQACHAAY-DTVDETAVYNCTGNPHPRDIERVV 284
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +F A + ++ I +G L++ ++ ++T ++ + + + L +
Sbjct: 285 QSMMADEFGTAYSLITSLKIEKGLALQDLIAGAYE-FLDTVELPKQSRIYLLDHLGSTEH 343
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 344 RLSLGGSEKMQL 355
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,654,809,925
Number of Sequences: 23463169
Number of extensions: 224015787
Number of successful extensions: 922812
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8728
Number of HSP's successfully gapped in prelim test: 11644
Number of HSP's that attempted gapping in prelim test: 891787
Number of HSP's gapped (non-prelim): 26157
length of query: 382
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 238
effective length of database: 8,980,499,031
effective search space: 2137358769378
effective search space used: 2137358769378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)