BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016800
(382 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1
Length = 364
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/332 (56%), Positives = 246/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VS 277
R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I+ ++
Sbjct: 207 QQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP ++G+F C SG FD V N+I EG+ A+ L++QL D ++E E++SD+ ++
Sbjct: 267 GVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 327 IITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/354 (55%), Positives = 254/354 (71%), Gaps = 11/354 (3%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+
Sbjct: 185 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITF 244
Query: 257 LQGAARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPAS 315
LQ A RL G IT K + ++GVIP E ++G+FA C+SG FD V ++I EG+ A+
Sbjct: 245 LQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAAT 304
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
L++QL DVVVE ++SD+Q++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 305 QLVNQLHDVVVEN-NLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 361 bits (926), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 168/328 (51%), Positives = 228/328 (69%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL R+
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ + + +S GD+R+AITYLQ A R F + I+ + +++G +PP+++
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLI 246
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ L C+ FD V +IIA+GYP S ++SQLFD V+ T+D++ Q++ I +
Sbjct: 247 KQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGN 306
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAVCN 373
VD+ L+DG++E+LQL D++S +++ + N
Sbjct: 307 VDRNLIDGSEEFLQLFDLSSYIMKQLNN 334
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 334 bits (857), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 169/343 (49%), Positives = 235/343 (68%), Gaps = 12/343 (3%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
+K+E E K+ S PWVE YRPK + V+ QE V+VL TL + N PHMLFYG
Sbjct: 9 KKTEQEAKK--------SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGS 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA++ +LFGP+L KSRVLELNASD+RGI+++R K+K+FA V + + G
Sbjct: 61 PGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN--KVDG 118
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
YPCPP+KIIILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++RII+PL+SRC+K+R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSIT 269
FKPL E M R+ I ++ ++++ ++ L S GD+R+AIT+LQ AA L G+ IT
Sbjct: 179 FKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPIT 238
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
+ ++G +P ++ L + + ++ AEGY ++LSQL DV+++ E
Sbjct: 239 ISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEE 298
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372
+S + +I L+EVDK L DGADE LQLLD+ S+ I VC
Sbjct: 299 TLSSPVKYKIFMKLSEVDKRLNDGADETLQLLDLLSS-ISVVC 340
>sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1
Length = 411
Score = 328 bits (842), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 178/377 (47%), Positives = 240/377 (63%), Gaps = 53/377 (14%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG---------- 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFR
Sbjct: 153 YSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT- 269
FK L + RV I E + LDA L ++ GDLR+AIT+LQ AARL G++ T
Sbjct: 213 FKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTA 272
Query: 270 ----------------------SKDLIS------VSGVIPPEVV----EGLF--AVCRSG 295
SK IS ++GVIP + + LF + +S
Sbjct: 273 GRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDALFPKSAAKSI 332
Query: 296 DFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGAD 355
++ K V N+IAEG+ AS +SQL++ V+ E + D ++ R+ +E DK LVDG D
Sbjct: 333 RYNEIAKVVENMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSETDKRLVDGGD 392
Query: 356 EYLQLLDVASNVIRAVC 372
E+L +LD+ V +C
Sbjct: 393 EHLAVLDLGVRVAGVLC 409
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 321 bits (822), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 159/324 (49%), Positives = 216/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + +SGDFD K VN + G+ A+ +++QL + + ++ + +I
Sbjct: 263 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSRLNNGTNEHIQLLNL 346
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
IC +EG+ + + L L IS GD R+AI LQGAA + G + + + ++ PE
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEE 230
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+ L G+F A + ++ ++ E G +++QLF ++ + I D + ++ L
Sbjct: 231 MTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREII-SMPIKDSLKVQLIDKL 289
Query: 344 AEVDKCLVDGADEYLQL 360
EVD L +GA+E +QL
Sbjct: 290 GEVDFRLTEGANERIQL 306
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 254 bits (649), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 140/312 (44%), Positives = 190/312 (60%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + D+ Q+ VV L ++ N PH+LF GPPGTGKTT A A+AH LFG E
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGINV+R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 68 NYRQYMLELNASDERGINVIREKVKEFA--------RSRTPPEIPFKIVLLDEADNMTSD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS VTRF I NY S+II+P+ SRCA FRF+PLS++ + R+ +I E
Sbjct: 120 AQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G++ + EAL + IS+GD+R+AI LQ A+ L +T + V G+ P V + A
Sbjct: 180 GVDYEEEALDAIYEISEGDMRKAINVLQAASYL--GKVTVDAVYRVVGMAKPREVREMLA 237
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
GDF A + I+ E G + Q+ + TE + +E + L EV
Sbjct: 238 TALKGDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHY 297
Query: 349 CLVDGADEYLQL 360
LV+G+D+ +QL
Sbjct: 298 RLVEGSDDDIQL 309
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 191/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + SR+ I +E
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ +D EAL + +S+GD+RRAI LQ AA L +T + V G+ P + +
Sbjct: 184 KVEIDEEALEAIHDLSEGDMRRAINILQAAAAL--GKVTVDSVYKVVGLAHPREIRQMIQ 241
Query: 291 VCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ +G+F+ A +++ + I G ++ Q+ + T+ I DE + I E+
Sbjct: 242 LALAGNFNDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQF 301
Query: 349 CLVDGADEYLQL 360
LV+GAD+ +QL
Sbjct: 302 RLVEGADDEIQL 313
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 248 bits (633), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 193/319 (60%), Gaps = 17/319 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI+VVRTKIK FA A G +KII LDEAD++T D
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMGG--------AEFKIIFLDEADALTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY SRIIEP+ SRCA FRF+ LS+E + R+ +I ++
Sbjct: 123 AQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQ 182
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLF 289
L++ + L +SQGD+R+A+ LQ AA + SI+ + + PE + L
Sbjct: 183 VLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLI 242
Query: 290 AVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETED-------ISDEQQARICK 341
G+F +A KE+N ++ EG ++ Q++ + E ++ +S+++ +
Sbjct: 243 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVD 302
Query: 342 CLAEVDKCLVDGADEYLQL 360
+ E+D L +GA E +QL
Sbjct: 303 IIGEIDFRLTEGATEKIQL 321
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 248 bits (632), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 196/313 (62%), Gaps = 16/313 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI--SVSGVIPPEVVEG 287
EG+ + +A+ + +S+GD+R+AI LQ AA + I ++++ + + + P ++VE
Sbjct: 176 EGVEVKEDAIDLIYELSEGDMRKAINILQVAAA--TNKIVDRNVVAAAAAAIRPTDIVE- 232
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
LF + SGD+ A +++ ++ A + + F + + DE +A + + LA+VD
Sbjct: 233 LFNLALSGDYLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVD 292
Query: 348 KCLVDGADEYLQL 360
L GADE +QL
Sbjct: 293 YRLTQGADEEIQL 305
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 197/318 (61%), Gaps = 13/318 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L+ W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT ALA+ H
Sbjct: 3 LEEEILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVH 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
L+G Y+ LELNASD+RGI+V+R K+K FA G P+K+++LDEA
Sbjct: 63 DLYGDN-YRQYFLELNASDERGIDVIRNKVKEFARTVAGGN--------VPFKVVLLDEA 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT DAQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+
Sbjct: 114 DNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLA 173
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
+I E + D +AL T+ I+QGD+R+AI LQ A+ ++G +T + + V G+ P+
Sbjct: 174 YIAKNEKVEYDQKALETIYDITQGDMRKAINILQ-ASSVYG-KVTVEAVYKVLGLAQPKE 231
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQARICKC 342
+ + + G+F A +++ ++ G ++ Q+ V E +I D+ + +
Sbjct: 232 IREMIMLALQGNFLKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDY 291
Query: 343 LAEVDKCLVDGADEYLQL 360
+ EV+ +++GAD+ +QL
Sbjct: 292 IGEVEYRIMEGADDEIQL 309
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 193/319 (60%), Gaps = 17/319 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA Q+E + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T D
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPIGG--------APFKIIFLDEADALTAD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY S+IIEP+ SRCA +RF+ LS+E + R+ +I ++
Sbjct: 127 AQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQ 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGLF 289
GL++ L ++QGD+R+A+ LQ AA + SI+ + + + PE ++ L
Sbjct: 187 GLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLI 246
Query: 290 AVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETED-------ISDEQQARICK 341
G+F +A KE+N ++ EG ++ Q++ VV E ++ +++ +
Sbjct: 247 ETALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVD 306
Query: 342 CLAEVDKCLVDGADEYLQL 360
+ E D L +GA E +QL
Sbjct: 307 VIGETDFRLTEGASEKIQL 325
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/307 (42%), Positives = 185/307 (60%), Gaps = 12/307 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ HI
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L +A+ + +S+GD+R+AI LQ AA + + + S + +I P V LF
Sbjct: 176 EGIELRDDAIDLIYEVSEGDMRKAINLLQVAAAT-SKVVDANAVASATTMIRPADVVELF 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ +GD A +++ ++ A + + F + + DE +A I + LAEVD
Sbjct: 235 NLAFNGDVTKAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLAEVDYR 294
Query: 350 LVDGADE 356
L G+DE
Sbjct: 295 LTQGSDE 301
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 244 bits (624), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 133/311 (42%), Positives = 188/311 (60%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L +A++ + +S+GD+R+AI LQ AA + + V P +++E LF
Sbjct: 176 EGVELREDAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIE-LF 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ SGDF A +++ ++ A + F + I D+ +A I + LA+VD
Sbjct: 235 NLAISGDFVKAREKLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYR 294
Query: 350 LVDGADEYLQL 360
L GADE +QL
Sbjct: 295 LTQGADEEIQL 305
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 244 bits (623), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 190/312 (60%), Gaps = 12/312 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI V+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGIGVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ L +A+ + IS+GD+R+AI LQ AA + + + + V P +V+E LF
Sbjct: 176 EGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRPSDVLE-LF 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ GD A ++ ++ A + L ++F + + D+ +A + + L+EVD
Sbjct: 235 NLAMGGDLAKARDKLRELMYIKGVAGVDLIRVFQRELIRMQLDDDVKAEVAELLSEVDYR 294
Query: 350 LVDGADEYLQLL 361
L GADE +QL+
Sbjct: 295 LTQGADEEIQLM 306
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 191/319 (59%), Gaps = 17/319 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T D
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMGG--------APFKIIFLDEADALTSD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY S+IIEP+ SRCA +RF+ LS++ + R+ +I E+
Sbjct: 127 AQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQ 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSGVIPPEVVEGLF 289
L++ L ++QGD+R+A+ LQ AA + I+ + + + PE ++ L
Sbjct: 187 DLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLI 246
Query: 290 AVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETED-------ISDEQQARICK 341
G+F +A KE+N ++ EG ++ Q++ VV E ++ +S+ +
Sbjct: 247 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVD 306
Query: 342 CLAEVDKCLVDGADEYLQL 360
+ E D L +GA E +QL
Sbjct: 307 IIGETDFRLTEGASEKIQL 325
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 203/329 (61%), Gaps = 13/329 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + W+EKYRPK + +V Q++VV L + + T PH+LF G G GKTT A+A+A ++
Sbjct: 4 SPEIWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREM 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEAD 165
FG + + ELNASD+RGI+VVR +IK FA A +G +KI+ LDEAD
Sbjct: 64 FG-DTWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDA---------TFKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T+DAQ ALRRTME Y++ RF CNY S+II+P+ SRCA +RF+PL++E +S +
Sbjct: 114 ALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIAR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ +D A ++ +S GD+R+AI LQGAA + +T++++ +++ P+ +
Sbjct: 174 IAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAA-IVSDHVTAENIYAITSNAKPQEI 232
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
L A C GDF+ A + ++ ++ + G + LL+QL+ + +E + + + L
Sbjct: 233 TDLLARCLEGDFETAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLG 292
Query: 345 EVDKCLVDGADEYLQLLDVASNVIRAVCN 373
E D + +GAD +Q+ + + ++R+ N
Sbjct: 293 EADFRMSEGADADIQMDALLARIVRSGMN 321
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 189/312 (60%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + P+K+++LDEAD+MT D
Sbjct: 70 -YTEYFLELNASDERGIDVIRNKVKEFARTVIPGD--------IPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+++I E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
D +AL T+ I+ GD+R++I LQ AA +G I+ + + V G+ P+ V +
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQ-AASAYG-KISVEAVFKVLGLAQPKEVREMIN 238
Query: 291 VCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ G F A ++ +I G ++ Q+ + +E IS+E + + + E +
Sbjct: 239 LALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEF 298
Query: 349 CLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 299 RIIEGADDEIQL 310
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 238 bits (606), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 195/314 (62%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E LNL+ + + +S+GD+R+AI LQ AA + IT + + V+ P+ ++
Sbjct: 173 EKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAV-SDEITEEIVYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F A +++ N++ + G +L Q+F V DIS++++ + + + E
Sbjct: 232 MTQLALNGKFVEAREQLYNLMIDWGMSGEDILIQVFREVPNL-DISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+G++E +QL
Sbjct: 291 DFRIVEGSNERIQL 304
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 237 bits (605), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 192/313 (61%), Gaps = 14/313 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ D+ +QEE+ + L + +E N PH+LF GPPGTGKTT ALA+AH+L+G +
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG-D 62
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI+V+R K+K FA A +G P+KI+ LDEAD++T
Sbjct: 63 AWRENFLELNASDERGIDVIRHKVKEFARAKPIGD---------VPFKIVFLDEADALTR 113
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME YS+ TRF CNY S+IIEP+ SR F+FKPL +E + I
Sbjct: 114 DAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKG 173
Query: 230 EGLNLDA--EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
EGL L+ E ++ L I++GDLR+AI LQ AA + +IT L ++ + P+ ++
Sbjct: 174 EGLILENEDEIINALYDIAEGDLRKAINILQAAA-MMSKTITVDRLYEIASIAKPKEIDE 232
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ G+F A + +++ + + + + V + ISD ++ I + +++
Sbjct: 233 VLNKAMQGNFLEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIE 292
Query: 348 KCLVDGADEYLQL 360
+V+GAD+ +QL
Sbjct: 293 FRIVEGADDLVQL 305
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 189/312 (60%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +Q+E+V L ++ N PH+LF GPPGTGKTT ALA+ L+G
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA + P+K+I+LDEAD+MT D
Sbjct: 67 -YRQYFLELNASDERGIDVIRNKVKEFARTVASNN--------VPFKVILLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R++ I E
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNE 177
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ D + + T+ I+QGD+R+AI +Q AA +G IT + + V G+ P+ + +
Sbjct: 178 KVEFDPKGIETIFDITQGDMRKAINVIQ-AASAYG-KITVETVYKVLGLAQPKEIREMLH 235
Query: 291 VCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ SG F A ++ +I G ++ Q+ + E I D+ + + EV+
Sbjct: 236 LALSGKFLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEF 295
Query: 349 CLVDGADEYLQL 360
+++GAD+ +QL
Sbjct: 296 RIMEGADDEIQL 307
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 195/314 (62%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E L L+ + + +S+GD+R+AI LQ AA + ++T + + V+ P+ ++
Sbjct: 173 EKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAV-SDTVTEEIVYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F + +++ N++ + G +L Q+F V DIS++++ + + + E
Sbjct: 232 MTQLALNGKFVESREQLYNLMIDWGMSGEDILIQIFREVPNL-DISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+G++E +QL
Sbjct: 291 DFRIVEGSNERIQL 304
>sp|P53016|RFC4_CAEEL Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4
PE=1 SV=1
Length = 334
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 191/333 (57%), Gaps = 20/333 (6%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV K VL W EKYRPK + D+A+Q+EVV +L L+ + PH+LFYGPPGTGK
Sbjct: 6 EVDNKRPKVLT----WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGK 61
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+ ALA QLF ++ RVL+LNASD+RGI VVR KI++F+ ++G R
Sbjct: 62 TSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLK--- 118
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
KIIILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L
Sbjct: 119 LKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLP 178
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
E+ R+ IC+ EG + + L + S+GDLRRA+ LQ A + S +
Sbjct: 179 AEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGDDNARNCY 238
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIA------EGYPASLLLSQLFDVVVETE 329
+ G ++ VC+S + +V IIA + + + F +++ +
Sbjct: 239 LRGSSDSLLISN---VCKS----ILTADVPQIIALTKDITKSCTGVAFIRRCFQQLMDED 291
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
I+DE + K +A +K ++DG D LLD
Sbjct: 292 VINDENIGVMGKLVATCEKRILDGCDLENNLLD 324
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 195/314 (62%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E L L+ + + +S+GD+R+AI LQ AA + ++T + + V+ P+ ++
Sbjct: 173 EKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAV-SDTVTEEIVYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F A +++ N++ + G +L Q+F V DIS++++ + + + E
Sbjct: 232 MTHLALNGKFVEAKEQLYNLMIDWGMSGEDILIQVFREVPNL-DISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+G++E +QL
Sbjct: 291 DFRIVEGSNERIQL 304
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 195/314 (62%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E L L+ + + +S+GD+R+AI LQ AA + ++T + + V+ P+ ++
Sbjct: 173 EKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAV-SDTVTEEIVYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F A +++ N++ + G +L Q+F V DIS++++ + + + E
Sbjct: 232 MTQLALNGKFVEAREQLYNLMIDWGMSGEDILIQVFREVPNL-DISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+G++E +QL
Sbjct: 291 DFRIVEGSNERIQL 304
>sp|O94449|RFC4_SCHPO Replication factor C subunit 4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc4 PE=1 SV=1
Length = 342
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 182/311 (58%), Gaps = 9/311 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L + N PH++ G PG GKTT+ L +AH L GP
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 82 A-YKEGVLELNASDERGIDVVRNRIKAFA-------QKKVILPPGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L+++ + R+L+IC
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKA 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +N + L+ L ++GD+R+A+ LQ FG + +++ V+ P + +
Sbjct: 194 EKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFG-LVNGENVFRVADQPSPVAIHAML 252
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
C+SG+ D+A +++ I G+ A +++ +F VV + I + + + K + +
Sbjct: 253 TACQSGNIDVALEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMI 312
Query: 350 LVDGADEYLQL 360
+++G LQL
Sbjct: 313 ILEGVQTLLQL 323
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 232 bits (592), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 196/325 (60%), Gaps = 15/325 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + WVEKYRP+ + ++ QEE+V+ L ++ N PH+LF GPPGTGKTT ALA+AH L
Sbjct: 2 SEELWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEAD 165
+G E ++ LELNASD+RGI+V+R++IK +A + +G P+K++ILDEAD
Sbjct: 62 YG-ESWRDNTLELNASDERGIDVIRSRIKDYARTLPIGD---------VPFKLVILDEAD 111
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQ ALRRTME +S+ TRF I NY S+IIEP+ SRCA FRF+PL + R+
Sbjct: 112 NMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRW 171
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ +D AL + SQGDLR+AI LQ AA ++T + + + G + P+ V
Sbjct: 172 IAQQEGITVDDGALEAIWEESQGDLRKAINTLQ-AASAISRNVTEEVVYAALGRVKPKEV 230
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDI--SDEQQARICKC 342
+ G+ A ++ ++ G ++ + V+ + + D A +
Sbjct: 231 REMIESALKGNLLEARDKLRLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVL 290
Query: 343 LAEVDKCLVDGADEYLQLLDVASNV 367
+ E + +V+G+D+ +QL+ + S +
Sbjct: 291 VGETNYRIVEGSDDEIQLMALLSKL 315
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 178/325 (54%), Gaps = 8/325 (2%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
KM S+ PWVEKYRP ++ ++ E++V+ LT +E PH+LFYGPPGTGKTTT
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPP 155
LA A Q++ P S VLELNASD+RGI+VVR I FA A + G P
Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTV---P 136
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY++ I+ + SRC +FRF PL
Sbjct: 137 FKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLD 196
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
++++ R+ +I E L + + L +S+GD+R I LQ A F + +
Sbjct: 197 QKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQC 256
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQ 335
+ P E+ E + + N + GY +++ L D V T DI DE
Sbjct: 257 IGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVF-TLDIPDEA 315
Query: 336 QARICKCLAEVDKCLVDGADEYLQL 360
+ I L EV++ L G QL
Sbjct: 316 MSAIITGLGEVEENLSTGCSNETQL 340
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 229 bits (583), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 182/319 (57%), Gaps = 14/319 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL +E + +R+ +I +
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL + +QGD+RRAI LQ AA G IT + + G++ P ++
Sbjct: 176 EGVKISDDALEAIYEFTQGDMRRAINALQIAATT-GKEITEETVAKALGMVSPRLLRETL 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G+F A ++ + +G L ++ QL ++ D+ + + I +AE
Sbjct: 235 NDAFRGNFGKAATQIYGFVVDGGIGELEIVKQLHREALKL-DVPEYLKPEIAYIIAEAHY 293
Query: 349 CLVDGADEYLQLLDVASNV 367
++ GA Q+ + +
Sbjct: 294 AILRGAHGLTQIYGALAKI 312
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 228 bits (581), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 184/321 (57%), Gaps = 14/321 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+S IIEP+ SR RF PL +E + +R+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL + +QGD+RRAI LQ AA + ++T + + G++ P ++
Sbjct: 176 EGVKVSDDALEAIYEFTQGDMRRAINALQIAATV-SKAVTEEVVAKALGMVSPRLLRETL 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G F A ++ +A+G L ++ Q+ ++ D+ + + I +AE
Sbjct: 235 YEAVKGSFGKAATQIYGFVADGGVGELEIIKQIHREMLRL-DVQEYVKPEIAYIIAEAHY 293
Query: 349 CLVDGADEYLQLLDVASNVIR 369
++ GA Q+ + V R
Sbjct: 294 AILRGAHGLTQIYGALAKVRR 314
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 228 bits (581), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 190/314 (60%), Gaps = 14/314 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V +E+++ L N +E + PH+LF G PG GKTT AL +A L+G
Sbjct: 3 KPWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+K LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -NTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG 287
+E +N++ + + +S+GD+R+AI LQ A + +I + V+ P+ ++
Sbjct: 173 EKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAAV-SKNINETVIYKVASKARPDEIKK 231
Query: 288 LFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEV 346
+ + +G F A +++ ++ + G ++ Q+F V E IS++++ + + + E
Sbjct: 232 MTELALNGKFVEAREQLYKLMIDWGMSGEDIIIQIFREVPNLE-ISEKEKVHLVEAIGEC 290
Query: 347 DKCLVDGADEYLQL 360
D +V+GA+E +QL
Sbjct: 291 DFRIVEGANERIQL 304
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 228 bits (580), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 182/313 (58%), Gaps = 13/313 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EE + L + L L + GD+R+AI LQ AA + G ++ + +++ PE + +
Sbjct: 184 EEDIELTEDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTM 242
Query: 289 FAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
GDF + ++ ++ EG ++ QL + E DI D+ R+ + + E D
Sbjct: 243 VQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDDAAVRVLERIGETD 301
Query: 348 KCLVDGADEYLQL 360
+ GA+E +QL
Sbjct: 302 YRITRGANERVQL 314
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 228 bits (580), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 189/311 (60%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ ++D+ Q+E++ L + + PH+LF G GTGKTT A+A+A + FG E
Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFG-E 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ ELNASD+RGI+VVR +IK FA R + +KI+ LDEAD++T D
Sbjct: 67 DWQMNFRELNASDERGIDVVRNQIKQFA--------RTSPFGGSTFKILFLDEADALTTD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTMETY++ RF CNY ++II+P+ SRCA +RF+PL + +S V I ++
Sbjct: 119 AQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQ 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
L + E + + ++QGD+R+AI LQGAA + G I+ + +++ PE ++ L
Sbjct: 179 NLTVTEEVIDAIFYVAQGDMRKAINALQGAA-ILGRDISPDMIFAITATARPEEIDDLID 237
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ +G+F A + ++ + G L+SQL+ VV+ D+ + + R+ L E D
Sbjct: 238 LSLAGNFLGAGSSLQALLHDRGIAPQELISQLYRAVVK-RDLPEAVKVRLIDSLGETDFR 296
Query: 350 LVDGADEYLQL 360
L +GA +Q+
Sbjct: 297 LSEGAGSDIQM 307
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 185/311 (59%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP++++DV ++ L + ++ + PH+LF GP GTGKT ++++IA +L+G +
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEAD++T+D
Sbjct: 72 -WQDNFLELNASDERGIDVVRDRIKDFA---------RSSFGGHNYRVIFLDEADALTDD 121
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L ++ +++ + I E
Sbjct: 122 AQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETE 181
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
GL + + L + GD+RRAI LQ AA G S+ + + +++ PE +E +
Sbjct: 182 GLEHTDDGIDALVYAADGDMRRAINALQ-AASATGDSVNEETVYAITATARPEEIETMVT 240
Query: 291 VCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A +++++ G ++ Q+ V E D+ + R+ L E D
Sbjct: 241 EALGGDFAAARATLDDLLTNRGLAGGDIIDQVHRSVWEF-DVEEAAAVRLLDRLGEADYR 299
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 300 IAEGANERVQL 310
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 185/311 (59%), Gaps = 13/311 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP++++DV ++ L + ++ + PH+LF GP GTGKT ++++IA +L+G +
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEAD++T+D
Sbjct: 72 -WQDNFLELNASDERGIDVVRDRIKDFA---------RSSFGGHNYRVIFLDEADALTDD 121
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L ++ +++ + I E
Sbjct: 122 AQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETE 181
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
GL + + L + GD+RRAI LQ AA G S+ + + +++ PE +E +
Sbjct: 182 GLEHTDDGIDALVYAADGDMRRAINALQ-AASATGDSVNEETVYAITATARPEEIETMVT 240
Query: 291 VCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A +++++ G ++ Q+ V E D+ + R+ L E D
Sbjct: 241 EALGGDFAAARATLDDLLTNRGLAGGDIIDQVHRSVWEF-DVEEAAAVRLLDRLGEADYR 299
Query: 350 LVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 300 IAEGANERVQL 310
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 182/321 (56%), Gaps = 14/321 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL +E + SR+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL T+ +QGD+R+AI LQ AA IT + G++ P ++
Sbjct: 176 EGVKISDDALETIYEFTQGDMRKAINALQIAAAT-EKEITEDVVARALGMVSPRLLRETL 234
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
G+F A ++ + +G L ++ Q+ V+ D+ + + + +AE
Sbjct: 235 QEALKGNFSKAMTQIYGFVVDGGVGELEIIRQIHREVLRL-DVPEYVKPELAYIIAEAHY 293
Query: 349 CLVDGADEYLQLLDVASNVIR 369
+ GA Q+ + + R
Sbjct: 294 ATLRGARGLTQIFGALAKIRR 314
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 189/318 (59%), Gaps = 14/318 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + W EKYRP++++DV +++ R L + +++ N PH+LF GPPG GKT A+A+A
Sbjct: 1 MAEDEIWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDE 163
+L+G E + S +ELNASD+RGI+VVR IK FA A +G + +KII LDE
Sbjct: 61 ELYG-ETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK---------FKIIFLDE 110
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD++T DAQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF PL+ +++ +
Sbjct: 111 ADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGI 170
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPE 283
I EGL ++ + + L +++GD+RRAI LQ AA + IT+ + + P+
Sbjct: 171 TRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATI-AKDITADVIYQTTSTAKPK 229
Query: 284 VVEGLFAVCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKC 342
+E + + +G F D NK +I G + ++ Q++ + E + ++ +
Sbjct: 230 EIEDMLKLALNGQFMDSRNKLDELLITYGLSGTDIIDQIYRSMFEL-GLDEDVLVALVDR 288
Query: 343 LAEVDKCLVDGADEYLQL 360
+ E D L +GA E +Q+
Sbjct: 289 IGEADFRLTEGASERIQI 306
>sp|Q5UQ72|RFCS4_MIMIV Putative replication factor C small subunit L510 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1
Length = 363
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 194/358 (54%), Gaps = 40/358 (11%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRPK+++D+ + ++ + N+ + H LFYGPPGTGKT+ LA+ ++F
Sbjct: 6 SVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIF 65
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E +++RV+E NASDDRGIN VR KI A V + G P YKIIILDEADSM
Sbjct: 66 -KEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK LS+E M ++ I
Sbjct: 125 TDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDIS 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG---------------------- 265
+E + L L T+ +S GD+R+AI LQ +
Sbjct: 185 LKESMELPKNILHTIIDVSNGDMRKAIMLLQNFKYTYNFKKNLTKKLKDMTLLELKTILF 244
Query: 266 --------SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLAN-KEVNN----IIAEGY 312
S+I+ +D+ +S I + +G+ D N EV+N IIA G+
Sbjct: 245 MTKKSSITSTISEEDVYEISASITLDKAKGII----DDTIDCNNIVEVSNLSKKIIAMGF 300
Query: 313 PASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370
P +L+QL ++E+ + Q ++I ++ + + +EY+QLL+ + V R
Sbjct: 301 PIDNILTQLNKCILESNKLDVNQISKIIIYSGDILLKMKECGNEYIQLLNYLAYVNRV 358
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 221 bits (563), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 189/316 (59%), Gaps = 12/316 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S W+EKYRP ++ D+ Q+++V L++ +++ N PH+LF G G GKTT A+ +A +
Sbjct: 3 ESHTIWIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLARE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
FG + ++ ELNASD+RGI+VVR +IK FA R G +KI+ LDEAD
Sbjct: 63 FFG-DSWQMNFRELNASDERGIDVVRNQIKEFART------RPAGDAA--FKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T DAQ ALRRTME+Y+K RF CNY S+II+P+ SRCA +RF+PL + + +
Sbjct: 114 ALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I E L++ EA+ + I+QGD+R+AI LQGAA + ++I + + +++ PE +
Sbjct: 174 IAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAA-ILSATIEAPMVYAITSNARPEEI 232
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344
L + SGDFD A + ++ E G + L++Q + + + D+ + + L
Sbjct: 233 GELLTLSLSGDFDGAEALLTRLLRERGIAPNELINQCYRALTK-RDMDRVLKVELIDALG 291
Query: 345 EVDKCLVDGADEYLQL 360
E D L +GA +Q+
Sbjct: 292 ETDFRLSEGASSDIQM 307
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 184/311 (59%), Gaps = 12/311 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+++ ++ Q+++V L + ++T N PH+LF G G GKTT A+A+A + FG
Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+++ E+NASD+RGI+VVR +IK FA + +G +KI+ LDEAD++T D
Sbjct: 68 -WQTNFREMNASDERGIDVVRNQIKEFARTSPLAG--------ATFKILFLDEADALTTD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTMETY++ RF CNY S+II+P+ SRCA +RF+PL E + I E
Sbjct: 119 AQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
GL + AL + ++ GD+R+AI LQGAA + + I + + ++ PE ++ L
Sbjct: 179 GLTVTEGALDAIVYVASGDMRKAINALQGAA-ILRTDIDEETIFEITATARPEEIDELLD 237
Query: 291 VCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
+ G FD A + + + G + L++Q + +V+ DI + ++ L E D
Sbjct: 238 LSIGGRFDEAEQALLELTHVRGIAPNELINQCYRALVQ-RDIDRTLKVKLIDALGETDFR 296
Query: 350 LVDGADEYLQL 360
L +GA +Q+
Sbjct: 297 LSEGASSDIQM 307
>sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=Dictyostelium discoideum
GN=rfc5 PE=3 SV=1
Length = 347
Score = 218 bits (555), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 187/315 (59%), Gaps = 10/315 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK + D+ E++ + +T ++ PH+LFYGPPGTGKT+T AIA +L+
Sbjct: 23 SLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLY 82
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G Y VLELNASDDRGI+VVR +IKTFA+ PYK+IILDEADSM
Sbjct: 83 GDN-YSRMVLELNASDDRGIDVVREQIKTFASSMFFFNT------TVPYKLIILDEADSM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRR +E Y+K TRF +CNY+ +II L SRC +FRF PL R+ I
Sbjct: 136 TNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEII 195
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA-RLFGSSITSKDLISVSGVIPPEVVE 286
+E + +D++A++ + + GD+R+ + LQ + ++IT + + +G P +E
Sbjct: 196 EKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIE 255
Query: 287 GLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ + D++ A + ++++ +G + +++ L VV+ D+ + ++ L++
Sbjct: 256 LMVDWLLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQI-DLDNVILCKLLSHLSD 314
Query: 346 VDKCLVDGADEYLQL 360
++ L G+ E LQL
Sbjct: 315 IEYNLSIGSSEKLQL 329
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 218 bits (554), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 177/305 (58%), Gaps = 13/305 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ E + L + + PH+LF GP G GKTT A AIA +++G +
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK+FA + G GY ++II LDEAD++T D
Sbjct: 74 -WRENFLELNASDQRGIDVVRDRIKSFARASFG------GYD---HRIIFLDEADALTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL + + ++ I + E
Sbjct: 124 AQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G+ L + + L + GD+R+AI LQ AA + G ++ + + +++ PE + +
Sbjct: 184 GIELTDDGVDALVYAADGDMRKAINGLQAAA-VMGGTVDEEAVYTITSTARPEEIREMVT 242
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
GDF A ++ ++ + G ++ QL V E D+ + + ++ + + E D
Sbjct: 243 EAMDGDFTAARSQLETLLTDVGIAGGDIIDQLHRSVWEF-DLEEREAVQLMERIGEADYR 301
Query: 350 LVDGA 354
+ GA
Sbjct: 302 ITAGA 306
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 218 bits (554), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 186/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A + + + +G +L+++ + V D + + +A+++
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEI-HLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 349 CLVDGADEYLQL 360
L G +E +QL
Sbjct: 311 RLSVGTNEKIQL 322
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 185/312 (59%), Gaps = 11/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G + +
Sbjct: 192 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANIL 250
Query: 290 AVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ DF A K + + +G +L+++ + V D + + +A+++
Sbjct: 251 DWMLNQDFTTAYKNIMELKTLKGLALHDILTEV-HLFVHRVDFPSSVRIHLLTKMADIEY 309
Query: 349 CLVDGADEYLQL 360
L G E +QL
Sbjct: 310 RLSVGTSEKIQL 321
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 186/319 (58%), Gaps = 17/319 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++S PWVEKYRP + +VA E V+ + +E PH+LF+GPPGTGKTTT +A+A Q
Sbjct: 14 ENSLPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQ 73
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDE 163
++G Y++ +LELNASD+RGI+VVR +IKTFA+ SG +K++ILDE
Sbjct: 74 IYGKN-YRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----------FKLVILDE 122
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT AQNALRR +E YS TRF + NY ++ L SRC +FRF PL E+ + R+
Sbjct: 123 ADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRL 182
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG--AARLFGSSITSKDLISVSGVIP 281
H+ +E ++L EA +L +S GD+RRA+ LQ A+ G I+ + + G
Sbjct: 183 AHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPR 242
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P + + G ++ A + I ++G + +L+ F V + D+ ++ + +
Sbjct: 243 PADIRTVLQAVLDGSWESALHTFSYIKQSKGLALADMLTA-FAVEFQKLDLQNKTRIALL 301
Query: 341 KCLAEVDKCLVDGADEYLQ 359
L+E++ L G +E +Q
Sbjct: 302 DGLSEIEWRLSSGGNESIQ 320
>sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rfcS PE=3 SV=2
Length = 318
Score = 216 bits (549), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 186/312 (59%), Gaps = 15/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ ++E ++ L + +E PH+LF G GTGKT+TA+A+A +LFG +
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFG-D 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP--YKIIILDEADSMT 168
+K ++E+NAS++ GI+V+R KIK A + P P +KI+ LDEAD +T
Sbjct: 64 SWKENMVEMNASNENGIDVIRNKIKDIARIK----------PSNPLGFKILFLDEADQLT 113
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+AQ ALRRTME YS+ TRF F CNY S+II P+ SR RF+P+ +E +S ++ I
Sbjct: 114 AEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAK 173
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EG +D E++ L +S GD+R+AI LQ A I+ K + + G PE ++ +
Sbjct: 174 NEGFQIDEESMHALVEVSAGDMRKAINVLQ--AVYTSGEISPKKIYEIIGYASPEKIQKM 231
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +G FD A + V+ ++ + + + + V + IS +Q+ I K LA+ +
Sbjct: 232 ISRAINGLFDEAREIVDGMLIYDGLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEF 291
Query: 349 CLVDGADEYLQL 360
+V+G+++ +QL
Sbjct: 292 RIVEGSNDRIQL 303
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 183/312 (58%), Gaps = 15/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ ++E ++ L + +E PH+LF G GTGKT+TA+A+A +LFG E
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG-E 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP--YKIIILDEADSMT 168
+K +E+NAS++ GI+V+R KIK A + P P +KI+ LDEAD +T
Sbjct: 64 SWKENFIEMNASNENGIDVIRNKIKDIARI----------RPSNPLGFKILFLDEADQLT 113
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+AQ ALRRTME YS+ TRF F CNY S+II P+ SR RF+P+ +E + ++ I
Sbjct: 114 AEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAK 173
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
EG +D E++ + +S GD+R+AI LQ A I+ K + + G PE V L
Sbjct: 174 NEGFTIDDESMEAMVEVSGGDMRKAINVLQ--AVYTSGEISPKKIYEIIGYASPESVNKL 231
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +G FD A + V+ ++ E + + + + +V + +Q+ I K LA+ +
Sbjct: 232 ISRAINGLFDEARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEF 291
Query: 349 CLVDGADEYLQL 360
+V+G+++ +QL
Sbjct: 292 RIVEGSNDRIQL 303
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 214 bits (546), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 182/317 (57%), Gaps = 19/317 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ QE ++ L +E + P+++F GP G GKTT ALA+A ++ G
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILG- 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD RGI+ VRT IK F + VG+ P++II LDE D+MT
Sbjct: 66 EYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGA----------PFRIIFLDEVDNMT 115
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRR ME Y+K + F CNY S+II+P+ SRCA FRF PL + R+ +I
Sbjct: 116 KDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAE 175
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288
+E L +A AL T+ ++GDLR+AI LQ AA L G IT + V P+ V +
Sbjct: 176 KENLEYEAHALETIVYFAEGDLRKAINLLQSAASL-GEKITESSIYDVVSRARPKDVRKM 234
Query: 289 FAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFD----VVVETEDISDEQQARICKCL 343
G F A + I + +G +++Q++ + +E E + ++ + +
Sbjct: 235 IKTILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGE-VDGDRYVGLIDAI 293
Query: 344 AEVDKCLVDGADEYLQL 360
E D + +GA+ +QL
Sbjct: 294 GEYDFRIREGANPRIQL 310
>sp|P53034|RFC2_DROME Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4
PE=2 SV=1
Length = 331
Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 184/331 (55%), Gaps = 18/331 (5%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PEK+ D+ + S PW+EKYRP + K++ E+ V L+ N P+++ G
Sbjct: 5 PEKTADDKR--------SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ + E LN + L + +QGD+R+ + LQ A+ FG IT
Sbjct: 169 RFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-DIT 227
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
++++ V P+++E + C + D A K + + GY +++ +F V
Sbjct: 228 AENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRI- 286
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+I + + + + ++DG + LQL
Sbjct: 287 NIDEHLKLDFIREIGITHMKIIDGINSLLQL 317
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,727,854
Number of Sequences: 539616
Number of extensions: 5505485
Number of successful extensions: 24976
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 470
Number of HSP's that attempted gapping in prelim test: 23232
Number of HSP's gapped (non-prelim): 1702
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)