Query 016800
Match_columns 382
No_of_seqs 330 out of 3318
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:55:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0989 Replication factor C, 100.0 1E-53 2.2E-58 364.4 31.5 323 47-371 22-345 (346)
2 KOG0991 Replication factor C, 100.0 1.5E-53 3.3E-58 348.9 27.3 315 47-371 13-327 (333)
3 PLN03025 replication factor C 100.0 1.1E-49 2.4E-54 364.1 37.1 315 49-373 1-315 (319)
4 PRK14956 DNA polymerase III su 100.0 9E-48 2E-52 356.9 35.9 314 46-369 3-368 (484)
5 PRK08451 DNA polymerase III su 100.0 6.2E-47 1.3E-51 358.5 38.4 312 49-372 2-337 (535)
6 PRK06305 DNA polymerase III su 100.0 5.6E-47 1.2E-51 358.0 37.9 321 47-377 3-356 (451)
7 PRK07003 DNA polymerase III su 100.0 3.9E-47 8.4E-52 364.3 36.6 314 47-370 2-358 (830)
8 PRK14952 DNA polymerase III su 100.0 9.2E-47 2E-51 362.6 38.0 310 50-369 2-362 (584)
9 PRK14958 DNA polymerase III su 100.0 7.7E-47 1.7E-51 360.7 36.0 314 47-370 2-356 (509)
10 PRK14949 DNA polymerase III su 100.0 9.6E-47 2.1E-51 368.2 37.3 315 47-371 2-358 (944)
11 PRK14964 DNA polymerase III su 100.0 1.2E-46 2.6E-51 353.7 36.5 310 50-370 2-354 (491)
12 PRK14965 DNA polymerase III su 100.0 8E-47 1.7E-51 367.2 36.4 314 47-370 2-361 (576)
13 PRK14971 DNA polymerase III su 100.0 2.9E-46 6.2E-51 363.9 37.6 317 46-372 2-364 (614)
14 PRK12323 DNA polymerase III su 100.0 1.6E-46 3.4E-51 356.0 34.6 314 47-370 2-363 (700)
15 PRK14961 DNA polymerase III su 100.0 6.6E-46 1.4E-50 344.1 37.5 314 47-370 2-360 (363)
16 PRK05563 DNA polymerase III su 100.0 5.1E-46 1.1E-50 359.9 38.1 314 47-370 2-360 (559)
17 PRK09111 DNA polymerase III su 100.0 9.2E-46 2E-50 357.7 38.1 316 46-371 9-375 (598)
18 PRK14954 DNA polymerase III su 100.0 8.4E-46 1.8E-50 358.2 37.3 315 47-371 2-374 (620)
19 PRK06645 DNA polymerase III su 100.0 1.6E-45 3.4E-50 349.1 38.4 315 46-370 6-371 (507)
20 PRK14960 DNA polymerase III su 100.0 9.5E-46 2.1E-50 351.6 36.4 313 48-370 2-358 (702)
21 PRK07133 DNA polymerase III su 100.0 1E-45 2.2E-50 358.4 37.1 318 46-373 3-358 (725)
22 PRK07764 DNA polymerase III su 100.0 8.1E-46 1.8E-50 368.7 37.4 312 50-371 4-366 (824)
23 PRK14955 DNA polymerase III su 100.0 1E-45 2.2E-50 346.6 35.8 319 48-376 3-379 (397)
24 PRK07994 DNA polymerase III su 100.0 1.3E-45 2.8E-50 356.1 37.2 314 47-370 2-359 (647)
25 PRK14951 DNA polymerase III su 100.0 1.7E-45 3.6E-50 354.9 36.4 314 47-370 2-364 (618)
26 PRK06647 DNA polymerase III su 100.0 2.1E-45 4.5E-50 354.0 36.2 319 47-375 2-363 (563)
27 PRK08691 DNA polymerase III su 100.0 5.7E-45 1.2E-49 349.6 36.5 314 47-370 2-358 (709)
28 PRK14959 DNA polymerase III su 100.0 6.6E-45 1.4E-49 348.0 36.5 314 47-370 2-362 (624)
29 COG2812 DnaX DNA polymerase II 100.0 1E-45 2.2E-50 345.6 29.6 315 47-371 2-361 (515)
30 PRK14957 DNA polymerase III su 100.0 1.8E-44 3.9E-49 343.6 37.5 314 47-370 2-358 (546)
31 PRK14953 DNA polymerase III su 100.0 2.3E-44 5E-49 341.9 37.7 313 47-370 2-354 (486)
32 PRK00440 rfc replication facto 100.0 1.4E-43 2.9E-48 326.3 38.8 314 46-370 2-316 (319)
33 TIGR02397 dnaX_nterm DNA polym 100.0 5.4E-44 1.2E-48 333.6 36.5 310 49-368 2-355 (355)
34 PRK14963 DNA polymerase III su 100.0 2.8E-43 6E-48 335.5 38.3 309 51-371 4-342 (504)
35 PRK14962 DNA polymerase III su 100.0 3.5E-43 7.5E-48 332.3 36.8 312 49-370 2-333 (472)
36 PRK14970 DNA polymerase III su 100.0 5.6E-43 1.2E-47 327.0 37.8 315 46-370 2-349 (367)
37 PRK14969 DNA polymerase III su 100.0 2.6E-43 5.7E-48 338.7 36.1 314 47-370 2-358 (527)
38 PRK14950 DNA polymerase III su 100.0 5.4E-43 1.2E-47 342.3 37.5 312 48-369 3-360 (585)
39 PRK14948 DNA polymerase III su 100.0 7.6E-43 1.7E-47 339.8 37.9 313 47-370 2-362 (620)
40 PRK05896 DNA polymerase III su 100.0 1.8E-42 3.9E-47 329.6 36.1 271 47-327 2-291 (605)
41 PRK12402 replication factor C 100.0 6.8E-42 1.5E-46 317.4 36.8 306 49-367 3-336 (337)
42 KOG2035 Replication factor C, 100.0 1.9E-40 4E-45 278.7 30.7 315 50-373 2-345 (351)
43 COG2256 MGS1 ATPase related to 100.0 7.5E-39 1.6E-43 283.5 30.7 299 49-368 12-335 (436)
44 KOG0990 Replication factor C, 100.0 1E-38 2.2E-43 274.1 22.8 322 45-372 25-352 (360)
45 PHA02544 44 clamp loader, smal 100.0 2E-36 4.2E-41 277.9 35.9 300 45-371 5-313 (316)
46 PRK04132 replication factor C 100.0 2.2E-35 4.8E-40 291.8 34.1 275 85-370 567-844 (846)
47 PRK05564 DNA polymerase III su 100.0 4.4E-35 9.5E-40 267.4 31.0 282 58-369 1-312 (313)
48 PRK13342 recombination factor 100.0 2.3E-34 4.9E-39 271.8 31.0 297 50-368 1-316 (413)
49 PRK13341 recombination factor 100.0 7.7E-34 1.7E-38 280.1 31.9 302 47-368 14-344 (725)
50 KOG2028 ATPase related to the 100.0 1.3E-33 2.8E-38 246.0 25.2 297 44-357 121-453 (554)
51 PRK07399 DNA polymerase III su 100.0 1.2E-32 2.7E-37 248.4 29.4 273 59-369 2-312 (314)
52 PRK04195 replication factor C 100.0 8.2E-33 1.8E-37 266.0 29.9 296 49-367 2-310 (482)
53 PRK07993 DNA polymerase III su 100.0 1.8E-32 3.8E-37 249.2 28.7 291 66-375 7-327 (334)
54 PRK07940 DNA polymerase III su 100.0 1.9E-32 4.2E-37 253.5 28.7 298 59-371 3-393 (394)
55 PRK08058 DNA polymerase III su 100.0 1.5E-31 3.2E-36 244.5 25.2 292 59-368 3-327 (329)
56 PRK05707 DNA polymerase III su 100.0 1.2E-30 2.6E-35 236.7 30.1 285 72-373 11-327 (328)
57 PRK06871 DNA polymerase III su 100.0 5.4E-30 1.2E-34 230.3 28.9 287 66-371 7-323 (325)
58 PRK09112 DNA polymerase III su 100.0 2.3E-29 5E-34 230.1 32.7 295 54-373 16-350 (351)
59 PRK07471 DNA polymerase III su 100.0 1.5E-29 3.2E-34 232.6 31.1 297 55-370 13-363 (365)
60 PRK08769 DNA polymerase III su 100.0 2.3E-29 4.9E-34 226.0 29.4 279 66-377 9-316 (319)
61 PRK06964 DNA polymerase III su 100.0 7E-29 1.5E-33 224.7 30.3 280 66-371 6-341 (342)
62 PRK05917 DNA polymerase III su 100.0 1.2E-28 2.7E-33 216.5 28.4 259 67-374 3-280 (290)
63 PF05496 RuvB_N: Holliday junc 100.0 2E-29 4.3E-34 210.1 18.6 196 46-263 9-228 (233)
64 PRK06090 DNA polymerase III su 100.0 7.2E-28 1.6E-32 216.1 29.0 281 66-371 8-317 (319)
65 PRK07132 DNA polymerase III su 100.0 2.1E-26 4.5E-31 205.3 30.8 279 68-372 3-299 (299)
66 PRK07276 DNA polymerase III su 100.0 6.3E-26 1.4E-30 200.3 28.0 262 65-365 6-290 (290)
67 COG0470 HolB ATPase involved i 100.0 1.9E-26 4E-31 213.0 24.9 291 61-372 1-319 (325)
68 PRK08699 DNA polymerase III su 99.9 5.5E-25 1.2E-29 199.5 29.4 279 66-373 6-323 (325)
69 PRK00080 ruvB Holliday junctio 99.9 3.2E-25 7E-30 203.8 22.6 209 47-277 11-247 (328)
70 PF13177 DNA_pol3_delta2: DNA 99.9 7.4E-26 1.6E-30 185.7 15.8 141 65-215 1-162 (162)
71 TIGR00678 holB DNA polymerase 99.9 2.5E-25 5.4E-30 188.4 17.3 167 71-253 2-188 (188)
72 COG2255 RuvB Holliday junction 99.9 1.6E-24 3.5E-29 184.0 19.2 205 51-277 16-248 (332)
73 PRK07452 DNA polymerase III su 99.9 2.9E-23 6.2E-28 191.3 27.3 276 82-371 1-325 (326)
74 PRK05907 hypothetical protein; 99.9 1.3E-22 2.8E-27 182.5 30.1 276 70-369 7-310 (311)
75 PRK05629 hypothetical protein; 99.9 6.6E-23 1.4E-27 187.6 28.4 273 83-370 7-316 (318)
76 PRK07914 hypothetical protein; 99.9 1E-22 2.2E-27 186.3 29.5 275 83-372 6-318 (320)
77 TIGR02902 spore_lonB ATP-depen 99.9 8.9E-24 1.9E-28 204.5 21.4 233 47-280 51-332 (531)
78 TIGR00635 ruvB Holliday juncti 99.9 2E-23 4.3E-28 190.7 21.6 199 58-278 1-227 (305)
79 KOG1969 DNA replication checkp 99.9 6.5E-23 1.4E-27 193.7 25.0 216 49-276 259-533 (877)
80 PRK05818 DNA polymerase III su 99.9 1.8E-22 3.8E-27 173.6 20.9 162 81-260 5-194 (261)
81 PRK06585 holA DNA polymerase I 99.9 4.3E-21 9.3E-26 178.0 30.1 283 73-370 9-337 (343)
82 PRK08487 DNA polymerase III su 99.9 3.3E-20 7.1E-25 170.3 31.0 282 71-373 4-328 (328)
83 PRK05574 holA DNA polymerase I 99.9 2.8E-20 6.2E-25 172.7 30.8 284 71-369 6-338 (340)
84 TIGR01128 holA DNA polymerase 99.9 1.4E-20 3E-25 171.9 27.4 256 99-368 4-302 (302)
85 PRK08084 DNA replication initi 99.9 9.4E-21 2E-25 165.4 20.8 200 58-278 19-234 (235)
86 TIGR00602 rad24 checkpoint pro 99.9 4.2E-21 9.2E-26 186.4 18.5 212 46-262 69-329 (637)
87 PRK06893 DNA replication initi 99.9 2.8E-20 6.1E-25 161.9 19.5 201 57-278 12-228 (229)
88 PRK08727 hypothetical protein; 99.9 1E-19 2.2E-24 158.7 21.3 208 50-278 7-229 (233)
89 PTZ00112 origin recognition co 99.9 3.3E-19 7.2E-24 173.4 26.3 229 47-278 744-1004(1164)
90 PRK08903 DnaA regulatory inact 99.8 1.2E-19 2.7E-24 158.4 20.0 197 57-278 14-224 (227)
91 TIGR02928 orc1/cdc6 family rep 99.8 7.5E-18 1.6E-22 158.0 32.0 232 46-280 3-274 (365)
92 COG1223 Predicted ATPase (AAA+ 99.8 1.1E-19 2.4E-24 152.5 16.6 177 55-248 115-317 (368)
93 TIGR03420 DnaA_homol_Hda DnaA 99.8 1.6E-19 3.6E-24 157.7 18.6 200 57-277 11-225 (226)
94 TIGR02881 spore_V_K stage V sp 99.8 1.3E-19 2.8E-24 161.2 18.0 191 59-262 4-236 (261)
95 PF03215 Rad17: Rad17 cell cyc 99.8 3E-19 6.6E-24 170.6 20.5 211 46-262 4-269 (519)
96 PRK00411 cdc6 cell division co 99.8 4.8E-18 1E-22 160.9 28.2 233 44-280 16-282 (394)
97 TIGR02903 spore_lon_C ATP-depe 99.8 1.2E-18 2.6E-23 171.3 24.1 231 49-281 142-431 (615)
98 PRK06581 DNA polymerase III su 99.8 2E-18 4.3E-23 145.1 21.7 179 70-261 2-192 (263)
99 KOG1970 Checkpoint RAD17-RFC c 99.8 1.6E-18 3.4E-23 159.8 22.5 210 46-261 67-320 (634)
100 PRK05642 DNA replication initi 99.8 5.3E-18 1.2E-22 147.9 20.7 204 54-278 11-233 (234)
101 PRK06620 hypothetical protein; 99.8 4.4E-18 9.5E-23 145.9 19.7 190 50-277 8-213 (214)
102 CHL00181 cbbX CbbX; Provisiona 99.8 4.4E-18 9.5E-23 152.3 18.5 190 61-263 23-253 (287)
103 COG1466 HolA DNA polymerase II 99.8 1.9E-16 4.2E-21 145.6 28.7 283 73-370 6-332 (334)
104 COG1474 CDC6 Cdc6-related prot 99.8 4.4E-17 9.5E-22 149.9 24.3 238 47-288 6-273 (366)
105 TIGR02639 ClpA ATP-dependent C 99.8 3.2E-17 7E-22 165.4 24.4 218 48-277 169-426 (731)
106 PRK14087 dnaA chromosomal repl 99.8 1.3E-16 2.9E-21 151.4 26.7 208 57-279 111-347 (450)
107 COG1222 RPT1 ATP-dependent 26S 99.8 3.3E-17 7.1E-22 144.1 19.4 198 58-277 148-389 (406)
108 PRK09087 hypothetical protein; 99.8 1.8E-17 3.8E-22 143.4 16.9 188 59-278 19-220 (226)
109 TIGR02880 cbbX_cfxQ probable R 99.8 4E-17 8.6E-22 146.3 19.1 190 61-263 22-252 (284)
110 PRK14700 recombination factor 99.8 7.7E-17 1.7E-21 140.5 19.5 181 186-368 9-212 (300)
111 PRK14086 dnaA chromosomal repl 99.8 7.7E-16 1.7E-20 148.0 27.3 214 52-278 278-513 (617)
112 PRK00149 dnaA chromosomal repl 99.8 6.8E-16 1.5E-20 147.9 26.2 206 59-279 120-348 (450)
113 TIGR03345 VI_ClpV1 type VI sec 99.7 1.1E-16 2.4E-21 162.6 21.3 206 48-264 174-410 (852)
114 PRK14088 dnaA chromosomal repl 99.7 1.4E-15 3E-20 144.4 27.3 207 58-278 102-330 (440)
115 PRK12422 chromosomal replicati 99.7 1.5E-16 3.2E-21 150.6 19.8 207 55-278 104-341 (445)
116 TIGR00362 DnaA chromosomal rep 99.7 7.4E-16 1.6E-20 146.0 22.0 206 58-278 107-335 (405)
117 COG1224 TIP49 DNA helicase TIP 99.7 4.1E-16 9E-21 136.8 18.3 121 156-277 292-429 (450)
118 TIGR01241 FtsH_fam ATP-depende 99.7 4.4E-16 9.6E-21 150.9 20.3 201 57-278 51-293 (495)
119 CHL00195 ycf46 Ycf46; Provisio 99.7 7.8E-16 1.7E-20 146.5 19.3 203 58-280 225-463 (489)
120 PF00308 Bac_DnaA: Bacterial d 99.7 3.2E-16 6.9E-21 135.1 15.0 191 58-263 5-215 (219)
121 PRK03992 proteasome-activating 99.7 1.3E-15 2.9E-20 142.6 20.2 203 58-277 128-369 (389)
122 CHL00176 ftsH cell division pr 99.7 2.7E-15 5.8E-20 147.3 21.3 204 58-278 180-421 (638)
123 PTZ00454 26S protease regulato 99.7 4.6E-15 1E-19 138.3 21.1 203 58-277 142-383 (398)
124 PTZ00361 26 proteosome regulat 99.7 2.1E-15 4.5E-20 141.5 18.7 209 51-277 173-421 (438)
125 PF06068 TIP49: TIP49 C-termin 99.7 2.1E-15 4.6E-20 134.6 17.1 104 156-260 279-395 (398)
126 TIGR00763 lon ATP-dependent pr 99.7 1.6E-15 3.6E-20 153.9 17.0 182 62-261 321-551 (775)
127 KOG0730 AAA+-type ATPase [Post 99.7 7.5E-15 1.6E-19 138.7 19.8 185 58-264 431-652 (693)
128 TIGR03015 pepcterm_ATPase puta 99.7 2.7E-14 5.8E-19 128.2 21.6 221 46-279 8-265 (269)
129 KOG0733 Nuclear AAA ATPase (VC 99.6 1.1E-14 2.3E-19 136.1 18.0 180 59-259 188-405 (802)
130 PRK08485 DNA polymerase III su 99.6 2.5E-15 5.4E-20 123.1 11.6 129 121-263 33-174 (206)
131 TIGR03346 chaperone_ClpB ATP-d 99.6 1.6E-14 3.4E-19 148.1 20.3 205 49-264 161-396 (852)
132 COG0593 DnaA ATPase involved i 99.6 1.6E-14 3.4E-19 132.6 18.1 206 59-278 85-311 (408)
133 PRK10787 DNA-binding ATP-depen 99.6 4.8E-15 1E-19 149.1 16.0 241 30-280 283-582 (784)
134 TIGR01242 26Sp45 26S proteasom 99.6 2.4E-14 5.2E-19 133.7 19.4 202 58-277 119-360 (364)
135 PRK11034 clpA ATP-dependent Cl 99.6 4.6E-14 9.9E-19 141.1 21.6 215 51-277 176-430 (758)
136 TIGR02640 gas_vesic_GvpN gas v 99.6 1.1E-13 2.5E-18 122.9 21.5 197 67-276 8-253 (262)
137 KOG1942 DNA helicase, TBP-inte 99.6 5.4E-14 1.2E-18 120.5 17.8 121 156-277 297-435 (456)
138 PRK10865 protein disaggregatio 99.6 2.6E-14 5.6E-19 145.9 18.6 205 48-263 165-400 (857)
139 TIGR03345 VI_ClpV1 type VI sec 99.6 2E-14 4.3E-19 146.3 17.2 194 61-261 566-827 (852)
140 TIGR03689 pup_AAA proteasome A 99.6 6.7E-14 1.5E-18 133.1 19.4 172 53-235 174-385 (512)
141 PRK11034 clpA ATP-dependent Cl 99.6 2.9E-14 6.3E-19 142.5 17.7 176 61-246 458-694 (758)
142 PF05673 DUF815: Protein of un 99.6 1.1E-13 2.4E-18 117.7 18.4 190 53-261 19-246 (249)
143 PRK13407 bchI magnesium chelat 99.6 7.8E-14 1.7E-18 126.6 18.2 216 56-277 3-303 (334)
144 KOG0733 Nuclear AAA ATPase (VC 99.6 1.1E-13 2.5E-18 129.3 19.2 183 58-256 508-728 (802)
145 COG0466 Lon ATP-dependent Lon 99.6 1.4E-14 2.9E-19 138.3 12.9 229 27-262 281-555 (782)
146 TIGR01243 CDC48 AAA family ATP 99.6 5.9E-14 1.3E-18 142.4 18.2 176 58-251 450-658 (733)
147 CHL00095 clpC Clp protease ATP 99.6 8.8E-14 1.9E-18 142.2 19.5 202 51-264 169-401 (821)
148 CHL00095 clpC Clp protease ATP 99.6 1.1E-13 2.5E-18 141.4 19.6 179 61-246 509-760 (821)
149 KOG2004 Mitochondrial ATP-depe 99.6 1.1E-14 2.4E-19 138.3 11.1 229 26-262 368-643 (906)
150 TIGR02639 ClpA ATP-dependent C 99.6 1.4E-13 3.1E-18 139.2 18.9 180 61-246 454-690 (731)
151 KOG0734 AAA+-type ATPase conta 99.6 1.2E-13 2.7E-18 127.2 16.5 199 57-277 300-538 (752)
152 PLN00020 ribulose bisphosphate 99.6 3.5E-13 7.7E-18 120.8 18.8 151 81-249 146-331 (413)
153 PRK06526 transposase; Provisio 99.6 2.6E-15 5.7E-20 131.8 4.6 180 1-195 17-201 (254)
154 PRK10865 protein disaggregatio 99.6 3.9E-13 8.5E-18 137.3 21.0 195 59-260 566-824 (857)
155 TIGR03346 chaperone_ClpB ATP-d 99.6 2.4E-13 5.3E-18 139.4 19.5 194 61-261 565-822 (852)
156 PF00004 AAA: ATPase family as 99.5 7.8E-14 1.7E-18 110.9 11.7 113 85-212 1-131 (132)
157 COG0542 clpA ATP-binding subun 99.5 1.3E-13 2.7E-18 135.3 15.3 179 61-246 491-733 (786)
158 KOG1968 Replication factor C, 99.5 3.8E-14 8.3E-19 141.8 11.7 207 48-262 307-537 (871)
159 TIGR01817 nifA Nif-specific re 99.5 4.9E-13 1.1E-17 131.1 19.3 218 53-274 188-439 (534)
160 KOG0731 AAA+-type ATPase conta 99.5 4.6E-13 9.9E-18 130.4 18.4 205 57-277 307-550 (774)
161 KOG0738 AAA+-type ATPase [Post 99.5 8.2E-13 1.8E-17 117.5 17.0 175 58-252 209-419 (491)
162 CHL00081 chlI Mg-protoporyphyr 99.5 1.6E-12 3.6E-17 118.2 19.4 220 58-277 14-319 (350)
163 PRK08181 transposase; Validate 99.5 9E-15 2E-19 128.9 4.3 173 1-195 24-209 (269)
164 PRK10733 hflB ATP-dependent me 99.5 6.8E-13 1.5E-17 131.9 18.0 206 51-277 142-389 (644)
165 KOG0743 AAA+-type ATPase [Post 99.5 7.8E-13 1.7E-17 120.6 16.0 151 56-228 196-384 (457)
166 PRK05342 clpX ATP-dependent pr 99.5 8.4E-13 1.8E-17 123.5 16.2 173 62-246 72-357 (412)
167 TIGR02030 BchI-ChlI magnesium 99.5 4E-12 8.6E-17 115.8 19.3 213 59-277 2-306 (337)
168 TIGR02974 phageshock_pspF psp 99.5 2.6E-12 5.6E-17 117.6 18.2 206 63-272 1-242 (329)
169 COG0464 SpoVK ATPases of the A 99.5 2.6E-12 5.7E-17 125.0 18.8 204 58-277 239-480 (494)
170 KOG0727 26S proteasome regulat 99.5 3.1E-12 6.7E-17 107.6 16.0 158 55-232 148-344 (408)
171 KOG0739 AAA+-type ATPase [Post 99.5 3.4E-13 7.3E-18 115.9 10.2 225 59-299 131-386 (439)
172 cd00009 AAA The AAA+ (ATPases 99.5 2.9E-12 6.3E-17 103.6 15.1 137 64-212 1-150 (151)
173 KOG0742 AAA+-type ATPase [Post 99.5 1.4E-12 3E-17 116.7 13.9 156 59-230 353-531 (630)
174 PF01637 Arch_ATPase: Archaeal 99.5 8.8E-13 1.9E-17 115.6 12.8 188 63-254 1-232 (234)
175 PRK13531 regulatory ATPase Rav 99.5 1.1E-11 2.3E-16 116.2 20.4 200 61-274 20-278 (498)
176 PRK11608 pspF phage shock prot 99.5 6.7E-12 1.5E-16 115.0 18.8 210 59-272 4-249 (326)
177 TIGR01243 CDC48 AAA family ATP 99.4 3.4E-12 7.3E-17 129.6 18.2 177 58-252 175-383 (733)
178 KOG2227 Pre-initiation complex 99.4 1.9E-11 4.2E-16 111.6 21.0 208 52-263 144-378 (529)
179 KOG0737 AAA+-type ATPase [Post 99.4 2.9E-12 6.3E-17 113.8 14.7 188 58-262 89-308 (386)
180 KOG0736 Peroxisome assembly fa 99.4 2.2E-12 4.8E-17 123.8 14.9 171 58-249 669-878 (953)
181 KOG1514 Origin recognition com 99.4 1.5E-11 3.4E-16 117.2 20.4 201 63-264 398-628 (767)
182 COG1221 PspF Transcriptional r 99.4 4.7E-12 1E-16 116.1 15.8 204 58-264 75-309 (403)
183 TIGR02329 propionate_PrpR prop 99.4 1E-11 2.2E-16 119.9 19.0 215 58-276 209-466 (526)
184 KOG2680 DNA helicase TIP49, TB 99.4 2E-11 4.4E-16 105.2 18.3 120 156-276 289-425 (454)
185 PRK10820 DNA-binding transcrip 99.4 3.2E-11 6.9E-16 117.4 22.3 213 57-273 200-447 (520)
186 PRK11388 DNA-binding transcrip 99.4 9.1E-12 2E-16 124.9 19.1 212 58-276 322-567 (638)
187 COG2204 AtoC Response regulato 99.4 2.2E-11 4.8E-16 113.7 19.7 213 58-274 138-385 (464)
188 PRK09183 transposase/IS protei 99.4 1.2E-13 2.5E-18 122.2 4.1 175 2-195 22-206 (259)
189 CHL00206 ycf2 Ycf2; Provisiona 99.4 9.6E-12 2.1E-16 130.4 18.2 124 155-278 1732-1875(2281)
190 TIGR00382 clpX endopeptidase C 99.4 1.5E-11 3.2E-16 114.5 17.4 173 62-246 78-363 (413)
191 KOG0652 26S proteasome regulat 99.4 8E-12 1.7E-16 105.6 13.9 167 59-247 169-374 (424)
192 PRK15424 propionate catabolism 99.4 2.6E-11 5.5E-16 117.0 18.4 215 58-273 216-478 (538)
193 KOG0728 26S proteasome regulat 99.4 3.1E-11 6.7E-16 101.5 16.1 159 57-231 142-335 (404)
194 COG2607 Predicted ATPase (AAA+ 99.4 5.4E-11 1.2E-15 99.6 17.3 190 54-262 53-279 (287)
195 TIGR02442 Cob-chelat-sub cobal 99.4 6.7E-11 1.5E-15 117.6 20.0 214 59-277 2-301 (633)
196 PRK05022 anaerobic nitric oxid 99.4 8E-11 1.7E-15 114.6 20.0 202 59-264 185-420 (509)
197 TIGR01650 PD_CobS cobaltochela 99.4 1.6E-10 3.4E-15 103.7 20.1 167 53-227 37-233 (327)
198 KOG0740 AAA+-type ATPase [Post 99.3 1.6E-11 3.4E-16 112.9 13.8 180 53-248 145-354 (428)
199 PRK15429 formate hydrogenlyase 99.3 5.4E-11 1.2E-15 120.1 18.8 218 49-270 362-616 (686)
200 COG3829 RocR Transcriptional r 99.3 1.5E-10 3.3E-15 108.2 19.4 217 54-274 238-491 (560)
201 KOG0735 AAA+-type ATPase [Post 99.3 1.1E-10 2.3E-15 111.5 17.5 170 58-248 664-868 (952)
202 PF05621 TniB: Bacterial TniB 99.3 2E-10 4.4E-15 101.1 17.7 217 61-277 34-286 (302)
203 COG0465 HflB ATP-dependent Zn 99.3 6.2E-11 1.3E-15 113.7 15.5 198 58-277 147-387 (596)
204 TIGR00390 hslU ATP-dependent p 99.3 7.6E-11 1.6E-15 108.3 15.1 107 155-261 247-401 (441)
205 KOG0729 26S proteasome regulat 99.3 5.8E-11 1.3E-15 100.8 13.2 173 59-249 175-382 (435)
206 TIGR00764 lon_rel lon-related 99.3 1.8E-10 3.9E-15 113.5 17.8 125 154-278 216-389 (608)
207 KOG0726 26S proteasome regulat 99.3 4.3E-11 9.2E-16 102.8 11.1 146 58-223 182-365 (440)
208 PF01078 Mg_chelatase: Magnesi 99.3 7.9E-12 1.7E-16 104.3 6.3 118 59-182 1-133 (206)
209 COG3604 FhlA Transcriptional r 99.3 2.9E-10 6.4E-15 104.9 17.0 210 59-272 221-464 (550)
210 PRK10923 glnG nitrogen regulat 99.3 4.8E-10 1E-14 108.8 19.0 212 59-274 136-382 (469)
211 PHA02244 ATPase-like protein 99.2 2.2E-10 4.7E-15 103.9 15.2 130 71-216 110-263 (383)
212 PRK05201 hslU ATP-dependent pr 99.2 2.8E-10 6E-15 104.7 15.8 107 155-261 249-403 (443)
213 TIGR02915 PEP_resp_reg putativ 99.2 5.7E-10 1.2E-14 107.5 18.8 212 59-274 137-383 (445)
214 KOG0744 AAA+-type ATPase [Post 99.2 1E-10 2.2E-15 102.0 11.7 134 85-227 180-340 (423)
215 COG0542 clpA ATP-binding subun 99.2 5.7E-10 1.2E-14 110.0 18.3 202 51-264 160-393 (786)
216 COG0714 MoxR-like ATPases [Gen 99.2 3.1E-10 6.8E-15 104.6 15.7 155 61-223 24-198 (329)
217 PF06144 DNA_pol3_delta: DNA p 99.2 3.8E-11 8.3E-16 100.1 8.8 164 85-262 1-172 (172)
218 PRK13765 ATP-dependent proteas 99.2 9.6E-10 2.1E-14 108.0 19.4 124 154-277 225-397 (637)
219 KOG0735 AAA+-type ATPase [Post 99.2 8.6E-10 1.9E-14 105.5 18.2 190 82-281 431-649 (952)
220 TIGR00368 Mg chelatase-related 99.2 4.7E-10 1E-14 107.6 16.5 157 58-218 189-395 (499)
221 smart00350 MCM minichromosome 99.2 1.4E-09 3.1E-14 105.6 19.6 155 61-226 203-399 (509)
222 KOG0730 AAA+-type ATPase [Post 99.2 2E-09 4.2E-14 102.6 19.2 208 61-289 184-425 (693)
223 PRK15115 response regulator Gl 99.2 8.2E-09 1.8E-13 99.5 24.0 211 62-276 135-380 (444)
224 PRK11331 5-methylcytosine-spec 99.2 2.8E-10 6.1E-15 105.9 12.3 154 60-223 174-368 (459)
225 TIGR01818 ntrC nitrogen regula 99.2 2.2E-09 4.7E-14 104.1 19.0 210 61-274 134-378 (463)
226 PF07728 AAA_5: AAA domain (dy 99.2 2.3E-11 5E-16 97.6 4.3 114 84-206 1-139 (139)
227 PF07724 AAA_2: AAA domain (Cd 99.2 6.6E-11 1.4E-15 97.7 6.4 103 84-195 5-130 (171)
228 PRK11361 acetoacetate metaboli 99.1 3.1E-09 6.7E-14 102.9 18.8 211 60-274 142-387 (457)
229 smart00763 AAA_PrkA PrkA AAA d 99.1 2.6E-09 5.6E-14 97.0 14.7 95 150-244 231-347 (361)
230 TIGR02031 BchD-ChlD magnesium 99.1 5.7E-09 1.2E-13 102.8 18.1 200 72-277 6-255 (589)
231 PF01695 IstB_IS21: IstB-like 99.1 1.4E-10 3E-15 96.6 5.8 96 81-195 46-150 (178)
232 KOG0732 AAA+-type ATPase conta 99.1 4.3E-09 9.2E-14 106.0 16.4 192 59-261 263-485 (1080)
233 PF00158 Sigma54_activat: Sigm 99.1 3.7E-10 8.1E-15 93.0 7.3 126 63-195 1-144 (168)
234 PRK12377 putative replication 99.1 1.2E-09 2.6E-14 95.3 10.9 131 53-195 66-206 (248)
235 COG1219 ClpX ATP-dependent pro 99.1 2.9E-09 6.4E-14 92.9 13.0 173 62-246 62-346 (408)
236 COG3267 ExeA Type II secretory 99.1 3.2E-08 7E-13 84.2 18.9 217 39-261 9-249 (269)
237 KOG0651 26S proteasome regulat 99.1 2.4E-09 5.2E-14 93.1 11.9 172 57-248 128-339 (388)
238 KOG2170 ATPase of the AAA+ sup 99.0 7.2E-09 1.6E-13 89.9 14.4 127 62-197 83-227 (344)
239 PF13173 AAA_14: AAA domain 99.0 3E-09 6.5E-14 83.9 11.0 119 84-219 4-127 (128)
240 PF00931 NB-ARC: NB-ARC domain 99.0 7E-09 1.5E-13 94.0 14.3 187 66-256 1-202 (287)
241 PRK08116 hypothetical protein; 99.0 2.3E-09 5E-14 95.3 10.6 148 52-216 76-251 (268)
242 PF07726 AAA_3: ATPase family 99.0 3E-10 6.6E-15 86.9 4.2 111 84-207 1-130 (131)
243 PTZ00111 DNA replication licen 99.0 2.3E-08 4.9E-13 100.4 18.4 147 61-217 450-647 (915)
244 PRK07952 DNA replication prote 99.0 3.9E-09 8.5E-14 91.9 11.4 153 52-214 63-234 (244)
245 PRK10365 transcriptional regul 99.0 3.1E-08 6.7E-13 95.5 18.5 210 62-275 140-384 (441)
246 COG1484 DnaC DNA replication p 99.0 4.6E-10 1E-14 98.8 4.9 175 9-196 30-210 (254)
247 PF08542 Rep_fac_C: Replicatio 99.0 1.9E-08 4.1E-13 73.8 12.4 87 280-367 3-89 (89)
248 COG3283 TyrR Transcriptional r 98.9 2.7E-07 5.8E-12 82.1 20.7 210 58-274 201-443 (511)
249 PRK09862 putative ATP-dependen 98.9 6.3E-08 1.4E-12 92.7 17.3 154 58-217 188-391 (506)
250 KOG0482 DNA replication licens 98.9 8.7E-08 1.9E-12 88.6 17.2 282 48-343 329-703 (721)
251 KOG0745 Putative ATP-dependent 98.9 3.5E-08 7.6E-13 89.6 14.3 170 83-264 227-508 (564)
252 COG0606 Predicted ATPase with 98.9 1.1E-09 2.3E-14 101.3 4.1 121 58-182 176-310 (490)
253 COG1239 ChlI Mg-chelatase subu 98.9 7.6E-08 1.7E-12 87.9 15.8 164 59-229 15-234 (423)
254 KOG1051 Chaperone HSP104 and r 98.9 1.2E-08 2.6E-13 102.2 11.6 123 61-196 562-712 (898)
255 KOG0741 AAA+-type ATPase [Post 98.9 1.4E-08 3E-13 94.3 10.9 154 81-246 252-436 (744)
256 COG1220 HslU ATP-dependent pro 98.9 2.5E-08 5.5E-13 87.8 11.9 92 155-246 250-381 (444)
257 PF14532 Sigma54_activ_2: Sigm 98.9 1.2E-08 2.6E-13 81.7 8.9 124 65-213 2-137 (138)
258 smart00382 AAA ATPases associa 98.9 5.4E-08 1.2E-12 77.7 12.8 95 83-194 3-125 (148)
259 PRK06921 hypothetical protein; 98.8 3E-08 6.6E-13 88.0 11.3 101 82-195 117-225 (266)
260 PF12169 DNA_pol3_gamma3: DNA 98.8 5E-08 1.1E-12 78.5 10.9 111 268-378 1-138 (143)
261 PRK06835 DNA replication prote 98.8 4.7E-08 1E-12 89.1 11.4 131 69-215 168-318 (329)
262 PRK08939 primosomal protein Dn 98.8 1.2E-08 2.7E-13 92.2 7.5 131 46-195 114-261 (306)
263 PF05729 NACHT: NACHT domain 98.8 6.6E-08 1.4E-12 79.8 10.6 144 85-228 3-164 (166)
264 PRK04841 transcriptional regul 98.8 3.5E-06 7.5E-11 88.8 25.4 188 57-255 10-224 (903)
265 PRK13406 bchD magnesium chelat 98.8 6.4E-07 1.4E-11 87.7 18.3 202 66-277 8-247 (584)
266 PF12774 AAA_6: Hydrolytic ATP 98.7 5.9E-06 1.3E-10 71.6 20.4 138 70-233 22-183 (231)
267 PRK04132 replication factor C 98.7 1.3E-08 2.9E-13 102.4 4.2 52 47-98 5-56 (846)
268 COG1241 MCM2 Predicted ATPase 98.7 5.6E-07 1.2E-11 88.3 14.6 137 60-210 285-464 (682)
269 PHA00729 NTP-binding motif con 98.7 1.2E-07 2.6E-12 80.8 8.8 126 73-225 8-138 (226)
270 COG1618 Predicted nucleotide k 98.6 1.3E-06 2.8E-11 69.2 12.9 121 85-217 8-165 (179)
271 PLN03210 Resistant to P. syrin 98.6 2.5E-06 5.4E-11 91.4 19.5 188 58-252 181-391 (1153)
272 PF13401 AAA_22: AAA domain; P 98.6 1.1E-07 2.5E-12 75.2 7.2 109 84-194 6-125 (131)
273 COG3284 AcoR Transcriptional a 98.6 1.5E-06 3.4E-11 83.2 15.0 184 84-272 338-549 (606)
274 KOG0478 DNA replication licens 98.6 7.8E-07 1.7E-11 85.3 12.5 138 62-217 430-616 (804)
275 KOG0736 Peroxisome assembly fa 98.6 3E-06 6.5E-11 82.5 16.4 151 65-231 405-580 (953)
276 KOG0477 DNA replication licens 98.5 6.9E-06 1.5E-10 78.2 17.1 228 62-303 450-756 (854)
277 KOG0480 DNA replication licens 98.5 1E-06 2.3E-11 83.8 11.7 137 58-208 342-521 (764)
278 PF14516 AAA_35: AAA-like doma 98.5 0.00011 2.4E-09 67.7 24.7 198 64-273 14-253 (331)
279 COG4650 RtcR Sigma54-dependent 98.5 2.9E-05 6.4E-10 67.6 19.2 193 84-277 210-440 (531)
280 PF13191 AAA_16: AAA ATPase do 98.5 2.8E-07 6.1E-12 77.6 6.1 48 62-109 1-51 (185)
281 PF12775 AAA_7: P-loop contain 98.5 9.3E-07 2E-11 78.8 9.2 148 72-229 25-195 (272)
282 COG5271 MDN1 AAA ATPase contai 98.4 2.1E-06 4.5E-11 89.5 11.8 170 63-246 867-1061(4600)
283 PF07693 KAP_NTPase: KAP famil 98.4 5.3E-05 1.2E-09 69.9 20.3 75 154-229 171-265 (325)
284 PF03266 NTPase_1: NTPase; In 98.4 3.1E-07 6.8E-12 75.6 4.2 63 155-220 95-164 (168)
285 TIGR02688 conserved hypothetic 98.4 1.9E-05 4.1E-10 73.2 16.2 114 55-196 185-314 (449)
286 PHA02774 E1; Provisional 98.4 3.7E-06 8E-11 80.6 11.6 138 68-233 419-587 (613)
287 KOG2543 Origin recognition com 98.3 0.00044 9.6E-09 62.7 22.9 196 61-272 6-247 (438)
288 PF13604 AAA_30: AAA domain; P 98.3 4.5E-06 9.7E-11 70.9 9.8 121 67-195 4-131 (196)
289 KOG0741 AAA+-type ATPase [Post 98.3 3.8E-05 8.2E-10 72.1 16.1 156 85-261 541-720 (744)
290 PF10443 RNA12: RNA12 protein; 98.3 7.9E-05 1.7E-09 69.1 17.6 107 155-262 148-284 (431)
291 PF00910 RNA_helicase: RNA hel 98.3 3.2E-06 6.8E-11 64.3 7.1 74 85-182 1-80 (107)
292 COG1373 Predicted ATPase (AAA+ 98.3 0.00026 5.6E-09 66.9 21.1 132 69-221 25-161 (398)
293 PF06309 Torsin: Torsin; Inte 98.2 9.5E-06 2.1E-10 62.2 9.1 79 61-139 25-114 (127)
294 PRK10536 hypothetical protein; 98.2 2.3E-05 5.1E-10 68.1 12.2 59 46-106 39-98 (262)
295 PF12780 AAA_8: P-loop contain 98.2 0.00012 2.6E-09 64.9 16.5 152 62-229 9-212 (268)
296 COG2909 MalT ATP-dependent tra 98.2 0.0006 1.3E-08 67.9 21.8 190 56-257 14-233 (894)
297 KOG2228 Origin recognition com 98.2 3.4E-05 7.4E-10 68.5 11.9 165 62-227 25-219 (408)
298 PF03969 AFG1_ATPase: AFG1-lik 98.1 8E-06 1.7E-10 75.6 7.8 113 84-214 64-201 (362)
299 PHA02624 large T antigen; Prov 98.1 2.5E-05 5.5E-10 75.3 10.0 116 71-213 419-561 (647)
300 PF00493 MCM: MCM2/3/5 family 98.1 6.2E-06 1.4E-10 75.8 5.8 147 62-222 25-216 (331)
301 KOG0481 DNA replication licens 98.0 2.5E-05 5.5E-10 72.8 9.4 143 49-209 323-508 (729)
302 PRK15455 PrkA family serine pr 98.0 3.2E-06 7E-11 81.0 3.3 96 11-106 13-127 (644)
303 PRK04296 thymidine kinase; Pro 98.0 0.00012 2.7E-09 61.7 11.4 91 85-192 5-113 (190)
304 cd00561 CobA_CobO_BtuR ATP:cor 98.0 9.4E-05 2E-09 59.9 10.1 50 155-207 95-147 (159)
305 KOG3347 Predicted nucleotide k 97.9 1.8E-05 3.9E-10 61.8 5.5 26 81-106 6-31 (176)
306 COG3899 Predicted ATPase [Gene 97.9 0.0024 5.2E-08 66.1 22.7 107 155-262 154-266 (849)
307 PRK10875 recD exonuclease V su 97.9 8.3E-05 1.8E-09 73.6 11.2 109 84-195 169-302 (615)
308 cd01120 RecA-like_NTPases RecA 97.9 0.00015 3.2E-09 59.3 10.7 23 85-107 2-24 (165)
309 PF00448 SRP54: SRP54-type pro 97.9 9.7E-05 2.1E-09 62.5 9.4 109 85-195 4-126 (196)
310 PTZ00202 tuzin; Provisional 97.9 0.0022 4.8E-08 59.9 18.3 51 56-106 257-310 (550)
311 COG5271 MDN1 AAA ATPase contai 97.8 0.00028 6.1E-09 74.5 13.5 152 73-244 1536-1716(4600)
312 TIGR01448 recD_rel helicase, p 97.8 0.00018 4E-09 73.0 12.4 121 66-194 325-452 (720)
313 PF09848 DUF2075: Uncharacteri 97.8 8.4E-05 1.8E-09 69.3 9.0 93 85-181 4-117 (352)
314 PF04665 Pox_A32: Poxvirus A32 97.8 0.0023 5E-08 55.5 16.8 69 155-224 98-167 (241)
315 PRK12723 flagellar biosynthesi 97.8 0.00034 7.3E-09 65.3 12.5 107 85-195 177-298 (388)
316 TIGR01447 recD exodeoxyribonuc 97.8 0.00021 4.6E-09 70.6 11.7 120 68-194 149-295 (586)
317 PRK13695 putative NTPase; Prov 97.8 0.00041 8.9E-09 57.7 11.6 70 155-227 96-172 (174)
318 TIGR00708 cobA cob(I)alamin ad 97.8 0.00055 1.2E-08 56.1 11.5 47 155-207 97-149 (173)
319 PF13671 AAA_33: AAA domain; P 97.7 0.00011 2.4E-09 58.9 7.4 22 85-106 2-23 (143)
320 TIGR01618 phage_P_loop phage n 97.7 4E-05 8.7E-10 65.6 4.9 24 81-104 10-34 (220)
321 COG4088 Predicted nucleotide k 97.7 0.00024 5.2E-09 58.9 9.0 28 82-109 1-28 (261)
322 PRK05703 flhF flagellar biosyn 97.7 0.00035 7.5E-09 66.4 11.5 109 84-196 223-344 (424)
323 PF04851 ResIII: Type III rest 97.7 0.00041 8.8E-09 58.0 10.8 43 65-107 7-50 (184)
324 PF05272 VirE: Virulence-assoc 97.7 0.00051 1.1E-08 58.2 10.6 99 85-213 55-169 (198)
325 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 0.00059 1.3E-08 57.2 10.9 22 85-106 2-23 (183)
326 PF10236 DAP3: Mitochondrial r 97.7 0.0018 4E-08 59.0 14.7 47 208-254 258-307 (309)
327 COG2842 Uncharacterized ATPase 97.7 0.00057 1.2E-08 60.1 10.8 191 59-264 70-279 (297)
328 cd00046 DEXDc DEAD-like helica 97.7 0.00024 5.2E-09 56.2 8.1 25 84-108 2-26 (144)
329 PRK05986 cob(I)alamin adenolsy 97.7 0.00026 5.6E-09 58.9 8.3 41 155-195 115-158 (191)
330 PF02562 PhoH: PhoH-like prote 97.7 0.00029 6.2E-09 59.6 8.7 37 155-194 119-155 (205)
331 PF05970 PIF1: PIF1-like helic 97.6 0.0003 6.4E-09 65.8 9.5 42 66-107 6-47 (364)
332 PRK00771 signal recognition pa 97.6 0.021 4.6E-07 54.4 21.8 24 85-108 98-121 (437)
333 COG1419 FlhF Flagellar GTP-bin 97.6 0.0017 3.7E-08 60.0 13.7 120 84-207 205-336 (407)
334 TIGR02768 TraA_Ti Ti-type conj 97.6 0.00055 1.2E-08 69.8 11.4 116 66-194 354-476 (744)
335 COG1485 Predicted ATPase [Gene 97.6 0.00086 1.9E-08 60.4 10.8 119 85-214 68-204 (367)
336 PRK14974 cell division protein 97.6 0.0014 3E-08 60.2 12.3 23 85-107 143-165 (336)
337 PRK14532 adenylate kinase; Pro 97.5 0.0012 2.6E-08 55.6 11.1 23 84-106 2-24 (188)
338 KOG1808 AAA ATPase containing 97.5 0.00019 4.2E-09 77.3 7.4 147 71-227 430-599 (1856)
339 PF13207 AAA_17: AAA domain; P 97.5 9.7E-05 2.1E-09 57.4 4.0 22 85-106 2-23 (121)
340 PF00437 T2SE: Type II/IV secr 97.5 0.00062 1.3E-08 61.0 9.6 52 57-108 100-153 (270)
341 PRK06762 hypothetical protein; 97.5 0.0033 7.2E-08 51.7 13.2 22 85-106 5-26 (166)
342 COG2884 FtsE Predicted ATPase 97.5 0.00074 1.6E-08 55.4 8.4 59 155-213 155-214 (223)
343 KOG4658 Apoptotic ATPase [Sign 97.5 0.0011 2.4E-08 68.6 11.9 189 64-261 161-366 (889)
344 cd01124 KaiC KaiC is a circadi 97.5 0.00072 1.6E-08 56.9 9.0 23 85-107 2-24 (187)
345 KOG1051 Chaperone HSP104 and r 97.5 0.0023 5E-08 65.1 13.4 192 60-262 185-408 (898)
346 PF00519 PPV_E1_C: Papillomavi 97.5 0.0003 6.5E-09 64.2 6.5 130 71-231 250-413 (432)
347 PRK12727 flagellar biosynthesi 97.4 0.0022 4.8E-08 61.7 12.5 23 84-106 352-374 (559)
348 PRK11889 flhF flagellar biosyn 97.4 0.0014 3E-08 60.7 10.7 24 84-107 243-266 (436)
349 PRK14528 adenylate kinase; Pro 97.4 0.0021 4.6E-08 54.0 11.2 25 83-107 2-26 (186)
350 PRK13889 conjugal transfer rel 97.4 0.0016 3.5E-08 67.7 12.3 116 66-194 348-470 (988)
351 smart00487 DEXDc DEAD-like hel 97.4 0.0014 2.9E-08 55.2 10.1 41 155-195 129-170 (201)
352 cd02021 GntK Gluconate kinase 97.4 0.00081 1.8E-08 54.4 8.3 22 85-106 2-23 (150)
353 TIGR02858 spore_III_AA stage I 97.4 0.0013 2.8E-08 58.5 9.8 33 74-106 103-135 (270)
354 PRK08118 topology modulation p 97.4 0.0005 1.1E-08 56.7 6.8 26 84-109 3-28 (167)
355 cd01128 rho_factor Transcripti 97.4 0.00083 1.8E-08 59.0 8.6 28 81-108 15-42 (249)
356 TIGR01425 SRP54_euk signal rec 97.4 0.047 1E-06 51.7 20.5 128 85-217 103-252 (429)
357 PRK14722 flhF flagellar biosyn 97.4 0.00091 2E-08 62.0 9.0 23 84-106 139-161 (374)
358 TIGR02782 TrbB_P P-type conjug 97.4 0.0031 6.6E-08 57.2 12.0 49 57-107 105-157 (299)
359 KOG0479 DNA replication licens 97.4 0.0019 4.2E-08 61.6 10.8 144 50-209 294-478 (818)
360 PRK12724 flagellar biosynthesi 97.4 0.0018 4E-08 60.6 10.6 22 85-106 226-247 (432)
361 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.0022 4.7E-08 52.3 10.0 96 84-196 27-141 (157)
362 TIGR00959 ffh signal recogniti 97.3 0.067 1.5E-06 50.9 21.1 25 83-107 99-124 (428)
363 PRK13900 type IV secretion sys 97.3 0.0035 7.6E-08 57.6 12.2 35 71-107 151-185 (332)
364 PF01443 Viral_helicase1: Vira 97.3 0.00042 9.1E-09 60.6 5.8 21 85-105 1-21 (234)
365 PRK06067 flagellar accessory p 97.3 0.003 6.5E-08 55.3 11.2 22 85-106 28-49 (234)
366 TIGR03574 selen_PSTK L-seryl-t 97.3 0.0041 8.9E-08 55.0 12.0 23 85-107 2-24 (249)
367 PRK10867 signal recognition pa 97.3 0.072 1.6E-06 50.7 20.8 26 83-108 100-126 (433)
368 cd01129 PulE-GspE PulE/GspE Th 97.3 0.0035 7.6E-08 55.8 11.4 50 57-107 56-105 (264)
369 PHA02530 pseT polynucleotide k 97.3 0.0059 1.3E-07 55.6 13.3 22 85-106 5-26 (300)
370 COG2804 PulE Type II secretory 97.3 0.0016 3.4E-08 61.7 9.4 54 56-110 233-286 (500)
371 cd03216 ABC_Carb_Monos_I This 97.3 0.0025 5.4E-08 52.4 9.6 98 84-196 28-143 (163)
372 PF13245 AAA_19: Part of AAA d 97.3 0.00044 9.5E-09 48.7 4.3 24 84-107 12-35 (76)
373 PF05707 Zot: Zonular occluden 97.2 0.00025 5.3E-09 60.1 3.3 59 155-213 79-145 (193)
374 PF13479 AAA_24: AAA domain 97.2 0.00056 1.2E-08 58.9 5.5 18 85-102 6-23 (213)
375 PRK13826 Dtr system oriT relax 97.2 0.0026 5.5E-08 66.7 11.1 116 66-194 383-505 (1102)
376 TIGR02237 recomb_radB DNA repa 97.2 0.0035 7.7E-08 53.7 10.5 45 85-133 15-59 (209)
377 PF08433 KTI12: Chromatin asso 97.2 0.003 6.5E-08 56.2 10.1 94 83-191 2-105 (270)
378 TIGR02788 VirB11 P-type DNA tr 97.2 0.0065 1.4E-07 55.5 12.6 23 84-106 146-168 (308)
379 PRK14527 adenylate kinase; Pro 97.2 0.0038 8.3E-08 52.7 10.4 25 84-108 8-32 (191)
380 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0055 1.2E-07 49.2 10.8 93 84-196 28-128 (144)
381 PF14840 DNA_pol3_delt_C: Proc 97.2 0.004 8.6E-08 48.4 9.5 83 286-368 2-119 (125)
382 PRK08533 flagellar accessory p 97.2 0.0041 8.8E-08 54.2 10.7 23 85-107 27-49 (230)
383 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0035 7.6E-08 53.9 10.2 21 84-104 31-51 (213)
384 PF10923 DUF2791: P-loop Domai 97.2 0.038 8.3E-07 52.0 17.3 91 156-246 240-371 (416)
385 PRK02496 adk adenylate kinase; 97.2 0.0018 3.9E-08 54.4 7.9 24 84-107 3-26 (184)
386 cd03247 ABCC_cytochrome_bd The 97.2 0.0036 7.8E-08 52.2 9.6 44 155-198 116-160 (178)
387 cd01131 PilT Pilus retraction 97.2 0.0022 4.8E-08 54.5 8.4 23 85-107 4-26 (198)
388 cd01428 ADK Adenylate kinase ( 97.2 0.0046 1E-07 52.2 10.4 22 85-106 2-23 (194)
389 COG4619 ABC-type uncharacteriz 97.2 0.0032 6.8E-08 50.8 8.5 23 84-106 31-53 (223)
390 COG2874 FlaH Predicted ATPases 97.2 0.0065 1.4E-07 51.0 10.7 25 85-109 31-55 (235)
391 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0052 1.1E-07 51.1 10.3 95 84-195 27-132 (177)
392 cd03228 ABCC_MRP_Like The MRP 97.1 0.0068 1.5E-07 50.2 11.1 43 155-197 114-157 (171)
393 PRK05973 replicative DNA helic 97.1 0.0084 1.8E-07 52.1 11.6 23 85-107 67-89 (237)
394 PF13086 AAA_11: AAA domain; P 97.1 0.00053 1.1E-08 59.7 4.3 38 67-106 4-41 (236)
395 cd01121 Sms Sms (bacterial rad 97.1 0.0062 1.4E-07 56.8 11.5 49 71-122 69-119 (372)
396 TIGR01420 pilT_fam pilus retra 97.1 0.0062 1.3E-07 56.5 11.4 35 72-107 113-147 (343)
397 PRK13808 adenylate kinase; Pro 97.1 0.011 2.4E-07 53.9 12.7 24 84-107 2-25 (333)
398 TIGR01313 therm_gnt_kin carboh 97.1 0.0024 5.1E-08 52.4 7.8 22 85-106 1-22 (163)
399 cd01130 VirB11-like_ATPase Typ 97.1 0.0058 1.3E-07 51.4 10.3 38 67-106 12-49 (186)
400 PF01745 IPT: Isopentenyl tran 97.1 0.0062 1.3E-07 51.2 10.0 127 84-229 3-141 (233)
401 cd01394 radB RadB. The archaea 97.1 0.009 2E-07 51.6 11.7 36 85-123 22-57 (218)
402 cd01878 HflX HflX subfamily. 97.1 0.03 6.5E-07 47.7 14.8 24 82-105 41-64 (204)
403 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0022 4.8E-08 50.3 6.9 26 84-109 24-49 (133)
404 PRK09361 radB DNA repair and r 97.1 0.0076 1.6E-07 52.4 11.1 35 85-122 26-60 (225)
405 PRK07261 topology modulation p 97.1 0.0019 4.1E-08 53.5 6.8 23 85-107 3-25 (171)
406 cd03214 ABC_Iron-Siderophores_ 97.1 0.0054 1.2E-07 51.3 9.6 42 155-196 115-159 (180)
407 COG1066 Sms Predicted ATP-depe 97.0 0.013 2.8E-07 54.1 12.5 49 71-123 80-130 (456)
408 PRK14531 adenylate kinase; Pro 97.0 0.0042 9E-08 52.1 8.6 24 84-107 4-27 (183)
409 COG1125 OpuBA ABC-type proline 97.0 0.0031 6.8E-08 54.3 7.7 22 85-106 30-51 (309)
410 PF08298 AAA_PrkA: PrkA AAA do 97.0 0.00071 1.5E-08 61.4 4.1 48 59-106 58-112 (358)
411 TIGR01613 primase_Cterm phage/ 97.0 0.0027 5.9E-08 57.9 8.0 132 61-213 48-203 (304)
412 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0056 1.2E-07 54.4 9.7 23 85-107 39-61 (259)
413 PRK10416 signal recognition pa 97.0 0.016 3.4E-07 53.0 12.8 23 85-107 117-139 (318)
414 PRK05800 cobU adenosylcobinami 97.0 0.0063 1.4E-07 50.2 9.3 23 84-106 3-25 (170)
415 COG3854 SpoIIIAA ncharacterize 97.0 0.01 2.2E-07 50.4 10.4 33 75-107 130-162 (308)
416 TIGR03499 FlhF flagellar biosy 97.0 0.0016 3.6E-08 58.5 6.3 23 85-107 197-219 (282)
417 COG1119 ModF ABC-type molybden 97.0 0.0049 1.1E-07 52.9 8.7 52 155-206 189-244 (257)
418 TIGR02538 type_IV_pilB type IV 97.0 0.011 2.5E-07 58.5 12.6 51 58-109 293-343 (564)
419 cd03246 ABCC_Protease_Secretio 97.0 0.0096 2.1E-07 49.4 10.4 42 155-196 114-157 (173)
420 PRK11823 DNA repair protein Ra 97.0 0.0092 2E-07 57.3 11.6 50 71-123 67-118 (446)
421 PF13238 AAA_18: AAA domain; P 97.0 0.00067 1.4E-08 53.1 3.2 22 85-106 1-22 (129)
422 PRK00131 aroK shikimate kinase 97.0 0.0011 2.4E-08 54.9 4.7 24 83-106 5-28 (175)
423 TIGR02533 type_II_gspE general 97.0 0.012 2.6E-07 57.1 12.3 51 57-108 218-268 (486)
424 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0094 2E-07 52.1 10.8 49 85-133 22-73 (235)
425 PRK13947 shikimate kinase; Pro 97.0 0.0011 2.3E-08 55.0 4.5 24 83-106 2-25 (171)
426 TIGR00767 rho transcription te 97.0 0.0041 8.9E-08 57.8 8.6 27 81-107 167-193 (415)
427 PRK00279 adk adenylate kinase; 96.9 0.006 1.3E-07 52.6 9.2 23 85-107 3-25 (215)
428 TIGR01351 adk adenylate kinase 96.9 0.0041 8.9E-08 53.4 8.1 22 85-106 2-23 (210)
429 PRK14737 gmk guanylate kinase; 96.9 0.012 2.6E-07 49.4 10.7 22 85-106 7-28 (186)
430 TIGR01663 PNK-3'Pase polynucle 96.9 0.0047 1E-07 60.0 9.3 97 85-205 372-468 (526)
431 PRK13709 conjugal transfer nic 96.9 0.012 2.6E-07 64.8 13.1 124 66-194 969-1099(1747)
432 cd02020 CMPK Cytidine monophos 96.9 0.047 1E-06 43.6 13.9 22 85-106 2-23 (147)
433 PRK14712 conjugal transfer nic 96.9 0.0079 1.7E-07 65.3 11.6 124 66-194 837-967 (1623)
434 PRK09376 rho transcription ter 96.9 0.0008 1.7E-08 62.1 3.6 28 81-108 168-195 (416)
435 cd02019 NK Nucleoside/nucleoti 96.9 0.0011 2.3E-08 45.8 3.5 22 85-106 2-23 (69)
436 COG1134 TagH ABC-type polysacc 96.9 0.024 5.3E-07 48.7 12.3 23 84-106 55-77 (249)
437 cd03243 ABC_MutS_homologs The 96.9 0.0082 1.8E-07 51.2 9.7 21 84-104 31-51 (202)
438 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.9 0.017 3.6E-07 47.4 11.2 22 84-105 4-25 (166)
439 PRK03839 putative kinase; Prov 96.9 0.0011 2.4E-08 55.5 4.1 23 84-106 2-24 (180)
440 COG4178 ABC-type uncharacteriz 96.9 0.0088 1.9E-07 58.5 10.5 41 155-195 533-574 (604)
441 COG1936 Predicted nucleotide k 96.9 0.001 2.2E-08 53.8 3.4 22 84-106 2-23 (180)
442 cd03115 SRP The signal recogni 96.9 0.025 5.5E-07 46.8 12.1 23 85-107 3-25 (173)
443 PLN02674 adenylate kinase 96.9 0.014 3E-07 51.0 10.7 24 83-106 32-55 (244)
444 COG1126 GlnQ ABC-type polar am 96.9 0.017 3.7E-07 48.7 10.6 40 155-194 154-195 (240)
445 PRK06547 hypothetical protein; 96.9 0.0023 5.1E-08 52.9 5.6 30 77-106 10-39 (172)
446 cd03238 ABC_UvrA The excision 96.9 0.0076 1.6E-07 50.1 8.7 41 156-196 108-150 (176)
447 PRK10436 hypothetical protein; 96.8 0.0068 1.5E-07 58.2 9.5 51 58-109 195-245 (462)
448 PRK00625 shikimate kinase; Pro 96.8 0.0013 2.9E-08 54.4 4.1 23 84-106 2-24 (173)
449 cd04124 RabL2 RabL2 subfamily. 96.8 0.01 2.2E-07 48.5 9.4 23 85-107 3-25 (161)
450 cd01393 recA_like RecA is a b 96.8 0.021 4.6E-07 49.5 11.8 48 85-132 22-72 (226)
451 COG1100 GTPase SAR1 and relate 96.8 0.015 3.3E-07 50.0 10.9 101 85-198 8-124 (219)
452 KOG3928 Mitochondrial ribosome 96.8 0.077 1.7E-06 49.0 15.3 97 156-253 316-453 (461)
453 cd03223 ABCD_peroxisomal_ALDP 96.8 0.018 4E-07 47.4 10.6 40 155-196 109-149 (166)
454 COG2805 PilT Tfp pilus assembl 96.8 0.06 1.3E-06 47.8 14.0 27 84-110 127-153 (353)
455 PF08303 tRNA_lig_kinase: tRNA 96.8 0.053 1.1E-06 43.8 12.6 120 88-229 5-145 (168)
456 cd03227 ABC_Class2 ABC-type Cl 96.8 0.017 3.7E-07 47.3 10.4 24 84-107 23-46 (162)
457 PRK13894 conjugal transfer ATP 96.8 0.017 3.8E-07 52.7 11.3 48 57-106 121-172 (319)
458 PRK14721 flhF flagellar biosyn 96.8 0.028 6.1E-07 53.1 12.9 22 85-106 194-215 (420)
459 PRK12726 flagellar biosynthesi 96.8 0.022 4.9E-07 52.7 11.9 23 85-107 209-231 (407)
460 cd04106 Rab23_lke Rab23-like s 96.8 0.026 5.6E-07 45.9 11.4 22 85-106 3-24 (162)
461 cd03239 ABC_SMC_head The struc 96.8 0.022 4.8E-07 47.5 11.0 55 155-211 116-172 (178)
462 COG0529 CysC Adenylylsulfate k 96.8 0.015 3.3E-07 47.3 9.5 27 84-110 25-51 (197)
463 PRK06696 uridine kinase; Valid 96.8 0.0026 5.7E-08 55.2 5.6 42 66-107 3-47 (223)
464 PHA00350 putative assembly pro 96.8 0.0062 1.3E-07 56.9 8.2 53 155-207 81-157 (399)
465 smart00534 MUTSac ATPase domai 96.8 0.015 3.3E-07 48.8 10.0 20 85-104 2-21 (185)
466 PF00406 ADK: Adenylate kinase 96.8 0.018 3.8E-07 46.6 10.0 20 87-106 1-20 (151)
467 cd03213 ABCG_EPDR ABCG transpo 96.8 0.0049 1.1E-07 52.2 7.0 42 155-196 129-172 (194)
468 PRK06995 flhF flagellar biosyn 96.7 0.0081 1.8E-07 57.7 9.1 22 85-106 259-280 (484)
469 COG1061 SSL2 DNA or RNA helica 96.7 0.013 2.8E-07 56.4 10.6 120 65-193 37-182 (442)
470 PF00270 DEAD: DEAD/DEAH box h 96.7 0.01 2.2E-07 48.8 8.7 21 84-104 16-36 (169)
471 COG1116 TauB ABC-type nitrate/ 96.7 0.0075 1.6E-07 52.0 7.9 23 84-106 31-53 (248)
472 PRK13949 shikimate kinase; Pro 96.7 0.0019 4E-08 53.4 4.1 23 84-106 3-25 (169)
473 PF01926 MMR_HSR1: 50S ribosom 96.7 0.017 3.8E-07 44.2 9.4 21 85-105 2-22 (116)
474 cd04140 ARHI_like ARHI subfami 96.7 0.017 3.6E-07 47.4 9.9 22 85-106 4-25 (165)
475 cd03230 ABC_DR_subfamily_A Thi 96.7 0.013 2.9E-07 48.5 9.3 42 155-196 113-156 (173)
476 PRK12608 transcription termina 96.7 0.0031 6.7E-08 58.2 5.8 29 80-108 131-159 (380)
477 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0017 3.6E-08 54.7 3.8 25 82-106 3-27 (188)
478 TIGR03877 thermo_KaiC_1 KaiC d 96.7 0.02 4.4E-07 50.2 10.8 35 85-122 24-58 (237)
479 COG0703 AroK Shikimate kinase 96.7 0.0017 3.8E-08 52.9 3.7 24 83-106 3-26 (172)
480 PRK13948 shikimate kinase; Pro 96.7 0.023 5E-07 47.4 10.5 24 83-106 11-34 (182)
481 COG0572 Udk Uridine kinase [Nu 96.7 0.0066 1.4E-07 51.5 7.2 25 85-109 11-35 (218)
482 TIGR03819 heli_sec_ATPase heli 96.7 0.028 6.2E-07 51.9 12.0 38 67-106 165-202 (340)
483 TIGR02524 dot_icm_DotB Dot/Icm 96.7 0.018 3.9E-07 53.5 10.7 24 84-107 136-159 (358)
484 COG1124 DppF ABC-type dipeptid 96.7 0.0089 1.9E-07 51.3 7.8 52 155-207 159-213 (252)
485 TIGR02012 tigrfam_recA protein 96.7 0.023 5E-07 51.7 11.0 23 85-107 58-80 (321)
486 TIGR00064 ftsY signal recognit 96.7 0.0055 1.2E-07 54.8 7.0 23 85-107 75-97 (272)
487 TIGR02760 TraI_TIGR conjugativ 96.7 0.02 4.4E-07 64.4 12.7 125 62-193 427-565 (1960)
488 PRK06731 flhF flagellar biosyn 96.7 0.038 8.3E-07 49.1 12.2 25 83-107 76-100 (270)
489 cd04138 H_N_K_Ras_like H-Ras/N 96.7 0.027 5.8E-07 45.7 10.6 22 85-106 4-25 (162)
490 cd04110 Rab35 Rab35 subfamily. 96.6 0.013 2.8E-07 49.8 8.9 23 84-106 8-30 (199)
491 PRK12337 2-phosphoglycerate ki 96.6 0.026 5.7E-07 53.5 11.6 25 83-107 255-280 (475)
492 cd03287 ABC_MSH3_euk MutS3 hom 96.6 0.025 5.5E-07 48.8 10.7 21 84-104 33-53 (222)
493 PRK06217 hypothetical protein; 96.6 0.0023 5E-08 53.7 4.2 24 84-107 3-26 (183)
494 cd04162 Arl9_Arfrp2_like Arl9/ 96.6 0.021 4.6E-07 46.8 9.9 21 85-105 2-22 (164)
495 PRK09435 membrane ATPase/prote 96.6 0.32 7E-06 44.7 18.2 37 85-122 59-95 (332)
496 cd04113 Rab4 Rab4 subfamily. 96.6 0.033 7.1E-07 45.3 10.9 23 84-106 2-24 (161)
497 cd00877 Ran Ran (Ras-related n 96.6 0.018 4E-07 47.3 9.4 21 85-105 3-23 (166)
498 cd04119 RJL RJL (RabJ-Like) su 96.6 0.036 7.9E-07 45.2 11.3 22 85-106 3-24 (168)
499 cd00464 SK Shikimate kinase (S 96.6 0.0026 5.7E-08 51.5 4.3 22 85-106 2-23 (154)
500 TIGR03880 KaiC_arch_3 KaiC dom 96.6 0.015 3.2E-07 50.5 9.2 23 85-107 19-41 (224)
No 1
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=1e-53 Score=364.43 Aligned_cols=323 Identities=51% Similarity=0.773 Sum_probs=297.3
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
.+..|++||||++|++++||+.++..|.+.+.....||+|||||||||||++|.+++++++|++.....+.+.|+++.++
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 34569999999999999999999999999999988999999999999999999999999999999889999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
+..+++.++.|+....... ...++....++|+|+||+|.|+.++|++|+++||+++.+++||++||..++++.++.|||
T Consensus 102 isvvr~Kik~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 102 ISVVREKIKNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred ccchhhhhcCHHHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 9999999999887654432 233455668899999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhhHhhhhCCCCHHHH
Q 016800 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT-SKDLISVSGVIPPEVV 285 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It-~~~v~~~~~~~~~~~~ 285 (382)
+.++|+++..+++...|+.+|.+||+.++++++..|+..|+||+|+|+..||.++.. +..|| .-.++.+.+..++..+
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~-gk~It~~~~~e~~~GvVp~~~l 259 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLL-GKRITTSLVNEELAGVVPDEKL 259 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhcc-CcccchHHHHHHHhccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999884 78888 4455556668899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHH
Q 016800 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVAS 365 (382)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~ 365 (382)
.++++....+|+.......+++...|+++..++.++...+.....++......+-..+.+.+.++.-|.+..++|-.|+.
T Consensus 260 ~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~L~~ 339 (346)
T KOG0989|consen 260 LDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKDLLE 339 (346)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998855677788889999999999999999999999999999
Q ss_pred HHHHHH
Q 016800 366 NVIRAV 371 (382)
Q Consensus 366 ~l~~~~ 371 (382)
...+++
T Consensus 340 ~~~ql~ 345 (346)
T KOG0989|consen 340 AEKQLR 345 (346)
T ss_pred HHHHHh
Confidence 888764
No 2
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-53 Score=348.89 Aligned_cols=315 Identities=37% Similarity=0.596 Sum_probs=293.3
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
-..||++||||..+.|++|+++.+..+.-..+.|.+||++|.||||+||||.+.++|++++++.. ...++++|++++++
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-ke~vLELNASdeRG 91 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-KEAVLELNASDERG 91 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-hhHhhhccCccccc
Confidence 34679999999999999999999999999999999999999999999999999999999988764 35689999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
++.+|+.++.|++.....+ .++.++||+||+|.|+..+|++|+++||-++..++|.++||...++.++|.|||
T Consensus 92 IDvVRn~IK~FAQ~kv~lp-------~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRC 164 (333)
T KOG0991|consen 92 IDVVRNKIKMFAQKKVTLP-------PGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRC 164 (333)
T ss_pred cHHHHHHHHHHHHhhccCC-------CCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhh
Confidence 9999999999998765432 348899999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHH
Q 016800 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~ 286 (382)
..++|..+++.++...|..+++.|++.++++.++.++..+.||+|+++|.||..... -+.++.+.|.++++..++..+.
T Consensus 165 AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g-~g~Vn~enVfKv~d~PhP~~v~ 243 (333)
T KOG0991|consen 165 AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNG-FGLVNQENVFKVCDEPHPLLVK 243 (333)
T ss_pred HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhcc-ccccchhhhhhccCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999987764 3679999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHH
Q 016800 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASN 366 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~ 366 (382)
+++.++..+++++|++.+..++..|++|.+++..+++.++.. .++.....++++.+.-+..++..|++..|+|.+|+.+
T Consensus 244 ~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~-~~~E~~rlE~ikeig~thmrI~eGv~s~LQl~glla~ 322 (333)
T KOG0991|consen 244 KMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNM-DVAESLRLEFIKEIGLTHMRILEGVNSLLQLSGLLAK 322 (333)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhHHhHHHhhHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998874 3455556799999999999999999999999999999
Q ss_pred HHHHH
Q 016800 367 VIRAV 371 (382)
Q Consensus 367 l~~~~ 371 (382)
++..-
T Consensus 323 l~~~~ 327 (333)
T KOG0991|consen 323 LCKVG 327 (333)
T ss_pred HHHhc
Confidence 99763
No 3
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=1.1e-49 Score=364.15 Aligned_cols=315 Identities=39% Similarity=0.605 Sum_probs=286.2
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
.||.+||||.+|++++||++++..|..++..++.||++|+||||+|||++|++++++++|+.. ...++++++++..+++
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~eln~sd~~~~~ 79 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-KEAVLELNASDDRGID 79 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-ccceeeecccccccHH
Confidence 489999999999999999999999999999999999999999999999999999999988653 3467899999888888
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccce
Q 016800 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 208 (382)
.+++.++.+....... ..++++++||||+|.|+.+++++|++++|.++..++||++||...++.++|+|||..
T Consensus 80 ~vr~~i~~~~~~~~~~-------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 80 VVRNKIKMFAQKKVTL-------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHHHHHHHhccccC-------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 8888888766442211 112679999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHH
Q 016800 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288 (382)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~ 288 (382)
++|++++.+++..+|..+++++|+.++++++..+++.++||+|.+++.||..... .+.||.++|.++++...+..++.+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~-~~~i~~~~v~~~~~~~~~~~i~~~ 231 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSG-FGFVNQENVFKVCDQPHPLHVKNI 231 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999955432 468999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHH
Q 016800 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVI 368 (382)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~ 368 (382)
++++..+++++++.++++|+..|+++..|+..+.+.+... .++......++..++++++++..|.++.++|++|+.+++
T Consensus 232 i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~ 310 (319)
T PLN03025 232 VRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY-DMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLC 310 (319)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877653 578888889999999999999999999999999999999
Q ss_pred HHHcc
Q 016800 369 RAVCN 373 (382)
Q Consensus 369 ~~~~~ 373 (382)
..-.+
T Consensus 311 ~~~~~ 315 (319)
T PLN03025 311 LVRET 315 (319)
T ss_pred HHHHH
Confidence 77543
No 4
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9e-48 Score=356.87 Aligned_cols=314 Identities=24% Similarity=0.353 Sum_probs=272.8
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------- 111 (382)
....||.+||||++|+|++||+++++.|..++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 567899999999999999999999999999999999998 899999999999999999999988531
Q ss_pred -----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCce
Q 016800 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (382)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~ 186 (382)
...+++++++....+++.+++........... ++++|+||||+|.|+.+++|+|++.||+|+.++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~----------g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~v 152 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMG----------GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHI 152 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhc----------CCCEEEEEechhhcCHHHHHHHHHHhhcCCCce
Confidence 22357788887777888888766654433222 278999999999999999999999999999999
Q ss_pred EEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 016800 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~ 266 (382)
+||++|+.+.++.++|+|||+.+.|.+++.+++..++.+++..+|+.++++++..|++.++|++|+|+++|+.+..+.++
T Consensus 153 iFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~ 232 (484)
T PRK14956 153 VFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDS 232 (484)
T ss_pred EEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987766667
Q ss_pred CCChhhHhhhhCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------
Q 016800 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVET----------------- 328 (382)
Q Consensus 267 ~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~----------------- 328 (382)
.||.+.|.++++..+.+.++++++++..++. .+++.++.+++..|.++..++..+..+++..
T Consensus 233 ~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~ 312 (484)
T PRK14956 233 KLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPK 312 (484)
T ss_pred CcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCH
Confidence 8999999999999999999999999999875 6899999999999999999998887777652
Q ss_pred ----------CCCCHHHHHHHHHHHHHH-----hhHhhcCCChHHHHHHHHHHHHH
Q 016800 329 ----------EDISDEQQARICKCLAEV-----DKCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 329 ----------~~~~~~~~~~~~~~~~~~-----~~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
..++...+..++..+..+ +..++...++++.+|.++++++.
T Consensus 313 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 313 EDLQKMKSDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE 368 (484)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence 234555555554443222 23456678999999999999985
No 5
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.2e-47 Score=358.50 Aligned_cols=312 Identities=27% Similarity=0.405 Sum_probs=282.8
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC----------------
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL---------------- 111 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~---------------- 111 (382)
.+|.+||||++|++++||+++++.|..++..++.+| +|||||+|+|||++|+.+++.++|+..
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 479999999999999999999999999999999999 799999999999999999999988642
Q ss_pred --CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 016800 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (382)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 189 (382)
.+..++++++.+..+++.+++.+......+.. ++++|+||||+|.|+.+++++|+++||+|+.++.||
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~----------~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSM----------ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCccc----------CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 23467888877767889999887654322211 278999999999999999999999999999999999
Q ss_pred EeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 016800 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (382)
Q Consensus 190 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It 269 (382)
++|+.+.+++++|+|||..++|.+++.+++..++..+++++|+.++++++..|++.++||+|.++++++++..+.++.||
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It 231 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAIT 231 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777899
Q ss_pred hhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHH
Q 016800 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE-----TEDISDEQQARICKCLA 344 (382)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~~~~~ 344 (382)
.++|.++++......++.+++++..++...++.++.++ .|+++..++..+..+++. ...++...+.+.+..+.
T Consensus 232 ~~~V~~~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l~r~~riL~ 309 (535)
T PRK08451 232 ESKVADMLGLLDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKDSEFSILLYERFFRILS 309 (535)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 579999999999888873 23466777889999999
Q ss_pred HHhhHhhcCCChHHHHHHHHHHHHHHHc
Q 016800 345 EVDKCLVDGADEYLQLLDVASNVIRAVC 372 (382)
Q Consensus 345 ~~~~~l~~g~~~~l~l~~l~~~l~~~~~ 372 (382)
+++..+..|.+.+++++.++++++..+.
T Consensus 310 ~~k~~l~~g~~~~i~l~~~~~~~~~~~~ 337 (535)
T PRK08451 310 SAKSLLKEGADDGFVLLLMLFKMKEALK 337 (535)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998653
No 6
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.6e-47 Score=357.97 Aligned_cols=321 Identities=28% Similarity=0.359 Sum_probs=287.9
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
...+|.+||||++|+|++||+.+++.|.++++.++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 46789999999999999999999999999999999998 899999999999999999999988631
Q ss_pred -----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCce
Q 016800 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (382)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~ 186 (382)
.+.+++++++....+++.++............ ++++||||||+|.|+.++++.|++++|++++.+
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~----------~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSK----------SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhc----------CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 12456777776666778887755544332221 278999999999999999999999999999999
Q ss_pred EEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 016800 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~ 266 (382)
.||++++.+.++.++|+|||..++|++++.+++..|+..+++++|+.+++++++.|+..++||+|.+++++++++.+.++
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~ 232 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPK 232 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877667
Q ss_pred CCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------cCCCCH
Q 016800 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE-------------TEDISD 333 (382)
Q Consensus 267 ~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------~~~~~~ 333 (382)
.|+.++|.++++...++.++++++++..++..+++.++.+|+..|.++..++..+..+++. ...|+.
T Consensus 233 ~It~~~V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a~~~s~ 312 (451)
T PRK06305 233 SLDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVATKYSS 312 (451)
T ss_pred CcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCH
Confidence 7999999999999999999999999999999999999999999999999887776555443 246899
Q ss_pred HHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHccCCCc
Q 016800 334 EQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEE 377 (382)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~~~~~ 377 (382)
+.+.++++.+.+++++++.|.++++.||.|++++++++...+.+
T Consensus 313 ~~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~~~~~~~~ 356 (451)
T PRK06305 313 EQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRIYQRPTLS 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999998877643
No 7
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.9e-47 Score=364.30 Aligned_cols=314 Identities=23% Similarity=0.303 Sum_probs=282.5
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+...|.+||||++|++++||+++++.|.+++..++++| +||+||+|+|||++++.|++.++|...
T Consensus 2 sY~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 2 TYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred ccHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 46789999999999999999999999999999999999 799999999999999999999998531
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...++++++..+..+++.+++.+......... +++||+||||+|.|+..++|.|+++||+++.+++
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~----------gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVD----------ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhcccc----------CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 11357888888778888998877664433221 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|++..+++++|+|||+.++|++++.+++.++|.+++..+++.++++++..|++.++||+|+++++++....+.++.
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~ 231 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANE 231 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888776778
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
|+.+.|..+++....+.++.+++++..+++.+++.++++|...|++...++..|..++.+.
T Consensus 232 It~~~V~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~ 311 (830)
T PRK07003 232 VTETAVSGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAAD 311 (830)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHH
Confidence 9999999999999999999999999999999999999999999998887776665554431
Q ss_pred -----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++.+.+..++.++.+.+..++...++++.+|..++++...
T Consensus 312 ~~~~a~~~s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~ 358 (830)
T PRK07003 312 LRRFAELLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAF 358 (830)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 467788889999999999999999999999999999999854
No 8
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.2e-47 Score=362.56 Aligned_cols=310 Identities=21% Similarity=0.303 Sum_probs=278.6
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC------------------
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE------------------ 110 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~------------------ 110 (382)
.|.+||||++|+|++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 47799999999999999999999999999999999 89999999999999999999999853
Q ss_pred --CCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEE
Q 016800 111 --LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (382)
Q Consensus 111 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~ 188 (382)
..+.+++++++....+++.+++........... ++++|+||||+|.|+.+++|+|+++||+++.+++|
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~----------~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQ----------SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhc----------CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 123567888887777899988766554333222 27899999999999999999999999999999999
Q ss_pred EEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCC
Q 016800 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSS 267 (382)
Q Consensus 189 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~ 267 (382)
|++|+.+.+++++|+|||+.++|.+++.+++.+||.++++++|+.++++++..+++.++||+|.++++|++++.+. ++.
T Consensus 152 IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~ 231 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTH 231 (584)
T ss_pred EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876 578
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++......++++++++..++...++.++.+++..|.++..++..+..+++..
T Consensus 232 It~~~v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~ 311 (584)
T PRK14952 232 VTYQRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPE 311 (584)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCH
Confidence 9999999999999999999999999999999999999999999999988887776665431
Q ss_pred ----------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHH
Q 016800 329 ----------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 329 ----------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
..|+...+.++++.+.+....++.+.++++.+|.++++++.
T Consensus 312 ~~~~~l~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~ 362 (584)
T PRK14952 312 DVLERMREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL 362 (584)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence 24777888889998888888888889999999999999984
No 9
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.7e-47 Score=360.74 Aligned_cols=314 Identities=20% Similarity=0.276 Sum_probs=281.3
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|+|++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred CchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 56789999999999999999999999999999999999 899999999999999999999998632
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...+++++++....+++.+++.+......... ++++|+||||+|.|+.+++|+|+++||+|++++.
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~----------~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTK----------GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhcccc----------CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 22357889988778899999877765443322 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+++.+++++|+|||..++|.+++.+++..++.++++++|+.++++++..|++.++|++|.+++++++++.+.++.
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~ 231 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGK 231 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776678
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.++++...+..++++++++..++.+.++..+++|+..|.++..++..+..++...
T Consensus 232 It~~~V~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (509)
T PRK14958 232 VLIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLR 311 (509)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999988877765554431
Q ss_pred ---CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 ---EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 ---~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++.+.+..++..+......++...++++.+|..+++++..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 356 (509)
T PRK14958 312 QLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAF 356 (509)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhc
Confidence 345666666677788888889999999999999999999854
No 10
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.6e-47 Score=368.21 Aligned_cols=315 Identities=23% Similarity=0.330 Sum_probs=281.1
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|++++||+++++.|.+++..++++| +||+||+|+|||++|+.|++.++|...
T Consensus 2 sY~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 2 SYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 46799999999999999999999999999999999999 699999999999999999999998632
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
....++++++.+..+++.+|+.+..+...... ++++|+||||+|+|+.+++|+|+++||+|+.+++
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~----------gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSR----------GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhc----------CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 12345677776657788888877665433222 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.+.+++++|+|||..++|++++.+++..+|.+++..+++.++++++..|+..++|++|.++++++.+..+..+.
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~ 231 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQ 231 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777666678
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
++.+.|.++++......+..+++.+..++...++.++..|+..|.++..++..+..+++..
T Consensus 232 It~~~V~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i 311 (944)
T PRK14949 232 VMLTQVQTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQI 311 (944)
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHH
Confidence 9999999999999888899999999999999999999999999999999988876665531
Q ss_pred ----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 329 ----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..++...+..+++.+.++...|+.+.|+++.||.++++++.+.
T Consensus 312 ~~~a~~~s~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~~~ 358 (944)
T PRK14949 312 RAFAEQLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 (944)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcC
Confidence 2466677888999999999999999999999999999998643
No 11
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-46 Score=353.68 Aligned_cols=310 Identities=21% Similarity=0.334 Sum_probs=280.5
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~----------------- 111 (382)
.|.+||||++|+|++||+++++.|.+.+..++.+| +||+||+|+||||+|+.+++.++|...
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 47899999999999999999999999999999998 999999999999999999999987532
Q ss_pred -CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEE
Q 016800 112 -YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (382)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il 190 (382)
.+.+++++++.+..+++++++.+......+.. ++++|+||||+|.|+.+++|+|+++||+|++++.||+
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~----------~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPIS----------SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhcccc----------CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 34578999998888999999887765544332 2889999999999999999999999999999999999
Q ss_pred eecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCh
Q 016800 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270 (382)
Q Consensus 191 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~ 270 (382)
+++...++.++|+|||+.++|.+++.+++..++.++++++|+.++++++..|++.++|++|.+++++++++.+.++.||.
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~ 231 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISE 231 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888789999
Q ss_pred hhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------
Q 016800 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET---------------------- 328 (382)
Q Consensus 271 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~---------------------- 328 (382)
++|.++++......++++++++..+|..+++.++++|+..| ++..++..+..+++..
T Consensus 232 e~V~~llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T PRK14964 232 KSVRDLLGCVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIK 310 (491)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999865 7888887776544331
Q ss_pred --CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 --EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 --~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..++..+.+....++...++++++|.++++++.+
T Consensus 311 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~~ 354 (491)
T PRK14964 311 SLKIGSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCYL 354 (491)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc
Confidence 016677888899999999999999999999999999999865
No 12
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8e-47 Score=367.19 Aligned_cols=314 Identities=23% Similarity=0.354 Sum_probs=284.5
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------- 112 (382)
+...|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|....
T Consensus 2 sy~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 2 SYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 45678999999999999999999999999999999999 8999999999999999999999986421
Q ss_pred -----CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
..+++++++....+++.+++.+......... ++++|+||||+|.|+..++|+|+++||+|+++++
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~----------~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSR----------SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcccc----------CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 3467888887777888888876654433222 2889999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.++++.++|+|||+.++|.+++.+++..++..+++++|+.++++++..+++.++||+|.++++|+++..+.++.
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~ 231 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDA 231 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888788
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++......++++++++..++..+++.++.++...|.++..++..+..+++..
T Consensus 232 It~edV~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~ 311 (576)
T PRK14965 232 VGDDDVAELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAE 311 (576)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHH
Confidence 9999999999999999999999999999999999999999999999988887765555431
Q ss_pred --------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 --------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 --------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..|+...+..+++.+.++++.++.|.++++.||.++++++..
T Consensus 312 ~~~~~~~A~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~ 361 (576)
T PRK14965 312 LAELRAQAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATL 361 (576)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhc
Confidence 357788899999999999999999999999999999999874
No 13
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.9e-46 Score=363.86 Aligned_cols=317 Identities=22% Similarity=0.314 Sum_probs=286.4
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------- 111 (382)
.....|.+||||++|++++||+++++.|.+++..++.+| +|||||+|+|||++|+.+++.++|...
T Consensus 2 ~~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 2 ENYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred chhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 345789999999999999999999999999999999999 899999999999999999999987431
Q ss_pred ------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCc
Q 016800 112 ------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185 (382)
Q Consensus 112 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~ 185 (382)
.+.++.++++.+..+++.++..+......+..+ +++|+||||+|.|+.+++++|+++||+|+.+
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~----------~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIG----------KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccC----------CcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 235677888876677888888776654433322 8899999999999999999999999999999
Q ss_pred eEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 016800 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~ 265 (382)
++||++++...++.++|+|||..++|.+++.+++..|+.+++.++|+.++++++..|+..++||+|.+++++++++.+.+
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~ 231 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTG 231 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------------
Q 016800 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE------------------ 327 (382)
Q Consensus 266 ~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------------ 327 (382)
+.|+.++|.+.+.....+.++++++++..++..+++..+++|+..|+++..++..+..+++.
T Consensus 232 ~~It~~~V~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~ 311 (614)
T PRK14971 232 GNITYKSVIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGES 311 (614)
T ss_pred CCccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHH
Confidence 67999999999999999999999999999999999999999999999998888776654433
Q ss_pred --------cCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHc
Q 016800 328 --------TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372 (382)
Q Consensus 328 --------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~ 372 (382)
+..++...+.++++.+.+++++++.|.|.+++||.++++++....
T Consensus 312 ~~~~~~~qa~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~~~ 364 (614)
T PRK14971 312 IRQRYLEQAQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLTQ 364 (614)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 146788889999999999999999999999999999999998754
No 14
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.6e-46 Score=356.02 Aligned_cols=314 Identities=22% Similarity=0.296 Sum_probs=281.1
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|+|++||+++++.|.+++.+++++| +||+||+|+|||++++.|++.++|...
T Consensus 2 sy~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 2 SYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred cchhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 46789999999999999999999999999999999999 799999999999999999999998320
Q ss_pred ---------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
...+++++++....+++.+++.+......... ++++|+||||+|.|+..++|+|+++||++
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~----------gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTA----------GRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhc----------CCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 12367888888778899999887765443322 27899999999999999999999999999
Q ss_pred CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+.++.||++|+++.+++++|+|||+.+.|++++.+++.++|.+++.++|+.++++++..|++.++|++|.++++++.+..
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA 231 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------
Q 016800 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET-------------- 328 (382)
Q Consensus 263 ~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------- 328 (382)
+.++.|+.+.|..+++......+..+++.+..++...++.++..+...|.+...++..+...+...
T Consensus 232 ~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~ 311 (700)
T PRK12323 232 YSAGNVSEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDW 311 (700)
T ss_pred hccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhccccc
Confidence 666789999999999999999999999999999999999999999999999766666554443321
Q ss_pred ----------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 ----------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 ----------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++.+.+..++..+.+....++...++++.+|..++++..+
T Consensus 312 ~~~~~~~~~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~ 363 (700)
T PRK12323 312 PEADDIRRLAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAF 363 (700)
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence 247788899999999999999999999999999999999865
No 15
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.6e-46 Score=344.09 Aligned_cols=314 Identities=21% Similarity=0.273 Sum_probs=277.5
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------- 112 (382)
+..+|.+||||++|++++||+++++.|.+.+..++.+| ++|+||+|+|||++|+++++.+.|....
T Consensus 2 ~~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred CcHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 46789999999999999999999999999999999999 7999999999999999999999875311
Q ss_pred -----CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
..++.++++.....++.+++.+......+.. ++++|+||||+|.++..++++|++++|+++.++.
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~----------~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSK----------SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCccc----------CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 1345666665545667777665544322211 2779999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|++..++.++|+|||..++|+|++.+++.+++..+++.+|+.++++++..+++.++||+|.+++.++.++.+..+.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~ 231 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGN 231 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776688
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.++++...+..++++++++..++..+++.++++++..|.++..++..+..+++..
T Consensus 232 It~~~v~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~ 311 (363)
T PRK14961 232 INIKNVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYK 311 (363)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHH
Confidence 9999999999999999999999999999999999999999999999999887776655531
Q ss_pred -------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..+++.+.++...++.+.|+++++|.+++++...
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~~ 360 (363)
T PRK14961 312 NQIQKIAQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINA 360 (363)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHhC
Confidence 346677888899999999999999999999999999999853
No 16
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.1e-46 Score=359.87 Aligned_cols=314 Identities=25% Similarity=0.380 Sum_probs=285.1
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC---------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~--------------- 110 (382)
+...|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|..
T Consensus 2 ~y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 2 MYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred CcHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHH
Confidence 45679999999999999999999999999999999999 89999999999999999999999864
Q ss_pred ---CCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 111 ---LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 111 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
....+++++++....+++.+++.+......+.. ++++|+||||+|.|+..++|+|++++|+|+.+++
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~----------~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~i 151 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSE----------AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVI 151 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCccc----------CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeE
Confidence 224578888887777888888776654433222 2889999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.+++++++|+|||+.+.|.+++.+++..++.++++++|+.++++++..++..++|++|.+++.|+++..+.++.
T Consensus 152 fIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~ 231 (559)
T PRK05563 152 FILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGK 231 (559)
T ss_pred EEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877778
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++......++++++++..++..+++..+.+++..|.++..++..+..+++..
T Consensus 232 It~~~V~~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~ 311 (559)
T PRK05563 232 VTYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTEND 311 (559)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHH
Confidence 9999999999999999999999999999999999999999999999998887776555431
Q ss_pred -------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+.++++.+.+++..++.|.++++.+|.++++++..
T Consensus 312 ~~~~~~a~~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~~ 360 (559)
T PRK05563 312 ELFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQ 360 (559)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhh
Confidence 257888999999999999999999999999999999999984
No 17
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.2e-46 Score=357.71 Aligned_cols=316 Identities=25% Similarity=0.360 Sum_probs=285.6
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------- 111 (382)
....+|.+||||++|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 9 ~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 9 TPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred ccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 456889999999999999999999999999999999998 999999999999999999999998632
Q ss_pred ----------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh
Q 016800 112 ----------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181 (382)
Q Consensus 112 ----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~ 181 (382)
.+.+++++++....+++++++.+......... ++++||||||+|.|+..++|+|+++||+
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~----------a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVS----------ARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhc----------CCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 12356778877777899999877654433332 2789999999999999999999999999
Q ss_pred cCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 182 ~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
|++++.|||+++...+++++|+|||+.++|.+++.+++..||.++++++|+.++++++..|++.++|++|.++++++++.
T Consensus 159 Pp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli 238 (598)
T PRK09111 159 PPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAI 238 (598)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------
Q 016800 262 RLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------- 328 (382)
Q Consensus 262 ~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------- 328 (382)
.+..+.||.++|.++++......++++++++..++..+++..+.+++..|.++..++..+.++++..
T Consensus 239 ~~g~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~ 318 (598)
T PRK09111 239 AHGAGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDP 318 (598)
T ss_pred hhcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 7766789999999999999999999999999999999999999999999999999888776555421
Q ss_pred --------------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 329 --------------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 329 --------------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..++...+.+++..+.++++.++.+.|+.+.+|.++++++.+-
T Consensus 319 ~~~p~~~~kl~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~~ 375 (598)
T PRK09111 319 SLSEAERTRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYAA 375 (598)
T ss_pred cCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhhc
Confidence 3567888999999999999999999999999999999998653
No 18
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.4e-46 Score=358.23 Aligned_cols=315 Identities=22% Similarity=0.327 Sum_probs=283.4
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+.....+||||++|++++||+.+++.|.+++.+++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 2 SYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CcHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 35568899999999999999999999999999999999 999999999999999999999998431
Q ss_pred ------------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHH
Q 016800 112 ------------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179 (382)
Q Consensus 112 ------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~l 179 (382)
.+.++.++++....+++.+++.+..+......+ +++||||||+|.|+..++++|+++|
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~----------~~KVvIIdEad~Lt~~a~naLLK~L 151 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKG----------RYRVYIIDEVHMLSTAAFNAFLKTL 151 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcC----------CCEEEEEeChhhcCHHHHHHHHHHH
Confidence 123566777766667888988776664433322 7899999999999999999999999
Q ss_pred HhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016800 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (382)
Q Consensus 180 e~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~ 259 (382)
|+|++.++||++++...++.++|+|||+.++|.+++.+++..|+.++++.+|+.+++++++.|++.++||+|.+++++++
T Consensus 152 EePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeK 231 (620)
T PRK14954 152 EEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQ 231 (620)
T ss_pred hCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc-----CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------
Q 016800 260 AARLF-----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------ 328 (382)
Q Consensus 260 ~~~~~-----~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------ 328 (382)
+..+. ++.||.++|.++++...++.++++++++..++..+++.++++|+..|.++..++..+.++++..
T Consensus 232 L~~y~~~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~ 311 (620)
T PRK14954 232 VIAFSVGSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNL 311 (620)
T ss_pred HHHhccccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99886 5689999999999999999999999999999999999999999999999998887666655431
Q ss_pred --------------------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 329 --------------------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 329 --------------------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..|+...+.++++.+.+++++++.+.+.++.+|.|+++++++-
T Consensus 312 ~~~~l~~~~~~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 312 RSTRLIERPESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred cccccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 4578888999999999999999999999999999999999864
No 19
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.6e-45 Score=349.09 Aligned_cols=315 Identities=22% Similarity=0.302 Sum_probs=283.1
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------- 111 (382)
++..||.+||||++|+|++||+++++.|.+.+..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 578999999999999999999999999999999999887 999999999999999999999988531
Q ss_pred ---------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
.+.++.++++....+++.+++.+......+.. ++++|+||||+|.++..+++.|++++|+|
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~----------~~~KVvIIDEa~~Ls~~a~naLLk~LEep 155 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQ----------GKHKIFIIDEVHMLSKGAFNALLKTLEEP 155 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcccc----------CCcEEEEEEChhhcCHHHHHHHHHHHhhc
Confidence 23467888887777889999877665433322 27899999999999999999999999999
Q ss_pred CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+.+++||++++...++.++|+|||+.++|.+++.+++..++..+++++|+.++++++..|++.++||+|.++++|++++.
T Consensus 156 p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hcC---CCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------
Q 016800 263 LFG---SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET----------- 328 (382)
Q Consensus 263 ~~~---~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~----------- 328 (382)
+.+ +.||.++|.++++...+..++++++++..++..+++..+++++..|.++..++..+.++++..
T Consensus 236 ~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~ 315 (507)
T PRK06645 236 MSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSL 315 (507)
T ss_pred hhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 653 379999999999999999999999999999999999999999999999999887665544321
Q ss_pred --------------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 --------------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 --------------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..+++.+.+....++...++++.+|.++++++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~ 371 (507)
T PRK06645 316 PIYESFNDRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYS 371 (507)
T ss_pred ccchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 245667888999999999999999999999999999999865
No 20
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.5e-46 Score=351.59 Aligned_cols=313 Identities=21% Similarity=0.295 Sum_probs=280.8
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC----------------
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE---------------- 110 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~---------------- 110 (382)
..+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+++++.++|..
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 4689999999999999999999999999999999999 79999999999999999999998843
Q ss_pred --CCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEE
Q 016800 111 --LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (382)
Q Consensus 111 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~ 188 (382)
....+++++++.+..+++.+++.+......... ++++|+||||+|+|+..++++|+++||+++.++.|
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~----------gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQ----------GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhc----------CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 122367888888777888998877665433322 27899999999999999999999999999999999
Q ss_pred EEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 016800 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (382)
Q Consensus 189 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~I 268 (382)
|++|+.+.++..+++|||..++|.+++.+++..+|.++++++|+.++++++..|++.++||+|.++++++++..+.++.|
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~I 231 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAV 231 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877767889
Q ss_pred ChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------
Q 016800 269 TSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET-------------------- 328 (382)
Q Consensus 269 t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------------- 328 (382)
+.++|..+++......++++++++..++...++..+.++...|.++..++..+...++..
T Consensus 232 T~edV~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~ 311 (702)
T PRK14960 232 HHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAK 311 (702)
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHH
Confidence 999999999999999999999999999999999999999999999887776665544331
Q ss_pred -----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..++..+.+....++...++++.+|.++++++.+
T Consensus 312 ~~~la~~~s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~ 358 (702)
T PRK14960 312 ILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAF 358 (702)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhC
Confidence 356777888999999999999999999999999999999865
No 21
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1e-45 Score=358.38 Aligned_cols=318 Identities=26% Similarity=0.382 Sum_probs=282.5
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------- 111 (382)
++..+|.+||||++|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.++|+..
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 567899999999999999999999999999999999999 899999999999999999999998642
Q ss_pred --CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 016800 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (382)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 189 (382)
.+..++++++....+++.+++.+......+..+ +++|+||||+|.|+.+++++|+++||+|++.++||
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g----------~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS----------KYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC----------CCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 123456677655567888888776655443322 88999999999999999999999999999999999
Q ss_pred EeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 016800 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (382)
Q Consensus 190 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It 269 (382)
++|+.+++++++|+|||+.++|.+++.+++..+|..++.++|+.++++++..++..++|++|.|++++++++.+..+.|+
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It 232 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKIT 232 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877666799
Q ss_pred hhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------
Q 016800 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET--------------------- 328 (382)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------------------- 328 (382)
.++|..+++......++.+++++..++...++.++.+++..|.++..++..+...++..
T Consensus 233 ~e~V~ellg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~ 312 (725)
T PRK07133 233 LKNVEELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLE 312 (725)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHH
Confidence 99999999999999999999999999999999999999999999998887665554431
Q ss_pred -CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHcc
Q 016800 329 -EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373 (382)
Q Consensus 329 -~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~ 373 (382)
-.++...+..+++.+.++...++.++++++++|.+++++++....
T Consensus 313 ~~~~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~~~~ 358 (725)
T PRK07133 313 KLKIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLALSEL 358 (725)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC
Confidence 124566778889999999999999999999999999999976443
No 22
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.1e-46 Score=368.68 Aligned_cols=312 Identities=22% Similarity=0.326 Sum_probs=278.4
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~----------------- 111 (382)
.|.+||||++|++++||+++++.|.+++..++.+| |||+||+|+|||++|+.|++.++|...
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47799999999999999999999999999999999 899999999999999999999998532
Q ss_pred ---CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEE
Q 016800 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (382)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~ 188 (382)
.+.+++++++....+++++++........... +++||+||||+|+|+...+|.|+++||+++.+++|
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~----------~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAE----------SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhc----------CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 23567888887777899998865544332221 28899999999999999999999999999999999
Q ss_pred EEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCC
Q 016800 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSS 267 (382)
Q Consensus 189 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~ 267 (382)
||+|++.++++++|+|||+.+.|.+++.+++..||.++++++|+.++++++..+++.++||+|.++++|++++.+. ++.
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~ 233 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEG 233 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765 467
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++......++++++++..++...++.++.+|+..|+++..++..++++++..
T Consensus 234 IT~e~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~ 313 (824)
T PRK07764 234 VTYERAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPA 313 (824)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCH
Confidence 9999999999999999999999999999999999999999999999877766655544431
Q ss_pred ----------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 329 ----------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 329 ----------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..|+...+.++++.+.++...++.+.+++|.+|.|+++++.-.
T Consensus 314 d~~~~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll~~ 366 (824)
T PRK07764 314 DQLDRMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLLPS 366 (824)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhhc
Confidence 3577788889999999999889999999999999999998543
No 23
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-45 Score=346.56 Aligned_cols=319 Identities=24% Similarity=0.339 Sum_probs=283.5
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~--------------- 111 (382)
...+.+||||++|++++||+.+++.|.+++.+++.+| +||+||+|+|||++|+++++.++|+..
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 5678899999999999999999999999999999999 999999999999999999999998531
Q ss_pred -----------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH
Q 016800 112 -----------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (382)
Q Consensus 112 -----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le 180 (382)
.+.++.++++....+++.+++....+...+..+ +++|+||||+|.|+.++++.|++++|
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~----------~~kvvIIdea~~l~~~~~~~LLk~LE 152 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKG----------RYRVYIIDEVHMLSIAAFNAFLKTLE 152 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcC----------CeEEEEEeChhhCCHHHHHHHHHHHh
Confidence 123566677766667888887666554333222 78999999999999999999999999
Q ss_pred hcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 016800 181 TYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (382)
Q Consensus 181 ~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~ 260 (382)
+|++.+.||++++...++.++|+|||..++|.+++.+++..|+..+++.+|+.+++++++.+++.++||+|.+++.++++
T Consensus 153 ep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl 232 (397)
T PRK14955 153 EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQV 232 (397)
T ss_pred cCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhc-----CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------
Q 016800 261 ARLF-----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------- 328 (382)
Q Consensus 261 ~~~~-----~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------- 328 (382)
..+. +..||.++|.++++...++.++++++++..++..+++.++.+|+..|.++..++..+..+++..
T Consensus 233 ~~~~~~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~ 312 (397)
T PRK14955 233 IAFSVESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLR 312 (397)
T ss_pred HHhccccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 8774 3589999999999999999999999999999999999999999999999988777665554431
Q ss_pred -------------------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHccCCC
Q 016800 329 -------------------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPE 376 (382)
Q Consensus 329 -------------------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~~~~ 376 (382)
..|+.+.+.++++.+.+++++++.|+|+++.+|.|+++++...+..++
T Consensus 313 ~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~~~~~~ 379 (397)
T PRK14955 313 STRLVERPDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIGHPAPT 379 (397)
T ss_pred ccccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhCCCccc
Confidence 468889999999999999999999999999999999999988655443
No 24
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.3e-45 Score=356.10 Aligned_cols=314 Identities=22% Similarity=0.306 Sum_probs=277.7
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|++++||+++++.|.+.+..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 sy~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 2 SYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 46789999999999999999999999999999999999 799999999999999999999998531
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...+++++++....+++.+++.+..+...... ++++|+||||+|.|+..++|+|+++||+|+++++
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~----------g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~ 151 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPAR----------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhc----------CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeE
Confidence 12356778877656888898877665443322 2889999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+++.+++++|+|||..++|.+++.+++..+|.+++..+++.++++++..|+..++|++|.++++++.+..+.++.
T Consensus 152 FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~ 231 (647)
T PRK07994 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQ 231 (647)
T ss_pred EEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877665678
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE-------------------- 327 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------------- 327 (382)
|+.++|..+.+....+.+.++++++..++...++.++.++...|.++..++..+...++.
T Consensus 232 it~~~v~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~ 311 (647)
T PRK07994 232 VTTDDVSAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIEL 311 (647)
T ss_pred cCHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHH
Confidence 999999999998888889999999999999999999999999999887766655443322
Q ss_pred -----cCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 328 -----TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 328 -----~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
...++...+..+++.+.++...|..+.|+++.+|.+++++...
T Consensus 312 ~l~~la~~~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~ 359 (647)
T PRK07994 312 RLRELARTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAF 359 (647)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhc
Confidence 1346777778889999999999999999999999999999855
No 25
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-45 Score=354.87 Aligned_cols=314 Identities=22% Similarity=0.316 Sum_probs=283.6
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+...|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 sy~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred chHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 46789999999999999999999999999999999999 799999999999999999999998521
Q ss_pred ---------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
...+++++++....+++.+++.+......... ++++|+||||+|.|+..++|+|++++|++
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~----------g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP 151 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQ----------GRFKVFMIDEVHMLTNTAFNAMLKTLEEP 151 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCccc----------CCceEEEEEChhhCCHHHHHHHHHhcccC
Confidence 22367888887778889999887664433322 27899999999999999999999999999
Q ss_pred CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+.++.||++|+++.+++.+|+|||..++|++++.+++..+|.+++.++|+.++++++..|++.++||+|.++++++++..
T Consensus 152 P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia 231 (618)
T PRK14951 152 PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIA 231 (618)
T ss_pred CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------
Q 016800 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET-------------- 328 (382)
Q Consensus 263 ~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------- 328 (382)
+.++.||.++|.++++......++.+++++..++...++.++++|...|+++..++..+...++..
T Consensus 232 ~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 311 (618)
T PRK14951 232 FGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAAT 311 (618)
T ss_pred hcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccC
Confidence 767789999999999999999999999999999999999999999999999999888776665431
Q ss_pred -----------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -----------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -----------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..++..+.+....+....++++.+|..++++...
T Consensus 312 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~~ 364 (618)
T PRK14951 312 DPEAAEVARLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAF 364 (618)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence 345777788999999999999999999999999999998854
No 26
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.1e-45 Score=353.98 Aligned_cols=319 Identities=24% Similarity=0.316 Sum_probs=284.8
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+...+.+||||++|++++||+++++.|.+++.+++.+| +||+||+|+|||++|+++++.++|...
T Consensus 2 ~y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 2 SYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 35678999999999999999999999999999999999 999999999999999999999988521
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
.+.+++++++....+++.+++........+.. ++++|+||||+|.|+..++|+|++++|+|+..+.
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~----------~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~v 151 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPAS----------SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIV 151 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhc----------CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEE
Confidence 23466777776556778887765544333322 2889999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++++.+.++.++|+|||+.++|.+++.+++..+|.++++.+|+.++++++..|++.++||+|.+++++++++.+.++.
T Consensus 152 fI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~ 231 (563)
T PRK06647 152 FIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSD 231 (563)
T ss_pred EEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887788
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.++++......++++++++..++..+++.++.+++..|.++..++..+..+++..
T Consensus 232 It~e~V~~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~ 311 (563)
T PRK06647 232 ITLEQIRSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAER 311 (563)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHH
Confidence 9999999999999999999999999999999999999999999999999888776665431
Q ss_pred -----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHccCC
Q 016800 329 -----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMP 375 (382)
Q Consensus 329 -----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~~~ 375 (382)
..|+...+.+++..+.++++.++.+.++++.+|.++++++..-...+
T Consensus 312 l~k~~~~~s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~~~~~ 363 (563)
T PRK06647 312 LPEKLREFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLKDYVP 363 (563)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccCCC
Confidence 24888899999999999999999999999999999999997654433
No 27
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.7e-45 Score=349.58 Aligned_cols=314 Identities=23% Similarity=0.324 Sum_probs=283.7
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------- 112 (382)
+..+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|+...
T Consensus 2 sy~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 2 AYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred cchhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 46789999999999999999999999999999999999 8999999999999999999999886421
Q ss_pred -----CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
..+++++++....+++.+++.+......... ++++|+||||+|.|+..++++|+++||+++.++.
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~----------gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTA----------GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhh----------CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 2356778877777888888877654333222 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.+.++..+|+|||..+.|.+++.+++..+|.++++++|+.++++++..|++.++||+|.++++|+++..+..+.
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~ 231 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGK 231 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776678
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
|+.++|..+++......++++++++..++...++..+++|+..|.++..++..|..+++..
T Consensus 232 It~e~V~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~ 311 (709)
T PRK08691 232 VAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDI 311 (709)
T ss_pred cCHHHHHHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999888776665541
Q ss_pred -----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..++..+.+....++...++++.+|..++++..+
T Consensus 312 ~~~~a~~~~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~ 358 (709)
T PRK08691 312 LHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAF 358 (709)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Confidence 467888899999999999999999999999999999999855
No 28
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.6e-45 Score=348.01 Aligned_cols=314 Identities=22% Similarity=0.313 Sum_probs=275.6
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|+|++||+++++.|.+++.+++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 57799999999999999999999999999999999877 999999999999999999999998531
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
.+.+++++++....+++.++.....+...... ++++||||||+|.|+.++++.|+++||+++..++
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~----------g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~i 151 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPME----------GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVT 151 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhc----------CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEE
Confidence 23457788877667888888755444333222 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.+.++.++|+|||+.++|++++.+++..+|..++..+++.+++++++.|++.++||+|.++++|+++....++.
T Consensus 152 fILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~ 231 (624)
T PRK14959 152 FVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESR 231 (624)
T ss_pred EEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876444568
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++....+.++++++++..++...++.++..|+..|.++..++..+..+++..
T Consensus 232 It~d~V~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~ 311 (624)
T PRK14959 232 LTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPED 311 (624)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHH
Confidence 9999999999999899999999999999999999999999988988877766554444321
Q ss_pred ---------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 ---------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 ---------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..+++.+.++...++.|+|+++++|.++++++.+
T Consensus 312 ~~~~~~~~A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~ 362 (624)
T PRK14959 312 EARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAML 362 (624)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 246667778889999999999999999999999999998743
No 29
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-45 Score=345.62 Aligned_cols=315 Identities=30% Similarity=0.410 Sum_probs=287.4
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC---------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~--------------- 110 (382)
...++..||||++|+|++||+++.+.|.+.+..++.+| |+|+||.||||||+|+.+|+.++|..
T Consensus 2 ~yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 2 SYQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred chHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 35678899999999999999999999999999999999 99999999999999999999999874
Q ss_pred ---CCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 111 ---LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 111 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
....+++++++....+++++|+.+......+.. +++||+||||+|.|+..+.|+|++++|+||.++.
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~----------~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~ 151 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSE----------GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVK 151 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCcc----------ccceEEEEecHHhhhHHHHHHHhcccccCccCeE
Confidence 122467888888888999999987775444332 2899999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
|||+|+++.+++.+|+|||+.+.|.+++.+++...|..++.++++.++++++..+++.++|.+|+++++|+.+..+.++.
T Consensus 152 FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~ 231 (515)
T COG2812 152 FILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGE 231 (515)
T ss_pred EEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.+.|..+++......+..+++++..+|...++..+++++..|.++..++..+..+++..
T Consensus 232 It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (515)
T COG2812 232 ITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIE 311 (515)
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhh
Confidence 9999999999999999999999999999999999999999999999999888777666431
Q ss_pred -------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 329 -------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 329 -------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..++...+..++..+......++.+.++++.+|.+++++...-
T Consensus 312 ~~~~~~a~~~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~~ 361 (515)
T COG2812 312 ERTKELASQISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAA 361 (515)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhc
Confidence 2355666777899999999999999999999999999998764
No 30
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.8e-44 Score=343.63 Aligned_cols=314 Identities=22% Similarity=0.312 Sum_probs=278.9
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred CchhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 46799999999999999999999999999999999999 899999999999999999999987421
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...+++++++....+++.++..+..+...... ++++|+||||+|+|+.++++.|+++||+|++.+.
T Consensus 82 i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~----------g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 82 INNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQ----------GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred HhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhc----------CCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 12366777776667888888877665443322 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|++..+++++|+|||..++|.+++.+++..+|.++++++|+.++++++..|++.++||+|.+++++++++.+.++.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~ 231 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGE 231 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH----------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV---------------------- 325 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~---------------------- 325 (382)
|+.++|+++++....+.++++++++..++..+++..+..+...|.+...++..+...+
T Consensus 232 It~~~V~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 311 (546)
T PRK14957 232 LKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDI 311 (546)
T ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 9999999999998888899999999999999999999999988988877776554110
Q ss_pred -Hh-cCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 326 -VE-TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 326 -~~-~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
.. ...++...+..+++.+.++...++.+.|+++++|..++++...
T Consensus 312 i~~~a~~~s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~ 358 (546)
T PRK14957 312 INNILAKISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAF 358 (546)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 00 1357888889999999999999999999999999999999855
No 31
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.3e-44 Score=341.90 Aligned_cols=313 Identities=27% Similarity=0.369 Sum_probs=278.4
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..||.++|||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred CchHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 46799999999999999999999999999999999999 799999999999999999999987321
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...++++++++...+++.++.........+.. ++++|+||||+|.|+.+++++|++++++|++.++
T Consensus 82 i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~----------~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 82 IDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIK----------GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred HhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCccc----------CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11356677776667788887755443332222 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++++..++++++++|||+.+.|.+++.+++..|+..+++.+|+.++++++..+++.++||+|.++++|++++.+.++.
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~ 231 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGK 231 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777778
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.++++......++++++++..++...++.++.+|...|.++..++..+..+++..
T Consensus 232 It~~~V~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~ 311 (486)
T PRK14953 232 VTIKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFY 311 (486)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHH
Confidence 9999999999999999999999999999999999999999999999999988887766541
Q ss_pred --CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 --EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 --~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..+++.+.++...++. .|+++++|.++++++.+
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~~ 354 (486)
T PRK14953 312 RKLEKPLEALLYLEDVINKAFSEART-RDPLRAYELAILKLLYV 354 (486)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHhh
Confidence 123456677889999999999999 99999999999999865
No 32
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=1.4e-43 Score=326.33 Aligned_cols=314 Identities=41% Similarity=0.717 Sum_probs=280.6
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
....+|.+||||.+|++++|+++++..+..+++.+..|+++|+||+|+|||++++.+++.+.++.+ ...++++++.+..
T Consensus 2 ~~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~~~ 80 (319)
T PRK00440 2 MMEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASDER 80 (319)
T ss_pred CccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEecccccc
Confidence 356789999999999999999999999999999999889999999999999999999999977654 3466777777665
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcc
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 205 (382)
+.+.++..+..+....+.. ..++++|+|||+|.++.+.++.|+++++.++..+.+|++++...++.+++++|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~--------~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 81 GIDVIRNKIKEFARTAPVG--------GAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred chHHHHHHHHHHHhcCCCC--------CCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 5565656565554332111 12578999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHH
Q 016800 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285 (382)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~ 285 (382)
|..++|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++.++.. +..||.++|.++++...+..+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~-~~~it~~~v~~~~~~~~~~~i 231 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT-GKEVTEEAVYKITGTARPEEI 231 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988775 578999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHH
Q 016800 286 EGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364 (382)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~ 364 (382)
+++++++..+++.+++..+++|+. .|+++..++..+..++.. .+++...+.++++.+.+++++++.|.++.++||.|+
T Consensus 232 ~~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~-~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i 310 (319)
T PRK00440 232 REMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWS-LDIPEELKVELIDAIGEADFRITEGANERIQLEALL 310 (319)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999999999984 899999999888766544 479999999999999999999999999999999999
Q ss_pred HHHHHH
Q 016800 365 SNVIRA 370 (382)
Q Consensus 365 ~~l~~~ 370 (382)
++++.+
T Consensus 311 ~~~~~~ 316 (319)
T PRK00440 311 AKLALL 316 (319)
T ss_pred HHHHHh
Confidence 999875
No 33
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=5.4e-44 Score=333.64 Aligned_cols=310 Identities=27% Similarity=0.390 Sum_probs=275.2
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC---------------
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY--------------- 112 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~--------------- 112 (382)
.||.+||||++|++++||+++++.|.+++..++.+| +||+||||+|||++++.+++.+.|+...
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999999999999999999998 8999999999999999999999876321
Q ss_pred ---CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 016800 113 ---KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (382)
Q Consensus 113 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 189 (382)
+.+++++++.+..+.+.++..+......+.. ++++||||||+|.++.++++.|++++++++.++.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~----------~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSS----------GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCccc----------CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 3456777776555666666666554322222 278899999999999999999999999999999999
Q ss_pred EeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 016800 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (382)
Q Consensus 190 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It 269 (382)
++++++.++.++++|||..++|++++.+++..|+..+++++|+.++++++..+++.++||+|.+++.+++++.+.++.||
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it 231 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNIT 231 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777899
Q ss_pred hhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------
Q 016800 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET--------------------- 328 (382)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------------------- 328 (382)
.++|+++++......++++++++..++..+++.++.++...|.++..++..+..+++..
T Consensus 232 ~~~v~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l 311 (355)
T TIGR02397 232 YEDVNELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFL 311 (355)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777665544431
Q ss_pred ----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHH
Q 016800 329 ----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVI 368 (382)
Q Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~ 368 (382)
..|+...+..+++.+.++++++++|.|.++++|.|++++|
T Consensus 312 ~~~a~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 312 KELALKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 4577888899999999999999999999999999999985
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.8e-43 Score=335.51 Aligned_cols=309 Identities=27% Similarity=0.357 Sum_probs=276.8
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC-----------------CC
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE-----------------LY 112 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~-----------------~~ 112 (382)
+.+||||++|+|++||+++++.|.+++..++++| +||+||||+||||+|+++++.+.|.+ ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 4599999999999999999999999999999999 69999999999999999999998743 22
Q ss_pred CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 113 KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
+.++.++++.+..+++.+++........... ++++||||||+|.++...++.|++.+++++.++.||+++
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~----------~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t 153 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPLR----------GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILAT 153 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhcccc----------CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 3467888887777888888764443332221 278999999999999999999999999999999999999
Q ss_pred cCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhh
Q 016800 193 NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272 (382)
Q Consensus 193 ~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~ 272 (382)
+.+.++.++++|||..++|.+++.+++..||.++++++|+.++++++..|++.++||+|.++++|+++..+ ++.||.++
T Consensus 154 ~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~-~~~It~~~ 232 (504)
T PRK14963 154 TEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL-GTPVTRKQ 232 (504)
T ss_pred CChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765 56899999
Q ss_pred HhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------cCCCCHHHHHHHH
Q 016800 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE------------TEDISDEQQARIC 340 (382)
Q Consensus 273 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------~~~~~~~~~~~~~ 340 (382)
|.++++....+.++++++++..++..+++.++++|+..|+++..++..+.++++. .-.++...+..++
T Consensus 233 V~~~l~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~~~~~~~~l 312 (504)
T PRK14963 233 VEEALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAM 312 (504)
T ss_pred HHHHHCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccccCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888872 0135677889999
Q ss_pred HHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 341 ~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..+.+.++++..+.+ +..+|..+++++...
T Consensus 313 ~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~~ 342 (504)
T PRK14963 313 TALDEQMERFARRSD-ALSLELALLHALLAL 342 (504)
T ss_pred HHHHHHHHHHHhccc-hhHHHHHHHHHHhhh
Confidence 999999999988886 788999999998655
No 35
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.5e-43 Score=332.27 Aligned_cols=312 Identities=26% Similarity=0.398 Sum_probs=270.7
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC----------------
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL---------------- 111 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~---------------- 111 (382)
..|.+||||++|++++||+++.+.|.+.+..++.+| +||+||||+||||+|+++++.+.|...
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 468999999999999999999999999999999988 899999999999999999999987532
Q ss_pred --CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 016800 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (382)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 189 (382)
....+.++++....+++.++.......... .. ++++||||||+|.++.++++.|++++++++++++||
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p-~~---------~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRP-ME---------GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHHHHHHHHhhCh-hc---------CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 123578888877778888876444332222 11 278999999999999999999999999999999999
Q ss_pred EeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 016800 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (382)
Q Consensus 190 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It 269 (382)
++++.+.++.++|+|||..+.|.+++.+++..++..+++.+|+.++++++..|++.++||+|.+++.|+.++.+.++.||
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It 231 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIT 231 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC
Confidence 99988889999999999999999999999999999999999999999999999999999999999999998877666799
Q ss_pred hhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhh
Q 016800 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISD-EQQARICKCLAEVDK 348 (382)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 348 (382)
.++|.++++....+.++++++++.++|.++|+.++.+|+..|++|..+++++...+...-.... .....++..+.++-.
T Consensus 232 ~e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~ 311 (472)
T PRK14962 232 LETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILR 311 (472)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988876211222 445667777777777
Q ss_pred HhhcCCChHHHHHHHHHHHHHH
Q 016800 349 CLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 349 ~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
.+...-...+..+.++++++.-
T Consensus 312 ~i~~~e~~~~l~~~~~~~~~~~ 333 (472)
T PRK14962 312 EIKFAEEKRLVCKLGSASIATR 333 (472)
T ss_pred HhCCcchHHHHHHHHHHHHHHh
Confidence 7666667778888888777753
No 36
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.6e-43 Score=327.00 Aligned_cols=315 Identities=21% Similarity=0.328 Sum_probs=279.6
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------CCCceEE
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------YKSRVLE 118 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------~~~~~~~ 118 (382)
....+|.+||||++|++++||+.+.+.+.++++.++.+| ++||||||+|||++++++++.+.|+.. .+..+++
T Consensus 2 ~~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 2 ENFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred cchHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 356799999999999999999999999999999998886 999999999999999999999987432 2345566
Q ss_pred eecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcccc
Q 016800 119 LNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 198 (382)
++.....+.+.++..+......+.. +++++|+|||+|.++...++.|++++++++..+.||++++...++
T Consensus 82 l~~~~~~~~~~i~~l~~~~~~~p~~----------~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVRIPPQT----------GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred eccccCCCHHHHHHHHHHHhhcccc----------CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 6665555667777766654332222 277899999999999999999999999999999999999999999
Q ss_pred chhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhC
Q 016800 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278 (382)
Q Consensus 199 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~ 278 (382)
.++++|||..++|++++.+++..|+..+++++|+.+++++++.++..++||+|.+++.+++++.+.+..||.++|+.+++
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~ 231 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLN 231 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999988766699999999999
Q ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------------CCCC
Q 016800 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET--------------------------EDIS 332 (382)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------------------------~~~~ 332 (382)
......++++++++..++..+++..+++++..|.+|..++..+.++++.. +.|+
T Consensus 232 ~~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~~s 311 (367)
T PRK14970 232 ILDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQKVS 311 (367)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887776554431 4688
Q ss_pred HHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 333 DEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
...+.+++..+.++++++++|.++.+.+|.++++++..
T Consensus 312 ~~~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~~ 349 (367)
T PRK14970 312 QSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASI 349 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999864
No 37
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.6e-43 Score=338.75 Aligned_cols=314 Identities=24% Similarity=0.321 Sum_probs=279.1
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 2 SYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred CcHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 46789999999999999999999999999999999999 799999999999999999999988531
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...+++++++....+++.+++.+........ . ++++|+||||+|.|+.+++|+|+++||++++++.
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~-~---------~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT-R---------GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcc-c---------CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 1235677777666778888877665433222 1 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+++.+++++|+|||..++|++++.+++..++.++++++|+.++++++..|++.++||+|.++++++++..+.++.
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~ 231 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGT 231 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887789
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
|+.++|..+++......++++++++..++...++..+++|...|.+...++..+...++..
T Consensus 232 I~~~~v~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~ 311 (527)
T PRK14969 232 VNESEVRAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDR 311 (527)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHH
Confidence 9999999999998888899999999999999999999999998988887776654443321
Q ss_pred -----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++.+.+..+++.+.++...+...-++++.+|.+++++...
T Consensus 312 ~~~~a~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~ 358 (527)
T PRK14969 312 LLDLAKRLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAF 358 (527)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcc
Confidence 357788889999999999999999999999999999999854
No 38
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.4e-43 Score=342.25 Aligned_cols=312 Identities=25% Similarity=0.349 Sum_probs=278.7
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~--------------- 111 (382)
...|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 ~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 3 VQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred cHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 4568899999999999999999999999999999988 799999999999999999999987532
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
.+.+++++++....+++.+++.+......... ++++||||||+|.|+.++++.|++++|+++.++.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~----------~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv 152 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPAL----------ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAI 152 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCccc----------CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeE
Confidence 12356777776666788888766543322221 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++++..+++.++|+|||..+.|++++..++..++.+++.++|+.++++++..|++.++||+|.++++|++++.+.++.
T Consensus 153 ~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~ 232 (585)
T PRK14950 153 FILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGE 232 (585)
T ss_pred EEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877788
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++......++++++++..++..+++.++.+|+..|.++..++..+.++++..
T Consensus 233 It~e~V~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~ 312 (585)
T PRK14950 233 ISLSQVQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEK 312 (585)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHH
Confidence 9999999999999999999999999999999999999999999999999887665554431
Q ss_pred -------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHH
Q 016800 329 -------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 329 -------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
+.|+...+..++..+.++++.++.|.+.++.+|.++++++.
T Consensus 313 ~~~~~qa~~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~ 360 (585)
T PRK14950 313 AALQKVSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALL 360 (585)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Confidence 46888999999999999999999998889999999999884
No 39
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.6e-43 Score=339.78 Aligned_cols=313 Identities=24% Similarity=0.365 Sum_probs=277.0
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..||.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+++++.++|...
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 46899999999999999999999999999999998866 999999999999999999999998531
Q ss_pred ------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCc
Q 016800 112 ------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185 (382)
Q Consensus 112 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~ 185 (382)
.+.+++++++....+++.+++.+......... ++++|+||||+|.|+.+++++|+++||+++..
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~----------~~~KViIIDEad~Lt~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQ----------ARWKVYVIDECHMLSTAAFNALLKTLEEPPPR 151 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhc----------CCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence 12356677776667788888887664433222 27899999999999999999999999999999
Q ss_pred eEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 016800 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~ 265 (382)
++||++++++.++.++|+|||+.++|.+++.+++..++.+++.++|+.++++++..+++.++|++|.|++++++.+.+.
T Consensus 152 tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~- 230 (620)
T PRK14948 152 VVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLP- 230 (620)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------------
Q 016800 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE------------------ 327 (382)
Q Consensus 266 ~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------------ 327 (382)
+.||.++|..+++......++++++++..++...++.++.+|+..|.++..++..+..+++.
T Consensus 231 ~~It~e~V~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~ 310 (620)
T PRK14948 231 GPITPEAVWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQ 310 (620)
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCH
Confidence 67999999999998888889999999999999999999999999998888766655444332
Q ss_pred ---------cCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 328 ---------TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 328 ---------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
.+.++...+..+++.+.++++.++.+.++++.+|.|++++...
T Consensus 311 d~~~~l~~~A~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~ 362 (620)
T PRK14948 311 QTWDELCKLAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPS 362 (620)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhcc
Confidence 1357788899999999999999999999999999999999865
No 40
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.8e-42 Score=329.64 Aligned_cols=271 Identities=24% Similarity=0.427 Sum_probs=246.2
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------- 112 (382)
+..+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|.++.
T Consensus 2 ~~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred cchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 35789999999999999999999999999999999998 9999999999999999999999986432
Q ss_pred -----CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
+.+++++++....+++.+++.+..+...+..+ +++|+||||+|.|+.+++++|+++||+|+++++
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~----------~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tv 151 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTF----------KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVV 151 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhC----------CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEE
Confidence 23567777766678888888776655443322 789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.+.++.++|+|||+.++|.+++.+++..||..++.++|+.++++++..+++.++||+|.|+++++.++.+.+..
T Consensus 152 fIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~ 231 (605)
T PRK05896 152 FIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSE 231 (605)
T ss_pred EEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887767
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE 327 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (382)
|+.++|.++++......++++++++..++..+++.++.+|+..|.++..++..+..+++.
T Consensus 232 It~e~V~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RD 291 (605)
T PRK05896 232 IDIEDINKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLID 291 (605)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999998888889999999999999999999999999999999999988777665
No 41
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=6.8e-42 Score=317.36 Aligned_cols=306 Identities=33% Similarity=0.556 Sum_probs=263.3
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc---
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--- 125 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--- 125 (382)
.+|.+||||.+|++++|++.+++.|.+++..++.||++|+||||+|||++|+++++.+.+..+ ...++++++.+..
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-ENNFTEFNVADFFDQG 81 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-ccceEEechhhhhhcc
Confidence 489999999999999999999999999999999899999999999999999999999976542 2345566654321
Q ss_pred -----------------------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 126 -----------------------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 126 -----------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
..+.++..+..+...... .+++++|||||++.++.+.++.|+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vlilDe~~~l~~~~~~~L~~~le~~ 152 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL---------SADYKTILLDNAEALREDAQQALRRIMEQY 152 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC---------CCCCcEEEEeCcccCCHHHHHHHHHHHHhc
Confidence 011122222222211111 125689999999999999999999999999
Q ss_pred CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+..++||++++.+.++.+++++||..+.|.+++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++..+.
T Consensus 153 ~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~ 232 (337)
T PRK12402 153 SRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAAL 232 (337)
T ss_pred cCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88899999998888899999999999999999999999999999999999999999999999999999999999998774
Q ss_pred hcCCCCChhhHhhhhCC-CCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 016800 263 LFGSSITSKDLISVSGV-IPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARIC 340 (382)
Q Consensus 263 ~~~~~It~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 340 (382)
. ++.||.++|.+++.. ..+..++++++++..++..+++.++++|+ ..|+++..++..+...+.. .|+...+.+++
T Consensus 233 ~-~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~--~~~~~~l~~~~ 309 (337)
T PRK12402 233 A-AGEITMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARS--RYRGDNLARLH 309 (337)
T ss_pred c-CCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HCCHHHHHHHH
Confidence 2 468999999999887 56889999999999999999999999997 7999999999998776555 49999999999
Q ss_pred HHHHHHhhHhhcCCChHHHHHHHHHHH
Q 016800 341 KCLAEVDKCLVDGADEYLQLLDVASNV 367 (382)
Q Consensus 341 ~~~~~~~~~l~~g~~~~l~l~~l~~~l 367 (382)
..+.+++++++.|.++.++||.|+.++
T Consensus 310 ~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 310 RLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 999999999999999999999999876
No 42
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-40 Score=278.68 Aligned_cols=315 Identities=27% Similarity=0.437 Sum_probs=259.3
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC------------------
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL------------------ 111 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~------------------ 111 (382)
.|.++|||..++.++++++....+......+..||++||||+|+||.|.+.++.+++++++.
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 59999999999999999999999999999899999999999999999999999999998652
Q ss_pred -----CCCceEEeecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC
Q 016800 112 -----YKSRVLELNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184 (382)
Q Consensus 112 -----~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~ 184 (382)
.....++++++|... ...+.+.++..++...-.. .....+++|+|.|+|.++.++|.+|+++||.+..
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~-----~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-----QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-----ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 122446667766432 3346777777775543221 1122789999999999999999999999999999
Q ss_pred ceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 016800 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~ 264 (382)
++++|++||+.+++.++|+|||..++.+.|+++|+...+..+++++|+.++.+.+..|++.|+||+|+|+-+++......
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999776542
Q ss_pred CCCCChhhHhhhhCCCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 016800 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSG----DFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340 (382)
Q Consensus 265 ~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 340 (382)
...+.+. .....-..+..+.++.+.+... ..-+.+..+++|+..+.+|.-|+..+...+.. ..+......++
T Consensus 237 -~~~~a~~-~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~--~~d~~~k~~~~ 312 (351)
T KOG2035|consen 237 -EPFTANS-QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL--KCDTQLKLEVI 312 (351)
T ss_pred -ccccccC-CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh--cCCchhHHHHH
Confidence 2222111 1111111123334444444442 34567778999999999999999999988877 57777788999
Q ss_pred HHHHHHhhHhhcCCChHHHHHHHHHHHHHHHcc
Q 016800 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373 (382)
Q Consensus 341 ~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~ 373 (382)
+..+++++++..|.....|||+|++++|.+|++
T Consensus 313 ~~Aa~yEhRl~lG~KaIfHLEaFVA~fM~iy~~ 345 (351)
T KOG2035|consen 313 QHAAKYEHRLRLGQKAIFHLEAFVAKFMCIYKK 345 (351)
T ss_pred HHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999865
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.5e-39 Score=283.50 Aligned_cols=299 Identities=27% Similarity=0.331 Sum_probs=252.4
Q ss_pred chhhhhcCCCCCCcccCcHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.|+.+++||.+++|++||++.+ +-|.+.++.+.+++++|||||||||||+|+.++... +..|..+++.. .
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~------~~~f~~~sAv~-~ 84 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT------NAAFEALSAVT-S 84 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh------CCceEEecccc-c
Confidence 4999999999999999999999 789999999999999999999999999999999987 56788888876 4
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee--cCccccchhhh
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLA 203 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~--~~~~~l~~~l~ 203 (382)
++.+++..++........ +++.|++|||+|++++..|+.|+..+|+. ...+|-+| |+.+.+.++|+
T Consensus 85 gvkdlr~i~e~a~~~~~~----------gr~tiLflDEIHRfnK~QQD~lLp~vE~G--~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 85 GVKDLREIIEEARKNRLL----------GRRTILFLDEIHRFNKAQQDALLPHVENG--TIILIGATTENPSFELNPALL 152 (436)
T ss_pred cHHHHHHHHHHHHHHHhc----------CCceEEEEehhhhcChhhhhhhhhhhcCC--eEEEEeccCCCCCeeecHHHh
Confidence 788888888776443322 16789999999999999999999999974 33344444 56678999999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHH--hCCC-----CCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--CCCChhhHh
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNE--EGLN-----LDAEALSTLSSISQGDLRRAITYLQGAARLFG--SSITSKDLI 274 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~--~~~~-----~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~--~~It~~~v~ 274 (382)
|||+++.|+|++.+++...+.+.+.. .|+. +++++.+.++..++||.|.++|.|+.++.... ..++.+.++
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~ 232 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLE 232 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 99999999999999999999985443 3443 77999999999999999999999998887762 345578887
Q ss_pred hhh----------CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 016800 275 SVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344 (382)
Q Consensus 275 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (382)
+++ +..+++.++.++++++..|.++++.|+.+|+..|.+|..|.+++.....+ +++.+....+.-.++
T Consensus 233 ~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsE--DIGlAdP~Al~~a~a 310 (436)
T COG2256 233 EILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASE--DIGLADPNALQVAVA 310 (436)
T ss_pred HHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--hccCCChhHHHHHHH
Confidence 777 35678889999999999999999999999999999999999999876655 788877777777777
Q ss_pred HHhhHhhcCCCh-HHHHHHHHHHHH
Q 016800 345 EVDKCLVDGADE-YLQLLDVASNVI 368 (382)
Q Consensus 345 ~~~~~l~~g~~~-~l~l~~l~~~l~ 368 (382)
..+.....|.++ ++.|...++.|+
T Consensus 311 a~da~~~lG~PE~~i~LAqavvyLA 335 (436)
T COG2256 311 ALDAVERLGSPEARIALAQAVVYLA 335 (436)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHH
Confidence 788888889754 777777777666
No 44
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=100.00 E-value=1e-38 Score=274.13 Aligned_cols=322 Identities=34% Similarity=0.473 Sum_probs=285.2
Q ss_pred ccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 45 ~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.....||.++|+|..+.++++|++++..+.++...+++||+|||||||+|||+...+.++.+.|+......+.++|+++.
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 45678999999999999999999999999999999999999999999999999999999999997655666889999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCC-CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhh
Q 016800 125 RGINVVRTKIKTFAAVAVGSGQRRGGYP-CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 203 (382)
++++.++..+..|........ +. ...+++||+||+|.|+.++||+|++.+|.+..+++|++++|++.++.++++
T Consensus 105 rgid~vr~qi~~fast~~~~~-----fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~q 179 (360)
T KOG0990|consen 105 RGIDPVRQQIHLFASTQQPTT-----YSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQ 179 (360)
T ss_pred cCCcchHHHHHHHHhhcccee-----ccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhh
Confidence 999999999988876542211 11 126799999999999999999999999999999999999999999999999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC----CCCChhhHhhhhCC
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSITSKDLISVSGV 279 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~----~~It~~~v~~~~~~ 279 (382)
|||+.++|.|++.++....+.++++.+....+++....+++.+.||+|.++|.||....+.+ .+++.+.+....+.
T Consensus 180 sRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~ 259 (360)
T KOG0990|consen 180 SRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGA 259 (360)
T ss_pred cccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998887652 34666779999999
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHH
Q 016800 280 IPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYL 358 (382)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l 358 (382)
.....+..+++.+....+.++..-+..+. ..|.+..+++..+..++... .+.......++..++++++.+..|.+.++
T Consensus 260 p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~-~~~~~~~~~I~~~l~~Ie~~ls~g~~~~~ 338 (360)
T KOG0990|consen 260 PQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIV-ISKTPVEGHILYQLADIEERLSKGCMQKE 338 (360)
T ss_pred CChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH-hcchHHHHHHHHhHHHHHHHHhcchhHHH
Confidence 98999999999999999988777777775 47788888888887776653 34457788999999999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 016800 359 QLLDVASNVIRAVC 372 (382)
Q Consensus 359 ~l~~l~~~l~~~~~ 372 (382)
++.+++..+...++
T Consensus 339 ql~aii~~~~~~~~ 352 (360)
T KOG0990|consen 339 QLKAIIKNFAAELK 352 (360)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 45
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=100.00 E-value=2e-36 Score=277.88 Aligned_cols=300 Identities=27% Similarity=0.381 Sum_probs=250.4
Q ss_pred ccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 45 ~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.....+|.+||||.+|++++||+++.+.+..+++.++.|| ++|+||+|+|||++++++++.+ ...+.++++.+
T Consensus 5 ~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~------~~~~~~i~~~~ 78 (316)
T PHA02544 5 NPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV------GAEVLFVNGSD 78 (316)
T ss_pred CCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CccceEeccCc
Confidence 4567899999999999999999999999999999999999 5669999999999999999987 23567778776
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC-CHHHHHHHHHHHHhcCCceEEEEeecCccccchhh
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 202 (382)
. ..+.+++.+..+....... +++++|||||+|.+ +.++++.|..++++++..+.||+++|...++.++|
T Consensus 79 ~-~~~~i~~~l~~~~~~~~~~---------~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 79 C-RIDFVRNRLTRFASTVSLT---------GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred c-cHHHHHHHHHHHHHhhccc---------CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH
Confidence 3 3555666565554332211 26789999999999 67778889889999999999999999999999999
Q ss_pred hcccceEEecCCCHHHHHHHHH-------HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhh
Q 016800 203 ASRCAKFRFKPLSEEVMSSRVL-------HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275 (382)
Q Consensus 203 ~sr~~~i~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~ 275 (382)
+|||..+.|++|+.++...++. .++..+|+.++++++..+++.+.||+|.+++.++..+. ++.|+.+++..
T Consensus 149 ~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~--~~~i~~~~l~~ 226 (316)
T PHA02544 149 RSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS--TGKIDAGILSE 226 (316)
T ss_pred HhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc--cCCCCHHHHHH
Confidence 9999999999999988775543 44556799999999999999999999999999997654 46788888776
Q ss_pred hhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCC
Q 016800 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGAD 355 (382)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 355 (382)
+. ...++.+++++...+..+.... .. ..+.++..++..+.+.+.. .+....+.++++.+++++..+..|.|
T Consensus 227 ~~----~~~~~~l~~~l~~~d~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (316)
T PHA02544 227 VT----NSDIDDVVEALKAKDFKAVRAL-AP--NYANDYASFVGKLYDELYP--QVTPPSIIRLIEIIGENNQYHGFAAD 297 (316)
T ss_pred hh----HHHHHHHHHHHHcCCHHHHHHH-HH--HhccCHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 54 5667888999999988887773 22 2367888999888777766 46888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 016800 356 EYLQLLDVASNVIRAV 371 (382)
Q Consensus 356 ~~l~l~~l~~~l~~~~ 371 (382)
+.++++.|++++|..+
T Consensus 298 ~~l~le~~l~~~~~~~ 313 (316)
T PHA02544 298 QEIHLLYLLTQLMLEC 313 (316)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999654
No 46
>PRK04132 replication factor C small subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=291.83 Aligned_cols=275 Identities=40% Similarity=0.637 Sum_probs=249.3
Q ss_pred EEEeC--CCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 85 MLFYG--PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 85 lll~G--p~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
.++.| |.+.||||+|+++++.+++.+ +..+++++|+++.++++.+++.++.+....... .++++|+|||
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~--------~~~~KVvIID 637 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGEN-WRHNFLELNASDERGINVIREKVKEFARTKPIG--------GASFKIIFLD 637 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC--------CCCCEEEEEE
Confidence 56778 888999999999999997754 456899999999889999999998877543321 1257999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 016800 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTL 242 (382)
Q Consensus 163 e~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 242 (382)
|+|.|+.++|++|+++||+|+.++.||++||++.++.++|+|||+.+.|++++.+++...|.++++++|+.++++++..|
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~I 717 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 717 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 016800 243 SSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQL 321 (382)
Q Consensus 243 ~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l 321 (382)
+..++||+|.|++.||.++.. ...||.++|..+.+......+.++++.+..+++.+++..+++++ ..|+++..++..+
T Consensus 718 a~~s~GDlR~AIn~Lq~~~~~-~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l 796 (846)
T PRK04132 718 LYIAEGDMRRAINILQAAAAL-DDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQM 796 (846)
T ss_pred HHHcCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999987754 46799999999999988889999999999999999999999987 7999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 322 FDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
...+... .++......++..++++++++..|.++.++|++|+++++.+
T Consensus 797 ~~~l~~~-~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~ 844 (846)
T PRK04132 797 HREVFNL-PIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM 844 (846)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhh
Confidence 9888653 47788888999999999999999999999999999999753
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=4.4e-35 Score=267.39 Aligned_cols=282 Identities=17% Similarity=0.280 Sum_probs=219.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--CCCceEEeec--CCCcchHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNA--SDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~--~~~~~~~~~~--~~~~~~~~~~~ 132 (382)
++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|... .+.++..+.+ ....+++++++
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~ 80 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRN 80 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHH
Confidence 578999999999999999999999999 799999999999999999999988642 2335555544 23356788888
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEec
Q 016800 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212 (382)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 212 (382)
.+..+...+.. +++||+|||++|.|+.+++|+|++++|+||+++.||++|+++++++++|+|||+.++|.
T Consensus 81 ~~~~~~~~p~~----------~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~ 150 (313)
T PRK05564 81 IIEEVNKKPYE----------GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLN 150 (313)
T ss_pred HHHHHhcCccc----------CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCC
Confidence 77655433322 28899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHH
Q 016800 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVC 292 (382)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~ 292 (382)
+++.+++..|+...+. .++++.++.++..++|++..|...+...... . ....++++++++
T Consensus 151 ~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~~~--------~--------~~~~~~~~~~~l 210 (313)
T PRK05564 151 RLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDSLK--------N--------IRNMSLEILKDI 210 (313)
T ss_pred CcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccHHH--------H--------HHHHHHHHHHHH
Confidence 9999999999975442 4688889999999999999987665432210 0 023445555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------------------cCCCCHHHHHHHHHHHHHHh
Q 016800 293 RSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE-------------------------TEDISDEQQARICKCLAEVD 347 (382)
Q Consensus 293 ~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~ 347 (382)
..++...++.++..+...+.++..++..+..+++. ...++.+.+..+++.+.+++
T Consensus 211 ~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L~~~~~~l~~~~ 290 (313)
T PRK05564 211 KKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMIEIINDTR 290 (313)
T ss_pred HcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 55555555555555544444444433322222211 13678889999999999999
Q ss_pred hHhhcCCChHHHHHHHHHHHHH
Q 016800 348 KCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 348 ~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
+.++.|+|+++++|.+++++.+
T Consensus 291 ~~l~~n~n~~l~le~lll~~~~ 312 (313)
T PRK05564 291 DNLSSNVNPTLVFDSMLIKMQE 312 (313)
T ss_pred HHHHHcCCccHHHHHHHHhhhc
Confidence 9999999999999999999864
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=2.3e-34 Score=271.82 Aligned_cols=297 Identities=27% Similarity=0.333 Sum_probs=241.2
Q ss_pred hhhhhcCCCCCCcccCcHHHHHH---HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRV---LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~---l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
||.++|||.+|++++||++++.. +.+++..+..++++|+||||||||++|+.+++.. +..+..+++... +
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~------~~~~~~l~a~~~-~ 73 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT------DAPFEALSAVTS-G 73 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecccc-c
Confidence 79999999999999999999766 9999999998889999999999999999999987 345677777653 5
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee--cCccccchhhhc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLAS 204 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~--~~~~~l~~~l~s 204 (382)
...++..+......... +++.+|+|||+|.++...++.|+..+++. ...+|.++ |....+.++++|
T Consensus 74 ~~~ir~ii~~~~~~~~~----------g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 74 VKDLREVIEEARQRRSA----------GRRTILFIDEIHRFNKAQQDALLPHVEDG--TITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHHHHHHHHHHHHhhhc----------CCceEEEEechhhhCHHHHHHHHHHhhcC--cEEEEEeCCCChhhhccHHHhc
Confidence 56666655554322211 16689999999999999999999999873 34445444 334578899999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHHHh--CC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCC--
Q 016800 205 RCAKFRFKPLSEEVMSSRVLHICNEE--GL-NLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV-- 279 (382)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~-- 279 (382)
||..+.|++++.+++..++.+.+... ++ .+++++++.+++.++||+|.+++.++.++.. +..|+.+++..+++.
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~-~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG-VDSITLELLEEALQKRA 220 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCCCHHHHHHHHhhhh
Confidence 99999999999999999999987653 44 7899999999999999999999999988765 678999999988863
Q ss_pred --------CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhh
Q 016800 280 --------IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLV 351 (382)
Q Consensus 280 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (382)
.+.+.+..+++++...|.+.++.|+..|+..|++|..|++++...+.+ +++.+....+.-..+..+..-.
T Consensus 221 ~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e--dig~a~~~~~~~~~~~~~~~~~ 298 (413)
T PRK13342 221 ARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE--DIGLADPNALQVAVAAADAVER 298 (413)
T ss_pred hccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--hhcccCHHHHHHHHHHHHHHHH
Confidence 235567778888889999999999999999999999999999887766 5666655555555666666667
Q ss_pred cCCCh-HHHHHHHHHHHH
Q 016800 352 DGADE-YLQLLDVASNVI 368 (382)
Q Consensus 352 ~g~~~-~l~l~~l~~~l~ 368 (382)
.|.++ ++.|...++-++
T Consensus 299 ~g~pe~~~~l~~~~~~l~ 316 (413)
T PRK13342 299 IGMPEGRIALAQAVIYLA 316 (413)
T ss_pred hCCcHHHHHHHHHHHHHH
Confidence 88754 677776666655
No 49
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=7.7e-34 Score=280.10 Aligned_cols=302 Identities=22% Similarity=0.285 Sum_probs=236.3
Q ss_pred CCchhhhhcCCCCCCcccCcHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
...||.++|||.+|+|++||++++ ..+.+.+..++.++++|+|||||||||+|+++++... ..+..+++..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~------~~f~~lna~~ 87 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR------AHFSSLNAVL 87 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc------Ccceeehhhh
Confidence 455999999999999999999998 4788899999999999999999999999999999863 3456666653
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee--cCccccchh
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEP 201 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~--~~~~~l~~~ 201 (382)
.++..+++.+.......... +++.++||||+|.++...++.|+..+++. ...+|.++ |....+.++
T Consensus 88 -~~i~dir~~i~~a~~~l~~~---------~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 88 -AGVKDLRAEVDRAKERLERH---------GKRTILFIDEVHRFNKAQQDALLPWVENG--TITLIGATTENPYFEVNKA 155 (725)
T ss_pred -hhhHHHHHHHHHHHHHhhhc---------CCceEEEEeChhhCCHHHHHHHHHHhcCc--eEEEEEecCCChHhhhhhH
Confidence 34445555444432211111 15679999999999999999999999863 33344433 333568899
Q ss_pred hhcccceEEecCCCHHHHHHHHHHHHH-------HhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--C--C--CC
Q 016800 202 LASRCAKFRFKPLSEEVMSSRVLHICN-------EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--G--S--SI 268 (382)
Q Consensus 202 l~sr~~~i~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~--~--~--~I 268 (382)
+.|||.++.|++++.+++..++.+.+. .+++.+++++++.|++.++||+|.+++.|+.++... + . .|
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~I 235 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDI 235 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceec
Confidence 999999999999999999999999887 456789999999999999999999999999876533 1 1 27
Q ss_pred ChhhHhhhh----------CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHH
Q 016800 269 TSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338 (382)
Q Consensus 269 t~~~v~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~ 338 (382)
|.+.+++.+ +..+++.+.+++++++.+|+++++.|+.+|+..|++|..|++++.....+ +++.+....
T Consensus 236 t~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asE--digladp~a 313 (725)
T PRK13341 236 TLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASE--DVGLADPQA 313 (725)
T ss_pred cHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccCCCChHH
Confidence 777777654 34678999999999999999999999999999999999999999887765 566654455
Q ss_pred HHHHHHHHhhHhhcCCCh-HHHHHHHHHHHH
Q 016800 339 ICKCLAEVDKCLVDGADE-YLQLLDVASNVI 368 (382)
Q Consensus 339 ~~~~~~~~~~~l~~g~~~-~l~l~~l~~~l~ 368 (382)
+.-.++.++.....|.++ ++.+..+.+-++
T Consensus 314 l~~~~~~~~a~~~~g~pE~~~~laq~~~~la 344 (725)
T PRK13341 314 LVVVEACAAAFERVGLPEGLYPLAQAALYLA 344 (725)
T ss_pred HHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Confidence 555566666666778644 555555554444
No 50
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-33 Score=246.02 Aligned_cols=297 Identities=22% Similarity=0.299 Sum_probs=244.6
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
++-.+.|+.++.||.+++|.+||++++ ..|+.+++++++|.++||||||||||++|+.++.....+ ...++++.
T Consensus 121 ~~~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~---SyrfvelS 197 (554)
T KOG2028|consen 121 QMLQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH---SYRFVELS 197 (554)
T ss_pred HHhccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC---ceEEEEEe
Confidence 445788999999999999999999998 578999999999999999999999999999999876333 25678887
Q ss_pred cCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee--cCcccc
Q 016800 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRI 198 (382)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~--~~~~~l 198 (382)
+... ...++|..++..-...... +++.|++|||++++++..|+.|+..+|... ..+|-.| |+.+.+
T Consensus 198 At~a-~t~dvR~ife~aq~~~~l~---------krkTilFiDEiHRFNksQQD~fLP~VE~G~--I~lIGATTENPSFql 265 (554)
T KOG2028|consen 198 ATNA-KTNDVRDIFEQAQNEKSLT---------KRKTILFIDEIHRFNKSQQDTFLPHVENGD--ITLIGATTENPSFQL 265 (554)
T ss_pred cccc-chHHHHHHHHHHHHHHhhh---------cceeEEEeHHhhhhhhhhhhcccceeccCc--eEEEecccCCCccch
Confidence 7653 5677777776644433332 267899999999999999999999998753 3344443 556789
Q ss_pred chhhhcccceEEecCCCHHHHHHHHHHHHHH----h----C-----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-
Q 016800 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNE----E----G-----LNLDAEALSTLSSISQGDLRRAITYLQGAARLF- 264 (382)
Q Consensus 199 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~----~-----~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~- 264 (382)
..++.|||.++.+++++.+.+..+|.+.... + + +.+++..++.++..+.||.|.++|.|+......
T Consensus 266 n~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~ 345 (554)
T KOG2028|consen 266 NAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFC 345 (554)
T ss_pred hHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999884431 1 1 136788999999999999999999999763322
Q ss_pred -------CCCCChhhHhhhh----------CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 016800 265 -------GSSITSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE 327 (382)
Q Consensus 265 -------~~~It~~~v~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (382)
...++.++|++.+ +..++..+..+.++++.+|.++.+-|+.+|++.|++|.++.+++.++..+
T Consensus 346 tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASE 425 (554)
T KOG2028|consen 346 TRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASE 425 (554)
T ss_pred hhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhc
Confidence 2378999999887 55678899999999999999999999999999999999999999997766
Q ss_pred cCCCCHHHHHHHHHHHHHHhhHhhcCCChH
Q 016800 328 TEDISDEQQARICKCLAEVDKCLVDGADEY 357 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 357 (382)
+++......+-...+.++.....|.++.
T Consensus 426 --DIGlaD~S~L~~Avaa~qav~~vGmPE~ 453 (554)
T KOG2028|consen 426 --DIGLADPSALTQAVAAYQAVHFVGMPEC 453 (554)
T ss_pred --ccCcCCchhhHHHHHHHHHHHHhCCchH
Confidence 7777766667777888888888998664
No 51
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.2e-32 Score=248.42 Aligned_cols=273 Identities=19% Similarity=0.256 Sum_probs=200.3
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------CCCceEEeecC---
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------YKSRVLELNAS--- 122 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------~~~~~~~~~~~--- 122 (382)
.|++++||+++++.|.+.+.+++.+| +||+||+|+||+++|.++++.++|... .+.++..+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 57899999999999999999999988 999999999999999999999998741 22333333321
Q ss_pred --------------------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 123 --------------------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 123 --------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
....++.+++....+...+.. ++++|+|||++|.|+..++|+|+++||+|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~----------~~~kVvII~~ae~m~~~aaNaLLK~LEEP 151 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLE----------APRKVVVIEDAETMNEAAANALLKTLEEP 151 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCccc----------CCceEEEEEchhhcCHHHHHHHHHHHhCC
Confidence 012356666654443332222 28899999999999999999999999999
Q ss_pred CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
| ++.||+++++++++++||+|||+.++|++++.+++.++|......++. +.....++..++|+++.|++.++....
T Consensus 152 p-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~~~~~~l~~~a~Gs~~~al~~l~~~~~ 227 (314)
T PRK07399 152 G-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---NINFPELLALAQGSPGAAIANIEQLQS 227 (314)
T ss_pred C-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---hhHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9 889999999999999999999999999999999999999876543322 122567899999999999998865432
Q ss_pred hcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHH-HHHHHHHHHHhcCCCCHHHHHHHH
Q 016800 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASL-LLSQLFDVVVETEDISDEQQARIC 340 (382)
Q Consensus 263 ~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~-i~~~l~~~~~~~~~~~~~~~~~~~ 340 (382)
. ...+...+..+. ++...++.+-..+. ..+..... ++.-+..++... .....++
T Consensus 228 ~------------------~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~~-----~~~~~~~ 283 (314)
T PRK07399 228 I------------------PPELLQKLEQPP-KSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQK-----TKNRQLL 283 (314)
T ss_pred H------------------HHHHHHHHHhcc-cCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----hcchHHH
Confidence 1 111122222222 45666666544443 22222222 223332233221 1257889
Q ss_pred HHHHHHhhHhhcCCChHHHHHHHHHHHHH
Q 016800 341 KCLAEVDKCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 341 ~~~~~~~~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
+.+.++.+.+.+|+|++++++.++++++.
T Consensus 284 ~~l~~a~~~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 284 KQLEKLRKQLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHhc
Confidence 99999999999999999999999999874
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=8.2e-33 Score=266.03 Aligned_cols=296 Identities=28% Similarity=0.353 Sum_probs=234.9
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHc---CC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET---AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~---~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|++||+|.++++++|+++++..+..|+.. |. .+++||+||||+|||++|+++++.+ +..++++|+++.
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el------~~~~ielnasd~ 75 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY------GWEVIELNASDQ 75 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEEccccc
Confidence 5899999999999999999999999999874 33 3459999999999999999999997 457888999887
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH----HHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----DAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~----~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
...+.++..+.......... +.++++|||||+|.++. ...++|+++++.. ...+|+++|.+..+..
T Consensus 76 r~~~~i~~~i~~~~~~~sl~--------~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 76 RTADVIERVAGEAATSGSLF--------GARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSL 145 (482)
T ss_pred ccHHHHHHHHHHhhccCccc--------CCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccch
Confidence 66666666555443221111 12678999999999976 5688999999854 3458888998877776
Q ss_pred -hhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCC
Q 016800 201 -PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279 (382)
Q Consensus 201 -~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~ 279 (382)
++++||..+.|++++..++..+|..++..+|+.+++++++.|++.++||+|.+++.|+..+. ....|+.+++..+...
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~-~~~~it~~~v~~~~~~ 224 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE-GYGKLTLEDVKTLGRR 224 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCcHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999999999999999999998443 2467999999988877
Q ss_pred CCHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHh---hcCCC
Q 016800 280 IPPEVVEGLFAVCRS-GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCL---VDGAD 355 (382)
Q Consensus 280 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~g~~ 355 (382)
.....++++++.+.. ++...++..+.+ ...++..++..+.+.+... .-+++.+..+++.++.++.-+ ..+.+
T Consensus 225 d~~~~if~~l~~i~~~k~~~~a~~~~~~---~~~~~~~i~~~l~en~~~~-~~~~~~~~~a~~~ls~ad~~~~~~~~~~~ 300 (482)
T PRK04195 225 DREESIFDALDAVFKARNADQALEASYD---VDEDPDDLIEWIDENIPKE-YDDPEDIARAYDALSRADIFLGRVKRTQN 300 (482)
T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHc---ccCCHHHHHHHHHhccccc-cCCHHHHHHHHHHHhHHHHHHHHHHhcCC
Confidence 777788899998876 788888776554 4568888888887765441 124467778888887777664 34444
Q ss_pred hHHHHHHHHHHH
Q 016800 356 EYLQLLDVASNV 367 (382)
Q Consensus 356 ~~l~l~~l~~~l 367 (382)
.+|..+...+
T Consensus 301 --~~l~~~~~~~ 310 (482)
T PRK04195 301 --YDLWRYASDL 310 (482)
T ss_pred --cchHHHHHHH
Confidence 4555555554
No 53
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.8e-32 Score=249.22 Aligned_cols=291 Identities=18% Similarity=0.204 Sum_probs=214.2
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC------------------CCCCceEEeecC---C
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE------------------LYKSRVLELNAS---D 123 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~------------------~~~~~~~~~~~~---~ 123 (382)
+...++.+.+.+.+++.+| +||+||+|+||+++|.++++.++|.. ..+.++..+.+. .
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 5678889999999999999 89999999999999999999999853 123455555443 2
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhh
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 203 (382)
..+++++|+....+...+..+ ++||+|||++|.|+.+++|+|+|+|||||+++.||++|++++++++||+
T Consensus 87 ~I~idqiR~l~~~~~~~~~~g----------~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARLG----------GAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred cCCHHHHHHHHHHHhhccccC----------CceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 367899998777666544332 8899999999999999999999999999999999999999999999999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHH
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPE 283 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~ 283 (382)
|||+.+.|++++.+++..||.. ...++++.+..++..++|++..|+.+++.........+ .+.+...... .
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~~~r~~~-~~~l~~~~~~---~ 227 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALLQPERWQQREAL-CQALAYALPS---G 227 (334)
T ss_pred hccccccCCCCCHHHHHHHHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHH-HHHHHHHhcC---C
Confidence 9999999999999999999953 22367777888999999999999988764221100000 0111111111 1
Q ss_pred HHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCHHHHH-HHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhHhhc--CCC
Q 016800 284 VVEGLFAVCRSGDFDLANK----EVNNIIAEGYPASLLL-SQLFDVVVE-TEDISDEQQARICKCLAEVDKCLVD--GAD 355 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~----~l~~l~~~g~~~~~i~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~--g~~ 355 (382)
....+...+...+....+. ++++++........++ .+....+.. ...++...+..+++.+.++.+.+.. |+|
T Consensus 228 ~~~~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~~~~~~l~~~~N~N 307 (334)
T PRK07993 228 DWLSLLPALNHEQAPARLHWLATLLMDALKRQHGAAYVTNQDQPPLVAQLANHLSPARLQAILGDVCHCREQLLSVTGVN 307 (334)
T ss_pred CHHHHHHHHcccCHHHHHHHHHHHHHHHHHHhcCCcceeCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 1223344444444444444 4555543222111122 222222222 2368899999999999999999995 999
Q ss_pred hHHHHHHHHHHHHHHHccCC
Q 016800 356 EYLQLLDVASNVIRAVCNMP 375 (382)
Q Consensus 356 ~~l~l~~l~~~l~~~~~~~~ 375 (382)
++++++.|++++.++++.++
T Consensus 308 ~~L~le~lll~~~~~~~~~~ 327 (334)
T PRK07993 308 RELLLTDLLLRIEHYLQPGT 327 (334)
T ss_pred HHHHHHHHHHHHHHHHcccC
Confidence 99999999999999988774
No 54
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.9e-32 Score=253.48 Aligned_cols=298 Identities=20% Similarity=0.266 Sum_probs=212.5
Q ss_pred CCCcccCcHHHHHHHHHHHHcCC---------CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 016800 59 QVKDVAHQEEVVRVLTNTLETAN---------CPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~---------~~~-lll~Gp~G~GKt~la~~la~~l~~~~~----------------- 111 (382)
.|++++||+++++.|.+++..++ .+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 57899999999999999999987 788 999999999999999999999998641
Q ss_pred CCCceEEeecC-CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEE
Q 016800 112 YKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (382)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il 190 (382)
.+.++..+.+. ...+++++++.+......+.. ++++|+||||+|.|+..++|.|+++||+|++++.||+
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~----------~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPST----------GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCccc----------CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 12233333332 235678888766655433222 2789999999999999999999999999999999999
Q ss_pred eecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-------
Q 016800 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL------- 263 (382)
Q Consensus 191 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~------- 263 (382)
+|+++..++++|+|||+.+.|++|+.+++.++|.. +.+ ++++.+..++..++|+++.|+.++......
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~ 227 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLATDEEARARRAEVL 227 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999999999863 224 678889999999999999998775431100
Q ss_pred --cCCCCCh---------------hhHhhhhCCCCHHHHHHHHHHH--------------------------hc------
Q 016800 264 --FGSSITS---------------KDLISVSGVIPPEVVEGLFAVC--------------------------RS------ 294 (382)
Q Consensus 264 --~~~~It~---------------~~v~~~~~~~~~~~~~~~~~~~--------------------------~~------ 294 (382)
...--.. +.+....+.........+.+.+ ..
T Consensus 228 ~~l~~l~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T PRK07940 228 NLALRLARVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRA 307 (394)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhh
Confidence 0000010 1111122222222222222221 00
Q ss_pred --CCHHH----HHHHHHHHHH--cCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHH
Q 016800 295 --GDFDL----ANKEVNNIIA--EGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVAS 365 (382)
Q Consensus 295 --~~~~~----~~~~l~~l~~--~g~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~ 365 (382)
..... ...|+++++. .|.+...+.......+.. ...++...+..+++.+.++...+..|+|+++++|.|++
T Consensus 308 ~~~~l~~~l~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll 387 (394)
T PRK07940 308 SRDALDRALVDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAARSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVA 387 (394)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11222 4556777753 332221221221111111 23688999999999999999999999999999999999
Q ss_pred HHHHHH
Q 016800 366 NVIRAV 371 (382)
Q Consensus 366 ~l~~~~ 371 (382)
++.+.+
T Consensus 388 ~l~~~~ 393 (394)
T PRK07940 388 ALRQAL 393 (394)
T ss_pred HHHHhc
Confidence 998775
No 55
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.5e-31 Score=244.47 Aligned_cols=292 Identities=21% Similarity=0.243 Sum_probs=206.2
Q ss_pred CCCcccC-cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceEE
Q 016800 59 QVKDVAH-QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLE 118 (382)
Q Consensus 59 ~~~~~~g-~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------------~~~~~~ 118 (382)
.|+.++| |+.+++.|.+.+..++.+| +||+||+|+||+++|+.+++.++|++.. +.++..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 5678888 9999999999999999999 7999999999999999999999986521 123333
Q ss_pred eecC-CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 119 LNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 119 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+.+. ...+++++++.+..+...+.. +++||+||||+|.|+.+++|+|+++||+||+++.||++++++.+
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~----------~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVE----------SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcc----------cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 3322 234678888877766544322 27899999999999999999999999999999999999999999
Q ss_pred cchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhh
Q 016800 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277 (382)
Q Consensus 198 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~ 277 (382)
++++|+|||+.++|.+++.+++..++. ++| ++++.+..++..+ |+++.|+.+++..........-...+. .+
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~~-g~~~~A~~l~~~~~~~~~~~~~~~~~~-~~ 224 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGLT-NSVEEALALSEDDWFAQARALVIKLYE-AL 224 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHHc-CCHHHHHHHhcCchHHHHHHHHHHHHH-HH
Confidence 999999999999999999999988884 345 5666666676664 789999887764332100000001111 11
Q ss_pred CCCCHHHHHHHHHHHhc----CC-HH----HHHHHHHHHHH--cCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q 016800 278 GVIPPEVVEGLFAVCRS----GD-FD----LANKEVNNIIA--EGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAE 345 (382)
Q Consensus 278 ~~~~~~~~~~~~~~~~~----~~-~~----~~~~~l~~l~~--~g~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 345 (382)
.......+..+.+.+.. ++ .. -...++++++. .|.....+.......+.. +..++...+..+++.+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~l~~~~~~~~~ 304 (329)
T PRK08058 225 HEKDLQSFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQIVAALELILE 304 (329)
T ss_pred HcCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11111122222222221 11 11 23345566543 332222222222222222 236899999999999999
Q ss_pred HhhHhhcCCChHHHHHHHHHHHH
Q 016800 346 VDKCLVDGADEYLQLLDVASNVI 368 (382)
Q Consensus 346 ~~~~l~~g~~~~l~l~~l~~~l~ 368 (382)
+...+..|+|+++++|.+++++.
T Consensus 305 ~~~~l~~n~n~~L~le~lll~~~ 327 (329)
T PRK08058 305 AKRRLNSNVNFQLVMEQLVLRLQ 327 (329)
T ss_pred HHHHHHHcCCHHHHHHHHHHhcc
Confidence 99999999999999999999875
No 56
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.2e-30 Score=236.69 Aligned_cols=285 Identities=17% Similarity=0.157 Sum_probs=205.3
Q ss_pred HHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceEEeecC---CCcchHH
Q 016800 72 VLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS---DDRGINV 129 (382)
Q Consensus 72 ~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------------~~~~~~~~~~~---~~~~~~~ 129 (382)
.+.+++..++.+| +||+||+|+||+++|..+++.++|... .+.++..+.+. ...++++
T Consensus 11 ~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~ 90 (328)
T PRK05707 11 LWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ 90 (328)
T ss_pred HHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH
Confidence 3444566799999 999999999999999999999998631 12355555443 3467899
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceE
Q 016800 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209 (382)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i 209 (382)
+|+.+..+...+..+ ++||+|||++|.|+.+++|+|++++|+|++++.||++|+.+..+++||+|||+.+
T Consensus 91 iR~l~~~~~~~~~~~----------~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 91 VRELVSFVVQTAQLG----------GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred HHHHHHHHhhccccC----------CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceee
Confidence 998776655443322 7899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHH
Q 016800 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289 (382)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~ 289 (382)
.|.+++.+++..||.... ...+++.+..++..++|++..|+.+++.........+ .+.+..+.... .....+.
T Consensus 161 ~~~~~~~~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~~~-~~~l~~~~~~~--~~~~~~~ 233 (328)
T PRK05707 161 ACPLPSNEESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLHEQGVREQRARV-LDGVKKLLKQQ--QSASQLA 233 (328)
T ss_pred eCCCcCHHHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHCcchHHHHHHH-HHHHHHHhcCc--ccHHHHH
Confidence 999999999999996532 1246667778899999999999887653221100000 11222222211 1234555
Q ss_pred HHHhcCCHHHHHH----HHHHHHH--cCCCHHHHH-HHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhHhh--cCCChHHH
Q 016800 290 AVCRSGDFDLANK----EVNNIIA--EGYPASLLL-SQLFDVVVE-TEDISDEQQARICKCLAEVDKCLV--DGADEYLQ 359 (382)
Q Consensus 290 ~~~~~~~~~~~~~----~l~~l~~--~g~~~~~i~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~~l~ 359 (382)
+.+.+.+....+. ++++++. .|.+...++ ......+.. ...++...+..+++.+.++...+. .|+|.++.
T Consensus 234 ~~~~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l~~~~NvN~~L~ 313 (328)
T PRK05707 234 ESWLKVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKVLGKANLNRQLL 313 (328)
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccCCCCHHHH
Confidence 5555556555554 4455543 332221121 222222221 236899999999999999999985 79999999
Q ss_pred HHHHHHHHHHHHcc
Q 016800 360 LLDVASNVIRAVCN 373 (382)
Q Consensus 360 l~~l~~~l~~~~~~ 373 (382)
+|.+++++...++.
T Consensus 314 le~lll~~~~~~~~ 327 (328)
T PRK05707 314 LEALLVQWAGLPGA 327 (328)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988764
No 57
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.98 E-value=5.4e-30 Score=230.30 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=205.9
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceEEeec--CCC
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNA--SDD 124 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------------~~~~~~~~~~--~~~ 124 (382)
+...++.+.+.+..++.+| +||+||+|+||+++|..+++.++|... .+.++..+.+ ...
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 5677889999999999999 899999999999999999999998541 2234555544 234
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhc
Q 016800 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 204 (382)
.+++++|+....+...+..+ ++||+|||++|.|+..++|+|+|+||+||+++.||++|+.+.++++||+|
T Consensus 87 I~id~iR~l~~~~~~~~~~g----------~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQG----------GNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred CCHHHHHHHHHHHhhccccC----------CceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 67899998766655443332 88999999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHH
Q 016800 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284 (382)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~ 284 (382)
||+.+.|.+++.+++.+||.... ..++..+..++..++|++..|+..++........ +.+..+........
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r~----~~~~~l~~~~~~~~ 227 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLLEQRK----TFLRQFWLFYRRRS 227 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChHHHHH----HHHHHHHHHhccCC
Confidence 99999999999999999997543 1344456777889999999998877543221100 11111110000112
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHH--cCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhHhh--cCCC
Q 016800 285 VEGLFAVCRSGDFDL----ANKEVNNIIA--EGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAEVDKCLV--DGAD 355 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~----~~~~l~~l~~--~g~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--~g~~ 355 (382)
..++...+.+.+... ...++++++. .|.+...+..+....+.. +..++...+.++++.+.++..++. .|.|
T Consensus 228 ~~~~~~~~~k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~~~r~~L~~~~~iN 307 (325)
T PRK06871 228 PLELLPLFDKELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDLLQINAVN 307 (325)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccccC
Confidence 233433333333333 3445666654 332222222232222222 236899999999999999999995 4579
Q ss_pred hHHHHHHHHHHHHHHH
Q 016800 356 EYLQLLDVASNVIRAV 371 (382)
Q Consensus 356 ~~l~l~~l~~~l~~~~ 371 (382)
..|.++..++.+.-.+
T Consensus 308 ~~L~l~~~l~~~~~~~ 323 (325)
T PRK06871 308 QELILLDGLTRLVTEV 323 (325)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999876443
No 58
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.98 E-value=2.3e-29 Score=230.09 Aligned_cols=295 Identities=19% Similarity=0.278 Sum_probs=210.3
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC-------C--------------
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE-------L-------------- 111 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~-------~-------------- 111 (382)
.+.|..+++++||+++.+.|...+..++.+| +||+||+|+|||++|+.+++.++|.. .
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 3689999999999999999999999999999 99999999999999999999999821 0
Q ss_pred ---CCCceEEeecC---------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHH
Q 016800 112 ---YKSRVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179 (382)
Q Consensus 112 ---~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~l 179 (382)
.+.++..+..+ ...+++.++.....+..... . ++++|+||||+|.|+..++|+|++++
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~-~---------g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSG-D---------GNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccc-c---------CCceEEEEEchhhcCHHHHHHHHHHH
Confidence 01123333211 12346777765554443322 2 27899999999999999999999999
Q ss_pred HhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016800 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (382)
Q Consensus 180 e~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~ 259 (382)
|+|+.++.||++++.+.+++++|+|||+.++|+|++.+++..+|...+...+ ++++++..+++.++|++|.|+++++.
T Consensus 166 EEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 166 EEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred hcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999987554333 67899999999999999999999875
Q ss_pred HHHhcCCCCChhhHhhhhC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHH---
Q 016800 260 AARLFGSSITSKDLISVSG--VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDE--- 334 (382)
Q Consensus 260 ~~~~~~~~It~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~--- 334 (382)
.... +. +.+...+. .........+.+.+...+....+.|+.+++. +.+....+.... .. +..
T Consensus 244 ~~~~----~~-~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~l~------d~l~~~~~~~~~-~g-~~~~~~ 310 (351)
T PRK09112 244 GGLE----II-ATIDQLLAGSGPDARKAHKLADALSGRESEVQFDFFRDHLL------DRIMAEARRAAE-AG-DLALAE 310 (351)
T ss_pred CcHH----HH-HHHHHHHhhccCCcchHHHHHHHHhCCChHHHHHHHHHHHH------HHHHHHHHhhcc-cC-chhhHH
Confidence 4321 11 11222222 1122234677777777776666676666543 122222221000 00 111
Q ss_pred HHHHHHH-HHHHHhhHhhcCCChHHHHHHHHHHHHHHHcc
Q 016800 335 QQARICK-CLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373 (382)
Q Consensus 335 ~~~~~~~-~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~ 373 (382)
...++.+ ....+...-..|.+++-.+..++.++.+.++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~nld~~~~~~~~~~~~~~~~~~ 350 (351)
T PRK09112 311 RLARLWSEIIEEIVEAEAYNLDRKQTVISLLEKLHRAFRT 350 (351)
T ss_pred HHHHHHHHHHHHHhhhhhhCcCHHHHHHHHHHHHHHHHhc
Confidence 2223333 22223333446889999999999999887764
No 59
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.98 E-value=1.5e-29 Score=232.57 Aligned_cols=297 Identities=21% Similarity=0.316 Sum_probs=207.2
Q ss_pred cCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC---------------------
Q 016800 55 YRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY--------------------- 112 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~--------------------- 112 (382)
.+|.++++++||+++++.|.+.+..++++| +||+||+|+||+++|.++++.++|....
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 689999999999999999999999999999 9999999999999999999999985421
Q ss_pred -------CCceEEeecC---------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHH
Q 016800 113 -------KSRVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR 176 (382)
Q Consensus 113 -------~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll 176 (382)
+.++..+.+. ....++++++....+..... . ++++|+||||+|.|+..++|+|+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~-~---------~~~kVviIDead~m~~~aanaLL 162 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAA-E---------GGWRVVIVDTADEMNANAANALL 162 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcc-c---------CCCEEEEEechHhcCHHHHHHHH
Confidence 1133334321 22456778876655433222 1 27899999999999999999999
Q ss_pred HHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 016800 177 RTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (382)
Q Consensus 177 ~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~ 256 (382)
+++|+|+..+.||++|+.+..+.++++|||+.+.|.+++.+++.++|... +...+++.+..++..++|+++.++.+
T Consensus 163 K~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 163 KVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999653 33345566678899999999999998
Q ss_pred HHHHHHhcCCCCChhhHhhhhC---CCCHHHHHHHHHHHhcCC----HHHHHHH----HHHHHHcCC---CHHHHHHHHH
Q 016800 257 LQGAARLFGSSITSKDLISVSG---VIPPEVVEGLFAVCRSGD----FDLANKE----VNNIIAEGY---PASLLLSQLF 322 (382)
Q Consensus 257 l~~~~~~~~~~It~~~v~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~----l~~l~~~g~---~~~~i~~~l~ 322 (382)
++..... + .+.+...+. ......+..+.+.+...+ +...+.| +.+++..+. ++...+..-.
T Consensus 239 l~~~~~~----~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~~~ 313 (365)
T PRK07471 239 AGGDGLA----L-YRRLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPGEA 313 (365)
T ss_pred hcccchH----H-HHHHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccchhh
Confidence 8643211 1 111212221 122323456666666655 4444444 444443211 1111110000
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHhhHhh-cCCChHHHHHHHHHHHHHH
Q 016800 323 DVVVE-TEDISDEQQARICKCLAEVDKCLV-DGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~l~l~~l~~~l~~~ 370 (382)
..+.. ........+.++.+.+.+....-. .|.|+++.++.+++.+...
T Consensus 314 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~~ 363 (365)
T PRK07471 314 ALLARLAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA 363 (365)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHh
Confidence 11111 112344555666666655554444 6899999999999998754
No 60
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=2.3e-29 Score=226.01 Aligned_cols=279 Identities=17% Similarity=0.189 Sum_probs=203.8
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------CCCceEEe--ecCC----
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL---------------YKSRVLEL--NASD---- 123 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~---------------~~~~~~~~--~~~~---- 123 (382)
+...++.+...+..++.|| +||+||+|+||+++|.++++.++|... .+.++..+ .+.+
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 6788899999999999999 999999999999999999999998641 12344444 2221
Q ss_pred ---CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 124 ---DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 124 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
..+++++++....+...+.. +++||+|||++|.|+..++|+|+|+||+|++++.||++++.++++++
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~----------g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQY----------GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred ccccccHHHHHHHHHHHhhCccc----------CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 23577888766655433322 27899999999999999999999999999999999999999999999
Q ss_pred hhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCC
Q 016800 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280 (382)
Q Consensus 201 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~ 280 (382)
||+|||+.+.|.+++.+++..||.. .+ ++++.+..++..++|++..|+..++.........+ ...+..+...
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~~~~~~~r~~~-~~~l~~~~~~- 230 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLREDGLALRRAV-AQDLEQIASG- 230 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHH-HHHHHHhccC-
Confidence 9999999999999999999999953 34 56666778899999999999887754321110001 1112111111
Q ss_pred CHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHhhcCCCh
Q 016800 281 PPEVVEGLFAVCRSGD-FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDI---SDEQQARICKCLAEVDKCLVDGADE 356 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~~ 356 (382)
......+.+.+.+.+ ......|+.+++...... ..+ ....+..+...+.+....+..|+|+
T Consensus 231 -~~~~~~~a~~~~~~~~~~~l~~~~~Dll~~~~~~--------------~~~~~~~~~~L~~~~~~l~~~~~~~~~~lN~ 295 (319)
T PRK08769 231 -RAGAVDVAQRWTNDGQADQRLRHAADLALAQASA--------------GLTDPSRLHKLATWFDAANRTRDLLRTTVRA 295 (319)
T ss_pred -cccHHHHHHHHccCCcHHHHHHHHHHHHHHhcCC--------------cccChhhHHHHHHHHHHHHHHHHhccCCCCH
Confidence 112345555555432 344555666665421110 012 3456777778888888888999999
Q ss_pred HHHHHHHHHHHHHHHccCCCc
Q 016800 357 YLQLLDVASNVIRAVCNMPEE 377 (382)
Q Consensus 357 ~l~l~~l~~~l~~~~~~~~~~ 377 (382)
+|.+|.|++++..++......
T Consensus 296 ~L~le~lll~~~~~~~~~~~~ 316 (319)
T PRK08769 296 DLAVTELLLAWREGERQPRSR 316 (319)
T ss_pred HHHHHHHHHHHHHHhcccccc
Confidence 999999999999998776443
No 61
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=7e-29 Score=224.68 Aligned_cols=280 Identities=15% Similarity=0.149 Sum_probs=198.0
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------------CCCceEEeecC---
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------------YKSRVLELNAS--- 122 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------------~~~~~~~~~~~--- 122 (382)
+...++.+... .++.|| +||+||+|+||+++|..+++.++|... .+.++..+.+.
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~ 83 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALA 83 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 44566666664 568889 999999999999999999999998641 11234434221
Q ss_pred --------------------------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHH
Q 016800 123 --------------------------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR 176 (382)
Q Consensus 123 --------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll 176 (382)
...+++++++....+...+.. +++||+|||++|+|+.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~----------~~~kV~iI~~ae~m~~~AaNaLL 153 (342)
T PRK06964 84 AEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHR----------GGARVVVLYPAEALNVAAANALL 153 (342)
T ss_pred ccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCcc----------CCceEEEEechhhcCHHHHHHHH
Confidence 134678888766544433222 28899999999999999999999
Q ss_pred HHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 016800 177 RTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (382)
Q Consensus 177 ~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~ 256 (382)
++||+|++++.||++|+.++.+++||+|||+.+.|++++.+++.+||.. .+ +++. ..++..++|++..|+.+
T Consensus 154 KtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~----~~--~~~~--~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 154 KTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAA----QG--VADA--DALLAEAGGAPLAALAL 225 (342)
T ss_pred HHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHH----cC--CChH--HHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999954 24 3332 33577889999999887
Q ss_pred HHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHH----HHHHHHH--cCCCHHHHHHHHHHHHHh-cC
Q 016800 257 LQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANK----EVNNIIA--EGYPASLLLSQLFDVVVE-TE 329 (382)
Q Consensus 257 l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~l~~--~g~~~~~i~~~l~~~~~~-~~ 329 (382)
++..... . .+.+...+.......+..+.+.+.+.+....+. ++++++. .|.+. .+.......+.. ..
T Consensus 226 ~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~l~~l~~~lrD~l~~~~~~~~-~~~~d~~~~l~~~a~ 299 (342)
T PRK06964 226 ASDENRP----L-RDWTLGQLAAGAACDAFACAETLQKLPVPAVLGWLQRWLYDLLAQRLAGAP-RYFPAQRAALARCAA 299 (342)
T ss_pred HCCChHH----H-HHHHHHHHhccCchhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCc-eecHhHHHHHHHHHH
Confidence 7432110 0 111111222222234455556665555555444 4566543 33222 111111111211 23
Q ss_pred CCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
.++...+..+++.+.++...+..|+|+++++|.+++++.+.+
T Consensus 300 ~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~~~ 341 (342)
T PRK06964 300 AVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYRELF 341 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999997664
No 62
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=1.2e-28 Score=216.49 Aligned_cols=259 Identities=16% Similarity=0.173 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC----------CCCCceEEeecCC---CcchHHHHH
Q 016800 67 EEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE----------LYKSRVLELNASD---DRGINVVRT 132 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~----------~~~~~~~~~~~~~---~~~~~~~~~ 132 (382)
...++.|.+.+..++.+| +||+||+|+||+++|.++++.++|.. ..+.++..+.+.. ..+++++++
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~ 82 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRA 82 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHH
Confidence 356788999999999999 99999999999999999999999963 2345565554432 257888888
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEec
Q 016800 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212 (382)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 212 (382)
..+.+...+..+ ++||+|||++|.|+.+++|+|+++||+||+++.||++|++++.+++||+|||+.+.|+
T Consensus 83 l~~~~~~~p~e~----------~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~ 152 (290)
T PRK05917 83 IKKQIWIHPYES----------PYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIP 152 (290)
T ss_pred HHHHHhhCccCC----------CceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEcc
Confidence 776655443322 8899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHH--HHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHH
Q 016800 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLR--RAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290 (382)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr--~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~ 290 (382)
++. ...++++.+..++..++|+++ .+...+... .+...... .+.+..+
T Consensus 153 ~~~---------------~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~~---------~~~~~~~~----re~~~~~-- 202 (290)
T PRK05917 153 MEE---------------KTLVSKEDIAYLIGYAQGKESVTEVGQIVKGS---------ADTDKQVL----RDKTKAM-- 202 (290)
T ss_pred chh---------------ccCCCHHHHHHHHHHhCCChhHHHHHHHHhcc---------hHHHHHHH----HHHHHHH--
Confidence 861 123688889999999999996 222222210 01100000 1112222
Q ss_pred HHhcCCHHHHHHHHHHHHH--cCCCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHH
Q 016800 291 VCRSGDFDLANKEVNNIIA--EGYPAS-LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367 (382)
Q Consensus 291 ~~~~~~~~~~~~~l~~l~~--~g~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l 367 (382)
.+-.+.++++++. .|.+.. .+..+....+.. ++...+..+++.+.++.+.+.+|+|++++++.|++++
T Consensus 203 ------L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~~---~~~~~l~~~i~~i~~a~~~l~~N~N~~l~le~l~l~l 273 (290)
T PRK05917 203 ------LEVLLQLFRDRFLLALKVPASALAYPDLLKEILT---LPVLPLEKVLSIIERAVQALDNSSSAPSCLEWVALQL 273 (290)
T ss_pred ------HHHHHHHHHHHHHHHcCCchhhhccHHHHHHHHh---cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2334567777653 444443 233444444433 2222377999999999999999999999999999999
Q ss_pred HHHHccC
Q 016800 368 IRAVCNM 374 (382)
Q Consensus 368 ~~~~~~~ 374 (382)
.++++.+
T Consensus 274 ~~~~~~~ 280 (290)
T PRK05917 274 WSLKNRQ 280 (290)
T ss_pred HHHHHHH
Confidence 9998765
No 63
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=2e-29 Score=210.10 Aligned_cols=196 Identities=24% Similarity=0.311 Sum_probs=143.1
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
....++.+++||.+|+|++||++++..+.-+++. ...+|++||||||+||||+|+.+++++ +..+..++
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~------~~~~~~~s 82 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL------GVNFKITS 82 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC------T--EEEEE
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc------CCCeEecc
Confidence 3457899999999999999999999887766542 457889999999999999999999998 35566667
Q ss_pred cCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------------
Q 016800 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------------- 183 (382)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------------- 183 (382)
++......++...+..+. +..|++|||+|++++..++.|+..||+..
T Consensus 83 g~~i~k~~dl~~il~~l~----------------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 83 GPAIEKAGDLAAILTNLK----------------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp CCC--SCHHHHHHHHT------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred chhhhhHHHHHHHHHhcC----------------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 654434444444433221 55699999999999999999999999653
Q ss_pred -CceEEEEeecCccccchhhhcccceE-EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 184 -KVTRFFFICNYISRIIEPLASRCAKF-RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 184 -~~~~~Il~~~~~~~l~~~l~sr~~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
+...+|-+|+....+..++++|+..+ ++..++.+++..++.+.+...++.++++++.+|+..|.|.+|-|.++|....
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 22346667788888999999999964 8999999999999999999999999999999999999999999999998765
Q ss_pred Hh
Q 016800 262 RL 263 (382)
Q Consensus 262 ~~ 263 (382)
.+
T Consensus 227 D~ 228 (233)
T PF05496_consen 227 DF 228 (233)
T ss_dssp CC
T ss_pred HH
Confidence 44
No 64
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=7.2e-28 Score=216.06 Aligned_cols=281 Identities=12% Similarity=0.146 Sum_probs=199.4
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------CCCceEEeecC---CC
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-----------------YKSRVLELNAS---DD 124 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-----------------~~~~~~~~~~~---~~ 124 (382)
+....+.+.+.+..++.+| +||+||.|+||+++|..+++.++|.+. .+.++..+.+. ..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 5678889999999999999 999999999999999999999998642 22355555543 23
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhc
Q 016800 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 204 (382)
.+++++|+........+.. +++||+|||++|.|+..++|+|+|++||||+++.||++|++++++++||+|
T Consensus 88 I~vdqiR~l~~~~~~~~~~----------~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 88 ITVEQIRQCNRLAQESSQL----------NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CCHHHHHHHHHHHhhCccc----------CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 5788888765443333222 288999999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHH
Q 016800 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284 (382)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~ 284 (382)
||+.+.|++++.+++.+||.. .|+. ....++..++|++..|+..++.......... .+.+...+.... ..
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~~~~~~~~~~~-~~~l~~~l~~~~-~~ 227 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMKEGGLEKYHKL-ERQLVDALSGPV-SD 227 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhCCCcHHHHHHH-HHHHHHHHhcCc-cc
Confidence 999999999999999999953 3433 2356788999999999888753221100000 112222222221 23
Q ss_pred HHHHHHHHhcCCHHHHHH----HHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhh--cCCCh
Q 016800 285 VEGLFAVCRSGDFDLANK----EVNNIIA--EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLV--DGADE 356 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~----~l~~l~~--~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~ 356 (382)
+..+.+.+...+ ...+. ++.+++. .|....+....+ ..+. .++...+...+..+.++...+. .+.|.
T Consensus 228 ~~~~a~~~~~~~-~~~l~~L~~ll~Dll~~~~g~~~~~~~~~~-~~l~---~~~~~~l~~~~~~l~~~~~~L~~~~~ln~ 302 (319)
T PRK06090 228 QLKCASLIAADP-LTHLSWLWLLLTDAQKVHFGVQNEYYLPGS-AALG---PFTYSGLYVSTAKLERLKEQLQQFSGLNT 302 (319)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHhCCcchhhhHHH-HHHH---hhCHHHHHHHHHHHHHHHHHHHhccccCH
Confidence 344444444333 22333 4455543 332222222222 2221 3577778888999999999987 45799
Q ss_pred HHHHHHHHHHHHHHH
Q 016800 357 YLQLLDVASNVIRAV 371 (382)
Q Consensus 357 ~l~l~~l~~~l~~~~ 371 (382)
.+.++.+++.+.+.+
T Consensus 303 elll~~lll~~~~~~ 317 (319)
T PRK06090 303 ELLIMNWLIESREEL 317 (319)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988765
No 65
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.1e-26 Score=205.32 Aligned_cols=279 Identities=14% Similarity=0.142 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------CCCceEEeec-CCCcchHHHHHHHHHHH
Q 016800 68 EVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------YKSRVLELNA-SDDRGINVVRTKIKTFA 138 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 138 (382)
.+++.|.+.++.++.+| +||+|++|+||+.++..+++.++|... .+.++..++. ....+++++++.+..+.
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 46788999999999999 899999999999999999999988431 1123444542 23356788888777765
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHH
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~ 218 (382)
..+.. .+++||+|||+++.|+..++|+|+++||+||+++.||++++.+.+++++|+|||+.++|.+++.++
T Consensus 83 ~~~~~---------~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 83 FSSFV---------QSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred cCCcc---------cCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 44322 238899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCC--CHHHHHHHHHHHhcC-
Q 016800 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI--PPEVVEGLFAVCRSG- 295 (382)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~--~~~~~~~~~~~~~~~- 295 (382)
+..+|... + ++++.+..++..++| +++|+.++...... ....+.+.+... ....+..+.+....+
T Consensus 154 l~~~l~~~----~--~~~~~a~~~a~~~~~-~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~l~~~~~~~~~ke 221 (299)
T PRK07132 154 ILAKLLSK----N--KEKEYNWFYAYIFSN-FEQAEKYINKESEN-----LLKKFEEALNKSLKEKYELILFLNKKLTKE 221 (299)
T ss_pred HHHHHHHc----C--CChhHHHHHHHHcCC-HHHHHHHHhcCCHH-----HHHHHHHHHHHhhhhHHHHHHHHHhhcChh
Confidence 99998532 3 677778888888775 99998886532210 001121111111 111222233322221
Q ss_pred C----HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHH
Q 016800 296 D----FDLANKEVNNIIA--EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 296 ~----~~~~~~~l~~l~~--~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
+ .+-..-|+++++. .+.+...++.. ...+.... ++... +++.+.++..++.+|+|..++++.|++++.+
T Consensus 222 ~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~-~~~i~~~~-~s~~~---li~~i~~~~~~L~~N~N~~l~~e~lll~l~e 296 (299)
T PRK07132 222 NALFLLKLLKFFFKSIFANKKKKNPKNIKVA-FSKKKKFK-IEFFE---LITIIDEFLNSLETNENFNLQKQAFLVKIYE 296 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCChHhHhhH-HHHHHHHh-cCHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 1222335566654 34454434433 34444422 55544 3888999999999999999999999999998
Q ss_pred HHc
Q 016800 370 AVC 372 (382)
Q Consensus 370 ~~~ 372 (382)
+|.
T Consensus 297 ~~~ 299 (299)
T PRK07132 297 IYE 299 (299)
T ss_pred hhC
Confidence 863
No 66
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=6.3e-26 Score=200.29 Aligned_cols=262 Identities=17% Similarity=0.193 Sum_probs=186.9
Q ss_pred CcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceEEeecCC-C
Q 016800 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNASD-D 124 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------------~~~~~~~~~~~~-~ 124 (382)
.|+.+++.|.+.+..++.+| +||+|| +||+++|..+++.++|.+. .+.++..+.+.. .
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 57889999999999999999 999996 6899999999999998642 123455554432 3
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhc
Q 016800 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 204 (382)
..++++|+....+...+..+ +++|+|||++|+|+..++|+|++++|+|++++.||++|++++.+++||+|
T Consensus 84 I~idqIR~l~~~~~~~p~~~----------~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGYEG----------KQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKS 153 (290)
T ss_pred CCHHHHHHHHHHHhhCcccC----------CcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHH
Confidence 56889998777766544332 78999999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHH
Q 016800 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284 (382)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~ 284 (382)
||+.+.|++ +.+++.+++. .+| ++.+....++..+ |++..|+.+++..... + + ...
T Consensus 154 Rcq~i~f~~-~~~~~~~~L~----~~g--~~~~~a~~la~~~-~s~~~A~~l~~~~~~~-------~-~--------~~~ 209 (290)
T PRK07276 154 RTQIFHFPK-NEAYLIQLLE----QKG--LLKTQAELLAKLA-QSTSEAEKLAQNKKFL-------E-L--------IDQ 209 (290)
T ss_pred cceeeeCCC-cHHHHHHHHH----HcC--CChHHHHHHHHHC-CCHHHHHHHhCChhHH-------H-H--------HHH
Confidence 999999976 7777777774 455 4555555566555 5799998887432211 0 0 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHH
Q 016800 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYP---ASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLL 361 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~---~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~ 361 (382)
+..+.+.+...+...++.. ..+.....+ ...++..+..++.. .+......+.+....+++..+.+|+|..+++|
T Consensus 210 ~~~~~~~l~~~~~~~~l~~-~~l~~~~~~~e~q~~~l~~l~~~~~~--~~~~~~~~~~L~~~~~~r~~w~~Nv~~~~~le 286 (290)
T PRK07276 210 AERFVTILLKDKDEAYLQV-ARLVQLADEKEEQDQVLTLLTLLLAQ--ERMQVNVRTQLEAVYQARKMWQSNVSFQNALE 286 (290)
T ss_pred HHHHHHHhccChHHHHHHH-HHHHHhhhcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHhccCHHHHHH
Confidence 2233333333332332222 233322212 22233333222222 34556678889999999999999999999999
Q ss_pred HHHH
Q 016800 362 DVAS 365 (382)
Q Consensus 362 ~l~~ 365 (382)
.|++
T Consensus 287 ~l~l 290 (290)
T PRK07276 287 YMVL 290 (290)
T ss_pred HHhC
Confidence 9874
No 67
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.9e-26 Score=212.97 Aligned_cols=291 Identities=33% Similarity=0.476 Sum_probs=208.1
Q ss_pred CcccCcHHHHHHHHHHHH-cCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceEEee
Q 016800 61 KDVAHQEEVVRVLTNTLE-TANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELN 120 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~-~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------------~~~~~~~~~ 120 (382)
+++++++.....+..+.. .+++|| +||+||||+|||++|.++++.++|... ...++++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 367888888888888887 678999 999999999999999999999998653 346899999
Q ss_pred cCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
+++....+...+.++.+.......+ . .++++||||||+|.|+.+++|+|++++|+|+.++.||++||.+.++.+
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~-----~-~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~ 154 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESP-----L-EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILP 154 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCC-----C-CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccc
Confidence 9987764433344444433322111 0 137899999999999999999999999999999999999999999999
Q ss_pred hhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCC
Q 016800 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280 (382)
Q Consensus 201 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~ 280 (382)
+|+|||+.+.|.|++......+.. ++.+..++..+.||+|.+++.++..+.. ......+.......
T Consensus 155 tI~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~---~~~~~~~~~~~~~~ 220 (325)
T COG0470 155 TIRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL---EIGEESIYEALLLA 220 (325)
T ss_pred hhhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh---cccHHHHHHHHHhh
Confidence 999999999999955544444432 5678889999999999999999988764 33333343333322
Q ss_pred CHH-----HHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHhhc
Q 016800 281 PPE-----VVEGLFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE--DISDEQQARICKCLAEVDKCLVD 352 (382)
Q Consensus 281 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~-l~~~g~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 352 (382)
... ....++..... +...+...... +...+.........+........ ..........+..+..+...+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (325)
T COG0470 221 LPESLAQLAALELLKLAEN-KFLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLD 299 (325)
T ss_pred ChhhcccccHHHHHHHHHh-cchhHHHHHHHHHHHcCcchhHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 222 33344433332 33344444333 23445555554444443333211 13444556778888999999999
Q ss_pred CCChHHHHHHHHHHHHHHHc
Q 016800 353 GADEYLQLLDVASNVIRAVC 372 (382)
Q Consensus 353 g~~~~l~l~~l~~~l~~~~~ 372 (382)
+....+++..++..+.....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (325)
T COG0470 300 GLLALIQLENLLAELLLLQL 319 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888776543
No 68
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=5.5e-25 Score=199.47 Aligned_cols=279 Identities=16% Similarity=0.161 Sum_probs=191.4
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------------CCCceEEeecCC--
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------------YKSRVLELNASD-- 123 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------------~~~~~~~~~~~~-- 123 (382)
+...++.+... .++.+| +||+||+|+|||++|..+++.++|... .+.++.++.+..
T Consensus 6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~ 83 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE 83 (325)
T ss_pred cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc
Confidence 44555666544 568899 999999999999999999999998542 124566676531
Q ss_pred --------CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 124 --------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 124 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
..+++++|+........+.. ++++|+|||+++.|+..+++.|++++|+++..+.||++|+++
T Consensus 84 ~~~g~~~~~I~id~iR~l~~~~~~~p~~----------~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~ 153 (325)
T PRK08699 84 PENGRKLLQIKIDAVREIIDNVYLTSVR----------GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAA 153 (325)
T ss_pred ccccccCCCcCHHHHHHHHHHHhhCccc----------CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCCh
Confidence 24688899866554433222 278999999999999999999999999998888999999999
Q ss_pred cccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhh
Q 016800 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275 (382)
Q Consensus 196 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~ 275 (382)
..+.++++|||+.+.|++++.+++..||.. .++ +.... . ...++|.+..+... +.... .+.+..
T Consensus 154 ~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~----~~~--~~~~~-~-l~~~~g~p~~~~~~-~~~~~-------r~~~~~ 217 (325)
T PRK08699 154 DKVLPTIKSRCRKMVLPAPSHEEALAYLRE----RGV--AEPEE-R-LAFHSGAPLFDEEP-ELRAL-------RIKLLD 217 (325)
T ss_pred HhChHHHHHHhhhhcCCCCCHHHHHHHHHh----cCC--CcHHH-H-HHHhCCChhhhcCc-hHHHH-------HHHHHH
Confidence 999999999999999999999999999953 344 22221 2 24567777443210 00000 011111
Q ss_pred hhCCCCHHHHHHHHHHHhcC--CHHHH----HHHHHHHHH--cCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q 016800 276 VSGVIPPEVVEGLFAVCRSG--DFDLA----NKEVNNIIA--EGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAEV 346 (382)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~l~~l~~--~g~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 346 (382)
.+.......+..+.+.+... +.... ..++++++. .|... .+.......+.. ...++...+..+++.+.++
T Consensus 218 ~l~~~~~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~~-~~~~d~~~~l~~~a~~~~~~~L~~~~~~l~~~ 296 (325)
T PRK08699 218 ILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKP-VYYPAYEDRLLQTASGFRPRNVFAAEDMLKQL 296 (325)
T ss_pred HHHccChhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCCc-ccCHhHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12222233444555555542 23433 445566654 22221 111111111111 2368999999999999999
Q ss_pred hhHhhcCCChHHHHHHHHHHHHHHHcc
Q 016800 347 DKCLVDGADEYLQLLDVASNVIRAVCN 373 (382)
Q Consensus 347 ~~~l~~g~~~~l~l~~l~~~l~~~~~~ 373 (382)
...+..|+|+++.+|.+++++.+.++.
T Consensus 297 ~~~l~~n~n~~L~le~lll~~~~~~~~ 323 (325)
T PRK08699 297 APYGFHTLNVKMQIEHLLINYLELKKE 323 (325)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988764
No 69
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.94 E-value=3.2e-25 Score=203.82 Aligned_cols=209 Identities=21% Similarity=0.241 Sum_probs=165.0
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
....|..+|||.+|++++|+++.++.+..++.. ...+|++|+||||+|||++|+++++.+. ..+...++
T Consensus 11 ~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~------~~~~~~~~ 84 (328)
T PRK00080 11 EEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG------VNIRITSG 84 (328)
T ss_pred ccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC------CCeEEEec
Confidence 446788999999999999999999988877753 2345699999999999999999999983 22333333
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------
Q 016800 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------ 183 (382)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------ 183 (382)
+.......+...+..+ +...+++|||+|.++...++.|+..+++..
T Consensus 85 ~~~~~~~~l~~~l~~l----------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 85 PALEKPGDLAAILTNL----------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred ccccChHHHHHHHHhc----------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 3222222222222211 145699999999999888888988888652
Q ss_pred CceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 184 KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+...+|.+++....+.+++++||. .+.|++++.+++.+++.+.+...++.++++++..|++.++|++|.+.+.++....
T Consensus 149 ~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~ 228 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRD 228 (328)
T ss_pred CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 235678888888889999999985 7899999999999999999999999999999999999999999999999998765
Q ss_pred hc----CCCCChhhHhhhh
Q 016800 263 LF----GSSITSKDLISVS 277 (382)
Q Consensus 263 ~~----~~~It~~~v~~~~ 277 (382)
++ ...|+.+.+..+.
T Consensus 229 ~a~~~~~~~I~~~~v~~~l 247 (328)
T PRK00080 229 FAQVKGDGVITKEIADKAL 247 (328)
T ss_pred HHHHcCCCCCCHHHHHHHH
Confidence 54 3568877777665
No 70
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.94 E-value=7.4e-26 Score=185.67 Aligned_cols=141 Identities=38% Similarity=0.617 Sum_probs=112.7
Q ss_pred CcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-----------------CCceEEeecCCC--
Q 016800 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-----------------KSRVLELNASDD-- 124 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~-----------------~~~~~~~~~~~~-- 124 (382)
||+.+++.|.+.+++++.|| +||+||+|+||+++|..+++.++|.... ..++..+++...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 89999999999999999999 8999999999999999999999987643 456777766643
Q ss_pred -cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhh
Q 016800 125 -RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (382)
Q Consensus 125 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 203 (382)
..++++++....+...... +++||+|||++|.|+.+++|+|+++||+|+.++.||++|+++.+++++|+
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~----------~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSE----------GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TT----------SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHHhc----------CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 5788888666554333222 27899999999999999999999999999999999999999999999999
Q ss_pred cccceEEecCCC
Q 016800 204 SRCAKFRFKPLS 215 (382)
Q Consensus 204 sr~~~i~~~~~~ 215 (382)
|||+.+.|++++
T Consensus 151 SRc~~i~~~~ls 162 (162)
T PF13177_consen 151 SRCQVIRFRPLS 162 (162)
T ss_dssp TTSEEEEE----
T ss_pred hhceEEecCCCC
Confidence 999999999875
No 71
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.94 E-value=2.5e-25 Score=188.43 Aligned_cols=167 Identities=28% Similarity=0.451 Sum_probs=137.0
Q ss_pred HHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceEEeecC-CCcchHHH
Q 016800 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS-DDRGINVV 130 (382)
Q Consensus 71 ~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------------~~~~~~~~~~~-~~~~~~~~ 130 (382)
+.|.+.+..++.+| +||+||+|+|||++++.+++.+.|... ...++..+... ...+++.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 46788889999988 999999999999999999999987521 11122222222 23456777
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEE
Q 016800 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~ 210 (382)
+..+..+...... ++++||||||+|.++.++++.|++++|++++.+.||++++.+.++.++++|||..+.
T Consensus 82 ~~i~~~~~~~~~~----------~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~ 151 (188)
T TIGR00678 82 RELVEFLSRTPQE----------SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLP 151 (188)
T ss_pred HHHHHHHccCccc----------CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEee
Confidence 7766554433322 278999999999999999999999999999999999999988999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHH
Q 016800 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRA 253 (382)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a 253 (382)
|.+++.+++.+||.+. | ++++++..+++.++||+|.|
T Consensus 152 ~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred CCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 9999999999999664 4 78999999999999999874
No 72
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.6e-24 Score=183.97 Aligned_cols=205 Identities=21% Similarity=0.252 Sum_probs=163.4
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcC-----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.....||+.|+|++||+++++.+.-+++.. ...|+||+||||.||||+|..+|+++. .++....++...
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg------vn~k~tsGp~le 89 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG------VNLKITSGPALE 89 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc------CCeEeccccccc
Confidence 445678999999999999999988777543 456899999999999999999999983 333333343332
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CceE
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTR 187 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~~~~ 187 (382)
...++...+..+. +..|++|||+|++++...+.|...||++. +...
T Consensus 90 K~gDlaaiLt~Le----------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 90 KPGDLAAILTNLE----------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ChhhHHHHHhcCC----------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 3333333333211 56799999999999999999999999763 2333
Q ss_pred EEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--
Q 016800 188 FFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-- 264 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-- 264 (382)
+|-+|+....+..++++|+. +.+++.++.+|+..++.+-+...++.++++++..|+..|.|.||-|.++|.....++
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQV 233 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 66677888889999999998 779999999999999999999999999999999999999999999999999887765
Q ss_pred --CCCCChhhHhhhh
Q 016800 265 --GSSITSKDLISVS 277 (382)
Q Consensus 265 --~~~It~~~v~~~~ 277 (382)
+..|+.+.+.+++
T Consensus 234 ~~~~~I~~~ia~~aL 248 (332)
T COG2255 234 KGDGDIDRDIADKAL 248 (332)
T ss_pred hcCCcccHHHHHHHH
Confidence 3556665555444
No 73
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.93 E-value=2.9e-23 Score=191.26 Aligned_cols=276 Identities=16% Similarity=0.195 Sum_probs=221.8
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
+|.++|||+...-+...+..+.+.+..+.....++..+++.+.. .+...+......+.. +++++|+|
T Consensus 1 ~~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~---~~~~~~~~~~t~pff----------~~~rlVvv 67 (326)
T PRK07452 1 MPIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDAD---QAIQALNEAMTPPFG----------SGGRLVWL 67 (326)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccch---HHHHHHHHhcCCCCC----------CCceEEEE
Confidence 35699999999999999999998876665555666777765432 223333332222222 27899999
Q ss_pred eCCCCC---CHHHHHHHHHHHHhcCCceEEEEee-cCc---cccchhhhcccceEEecCC---CHHHHHHHHHHHHHHhC
Q 016800 162 DEADSM---TEDAQNALRRTMETYSKVTRFFFIC-NYI---SRIIEPLASRCAKFRFKPL---SEEVMSSRVLHICNEEG 231 (382)
Q Consensus 162 De~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~-~~~---~~l~~~l~sr~~~i~~~~~---~~~~~~~~l~~~~~~~~ 231 (382)
++++.+ +.+..+.|.++++++++.+.+|+++ +.. .+..+.+.+.+.+..|.++ +.+++..|+..++++.|
T Consensus 68 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g 147 (326)
T PRK07452 68 KNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELG 147 (326)
T ss_pred eCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcC
Confidence 998654 5677889999999988888888864 332 2456677777888888765 45779999999999999
Q ss_pred CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016800 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNII 308 (382)
Q Consensus 232 ~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 308 (382)
+.+++++++.+++.++||++.+.+.+++++.+. +..||.++|++++... ...++++++++..++...|+..+++|+
T Consensus 148 ~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~ 226 (326)
T PRK07452 148 VKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLL 226 (326)
T ss_pred CCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999984 4579999999999876 567889999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHh------------------------------------cCCCCHHHHHHHHHHHHHHhhHhhc
Q 016800 309 AEGYPASLLLSQLFDVVVE------------------------------------TEDISDEQQARICKCLAEVDKCLVD 352 (382)
Q Consensus 309 ~~g~~~~~i~~~l~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (382)
..|.+|..++..+.++++. .+.|+.+.+.+++..+.+++++++.
T Consensus 227 ~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~~D~~iK~ 306 (326)
T PRK07452 227 DANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLDLEASLKQ 306 (326)
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999988776554333221 1467788899999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 016800 353 GADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 353 g~~~~l~l~~l~~~l~~~~ 371 (382)
|.++...+|.++.++|+++
T Consensus 307 g~~~~~~le~~i~~~~~~~ 325 (326)
T PRK07452 307 GANPINALQDKLIELCQLL 325 (326)
T ss_pred CCChHHHHHHHHHHHHHhh
Confidence 9989889999999999986
No 74
>PRK05907 hypothetical protein; Provisional
Probab=99.93 E-value=1.3e-22 Score=182.51 Aligned_cols=276 Identities=12% Similarity=0.094 Sum_probs=220.6
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC
Q 016800 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (382)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (382)
...+.+.+++|+ |.+++||..- ......+.+.+..++. ..+++.+. ..+.+.+.... .+..+
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~-----~~fdg~~~-~~~~ii~~aet---lPfFa----- 68 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK-----SEFDGQGL-LQQELLSWTEH---FGLFA----- 68 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc-----ceecCCCC-CHHHHHHHHhc---CCccc-----
Confidence 456667788888 8899999887 6666777676654432 23455443 33444333333 22222
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEE-Eeec--CccccchhhhcccceE----EecCCCHHHHHHH
Q 016800 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF-FICN--YISRIIEPLASRCAKF----RFKPLSEEVMSSR 222 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I-l~~~--~~~~l~~~l~sr~~~i----~~~~~~~~~~~~~ 222 (382)
.+++|++.+.+.++....+.|.+++++|++.+.+| ++.. ...++.+.+.+ +..+ .|+++.+.++..|
T Consensus 69 -----erRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~k-~~~v~~~~e~~~l~e~~L~~W 142 (311)
T PRK05907 69 -----SQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLSS-ALCLSLFGEWFADRDKRIAQL 142 (311)
T ss_pred -----CeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHhh-cceeccccccCCCCHHHHHHH
Confidence 78899999888887767889999999999975555 4442 11223444543 4444 8999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc--CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHH
Q 016800 223 VLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF--GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDL 299 (382)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~--~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
+..++++.|..+++++++.++..+ +||+..+.+.+++++.+. +..||.++|++++....+.++|++++++..++..+
T Consensus 143 i~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~ 222 (311)
T PRK05907 143 LIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVE 222 (311)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHH
Confidence 999999999999999999999999 699999999999999985 46799999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHhc------------CC----CCHHHHHHHHHHHHHHhhHhhcC-CChHHHHH
Q 016800 300 ANKEVNNIIAE-GYPASLLLSQLFDVVVET------------ED----ISDEQQARICKCLAEVDKCLVDG-ADEYLQLL 361 (382)
Q Consensus 300 ~~~~l~~l~~~-g~~~~~i~~~l~~~~~~~------------~~----~~~~~~~~~~~~~~~~~~~l~~g-~~~~l~l~ 361 (382)
|++.+++|+.. |.+|..++..+.+++... .. |+...+.+++..+.++|+++++| .++.+.+|
T Consensus 223 Al~il~~Ll~~~ge~p~~ILall~rQfl~~~k~l~~~g~~~~~p~~vafs~~~L~~~~~~l~~~D~~iKtg~~d~~~~lE 302 (311)
T PRK05907 223 GHSLLRSLLSDMGEDPLGIIAFLRSQCLYGLRSIEEQSKERKHRIFVAYGKERLLQALNLLFYAESLIKNNVQDPILAVE 302 (311)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 99999999999 999999998887776210 12 78899999999999999999998 59999999
Q ss_pred HHHHHHHH
Q 016800 362 DVASNVIR 369 (382)
Q Consensus 362 ~l~~~l~~ 369 (382)
.|+++++.
T Consensus 303 lli~~~~~ 310 (311)
T PRK05907 303 TLVIRMTN 310 (311)
T ss_pred HHHHHHhc
Confidence 99999885
No 75
>PRK05629 hypothetical protein; Validated
Probab=99.93 E-value=6.6e-23 Score=187.56 Aligned_cols=273 Identities=12% Similarity=0.079 Sum_probs=226.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
|.+||||+...-.......+.+.+..++....++..+++.+.. ...+.+ ....+... ++++|+++
T Consensus 7 ~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~~l~~----~~t~slF~----------~~rlV~v~ 71 (318)
T PRK05629 7 PVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QGELLD----ALSPSLFG----------EDRVIVLT 71 (318)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HHHHHH----hhCcCccC----------CceEEEEe
Confidence 3489999988777777777777776655556788888877542 333322 22222222 78999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc---cccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 016800 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI---SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239 (382)
Q Consensus 163 e~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~---~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (382)
+++.......+.++.+++++++.+.+|+++... .++.+.++..+..++|.++...++..|+..++++.|+.++++++
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~ 151 (318)
T PRK05629 72 NMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVV 151 (318)
T ss_pred ChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 988776667788999999998888888877533 23556788888899999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHH
Q 016800 240 STLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319 (382)
Q Consensus 240 ~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~ 319 (382)
+.+++.+++|+..+.+.+++++.+.++.||.++|++++....+..++++++++..++...++..+++|+..|.+|..++.
T Consensus 152 ~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~pi~il~ 231 (318)
T PRK05629 152 HALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRALQLGVSPVALAA 231 (318)
T ss_pred HHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 99999999999999999999988767889999999999999999999999999999999999999999999999998866
Q ss_pred HHHHHHHh---------------------------------cCCCCHHHHHHHHHHHHHHhhHhhcC-CChHHHHHHHHH
Q 016800 320 QLFDVVVE---------------------------------TEDISDEQQARICKCLAEVDKCLVDG-ADEYLQLLDVAS 365 (382)
Q Consensus 320 ~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~l~l~~l~~ 365 (382)
.+.++++. .+.|+...+.+++..+.++|+.++.| .++.+.||.++.
T Consensus 232 ~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~~~d~~~~lE~~i~ 311 (318)
T PRK05629 232 ALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQGGDPEFAIESAVR 311 (318)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 55433211 05789999999999999999999986 599999999999
Q ss_pred HHHHH
Q 016800 366 NVIRA 370 (382)
Q Consensus 366 ~l~~~ 370 (382)
++.++
T Consensus 312 ~~~~~ 316 (318)
T PRK05629 312 RVAEL 316 (318)
T ss_pred HHHhh
Confidence 99874
No 76
>PRK07914 hypothetical protein; Reviewed
Probab=99.92 E-value=1e-22 Score=186.32 Aligned_cols=275 Identities=13% Similarity=0.089 Sum_probs=229.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
|.++|||+.-.........+.+.+.. ++....++..+++.+.. ... +......+... ++++|++
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~-~~~----i~~~~t~plF~----------~rRlV~v 70 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVS-TYE----LAELLSPSLFA----------EERVVVL 70 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCC-HHH----HHHhcCCCCCC----------CceEEEE
Confidence 45999999999999999999887765 35556677888876542 222 22322222222 8899999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc---cccchhhhccc-ceEEecCC-CHHHHHHHHHHHHHHhCCCCCH
Q 016800 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYI---SRIIEPLASRC-AKFRFKPL-SEEVMSSRVLHICNEEGLNLDA 236 (382)
Q Consensus 162 De~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~---~~l~~~l~sr~-~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 236 (382)
+++..+..+..+.|..+++++++.+.+|++.+.. .++.+++.+.. .++.|.++ +..++..|+...+++.|+.+++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~ 150 (320)
T PRK07914 71 EAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDD 150 (320)
T ss_pred eChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 9988777777789999999999988888875432 23456777665 48899998 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHH
Q 016800 237 EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASL 316 (382)
Q Consensus 237 ~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~ 316 (382)
++++.+++.++||+..+.+.+++++.+.++.||.++|.+++....+..++++++++..++..+++..+++|+..|.+|..
T Consensus 151 ~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~~~ge~p~~ 230 (320)
T PRK07914 151 DTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPHVV 230 (320)
T ss_pred HHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHHHCCCchHH
Confidence 99999999999999999999999987667889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhc-------------------------------CCCCHHHHHHHHHHHHHHhhHhhcC-CChHHHHHHHH
Q 016800 317 LLSQLFDVVVET-------------------------------EDISDEQQARICKCLAEVDKCLVDG-ADEYLQLLDVA 364 (382)
Q Consensus 317 i~~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~l~l~~l~ 364 (382)
++..+.++++.. +.|+...+.+++..+.++|.++|.| .++.+.||.++
T Consensus 231 il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~~~~~~~~lE~~i 310 (320)
T PRK07914 231 LADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAADADYALESAV 310 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 877665554431 5899999999999999999999987 69999999999
Q ss_pred HHHHHHHc
Q 016800 365 SNVIRAVC 372 (382)
Q Consensus 365 ~~l~~~~~ 372 (382)
++++++..
T Consensus 311 ~~~~~~~~ 318 (320)
T PRK07914 311 RRVAELVA 318 (320)
T ss_pred HHHHHHhc
Confidence 99998753
No 77
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.92 E-value=8.9e-24 Score=204.45 Aligned_cols=233 Identities=25% Similarity=0.335 Sum_probs=173.5
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceEEeecC
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNAS 122 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~----~~~~~~~~~~~~~ 122 (382)
=..||.+||||.+|++++|+++.++.+...+......|++|+||||||||++|+++.+..... ...+..++++++.
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 367999999999999999999999999988877777789999999999999999998764321 1113567888875
Q ss_pred CCcc-hHHHHHH-HHH----HHHhh--hc-CC---CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------
Q 016800 123 DDRG-INVVRTK-IKT----FAAVA--VG-SG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------- 183 (382)
Q Consensus 123 ~~~~-~~~~~~~-l~~----~~~~~--~~-~~---~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------- 183 (382)
.... ...+.+. +.. ..... .+ .+ ...+.+......+++|||++.|++..|+.|++.||+..
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~ 210 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAY 210 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccc
Confidence 3111 0111111 100 00000 00 00 01112223456799999999999999999999998631
Q ss_pred ---------------------CceEEEEee-cCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 016800 184 ---------------------KVTRFFFIC-NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241 (382)
Q Consensus 184 ---------------------~~~~~Il~~-~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (382)
..+++|++| +.+..+.+++++||..+.|++++.+++..++++.+++.++.+++++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~ 290 (531)
T TIGR02902 211 YNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALEL 290 (531)
T ss_pred ccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 234555554 5678899999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCCC
Q 016800 242 LSSISQGDLRRAITYLQGAARLF----GSSITSKDLISVSGVI 280 (382)
Q Consensus 242 l~~~s~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~~ 280 (382)
|..++. |.|.+.++++.++..+ ...|+.+++..++...
T Consensus 291 I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 291 IVKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 888765 8999999999887654 2469999999988644
No 78
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.92 E-value=2e-23 Score=190.74 Aligned_cols=199 Identities=20% Similarity=0.233 Sum_probs=155.6
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
++|++++|+++.++.+..++.. +..+|++|+||||+|||++++++++.+.. .+....+........+..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------~~~~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------NLKITSGPALEKPGDLAA 74 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------CEEEeccchhcCchhHHH
Confidence 4789999999999999988863 44567999999999999999999998732 233333322222223332
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CceEEEEeecC
Q 016800 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRFFFICNY 194 (382)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~~~~~Il~~~~ 194 (382)
.+... +...+++|||++.++.+.++.|+..+++.. +...+|.+++.
T Consensus 75 ~l~~~----------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~ 138 (305)
T TIGR00635 75 ILTNL----------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred HHHhc----------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC
Confidence 22221 144699999999999999999998887433 23567777888
Q ss_pred ccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CCCCC
Q 016800 195 ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSIT 269 (382)
Q Consensus 195 ~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~----~~~It 269 (382)
+..+.+++++||. .+.|++++.+++.+++.+.+...++.++++++..|++.++|++|.+.+.+..++..+ ...|+
T Consensus 139 ~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it 218 (305)
T TIGR00635 139 AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIIN 218 (305)
T ss_pred ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcC
Confidence 8889999999996 679999999999999999999999999999999999999999999999998876543 34588
Q ss_pred hhhHhhhhC
Q 016800 270 SKDLISVSG 278 (382)
Q Consensus 270 ~~~v~~~~~ 278 (382)
.+.+.....
T Consensus 219 ~~~v~~~l~ 227 (305)
T TIGR00635 219 RDIALKALE 227 (305)
T ss_pred HHHHHHHHH
Confidence 887776653
No 79
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.92 E-value=6.5e-23 Score=193.74 Aligned_cols=216 Identities=30% Similarity=0.437 Sum_probs=177.3
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcC--------------------------------CCCc--EEEeCCCCCC
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA--------------------------------NCPH--MLFYGPPGTG 94 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~--------------------------------~~~~--lll~Gp~G~G 94 (382)
..|++||+|+.|.|++|.+.+-+.+..|++.. +++. +||+||||.|
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 38999999999999999999999999888431 2222 8999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHH
Q 016800 95 KTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNA 174 (382)
Q Consensus 95 Kt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~ 174 (382)
|||+|+.+|++. ++.++++|++|.+....+++.+....+...... ..+++..+||||+|.-...+.+.
T Consensus 339 KTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~------adsrP~CLViDEIDGa~~~~Vdv 406 (877)
T KOG1969|consen 339 KTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHSVLD------ADSRPVCLVIDEIDGAPRAAVDV 406 (877)
T ss_pred hhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhccccc------cCCCcceEEEecccCCcHHHHHH
Confidence 999999999997 688999999999999999888887665432221 01267899999999999999999
Q ss_pred HHHHHHh--c----C---------------CceEEEEeecCccc-cchhhhcccceEEecCCCHHHHHHHHHHHHHHhCC
Q 016800 175 LRRTMET--Y----S---------------KVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGL 232 (382)
Q Consensus 175 Ll~~le~--~----~---------------~~~~~Il~~~~~~~-l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 232 (382)
++.+++. + + -.-.||++||+... -+..|+--|.++.|.+++..-+.+.|+.+|..||+
T Consensus 407 ilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m 486 (877)
T KOG1969|consen 407 ILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM 486 (877)
T ss_pred HHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC
Confidence 9999871 1 1 11248999987643 45667777889999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC---CCChhhHhhh
Q 016800 233 NLDAEALSTLSSISQGDLRRAITYLQGAARLFGS---SITSKDLISV 276 (382)
Q Consensus 233 ~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~---~It~~~v~~~ 276 (382)
..+..++..|++.+.+|+|.+||.||.++..... .|.+.++-+.
T Consensus 487 r~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~ 533 (877)
T KOG1969|consen 487 RADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAK 533 (877)
T ss_pred CCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhh
Confidence 9999999999999999999999999999887532 3555555443
No 80
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=1.8e-22 Score=173.60 Aligned_cols=162 Identities=15% Similarity=0.169 Sum_probs=127.5
Q ss_pred CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC----------------CCCceEEeecC-CCcchHHHHHHHHHHHHhhh
Q 016800 81 NCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------YKSRVLELNAS-DDRGINVVRTKIKTFAAVAV 142 (382)
Q Consensus 81 ~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~----------------~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 142 (382)
..|| +||+||+|+||..+|.++++.++|... .+.++..+.+. ...+++++++....+...+.
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3567 999999999999999999999998641 12334443332 24567888887776654332
Q ss_pred cCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCC--------
Q 016800 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL-------- 214 (382)
Q Consensus 143 ~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~-------- 214 (382)
.. +++||+|||++|+|+.+++|+|++++|+||+++.||++|+.++.+++||+|||+.+.|+++
T Consensus 85 e~---------~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~ 155 (261)
T PRK05818 85 ES---------NGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKV 155 (261)
T ss_pred hc---------CCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhccccc
Confidence 22 3789999999999999999999999999999999999999999999999999999999888
Q ss_pred --CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 016800 215 --SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (382)
Q Consensus 215 --~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~ 260 (382)
++.++.+.+.. ..+ +++ .++..++|++.+++..++.+
T Consensus 156 ~~~~~~i~~~L~~---~~~--~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 156 ESNDRYFQYILLS---FYS--VDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred ccChHHHHHHHHH---ccC--ccH----HHHHHcCCCHHHHHHHHHHH
Confidence 55666666532 222 333 66778899999999988844
No 81
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.90 E-value=4.3e-21 Score=178.00 Aligned_cols=283 Identities=15% Similarity=0.108 Sum_probs=221.6
Q ss_pred HHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC
Q 016800 73 LTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (382)
Q Consensus 73 l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (382)
+...+.. +..|.++|||+........+..+.+.+..+.....++..+++.+.. ..+.+.+......+..+
T Consensus 9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~--~~~~~~~~~~~t~slF~------ 80 (343)
T PRK06585 9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLD--ADPARLEDEANAISLFG------ 80 (343)
T ss_pred HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhh--cCHHHHHHHHhCCCCCC------
Confidence 3444443 3555699999999999999999998875544334455666554321 01233333333333332
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc---ccchhhh--cccceEEecCCCHHHHHHHHHH
Q 016800 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RIIEPLA--SRCAKFRFKPLSEEVMSSRVLH 225 (382)
Q Consensus 151 ~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~--sr~~~i~~~~~~~~~~~~~l~~ 225 (382)
++++|++.+.+ ....+.|..+++.+++.+.+|+.+...+ ++.+.+. ..+..+.|.+++..++..|+.+
T Consensus 81 ----~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~ 153 (343)
T PRK06585 81 ----GRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDD 153 (343)
T ss_pred ----CceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHH
Confidence 77899999654 3456678899999888888887764432 2333332 2344788999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--CCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 016800 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG--SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKE 303 (382)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~--~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (382)
+++..|+.+++++++.+++.++||++.+.+.+++++.+++ +.||.++|.+++....+..++++++++..++...++..
T Consensus 154 ~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~ 233 (343)
T PRK06585 154 ELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERA 233 (343)
T ss_pred HHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999873 57999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhc------------------------------------CCCCHHHHHHHHHHHHHHh
Q 016800 304 VNNIIAEGYPASLLLSQLFDVVVET------------------------------------EDISDEQQARICKCLAEVD 347 (382)
Q Consensus 304 l~~l~~~g~~~~~i~~~l~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~ 347 (382)
+..|+..|.+|..++..+.++++.. ..|+...+.+++..+.+++
T Consensus 234 l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d 313 (343)
T PRK06585 234 LDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAE 313 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999998877665554431 4677888999999999999
Q ss_pred hHhhcC-CChHHHHHHHHHHHHHH
Q 016800 348 KCLVDG-ADEYLQLLDVASNVIRA 370 (382)
Q Consensus 348 ~~l~~g-~~~~l~l~~l~~~l~~~ 370 (382)
..++.| .++.+.+|.+++++++.
T Consensus 314 ~~lK~~~~~~~~~le~~i~~~~~~ 337 (343)
T PRK06585 314 LDCRRNPALADAIARRVLLSIAVR 337 (343)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHH
Confidence 999987 48899999999999874
No 82
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.89 E-value=3.3e-20 Score=170.31 Aligned_cols=282 Identities=19% Similarity=0.184 Sum_probs=219.5
Q ss_pred HHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC
Q 016800 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (382)
Q Consensus 71 ~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (382)
..+.+.++.+..++ ++|||..-.-....+..+.+.+..++. ... +.++ + ...+ +.+......+..+
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~-~~~-~~~~--~-~~~~---~i~~~~~t~plF~----- 70 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENE-LKT-LYFD--E-YDFE---QAKDFLSQSSLFG----- 70 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchH-hhh-hchh--h-ccHH---HHHHHHhcccccC-----
Confidence 46677788887666 899999999999999999887644332 111 2222 1 1223 3333333333332
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc---ccchhhhcc--cceEEecCCCHHHHHHHHH
Q 016800 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RIIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~sr--~~~i~~~~~~~~~~~~~l~ 224 (382)
++++|++.+.........+.|..+++.+++.+.+|++..... ++.+.+... +..+.|.+++..++..|+.
T Consensus 71 -----~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~ 145 (328)
T PRK08487 71 -----GKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQ 145 (328)
T ss_pred -----CceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHH
Confidence 789999998877766667889999999887776666444332 222333332 4578999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHH
Q 016800 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV 304 (382)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (382)
.++++.|+.++++++..++..+++|+..+.+.+++++.+. +.||.++|.+++....+..++++++++..++ .++..+
T Consensus 146 ~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~-~~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l 222 (328)
T PRK08487 146 ERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILN-EPITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDL 222 (328)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhc-CCCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHH
Confidence 9999999999999999999999999999999999999985 4899999999999999999999999999988 578888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHh-----------------------------------cCCCCHHHHHHHHHHHHHHhhH
Q 016800 305 NNIIAEGYPASLLLSQLFDVVVE-----------------------------------TEDISDEQQARICKCLAEVDKC 349 (382)
Q Consensus 305 ~~l~~~g~~~~~i~~~l~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 349 (382)
++|+..|.+|..++..+.++++. .+.|+...+..++..+.++|++
T Consensus 223 ~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~L~e~D~~ 302 (328)
T PRK08487 223 EKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFELLLEWELE 302 (328)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 89988999998876655444322 1478888899999999999999
Q ss_pred hhcC--CChHHHHHHHHHHHHHHHcc
Q 016800 350 LVDG--ADEYLQLLDVASNVIRAVCN 373 (382)
Q Consensus 350 l~~g--~~~~l~l~~l~~~l~~~~~~ 373 (382)
++.| -+..+.++..++++..++++
T Consensus 303 lK~g~~~~~~~~~~~~~~~~~~~~~~ 328 (328)
T PRK08487 303 LKTGQKIDKNLFLLSTLIKIQKILNP 328 (328)
T ss_pred HHcCCCccHHHHHHHHHHHHHHHhcC
Confidence 9999 46688889899999988864
No 83
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.89 E-value=2.8e-20 Score=172.71 Aligned_cols=284 Identities=19% Similarity=0.175 Sum_probs=220.5
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC
Q 016800 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (382)
Q Consensus 71 ~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (382)
..+.+.+..+-.+.++|+|+.-.-+...+..+.+....++....++..+++.+. ..+.+.+.+ ...+..+
T Consensus 6 ~~~~~~~~~~~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~~l~~~~---~t~~lF~------ 75 (340)
T PRK05574 6 EQLEKQLKKGLAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSET-DWDDVLEAC---QSLPLFS------ 75 (340)
T ss_pred HHHHHHHhCCCCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCC-CHHHHHHHh---hccCccc------
Confidence 345556666633349999998777777778887766544444556666666643 333333322 2222222
Q ss_pred CCCCCcEEEEEeCCCCCCHHHH----HHHHHHHHhcCC--ceEEEEeecCcc---cc---chhhhcccceEEecCCCHHH
Q 016800 151 YPCPPYKIIILDEADSMTEDAQ----NALRRTMETYSK--VTRFFFICNYIS---RI---IEPLASRCAKFRFKPLSEEV 218 (382)
Q Consensus 151 ~~~~~~~vliiDe~d~l~~~~~----~~Ll~~le~~~~--~~~~Il~~~~~~---~l---~~~l~sr~~~i~~~~~~~~~ 218 (382)
++++|+|++++.+..... ..|..++ ++++ ...+++.++..+ ++ .+++.+++..+.|.+++..+
T Consensus 76 ----~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~ 150 (340)
T PRK05574 76 ----DRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAE 150 (340)
T ss_pred ----cCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHH
Confidence 778999999999876533 3344444 3343 334455544322 23 67888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCH
Q 016800 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDF 297 (382)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
+..|+...++..|+.+++++++.+++.++||++.+.+.+++++.+. ++.||.++|.+++....+..++++++++..++.
T Consensus 151 ~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~ 230 (340)
T PRK05574 151 LPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKI 230 (340)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999887 345999999999998888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------------------CCCCHHHHHHHHHHH
Q 016800 298 DLANKEVNNIIAEGYPASLLLSQLFDVVVET----------------------------------EDISDEQQARICKCL 343 (382)
Q Consensus 298 ~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 343 (382)
..++..+..++..|.+|..++..+.++++.. +.|+.+.+.+++..+
T Consensus 231 ~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~~L 310 (340)
T PRK05574 231 KRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQLL 310 (340)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999988777665544321 578899999999999
Q ss_pred HHHhhHhhcC--CChHHHHHHHHHHHHH
Q 016800 344 AEVDKCLVDG--ADEYLQLLDVASNVIR 369 (382)
Q Consensus 344 ~~~~~~l~~g--~~~~l~l~~l~~~l~~ 369 (382)
.+++..++.| .++.+.||.+++++|+
T Consensus 311 ~~~d~~iK~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 311 AETDYQIKTGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence 9999999999 5999999999999985
No 84
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.89 E-value=1.4e-20 Score=171.93 Aligned_cols=256 Identities=17% Similarity=0.165 Sum_probs=208.0
Q ss_pred HHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHH
Q 016800 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRR 177 (382)
Q Consensus 99 a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-~~~~~~Ll~ 177 (382)
+..+.+.+..++..+.+++.+++.+. ..+.+.+.+. ..+..+ ++++++|++++.+. ....+.|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~l~~~~~---~~slf~----------~~kliii~~~~~~~~~~~~~~L~~ 69 (302)
T TIGR01128 4 ADAIRAAALAQGFDEFNVFRIDGEEF-DWNQLLEEAQ---TLPLFS----------ERRLVELRNPEGKPGAKGLKALEE 69 (302)
T ss_pred HHHHHHHHHhCCCchheeeeeccCCC-CHHHHHHHhh---ccCccc----------CCeEEEEECCCCCCCHHHHHHHHH
Confidence 45555665555555667777777654 3343333222 222222 67999999999986 456799999
Q ss_pred HHHhcCCceEEEEeecCccc---cchhhh--cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHH
Q 016800 178 TMETYSKVTRFFFICNYISR---IIEPLA--SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252 (382)
Q Consensus 178 ~le~~~~~~~~Il~~~~~~~---l~~~l~--sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~ 252 (382)
+++++++++.+|++++..+. +.+.+. ++|..+.|.+++..++..|+...+++.|+.+++++++.+++.++||++.
T Consensus 70 ~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~ 149 (302)
T TIGR01128 70 YLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLA 149 (302)
T ss_pred HHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999888888765432 223343 4999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---
Q 016800 253 AITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET--- 328 (382)
Q Consensus 253 a~~~l~~~~~~~-~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--- 328 (382)
+.+.+++++.+. ++.||.++|..++.......++++++++..++...++..++.+...|.+|..++..+.++++..
T Consensus 150 l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~ 229 (302)
T TIGR01128 150 IAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQL 229 (302)
T ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999986 4579999999999988888899999999999999999999999999999988777665544321
Q ss_pred -------------------------------CCCCHHHHHHHHHHHHHHhhHhh-cC-CChHHHHHHHHHHHH
Q 016800 329 -------------------------------EDISDEQQARICKCLAEVDKCLV-DG-ADEYLQLLDVASNVI 368 (382)
Q Consensus 329 -------------------------------~~~~~~~~~~~~~~~~~~~~~l~-~g-~~~~l~l~~l~~~l~ 368 (382)
+.|+...+..++..+.+++..++ .| .++.+.+|.+++++|
T Consensus 230 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 230 KRLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 46778899999999999999999 34 799999999999885
No 85
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.88 E-value=9.4e-21 Score=165.42 Aligned_cols=200 Identities=15% Similarity=0.158 Sum_probs=148.1
Q ss_pred CCCCccc--CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVA--HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~--g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
.+|++++ ++..++..+.++......++++|+||+|+||||+++++++.+...+ ..+.+++..... ....+.++
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~---~~v~y~~~~~~~--~~~~~~~~ 93 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRG---RAVGYVPLDKRA--WFVPEVLE 93 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEEHHHHh--hhhHHHHH
Confidence 3778777 4677888888888776666799999999999999999999874321 233333332210 11112122
Q ss_pred HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcC--CceEEEEeecCc-cc---cchhhhccc-
Q 016800 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYS--KVTRFFFICNYI-SR---IIEPLASRC- 206 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~--~~~~~Il~~~~~-~~---l~~~l~sr~- 206 (382)
.+. ...+++|||++.+. +..+..|+.++.... +...+|++++.+ .. +.+.++||+
T Consensus 94 ~~~----------------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~ 157 (235)
T PRK08084 94 GME----------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLD 157 (235)
T ss_pred Hhh----------------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHh
Confidence 211 33599999999985 345666766666542 234577777654 33 579999999
Q ss_pred --ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhhC
Q 016800 207 --AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (382)
Q Consensus 207 --~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~~ 278 (382)
.++.+++|+.++..+++++.+...|+.++++++++|++.++||+|.+++.++.+...+ +..||.+.++++++
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 6999999999999999999898889999999999999999999999999999875332 57799888877653
No 86
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=4.2e-21 Score=186.38 Aligned_cols=212 Identities=21% Similarity=0.313 Sum_probs=136.6
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-----EEEeCCCCCCHHHHHHHHHHHhcCCC--CCCCceEE
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-----MLFYGPPGTGKTTTALAIAHQLFGPE--LYKSRVLE 118 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-----lll~Gp~G~GKt~la~~la~~l~~~~--~~~~~~~~ 118 (382)
....||.+||+|.+++|++||++.++.+..|+.....++ ++|+||+|+|||++++.+++.+...- +.+ .+..
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~n-pv~~ 147 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSN-PTLP 147 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhh-hhhh
Confidence 345799999999999999999999999999998754433 89999999999999999999873210 100 0000
Q ss_pred eecCC---------------CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH-hc
Q 016800 119 LNASD---------------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME-TY 182 (382)
Q Consensus 119 ~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le-~~ 182 (382)
....+ ....+.....+....... ...+....++++||+|||++.+.......+..++. ..
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~----~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~ 223 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKL----QMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKY 223 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhh----cccccccCCceeEEEeecchhhchhhHHHHHHHHHHHh
Confidence 00000 011122222222111000 00000112367899999998775433222333322 11
Q ss_pred --CCceEEEEeecC-cc-------c-------cchhhhc--ccceEEecCCCHHHHHHHHHHHHHHhCCC------C-CH
Q 016800 183 --SKVTRFFFICNY-IS-------R-------IIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNEEGLN------L-DA 236 (382)
Q Consensus 183 --~~~~~~Il~~~~-~~-------~-------l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~------~-~~ 236 (382)
...+.+|++++. +. . +.+.+++ |+.+|.|+|++..++.+.|.++++.++.. + ++
T Consensus 224 ~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~ 303 (637)
T TIGR00602 224 VSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKK 303 (637)
T ss_pred hcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCH
Confidence 223345555442 11 1 2368887 56689999999999999999999887532 2 46
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 237 EALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 237 ~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+++..|+..++||+|.||+.||.++.
T Consensus 304 ~~l~~I~~~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 304 TSVELLCQGCSGDIRSAINSLQFSSS 329 (637)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 78999999999999999999998764
No 87
>PRK06893 DNA replication initiation factor; Validated
Probab=99.86 E-value=2.8e-20 Score=161.91 Aligned_cols=201 Identities=13% Similarity=0.191 Sum_probs=141.5
Q ss_pred CCCCCcccCcHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 57 PKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 57 p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
+.+|+++++++... ..+.+.......|.++||||||+||||+++++++++...+ ..+..++..... ......+
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~y~~~~~~~--~~~~~~~ 86 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ---RTAIYIPLSKSQ--YFSPAVL 86 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEeeHHHhh--hhhHHHH
Confidence 46899999765432 3333333344445589999999999999999999874332 223333332110 0011111
Q ss_pred HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC--ceEEEEeecC-ccc---cchhhhccc
Q 016800 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK--VTRFFFICNY-ISR---IIEPLASRC 206 (382)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~--~~~~Il~~~~-~~~---l~~~l~sr~ 206 (382)
..+. +..+++|||++.+. ...+..|+.+++.... ...+|++++. +.. ..+.++||+
T Consensus 87 ~~~~----------------~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl 150 (229)
T PRK06893 87 ENLE----------------QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL 150 (229)
T ss_pred hhcc----------------cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH
Confidence 1111 45699999999874 3445678888876543 3345566654 332 458999998
Q ss_pred c---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhhC
Q 016800 207 A---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (382)
Q Consensus 207 ~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~~ 278 (382)
. .+.+++|+.++...++++.+...++.++++++++|++.++||+|.+++.++.+...+ +..||.+.++++++
T Consensus 151 ~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 151 TWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred hcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 7 899999999999999999999999999999999999999999999999998775332 46799888877653
No 88
>PRK08727 hypothetical protein; Validated
Probab=99.86 E-value=1e-19 Score=158.74 Aligned_cols=208 Identities=18% Similarity=0.239 Sum_probs=146.1
Q ss_pred hhhhhcCC-CCCCcccCcH-HHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch
Q 016800 50 PWVEKYRP-KQVKDVAHQE-EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (382)
Q Consensus 50 ~~~~k~~p-~~~~~~~g~~-~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (382)
|+.-.++| .+|+++++.+ .....+...........++|+||+|+||||++.+++..+...+ ..+..++..+. .
T Consensus 7 ~l~~~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~~--~ 81 (233)
T PRK08727 7 PLALRYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQAA--A 81 (233)
T ss_pred cccCCCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHHh--h
Confidence 33333444 4888888654 3344444443333223399999999999999999999874432 23444443221 1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcC-CceEEEEeecCc-c---ccch
Q 016800 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYS-KVTRFFFICNYI-S---RIIE 200 (382)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~-~~~~~Il~~~~~-~---~l~~ 200 (382)
..+...+..+. +..+|+|||++.+. ...+..++.+++... ....+|++++.+ . .+.+
T Consensus 82 ~~~~~~~~~l~----------------~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 82 GRLRDALEALE----------------GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred hhHHHHHHHHh----------------cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 11222222221 44699999999985 445677888887543 234577877653 3 3579
Q ss_pred hhhcc---cceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh---cCCCCChhhHh
Q 016800 201 PLASR---CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKDLI 274 (382)
Q Consensus 201 ~l~sr---~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~---~~~~It~~~v~ 274 (382)
.++|| +..+.|++|+.+++..++++++...++.+++++++.|++.++||+|.+++.++.+... .+..||.+.++
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~ 225 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLR 225 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999 7799999999999999999999999999999999999999999999999998877532 25678888777
Q ss_pred hhhC
Q 016800 275 SVSG 278 (382)
Q Consensus 275 ~~~~ 278 (382)
+++.
T Consensus 226 ~~l~ 229 (233)
T PRK08727 226 RVLE 229 (233)
T ss_pred HHHh
Confidence 7653
No 89
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.85 E-value=3.3e-19 Score=173.40 Aligned_cols=229 Identities=20% Similarity=0.215 Sum_probs=157.8
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc---CCCC-c-EEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceE
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET---ANCP-H-MLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVL 117 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~---~~~~-~-lll~Gp~G~GKt~la~~la~~l~~~----~~~~~~~~ 117 (382)
+...+...|.| +.++|+++.++.|..++.. +..+ + ++|+|+||||||++++.+.+.+... ......++
T Consensus 744 A~rvL~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vV 820 (1164)
T PTZ00112 744 AIRMMQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVF 820 (1164)
T ss_pred HHHHcCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 33455566777 6788999988877776653 2333 4 5799999999999999999887321 12235678
Q ss_pred EeecCCCcchHHHHHHHH-HHHHhhhcCCCC--------CCCC--CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---
Q 016800 118 ELNASDDRGINVVRTKIK-TFAAVAVGSGQR--------RGGY--PCPPYKIIILDEADSMTEDAQNALRRTMETYS--- 183 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~--------~~~~--~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~--- 183 (382)
++||........+...+. .+.......+.. .... ......||||||+|.+....++.|+.+++.+.
T Consensus 821 YINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~ 900 (1164)
T PTZ00112 821 EINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKIN 900 (1164)
T ss_pred EEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccC
Confidence 999865433332222221 110000000000 0000 01134599999999998777888888887543
Q ss_pred CceEEEEeecC---ccccchhhhcccc--eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---hcCCCHHHHHH
Q 016800 184 KVTRFFFICNY---ISRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS---ISQGDLRRAIT 255 (382)
Q Consensus 184 ~~~~~Il~~~~---~~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---~s~gdlr~a~~ 255 (382)
..+.+|.++|. +..+.+.++||+. .+.|+|++.+++.++|..++......+++++++.+++ ..+||.|.|++
T Consensus 901 SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALD 980 (1164)
T PTZ00112 901 SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQ 980 (1164)
T ss_pred CeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHH
Confidence 34556677765 4567889999987 5999999999999999999986544589999999998 66899999999
Q ss_pred HHHHHHHhc-CCCCChhhHhhhhC
Q 016800 256 YLQGAARLF-GSSITSKDLISVSG 278 (382)
Q Consensus 256 ~l~~~~~~~-~~~It~~~v~~~~~ 278 (382)
+|..++... +..|+.++|.++..
T Consensus 981 ILRrAgEikegskVT~eHVrkAle 1004 (1164)
T PTZ00112 981 ICRKAFENKRGQKIVPRDITEATN 1004 (1164)
T ss_pred HHHHHHhhcCCCccCHHHHHHHHH
Confidence 999887654 45688888887764
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.85 E-value=1.2e-19 Score=158.41 Aligned_cols=197 Identities=17% Similarity=0.202 Sum_probs=148.9
Q ss_pred CCCCCccc--CcHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH
Q 016800 57 PKQVKDVA--HQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 57 p~~~~~~~--g~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
|.+|++++ +++.+...+..+.... ...+++|+||+|+|||++++++++.....+ ..+..+++.... ..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~------~~ 84 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPL------LA 84 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhH------HH
Confidence 56788888 3467778888877633 334599999999999999999999874432 345555554321 11
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCc--eEEEEeecCcc---ccchhhhccc--
Q 016800 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV--TRFFFICNYIS---RIIEPLASRC-- 206 (382)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~--~~~Il~~~~~~---~l~~~l~sr~-- 206 (382)
+.. . ....+|+|||++.++...+..|+.+++..... ..+|++++.+. .+.+.+.||+
T Consensus 85 ~~~------~----------~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 85 FDF------D----------PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW 148 (227)
T ss_pred Hhh------c----------ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc
Confidence 100 0 04469999999999988899999999764432 23555554322 3557788886
Q ss_pred -ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhhC
Q 016800 207 -AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (382)
Q Consensus 207 -~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~~ 278 (382)
..+.++|++.++...++...+.+.++.+++++++.|++.++||++.+.+.++.+..++ +..||...++++++
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLA 224 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 5899999999999999999998999999999999999999999999999998876544 57899999888775
No 91
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.84 E-value=7.5e-18 Score=158.02 Aligned_cols=232 Identities=18% Similarity=0.229 Sum_probs=153.3
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceEE
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLE 118 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~~~ 118 (382)
.....+...|.|. +++|+++.++.+..++.. +..++++|+||||+|||++++.+++.+.... .....+++
T Consensus 3 ~~~~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~ 79 (365)
T TIGR02928 3 RNRDLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVY 79 (365)
T ss_pred CChhhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 3455677888884 678999999888887763 3444699999999999999999998874211 11146778
Q ss_pred eecCCCcchHH-HHHHHHHHHH--hhhc-CCCCC--------CCC-CCCCcEEEEEeCCCCCCHHHHHHHHHHHH-----
Q 016800 119 LNASDDRGINV-VRTKIKTFAA--VAVG-SGQRR--------GGY-PCPPYKIIILDEADSMTEDAQNALRRTME----- 180 (382)
Q Consensus 119 ~~~~~~~~~~~-~~~~l~~~~~--~~~~-~~~~~--------~~~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le----- 180 (382)
+++........ +......+.. .... .+... ... ..++..||+|||+|.+....+..|..++.
T Consensus 80 in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~ 159 (365)
T TIGR02928 80 VNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG 159 (365)
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccccc
Confidence 88865433222 2222222211 0000 00000 000 12256789999999995332333333332
Q ss_pred hcC-CceEEEEeecCcc---ccchhhhcccc--eEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHH---hcCCC
Q 016800 181 TYS-KVTRFFFICNYIS---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSS---ISQGD 249 (382)
Q Consensus 181 ~~~-~~~~~Il~~~~~~---~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~---~s~gd 249 (382)
+.+ .++.+|+++|.+. .+.+.+.+|+. .+.|+|++.+++.+++..+++. .+..+++++++.++. .++||
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 239 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD 239 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC
Confidence 222 4567888888764 57788888884 7999999999999999998863 223478887776554 55799
Q ss_pred HHHHHHHHHHHHHhc----CCCCChhhHhhhhCCC
Q 016800 250 LRRAITYLQGAARLF----GSSITSKDLISVSGVI 280 (382)
Q Consensus 250 lr~a~~~l~~~~~~~----~~~It~~~v~~~~~~~ 280 (382)
+|.+++.+..++..+ ...||.++|.++....
T Consensus 240 ~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 240 ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 999999999877654 2569999998877543
No 92
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=152.51 Aligned_cols=177 Identities=27% Similarity=0.319 Sum_probs=132.1
Q ss_pred cCCCCCCcccCcHHHHH---HHHHHHHcC------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 55 YRPKQVKDVAHQEEVVR---VLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~---~l~~~l~~~------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
...-+|+|++||+++++ .+.+++++. .+.++|||||||||||++|++++++. +..++.+++....
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------kvp~l~vkat~li 188 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------KVPLLLVKATELI 188 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc------CCceEEechHHHH
Confidence 34458999999999884 456666553 34569999999999999999999987 4566666665433
Q ss_pred ch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC------------HHHHHHHHHHHHhc--CCceEEE
Q 016800 126 GI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQNALRRTMETY--SKVTRFF 189 (382)
Q Consensus 126 ~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~------------~~~~~~Ll~~le~~--~~~~~~I 189 (382)
+. .+....+..+...+... .+.|++|||+|.+. .+..|+|+.-|+.. ...++.|
T Consensus 189 GehVGdgar~Ihely~rA~~~----------aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 189 GEHVGDGARRIHELYERARKA----------APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhc----------CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 21 12223333333332222 56799999999874 23568888888754 3467788
Q ss_pred EeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 016800 190 FICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (382)
Q Consensus 190 l~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g 248 (382)
.+||.+..++++++||+. .|+|.-|+.++...++...+++.-++++.+ ++.++..++|
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g 317 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKG 317 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCC
Confidence 889999999999999998 899999999999999999998877766655 7777877755
No 93
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.84 E-value=1.6e-19 Score=157.71 Aligned_cols=200 Identities=17% Similarity=0.190 Sum_probs=147.9
Q ss_pred CCCCCccc--CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 57 PKQVKDVA--HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 57 p~~~~~~~--g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
|.+|++++ ++...+..+.+++......+++|+||+|||||++++.+++.....+ ..++.+++.+... .....+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~---~~~~~i~~~~~~~--~~~~~~ 85 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQ--ADPEVL 85 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEeHHHHHH--hHHHHH
Confidence 45778887 3677889999988766666799999999999999999999874332 3455566543211 111111
Q ss_pred HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcC-CceEEEEeecCcc-c--cc-hhhhcccc
Q 016800 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYS-KVTRFFFICNYIS-R--II-EPLASRCA 207 (382)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~--~~~Ll~~le~~~-~~~~~Il~~~~~~-~--l~-~~l~sr~~ 207 (382)
..+ . +..+|+|||++.++... ++.|+.+++... ....+|++++... . .. +.+.+|+.
T Consensus 86 ~~~------~----------~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 86 EGL------E----------QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred hhc------c----------cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 110 0 34599999999998643 788888877532 2346777776432 2 22 77888863
Q ss_pred ---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhh
Q 016800 208 ---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVS 277 (382)
Q Consensus 208 ---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~ 277 (382)
.+.+++++.++...++...+.+.++.+++++++.|++.++||+|.+.+.++.+...+ ++.||.+.+++++
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 899999999999999999888889999999999999999999999999988766533 6678888877654
No 94
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=1.3e-19 Score=161.24 Aligned_cols=191 Identities=21% Similarity=0.247 Sum_probs=136.2
Q ss_pred CCCcccCcHHHHHHHHHHHH----------c-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceEEeecC
Q 016800 59 QVKDVAHQEEVVRVLTNTLE----------T-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNAS 122 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~----------~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~-~~~~~~~~~~~ 122 (382)
.+++++|.+.+++.+..... . +..+|++|+||||||||++|+.+++.+...+. ....+++++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 35689999999877764421 1 13456999999999999999999998743322 22345555554
Q ss_pred CCcchH--HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHHHhcCCceEEEEee
Q 016800 123 DDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 123 ~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
+..+.. .....+....... ...||+|||+|.+. .+.++.|++.+++.....++|+++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-------------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-------------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-------------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 321110 0011112211111 23599999999975 456788999999887777777776
Q ss_pred cCc-----cccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----------cCCCHHHHHHH
Q 016800 193 NYI-----SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI----------SQGDLRRAITY 256 (382)
Q Consensus 193 ~~~-----~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----------s~gdlr~a~~~ 256 (382)
... ..+.+.+++|+. .+.|++++.+++.+++++.++..+..++++++..+++. +.||.|.+.|.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 432 236789999995 79999999999999999999998888999998888543 36999999999
Q ss_pred HHHHHH
Q 016800 257 LQGAAR 262 (382)
Q Consensus 257 l~~~~~ 262 (382)
++.+..
T Consensus 231 ~e~a~~ 236 (261)
T TIGR02881 231 IEKAIR 236 (261)
T ss_pred HHHHHH
Confidence 998664
No 95
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.83 E-value=3e-19 Score=170.61 Aligned_cols=211 Identities=22% Similarity=0.358 Sum_probs=139.2
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcC---CC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA---NC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~---~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
....||++||+|.+.+|+..|++.++.+..|++.. .. ..+||+||+||||||+++.+++++. ..+.++.
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg------~~v~Ew~ 77 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG------FEVQEWI 77 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC------CeeEEec
Confidence 46789999999999999999999999999999763 22 2289999999999999999999983 3344432
Q ss_pred cCCC-----------cc----hHHHHHHHHHHHHhhhcCCCC-----CCCCCCCCcEEEEEeCCCCCCHHHHHHHH----
Q 016800 121 ASDD-----------RG----INVVRTKIKTFAAVAVGSGQR-----RGGYPCPPYKIIILDEADSMTEDAQNALR---- 176 (382)
Q Consensus 121 ~~~~-----------~~----~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~vliiDe~d~l~~~~~~~Ll---- 176 (382)
.+.. .+ .+........|.......... .+.-...+.+||+|+|+..+.......|.
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~ 157 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALR 157 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHH
Confidence 2111 00 000011122222111110000 01111236789999999987543334444
Q ss_pred HHHHhcCC-ceEEEEee-c------Ccc--------ccchhhhc--ccceEEecCCCHHHHHHHHHHHHHHh-----CC-
Q 016800 177 RTMETYSK-VTRFFFIC-N------YIS--------RIIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNEE-----GL- 232 (382)
Q Consensus 177 ~~le~~~~-~~~~Il~~-~------~~~--------~l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~-----~~- 232 (382)
+++..... .++||++- + ... .+.+.+.. ++..|.|+|++..-+++.|.+++..+ +.
T Consensus 158 ~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 158 QYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred HHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 44444333 55555551 1 111 23455655 35589999999999999999999988 32
Q ss_pred CCC--HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 233 NLD--AEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 233 ~~~--~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
..+ .+.++.|++.+.||+|.||+.||..+.
T Consensus 238 ~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 222 346999999999999999999999887
No 96
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.83 E-value=4.8e-18 Score=160.92 Aligned_cols=233 Identities=22% Similarity=0.269 Sum_probs=158.5
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEe
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~ 119 (382)
.+....++...|.| +.++|+++.++.|...+.. +..++++|+||||+|||++++.+++.+.... ....++++
T Consensus 16 ~~~~~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~i 91 (394)
T PRK00411 16 IFKDEEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYI 91 (394)
T ss_pred eeCChhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 45677788888878 5678999888888777643 3445699999999999999999999874322 23567778
Q ss_pred ecCCCcchHH-HHHHHHHHHHhhh-cCCCCCC--------C-CCCCCcEEEEEeCCCCCC----HHHHHHHHHHHHhcCC
Q 016800 120 NASDDRGINV-VRTKIKTFAAVAV-GSGQRRG--------G-YPCPPYKIIILDEADSMT----EDAQNALRRTMETYSK 184 (382)
Q Consensus 120 ~~~~~~~~~~-~~~~l~~~~~~~~-~~~~~~~--------~-~~~~~~~vliiDe~d~l~----~~~~~~Ll~~le~~~~ 184 (382)
++........ +......+..... ..+.... . ...+.+.||+|||+|.+. .+....|++.++..+.
T Consensus 92 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~ 171 (394)
T PRK00411 92 NCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPG 171 (394)
T ss_pred ECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCC
Confidence 8765433222 1222221111000 0000000 0 011245799999999986 3344555555554433
Q ss_pred -ceEEEEeecCcc---ccchhhhcccc--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhc---CCCHHHH
Q 016800 185 -VTRFFFICNYIS---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSIS---QGDLRRA 253 (382)
Q Consensus 185 -~~~~Il~~~~~~---~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~s---~gdlr~a 253 (382)
++.+|++++... .+.+.+++|+. .+.|+|++.+++.+++..+++.. ...+++++++.+++.+ .||+|.+
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a 251 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVA 251 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHH
Confidence 566888887653 46677888874 78999999999999999988653 2357999999998887 8999999
Q ss_pred HHHHHHHHHhc----CCCCChhhHhhhhCCC
Q 016800 254 ITYLQGAARLF----GSSITSKDLISVSGVI 280 (382)
Q Consensus 254 ~~~l~~~~~~~----~~~It~~~v~~~~~~~ 280 (382)
++++..++..+ ...|+.++|.++....
T Consensus 252 ~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 252 IDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99998776554 3569999998887644
No 97
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.83 E-value=1.2e-18 Score=171.28 Aligned_cols=231 Identities=22% Similarity=0.306 Sum_probs=163.4
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeecCCC
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASDD 124 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~~~ 124 (382)
.|..+.+||.+|++++|++..++.+...+.....++++|+||+|||||++|+.+.+....... ....++.+++...
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 567788999999999999999998888887777778999999999999999999876532111 1345677776542
Q ss_pred cc-hHHHHHHH-------------HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------
Q 016800 125 RG-INVVRTKI-------------KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------- 183 (382)
Q Consensus 125 ~~-~~~~~~~l-------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------- 183 (382)
.. ...+...+ ..+...... ....+........+++|||++.|+...++.|++.+++..
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~-~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~ 300 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVP-EPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSY 300 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCC-chhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecce
Confidence 11 11110000 000000000 000111111234599999999999999999999998632
Q ss_pred -------------------CceEEEEe---ecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 016800 184 -------------------KVTRFFFI---CNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241 (382)
Q Consensus 184 -------------------~~~~~Il~---~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (382)
..+.|+++ ++.+..+.+++++||..+.|+|++.+++..++.+.+.+.++.+++++++.
T Consensus 301 ~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~ 380 (615)
T TIGR02903 301 YDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEEL 380 (615)
T ss_pred eccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 11223433 34566788999999999999999999999999999998888899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhc------------CCCCChhhHhhhhCCCC
Q 016800 242 LSSISQGDLRRAITYLQGAARLF------------GSSITSKDLISVSGVIP 281 (382)
Q Consensus 242 l~~~s~gdlr~a~~~l~~~~~~~------------~~~It~~~v~~~~~~~~ 281 (382)
|++.+. +.|++++.|+.+..+. ...|+.++|+++++...
T Consensus 381 L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 381 IARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 888765 6799999997764331 12577888888876553
No 98
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.83 E-value=2e-18 Score=145.05 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=142.2
Q ss_pred HHHHHHHHHcCCCCc-EEEeCCCC-CCHHHHHHHHHHHhcCCC---CCCCceEEeecC-------CCcchHHHHHHHHHH
Q 016800 70 VRVLTNTLETANCPH-MLFYGPPG-TGKTTTALAIAHQLFGPE---LYKSRVLELNAS-------DDRGINVVRTKIKTF 137 (382)
Q Consensus 70 ~~~l~~~l~~~~~~~-lll~Gp~G-~GKt~la~~la~~l~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~l~~~ 137 (382)
+..|.+.++.+++.| +||.|..+ +||..++..+++.++|.+ ..+.++..+.+. ...+++++|+....+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 457888999999999 99999998 999999999999988753 223455555433 245788999866655
Q ss_pred HHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHH
Q 016800 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~ 217 (382)
...+..+ ++||++|+++|.|+.+++|+|++++|+||.++.||++|+.+..+++||+|||+.+.|+.+...
T Consensus 82 ~~~p~~g----------~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~ 151 (263)
T PRK06581 82 SKTSAIS----------GYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILH 151 (263)
T ss_pred hhCcccC----------CcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHH
Confidence 5443322 889999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
...++....+. ...+...++.|.+...-|....+...+.+-
T Consensus 152 ~~~e~~~~~~~---p~~~~~~l~~i~~~~~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 152 AYNELYSQFIQ---PIADNKTLDFINRFTTKDRELWLDFIDNLL 192 (263)
T ss_pred HHHHHHHHhcc---cccccHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88887754332 223556688888877777766666665543
No 99
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.83 E-value=1.6e-18 Score=159.76 Aligned_cols=210 Identities=22% Similarity=0.324 Sum_probs=142.4
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHH-----cCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEE
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-----TANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~-----~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~ 118 (382)
....+|.+||+|.+.+++..|++-+..+..|++ ....++ +||+||+||||||+++.+++++. ..+.+
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg------~~~~E 140 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG------YQLIE 140 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC------ceeee
Confidence 567899999999999999999999999999998 555665 89999999999999999999983 33333
Q ss_pred eecC-----------CCcc----hHHHHHHHHHHHHhhh--cCCCCCCCCCCCCcEEEEEeCCCCCCHH-H----HHHHH
Q 016800 119 LNAS-----------DDRG----INVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSMTED-A----QNALR 176 (382)
Q Consensus 119 ~~~~-----------~~~~----~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~vliiDe~d~l~~~-~----~~~Ll 176 (382)
+..+ +..+ ...--..++.|..... +.-...+.-..+.+++|+|||+...... . ++.|.
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~ 220 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLR 220 (634)
T ss_pred ecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHH
Confidence 3311 0000 1111122333333221 1111111112336679999999877432 2 44555
Q ss_pred HHHHhcCCceEEEEee------cCccc-cchh--hhcccceEEecCCCHHHHHHHHHHHHHHhCCCCC------HHHHHH
Q 016800 177 RTMETYSKVTRFFFIC------NYISR-IIEP--LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD------AEALST 241 (382)
Q Consensus 177 ~~le~~~~~~~~Il~~------~~~~~-l~~~--l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~ 241 (382)
.+...+...++||++- |+..+ ..+. ..-|...|.|+|..+.-+++.|..+|..++...+ ...++.
T Consensus 221 ~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~ 300 (634)
T KOG1970|consen 221 LYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVEL 300 (634)
T ss_pred HHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHH
Confidence 4444444444444442 11111 2233 3345669999999999999999999999887766 677899
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 016800 242 LSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 242 l~~~s~gdlr~a~~~l~~~~ 261 (382)
++..++||+|.|++.||..+
T Consensus 301 i~~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 301 ICQGSGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHhcCccHHHHHhHhhhhc
Confidence 99999999999999999764
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=99.81 E-value=5.3e-18 Score=147.90 Aligned_cols=204 Identities=15% Similarity=0.169 Sum_probs=144.1
Q ss_pred hcCC-CCCCccc-Cc-HHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch
Q 016800 54 KYRP-KQVKDVA-HQ-EEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (382)
Q Consensus 54 k~~p-~~~~~~~-g~-~~~~~~l~~~l~~~---~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (382)
.+.| .+|++++ |. ..+...+.++.... ..+.++|+||+|+||||+++++++++... ...+++++..+..
T Consensus 11 ~~~~~~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~~~-- 85 (234)
T PRK05642 11 RLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAELL-- 85 (234)
T ss_pred CCCCcccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHHHH--
Confidence 3344 4788887 33 33344455554321 12348999999999999999999887432 2345555553321
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC-ceEEEEeecC-cc---ccch
Q 016800 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNY-IS---RIIE 200 (382)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~-~~~~Il~~~~-~~---~l~~ 200 (382)
......+..+. +..+++|||++.+. +..+..|+.+++.... ...+|++++. +. ...+
T Consensus 86 ~~~~~~~~~~~----------------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~ 149 (234)
T PRK05642 86 DRGPELLDNLE----------------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLP 149 (234)
T ss_pred hhhHHHHHhhh----------------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCc
Confidence 11111111111 33599999999874 3556779999876543 4556777654 22 2469
Q ss_pred hhhccc---ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHh
Q 016800 201 PLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLI 274 (382)
Q Consensus 201 ~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~ 274 (382)
.++||+ .++.+++|+.++...+++..+...++.+++++++.|++.++||+|.+.+.++.+...+ +..||...++
T Consensus 150 ~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~ 229 (234)
T PRK05642 150 DLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLK 229 (234)
T ss_pred cHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHH
Confidence 999999 6899999999999999998888889999999999999999999999999998886543 4789988888
Q ss_pred hhhC
Q 016800 275 SVSG 278 (382)
Q Consensus 275 ~~~~ 278 (382)
++++
T Consensus 230 ~~L~ 233 (234)
T PRK05642 230 ETLG 233 (234)
T ss_pred HHhc
Confidence 7653
No 101
>PRK06620 hypothetical protein; Validated
Probab=99.81 E-value=4.4e-18 Score=145.89 Aligned_cols=190 Identities=12% Similarity=0.131 Sum_probs=130.2
Q ss_pred hhhhhcCCCCCCccc-C--cHHHHHHHHHHHHcC-CC---CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 50 PWVEKYRPKQVKDVA-H--QEEVVRVLTNTLETA-NC---PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~-g--~~~~~~~l~~~l~~~-~~---~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++..+| +|++++ | +..+...+..+.+.. .. +.++||||+|+||||+++++++... ..+ +...
T Consensus 8 ~~~~~~---tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~------~~~--~~~~ 76 (214)
T PRK06620 8 TTSSKY---HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN------AYI--IKDI 76 (214)
T ss_pred CCCCCC---CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC------CEE--cchh
Confidence 444444 556555 3 456777777777532 22 3499999999999999999887641 111 1110
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC-cc--ccc
Q 016800 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY-IS--RII 199 (382)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~-~~--~l~ 199 (382)
.. .. .+. . ...+++|||+|.+.....-.++..+.+.. ..++++++. +. .+
T Consensus 77 ~~-----~~----~~~-----~----------~~d~lliDdi~~~~~~~lf~l~N~~~e~g--~~ilits~~~p~~l~l- 129 (214)
T PRK06620 77 FF-----NE----EIL-----E----------KYNAFIIEDIENWQEPALLHIFNIINEKQ--KYLLLTSSDKSRNFTL- 129 (214)
T ss_pred hh-----ch----hHH-----h----------cCCEEEEeccccchHHHHHHHHHHHHhcC--CEEEEEcCCCccccch-
Confidence 00 00 010 0 33599999999774332223333333322 245555542 22 24
Q ss_pred hhhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhH
Q 016800 200 EPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDL 273 (382)
Q Consensus 200 ~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v 273 (382)
+.++||+. ++.+++|+.+++..++++.+...|+.++++++++|++.++||+|.+++.++.+...+ +..||.+.+
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~ 209 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLV 209 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 89999998 999999999999999999999889999999999999999999999999999875432 466888887
Q ss_pred hhhh
Q 016800 274 ISVS 277 (382)
Q Consensus 274 ~~~~ 277 (382)
++++
T Consensus 210 ~~~l 213 (214)
T PRK06620 210 KEVL 213 (214)
T ss_pred HHHh
Confidence 7654
No 102
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=4.4e-18 Score=152.27 Aligned_cols=190 Identities=24% Similarity=0.222 Sum_probs=134.3
Q ss_pred CcccCcHHHHHHHHHHHH----------c-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCceEEeecCCC
Q 016800 61 KDVAHQEEVVRVLTNTLE----------T-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDD 124 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~----------~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~-~~~~~~~~~~~~ 124 (382)
++++|.+.+++.+..++. . ....|++|+||||||||++|+++++.+...+.. ...+++++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 479999998887765531 1 123359999999999999999999987543321 223566654321
Q ss_pred cchHH--HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 125 RGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 125 ~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.+... ............ ...|++|||++.+ +.+.++.|+..|++....+++|++++
T Consensus 103 ~~~~~g~~~~~~~~~l~~a-------------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~ 169 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA-------------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGY 169 (287)
T ss_pred HHHHhccchHHHHHHHHHc-------------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 11000 000011111111 3359999999986 45678899999998888888888765
Q ss_pred Cc--c---ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHH
Q 016800 194 YI--S---RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQG 259 (382)
Q Consensus 194 ~~--~---~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~gdlr~a~~~l~~ 259 (382)
.. . ...+.+++|+. .+.|++++.+++.+++...+++.+..+++++...+... ..||.|.+.+.++.
T Consensus 170 ~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 170 KDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred cHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 32 1 23489999998 89999999999999999999999998998877666653 24899999999988
Q ss_pred HHHh
Q 016800 260 AARL 263 (382)
Q Consensus 260 ~~~~ 263 (382)
+...
T Consensus 250 ~~~~ 253 (287)
T CHL00181 250 ARMR 253 (287)
T ss_pred HHHH
Confidence 7754
No 103
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.9e-16 Score=145.58 Aligned_cols=283 Identities=18% Similarity=0.181 Sum_probs=216.7
Q ss_pred HHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCC
Q 016800 73 LTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (382)
Q Consensus 73 l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (382)
+...+..+ ..|-+++||+.-.-....+..+.+... .+........+...+. ... ..+......+..+
T Consensus 6 ~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~-~~~~~~~~~~~~~~~~-~~~---~~~~~~~s~~lF~------- 73 (334)
T COG1466 6 LAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL-ADGFDENYSFFDDSEL-DWA---DLLSELESPSLFG------- 73 (334)
T ss_pred HHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHh-ccchhhHHhhcccccC-CHH---HHHHHhhcccccc-------
Confidence 34445555 344499999998888888888888775 2222222222222211 222 2232222222222
Q ss_pred CCCCcEEEEEeCCCCCC-HHHHHHHHHHHHhcC-CceEEEEeecCccc---cchhhhcc--cceEEecCCCHHHHHHHHH
Q 016800 152 PCPPYKIIILDEADSMT-EDAQNALRRTMETYS-KVTRFFFICNYISR---IIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 152 ~~~~~~vliiDe~d~l~-~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~---l~~~l~sr--~~~i~~~~~~~~~~~~~l~ 224 (382)
+.++++|...+... .+....+......+| ..+.+++.++..++ ..+.+.+- +..+.+.+++.+++.+|+.
T Consensus 74 ---~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~ 150 (334)
T COG1466 74 ---EKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIK 150 (334)
T ss_pred ---CCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHH
Confidence 56899999988876 555666667766666 55555555544332 33344333 5589999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 016800 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKE 303 (382)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (382)
.++++.|+.+++++++.++...+||++.+.+.+++++.+. ++.||.++|..++........+++++++..++..+++..
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~ 230 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRL 230 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999998 348999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhc----------------------------------CCCCHHHHHHHHHHHHHHhhH
Q 016800 304 VNNIIAEGYPASLLLSQLFDVVVET----------------------------------EDISDEQQARICKCLAEVDKC 349 (382)
Q Consensus 304 l~~l~~~g~~~~~i~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~ 349 (382)
+++++..|++|..++..+.++++.. .+++...+.+++..+.+++..
T Consensus 231 l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~l~~l~~~d~~ 310 (334)
T COG1466 231 LRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKALRLLAQLDYQ 310 (334)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887776631 238999999999999999999
Q ss_pred hhcCC-ChHHHHHHHHHHHHHH
Q 016800 350 LVDGA-DEYLQLLDVASNVIRA 370 (382)
Q Consensus 350 l~~g~-~~~l~l~~l~~~l~~~ 370 (382)
++.|. ++...++.++++++..
T Consensus 311 ~K~~~~d~~~~l~~~l~~~~~~ 332 (334)
T COG1466 311 IKTGYGDPVWALELFLLRLLEL 332 (334)
T ss_pred HhcCCccchHHHHHHHHHHhhc
Confidence 99997 7888999999888753
No 104
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.4e-17 Score=149.92 Aligned_cols=238 Identities=21% Similarity=0.289 Sum_probs=161.5
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHH----HHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNT----LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~----l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
....+.+.|-|.. +.+++..+..+... +.++.+.++++|||||||||++++.+.+++..... ...++++||.
T Consensus 6 n~~vl~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~~~~~yINc~ 81 (366)
T COG1474 6 NKDVLLEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-NVEVVYINCL 81 (366)
T ss_pred cccccCCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-cCceEEEeee
Confidence 3444556677754 77887777666554 45566666999999999999999999999865432 2237889987
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCC--------CC-CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC---ceEEEE
Q 016800 123 DDRGINVVRTKIKTFAAVAVGSGQRRG--------GY-PCPPYKIIILDEADSMTEDAQNALRRTMETYSK---VTRFFF 190 (382)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~---~~~~Il 190 (382)
.......+-..+-......+..+.+.. .+ ..++.-||++||+|.|.....+.|+.++..+.. .+.+|+
T Consensus 82 ~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~ 161 (366)
T COG1474 82 ELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIA 161 (366)
T ss_pred eCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEE
Confidence 655544433322221111111111000 00 123677999999999977666777777664433 345677
Q ss_pred eecCc---cccchhhhcccc--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHH---hcCCCHHHHHHHHHHH
Q 016800 191 ICNYI---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSS---ISQGDLRRAITYLQGA 260 (382)
Q Consensus 191 ~~~~~---~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~---~s~gdlr~a~~~l~~~ 260 (382)
++|.. ..+.+.++|+.. .+.|+|++.+|+..+|..+++.. .-.+++++++.++. ..+||.|.|+..|..+
T Consensus 162 i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 162 VSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred EeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 77765 357788888876 68899999999999999998742 23478888887774 4478999999999998
Q ss_pred HHhc----CCCCChhhHhhhhCCCCHHHHHHH
Q 016800 261 ARLF----GSSITSKDLISVSGVIPPEVVEGL 288 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~~~~~~~~~~~~ 288 (382)
+..+ ...++.++|.++..........+.
T Consensus 242 ~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~ 273 (366)
T COG1474 242 GEIAEREGSRKVSEDHVREAQEEIERDVLEEV 273 (366)
T ss_pred HHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHH
Confidence 8776 478999999988544444333333
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.78 E-value=3.2e-17 Score=165.41 Aligned_cols=218 Identities=19% Similarity=0.226 Sum_probs=162.0
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeecCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASD 123 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~~ 123 (382)
..++.++.+|..+++++|+++.+..+...+.....++++|+||||||||++++.+++.+..... .+..++.++...
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 4588999999999999999999999999888888888999999999999999999998743221 234556665432
Q ss_pred C----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCceEEEE
Q 016800 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFF 190 (382)
Q Consensus 124 ~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~~Il 190 (382)
. .....+.+.++......... +..|++|||+|.+. .++++.|...++. ....+|.
T Consensus 249 l~a~~~~~g~~e~~l~~i~~~~~~~----------~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~Ig 316 (731)
T TIGR02639 249 LLAGTKYRGDFEERLKAVVSEIEKE----------PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIG 316 (731)
T ss_pred HhhhccccchHHHHHHHHHHHHhcc----------CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEE
Confidence 1 11223444444444322111 34699999999884 3457888888874 4566777
Q ss_pred eecCc-----cccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHH
Q 016800 191 ICNYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAIT 255 (382)
Q Consensus 191 ~~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~g------dlr~a~~ 255 (382)
+|+.. ....+++.+|++.+.+++|+.++...+|+..... .++.++++++..++..+.. -|++|+.
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 77752 3468999999999999999999999999976654 3567999999999998843 3889999
Q ss_pred HHHHHHHhc--------CCCCChhhHhhhh
Q 016800 256 YLQGAARLF--------GSSITSKDLISVS 277 (382)
Q Consensus 256 ~l~~~~~~~--------~~~It~~~v~~~~ 277 (382)
+++.++... ...++.+++..++
T Consensus 397 lld~a~a~~~~~~~~~~~~~v~~~~i~~~i 426 (731)
T TIGR02639 397 VIDEAGASFRLRPKAKKKANVSVKDIENVV 426 (731)
T ss_pred HHHHhhhhhhcCcccccccccCHHHHHHHH
Confidence 998876532 1236766666655
No 106
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.78 E-value=1.3e-16 Score=151.44 Aligned_cols=208 Identities=12% Similarity=0.173 Sum_probs=147.1
Q ss_pred CCCCCccc-Cc--HHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 57 PKQVKDVA-HQ--EEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 57 p~~~~~~~-g~--~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.+|+.++ |. ..+......+..... .+.++|||++|+||||+++++++++.... .+..++++++.+. ...+.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~f--~~~~~ 187 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDEF--ARKAV 187 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHH--HHHHH
Confidence 56888887 32 334455555555422 23399999999999999999999774211 1245566655431 11111
Q ss_pred HHH-------HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC-ceEEEEeecCcc----c
Q 016800 132 TKI-------KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYIS----R 197 (382)
Q Consensus 132 ~~l-------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~-~~~~Il~~~~~~----~ 197 (382)
..+ ..+... + ....+++|||++.+. ...++.|+.++..... ...+|++++.+. .
T Consensus 188 ~~l~~~~~~~~~~~~~----------~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~ 255 (450)
T PRK14087 188 DILQKTHKEIEQFKNE----------I--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNG 255 (450)
T ss_pred HHHHHhhhHHHHHHHH----------h--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhh
Confidence 111 111110 0 145699999999986 5678888888876433 235777776542 3
Q ss_pred cchhhhcccc---eEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--C---CC
Q 016800 198 IIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALSTLSSISQGDLRRAITYLQGAARLF--G---SS 267 (382)
Q Consensus 198 l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~--~---~~ 267 (382)
+.+.++||+. .+.+++|+.++..++|++.++..|. .+++++++.|++.++||+|.+.+.+..+..++ . ..
T Consensus 256 l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~ 335 (450)
T PRK14087 256 FDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKI 335 (450)
T ss_pred ccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCC
Confidence 5689999986 8999999999999999999988775 69999999999999999999999998886444 2 57
Q ss_pred CChhhHhhhhCC
Q 016800 268 ITSKDLISVSGV 279 (382)
Q Consensus 268 It~~~v~~~~~~ 279 (382)
||.+.+++++..
T Consensus 336 it~~~v~~~l~~ 347 (450)
T PRK14087 336 ITIEIVSDLFRD 347 (450)
T ss_pred CCHHHHHHHHhh
Confidence 999999888753
No 107
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.3e-17 Score=144.09 Aligned_cols=198 Identities=22% Similarity=0.297 Sum_probs=140.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC------------CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA------------NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+++++-|-++.++.++..++-. .+|. +|+|||||||||.+|+++|++. +..|+.+.++..
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvgSEl 221 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVGSEL 221 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CceEEEeccHHH
Confidence 37789989999999999887532 2233 9999999999999999999987 567777776542
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH-----hc
Q 016800 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME-----TY 182 (382)
Q Consensus 125 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le-----~~ 182 (382)
.+..-+++.+ ..+... .+.||||||+|.+. .+.|--++++|. ++
T Consensus 222 VqKYiGEGaRlVRelF----~lArek----------aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 222 VQKYIGEGARLVRELF----ELAREK----------APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HHHHhccchHHHHHHH----HHHhhc----------CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 1222333332 222211 56799999999883 356777777775 34
Q ss_pred CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCHHHH-HHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRA-ITYL 257 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~gdlr~a-~~~l 257 (382)
..++.+|++||.++-++|+|.+ |+. .|+|+.|+.+....+++-...+..+ .+ -.++.|+..++|--..- ...+
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHHhcCCCchHHHHHHH
Confidence 6789999999999999999998 555 8999999999999999887776553 33 33777888776543332 2344
Q ss_pred HHHHHhc----CCCCChhhHhhhh
Q 016800 258 QGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 258 ~~~~~~~----~~~It~~~v~~~~ 277 (382)
..+..++ ...+|.++..+++
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av 389 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAV 389 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHH
Confidence 4444444 3567777665544
No 108
>PRK09087 hypothetical protein; Validated
Probab=99.77 E-value=1.8e-17 Score=143.40 Aligned_cols=188 Identities=17% Similarity=0.190 Sum_probs=135.7
Q ss_pred CCCcccC---cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 59 QVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 59 ~~~~~~g---~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
+|++++. +..+...+.++. ....+.++|+||+|+||||+++++++.. ....++..+ ...+ .+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~--------~~~~i~~~~-~~~~----~~~ 84 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS--------DALLIHPNE-IGSD----AAN 84 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc--------CCEEecHHH-cchH----HHH
Confidence 7888884 344556555544 2233449999999999999999998764 112233221 1111 111
Q ss_pred HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc----ccchhhhccc---c
Q 016800 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASRC---A 207 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~----~l~~~l~sr~---~ 207 (382)
.. ...+|+|||++.+. ..+..|+.++..... ...+|++++... ...+.++||+ .
T Consensus 85 ~~-----------------~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl 146 (226)
T PRK09087 85 AA-----------------AEGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT 146 (226)
T ss_pred hh-----------------hcCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCc
Confidence 10 12489999999875 235678888865443 455777776432 2468899999 6
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhhC
Q 016800 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~~ 278 (382)
++++++|+.++...++++.++..++.++++++++|++.++|+++.++..+..+..++ +..||...+++++.
T Consensus 147 ~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 147 VVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998777665443 67899888887764
No 109
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=4e-17 Score=146.31 Aligned_cols=190 Identities=22% Similarity=0.201 Sum_probs=135.5
Q ss_pred CcccCcHHHHHHHHHHHH----------cC-----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCceEEeecCCC
Q 016800 61 KDVAHQEEVVRVLTNTLE----------TA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDD 124 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~----------~~-----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~-~~~~~~~~~~~~ 124 (382)
++++|.+++++.+..+.. .| ...|++|+||||||||++|+++++.+...+.. ...++++++++.
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 368999888877755431 11 11259999999999999999999988543322 224666665332
Q ss_pred cch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 125 RGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 125 ~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.+. ......+....... ...+++|||++.+ +.+.++.|++.|++....+++|++++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-------------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~ 168 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGY 168 (284)
T ss_pred hHhhcccchHHHHHHHHHc-------------cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 110 00000111111111 2359999999987 35568899999998887887777765
Q ss_pred Cc--c---ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHH
Q 016800 194 YI--S---RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQG 259 (382)
Q Consensus 194 ~~--~---~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~gdlr~a~~~l~~ 259 (382)
.. + .+.+.+++|+. .+.|++++.+++..++...+++.+..+++++...+... ..||.|.+.+.++.
T Consensus 169 ~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 169 KDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred cHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 32 2 24689999997 89999999999999999999998888999998888765 36999999999998
Q ss_pred HHHh
Q 016800 260 AARL 263 (382)
Q Consensus 260 ~~~~ 263 (382)
+...
T Consensus 249 ~~~~ 252 (284)
T TIGR02880 249 ARLR 252 (284)
T ss_pred HHHH
Confidence 8754
No 110
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.76 E-value=7.7e-17 Score=140.54 Aligned_cols=181 Identities=16% Similarity=0.163 Sum_probs=152.6
Q ss_pred eEEEEee--cCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 016800 186 TRFFFIC--NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE------GLNLDAEALSTLSSISQGDLRRAITYL 257 (382)
Q Consensus 186 ~~~Il~~--~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~s~gdlr~a~~~l 257 (382)
..+|-+| |+.+.+.++|+|||+++.|++++.+++..+|++.+..+ .+.+++++++.|++.++||.|.++|.|
T Consensus 9 i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~L 88 (300)
T PRK14700 9 IILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNLL 88 (300)
T ss_pred EEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444444 56678999999999999999999999999999988752 367899999999999999999999999
Q ss_pred HHHHHhc--CC--CCChhhHhhhh----------CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 016800 258 QGAARLF--GS--SITSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFD 323 (382)
Q Consensus 258 ~~~~~~~--~~--~It~~~v~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~ 323 (382)
+.+.... .. .||.+.+++++ +..+++.++.++++++..|.++|+-|+.+|+..|++|..|.++|..
T Consensus 89 E~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii 168 (300)
T PRK14700 89 ERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLC 168 (300)
T ss_pred HHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9866532 12 39999998877 3467889999999999999999999999999999999999999987
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-HHHHHHHHHHHH
Q 016800 324 VVVETEDISDEQQARICKCLAEVDKCLVDGADE-YLQLLDVASNVI 368 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~l~l~~l~~~l~ 368 (382)
...+ +++.+....+....+.++.....|.++ ++.|...++-++
T Consensus 169 ~AsE--DIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA 212 (300)
T PRK14700 169 IASE--DIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLA 212 (300)
T ss_pred HHHh--hccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 6665 888888777788888888888899855 677777766665
No 111
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=7.7e-16 Score=147.95 Aligned_cols=214 Identities=18% Similarity=0.184 Sum_probs=148.2
Q ss_pred hhhcCC-CCCCcccC-c--HHHHHHHHHHHHc-CCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 52 VEKYRP-KQVKDVAH-Q--EEVVRVLTNTLET-ANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 52 ~~k~~p-~~~~~~~g-~--~~~~~~l~~~l~~-~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.-.+.| .+|++|+. . .........++.. +...+ ++|||++|+|||||++++++++... .....++++++.+..
T Consensus 278 ~a~L~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yitaeef~ 356 (617)
T PRK14086 278 TARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSSEEFT 356 (617)
T ss_pred cCCCCCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHH
Confidence 333444 47888873 2 2233344444443 22223 9999999999999999999987421 112455666654321
Q ss_pred c--hHHHHH-HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCC-ceEEEEeecCc----
Q 016800 126 G--INVVRT-KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYI---- 195 (382)
Q Consensus 126 ~--~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~-~~~~Il~~~~~---- 195 (382)
. ...++. .+..|... +. ...+|+|||++.+.. ..+..|+.+++.... ...+|++++..
T Consensus 357 ~el~~al~~~~~~~f~~~----------y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 357 NEFINSIRDGKGDSFRRR----------YR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred HHHHHHHHhccHHHHHHH----------hh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 0 011111 11111110 00 456999999999843 446788888886544 34577777754
Q ss_pred cccchhhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCC
Q 016800 196 SRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSIT 269 (382)
Q Consensus 196 ~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It 269 (382)
..+.+.|+||+. ++.+.+|+.+....+|++.+...++.++++++++|+....+|+|.+...|..+..++ +..||
T Consensus 425 ~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~it 504 (617)
T PRK14086 425 VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVD 504 (617)
T ss_pred hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 246788999986 899999999999999999999999999999999999999999999999888876554 57799
Q ss_pred hhhHhhhhC
Q 016800 270 SKDLISVSG 278 (382)
Q Consensus 270 ~~~v~~~~~ 278 (382)
.+.+++++.
T Consensus 505 l~la~~vL~ 513 (617)
T PRK14086 505 LGLTEIVLR 513 (617)
T ss_pred HHHHHHHHH
Confidence 888877664
No 112
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.75 E-value=6.8e-16 Score=147.92 Aligned_cols=206 Identities=16% Similarity=0.190 Sum_probs=145.3
Q ss_pred CCCccc-C--cHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH
Q 016800 59 QVKDVA-H--QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 59 ~~~~~~-g--~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+|++++ | +..+......+..... ...++||||+|+||||+++++++++.... ....++++++.+. ...+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~~~--~~~~~~~ 196 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSEKF--TNDFVNA 196 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHHHH--HHHHHHH
Confidence 777766 3 3445566666665432 23399999999999999999999985332 1245566665432 1111111
Q ss_pred HH-----HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCC-ceEEEEeecCc-c---ccchh
Q 016800 134 IK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYI-S---RIIEP 201 (382)
Q Consensus 134 l~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~-~~~~Il~~~~~-~---~l~~~ 201 (382)
+. .+... .. ...+|+|||++.+.. ..+..|+.+++.... ...+|++++.+ . .+.+.
T Consensus 197 ~~~~~~~~~~~~-~~-----------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 197 LRNNTMEEFKEK-YR-----------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHcCcHHHHHHH-Hh-----------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 11 11110 00 346999999999853 356778887765432 23466666653 2 26688
Q ss_pred hhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhh
Q 016800 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLIS 275 (382)
Q Consensus 202 l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~ 275 (382)
++||+. .+.|++|+.++...+|+..+...++.+++++++.|++.++||+|.+...|..+..++ +..||.+.+++
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~ 344 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKE 344 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 999995 899999999999999999999989999999999999999999999888888776554 67799988888
Q ss_pred hhCC
Q 016800 276 VSGV 279 (382)
Q Consensus 276 ~~~~ 279 (382)
++..
T Consensus 345 ~l~~ 348 (450)
T PRK00149 345 ALKD 348 (450)
T ss_pred HHHH
Confidence 7753
No 113
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.75 E-value=1.1e-16 Score=162.64 Aligned_cols=206 Identities=17% Similarity=0.202 Sum_probs=153.0
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD 123 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~ 123 (382)
..+++++.||..+++++|+++.+..+...+...+.++++|+||||||||++++.+++.+.... ..+..++.++...
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 357888899999999999999999999888888888999999999999999999999874321 2233445444432
Q ss_pred C----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEe
Q 016800 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 124 ~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
. .....+.+.++.......... ...|++|||+|.+.. ++.|.|...++. +...+|.+
T Consensus 254 l~ag~~~~ge~e~~lk~ii~e~~~~~---------~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Iga 322 (852)
T TIGR03345 254 LQAGASVKGEFENRLKSVIDEVKASP---------QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAA 322 (852)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcC---------CCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEe
Confidence 1 123333344444333221111 457999999999953 344568788775 45667777
Q ss_pred ecCc-----cccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHHH
Q 016800 192 CNYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITY 256 (382)
Q Consensus 192 ~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~g------dlr~a~~~ 256 (382)
|+.. ..+.++|.+||+.|.+++|+.++...+|+.+... .++.++++++..++..+.+ -|.+|+.+
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdl 402 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSL 402 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHH
Confidence 7653 3478999999999999999999999997665543 4678999999999998853 48889999
Q ss_pred HHHHHHhc
Q 016800 257 LQGAARLF 264 (382)
Q Consensus 257 l~~~~~~~ 264 (382)
++.++...
T Consensus 403 ldea~a~~ 410 (852)
T TIGR03345 403 LDTACARV 410 (852)
T ss_pred HHHHHHHH
Confidence 99887543
No 114
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.75 E-value=1.4e-15 Score=144.45 Aligned_cols=207 Identities=15% Similarity=0.180 Sum_probs=144.1
Q ss_pred CCCCccc-Cc--HHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH
Q 016800 58 KQVKDVA-HQ--EEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
.+|++++ |. ..+......+..+.. ..+++||||+|+||||+++++++++.... ....+.++++.+. ...+...
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f--~~~~~~~ 178 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKF--LNDLVDS 178 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHH--HHHHHHH
Confidence 3788877 43 333345555554332 23499999999999999999999874322 1235666665431 1111111
Q ss_pred H-----HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC-ceEEEEeecC-cc---ccchh
Q 016800 134 I-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNY-IS---RIIEP 201 (382)
Q Consensus 134 l-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~-~~~~Il~~~~-~~---~l~~~ 201 (382)
+ ..|..... ....+++|||++.+. ...+..|+.++..... ...+|++++. +. .+.+.
T Consensus 179 ~~~~~~~~f~~~~~-----------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 179 MKEGKLNEFREKYR-----------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred HhcccHHHHHHHHH-----------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 1 11111100 035699999999874 3346677777765432 2356666653 32 36688
Q ss_pred hhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhh
Q 016800 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLIS 275 (382)
Q Consensus 202 l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~ 275 (382)
++||+. .+.+++|+.++...++++.++..++.+++++++.|++.+.||+|.+...+..+..++ +..||.+.+.+
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~ 327 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAIL 327 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999987 899999999999999999999999999999999999999999999999888876554 67899988877
Q ss_pred hhC
Q 016800 276 VSG 278 (382)
Q Consensus 276 ~~~ 278 (382)
++.
T Consensus 328 ~L~ 330 (440)
T PRK14088 328 LLK 330 (440)
T ss_pred HHH
Confidence 664
No 115
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.74 E-value=1.5e-16 Score=150.59 Aligned_cols=207 Identities=15% Similarity=0.225 Sum_probs=146.6
Q ss_pred cCC-CCCCccc-Cc--HHHHHHHHHHHHc-----CC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 55 YRP-KQVKDVA-HQ--EEVVRVLTNTLET-----AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 55 ~~p-~~~~~~~-g~--~~~~~~l~~~l~~-----~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
+.| .+|++++ |. ..+......+... +. ..+++||||+|+||||+++++++.+... ...++++++.+.
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f 180 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELF 180 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHH
Confidence 445 4888887 43 3233455555432 11 2349999999999999999999998543 245555554321
Q ss_pred cchHHHHHHHH-----HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhc-CCceEEEEeecCc-
Q 016800 125 RGINVVRTKIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETY-SKVTRFFFICNYI- 195 (382)
Q Consensus 125 ~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~-~~~~~~Il~~~~~- 195 (382)
...+...+. .+... + ....+++|||++.+.. ..++.|+.++... .....+|++++.+
T Consensus 181 --~~~~~~~l~~~~~~~f~~~----------~--~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p 246 (445)
T PRK12422 181 --TEHLVSAIRSGEMQRFRQF----------Y--RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP 246 (445)
T ss_pred --HHHHHHHHhcchHHHHHHH----------c--ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH
Confidence 111111111 11100 0 1456999999999853 4577888877643 2334677877653
Q ss_pred ---cccchhhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH---Hhc--
Q 016800 196 ---SRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA---RLF-- 264 (382)
Q Consensus 196 ---~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~---~~~-- 264 (382)
..+.+.++||+. .+.+++|+.++...+|++.++..++.+++++++.|+....||+|.+.+.+..++ .++
T Consensus 247 ~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~ 326 (445)
T PRK12422 247 QDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKL 326 (445)
T ss_pred HHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 346789999994 899999999999999999999999999999999999999999999999999885 332
Q ss_pred -CCCCChhhHhhhhC
Q 016800 265 -GSSITSKDLISVSG 278 (382)
Q Consensus 265 -~~~It~~~v~~~~~ 278 (382)
+..||.+.+++++.
T Consensus 327 ~~~~i~~~~~~~~l~ 341 (445)
T PRK12422 327 SHQLLYVDDIKALLH 341 (445)
T ss_pred hCCCCCHHHHHHHHH
Confidence 56799998887764
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.73 E-value=7.4e-16 Score=145.95 Aligned_cols=206 Identities=16% Similarity=0.196 Sum_probs=142.3
Q ss_pred CCCCccc-Cc--HHHHHHHHHHHHcCC-C-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 58 KQVKDVA-HQ--EEVVRVLTNTLETAN-C-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~~~-~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
.+|++++ |. ..+......+..... . ..++||||+|+|||++++++++++.... ....++++++.+.. ..+..
T Consensus 107 ~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~--~~~~~ 183 (405)
T TIGR00362 107 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFT--NDFVN 183 (405)
T ss_pred CcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHH--HHHHH
Confidence 3677754 53 223445555555422 2 2389999999999999999999885321 12456666654311 11111
Q ss_pred HH-----HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcC-CceEEEEeecCc----cccch
Q 016800 133 KI-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI----SRIIE 200 (382)
Q Consensus 133 ~l-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~-~~~~~Il~~~~~----~~l~~ 200 (382)
.+ ..+... .. ...+|+|||++.+.. ..+..|+.+++... ....+|++++.. ..+.+
T Consensus 184 ~~~~~~~~~~~~~-~~-----------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~ 251 (405)
T TIGR00362 184 ALRNNKMEEFKEK-YR-----------SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEE 251 (405)
T ss_pred HHHcCCHHHHHHH-HH-----------hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhh
Confidence 11 111110 00 346999999998853 35677888877542 234577777643 23568
Q ss_pred hhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHh
Q 016800 201 PLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLI 274 (382)
Q Consensus 201 ~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~ 274 (382)
.++||+. .+.|++|+.++...+|+..++..++.+++++++.|++...||+|.+...+..+..++ +..||.+.++
T Consensus 252 ~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~ 331 (405)
T TIGR00362 252 RLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAK 331 (405)
T ss_pred hhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 8999985 799999999999999999999999999999999999999999999887777766554 6789988887
Q ss_pred hhhC
Q 016800 275 SVSG 278 (382)
Q Consensus 275 ~~~~ 278 (382)
+++.
T Consensus 332 ~~L~ 335 (405)
T TIGR00362 332 EALK 335 (405)
T ss_pred HHHH
Confidence 7664
No 117
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.72 E-value=4.1e-16 Score=136.81 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=103.6
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec------------CccccchhhhcccceEEecCCCHHHHHHHH
Q 016800 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 156 ~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
+.|+||||+|.|.-++...|-+.||+.-.. .+|++|| .|+.++..+..|.-++...|++.++++.++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 359999999999999999999999986544 4677765 356688999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
+.+++.+++.++++++++++... ..++|.++++|.-+...+ +..|..++|+++.
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 99999999999999999999876 578999999998655444 4578888887764
No 118
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.72 E-value=4.4e-16 Score=150.89 Aligned_cols=201 Identities=23% Similarity=0.232 Sum_probs=134.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHH-----------cCCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLE-----------TANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~-----------~~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
+.+|+|+.|.++++..+..++. ....| ++||+||||||||+++++++... ...++.+++.+.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~i~~~~~ 124 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDF 124 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCeeeccHHHH
Confidence 4589999999999877766553 12333 39999999999999999999987 344555555431
Q ss_pred c------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhcC-
Q 016800 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS- 183 (382)
Q Consensus 125 ~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~- 183 (382)
. ....++..+.. .... .+.||+|||+|.+.. ...+.|+..|+...
T Consensus 125 ~~~~~g~~~~~l~~~f~~----a~~~----------~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQ----AKKN----------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHHHhcccHHHHHHHHHH----HHhc----------CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1 11222322222 1111 446999999998742 23455666666433
Q ss_pred -CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 016800 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (382)
Q Consensus 184 -~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~ 258 (382)
..+.+|.+||.++.+.+++.+ |+. .+.++.|+.++..++++..+...... ++..+..++..+.| +.+++.+++.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHH
Confidence 356788888999999999987 565 79999999999999998877654432 33456677777654 3344444444
Q ss_pred HHHHhc----CCCCChhhHhhhhC
Q 016800 259 GAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 259 ~~~~~~----~~~It~~~v~~~~~ 278 (382)
.++..+ ...|+.+++..++.
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAID 293 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHH
Confidence 443322 45699999887764
No 119
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.71 E-value=7.8e-16 Score=146.46 Aligned_cols=203 Identities=18% Similarity=0.141 Sum_probs=136.2
Q ss_pred CCCCcccCcHHHHHHHHHHHH--------cC-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc--
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE--------TA-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-- 125 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~--------~~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-- 125 (382)
.+|+++.|.+.+++.+..... .| ..|. +||+||||||||.+|+++++++ +..++.+++....
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLFGG 298 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhccc
Confidence 578999999888877665321 12 2233 9999999999999999999997 3556666654211
Q ss_pred ----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHHHhcCCceEEE
Q 016800 126 ----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMETYSKVTRFF 189 (382)
Q Consensus 126 ----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~Ll~~le~~~~~~~~I 189 (382)
+...++..+.. .... .+.||+|||+|.+.. ...+.|+..|++....+.+|
T Consensus 299 ~vGese~~l~~~f~~----A~~~----------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 299 IVGESESRMRQMIRI----AEAL----------SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ccChHHHHHHHHHHH----HHhc----------CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 11223333322 1111 456999999997632 12345667777766677788
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhcC----CCHHHHHHHHHHHH
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSISQ----GDLRRAITYLQGAA 261 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~s~----gdlr~a~~~l~~~~ 261 (382)
.+||.++.+++++.+ |+. .+.++.|+.++..++++..+++.+.. .++..++.+++.+. +|+..+.......+
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A 444 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIA 444 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 889999999999976 776 78999999999999999888775432 23455777887764 45555444433333
Q ss_pred HhcCCCCChhhHhhhhCCC
Q 016800 262 RLFGSSITSKDLISVSGVI 280 (382)
Q Consensus 262 ~~~~~~It~~~v~~~~~~~ 280 (382)
...+..++.+++..++...
T Consensus 445 ~~~~~~lt~~dl~~a~~~~ 463 (489)
T CHL00195 445 FYEKREFTTDDILLALKQF 463 (489)
T ss_pred HHcCCCcCHHHHHHHHHhc
Confidence 3335677877776666443
No 120
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.71 E-value=3.2e-16 Score=135.13 Aligned_cols=191 Identities=19% Similarity=0.247 Sum_probs=128.7
Q ss_pred CCCCccc-C--cHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 58 KQVKDVA-H--QEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
.+|+.++ | ++.+............. ..++||||+|+||||+++++++++.... .+..++++++.+. ...+..
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~~~~f--~~~~~~ 81 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLSAEEF--IREFAD 81 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEEHHHH--HHHHHH
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeecHHHH--HHHHHH
Confidence 3788886 4 45555666666555333 2389999999999999999999874321 1345666665431 111111
Q ss_pred HH-----HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHHhcC-CceEEEEeecC-cc---ccch
Q 016800 133 KI-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALRRTMETYS-KVTRFFFICNY-IS---RIIE 200 (382)
Q Consensus 133 ~l-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--~~~~Ll~~le~~~-~~~~~Il~~~~-~~---~l~~ 200 (382)
.+ ..+... .. ...+++||+++.+... .+..|+.+++... ....+|++++. |. .+.+
T Consensus 82 ~~~~~~~~~~~~~-~~-----------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 82 ALRDGEIEEFKDR-LR-----------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHTTSHHHHHHH-HC-----------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHcccchhhhhh-hh-----------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 11 111111 11 5579999999999754 4888888888642 23457777743 33 3668
Q ss_pred hhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016800 201 PLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (382)
Q Consensus 201 ~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~ 263 (382)
.++||+. .+.+.+|+.++...++++.+...|+.+++++++.|++...+|+|.+...++.+..+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 8999976 89999999999999999999999999999999999999999999999999888764
No 121
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.70 E-value=1.3e-15 Score=142.63 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=130.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+++++.|.+..++.+...+.. ....++||+||||||||++|+++++.+. ..++.+++.+.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~~~l 201 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSEL 201 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC------CCEEEeehHHH
Confidence 4678999999999888877632 1223499999999999999999999873 44566665432
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc-----CCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY-----SKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~-----~~~~ 186 (382)
.. .......+.......... .+.||+|||+|.+. ...+..+..++.+. ...+
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~----------~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 271 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREK----------APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNV 271 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhc----------CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCE
Confidence 11 001111222222221111 45699999999883 34455566665432 2467
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAAR 262 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~ 262 (382)
.+|++||.++.+.+++.+ |+. .+.|++|+.++..++++..++...+. .+-.+..++..+.| ..+.+..++..++.
T Consensus 272 ~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~ 350 (389)
T PRK03992 272 KIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGM 350 (389)
T ss_pred EEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 889999999999999986 666 79999999999999998877654432 11335667776644 23333334444443
Q ss_pred hc----CCCCChhhHhhhh
Q 016800 263 LF----GSSITSKDLISVS 277 (382)
Q Consensus 263 ~~----~~~It~~~v~~~~ 277 (382)
.+ ...|+.+++.+++
T Consensus 351 ~a~~~~~~~i~~~d~~~A~ 369 (389)
T PRK03992 351 FAIRDDRTEVTMEDFLKAI 369 (389)
T ss_pred HHHHcCCCCcCHHHHHHHH
Confidence 32 2456666665544
No 122
>CHL00176 ftsH cell division protein; Validated
Probab=99.69 E-value=2.7e-15 Score=147.30 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=135.4
Q ss_pred CCCCcccCcHHHHHHHHHHHH---cC--------CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE---TA--------NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~---~~--------~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.+|+|+.|.++.++.+...+. .. ..| ++||+||||||||++|++++.+. ...++.+++++..
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~------~~p~i~is~s~f~ 253 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------EVPFFSISGSEFV 253 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeeeccHHHHH
Confidence 588999999988877766642 11 222 49999999999999999999987 3445555554321
Q ss_pred ch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------H---HHHHHHHHHHhc--CCceE
Q 016800 126 GI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------D---AQNALRRTMETY--SKVTR 187 (382)
Q Consensus 126 ~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~---~~~~Ll~~le~~--~~~~~ 187 (382)
.. ..-...+..+....... .+.||+|||+|.+.. . ..+.|+..++.. ...+.
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~----------~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKEN----------SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcC----------CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 10 00011122222221111 456999999998832 2 234445445443 24567
Q ss_pred EEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHh
Q 016800 188 FFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAARL 263 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~~ 263 (382)
+|.+||.++.+.+++.+ |+. .+.|++|+.++...+++..++.... .++..+..+++.+.| +.+++.+++..++..
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~ 402 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAIL 402 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 88888999999999987 444 8999999999999999998876432 345567888888776 555555555555433
Q ss_pred c----CCCCChhhHhhhhC
Q 016800 264 F----GSSITSKDLISVSG 278 (382)
Q Consensus 264 ~----~~~It~~~v~~~~~ 278 (382)
+ ...|+.+++.+++.
T Consensus 403 a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 403 TARRKKATITMKEIDTAID 421 (638)
T ss_pred HHHhCCCCcCHHHHHHHHH
Confidence 2 35689998888764
No 123
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.69 E-value=4.6e-15 Score=138.30 Aligned_cols=203 Identities=20% Similarity=0.223 Sum_probs=129.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+.+++.+...+.. | .+.++||+||||||||++++++++.+. ..++.+.+...
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~------~~fi~i~~s~l 215 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT------ATFIRVVGSEF 215 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEehHHH
Confidence 4889999999999888876631 1 122399999999999999999999872 34455544321
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHH---Hhc--CCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM---ETY--SKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~l---e~~--~~~~ 186 (382)
.. ...-...+.......... .+.||+|||+|.+. ...+..+..++ +.. ..++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~----------~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLAREN----------APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhc----------CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 00 001111122222111111 55799999999763 12333444444 432 3467
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAAR 262 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~ 262 (382)
.+|++||.++.+++++.+ |+. .+.|++|+.++...+++..+.+.+.. .+-.+..++..+.| +...+.++++.++.
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~ 364 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGM 364 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 789999999999999876 665 79999999999999998877665543 22235666766643 44555555555554
Q ss_pred hc----CCCCChhhHhhhh
Q 016800 263 LF----GSSITSKDLISVS 277 (382)
Q Consensus 263 ~~----~~~It~~~v~~~~ 277 (382)
.+ ...|+.+++.+++
T Consensus 365 ~A~r~~~~~i~~~df~~A~ 383 (398)
T PTZ00454 365 QAVRKNRYVILPKDFEKGY 383 (398)
T ss_pred HHHHcCCCccCHHHHHHHH
Confidence 33 2456666665543
No 124
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.68 E-value=2.1e-15 Score=141.46 Aligned_cols=209 Identities=19% Similarity=0.210 Sum_probs=131.3
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
+.++..+.+|+|+.|.+..++.+..++.. + ...++||+||||||||++|+++++.+. ..++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~------~~fi 246 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS------ATFL 246 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC------CCEE
Confidence 45556567999999999999988887742 1 222499999999999999999999873 3455
Q ss_pred EeecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHH---Hh
Q 016800 118 ELNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM---ET 181 (382)
Q Consensus 118 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~l---e~ 181 (382)
.+.+++... .......+.......... .+.||+|||+|.+. ...+..++.++ +.
T Consensus 247 ~V~~seL~~k~~Ge~~~~vr~lF~~A~~~----------~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 247 RVVGSELIQKYLGDGPKLVRELFRVAEEN----------APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred EEecchhhhhhcchHHHHHHHHHHHHHhC----------CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 555543211 001111122222211111 45699999998763 12334444444 32
Q ss_pred --cCCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcC-CCHHHHH
Q 016800 182 --YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQ-GDLRRAI 254 (382)
Q Consensus 182 --~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~-gdlr~a~ 254 (382)
....+.+|++||.++.+.+.+.+ |+. .+.|++|+.++...++.....+..+ +++ .+..++..+. -+...+.
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~~t~g~sgAdI~ 394 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIMAKDELSGADIK 394 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHHhcCCCCHHHHH
Confidence 23467889999999999999875 665 8999999999999999887765443 322 3455554442 2333333
Q ss_pred HHHHHHHHhc----CCCCChhhHhhhh
Q 016800 255 TYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 255 ~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
.++..++..+ ...|+.+++..+.
T Consensus 395 ~i~~eA~~~Alr~~r~~Vt~~D~~~A~ 421 (438)
T PTZ00361 395 AICTEAGLLALRERRMKVTQADFRKAK 421 (438)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHH
Confidence 3444444333 3567777776654
No 125
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.68 E-value=2.1e-15 Score=134.57 Aligned_cols=104 Identities=25% Similarity=0.293 Sum_probs=80.2
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec------------CccccchhhhcccceEEecCCCHHHHHHHH
Q 016800 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 156 ~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
+.|++|||+|.|+.++...|-+.+|..-.. .+|++|| .++.++..+.+||.++...|++.+|+++++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELSP-IIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCCc-EEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 359999999999999999999999976544 4677776 345678899999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHH
Q 016800 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGA 260 (382)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~ 260 (382)
.-+|+.+++.+++++++.+.... ..++|.|++++.-+
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 99999999999999999998765 56899999998754
No 126
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=1.6e-15 Score=153.91 Aligned_cols=182 Identities=21% Similarity=0.273 Sum_probs=125.1
Q ss_pred cccCcHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH---
Q 016800 62 DVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT--- 132 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 132 (382)
+++|++++++.+..++.. .+.++++|+||||||||++|+++++.+. ..+..++.........+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~------~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN------RKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc------CCeEEEeCCCcccHHHHcCCCC
Confidence 578999999988876642 2345699999999999999999999983 3445554433211111110
Q ss_pred --------H-HHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHHHhc---------------CC
Q 016800 133 --------K-IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETY---------------SK 184 (382)
Q Consensus 133 --------~-l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~----~~~~Ll~~le~~---------------~~ 184 (382)
. ...+... . ....|++|||+|.++++ ..++|+..++.. ..
T Consensus 395 ~~~g~~~g~i~~~l~~~-~-----------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKA-K-----------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred ceeCCCCchHHHHHHHh-C-----------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 0 0111100 0 13359999999999754 347888888731 13
Q ss_pred ceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHH-----HHh-----CCCCCHHHHHHHHHhcC--CCHHH
Q 016800 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----NEE-----GLNLDAEALSTLSSISQ--GDLRR 252 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~~~~~~~~~l~~~s~--gdlr~ 252 (382)
++.||+++|..+.+.+++++|+.++.|++++.++...+++..+ +.. ++.++++++..|++... ...|.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred CEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 5778899999999999999999999999999999988887644 222 35689999999987442 34555
Q ss_pred HHHHHHHHH
Q 016800 253 AITYLQGAA 261 (382)
Q Consensus 253 a~~~l~~~~ 261 (382)
+...++..+
T Consensus 543 l~r~i~~~~ 551 (775)
T TIGR00763 543 LERQIEKIC 551 (775)
T ss_pred HHHHHHHHH
Confidence 555554444
No 127
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.5e-15 Score=138.68 Aligned_cols=185 Identities=23% Similarity=0.259 Sum_probs=130.6
Q ss_pred CCCCcccCcHHHHHHHHHHHH-----------cC-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE-----------TA-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
-+|+|+-|+++++..++..+. -| ..| .+|||||||||||++|++++++. ..+|+.+.+++.
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~------~~nFlsvkgpEL 504 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA------GMNFLSVKGPEL 504 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh------cCCeeeccCHHH
Confidence 478999999999999987663 23 223 39999999999999999999987 456777766542
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhc--CCc
Q 016800 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY--SKV 185 (382)
Q Consensus 125 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~--~~~ 185 (382)
.+...+++.+....+. ...|+++||+|.+.. ...+.|+.-|+.. ..+
T Consensus 505 ~sk~vGeSEr~ir~iF~kAR~~--------------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 505 FSKYVGESERAIREVFRKARQV--------------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred HHHhcCchHHHHHHHHHHHhhc--------------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 1223444443332221 347999999998843 2345666666643 346
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQGA 260 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~~~ 260 (382)
+.+|..||.++.+++++.+ |+. .+.+++|+.+...++++..+++ .+++++ .++.|++.+.| +-..+..+++.+
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~lCq~A 648 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAVCQEA 648 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHHHHHH
Confidence 6677788999999999999 776 8899999999999999877765 445555 57888886644 233344555555
Q ss_pred HHhc
Q 016800 261 ARLF 264 (382)
Q Consensus 261 ~~~~ 264 (382)
+..+
T Consensus 649 ~~~a 652 (693)
T KOG0730|consen 649 ALLA 652 (693)
T ss_pred HHHH
Confidence 5543
No 128
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.65 E-value=2.7e-14 Score=128.19 Aligned_cols=221 Identities=16% Similarity=0.186 Sum_probs=137.1
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
....||.....|..|-.-.++..+...+...+..+ .+.++|+||+|+|||++++.+++.+.+... .+..+......
T Consensus 8 l~~~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~---~~~~~~~~~~~ 83 (269)
T TIGR03015 8 FTTKPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQERV---VAAKLVNTRVD 83 (269)
T ss_pred CCCCCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe---EEeeeeCCCCC
Confidence 34556666555544333334555666666555543 224899999999999999999998743211 11111111110
Q ss_pred chHHHHH-------------------HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc---C
Q 016800 126 GINVVRT-------------------KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---S 183 (382)
Q Consensus 126 ~~~~~~~-------------------~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---~ 183 (382)
..+.+.. .+..+..... ..++..+++|||++.++....+.|..+.+.. .
T Consensus 84 ~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~ 154 (269)
T TIGR03015 84 AEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF---------AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNA 154 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH---------hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCC
Confidence 1111111 1111111100 1225679999999999988877776554421 2
Q ss_pred CceEEEEeecCcc--c----cchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHhcCCCHHH
Q 016800 184 KVTRFFFICNYIS--R----IIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEG----LNLDAEALSTLSSISQGDLRR 252 (382)
Q Consensus 184 ~~~~~Il~~~~~~--~----l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~s~gdlr~ 252 (382)
..+.+++++.... . -...+.+|.. .+.+++++.+++..++...+...| ..+++++++.|++.++|++|.
T Consensus 155 ~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~ 234 (269)
T TIGR03015 155 KLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL 234 (269)
T ss_pred CeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH
Confidence 2334566654321 1 1345777754 789999999999999999887655 358999999999999999999
Q ss_pred HHHHHHHHHHhc----CCCCChhhHhhhhCC
Q 016800 253 AITYLQGAARLF----GSSITSKDLISVSGV 279 (382)
Q Consensus 253 a~~~l~~~~~~~----~~~It~~~v~~~~~~ 279 (382)
+..++..+...+ ...|+.++|+.++..
T Consensus 235 i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 235 INILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 766666654432 467888888776643
No 129
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-14 Score=136.10 Aligned_cols=180 Identities=22% Similarity=0.249 Sum_probs=130.8
Q ss_pred CCCcccCcHHHHHHHHHHHHc----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-
Q 016800 59 QVKDVAHQEEVVRVLTNTLET----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR- 125 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~- 125 (382)
.|+++-|.++.+..|...+.. | .+|. +|||||||||||.+|++++.++ ..+++.++++...
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------~vPf~~isApeivS 261 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------GVPFLSISAPEIVS 261 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc------CCceEeecchhhhc
Confidence 488999999999888776632 2 2223 9999999999999999999998 5677777775421
Q ss_pred -----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH-----------HHHHHHHHHHhcC------
Q 016800 126 -----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-----------AQNALRRTMETYS------ 183 (382)
Q Consensus 126 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~Ll~~le~~~------ 183 (382)
+...+++.+.. +... .+.|+||||+|.+++. ....|+..|++..
T Consensus 262 GvSGESEkkiRelF~~----A~~~----------aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQ----AKSN----------APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ccCcccHHHHHHHHHH----Hhcc----------CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 23344444433 3222 5679999999999753 2346777777543
Q ss_pred CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016800 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~ 259 (382)
..+.+|.+||.|+.+.++|++ |+. .|.+.-|+.....++|..+|+...+.- +=....|+..+.|-++.-+..|..
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHH
Confidence 456778889999999999998 555 799999999999999999998655432 223677888887766655544433
No 130
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=2.5e-15 Score=123.11 Aligned_cols=129 Identities=18% Similarity=0.137 Sum_probs=109.3
Q ss_pred cCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
.++..+++++++.+......+. ..+ +||+++|.|+..++|+|++++|+||.++.||++|+.+.++++
T Consensus 33 ~~~~i~Vd~iReii~~~~~~~~------------~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llp 99 (206)
T PRK08485 33 IKEEFKIEDAKEVIAEAYIAES------------EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLP 99 (206)
T ss_pred CCCCCCHHHHHHHHHHHhhCCC------------CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCch
Confidence 4446789999998777543321 334 457899999999999999999999999999999999999999
Q ss_pred hhhcccce-------------EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016800 201 PLASRCAK-------------FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (382)
Q Consensus 201 ~l~sr~~~-------------i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~ 263 (382)
||+|||+. +.|++++.+++.++|.. .+++++...+++.+.|+..+.|.+|.++.+.++...+
T Consensus 100 TI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 100 TIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEELEY 174 (206)
T ss_pred HHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 99999986 78999999999999998 6777887788889999999999999988777665543
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.64 E-value=1.6e-14 Score=148.11 Aligned_cols=205 Identities=19% Similarity=0.223 Sum_probs=149.3
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCCC
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD 124 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~~ 124 (382)
.++.++.+|..++.++|+++.+..+...+.....++++|+||||+|||+++..++..+.... ..+..++.++....
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 57889999999999999999999999988888888899999999999999999999874321 12344555543221
Q ss_pred ----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEee
Q 016800 125 ----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 125 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
.....+...+..+....... ++..|+||||+|.+.. ++++.|...++. ....+|.+|
T Consensus 241 ~a~~~~~g~~e~~l~~~l~~~~~~---------~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaT 309 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKS---------EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGAT 309 (852)
T ss_pred hhcchhhhhHHHHHHHHHHHHHhc---------CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeC
Confidence 11122233333333221111 1457999999998852 356777766653 456677777
Q ss_pred cCc-----cccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC---C---HHHHHHHH
Q 016800 193 NYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG---D---LRRAITYL 257 (382)
Q Consensus 193 ~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~g---d---lr~a~~~l 257 (382)
+.. ..+.+++.+|++.+.++.|+.++...+|...... .++.++++++..++..+.+ | |.+|+.++
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidll 389 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLI 389 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHH
Confidence 654 3468999999999999999999999998876554 3567889999999888743 3 88999999
Q ss_pred HHHHHhc
Q 016800 258 QGAARLF 264 (382)
Q Consensus 258 ~~~~~~~ 264 (382)
+.++...
T Consensus 390 d~a~a~~ 396 (852)
T TIGR03346 390 DEAAARI 396 (852)
T ss_pred HHHHHHH
Confidence 9988653
No 132
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.6e-14 Score=132.58 Aligned_cols=206 Identities=16% Similarity=0.231 Sum_probs=145.3
Q ss_pred CCCcccC---cHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc--chHHHH
Q 016800 59 QVKDVAH---QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--GINVVR 131 (382)
Q Consensus 59 ~~~~~~g---~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~ 131 (382)
+|++++. +.-+......+..... .+.++||||.|.||||++++++++...... +..++++...+.. .+..++
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~-~a~v~y~~se~f~~~~v~a~~ 163 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGP-NARVVYLTSEDFTNDFVKALR 163 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCC-CceEEeccHHHHHHHHHHHHH
Confidence 6676663 3344445555555432 233999999999999999999999854322 2345544443210 011111
Q ss_pred H-HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCce-EEEEeecCcc----ccchhhh
Q 016800 132 T-KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSKVT-RFFFICNYIS----RIIEPLA 203 (382)
Q Consensus 132 ~-~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~-~~Il~~~~~~----~l~~~l~ 203 (382)
+ .+..|-.. | ...+++|||++.+.. ..+..|+.++....... .+|++++.+. .+.+.++
T Consensus 164 ~~~~~~Fk~~----------y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~ 230 (408)
T COG0593 164 DNEMEKFKEK----------Y---SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLR 230 (408)
T ss_pred hhhHHHHHHh----------h---ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHH
Confidence 1 11111111 1 235999999999854 45888888887654332 5777775432 3568999
Q ss_pred cccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhh
Q 016800 204 SRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVS 277 (382)
Q Consensus 204 sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~ 277 (382)
||+. ++.+.||+.+....+|...+...++.++++++..++....+|+|.+...+..+..++ +..||.+.+.+++
T Consensus 231 SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L 310 (408)
T COG0593 231 SRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEIL 310 (408)
T ss_pred HHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHH
Confidence 9986 899999999999999999999999999999999999999999999999888887665 5689988888776
Q ss_pred C
Q 016800 278 G 278 (382)
Q Consensus 278 ~ 278 (382)
.
T Consensus 311 ~ 311 (408)
T COG0593 311 K 311 (408)
T ss_pred H
Confidence 4
No 133
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.63 E-value=4.8e-15 Score=149.10 Aligned_cols=241 Identities=20% Similarity=0.236 Sum_probs=148.8
Q ss_pred CCCchHHHHhhccccccCCchhhhhcCCCCC----------CcccCcHHHHHHHHHHHHc------CCCCcEEEeCCCCC
Q 016800 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV----------KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGT 93 (382)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~----------~~~~g~~~~~~~l~~~l~~------~~~~~lll~Gp~G~ 93 (382)
+...+-.+.|.+-.| ....||.. +.+..+ ++..|++++++.+..++.. .+.+.++|+||||+
T Consensus 283 ~~~~e~~~~~~yl~~-~~~~pw~~-~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~ 360 (784)
T PRK10787 283 PMSAEATVVRGYIDW-MVQVPWNA-RSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGV 360 (784)
T ss_pred CCCchHHHHHHHHHH-HHhCCCCC-CCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCC
Confidence 333444444444433 24478955 444332 3588999999988877753 24445999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC-CCCCCCCCCcEEEEEeCCCCCCHHH-
Q 016800 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDA- 171 (382)
Q Consensus 94 GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~vliiDe~d~l~~~~- 171 (382)
|||++++.+++.+ +.++..++.........++..-..+.....+... .... ......|++|||+|+++++.
T Consensus 361 GKTtl~~~ia~~l------~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~ 433 (784)
T PRK10787 361 GKTSLGQSIAKAT------GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMR 433 (784)
T ss_pred CHHHHHHHHHHHh------CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccC
Confidence 9999999999987 3445555554433332222211111100000000 0000 00134599999999998764
Q ss_pred ---HHHHHHHHHhc---------------CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHH-----
Q 016800 172 ---QNALRRTMETY---------------SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----- 228 (382)
Q Consensus 172 ---~~~Ll~~le~~---------------~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----- 228 (382)
+++|+.+++.. -.++.||+|+|.. .+.+++++|+.++.|.+++.++..++.+....
T Consensus 434 g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~ 512 (784)
T PRK10787 434 GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIE 512 (784)
T ss_pred CCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHH
Confidence 58999999741 1456677777765 59999999999999999999999998877653
Q ss_pred Hh-----CCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHhc------C-----CCCChhhHhhhhCCC
Q 016800 229 EE-----GLNLDAEALSTLSSISQ--GDLRRAITYLQGAARLF------G-----SSITSKDLISVSGVI 280 (382)
Q Consensus 229 ~~-----~~~~~~~~~~~l~~~s~--gdlr~a~~~l~~~~~~~------~-----~~It~~~v~~~~~~~ 280 (382)
+. .+.++++++..|++.+. --.|.+...+++.+... + -.|+.+.+...++..
T Consensus 513 ~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 513 RNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 11 24588999999987441 12444444444433221 1 246677777776644
No 134
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.63 E-value=2.4e-14 Score=133.66 Aligned_cols=202 Identities=20% Similarity=0.218 Sum_probs=127.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
..++++.|.+..++.+...+... ...+++|+||||||||++|+++++.+. ..++.+.+.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~~~~l 192 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSEL 192 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC------CCEEecchHHH
Confidence 47789999999999888876421 122399999999999999999999873 33444433221
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc-----CCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY-----SKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~-----~~~~ 186 (382)
.. .......+......... ..+.||+|||+|.+. ...+..+..++... ..++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~----------~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 262 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKE----------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNV 262 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHh----------cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCE
Confidence 00 00111112222211111 144699999999873 23344555555432 3467
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCH-HHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDL-RRAITYLQGAA 261 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~gdl-r~a~~~l~~~~ 261 (382)
.+|++||.++.+.+.+.+ |+. .+.|++|+.++..+++...+.... +++ -.+..+++.+.|-. +.+..++..++
T Consensus 263 ~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~--l~~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 263 KVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK--LAEDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred EEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC--CCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999875 655 799999999999999987765433 222 23566777665432 23333333333
Q ss_pred Hhc----CCCCChhhHhhhh
Q 016800 262 RLF----GSSITSKDLISVS 277 (382)
Q Consensus 262 ~~~----~~~It~~~v~~~~ 277 (382)
..+ ...|+.+++..++
T Consensus 341 ~~a~~~~~~~i~~~d~~~a~ 360 (364)
T TIGR01242 341 MFAIREERDYVTMDDFIKAV 360 (364)
T ss_pred HHHHHhCCCccCHHHHHHHH
Confidence 322 3567777776654
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.62 E-value=4.6e-14 Score=141.05 Aligned_cols=215 Identities=16% Similarity=0.170 Sum_probs=147.1
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCC---
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD--- 123 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~--- 123 (382)
++++-+-..++.++|+++.+..+.+.+.....++++|+||||||||++++.++..+...+ ..+..++.++...
T Consensus 176 l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~lla 255 (758)
T PRK11034 176 LNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA 255 (758)
T ss_pred HHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhc
Confidence 444446678899999999999999988887777899999999999999999998763322 1122333332211
Q ss_pred -CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCceEEEEeec
Q 016800 124 -DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 124 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
......+...+.......... +..|++|||+|.+- .+..+.|..+++. ....+|.+|+
T Consensus 256 G~~~~Ge~e~rl~~l~~~l~~~----------~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt 323 (758)
T PRK11034 256 GTKYRGDFEKRFKALLKQLEQD----------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTT 323 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhc----------CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCC
Confidence 111123333333322211111 44699999999871 2345566666654 4566777776
Q ss_pred Ccc-----ccchhhhcccceEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcC------CCHHHHHHHHH
Q 016800 194 YIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQ------GDLRRAITYLQ 258 (382)
Q Consensus 194 ~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~s~------gdlr~a~~~l~ 258 (382)
... ...+++.+|++.+.+++|+.++...+|+.+.. .+++.++++++..+++.+. --|.+|+.+++
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlld 403 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVID 403 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHH
Confidence 543 46899999999999999999999999987654 3577899999998887763 34779999999
Q ss_pred HHHHhc--------CCCCChhhHhhhh
Q 016800 259 GAARLF--------GSSITSKDLISVS 277 (382)
Q Consensus 259 ~~~~~~--------~~~It~~~v~~~~ 277 (382)
.++... ...++.+++.+++
T Consensus 404 ea~a~~~~~~~~~~~~~v~~~~i~~v~ 430 (758)
T PRK11034 404 EAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_pred HHHHhhccCcccccccccChhhHHHHH
Confidence 887532 1235656665554
No 136
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.62 E-value=1.1e-13 Score=122.90 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH---------HHHHHH
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR---------TKIKTF 137 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~ 137 (382)
..+++.+..++..+. +++|+||||||||++|+++++.+ +..++.+++........+- .....+
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~ 79 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQF 79 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHH
Confidence 445566666777654 69999999999999999999876 3455556554322211110 011111
Q ss_pred HHhhhcC-C-----CCCCCCC--CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC----------------CceEEEEeec
Q 016800 138 AAVAVGS-G-----QRRGGYP--CPPYKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFICN 193 (382)
Q Consensus 138 ~~~~~~~-~-----~~~~~~~--~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------------~~~~~Il~~~ 193 (382)
....... . ...+... .....+++|||+++++++.++.|+.+|++.. +..++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 1000000 0 0000000 0133599999999999999999999998531 3567888888
Q ss_pred Ccc-----ccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc----------CCCHHHHHHHHH
Q 016800 194 YIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS----------QGDLRRAITYLQ 258 (382)
Q Consensus 194 ~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----------~gdlr~a~~~l~ 258 (382)
... .+.+.+.+||..+.++.|+.++..+++...+ .++++.++.+++.. .-.+|.++...+
T Consensus 160 ~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~ 234 (262)
T TIGR02640 160 PVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAE 234 (262)
T ss_pred CccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHH
Confidence 652 4678899999999999999999999987643 35677776666543 112777777666
Q ss_pred HHHHhc-CCCCChhhHhhh
Q 016800 259 GAARLF-GSSITSKDLISV 276 (382)
Q Consensus 259 ~~~~~~-~~~It~~~v~~~ 276 (382)
.+.... ...++.+++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~ 253 (262)
T TIGR02640 235 VATQQDIPVDVDDEDFVDL 253 (262)
T ss_pred HHHHcCCCCCCCcHHHHHH
Confidence 555443 233444444443
No 137
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.61 E-value=5.4e-14 Score=120.45 Aligned_cols=121 Identities=25% Similarity=0.301 Sum_probs=101.8
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec-------------CccccchhhhcccceEEecCCCHHHHHHH
Q 016800 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN-------------YISRIIEPLASRCAKFRFKPLSEEVMSSR 222 (382)
Q Consensus 156 ~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~-------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 222 (382)
+.|++|||++.+.-+....|.+.+|.+-..+ +||++| .|+.+++.+..|..+++..++++++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 4599999999999999999999999876654 566664 34568899999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 223 VLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
++.+++.+++.++++++..+++.. ..++|.++++|.-+...+ ++.|..++|+++.
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 999999999999999999999865 678999999987544333 3578888876654
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.61 E-value=2.6e-14 Score=145.94 Aligned_cols=205 Identities=19% Similarity=0.191 Sum_probs=148.3
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD 123 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~ 123 (382)
..+++++.+|..+++++|+++.+..+...+.....++++|+||||||||+++..++..+.... ..+..++.++...
T Consensus 165 ~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 165 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred hhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 357889999999999999999999999888888888899999999999999999999874321 1234555554432
Q ss_pred C----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEe
Q 016800 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 124 ~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
. .....+...++.......... ++.|+||||+|.+.. ++++.|...++. +...+|.+
T Consensus 245 l~ag~~~~g~~e~~lk~~~~~~~~~~---------~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~Iga 313 (857)
T PRK10865 245 LVAGAKYRGEFEERLKGVLNDLAKQE---------GNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGA 313 (857)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHcC---------CCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEc
Confidence 1 111223333333322211111 457999999999853 357888887764 35567777
Q ss_pred ecCcc-----ccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhc------CCCHHHHHHH
Q 016800 192 CNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSIS------QGDLRRAITY 256 (382)
Q Consensus 192 ~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s------~gdlr~a~~~ 256 (382)
|+... .+.+++.+||+.+.+..|+.++...+|+..... .++.++++++...+..+ .--+..|+.+
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~L 393 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDL 393 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHH
Confidence 76543 378999999999999999999999998776644 35678888888876666 3457778888
Q ss_pred HHHHHHh
Q 016800 257 LQGAARL 263 (382)
Q Consensus 257 l~~~~~~ 263 (382)
++.++..
T Consensus 394 iD~aaa~ 400 (857)
T PRK10865 394 IDEAASS 400 (857)
T ss_pred HHHHhcc
Confidence 8877764
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.61 E-value=2e-14 Score=146.33 Aligned_cols=194 Identities=22% Similarity=0.341 Sum_probs=135.4
Q ss_pred CcccCcHHHHHHHHHHHHcC-------CCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETA-------NCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++||+++++.+.+.+... ..|. ++|+||+|+|||.+|+++++.+++.. ..++.+++++......+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~---~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE---QNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC---cceEEEeHHHhhhhhhhc
Confidence 47889999999888887531 2232 89999999999999999999986432 345566654321111111
Q ss_pred HHHHHHHHhhhcC-CCCC-----CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecC
Q 016800 132 TKIKTFAAVAVGS-GQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (382)
Q Consensus 132 ~~l~~~~~~~~~~-~~~~-----~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~ 194 (382)
. +....++- +... ......++.||++||+++++++.++.|+.++++.. .++.||+|||-
T Consensus 643 ~----l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 643 R----LKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred c----ccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 0 00000000 0000 00011267899999999999999999999999775 67889999863
Q ss_pred cc-----------------------------ccchhhhcccceEEecCCCHHHHHHHHHHHHHH-------h-CC--CCC
Q 016800 195 IS-----------------------------RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE-------E-GL--NLD 235 (382)
Q Consensus 195 ~~-----------------------------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~-------~-~~--~~~ 235 (382)
.. .+.|.+.+|+.++.|.|++.+++.+++...+.. . |+ .++
T Consensus 719 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~ 798 (852)
T TIGR03345 719 GSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYS 798 (852)
T ss_pred chHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEEC
Confidence 11 145788899999999999999999988775543 1 43 579
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHH
Q 016800 236 AEALSTLSSISQG---DLRRAITYLQGAA 261 (382)
Q Consensus 236 ~~~~~~l~~~s~g---dlr~a~~~l~~~~ 261 (382)
+++++.|++.+.+ ..|.+.+.++...
T Consensus 799 d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 799 EALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 9999999998876 6888888887644
No 140
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.60 E-value=6.7e-14 Score=133.14 Aligned_cols=172 Identities=21% Similarity=0.216 Sum_probs=113.1
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHc-----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCc
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSR 115 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~ 115 (382)
+++-+.+|+++.|.+..++.+...+.. + ...++|||||||||||++++++++.+..+.. ....
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 444457899999999999888887642 1 2223999999999999999999999843311 1122
Q ss_pred eEEeecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH------------HHHHHHH
Q 016800 116 VLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED------------AQNALRR 177 (382)
Q Consensus 116 ~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~Ll~ 177 (382)
++.+..++.. ....++..+....... .. +.+.||+|||+|.+... ..+.|+.
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a-~~---------g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKA-SD---------GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHh-hc---------CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 3333322211 0111222222111111 11 14579999999987321 2356777
Q ss_pred HHHhcC--CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCC
Q 016800 178 TMETYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLD 235 (382)
Q Consensus 178 ~le~~~--~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (382)
.|+... .++.+|.+||.++.+++++.+ |+. .|+|++|+.++..++++..+.. .++++
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~ 385 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLD 385 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCch
Confidence 776433 467788899999999999997 776 7999999999999999887754 34453
No 141
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.60 E-value=2.9e-14 Score=142.46 Aligned_cols=176 Identities=22% Similarity=0.301 Sum_probs=121.0
Q ss_pred CcccCcHHHHHHHHHHHHcC--------C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETA--------N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~--------~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
..++||+++++.+...+... + ..++||+||+|||||.+|+.+++.+. ..++.+++++......+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERHTVS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC------CCcEEeechhhcccccHH
Confidence 35789999999998888632 1 22499999999999999999999883 345666665432211111
Q ss_pred HHHHHHHHhhhcC-CCCCC-----CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecC
Q 016800 132 TKIKTFAAVAVGS-GQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (382)
Q Consensus 132 ~~l~~~~~~~~~~-~~~~~-----~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~ 194 (382)
..+ ....+. +.... .....++.||++||+|+++++.++.|+++|++.. .++.||++||.
T Consensus 532 ~Li----G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 532 RLI----GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred HHc----CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 111 000000 00000 0011256799999999999999999999998642 46678999872
Q ss_pred c-------------------------cccchhhhcccc-eEEecCCCHHHHHHHHHHHHH-------HhCC--CCCHHHH
Q 016800 195 I-------------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEGL--NLDAEAL 239 (382)
Q Consensus 195 ~-------------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~-------~~~~--~~~~~~~ 239 (382)
. ..+.|.+..|+. ++.|+|++.+++..++...+. ..|+ .++++++
T Consensus 608 g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~ 687 (758)
T PRK11034 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEAR 687 (758)
T ss_pred CHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHH
Confidence 2 124588889997 899999999999988876543 2344 4689999
Q ss_pred HHHHHhc
Q 016800 240 STLSSIS 246 (382)
Q Consensus 240 ~~l~~~s 246 (382)
+.|++..
T Consensus 688 ~~l~~~~ 694 (758)
T PRK11034 688 DWLAEKG 694 (758)
T ss_pred HHHHHhC
Confidence 9998754
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.60 E-value=1.1e-13 Score=117.65 Aligned_cols=190 Identities=21% Similarity=0.261 Sum_probs=134.7
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHH----HHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNT----LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~----l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
....|..+++++|-+..++.|.+- +......|+|++|+.|||||++++++..+....+ ..++++...+...+.
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~~L~~l~ 95 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKEDLGDLP 95 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHHHhccHH
Confidence 345577899999988888766443 3334444599999999999999999999886554 567888776655555
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-HHHHHHHHHHH----hcCCceEEEEeecCccccch---
Q 016800 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-DAQNALRRTME----TYSKVTRFFFICNYISRIIE--- 200 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-~~~~~Ll~~le----~~~~~~~~Il~~~~~~~l~~--- 200 (382)
.+.+.+... +.+-||++||...=.. ..-..|..+|| ..|.++.+..|+|..+.+.+
T Consensus 96 ~l~~~l~~~----------------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~ 159 (249)
T PF05673_consen 96 ELLDLLRDR----------------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFS 159 (249)
T ss_pred HHHHHHhcC----------------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhh
Confidence 554444321 1456999999764433 33455555554 67888888888876544332
Q ss_pred --------------------hhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCH-----HHHHHHHHhcCCCHHHHH
Q 016800 201 --------------------PLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDA-----EALSTLSSISQGDLRRAI 254 (382)
Q Consensus 201 --------------------~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~s~gdlr~a~ 254 (382)
.|..|+- .+.|.+++.++-.+++...+++.|+.+++ +++.......+.+.|.|.
T Consensus 160 d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~ 239 (249)
T PF05673_consen 160 DREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTAR 239 (249)
T ss_pred hccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2334655 78999999999999999999999999985 344444555667889888
Q ss_pred HHHHHHH
Q 016800 255 TYLQGAA 261 (382)
Q Consensus 255 ~~l~~~~ 261 (382)
+.++...
T Consensus 240 QF~~~l~ 246 (249)
T PF05673_consen 240 QFIDDLA 246 (249)
T ss_pred HHHHHHh
Confidence 8776543
No 143
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.59 E-value=7.8e-14 Score=126.63 Aligned_cols=216 Identities=17% Similarity=0.161 Sum_probs=131.2
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC---ceEE--------------
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKS---RVLE-------------- 118 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~---~~~~-------------- 118 (382)
.|..|.+++||++++..+.-.+-.....|+||+|+||+|||++++++++.+.+...... .+..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 47899999999999998876554444568999999999999999999999843111000 0000
Q ss_pred ----------eec--CC--CcchHHHHHHHHHHHHhhhcCC-CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC
Q 016800 119 ----------LNA--SD--DRGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (382)
Q Consensus 119 ----------~~~--~~--~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~ 183 (382)
+.. +. ..+...+...+.. +.. ...+.+......++++||++.++++.++.|+..|++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~------g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~ 156 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTR------GEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE 156 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhc------CCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCC
Confidence 000 00 0000011111100 000 01122222345699999999999999999999998653
Q ss_pred -------------CceEEEEeecCcc-ccchhhhcccc-eEEecCCCH-HHHHHHHHHHHH-------------------
Q 016800 184 -------------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN------------------- 228 (382)
Q Consensus 184 -------------~~~~~Il~~~~~~-~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~------------------- 228 (382)
....++.+.|..+ .+.+.+..|+. .+.+.++.. ++-.+++.+...
T Consensus 157 v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 236 (334)
T PRK13407 157 NVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQL 236 (334)
T ss_pred eEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCC
Confidence 2233333345433 47888999987 677776665 554555543211
Q ss_pred ----------HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 229 ----------EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 229 ----------~~~~~~~~~~~~~l~~~s---~-gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
-.++.++++.++++++.+ + ..+|..+.++..+...+ ...++.++|+.+.
T Consensus 237 ~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~ 303 (334)
T PRK13407 237 RGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVA 303 (334)
T ss_pred HHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHH
Confidence 023567888888777654 2 35777777665554443 3578888887665
No 144
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.1e-13 Score=129.30 Aligned_cols=183 Identities=19% Similarity=0.213 Sum_probs=129.8
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC------------CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA------------NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+-+.+++..+|.-++-.. ..|. +|+|||||||||.+|+++|++. ..+|+.+.++..
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa------g~NFisVKGPEL 581 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA------GANFISVKGPEL 581 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc------cCceEeecCHHH
Confidence 37889888999998888776332 2233 9999999999999999999997 578888877653
Q ss_pred cch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhc--CCceEEE
Q 016800 125 RGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY--SKVTRFF 189 (382)
Q Consensus 125 ~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~--~~~~~~I 189 (382)
.+. ..-...+...++.+-.. -+.||++||+|.|.+ ...|.|+--|+.. ...+.+|
T Consensus 582 lNkYVGESErAVR~vFqRAR~s----------aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQRARAS----------APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVI 651 (802)
T ss_pred HHHHhhhHHHHHHHHHHHhhcC----------CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEE
Confidence 221 11122233333332222 567999999999943 3467777777654 3455677
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhc------CCCHHHHHHH
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSIS------QGDLRRAITY 256 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s------~gdlr~a~~~ 256 (382)
.+||.|+.+++++.+ |+. .+.+..|+.++...+|+.+.+..+..+++++ ++.|+... |-|+..+...
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 778999999999998 554 7888999999999999999887666676654 77777643 4455544443
No 145
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.4e-14 Score=138.29 Aligned_cols=229 Identities=22% Similarity=0.284 Sum_probs=152.9
Q ss_pred cCCCCCchHHHHhhccccccCCchhhhhcCCC--------CC-CcccCcHHHHHHHHHHHHc------CCCCcEEEeCCC
Q 016800 27 QSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPK--------QV-KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPP 91 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~--------~~-~~~~g~~~~~~~l~~~l~~------~~~~~lll~Gp~ 91 (382)
..++..++.++.|++-.| .-..||..+-.-. -+ .|-.|-+++++.+..++.- -+.|.++|+|||
T Consensus 281 ~m~~~SaE~~ViRnYlDw-ll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPP 359 (782)
T COG0466 281 TMSPMSAEATVIRNYLDW-LLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPP 359 (782)
T ss_pred cCCCCCchHHHHHHHHHH-HHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCC
Confidence 456677777777777665 4567887654331 11 3556888888888777642 244569999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH-
Q 016800 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED- 170 (382)
Q Consensus 92 G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~- 170 (382)
|+|||++++.+|+.+ +..|+.+.-...+....+|..-..+....++.-.+--...+....++++||+|+|+.+
T Consensus 360 GVGKTSLgkSIA~al------~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~ 433 (782)
T COG0466 360 GVGKTSLGKSIAKAL------GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSF 433 (782)
T ss_pred CCCchhHHHHHHHHh------CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCC
Confidence 999999999999998 4667777666555444444332222211110000000000115569999999999754
Q ss_pred ---HHHHHHHHHH-------------hcC--CceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHH-----H
Q 016800 171 ---AQNALRRTME-------------TYS--KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI-----C 227 (382)
Q Consensus 171 ---~~~~Ll~~le-------------~~~--~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~-----~ 227 (382)
-..+|++.|+ -+. ..+.||.|+|..+.++.+|..|..++++..++.+|-.++.++. .
T Consensus 434 rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~ 513 (782)
T COG0466 434 RGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQL 513 (782)
T ss_pred CCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHH
Confidence 3567777775 111 3577899999999999999999999999999999988776653 3
Q ss_pred HHhC-----CCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 016800 228 NEEG-----LNLDAEALSTLSSIS--QGDLRRAITYLQGAAR 262 (382)
Q Consensus 228 ~~~~-----~~~~~~~~~~l~~~s--~gdlr~a~~~l~~~~~ 262 (382)
+..| +.++++++..|++.. ..-+|.+-..+.+.+.
T Consensus 514 ~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~R 555 (782)
T COG0466 514 KEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICR 555 (782)
T ss_pred HHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHH
Confidence 3344 458999999888754 2236666666666554
No 146
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.58 E-value=5.9e-14 Score=142.36 Aligned_cols=176 Identities=22% Similarity=0.257 Sum_probs=122.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+++.|.+.+++.+...+.- + +.|. +|||||||||||++|++++.++ ..+++.+++++.
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l 523 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEI 523 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHH
Confidence 4789999999999888877642 1 2333 9999999999999999999987 345666666532
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHHHh--cCCceEE
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMET--YSKVTRF 188 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~Ll~~le~--~~~~~~~ 188 (382)
.. ...-...+...+...... .+.||+|||+|.+.+ ...+.|+..|+. ...++.+
T Consensus 524 ~~~~vGese~~i~~~f~~A~~~----------~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQA----------APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHhc----------CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 11 111112233222222111 557999999998731 234667777773 3456778
Q ss_pred EEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCHH
Q 016800 189 FFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLR 251 (382)
Q Consensus 189 Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~gdlr 251 (382)
|.+||.++.+++++.+ |+. .+.|++|+.++..++++...++ ..+++ ..++.+++.+.|--.
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sg 658 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTG 658 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCH
Confidence 8899999999999986 887 8999999999999998765543 33433 347788887766443
No 147
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.58 E-value=8.8e-14 Score=142.25 Aligned_cols=202 Identities=17% Similarity=0.181 Sum_probs=147.8
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCCC--
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD-- 124 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~~-- 124 (382)
++++-+...++.++|+++.++.+.+++.....++++|+||||||||+++..++..+.... ..+..++.++....
T Consensus 169 l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a 248 (821)
T CHL00095 169 LTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA 248 (821)
T ss_pred HHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc
Confidence 445556778999999999999999999888888899999999999999999999875321 22345666665321
Q ss_pred --cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEeecC
Q 016800 125 --RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 125 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.....+.+.++......... +..|++|||+|.+.. +.++.|...+.. +...+|.+|+.
T Consensus 249 g~~~~ge~e~rl~~i~~~~~~~----------~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~ 316 (821)
T CHL00095 249 GTKYRGEFEERLKRIFDEIQEN----------NNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTL 316 (821)
T ss_pred cCCCccHHHHHHHHHHHHHHhc----------CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCH
Confidence 12233444444443322111 456999999997742 356777777764 34567777765
Q ss_pred cc-----ccchhhhcccceEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcCC------CHHHHHHHHHH
Q 016800 195 IS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAITYLQG 259 (382)
Q Consensus 195 ~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~s~g------dlr~a~~~l~~ 259 (382)
.. ...+.+.+|++.+.++.++.++...+++.... ..++.++++++..++..++| -|++|+.+|+.
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~ 396 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDE 396 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHH
Confidence 32 35789999999999999999998888876543 24667899999999998864 38889999998
Q ss_pred HHHhc
Q 016800 260 AARLF 264 (382)
Q Consensus 260 ~~~~~ 264 (382)
++...
T Consensus 397 a~a~~ 401 (821)
T CHL00095 397 AGSRV 401 (821)
T ss_pred HHHHH
Confidence 87643
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.58 E-value=1.1e-13 Score=141.43 Aligned_cols=179 Identities=24% Similarity=0.346 Sum_probs=123.1
Q ss_pred CcccCcHHHHHHHHHHHHcC-------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++||+++++.+.+.+... ..| .++|+||+|+|||++|+++++.+++.. ..++.++++.......+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~---~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE---DAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc---cceEEEEchhccccccHH
Confidence 57889999999998887532 222 389999999999999999999997653 345666665432111111
Q ss_pred HHHHHHHHhhhc-CCCCC-----CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecC
Q 016800 132 TKIKTFAAVAVG-SGQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNY 194 (382)
Q Consensus 132 ~~l~~~~~~~~~-~~~~~-----~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~ 194 (382)
..+. .+.+ .+... ......++.||++||+|+++++.++.|++++|+. ..++.||+|+|.
T Consensus 586 ~l~g----~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 586 KLIG----SPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HhcC----CCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 1110 0000 00000 0001136789999999999999999999999974 257889999863
Q ss_pred ccc-------------------------------------cchhhhccc-ceEEecCCCHHHHHHHHHHHHHH-------
Q 016800 195 ISR-------------------------------------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE------- 229 (382)
Q Consensus 195 ~~~-------------------------------------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~------- 229 (382)
... ..|.+.+|+ .++.|.|++.+++.+++...+.+
T Consensus 662 g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~ 741 (821)
T CHL00095 662 GSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNE 741 (821)
T ss_pred chHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 211 225678898 58999999999999988776543
Q ss_pred hC--CCCCHHHHHHHHHhc
Q 016800 230 EG--LNLDAEALSTLSSIS 246 (382)
Q Consensus 230 ~~--~~~~~~~~~~l~~~s 246 (382)
.| +.+++++.+.|++.+
T Consensus 742 ~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 742 QGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred CCcEEEECHHHHHHHHHhc
Confidence 23 357899999998864
No 149
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-14 Score=138.31 Aligned_cols=229 Identities=20% Similarity=0.266 Sum_probs=148.0
Q ss_pred ccCCCCCchHHHHhhccccccCCchhhhhcCCCCC----------CcccCcHHHHHHHHHHHHcCC------CCcEEEeC
Q 016800 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV----------KDVAHQEEVVRVLTNTLETAN------CPHMLFYG 89 (382)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~----------~~~~g~~~~~~~l~~~l~~~~------~~~lll~G 89 (382)
....+..++-++.|++-.| .+..||-. +.+-.| +|-.|-+++++.+..++.-++ .+.++|+|
T Consensus 368 ~~le~~~sEfnvtrNYLdw-lt~LPWgk-~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~G 445 (906)
T KOG2004|consen 368 KLLEPSSSEFNVTRNYLDW-LTSLPWGK-SSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVG 445 (906)
T ss_pred hccCccccchhHHHHHHHH-HHhCCCCC-CChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeC
Confidence 3355666677777777666 47788854 322232 456688889999888886543 23489999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH
Q 016800 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169 (382)
Q Consensus 90 p~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~ 169 (382)
|||+|||++++.+|+.+ +..|+.+.-........++..-..+....++.-..--...+....+++|||+|++..
T Consensus 446 PPGVGKTSI~kSIA~AL------nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~ 519 (906)
T KOG2004|consen 446 PPGVGKTSIAKSIARAL------NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS 519 (906)
T ss_pred CCCCCcccHHHHHHHHh------CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC
Confidence 99999999999999998 455666665443333333322222111110000000000011556999999999963
Q ss_pred ----HHHHHHHHHHHh-------------cC--CceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHH---
Q 016800 170 ----DAQNALRRTMET-------------YS--KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC--- 227 (382)
Q Consensus 170 ----~~~~~Ll~~le~-------------~~--~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~--- 227 (382)
+-..+|+++|+- |- ..+.||+|+|..+.++++|+.|..+|+++.+..+|-.++..+.+
T Consensus 520 g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~ 599 (906)
T KOG2004|consen 520 GHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQ 599 (906)
T ss_pred CCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhH
Confidence 235677777751 11 35678889999999999999999999999999999877766543
Q ss_pred --HHh-----CCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 016800 228 --NEE-----GLNLDAEALSTLSSIS--QGDLRRAITYLQGAAR 262 (382)
Q Consensus 228 --~~~-----~~~~~~~~~~~l~~~s--~gdlr~a~~~l~~~~~ 262 (382)
++. .+.++++++..+++.. ..-+|.+-..+++.+.
T Consensus 600 a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 600 ALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 223 4568888887777543 2236666666665543
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=1.4e-13 Score=139.18 Aligned_cols=180 Identities=24% Similarity=0.308 Sum_probs=120.4
Q ss_pred CcccCcHHHHHHHHHHHHcC-------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++||+++++.+.+.+... ..| +++|+||+|||||++|+++++.+. ..++.++++.......+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~------~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG------VHLERFDMSEYMEKHTVS 527 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc------CCeEEEeCchhhhcccHH
Confidence 47889999999988887642 112 389999999999999999999883 345555554321111111
Q ss_pred HHHHHHHHhh-hc-CCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecCcc--
Q 016800 132 TKIKTFAAVA-VG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYIS-- 196 (382)
Q Consensus 132 ~~l~~~~~~~-~~-~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~~-- 196 (382)
..+....... .. .+.........++.||++||+++++++.++.|++++++. -.++.||+++|...
T Consensus 528 ~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~ 607 (731)
T TIGR02639 528 RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASE 607 (731)
T ss_pred HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhh
Confidence 1110000000 00 000000001126789999999999999999999999864 14577888886431
Q ss_pred -----------------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHHHHHHHH
Q 016800 197 -----------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAEALSTLS 243 (382)
Q Consensus 197 -----------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~~~l~ 243 (382)
.+.|.+.+|+. ++.|+|++.+++..++...+++ .| +.+++++++.|+
T Consensus 608 ~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La 687 (731)
T TIGR02639 608 MSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLA 687 (731)
T ss_pred hhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHH
Confidence 14567888987 8999999999999998886653 22 457899999998
Q ss_pred Hhc
Q 016800 244 SIS 246 (382)
Q Consensus 244 ~~s 246 (382)
+.+
T Consensus 688 ~~~ 690 (731)
T TIGR02639 688 EKG 690 (731)
T ss_pred HhC
Confidence 864
No 151
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-13 Score=127.16 Aligned_cols=199 Identities=21% Similarity=0.213 Sum_probs=131.9
Q ss_pred CCCCCcccCcHHHHHHHHHHH---H--------cCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTL---E--------TANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l---~--------~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
-.+|+|+-|-++++++|...+ + .|+.|. +|++||||||||.+|+++|-+. +.+|++..++..
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA------~VPFF~~sGSEF 373 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA------GVPFFYASGSEF 373 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc------CCCeEeccccch
Confidence 346999999999887776655 3 356666 9999999999999999999887 345555544432
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhcCC--c
Q 016800 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSK--V 185 (382)
Q Consensus 125 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~~~--~ 185 (382)
.+...+|+.+.. +... -+.||+|||+|... .+..|.|+--|+.+.. .
T Consensus 374 dEm~VGvGArRVRdLF~a----Ak~~----------APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAA----AKAR----------APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred hhhhhcccHHHHHHHHHH----HHhc----------CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc
Confidence 123344443332 2211 45799999999873 2235667766775543 4
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQGA 260 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~~~ 260 (382)
+++|.+||.++.+++++.+ |+. .+.++.|+..-..++|.....+ +.++++ ....|++-+.| +--++-|++..+
T Consensus 440 iIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 440 IIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred eEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHH
Confidence 5566678999999999987 565 7899999988888888877654 434433 25556765543 222333444455
Q ss_pred HHhc----CCCCChhhHhhhh
Q 016800 261 ARLF----GSSITSKDLISVS 277 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~ 277 (382)
+..+ ...+|+.+++-+-
T Consensus 518 AlkAa~dga~~VtM~~LE~ak 538 (752)
T KOG0734|consen 518 ALKAAVDGAEMVTMKHLEFAK 538 (752)
T ss_pred HHHHHhcCcccccHHHHhhhh
Confidence 5444 3567877776544
No 152
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.56 E-value=3.5e-13 Score=120.80 Aligned_cols=151 Identities=16% Similarity=0.233 Sum_probs=107.6
Q ss_pred CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 016800 81 NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (382)
Q Consensus 81 ~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (382)
+.|. ++||||||||||.+|+++++++ +..++.+++++.. +...+++.+..........
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~--------- 210 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKK--------- 210 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhcc---------
Confidence 3444 8999999999999999999998 3556667665321 2344555554433221111
Q ss_pred CCcEEEEEeCCCCCCHH-----------H-HHHHHHHHHhc--------------CCceEEEEeecCccccchhhhc--c
Q 016800 154 PPYKIIILDEADSMTED-----------A-QNALRRTMETY--------------SKVTRFFFICNYISRIIEPLAS--R 205 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~-----------~-~~~Ll~~le~~--------------~~~~~~Il~~~~~~~l~~~l~s--r 205 (382)
+...||+|||+|.+... . ...|+.+++.+ ...+.+|.+||.++.|+++|++ |
T Consensus 211 ~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGR 290 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGR 290 (413)
T ss_pred CCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCC
Confidence 15679999999977321 1 13566666542 3457788889999999999999 8
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 016800 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (382)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gd 249 (382)
+..+ +..|+.++..++++.+++..+ ++...+..|+....|-
T Consensus 291 fDk~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 291 MEKF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred CCce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 8764 457999999999998888765 5678888888888764
No 153
>PRK06526 transposase; Provisional
Probab=99.55 E-value=2.6e-15 Score=131.76 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=109.3
Q ss_pred CCccccccccCCCCCCCCcccccccccCCCCCchHHHHhhccccccCCchhhhhcCCCCCCcccCc-HHHHHHHH--HHH
Q 016800 1 MRANFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLT--NTL 77 (382)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~g~-~~~~~~l~--~~l 77 (382)
|.++++++...+..+.|++++++... ...|...++.++.-.....+++|+...+....|+...+. ...+..+. .|+
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~e~l~~l-l~~E~~~R~~~~~~~~lk~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~fi 95 (254)
T PRK06526 17 LAGAVERLAERARAESWSHEEFLAAC-LQREVAARESHGGEGRIRAARFPARKSLEEFDFDHQRSLKRDTIAHLGTLDFV 95 (254)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCCChhhccCccCCCcchHHHHHHhcCchh
Confidence 34677888889999999999999993 444444444444444444889999766666666655543 33333332 234
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcE
Q 016800 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (382)
Q Consensus 78 ~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 157 (382)
. ...+++|+||||+|||+++.+++..+...+ ..+..+... .+-+.+.......... .....+ .+..
T Consensus 96 ~--~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~~------~l~~~l~~~~~~~~~~-~~l~~l--~~~d 161 (254)
T PRK06526 96 T--GKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATAA------QWVARLAAAHHAGRLQ-AELVKL--GRYP 161 (254)
T ss_pred h--cCceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhHH------HHHHHHHHHHhcCcHH-HHHHHh--ccCC
Confidence 3 334799999999999999999999874332 122222221 1111111100000000 000001 1567
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 158 IIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 158 vliiDe~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
+|||||++..+ ...++.|+.+++.......+|+++|.+
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 99999999874 667788999998765555688888765
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.55 E-value=3.9e-13 Score=137.35 Aligned_cols=195 Identities=25% Similarity=0.363 Sum_probs=129.1
Q ss_pred CCCcccCcHHHHHHHHHHHHcC-------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~-------~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
-.+.++||+.++..+...+... ..| .++|+||+|||||++|+++++.+++.. ..++.++++.......
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~---~~~i~id~se~~~~~~ 642 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD---DAMVRIDMSEFMEKHS 642 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC---CcEEEEEhHHhhhhhh
Confidence 3567899999999888887642 222 389999999999999999999986543 3456676654321111
Q ss_pred HHHHHHHHHHhhhcC-CCCCC-----CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEee
Q 016800 130 VRTKIKTFAAVAVGS-GQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (382)
Q Consensus 130 ~~~~l~~~~~~~~~~-~~~~~-----~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~ 192 (382)
....+ ....+. +...+ .....++.||+|||++.++++.++.|++++++.. .++.||++|
T Consensus 643 ~~~Li----G~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 643 VSRLV----GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred HHHHh----CCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 11111 000000 00000 0001255799999999999999999999998752 355688888
Q ss_pred cCcc-------------------------ccchhhhccc-ceEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHH
Q 016800 193 NYIS-------------------------RIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAE 237 (382)
Q Consensus 193 ~~~~-------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~ 237 (382)
|... .+.+.+.+|+ .++.|.|++.+++..++...+.. .+ +.++++
T Consensus 719 N~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~ 798 (857)
T PRK10865 719 NLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDE 798 (857)
T ss_pred CcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHH
Confidence 7521 1346788999 58999999999999887775543 23 357999
Q ss_pred HHHHHHHhcCC---CHHHHHHHHHHH
Q 016800 238 ALSTLSSISQG---DLRRAITYLQGA 260 (382)
Q Consensus 238 ~~~~l~~~s~g---dlr~a~~~l~~~ 260 (382)
+++.|++.... ..|-+.+.++..
T Consensus 799 al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 799 ALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHHHHHHcCCCccCChHHHHHHHHHH
Confidence 99999886521 245555555543
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.55 E-value=2.4e-13 Score=139.38 Aligned_cols=194 Identities=25% Similarity=0.342 Sum_probs=133.9
Q ss_pred CcccCcHHHHHHHHHHHHcCC-------CC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETAN-------CP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-------~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++||+.+++.+...+...+ .| .++|+||+|||||++|+++++.+++.. ..++.++++.......+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~---~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE---DAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhhcccchHH
Confidence 568999999999988886531 12 389999999999999999999986543 456677765432211111
Q ss_pred HHHHHHHHhhhcC-CCCC-----CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecC
Q 016800 132 TKIKTFAAVAVGS-GQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (382)
Q Consensus 132 ~~l~~~~~~~~~~-~~~~-----~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~ 194 (382)
..+ ....+. +... ......++.||++||++.++++.++.|++++++.. .++.||++||.
T Consensus 642 ~l~----g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 642 RLI----GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred Hhc----CCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 111 000000 0000 00011256799999999999999999999998763 56779999876
Q ss_pred ccc-------------------------cchhhhcccc-eEEecCCCHHHHHHHHHHHHH-------HhC--CCCCHHHH
Q 016800 195 ISR-------------------------IIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEG--LNLDAEAL 239 (382)
Q Consensus 195 ~~~-------------------------l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~-------~~~--~~~~~~~~ 239 (382)
... ..+.+..|+. ++.|.|++.+++.+++..... ..+ +.++++++
T Consensus 718 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~ 797 (852)
T TIGR03346 718 GSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAAL 797 (852)
T ss_pred chHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHH
Confidence 221 2356677885 899999999999888766543 222 46899999
Q ss_pred HHHHHhc---CCCHHHHHHHHHHHH
Q 016800 240 STLSSIS---QGDLRRAITYLQGAA 261 (382)
Q Consensus 240 ~~l~~~s---~gdlr~a~~~l~~~~ 261 (382)
+.|++.. .++.|.+.+.++...
T Consensus 798 ~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 798 DFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHhCCCCCCCchhHHHHHHHHH
Confidence 9999874 477888888877655
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.54 E-value=7.8e-14 Score=110.95 Aligned_cols=113 Identities=29% Similarity=0.338 Sum_probs=82.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
+||+||||+|||++++.+++.+ +..++.+++.... ........+..+........ .+.|++||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA---------KPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS---------TSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc------ccccccccccccccccccccccccccccccccccc---------cceeeeec
Confidence 6899999999999999999997 4667888876532 11122222333332222110 25799999
Q ss_pred CCCCCCHHH-----------HHHHHHHHHhcCC---ceEEEEeecCccccchhhh-cccc-eEEec
Q 016800 163 EADSMTEDA-----------QNALRRTMETYSK---VTRFFFICNYISRIIEPLA-SRCA-KFRFK 212 (382)
Q Consensus 163 e~d~l~~~~-----------~~~Ll~~le~~~~---~~~~Il~~~~~~~l~~~l~-sr~~-~i~~~ 212 (382)
|+|.+.... .+.|+..++.... .+.+|++||..+.+.+++. +|+. .++|+
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred cchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 999997765 7889999987765 4789999999999999999 9988 56653
No 157
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.3e-13 Score=135.29 Aligned_cols=179 Identities=31% Similarity=0.432 Sum_probs=129.3
Q ss_pred CcccCcHHHHHHHHHHHHcC-------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++||++++..+.+.++.. +.| .+||.||+|+|||.+|+++|..+++.. ..++.+|+++......+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e---~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE---QALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC---ccceeechHHHHHHHHHH
Confidence 57889999999999888643 223 389999999999999999999997653 456778887653333332
Q ss_pred HHHHHHHHhhhcC------CCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecC
Q 016800 132 TKIKTFAAVAVGS------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (382)
Q Consensus 132 ~~l~~~~~~~~~~------~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~ 194 (382)
.+...+++- +.-+......+|.||++||+++.+++..|.|++.|++.. .+++||+|+|-
T Consensus 568 ----rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 568 ----RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred ----HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 222211110 001111223478899999999999999999999999653 57889999852
Q ss_pred cc----------------------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHHH-------HhCC--CCCH
Q 016800 195 IS----------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEGL--NLDA 236 (382)
Q Consensus 195 ~~----------------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~-------~~~~--~~~~ 236 (382)
-. ...|.+.+|.. +|.|.+++.+++.+++..... ..++ .+++
T Consensus 644 Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~ 723 (786)
T COG0542 644 GSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSD 723 (786)
T ss_pred chHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECH
Confidence 11 03467778888 999999999999888766443 2344 4789
Q ss_pred HHHHHHHHhc
Q 016800 237 EALSTLSSIS 246 (382)
Q Consensus 237 ~~~~~l~~~s 246 (382)
++.+.|++.+
T Consensus 724 ~a~~~l~~~g 733 (786)
T COG0542 724 EAKDFLAEKG 733 (786)
T ss_pred HHHHHHHHhc
Confidence 9999999876
No 158
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.54 E-value=3.8e-14 Score=141.76 Aligned_cols=207 Identities=28% Similarity=0.422 Sum_probs=156.9
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcC------------CC--Cc--EEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA------------NC--PH--MLFYGPPGTGKTTTALAIAHQLFGPEL 111 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~--~~--lll~Gp~G~GKt~la~~la~~l~~~~~ 111 (382)
...|.++|+|....++.|.......+.+|+... .. .. ++++||||+|||+.+...++.+
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 467999999999999999888777888887654 11 11 5899999999999999999987
Q ss_pred CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCC-CC---CCCCCCcEEEEEeCCCCCCHH---HHHHHHHHHHhcCC
Q 016800 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RG---GYPCPPYKIIILDEADSMTED---AQNALRRTMETYSK 184 (382)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~---~~~~~~~~vliiDe~d~l~~~---~~~~Ll~~le~~~~ 184 (382)
...+++.|+.+.++...+.+.+..+.......... .. .-..+...|||+||+|.|..+ ....+-.+++.-
T Consensus 382 -g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks-- 458 (871)
T KOG1968|consen 382 -GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKS-- 458 (871)
T ss_pred -ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHhc--
Confidence 57899999998876666555554433221111000 00 001124459999999999873 355666666633
Q ss_pred ceEEEEeecCcccc-chhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 185 VTRFFFICNYISRI-IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 185 ~~~~Il~~~~~~~l-~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
...+|++||..... .+++.+-|..++|..|+.+.+...+..+|..+++.++++.++.++..++||+|..++.++....
T Consensus 459 ~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 459 SRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSL 537 (871)
T ss_pred cCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhc
Confidence 33478888876554 3566667789999999999999999999999999999999999999999999999999997743
No 159
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.54 E-value=4.9e-13 Score=131.14 Aligned_cols=218 Identities=20% Similarity=0.232 Sum_probs=147.2
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHH
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 130 (382)
.+.+...+++++|+...++.+.+.++.. ...+++|+|++||||+++|+++...... ....++.+||..... ..+
T Consensus 188 ~~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r---~~~pfv~i~c~~~~~-~~~ 263 (534)
T TIGR01817 188 ARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR---AKRPFVKVNCAALSE-TLL 263 (534)
T ss_pred cccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeecCCCCH-HHH
Confidence 3455668999999988888777766543 2234999999999999999999986532 235788899976422 222
Q ss_pred HHHHHHHHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc--
Q 016800 131 RTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-- 195 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-- 195 (382)
...+-........+. ...+.+......+++|||++.|+...|..|+.++++.. ..+++|++++..
T Consensus 264 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~ 343 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLE 343 (534)
T ss_pred HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHH
Confidence 221100000000000 01122333456799999999999999999999998643 146788887643
Q ss_pred -----cccchhhhcccc--eEEecCCC--HHHHHHHHHHHHHH----hC--CCCCHHHHHHHHHhc-CCCHHHHHHHHHH
Q 016800 196 -----SRIIEPLASRCA--KFRFKPLS--EEVMSSRVLHICNE----EG--LNLDAEALSTLSSIS-QGDLRRAITYLQG 259 (382)
Q Consensus 196 -----~~l~~~l~sr~~--~i~~~~~~--~~~~~~~l~~~~~~----~~--~~~~~~~~~~l~~~s-~gdlr~a~~~l~~ 259 (382)
..+.+.+..|+. .+.++|+. .+++..++...+.+ .+ +.++++++..+..+. .||+|.+.+.++.
T Consensus 344 ~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~ 423 (534)
T TIGR01817 344 EAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLER 423 (534)
T ss_pred HHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 124455666665 57788887 46666555554432 23 568999999999886 9999999999998
Q ss_pred HHHhc-CCCCChhhHh
Q 016800 260 AARLF-GSSITSKDLI 274 (382)
Q Consensus 260 ~~~~~-~~~It~~~v~ 274 (382)
++... +..|+.+++.
T Consensus 424 a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 424 TATLSRSGTITRSDFS 439 (534)
T ss_pred HHHhCCCCcccHHHCc
Confidence 88665 4578877764
No 160
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.6e-13 Score=130.42 Aligned_cols=205 Identities=25% Similarity=0.259 Sum_probs=139.5
Q ss_pred CCCCCcccCcHHHHHHHHHHHH---c--------CCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLE---T--------ANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
+-.|+|+.|.++++..|+.++. + .++|. +||+||||||||.+|+++|.+. +.+|+.+++++.
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~svSGSEF 380 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSGSEF 380 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceeeechHHH
Confidence 4689999999999987776652 2 25566 9999999999999999999987 466777766542
Q ss_pred cch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH---------------HHHHHHHHHHHhc--CCc
Q 016800 125 RGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE---------------DAQNALRRTMETY--SKV 185 (382)
Q Consensus 125 ~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~---------------~~~~~Ll~~le~~--~~~ 185 (382)
... ..-...+..+...+... .+.+|+|||+|.... ...|.|+--|+.. ...
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~----------aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKN----------APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred HHHhcccchHHHHHHHHHhhcc----------CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 110 00012223333222211 457999999998742 1245666666643 345
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH-HHHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI-TYLQGAA 261 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~-~~l~~~~ 261 (382)
++++.+||.++.+++++.+ |+. .+..+.|+.....+++...+..-....++..+..++..+.|....-+ |++..++
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa 530 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAA 530 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHH
Confidence 6677778999999999987 555 78999999999999998877765554455566668888877665544 3344343
Q ss_pred Hhc----CCCCChhhHhhhh
Q 016800 262 RLF----GSSITSKDLISVS 277 (382)
Q Consensus 262 ~~~----~~~It~~~v~~~~ 277 (382)
..+ ...|+.+++..++
T Consensus 531 ~~a~r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 531 LLAARKGLREIGTKDLEYAI 550 (774)
T ss_pred HHHHHhccCccchhhHHHHH
Confidence 333 3567777766655
No 161
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=8.2e-13 Score=117.51 Aligned_cols=175 Identities=23% Similarity=0.276 Sum_probs=112.9
Q ss_pred CCCCcccCcHHHHHHHHHHH----------HcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 58 KQVKDVAHQEEVVRVLTNTL----------ETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l----------~~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
..|+|+.|..++++.|..++ +..+.|- +|++||||||||.+|++++.+. ...|+.+..+...
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstlt 282 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLT 282 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhh
Confidence 47899999999998887765 2233343 9999999999999999999986 3455555544321
Q ss_pred chHHHH----HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHHHhcC-----C
Q 016800 126 GINVVR----TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMETYS-----K 184 (382)
Q Consensus 126 ~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~Ll~~le~~~-----~ 184 (382)
..+| ..+.-++..+-.- -+.+|+|||+|.+.. ...+.|+-.|+.-. .
T Consensus 283 --SKwRGeSEKlvRlLFemARfy----------APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~ 350 (491)
T KOG0738|consen 283 --SKWRGESEKLVRLLFEMARFY----------APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENS 350 (491)
T ss_pred --hhhccchHHHHHHHHHHHHHh----------CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccc
Confidence 1111 1122222221111 335999999999832 24567777776322 2
Q ss_pred ceEEEEe-ecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHH
Q 016800 185 VTRFFFI-CNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRR 252 (382)
Q Consensus 185 ~~~~Il~-~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~gdlr~ 252 (382)
..+||++ ||-|-.|+.++++|+. .|.++-|+.+.....|+..+.. +..+ +-.++.|++.+.|--..
T Consensus 351 k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGa 419 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGA 419 (491)
T ss_pred eeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChH
Confidence 3455554 5788999999999998 7888777777777776554432 3233 33466777766554433
No 162
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.51 E-value=1.6e-12 Score=118.20 Aligned_cols=220 Identities=21% Similarity=0.220 Sum_probs=134.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-chHHHHHHH--
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-GINVVRTKI-- 134 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l-- 134 (382)
..|.+++||++++..|...+.+.+..+++|.|++|||||++++.+++.+.+........+..++.+.. .-...+...
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~ 93 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQN 93 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcc
Confidence 48899999999999999888888887899999999999999999988875322111110000000000 000000000
Q ss_pred --------------------------H---HHHHhhhcCCC-CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-
Q 016800 135 --------------------------K---TFAAVAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS- 183 (382)
Q Consensus 135 --------------------------~---~~~~~~~~~~~-~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~- 183 (382)
. --.....+... ..+.+......++++||++.+++..|..|+..|++..
T Consensus 94 ~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~ 173 (350)
T CHL00081 94 GETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWN 173 (350)
T ss_pred cccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCe
Confidence 0 00000000000 1222233456799999999999999999999998632
Q ss_pred ----------CceEEEEee--cCcc-ccchhhhcccc-eEEecCCCH-HHHHHHHHHHHH--------------------
Q 016800 184 ----------KVTRFFFIC--NYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN-------------------- 228 (382)
Q Consensus 184 ----------~~~~~Il~~--~~~~-~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~-------------------- 228 (382)
...+|++++ |..+ .+.+.+..|+. .+.+..++. ++-.+++.+...
T Consensus 174 ~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (350)
T CHL00081 174 TVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELR 253 (350)
T ss_pred EEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCH
Confidence 123344444 4333 58888999987 677877763 555555543211
Q ss_pred ---------HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 229 ---------EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 229 ---------~~~~~~~~~~~~~l~~~s---~-gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
-..+.++++.++++++.+ + -.+|..+.++..+...+ ...++.+||+.+.
T Consensus 254 ~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a 319 (350)
T CHL00081 254 SKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVI 319 (350)
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 024668888888777654 2 25787777766544433 3568888877665
No 163
>PRK08181 transposase; Validated
Probab=99.51 E-value=9e-15 Score=128.95 Aligned_cols=173 Identities=17% Similarity=0.270 Sum_probs=107.2
Q ss_pred CCccccccccCCCCCCCCccccccc--ccCCCCCchHHHHhhccccccCCchhhhhcCCCCCCcccC-cHHHHHHH---H
Q 016800 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVL---T 74 (382)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~g-~~~~~~~l---~ 74 (382)
|++++++....+..+.|++.+++.. ..+...+.++.+.+.+. .+++|....+.-..|+...+ .+.....+ .
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~e~L~~ll~~E~~~R~~~~~~r~lk---~A~~p~~~tle~fd~~~~~~~~~~~~~~L~~~~ 100 (269)
T PRK08181 24 IKTLWPQFAEQADKEGWPAARFLAAIAEHELAERARRRIERHLA---EAHLPPGKTLDSFDFEAVPMVSKAQVMAIAAGD 100 (269)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHhhCCccCCCCCCHHHHHHHHHHH
Confidence 3466778888888999999999999 33444455555555555 77888644343333333333 23333333 3
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH-----HHHHHhhhcCCCCCC
Q 016800 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-----KTFAAVAVGSGQRRG 149 (382)
Q Consensus 75 ~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~ 149 (382)
.|+..+ .+++|+||+|+|||+++.+++.++...+ ..+..++..+. ...+.... ...... .
T Consensus 101 ~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~~~~L--~~~l~~a~~~~~~~~~l~~-l------- 165 (269)
T PRK08181 101 SWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTRTTDL--VQKLQVARRELQLESAIAK-L------- 165 (269)
T ss_pred HHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcC---CceeeeeHHHH--HHHHHHHHhCCcHHHHHHH-H-------
Confidence 566543 3699999999999999999999885432 23444443221 11111100 000000 0
Q ss_pred CCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 150 GYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
.+..++||||++..+ ...++.|+.+++.......+|+++|.+
T Consensus 166 ----~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 ----DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ----hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 155799999998774 455678999998766666788888764
No 164
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.51 E-value=6.8e-13 Score=131.86 Aligned_cols=206 Identities=19% Similarity=0.156 Sum_probs=136.3
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEE
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~ 118 (382)
|.+......|+++.|.+..+..+...+.- +..| +++|+||||+|||+++++++.++. ..++.
T Consensus 142 ~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~------~~f~~ 215 (644)
T PRK10733 142 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFT 215 (644)
T ss_pred cCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCEEE
Confidence 33334456788999988888777665431 1223 499999999999999999999873 44566
Q ss_pred eecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHH
Q 016800 119 LNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRT 178 (382)
Q Consensus 119 ~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~ 178 (382)
+++.+.. +...++..+... ... .+.||+|||+|.+.. ...+.|+..
T Consensus 216 is~~~~~~~~~g~~~~~~~~~f~~a----~~~----------~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~ 281 (644)
T PRK10733 216 ISGSDFVEMFVGVGASRVRDMFEQA----KKA----------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE 281 (644)
T ss_pred EehHHhHHhhhcccHHHHHHHHHHH----Hhc----------CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHh
Confidence 6654321 122233332221 111 457999999998832 134566666
Q ss_pred HHhcC--CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC----C
Q 016800 179 METYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----D 249 (382)
Q Consensus 179 le~~~--~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g----d 249 (382)
|+... ..+.+|.+||.++.+++++.+ |+. .+.|+.|+.++..++++..++..... .+-.+..+++.+.| |
T Consensus 282 mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgad 360 (644)
T PRK10733 282 MDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGAD 360 (644)
T ss_pred hhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHH
Confidence 66543 356778889999999999986 775 89999999999999998877654332 12235567877766 6
Q ss_pred HHHHHHHHHHHHHhc-CCCCChhhHhhhh
Q 016800 250 LRRAITYLQGAARLF-GSSITSKDLISVS 277 (382)
Q Consensus 250 lr~a~~~l~~~~~~~-~~~It~~~v~~~~ 277 (382)
+..+++.....+... ...|+..++..+.
T Consensus 361 l~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 361 LANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 666666555433332 3568888877654
No 165
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7.8e-13 Score=120.60 Aligned_cols=151 Identities=15% Similarity=0.237 Sum_probs=108.3
Q ss_pred CCCCCCcccCcHHHHHHHHH----HHHc-------CCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 56 RPKQVKDVAHQEEVVRVLTN----TLET-------ANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~----~l~~-------~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+|.+|+-++-.++.++.+.+ +++. |+. ..+|||||||||||+++.|+|+.+ +.++..++-.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L------~ydIydLeLt 269 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL------NYDIYDLELT 269 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc------CCceEEeeec
Confidence 56788888877666655544 3332 222 139999999999999999999998 5666666665
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH------H------------HHHHHHHHHHhcC-
Q 016800 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------D------------AQNALRRTMETYS- 183 (382)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------~------------~~~~Ll~~le~~~- 183 (382)
......+++..+.... ++.||+|+|+|.--. + ....|+..++...
T Consensus 270 ~v~~n~dLr~LL~~t~----------------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwS 333 (457)
T KOG0743|consen 270 EVKLDSDLRHLLLATP----------------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWS 333 (457)
T ss_pred cccCcHHHHHHHHhCC----------------CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccc
Confidence 5444455555543321 556999999987511 1 1235888887543
Q ss_pred ---CceEEEEeecCccccchhhhcccc---eEEecCCCHHHHHHHHHHHHH
Q 016800 184 ---KVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICN 228 (382)
Q Consensus 184 ---~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~ 228 (382)
...++|||||..++++|+|.++.. .+++...+.+.++....+...
T Consensus 334 scg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 334 SCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 244789999999999999999554 799999999999998876653
No 166
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.49 E-value=8.4e-13 Score=123.50 Aligned_cols=173 Identities=21% Similarity=0.227 Sum_probs=108.1
Q ss_pred cccCcHHHHHHHHHHHHc-------C---------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 62 DVAHQEEVVRVLTNTLET-------A---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~-------~---------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.++||+++++.+...+.+ + ...++||+||||||||++|+++++.+. ..++.+++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------~pf~~id~~~l~ 145 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------VPFAIADATTLT 145 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC------CCceecchhhcc
Confidence 478999999988665521 1 124599999999999999999999873 344444443211
Q ss_pred ch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHhcC----
Q 016800 126 GI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETYS---- 183 (382)
Q Consensus 126 ~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~~~---- 183 (382)
.. ..+...+......... ......+.||+|||+|.++.. .|++|+++||...
T Consensus 146 ~~gyvG~d~e~~l~~l~~~~~~------~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~ 219 (412)
T PRK05342 146 EAGYVGEDVENILLKLLQAADY------DVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVP 219 (412)
T ss_pred cCCcccchHHHHHHHHHHhccc------cHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeC
Confidence 10 1122222222111100 000125679999999999753 7899999998421
Q ss_pred ---------CceEEEEeecC------------------------------c--------c--------------ccchhh
Q 016800 184 ---------KVTRFFFICNY------------------------------I--------S--------------RIIEPL 202 (382)
Q Consensus 184 ---------~~~~~Il~~~~------------------------------~--------~--------------~l~~~l 202 (382)
..+.+|.|+|- . . .+.|.+
T Consensus 220 ~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf 299 (412)
T PRK05342 220 PQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF 299 (412)
T ss_pred CCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH
Confidence 11222332221 0 0 035667
Q ss_pred hcccc-eEEecCCCHHHHHHHHHH----HH-------HHhCC--CCCHHHHHHHHHhc
Q 016800 203 ASRCA-KFRFKPLSEEVMSSRVLH----IC-------NEEGL--NLDAEALSTLSSIS 246 (382)
Q Consensus 203 ~sr~~-~i~~~~~~~~~~~~~l~~----~~-------~~~~~--~~~~~~~~~l~~~s 246 (382)
..|+. ++.|.+++.+++..++.. .. ...++ .+++++++.|++.+
T Consensus 300 lgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 300 IGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred hCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 77887 789999999999998872 22 23344 47999999999864
No 167
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.48 E-value=4e-12 Score=115.84 Aligned_cols=213 Identities=18% Similarity=0.204 Sum_probs=130.1
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-------CCCCCC---C--------------
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-------GPELYK---S-------------- 114 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~-------~~~~~~---~-------------- 114 (382)
.|..++||++++..+.-.+-.....|++|.|++|+|||+++++++..+- ++...+ .
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 5788999999998887777676677899999999999999999998761 111000 0
Q ss_pred ----------ceEEeec--C--CCcchHHHHHHHHHHHHhhhcCC-CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHH
Q 016800 115 ----------RVLELNA--S--DDRGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179 (382)
Q Consensus 115 ----------~~~~~~~--~--~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~l 179 (382)
.+..+.. . +..+...+...+.. +.. ...+.+......++++||++.+++..|+.|+..|
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~------g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l 155 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTE------GVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVA 155 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhc------CCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHH
Confidence 0000000 0 00011111111100 000 0112222335679999999999999999999999
Q ss_pred HhcC-----------CceEEEEe--ecCcc-ccchhhhcccc-eEEecCCCH-HHHHHHHHHHHH---------------
Q 016800 180 ETYS-----------KVTRFFFI--CNYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN--------------- 228 (382)
Q Consensus 180 e~~~-----------~~~~~Il~--~~~~~-~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~--------------- 228 (382)
++.. ...+|+++ .|..+ .+.+.+.+|+. .+.+.++.. ++..+++.....
T Consensus 156 ~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e 235 (337)
T TIGR02030 156 ASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTE 235 (337)
T ss_pred HhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhh
Confidence 8642 11233333 34333 57889999998 677777765 555555544211
Q ss_pred --------------HhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 229 --------------EEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 229 --------------~~~~~~~~~~~~~l~~~s---~g-dlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
-.++.++++.++++++.+ +. .+|..+.++..+...+ ...++.+||+.++
T Consensus 236 ~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a 306 (337)
T TIGR02030 236 QEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVA 306 (337)
T ss_pred hhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 024567888877777644 33 4787777766554443 3578888887765
No 168
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.48 E-value=2.6e-12 Score=117.57 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=134.0
Q ss_pred ccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHh
Q 016800 63 VAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (382)
++|+...++.+.+.+..- ...+++|+|++||||+++|+++...... ....++.+||.... ...+...+-.....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r---~~~pfv~vnc~~~~-~~~l~~~lfG~~~g 76 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR---WQGPLVKLNCAALS-ENLLDSELFGHEAG 76 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc---cCCCeEEEeCCCCC-hHHHHHHHhccccc
Confidence 356666665555554432 2224999999999999999999875421 23578889987542 22222211110000
Q ss_pred hhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------cccch
Q 016800 141 AVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRIIE 200 (382)
Q Consensus 141 ~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~l~~ 200 (382)
...+. ...+.+......+++|||++.|+.+.|..|+.++++.. ..+++|++++.. ..+.+
T Consensus 77 ~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~ 156 (329)
T TIGR02974 77 AFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRA 156 (329)
T ss_pred cccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHH
Confidence 00000 01122333456799999999999999999999998643 346788887643 23446
Q ss_pred hhhcccc--eEEecCCC--HHHHHHHHHHH----HHHhC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-CC
Q 016800 201 PLASRCA--KFRFKPLS--EEVMSSRVLHI----CNEEG----LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (382)
Q Consensus 201 ~l~sr~~--~i~~~~~~--~~~~~~~l~~~----~~~~~----~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~-~~ 266 (382)
.+..|+. .+.++|+. .+++..++... +.+.+ ..++++++..|..+. .||+|.+.+.++.++... +.
T Consensus 157 dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~ 236 (329)
T TIGR02974 157 DLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLE 236 (329)
T ss_pred HHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCC
Confidence 6777774 67888887 46666655443 33333 358999999999887 999999999999888765 34
Q ss_pred CCChhh
Q 016800 267 SITSKD 272 (382)
Q Consensus 267 ~It~~~ 272 (382)
.++.++
T Consensus 237 ~~~~~~ 242 (329)
T TIGR02974 237 EAPIDE 242 (329)
T ss_pred ccchhh
Confidence 455544
No 169
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.6e-12 Score=125.03 Aligned_cols=204 Identities=22% Similarity=0.239 Sum_probs=135.4
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|.++.|.+.....+...+.. + +.+ .+|||||||||||.+|++++.+. +..++.+..++.
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l 312 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSEL 312 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHH
Confidence 4778888888777776665521 1 223 39999999999999999999976 466777777643
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH--hcCCceEEE
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME--TYSKVTRFF 189 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le--~~~~~~~~I 189 (382)
.+ +......+......+... ...||+|||+|.+. ....+.|+..++ +....+.+|
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~----------~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKL----------APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred hccccchHHHHHHHHHHHHHcC----------CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 22 222223333333322211 45799999999882 245677777775 444566678
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHhcCCC-HHHHHHHHHHHHHhc
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGD-LRRAITYLQGAARLF 264 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~s~gd-lr~a~~~l~~~~~~~ 264 (382)
.+||.++.+++++.+ |+. .+.|++|+.++..++++......+..+ ++-.+..+++.+.|- -.++..+++.++..+
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~ 462 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEA 462 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 889999999999999 887 899999999999999998887655542 345567777766542 233333444443332
Q ss_pred -----CCCCChhhHhhhh
Q 016800 265 -----GSSITSKDLISVS 277 (382)
Q Consensus 265 -----~~~It~~~v~~~~ 277 (382)
...|+.+++..+.
T Consensus 463 ~~~~~~~~~~~~~~~~a~ 480 (494)
T COG0464 463 LREARRREVTLDDFLDAL 480 (494)
T ss_pred HHHhccCCccHHHHHHHH
Confidence 1245555554444
No 170
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.1e-12 Score=107.60 Aligned_cols=158 Identities=22% Similarity=0.319 Sum_probs=108.3
Q ss_pred cCCC-CCCcccCcHHHHHHHHHHHHcC------------CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 55 YRPK-QVKDVAHQEEVVRVLTNTLETA------------NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 55 ~~p~-~~~~~~g~~~~~~~l~~~l~~~------------~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
-+|. +..|+-|.+-.++.++..++-. .+| .+|+|||||||||.+++++++.. ...|+.+.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t------~a~firvv 221 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVV 221 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc------chheeeec
Confidence 3453 6678878777777776665421 223 39999999999999999999875 34566666
Q ss_pred cCCC------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh--
Q 016800 121 ASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET-- 181 (382)
Q Consensus 121 ~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~-- 181 (382)
++.. .+..-+++.+.- ... +.+.+++|||+|.+. .+.|..|+.++..
T Consensus 222 gsefvqkylgegprmvrdvfrl----ake----------napsiifideidaiatkrfdaqtgadrevqril~ellnqmd 287 (408)
T KOG0727|consen 222 GSEFVQKYLGEGPRMVRDVFRL----AKE----------NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMD 287 (408)
T ss_pred cHHHHHHHhccCcHHHHHHHHH----Hhc----------cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhcc
Confidence 5531 122233332221 111 145699999999873 3456677777653
Q ss_pred ---cCCceEEEEeecCccccchhhhccc--c-eEEecCCCHHHHHHHHHHHHHHhCC
Q 016800 182 ---YSKVTRFFFICNYISRIIEPLASRC--A-KFRFKPLSEEVMSSRVLHICNEEGL 232 (382)
Q Consensus 182 ---~~~~~~~Il~~~~~~~l~~~l~sr~--~-~i~~~~~~~~~~~~~l~~~~~~~~~ 232 (382)
...++.+|+.||..+.+.|++.+-. . .++|+.++..+-+-.+..+..+.+.
T Consensus 288 gfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l 344 (408)
T KOG0727|consen 288 GFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL 344 (408)
T ss_pred CcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC
Confidence 3457889999999999999998744 3 7999988888888777777766554
No 171
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.4e-13 Score=115.93 Aligned_cols=225 Identities=21% Similarity=0.242 Sum_probs=132.5
Q ss_pred CCCcccCcHHHHHHHHHHH----------HcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 59 QVKDVAHQEEVVRVLTNTL----------ETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l----------~~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
.|+|+.|.+.+++.|...+ ..++.|- +|+||||||||+-+|++++.+. +..|+.+..++..+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVS 204 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHH
Confidence 7899999999999888765 2334443 9999999999999999999997 45667776665321
Q ss_pred h--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-------HH----HHHHHHHHHh---cCCceEEEE
Q 016800 127 I--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------DA----QNALRRTMET---YSKVTRFFF 190 (382)
Q Consensus 127 ~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-------~~----~~~Ll~~le~---~~~~~~~Il 190 (382)
. ..-...++.++..+... ++.||+|||+|.+.. ++ ...|+--|.. ....+.++-
T Consensus 205 KWmGESEkLVknLFemARe~----------kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMAREN----------KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred HHhccHHHHHHHHHHHHHhc----------CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 1 11123344444433322 667999999998831 11 1233333332 234455566
Q ss_pred eecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CCC
Q 016800 191 ICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSS 267 (382)
Q Consensus 191 ~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~--~~~ 267 (382)
+||-+-.+..+|++|+. .|.++-|.........+-.+-...-.+++..+..|++.+.|--..-+.++-.-+... .+.
T Consensus 275 ATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred cCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 67888999999999998 666655544433333322111111236888899999887664332222222222111 112
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHH
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDL 299 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
-+.-+.+.+.+-+.+..+..++.-+..++...
T Consensus 355 qsAthFk~v~~~s~~~~~~~lltpcspgd~ga 386 (439)
T KOG0739|consen 355 QSATHFKKVSGPSNPSEVDDLLTPCSPGDPGA 386 (439)
T ss_pred hhhhhhhccCCCCChhhhccccCCCCCCCcch
Confidence 23344455555444444555555555565554
No 172
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.46 E-value=2.9e-12 Score=103.64 Aligned_cols=137 Identities=35% Similarity=0.397 Sum_probs=94.2
Q ss_pred cCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH----HHHH
Q 016800 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK----TFAA 139 (382)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~ 139 (382)
+|++..+..+...+......+++++||+|+|||++++.+++.+... ...++.+++.............. ....
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHFLVRLLF 77 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhhHHHHHhhhhhHhHHH
Confidence 3677888888888877655679999999999999999999987422 24556666554322222111111 0000
Q ss_pred hhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc------CCceEEEEeecCcc--ccchhhhccc-ceEE
Q 016800 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------SKVTRFFFICNYIS--RIIEPLASRC-AKFR 210 (382)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~------~~~~~~Il~~~~~~--~l~~~l~sr~-~~i~ 210 (382)
.... ..+..++++||++.+.......++..++.. ...+.+|++++... .+.+.+.+|+ ..+.
T Consensus 78 ~~~~---------~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~ 148 (151)
T cd00009 78 ELAE---------KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIV 148 (151)
T ss_pred Hhhc---------cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEee
Confidence 0000 115679999999999888888888888875 35677888888766 7888999999 4666
Q ss_pred ec
Q 016800 211 FK 212 (382)
Q Consensus 211 ~~ 212 (382)
++
T Consensus 149 ~~ 150 (151)
T cd00009 149 IP 150 (151)
T ss_pred cC
Confidence 64
No 173
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.4e-12 Score=116.74 Aligned_cols=156 Identities=23% Similarity=0.226 Sum_probs=108.1
Q ss_pred CCCcccCcHHHHHHHHHHHHc--------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc--hH
Q 016800 59 QVKDVAHQEEVVRVLTNTLET--------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--IN 128 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~ 128 (382)
.|++++.++...+.+.++... +...+++||||||||||.+|+.+++.- ..++.-+.+.|..+ .+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S------GlDYA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS------GLDYAIMTGGDVAPLGAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc------CCceehhcCCCccccchH
Confidence 388999999888888776532 233459999999999999999999875 33444344444322 22
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---------CHH---HHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TED---AQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~---~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
-+-. +..++.....+ .+.-+++|||+|.+ +.+ +.|+|+----+.+...++++.+|.|.
T Consensus 427 aVTk-iH~lFDWakkS---------~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 427 AVTK-IHKLFDWAKKS---------RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HHHH-HHHHHHHHhhc---------ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 2222 22222221111 14569999999865 222 34555544445567788899999999
Q ss_pred ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHh
Q 016800 197 RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE 230 (382)
Q Consensus 197 ~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~ 230 (382)
.++.++-.|+. +++|+.|..+|...+|..++.+.
T Consensus 497 dlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 497 DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 99999999998 89999999999999988777653
No 174
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.46 E-value=8.8e-13 Score=115.58 Aligned_cols=188 Identities=21% Similarity=0.297 Sum_probs=108.5
Q ss_pred ccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH---------
Q 016800 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK--------- 133 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 133 (382)
++|+++.++.|.+++..+...+++++||.|+|||++++.+.+.+...+. ..+.++.............
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 5799999999999999887777999999999999999999998732221 1222222222221111111
Q ss_pred HHHHHHhhhcCCC----------C-CCCC--------CCCCcEEEEEeCCCCCC------HHHHHHHHHHHHh--cCCce
Q 016800 134 IKTFAAVAVGSGQ----------R-RGGY--------PCPPYKIIILDEADSMT------EDAQNALRRTMET--YSKVT 186 (382)
Q Consensus 134 l~~~~~~~~~~~~----------~-~~~~--------~~~~~~vliiDe~d~l~------~~~~~~Ll~~le~--~~~~~ 186 (382)
+............ . .... ..+..-+|+|||++.+. ......|..+++. ...+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 0010111000000 0 0000 01134799999999988 4556777788776 23455
Q ss_pred EEEEeecCcc------ccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHhcCCCHHHHH
Q 016800 187 RFFFICNYIS------RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL--DAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 187 ~~Il~~~~~~------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~s~gdlr~a~ 254 (382)
.+|+++.... .-..++..|+..+.+++++.++..+++...+... ..+ +++.++.+...+||+|+.+.
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 5666654321 1234567788889999999999999999887665 544 99999999999999999753
No 175
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.45 E-value=1.1e-11 Score=116.17 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=119.1
Q ss_pred CcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-----CCcchHHHHHHH-
Q 016800 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-----DDRGINVVRTKI- 134 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l- 134 (382)
+.++|++++++.+...+..+. |+||+||||||||++|+++++...... .+....+. +..+...+....
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp~DLfG~l~i~~~~~ 93 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTPEEVFGPLSIQALKD 93 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCcHHhcCcHHHhhhhh
Confidence 468899999999988887765 799999999999999999999763221 11212211 111111111100
Q ss_pred -HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---------CceEEEEee-cCcc---ccch
Q 016800 135 -KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---------KVTRFFFIC-NYIS---RIIE 200 (382)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------~~~~~Il~~-~~~~---~l~~ 200 (382)
..|... ..+.+. ...++++||+.++++..++.|+..|++.. -..+|++++ |+.. ...+
T Consensus 94 ~g~f~r~------~~G~L~--~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~le 165 (498)
T PRK13531 94 EGRYQRL------TSGYLP--EAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLE 165 (498)
T ss_pred cCchhhh------cCCccc--cccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchH
Confidence 000000 001111 23499999999999999999999997543 123454444 4321 2334
Q ss_pred hhhcccc-eEEecCCC-HHHHHHHHHHHHH-----------------------HhCCCCCHHHHHHHHHhc------C--
Q 016800 201 PLASRCA-KFRFKPLS-EEVMSSRVLHICN-----------------------EEGLNLDAEALSTLSSIS------Q-- 247 (382)
Q Consensus 201 ~l~sr~~-~i~~~~~~-~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~l~~~s------~-- 247 (382)
++..|+. .+.+++++ .++..++|..... -..+.+++...++|.+.. .
T Consensus 166 AL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~ 245 (498)
T PRK13531 166 ALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNA 245 (498)
T ss_pred HhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCC
Confidence 7888886 67888886 4555666654211 023456677766666543 1
Q ss_pred --CCHHHHHHHHHHHHHhc----CCCCChhhHh
Q 016800 248 --GDLRRAITYLQGAARLF----GSSITSKDLI 274 (382)
Q Consensus 248 --gdlr~a~~~l~~~~~~~----~~~It~~~v~ 274 (382)
-++|..+.++..+...+ ...++.+||.
T Consensus 246 ~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 246 PYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred CCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 35676666554333222 3567777776
No 176
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.45 E-value=6.7e-12 Score=114.98 Aligned_cols=210 Identities=18% Similarity=0.187 Sum_probs=136.9
Q ss_pred CCCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
.+++++|....++.+.+.+..-. ..+++|+|++||||+++|+++..... .....++.++|.... ...+...+-.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~---r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC---ccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 35688998877777766665432 22499999999999999999986431 123578889988642 2222222111
Q ss_pred HHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------c
Q 016800 137 FAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (382)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~ 196 (382)
.......+. ...+.+......+++|||++.|+...|..|+.++++.. .++++|++++.. .
T Consensus 80 ~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g 159 (326)
T PRK11608 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEG 159 (326)
T ss_pred ccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcC
Confidence 000000000 01122233355789999999999999999999998632 246788877643 2
Q ss_pred ccchhhhcccc--eEEecCCCH--HHHHHHHHHH----HHHhC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 016800 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEG----LNLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (382)
Q Consensus 197 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~----~~~~~----~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~ 263 (382)
.+.+.+..|+. .+.++|+.. +++..++... +.+.+ ..++++++..+..+. .||+|.+.+.++.++..
T Consensus 160 ~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 160 KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 34566777764 678888765 4665555443 43433 257999999988876 89999999999988765
Q ss_pred c-CCCCChhh
Q 016800 264 F-GSSITSKD 272 (382)
Q Consensus 264 ~-~~~It~~~ 272 (382)
+ +..|+.++
T Consensus 240 ~~~~~~~~~~ 249 (326)
T PRK11608 240 HGTSEYPLDN 249 (326)
T ss_pred cCCCCCchhh
Confidence 4 34455444
No 177
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.45 E-value=3.4e-12 Score=129.62 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=120.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+++.|.++.++.+..++... ...++||+||||||||++++++++.+ ...++.+++.+.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i 248 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEI 248 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHH
Confidence 58899999999999888877421 12249999999999999999999987 344566665432
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhcC--CceEEE
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS--KVTRFF 189 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~~--~~~~~I 189 (382)
.. .......+..+....... ...+|+|||+|.+. ...++.|+..++... ..+.+|
T Consensus 249 ~~~~~g~~~~~l~~lf~~a~~~----------~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 249 MSKYYGESEERLREIFKEAEEN----------APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred hcccccHHHHHHHHHHHHHHhc----------CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 11 111112222222222111 44699999998874 234677888887643 345566
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHH
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRR 252 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~gdlr~ 252 (382)
.++|.+..+.+.+++ |+. .+.|+.|+.++..++++.... +..+. +..+..+++.+.|-...
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCHH
Confidence 678888999999887 665 789999999999999985544 33333 34577888888775444
No 178
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.9e-11 Score=111.58 Aligned_cols=208 Identities=17% Similarity=0.229 Sum_probs=136.9
Q ss_pred hhhcCCCCCCcccCcHHHHHHHHHHHHcC----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch
Q 016800 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETA----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (382)
Q Consensus 52 ~~k~~p~~~~~~~g~~~~~~~l~~~l~~~----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (382)
...+.| ..+.|++..+..+..|+... ....+.+.|.||+|||.+...+...+.+.. .....+++|+......
T Consensus 144 ~~t~~p---~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 144 LNTAPP---GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEA 219 (529)
T ss_pred HhcCCC---CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccch
Confidence 334455 45678888888888887543 333499999999999999998888764432 2245678888753222
Q ss_pred HH-HHHHHHHHHHhhhcCCCC-------CCCCC-CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-CceE--EEEeecCc
Q 016800 128 NV-VRTKIKTFAAVAVGSGQR-------RGGYP-CPPYKIIILDEADSMTEDAQNALRRTMETYS-KVTR--FFFICNYI 195 (382)
Q Consensus 128 ~~-~~~~l~~~~~~~~~~~~~-------~~~~~-~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-~~~~--~Il~~~~~ 195 (382)
.. .......+.+...+.+.. ...+. ....-++++||.|.+-...+..|+.+++.+. .+.+ +|.++|..
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhh
Confidence 22 222222221111111100 00000 1135689999999999888889999988764 2334 44455654
Q ss_pred ---cccchhhhcccc----eEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhc---CCCHHHHHHHHHHHHHh
Q 016800 196 ---SRIIEPLASRCA----KFRFKPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSIS---QGDLRRAITYLQGAARL 263 (382)
Q Consensus 196 ---~~l~~~l~sr~~----~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~s---~gdlr~a~~~l~~~~~~ 263 (382)
++.++.|..|+. .+.|+|++.+++.++|..+...+... +-+.+++.+|+.+ .||+|+|+..++.+...
T Consensus 300 DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI 378 (529)
T KOG2227|consen 300 DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEI 378 (529)
T ss_pred hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 457788887654 89999999999999999988876543 4455777777643 79999999999866544
No 179
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.9e-12 Score=113.78 Aligned_cols=188 Identities=24% Similarity=0.285 Sum_probs=123.1
Q ss_pred CCCCcccCcHHHHHHHHHHHH----------cC---CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE----------TA---NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~----------~~---~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
-+|+|+-|-+.+++.+...+- .+ +.+ ++|++||||||||.+|++++++.. ..++.+..+.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag------a~fInv~~s~ 162 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG------ANFINVSVSN 162 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC------CCcceeeccc
Confidence 478899999999988877662 11 222 399999999999999999999973 3444444443
Q ss_pred Ccc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-------HHH----HHHHHHHHHhc----CCce
Q 016800 124 DRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-------EDA----QNALRRTMETY----SKVT 186 (382)
Q Consensus 124 ~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-------~~~----~~~Ll~~le~~----~~~~ 186 (382)
..+ ...-....+..+..+..- .+.+++|||+|.+. .++ .+.|.-+.+.. ...+
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl----------~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rV 232 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKL----------QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERV 232 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhc----------CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceE
Confidence 221 111112222222211111 55799999999874 111 23444444322 2234
Q ss_pred EEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
.++.+||.|..+++++.+|.. .++++-|+..+..++|+-+.+.+.+. ++=.+..++..+.|--..=+.++...+.
T Consensus 233 lVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa 308 (386)
T KOG0737|consen 233 LVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAA 308 (386)
T ss_pred EEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 444457999999999999976 89999999999999999999888864 3334778888887765554544444444
No 180
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.2e-12 Score=123.81 Aligned_cols=171 Identities=23% Similarity=0.276 Sum_probs=115.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHc----------C-C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET----------A-N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~----------~-~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (382)
.+|+|+-|-++++..+..-++. | + ...+|||||||||||-+|+++|.+. +..|+.+.+++.
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc------sL~FlSVKGPELL 742 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC------SLNFLSVKGPELL 742 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc------eeeEEeecCHHHH
Confidence 4789999999999999877754 2 2 2349999999999999999999987 567777766542
Q ss_pred -----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH-------------HHHHHHHHHHhcC---
Q 016800 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-------------AQNALRRTMETYS--- 183 (382)
Q Consensus 125 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-------------~~~~Ll~~le~~~--- 183 (382)
.+...+|+.+..... +.+.||++||+|.+.+. ....|+.-|+.-+
T Consensus 743 NMYVGqSE~NVR~VFerAR~--------------A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~ 808 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARS--------------AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS 808 (953)
T ss_pred HHHhcchHHHHHHHHHHhhc--------------cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC
Confidence 223445554444221 26789999999999542 3455666666433
Q ss_pred -CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCC
Q 016800 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGD 249 (382)
Q Consensus 184 -~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gd 249 (382)
..+-+|-+||.|+.+++++.+ |++ .+.+.+...++-+..+.+... ....+++++ +..|++.+.-+
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT-rkFkLdedVdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT-RKFKLDEDVDLVEIAKKCPPN 878 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHH-HHccCCCCcCHHHHHhhCCcC
Confidence 344455567999999999987 666 567777766665554433222 233455443 66777766433
No 181
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.44 E-value=1.5e-11 Score=117.23 Aligned_cols=201 Identities=21% Similarity=0.243 Sum_probs=135.5
Q ss_pred ccCcHHHHHHHHHHHHcC-----CCCcEEEeCCCCCCHHHHHHHHHHHhcC----CCCCCCceEEeecCCCcchHHHHHH
Q 016800 63 VAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFG----PELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~-----~~~~lll~Gp~G~GKt~la~~la~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+.+++.....+..+++.. ....+.++|-||||||++++.+.+.+.. .....+.++++|+-...+..++...
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 346666666666666532 2223899999999999999999997751 2234567889998654444433332
Q ss_pred HHHHHHhhhcCC---------CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---CceEEEEeecCcc---c-
Q 016800 134 IKTFAAVAVGSG---------QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---KVTRFFFICNYIS---R- 197 (382)
Q Consensus 134 l~~~~~~~~~~~---------~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---~~~~~Il~~~~~~---~- 197 (382)
|-.......... ......+.....||+|||.|.|-...|..|..++++|. ...++|.++|..+ +
T Consensus 478 I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~ 557 (767)
T KOG1514|consen 478 IWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERL 557 (767)
T ss_pred HHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHH
Confidence 222110000000 00011123366799999999998888999999999875 2344555666543 3
Q ss_pred cchhhhcccc--eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHhc
Q 016800 198 IIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI---SQGDLRRAITYLQGAARLF 264 (382)
Q Consensus 198 l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---s~gdlr~a~~~l~~~~~~~ 264 (382)
+...+.||.. .+.|.|++.+++.+++..+++.- ..++.++++.+++. ..||.|+|+..+..++..+
T Consensus 558 l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 558 LMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIA 628 (767)
T ss_pred hccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3346667765 89999999999999998877654 34778888877754 4799999999999888665
No 182
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.43 E-value=4.7e-12 Score=116.10 Aligned_cols=204 Identities=19% Similarity=0.200 Sum_probs=137.5
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
..+.+++|.....+.+.+.++.-.. .++|++|++||||+.+|+.+...- .......++.+||.....--...+ +-
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s--~r~~~~PFI~~NCa~~~en~~~~e-LF 151 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALS--ARRAEAPFIAFNCAAYSENLQEAE-LF 151 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhh--hcccCCCEEEEEHHHhCcCHHHHH-Hh
Confidence 4678999988777777766665322 239999999999999999999432 222467899999986533222212 11
Q ss_pred HHHHhhhcC--CCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----------cCCceEEEEeecC--ccccch
Q 016800 136 TFAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET-----------YSKVTRFFFICNY--ISRIIE 200 (382)
Q Consensus 136 ~~~~~~~~~--~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~-----------~~~~~~~Il~~~~--~~~l~~ 200 (382)
........+ ....+-++..+...+++||++.|++..|..|+.+||+ .+.++++|++|+. ...+.+
T Consensus 152 G~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~ 231 (403)
T COG1221 152 GHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLA 231 (403)
T ss_pred ccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHh
Confidence 111111111 1133444556778999999999999999999999997 3456778887754 345555
Q ss_pred --hhhcccc--eEEecCCCH--HHHHH----HHHHHHHHhCCCC---CHHHHHHHHHh-cCCCHHHHHHHHHHHHHhc
Q 016800 201 --PLASRCA--KFRFKPLSE--EVMSS----RVLHICNEEGLNL---DAEALSTLSSI-SQGDLRRAITYLQGAARLF 264 (382)
Q Consensus 201 --~l~sr~~--~i~~~~~~~--~~~~~----~l~~~~~~~~~~~---~~~~~~~l~~~-s~gdlr~a~~~l~~~~~~~ 264 (382)
++..|+. .|.++|+.+ +|+.. ++...+.+.+.++ +++++..+..+ ..||+|.+.|.++.++...
T Consensus 232 g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 232 GADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 6766554 677777765 34444 3444555555543 34677777665 4899999999999988765
No 183
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.43 E-value=1e-11 Score=119.90 Aligned_cols=215 Identities=17% Similarity=0.160 Sum_probs=140.9
Q ss_pred CCCCcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
..|++++|+...++.+.+.++. ....+++|+|++||||+.+|+.+...-. ..+.+++.+||.... ...+...+-
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~---r~~~pfv~inC~~l~-e~lleseLF 284 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSG---RRDFPFVAINCGAIA-ESLLEAELF 284 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcC---cCCCCEEEeccccCC-hhHHHHHhc
Confidence 5788999998888877777753 2233599999999999999999987542 124578889997642 222222221
Q ss_pred HHHHhhhcCC---CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-----
Q 016800 136 TFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS----- 196 (382)
Q Consensus 136 ~~~~~~~~~~---~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~----- 196 (382)
........+. ...+.++......++|||++.|+.+.|..|++.+++.. ..+++|++++...
T Consensus 285 G~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~ 364 (526)
T TIGR02329 285 GYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQ 364 (526)
T ss_pred CCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhh
Confidence 1110010000 01122233456799999999999999999999998643 2347888876532
Q ss_pred --ccchhhhcccc--eEEecCCCH--HHHHHHHHHHH----HHhCCCCCHHHHHH-------HHHhc-CCCHHHHHHHHH
Q 016800 197 --RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEGLNLDAEALST-------LSSIS-QGDLRRAITYLQ 258 (382)
Q Consensus 197 --~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~----~~~~~~~~~~~~~~-------l~~~s-~gdlr~a~~~l~ 258 (382)
.+.+.+-.|.. .+.++|+.+ +++..++...+ ...++.++++++.. +..+. .||+|.+.+.++
T Consensus 365 ~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvie 444 (526)
T TIGR02329 365 QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVE 444 (526)
T ss_pred hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHH
Confidence 22334444553 678888765 56655544443 34466789998876 65554 899999999999
Q ss_pred HHHHhc----CCCCChhhHhhh
Q 016800 259 GAARLF----GSSITSKDLISV 276 (382)
Q Consensus 259 ~~~~~~----~~~It~~~v~~~ 276 (382)
.++... +..|+.+++...
T Consensus 445 r~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 445 RLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHhcccCCCCccCHHHhhhh
Confidence 988653 356887776443
No 184
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.42 E-value=2e-11 Score=105.21 Aligned_cols=120 Identities=23% Similarity=0.309 Sum_probs=98.4
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec------------CccccchhhhcccceEEecCCCHHHHHHHH
Q 016800 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 156 ~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
+.|++|||+|.+.-+....|-+.+|+--.. .+|+.+| +++.++-.+..|..++...|++.++++++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 469999999999999999999999975443 3455553 355688899999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc----CCCCChhhHhhh
Q 016800 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISV 276 (382)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~ 276 (382)
..+|..+++.+++++++.+.... ..++|.+++++....... +..+..++++++
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~ 425 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERV 425 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHH
Confidence 99999999999999999998765 568999999987665443 455666666554
No 185
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.42 E-value=3.2e-11 Score=117.40 Aligned_cols=213 Identities=20% Similarity=0.222 Sum_probs=139.8
Q ss_pred CCCCCcccCcHHHHHHHHHHHHc-C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLET-A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
...|++++|....++.+...++. . ...+++|+|++||||+++|+++..... .....++.+||.... .+.+...+
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~---r~~~pfv~inca~~~-~~~~e~el 275 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP---RGKKPFLALNCASIP-DDVVESEL 275 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC---CCCCCeEEeccccCC-HHHHHHHh
Confidence 45899999998777666655542 2 223499999999999999999876532 123567889987643 22222211
Q ss_pred HHHHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-----
Q 016800 135 KTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS----- 196 (382)
Q Consensus 135 ~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~----- 196 (382)
-........+. ...+.++......|+|||++.|+...|..|+.++++.. ..+++|++|+..-
T Consensus 276 FG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~ 355 (520)
T PRK10820 276 FGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 355 (520)
T ss_pred cCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 10000000000 01111223356789999999999999999999998632 2457888775431
Q ss_pred --ccchhhhcccc--eEEecCCCH--HHHHHH----HHHHHHHhCC---CCCHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 016800 197 --RIIEPLASRCA--KFRFKPLSE--EVMSSR----VLHICNEEGL---NLDAEALSTLSSI-SQGDLRRAITYLQGAAR 262 (382)
Q Consensus 197 --~l~~~l~sr~~--~i~~~~~~~--~~~~~~----l~~~~~~~~~---~~~~~~~~~l~~~-s~gdlr~a~~~l~~~~~ 262 (382)
.+.+.+..|.. .+.++|+.+ +++..+ +.+.+.+.|. .++++++..|..+ ..||+|.+.+.+..+..
T Consensus 356 ~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 356 KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 23455667754 677777765 455543 4444555543 5899999999888 69999999999998887
Q ss_pred hc-CCCCChhhH
Q 016800 263 LF-GSSITSKDL 273 (382)
Q Consensus 263 ~~-~~~It~~~v 273 (382)
.. +..|+.+++
T Consensus 436 ~~~~~~i~~~~~ 447 (520)
T PRK10820 436 QLEGYELRPQDI 447 (520)
T ss_pred hCCCCcccHHHc
Confidence 65 457887775
No 186
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.42 E-value=9.1e-12 Score=124.91 Aligned_cols=212 Identities=17% Similarity=0.136 Sum_probs=140.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
.+|++++|....++.+.+.++.. ...+++|+|++||||+++|+++.+.... ....++.+||.... .+.+...+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r---~~~pfv~vnc~~~~-~~~~~~el- 396 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER---AAGPYIAVNCQLYP-DEALAEEF- 396 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc---cCCCeEEEECCCCC-hHHHHHHh-
Confidence 47899999887776665555432 2224999999999999999999886522 23578889987653 22222211
Q ss_pred HHHHhhhc--CCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc------
Q 016800 136 TFAAVAVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------ 196 (382)
Q Consensus 136 ~~~~~~~~--~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~------ 196 (382)
...... .....+.++.....+++|||++.|+.+.|..|++++++.. ..+++|++++..-
T Consensus 397 --fg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~ 474 (638)
T PRK11388 397 --LGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQ 474 (638)
T ss_pred --cCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhc
Confidence 111000 0001122333456799999999999999999999998642 1456788776431
Q ss_pred -ccchhhhcccc--eEEecCCCH--HHHHHHHHHHHHH----hC--CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 197 -RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----EG--LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 197 -~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~~----~~--~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
.+.+.+-.|.. .+.++|+.+ +++..++...+.+ .+ +.++++++..|..+. .||+|.+.+.++.+....
T Consensus 475 ~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 475 NRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred CCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 23334444444 567777765 4565555554432 22 468999999999988 999999999999877655
Q ss_pred -CCCCChhhHhhh
Q 016800 265 -GSSITSKDLISV 276 (382)
Q Consensus 265 -~~~It~~~v~~~ 276 (382)
+..|+.+++...
T Consensus 555 ~~~~i~~~~lp~~ 567 (638)
T PRK11388 555 DNGRIRLSDLPEH 567 (638)
T ss_pred CCCeecHHHCchh
Confidence 456887776543
No 187
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.42 E-value=2.2e-11 Score=113.72 Aligned_cols=213 Identities=23% Similarity=0.236 Sum_probs=146.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
....+++|+...++.+.+.+..-.. .++||+|++||||..+|++|.+.-- -.+.+|+.+||... +.+.+...+-
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~---R~~~PFVavNcaAi-p~~l~ESELF 213 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASP---RAKGPFIAVNCAAI-PENLLESELF 213 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCc---ccCCCceeeecccC-CHHHHHHHhh
Confidence 3567999999999888888765432 2399999999999999999988642 22457899999864 3333333232
Q ss_pred HHHHhhhcCCC--CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc------
Q 016800 136 TFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------ 196 (382)
Q Consensus 136 ~~~~~~~~~~~--~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~------ 196 (382)
.....++.+.. ..+.++......+++||+..|+.+.|..|++.+++.. -.++||.+||..-
T Consensus 214 GhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~ 293 (464)
T COG2204 214 GHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAA 293 (464)
T ss_pred cccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHc
Confidence 22221111111 2334555577899999999999999999999998643 3567888886532
Q ss_pred -ccchhhhcccceE--EecCCCH--HHH----HHHHHHHHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 016800 197 -RIIEPLASRCAKF--RFKPLSE--EVM----SSRVLHICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (382)
Q Consensus 197 -~l~~~l~sr~~~i--~~~~~~~--~~~----~~~l~~~~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~ 263 (382)
+.-+.|--|..++ +++|+.+ +++ ..++++.++..|. .++++++..+..+. .||+|.+.|.++.++..
T Consensus 294 G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il 373 (464)
T COG2204 294 GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVIL 373 (464)
T ss_pred CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 2445555566644 4444443 343 3455555555544 58999999988765 89999999999998877
Q ss_pred c-CCCCChhhHh
Q 016800 264 F-GSSITSKDLI 274 (382)
Q Consensus 264 ~-~~~It~~~v~ 274 (382)
. +..|+.+++-
T Consensus 374 ~~~~~i~~~~l~ 385 (464)
T COG2204 374 SEGPEIEVEDLP 385 (464)
T ss_pred CCccccchhhcc
Confidence 6 4567766644
No 188
>PRK09183 transposase/IS protein; Provisional
Probab=99.41 E-value=1.2e-13 Score=122.17 Aligned_cols=175 Identities=13% Similarity=0.161 Sum_probs=109.7
Q ss_pred CccccccccCCCCCCCCccccccc--ccCCCCCchHHHHhhccccccCCchhhhhcCCCCCCcccCc-HHHHHHHHHHHH
Q 016800 2 RANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLTNTLE 78 (382)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~g~-~~~~~~l~~~l~ 78 (382)
.+++++...++.+..|++.+++.. ..+...+.++...++++ .+.+|+........|+...+. ...+..+..+-.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~e~l~~ll~~E~~~R~~~~~~~~~k---~a~~p~~~~l~~fd~~~~~~~~~~~i~~L~~~~~ 98 (259)
T PRK09183 22 ISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTR---MAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSF 98 (259)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCcHhhcccccCCCCCHHHHHHHhcCCc
Confidence 456777888899999999999999 33444444555555544 889999766666666655553 345555543211
Q ss_pred cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH-----HHHHHHHhhhcCCCCCCCCCC
Q 016800 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-----KIKTFAAVAVGSGQRRGGYPC 153 (382)
Q Consensus 79 ~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~ 153 (382)
-.+..+++|+||+|+|||+++.+++..+... ...+..++..+.. ..+.. .+........
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~~~~~l~--~~l~~a~~~~~~~~~~~~~~----------- 162 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFTTAADLL--LQLSTAQRQGRYKTTLQRGV----------- 162 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeHHHHH--HHHHHHHHCCcHHHHHHHHh-----------
Confidence 2233469999999999999999998876322 2334444432211 01100 0111110000
Q ss_pred CCcEEEEEeCCCCC--CHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 154 PPYKIIILDEADSM--TEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 154 ~~~~vliiDe~d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
....++||||++.. +...++.|+.+++.......+|+++|.+
T Consensus 163 ~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 163 MAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred cCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 14569999999875 5566778999998766555688888764
No 189
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.41 E-value=9.6e-12 Score=130.38 Aligned_cols=124 Identities=12% Similarity=0.157 Sum_probs=85.1
Q ss_pred CcEEEEEeCCCCCCHH-----HHHHHHHHHHhc-----CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHH
Q 016800 155 PYKIIILDEADSMTED-----AQNALRRTMETY-----SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSS 221 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-----~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~ 221 (382)
.+.||+|||+|.+... ..+.|+..|+.. ..++.+|.+||.++.++|++++ |+. .|.++.|+..+..+
T Consensus 1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHH
Confidence 5679999999999643 246677777632 3456778888999999999998 776 78898888877777
Q ss_pred HHHHHHHHhCCCCCHH--HHHHHHHhcCC-CHHHHHHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 222 RVLHICNEEGLNLDAE--ALSTLSSISQG-DLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 222 ~l~~~~~~~~~~~~~~--~~~~l~~~s~g-dlr~a~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
++.......|+.+.++ .++.+++.+.| +.+++.+++..++..+ ...|+.+++..++.
T Consensus 1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 6654444445555543 36778887754 3344444444444443 35688888887763
No 190
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.40 E-value=1.5e-11 Score=114.54 Aligned_cols=173 Identities=21% Similarity=0.233 Sum_probs=108.8
Q ss_pred cccCcHHHHHHHHHHHH-------c---CC--------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 62 DVAHQEEVVRVLTNTLE-------T---AN--------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~-------~---~~--------~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.++||+++++.+...+. . .. ..++||+||||+|||++|+++++.+. ..+..+++..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~------~pf~~~da~~ 151 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN------VPFAIADATT 151 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC------CCeEEechhh
Confidence 46899999998876652 1 11 23699999999999999999998873 2333333322
Q ss_pred Ccc----hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc---
Q 016800 124 DRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY--- 182 (382)
Q Consensus 124 ~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~--- 182 (382)
... -......+......... .+....+.+|+|||+|.+++ ..|+.|+++||..
T Consensus 152 L~~~gyvG~d~e~~L~~~~~~~~~------~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~ 225 (413)
T TIGR00382 152 LTEAGYVGEDVENILLKLLQAADY------DVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVAN 225 (413)
T ss_pred ccccccccccHHHHHHHHHHhCcc------cHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhcccee
Confidence 110 01122222222111100 00111445999999999976 5899999999732
Q ss_pred ----------CCceEEEEeecCc---------------------------c-----------------------ccchhh
Q 016800 183 ----------SKVTRFFFICNYI---------------------------S-----------------------RIIEPL 202 (382)
Q Consensus 183 ----------~~~~~~Il~~~~~---------------------------~-----------------------~l~~~l 202 (382)
..++.+|+|+|-. . .+.|.+
T Consensus 226 v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf 305 (413)
T TIGR00382 226 VPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF 305 (413)
T ss_pred cccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH
Confidence 1234456555430 0 034667
Q ss_pred hcccc-eEEecCCCHHHHHHHHHH----HHHH-------hCC--CCCHHHHHHHHHhc
Q 016800 203 ASRCA-KFRFKPLSEEVMSSRVLH----ICNE-------EGL--NLDAEALSTLSSIS 246 (382)
Q Consensus 203 ~sr~~-~i~~~~~~~~~~~~~l~~----~~~~-------~~~--~~~~~~~~~l~~~s 246 (382)
..|+. ++.|.|++.+++.+++.. +.++ .|+ .+++++++.|++.+
T Consensus 306 lgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 306 IGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred hCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 77886 779999999999998865 2221 244 47899999999875
No 191
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8e-12 Score=105.65 Aligned_cols=167 Identities=22% Similarity=0.331 Sum_probs=110.2
Q ss_pred CCCcccCcHHHHHHHHHHHH-----------cC-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-
Q 016800 59 QVKDVAHQEEVVRVLTNTLE-----------TA-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (382)
..+|+-|.++.++.|...+- -| ++|. +|+|||||+|||.+|++.+.+.. ..|+.+-++..
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~------aTFLKLAgPQLV 242 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN------ATFLKLAGPQLV 242 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc------chHHHhcchHHH
Confidence 56788888988888877662 22 2333 99999999999999999998762 33333333211
Q ss_pred -----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH---hc--C
Q 016800 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME---TY--S 183 (382)
Q Consensus 125 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le---~~--~ 183 (382)
.+..-++..+. .... ..+.||+|||+|.+. .+.|.-.+.++. .+ .
T Consensus 243 QMfIGdGAkLVRDAFa----LAKE----------kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFA----LAKE----------KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred hhhhcchHHHHHHHHH----Hhhc----------cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc
Confidence 12222333221 1111 155799999999873 245555555554 33 3
Q ss_pred CceEEEEeecCccccchhhhccc--c-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcC
Q 016800 184 KVTRFFFICNYISRIIEPLASRC--A-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQ 247 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~sr~--~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~ 247 (382)
..+.+|..||..+-+.|++.+-. . .++|+-|+.+....+++-...+.++ +++ ..+.+++.++
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTd 374 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTD 374 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhccc
Confidence 56778999999999999987643 3 7999999988888888766665554 333 3667777664
No 192
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.38 E-value=2.6e-11 Score=117.00 Aligned_cols=215 Identities=18% Similarity=0.184 Sum_probs=137.6
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcC-----CCCCCCceEEeecCCCcchHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFG-----PELYKSRVLELNASDDRGINVV 130 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 130 (382)
..|++++|+...++.+.+.+..- ...++||+|++||||+.+|+++...+.. ....+..++.+||.... ...+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~-e~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA-ESLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC-hhhH
Confidence 36889999988888877776532 2335999999999999999999986210 11234578999998643 2222
Q ss_pred HHHHHHHHHhhhcCC---CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc
Q 016800 131 RTKIKTFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS 196 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~---~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~ 196 (382)
...+-........+. ...+.++......++|||++.|+...|..|++.+++.. .++++|++++..-
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL 374 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH
Confidence 222211111111010 11122333456799999999999999999999998642 2457888876532
Q ss_pred -c------cchhhhcccc--eEEecCCCH--HHHHHHHHHHHHH----hCCCCCHHHHH-------HHHHh-cCCCHHHH
Q 016800 197 -R------IIEPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----EGLNLDAEALS-------TLSSI-SQGDLRRA 253 (382)
Q Consensus 197 -~------l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~~----~~~~~~~~~~~-------~l~~~-s~gdlr~a 253 (382)
. +.+.+-.|+. .+.++|+.+ +|+..++...+.+ .+..++++++. .+..+ ..||+|.+
T Consensus 375 ~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 375 EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 1 2234444544 677777765 5666655554443 56667877763 33333 38999999
Q ss_pred HHHHHHHHHhcC----CCCChhhH
Q 016800 254 ITYLQGAARLFG----SSITSKDL 273 (382)
Q Consensus 254 ~~~l~~~~~~~~----~~It~~~v 273 (382)
.+.++.++.+.. ..|+.+++
T Consensus 455 ~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 455 RNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHHHHHhcCCCCcCccCHHHh
Confidence 999999887642 34665554
No 193
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.1e-11 Score=101.52 Aligned_cols=159 Identities=22% Similarity=0.312 Sum_probs=105.8
Q ss_pred CCCCCcccC-cHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 57 PKQVKDVAH-QEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 57 p~~~~~~~g-~~~~~~~l~~~l~~~-------------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
|.+.-+.+| .++.++.+...++-. .+..+|+|||||+|||.+|++++.+. ...++.+.++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsgs 215 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGS 215 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEechH
Confidence 544445665 577777777766432 33349999999999999999999986 3456666554
Q ss_pred CCc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh-----cCC
Q 016800 123 DDR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET-----YSK 184 (382)
Q Consensus 123 ~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~-----~~~ 184 (382)
... .+..-......++-.+... .+.++++||+|.+. .+.|.-.+.++.. ...
T Consensus 216 elvqk~igegsrmvrelfvmareh----------apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREH----------APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhc----------CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 311 0111111222222221111 34699999999883 3456666666653 346
Q ss_pred ceEEEEeecCccccchhhhcccc---eEEecCCCHHHHHHHHHHHHHHhC
Q 016800 185 VTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEG 231 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~ 231 (382)
+..+|++||..+-+++++.+-.. .++|+||+.+...++|+-...+.+
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn 335 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 335 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc
Confidence 78899999999999999987443 799999999999888876655543
No 194
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.38 E-value=5.4e-11 Score=99.59 Aligned_cols=190 Identities=18% Similarity=0.230 Sum_probs=133.0
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHH---HcCCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTL---ETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l---~~~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
.+.|..+.+++|-+.+.+.|.+-. .+|.+. |+|++|..|+||+++++++..++...+ ...++++..+......
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g---lrLVEV~k~dl~~Lp~ 129 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEG---LRLVEVDKEDLATLPD 129 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcC---CeEEEEcHHHHhhHHH
Confidence 344567889999888887764432 344444 499999999999999999999986654 3478887766544444
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHH----hcCCceEEEEeecCccccchh---
Q 016800 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA-QNALRRTME----TYSKVTRFFFICNYISRIIEP--- 201 (382)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le----~~~~~~~~Il~~~~~~~l~~~--- 201 (382)
+-+.++... .+-||++|+...-..+. ...|...|| ..|.++.|..++|..+.+...
T Consensus 130 l~~~Lr~~~----------------~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~d 193 (287)
T COG2607 130 LVELLRARP----------------EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKD 193 (287)
T ss_pred HHHHHhcCC----------------ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhh
Confidence 444443311 56699999987654443 344444444 567888888888765544322
Q ss_pred -------------------hhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH-----HHHHhcCCCHHHHHHH
Q 016800 202 -------------------LASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS-----TLSSISQGDLRRAITY 256 (382)
Q Consensus 202 -------------------l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~l~~~s~gdlr~a~~~ 256 (382)
+..|+. .+.|.|++.++-..++...+++.++.++++.++ ......+.+-|.|.+.
T Consensus 194 n~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF 273 (287)
T COG2607 194 NEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQF 273 (287)
T ss_pred CCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHH
Confidence 233554 689999999999999999999999998775543 3334556778888888
Q ss_pred HHHHHH
Q 016800 257 LQGAAR 262 (382)
Q Consensus 257 l~~~~~ 262 (382)
++.++.
T Consensus 274 ~~~~~g 279 (287)
T COG2607 274 IRDLAG 279 (287)
T ss_pred HHHHHh
Confidence 877664
No 195
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.36 E-value=6.7e-11 Score=117.63 Aligned_cols=214 Identities=14% Similarity=0.089 Sum_probs=132.1
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-----------CCCC----------------
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-----------GPEL---------------- 111 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~-----------~~~~---------------- 111 (382)
.|.+++||++++..+...+.+++..++||.|++|+|||++|+++++.+- |...
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 4679999999999998888887777799999999999999999999871 1100
Q ss_pred --CCCceEEeecCCC----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC--
Q 016800 112 --YKSRVLELNASDD----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-- 183 (382)
Q Consensus 112 --~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-- 183 (382)
....++.+..... .+...+...+.. .. .....+.+......+++|||++.+++..++.|+..|++..
T Consensus 82 ~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~---g~--~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~ 156 (633)
T TIGR02442 82 EQRPVPFVNLPLGATEDRVVGSLDIERALRE---GE--KAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNR 156 (633)
T ss_pred ccCCCCeeeCCCCCcHHHcCCcccHHHHhhc---CC--eeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEE
Confidence 0122333222211 000111111110 00 0001122223355799999999999999999999998642
Q ss_pred -----------CceEEEEeecCc-cccchhhhcccc-eEEecCCC-HHHHHHHHHHHHH---------------------
Q 016800 184 -----------KVTRFFFICNYI-SRIIEPLASRCA-KFRFKPLS-EEVMSSRVLHICN--------------------- 228 (382)
Q Consensus 184 -----------~~~~~Il~~~~~-~~l~~~l~sr~~-~i~~~~~~-~~~~~~~l~~~~~--------------------- 228 (382)
..+.+|.++|.. ..+.+.+.+|+. .+.+..+. .++..+++.+...
T Consensus 157 v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (633)
T TIGR02442 157 VEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRN 236 (633)
T ss_pred EEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHH
Confidence 235556665643 357789999997 46666554 3333333332110
Q ss_pred --------HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 229 --------EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 229 --------~~~~~~~~~~~~~l~~~s---~-gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
...+.++++.++.++..+ + ..+|..+..+..+...+ ...++.+||..++
T Consensus 237 ~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~ 301 (633)
T TIGR02442 237 RIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAA 301 (633)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 014567888888887755 2 13677666665543333 4679999997766
No 196
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.35 E-value=8e-11 Score=114.62 Aligned_cols=202 Identities=20% Similarity=0.179 Sum_probs=134.3
Q ss_pred CCCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
.+.+++|+...++.+.+.++.-. ..+++|+|++||||+++|+++...... ....++.+||..... ..+...+-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---~~~p~v~v~c~~~~~-~~~e~~lfG 260 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR---ADKPLVYLNCAALPE-SLAESELFG 260 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc---CCCCeEEEEcccCCh-HHHHHHhcC
Confidence 56789999888877777665432 224999999999999999999987421 245788899876421 222211100
Q ss_pred HHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------
Q 016800 137 FAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------- 196 (382)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~------- 196 (382)
.......+. ...+.+.......++|||++.|+.+.|..|++++++.. ..+++|++++..-
T Consensus 261 ~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 340 (509)
T PRK05022 261 HVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAG 340 (509)
T ss_pred ccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcC
Confidence 000000000 01112233455689999999999999999999998643 2568888886532
Q ss_pred ccchhhhcccc--eEEecCCCH--HHHHHHHHH----HHHHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLH----ICNEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 197 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~----~~~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
.+...+..|.. .|.++|+.+ +++..++.. .+.+.| +.++++++..|..+. .||+|.+.+.++.++..+
T Consensus 341 ~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 341 RFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred CccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 24455555654 577777764 455554443 333333 468999999998876 899999999999988765
No 197
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=1.6e-10 Score=103.66 Aligned_cols=167 Identities=18% Similarity=0.162 Sum_probs=106.8
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
..+.|..-.+.+..++....+..++..++ +++|.||||||||++++.+++.+. ..++.+++.......++-.
T Consensus 37 ~~~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l~------~~~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 37 DEHVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARLN------WPCVRVNLDSHVSRIDLVG 108 (327)
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHHC------CCeEEEEecCCCChhhcCC
Confidence 33455544566777777777777776544 699999999999999999999984 4445555443221111100
Q ss_pred H-HHHHHHhhhcCCCCCCCCC--CCCcEEEEEeCCCCCCHHHHHHHHHHHHh--------------cCCceEEEEeecCc
Q 016800 133 K-IKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSMTEDAQNALRRTMET--------------YSKVTRFFFICNYI 195 (382)
Q Consensus 133 ~-l~~~~~~~~~~~~~~~~~~--~~~~~vliiDe~d~l~~~~~~~Ll~~le~--------------~~~~~~~Il~~~~~ 195 (382)
. ...............+.+. .....++++||++..+++.++.|..+||. +++..++|.++|..
T Consensus 109 ~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 109 KDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred CceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 0 0000000000000000110 01446899999999999999999999983 22456778888864
Q ss_pred c------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHH
Q 016800 196 S------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHIC 227 (382)
Q Consensus 196 ~------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~ 227 (382)
. .+..+..+|+. ++.+..|+.++-.+++...+
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 3 26789999997 56899999999999886543
No 198
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.6e-11 Score=112.94 Aligned_cols=180 Identities=21% Similarity=0.214 Sum_probs=123.7
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHc----------CC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLET----------AN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~----------~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
++-++..|+|+.|.+.+.+.+...+-= -+ +..+|+.||||+|||.+++++|.+. ...++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~------~atff~iS 218 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES------GATFFNIS 218 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh------cceEeecc
Confidence 445567889999988888777665421 12 2239999999999999999999987 34555555
Q ss_pred cCCCcch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HH-HHHHHHHHH---hcC
Q 016800 121 ASDDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DA-QNALRRTME---TYS 183 (382)
Q Consensus 121 ~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~-~~~Ll~~le---~~~ 183 (382)
++...+. ......+..+...+... .+.|++|||+|.+-. .. .+.|+...- .+.
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~----------qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~ 288 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSL----------QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPD 288 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhc----------CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCC
Confidence 5432111 11122222222222111 567999999998731 11 223333322 234
Q ss_pred CceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 016800 184 KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g 248 (382)
+.+.+|.+||.+..++.+++.|+. ++.++.|+.+....++.+.+.+.+..+.+..+..|++.++|
T Consensus 289 drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 289 DRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred CeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 567777788999999999999998 77899999999999999999888777888999999987744
No 199
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.34 E-value=5.4e-11 Score=120.14 Aligned_cols=218 Identities=22% Similarity=0.261 Sum_probs=137.9
Q ss_pred chhhhhcCC--CCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 49 QPWVEKYRP--KQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 49 ~~~~~k~~p--~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
..+.+...+ ..|++++|+...++.+.+.++.- ...+++|+|++|||||++|+++...... ....++.++|...
T Consensus 362 ~~lt~~L~~~n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r---~~~~~v~i~c~~~ 438 (686)
T PRK15429 362 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR---NNRRMVKMNCAAM 438 (686)
T ss_pred HHHHHhhhhccccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC---CCCCeEEEecccC
Confidence 334444444 47889999988887776655532 2235999999999999999999886522 2357788888754
Q ss_pred cchHHHHHHHHHHHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEe
Q 016800 125 RGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFI 191 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~ 191 (382)
. ...+...+-........+. ...+.++.....+++|||++.++.+.|..|+..+++.. ..+++|++
T Consensus 439 ~-~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~ 517 (686)
T PRK15429 439 P-AGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAA 517 (686)
T ss_pred C-hhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEe
Confidence 2 1222211100000000000 00111222245699999999999999999999998642 35678888
Q ss_pred ecCcc-------ccchhhhcccc--eEEecCCCH--HHHHHHHHH----HHHHhCC---CCCHHHHHHHHHhc-CCCHHH
Q 016800 192 CNYIS-------RIIEPLASRCA--KFRFKPLSE--EVMSSRVLH----ICNEEGL---NLDAEALSTLSSIS-QGDLRR 252 (382)
Q Consensus 192 ~~~~~-------~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~----~~~~~~~---~~~~~~~~~l~~~s-~gdlr~ 252 (382)
++..- .+...+-.|.. .|.++|+.+ +++..++.. .+.+.|. .+++++++.+..+. .||+|.
T Consensus 518 t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrE 597 (686)
T PRK15429 518 TNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRE 597 (686)
T ss_pred CCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHH
Confidence 86532 12333445544 567777764 555544443 3443343 47899999988765 899999
Q ss_pred HHHHHHHHHHhc-CCCCCh
Q 016800 253 AITYLQGAARLF-GSSITS 270 (382)
Q Consensus 253 a~~~l~~~~~~~-~~~It~ 270 (382)
+.+.++.++..+ +..|+.
T Consensus 598 L~~~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 598 LENVIERAVLLTRGNVLQL 616 (686)
T ss_pred HHHHHHHHHHhCCCCcccc
Confidence 999999988765 345554
No 200
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=1.5e-10 Score=108.15 Aligned_cols=217 Identities=19% Similarity=0.191 Sum_probs=142.8
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHcC-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLETA-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
...+.+|++++|....+..+...++.. +.+ .+|+.|++||||..+|+++.+.- .-.+.+|+.+||... +..-+.
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S---~R~~~PFIaiNCaAi-Pe~LlE 313 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLS---PRANGPFIAINCAAI-PETLLE 313 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcC---cccCCCeEEEecccC-CHHHHH
Confidence 344568999999977776666665543 323 39999999999999999998753 334568999999864 333333
Q ss_pred HHHHHHHHhhhcCCC---CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-
Q 016800 132 TKIKTFAAVAVGSGQ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS- 196 (382)
Q Consensus 132 ~~l~~~~~~~~~~~~---~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~- 196 (382)
..+-.+...+..+.. +.+.++.+....+++||+..|+...|..|++.|++.. -.+++|.+||..-
T Consensus 314 SELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~ 393 (560)
T COG3829 314 SELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLE 393 (560)
T ss_pred HHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHH
Confidence 333222222222221 2334455677799999999999999999999998652 4677888887532
Q ss_pred c------cchhhhcccce--EEecCCCH--HHHHHHHHHHH----HHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHH
Q 016800 197 R------IIEPLASRCAK--FRFKPLSE--EVMSSRVLHIC----NEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQ 258 (382)
Q Consensus 197 ~------l~~~l~sr~~~--i~~~~~~~--~~~~~~l~~~~----~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~ 258 (382)
+ .-..|--|..+ +.++|+-+ +++..+..+.. .+.+. .++++++..+.++. .||+|.+-|.++
T Consensus 394 ~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviE 473 (560)
T COG3829 394 KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIE 473 (560)
T ss_pred HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHH
Confidence 1 22333335553 45555542 45544444333 33332 37899998888765 899999999999
Q ss_pred HHHHhc--CCCCChhhHh
Q 016800 259 GAARLF--GSSITSKDLI 274 (382)
Q Consensus 259 ~~~~~~--~~~It~~~v~ 274 (382)
.+.... +..|+.+++-
T Consensus 474 R~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 474 RAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHhccCCcceeehhhcc
Confidence 988644 3446655544
No 201
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.1e-10 Score=111.47 Aligned_cols=170 Identities=21% Similarity=0.196 Sum_probs=120.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC----------CC--C-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA----------NC--P-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~----------~~--~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
..++|+-|-.++++.+...+.-. +. + .+|+|||||||||.+|.+++... +..++.+.+++.
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~------~~~fisvKGPEl 737 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS------NLRFISVKGPEL 737 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC------CeeEEEecCHHH
Confidence 57889999988888888777432 22 2 39999999999999999999875 567777776642
Q ss_pred c------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc--CCc
Q 016800 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY--SKV 185 (382)
Q Consensus 125 ~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~--~~~ 185 (382)
. +...+|+.+.... . .++.|+++||+|.+. ....|.|+.-|+.- -..
T Consensus 738 L~KyIGaSEq~vR~lF~rA~----~----------a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G 803 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQ----S----------AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG 803 (952)
T ss_pred HHHHhcccHHHHHHHHHHhh----c----------cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce
Confidence 1 1233444333321 1 177899999999884 34678888888743 345
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g 248 (382)
+.++.+|..++.+++++.+ |.. .+.++.|++.+..++++......... ++-.++.++..++|
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g 868 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDG 868 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCC
Confidence 5566667788999999987 444 68899999999999998776643322 33346777777655
No 202
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.31 E-value=2e-10 Score=101.07 Aligned_cols=217 Identities=15% Similarity=0.096 Sum_probs=130.2
Q ss_pred CcccCcHHHHH---HHHHHHH---cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVR---VLTNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~---~l~~~l~---~~~~~~lll~Gp~G~GKt~la~~la~~l~~~---~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++|.+.+.+ .|...+. ..++|+++|+|++|.|||++++.+.+..... +.....++.+.++...+...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 45677766654 4444454 4578889999999999999999999865321 1112356666655433333332
Q ss_pred HHHHHHHHhhhcCCCCCC--------CCCCCCcEEEEEeCCCCC---CHHHHHHHHHHHHhcC--CceEEEEeecC----
Q 016800 132 TKIKTFAAVAVGSGQRRG--------GYPCPPYKIIILDEADSM---TEDAQNALRRTMETYS--KVTRFFFICNY---- 194 (382)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~--------~~~~~~~~vliiDe~d~l---~~~~~~~Ll~~le~~~--~~~~~Il~~~~---- 194 (382)
..+-.............. ....-+.+++||||+|.+ +...|..++..+.... -...+|+++..
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYR 193 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHH
Confidence 222221111111100000 001126789999999996 3333444444443222 23345565532
Q ss_pred ccccchhhhcccceEEecCCCHH-HHHHHHHHHHHHhCC----C-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----
Q 016800 195 ISRIIEPLASRCAKFRFKPLSEE-VMSSRVLHICNEEGL----N-LDAEALSTLSSISQGDLRRAITYLQGAARLF---- 264 (382)
Q Consensus 195 ~~~l~~~l~sr~~~i~~~~~~~~-~~~~~l~~~~~~~~~----~-~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---- 264 (382)
.-.-++.+.+|+..+.+++...+ +...+|...-..... . -+++.+..|...|+|.++....++..++..+
T Consensus 194 al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 194 ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSG 273 (302)
T ss_pred HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcC
Confidence 23356899999999999888754 555555443322111 1 2567779999999999999999999888776
Q ss_pred CCCCChhhHhhhh
Q 016800 265 GSSITSKDLISVS 277 (382)
Q Consensus 265 ~~~It~~~v~~~~ 277 (382)
...||.+.+..+-
T Consensus 274 ~E~It~~~l~~~~ 286 (302)
T PF05621_consen 274 EERITREILDKID 286 (302)
T ss_pred CceecHHHHhhCC
Confidence 3568888776643
No 203
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.2e-11 Score=113.68 Aligned_cols=198 Identities=22% Similarity=0.212 Sum_probs=130.4
Q ss_pred CCCCcccCcHHHHHHHHHHH---Hc--------CCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-
Q 016800 58 KQVKDVAHQEEVVRVLTNTL---ET--------ANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l---~~--------~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (382)
.+|.|+.|.+++++.+...+ ++ +++|. ++++||||||||.+|++++-+. +.+++.+..++.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA------~VPFf~iSGS~FV 220 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDFV 220 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc------CCCceeccchhhh
Confidence 58899999999887776655 32 24555 9999999999999999999987 345555555442
Q ss_pred -----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhcCC-
Q 016800 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYSK- 184 (382)
Q Consensus 125 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~~- 184 (382)
.+...+|+.....-.. -+.|++|||+|.... +..|.|+--|+....
T Consensus 221 emfVGvGAsRVRdLF~qAkk~--------------aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKN--------------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhcc--------------CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 2345556555443211 346999999998842 346777777777663
Q ss_pred -ceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcC----CCHHHHHH
Q 016800 185 -VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQ----GDLRRAIT 255 (382)
Q Consensus 185 -~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~----gdlr~a~~ 255 (382)
.+.++..||.++-++++|.+ |+. .+..+.|+-....++++-.++. +.++++ .+..+++.+. .|+-..+|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~--~~l~~~Vdl~~iAr~tpGfsGAdL~nl~N 364 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN--KPLAEDVDLKKIARGTPGFSGADLANLLN 364 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc--CCCCCcCCHHHHhhhCCCcccchHhhhHH
Confidence 44555567888889899886 554 7888889989999998855544 333322 2444666654 45544444
Q ss_pred HHHHHHHhc-CCCCChhhHhhhh
Q 016800 256 YLQGAARLF-GSSITSKDLISVS 277 (382)
Q Consensus 256 ~l~~~~~~~-~~~It~~~v~~~~ 277 (382)
...-.+.-. ...|++.++.++.
T Consensus 365 EAal~aar~n~~~i~~~~i~ea~ 387 (596)
T COG0465 365 EAALLAARRNKKEITMRDIEEAI 387 (596)
T ss_pred HHHHHHHHhcCeeEeccchHHHH
Confidence 433222221 4567776666554
No 204
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.30 E-value=7.6e-11 Score=108.34 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=76.3
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHHHhcC----------CceEEEEee----cCccccchhhhcccc-
Q 016800 155 PYKIIILDEADSMTE------------DAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA- 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~~------------~~~~~Ll~~le~~~----------~~~~~Il~~----~~~~~l~~~l~sr~~- 207 (382)
...||+|||+|++.. ..|+.|++++|... .+..||+.+ ..+..+.|.+.-|+.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 567999999999852 36899999999532 344455544 345668999999998
Q ss_pred eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 016800 208 KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS--------QGDLRRAITYLQGAA 261 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s--------~gdlr~a~~~l~~~~ 261 (382)
++.+++++.+++..+|.. .++.+|+ .++++++..|++.+ +--.|.+...++...
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 789999999999998833 2334565 47899999998765 223455555555443
No 205
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=5.8e-11 Score=100.80 Aligned_cols=173 Identities=19% Similarity=0.247 Sum_probs=114.0
Q ss_pred CCCcccCcHHHHHHHHHHHHcC------------CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 59 QVKDVAHQEEVVRVLTNTLETA------------NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~------------~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
+..|+-|-++.++.++..++.. .+| .+|+|||||+|||.+|+++++.. +..|+.+-++...
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt------dacfirvigselv 248 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------DACFIRVIGSELV 248 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc------CceEEeehhHHHH
Confidence 5678888888888887776532 222 39999999999999999999875 4455555544321
Q ss_pred c--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH-----hcCCceE
Q 016800 126 G--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME-----TYSKVTR 187 (382)
Q Consensus 126 ~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le-----~~~~~~~ 187 (382)
. +..-...+..++..+... +-.++++||+|.+. .+.|.-.+.++. ++..+..
T Consensus 249 qkyvgegarmvrelf~martk----------kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTK----------KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred HHHhhhhHHHHHHHHHHhccc----------ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 0 111112233333332221 55799999999873 345666666665 4567889
Q ss_pred EEEeecCccccchhhhccc--c-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRC--A-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGD 249 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~--~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gd 249 (382)
++++||.++.+.+++.+-. . .++|..|+-+-...+++-.++... ++.+. .+.|+++|.++
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms--verdir~ellarlcpns 382 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS--VERDIRFELLARLCPNS 382 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc--cccchhHHHHHhhCCCC
Confidence 9999999999999998743 3 789998888777777654444322 33332 45667766443
No 206
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.28 E-value=1.8e-10 Score=113.51 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=87.0
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---------------------CceEEEEeecCc--cccchhhhcccc---
Q 016800 154 PPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--SRIIEPLASRCA--- 207 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------------------~~~~~Il~~~~~--~~l~~~l~sr~~--- 207 (382)
+...+++|||++.|++..|..|++.|++.. -.+++|+++|.. ..+.+.+++|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 355799999999999999999999997531 245677777754 468899999987
Q ss_pred -eEEecC---CCHHH---HHHHHHHHHHHhC--CCCCHHHHHHHHHhc----------CCCHHHHHHHHHHHHHhc----
Q 016800 208 -KFRFKP---LSEEV---MSSRVLHICNEEG--LNLDAEALSTLSSIS----------QGDLRRAITYLQGAARLF---- 264 (382)
Q Consensus 208 -~i~~~~---~~~~~---~~~~l~~~~~~~~--~~~~~~~~~~l~~~s----------~gdlr~a~~~l~~~~~~~---- 264 (382)
.+.|+. .+.+. +..++.+.+++.| ..++++++..+++.+ ..+.|.+-+++..+...+
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 234432 23443 4455555565653 358999998888532 245788888887764333
Q ss_pred CCCCChhhHhhhhC
Q 016800 265 GSSITSKDLISVSG 278 (382)
Q Consensus 265 ~~~It~~~v~~~~~ 278 (382)
...|+.++|.+++.
T Consensus 376 ~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 376 KVYVTAEHVLKAKK 389 (608)
T ss_pred CceecHHHHHHHHH
Confidence 35789999887764
No 207
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.3e-11 Score=102.84 Aligned_cols=146 Identities=22% Similarity=0.335 Sum_probs=101.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
-++.|+-|.+..++.+...++- | ++|. +++||+||||||.+|+++|+.. +..|+.+-+++.
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT------SATFlRvvGseL 255 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT------SATFLRVVGSEL 255 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc------chhhhhhhhHHH
Confidence 3778998999999999887743 3 2233 9999999999999999999875 234444333321
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc-----
Q 016800 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY----- 182 (382)
Q Consensus 125 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~----- 182 (382)
.+..-+++.+.-.... ...|++|||+|.+. .+.|.-++.++...
T Consensus 256 iQkylGdGpklvRqlF~vA~e~--------------apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds 321 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEH--------------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhc--------------CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc
Confidence 1223333333222111 34699999999883 23456666666532
Q ss_pred CCceEEEEeecCccccchhhhccc--c-eEEecCCCHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRC--A-KFRFKPLSEEVMSSRV 223 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~--~-~i~~~~~~~~~~~~~l 223 (382)
...+.+|++||..+.+.|++.+-. . .|.|+.|+...-+.++
T Consensus 322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf 365 (440)
T KOG0726|consen 322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIF 365 (440)
T ss_pred cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeE
Confidence 457889999999999999998744 3 7999999888777665
No 208
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.26 E-value=7.9e-12 Score=104.33 Aligned_cols=118 Identities=27% Similarity=0.380 Sum_probs=68.5
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC--------C-----c
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD--------D-----R 125 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~--------~-----~ 125 (382)
.|.+++||+.+++.+.-....+ .|+||+||||+|||++|+.+...+- ........++.... . .
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP--~l~~~e~le~~~i~s~~~~~~~~~~~~~~ 76 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLP--PLTEEEALEVSKIYSVAGLGPDEGLIRQR 76 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS----CCEECCESS--S-TT---S---EEEE--
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCC--CCchHHHhhhccccccccCCCCCceecCC
Confidence 4789999999999998777764 3799999999999999999998762 11111111111000 0 0
Q ss_pred chHHHHH--HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 126 GINVVRT--KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 126 ~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
....... ....+... +.....+.+..+.+.|+++||+..+++...+.|+..+|+.
T Consensus 77 Pfr~phhs~s~~~liGg--g~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 77 PFRAPHHSASEAALIGG--GRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp -EEEE-TT--HHHHHEE--GGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred CcccCCCCcCHHHHhCC--CcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 0000000 00111100 0111233334446779999999999999999999999964
No 209
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=2.9e-10 Score=104.92 Aligned_cols=210 Identities=23% Similarity=0.240 Sum_probs=140.4
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
.+.++||+...+..+.+.++--... .+||.|++||||.-+|+++.+.-. -....++.+||+.. +.......+-.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~---R~~kPfV~~NCAAl-PesLlESELFG 296 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSP---RRDKPFVKLNCAAL-PESLLESELFG 296 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCc---ccCCCceeeecccc-chHHHHHHHhc
Confidence 5678999998888887777543222 399999999999999999988642 23467899999864 32333332222
Q ss_pred HHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------
Q 016800 137 FAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------- 196 (382)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~------- 196 (382)
....++.+. ...+.++.++...+++||+..|+...|.+|++.+.+.. -.+++|.+||..-
T Consensus 297 HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G 376 (550)
T COG3604 297 HEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDG 376 (550)
T ss_pred ccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcC
Confidence 222222221 13455666677899999999999999999999998642 3567888887532
Q ss_pred ccchhhhcccceE--EecCCCH--HHH----HHHHHHHHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 197 RIIEPLASRCAKF--RFKPLSE--EVM----SSRVLHICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 197 ~l~~~l~sr~~~i--~~~~~~~--~~~----~~~l~~~~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
+.-..+--|..++ .++|+-+ +++ ..++++.....|. .+++++++.+..+. .||+|.+.|.++.++..+
T Consensus 377 ~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 377 EFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 1223333355543 4444432 222 3344444445554 58999999998875 899999999999999866
Q ss_pred CCCCChhh
Q 016800 265 GSSITSKD 272 (382)
Q Consensus 265 ~~~It~~~ 272 (382)
+..++..+
T Consensus 457 ~~~~~~~d 464 (550)
T COG3604 457 GRLTRRGD 464 (550)
T ss_pred cccCCCcc
Confidence 55555444
No 210
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.25 E-value=4.8e-10 Score=108.79 Aligned_cols=212 Identities=20% Similarity=0.244 Sum_probs=138.3
Q ss_pred CCCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
.+.+++|....+..+.+.+.... ...++|+|++||||+++|+++...... ....++.++|... ....+...+-.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~i~i~c~~~-~~~~~~~~lfg 211 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR---AKAPFIALNMAAI-PKDLIESELFG 211 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC---CCCCeEeeeCCCC-CHHHHHHHhcC
Confidence 45678898777766665554322 223999999999999999999886422 2357888898765 22222222111
Q ss_pred HHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------c
Q 016800 137 FAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (382)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~ 196 (382)
.......+. ...+.+.......++|||++.|+...|..|++++++.. .++++|++++.. .
T Consensus 212 ~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 291 (469)
T PRK10923 212 HEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 (469)
T ss_pred CCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcC
Confidence 000000000 01112223345689999999999999999999998642 245788887643 2
Q ss_pred ccchhhhcccc--eEEecCCCH--HHHHHHHHHHH----HHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 197 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~----~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
.+.+.+..|+. .+.++|+.. +++..++...+ ...+. .++++++..|..+. .||+|.+.+.++.+...+
T Consensus 292 ~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 34566777765 667777654 45555444433 33332 47999999988876 899999999999988765
Q ss_pred -CCCCChhhHh
Q 016800 265 -GSSITSKDLI 274 (382)
Q Consensus 265 -~~~It~~~v~ 274 (382)
+..|+.+++.
T Consensus 372 ~~~~i~~~~l~ 382 (469)
T PRK10923 372 AGQEVLIQDLP 382 (469)
T ss_pred CCCcccHHHCc
Confidence 5678877764
No 211
>PHA02244 ATPase-like protein
Probab=99.25 E-value=2.2e-10 Score=103.86 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC
Q 016800 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (382)
Q Consensus 71 ~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (382)
..+.+++..+. +++|+||+|||||++|+++++.+. ..++.++... +.. . +..+.. .......+.
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg------~pfv~In~l~----d~~-~-L~G~i~--~~g~~~dgp 173 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALD------LDFYFMNAIM----DEF-E-LKGFID--ANGKFHETP 173 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecCh----HHH-h-hccccc--ccccccchH
Confidence 44555665554 599999999999999999999873 3445454211 000 0 000000 000000000
Q ss_pred C--CCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----------cCCceEEEEeecCc-----------cccchhhhccc
Q 016800 151 Y--PCPPYKIIILDEADSMTEDAQNALRRTMET-----------YSKVTRFFFICNYI-----------SRIIEPLASRC 206 (382)
Q Consensus 151 ~--~~~~~~vliiDe~d~l~~~~~~~Ll~~le~-----------~~~~~~~Il~~~~~-----------~~l~~~l~sr~ 206 (382)
+ ......+++|||++.++++.+..|...+++ .++++++|+++|.. ..+.+++++|+
T Consensus 174 Ll~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF 253 (383)
T PHA02244 174 FYEAFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF 253 (383)
T ss_pred HHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc
Confidence 0 001446999999999999999999999973 24678899999873 45789999999
Q ss_pred ceEEecCCCH
Q 016800 207 AKFRFKPLSE 216 (382)
Q Consensus 207 ~~i~~~~~~~ 216 (382)
..+.|..++.
T Consensus 254 v~I~~dyp~~ 263 (383)
T PHA02244 254 APIEFDYDEK 263 (383)
T ss_pred EEeeCCCCcH
Confidence 9999988873
No 212
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.24 E-value=2.8e-10 Score=104.74 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=76.3
Q ss_pred CcEEEEEeCCCCCC------------HHHHHHHHHHHHhcC----------CceEEEEee----cCccccchhhhcccc-
Q 016800 155 PYKIIILDEADSMT------------EDAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA- 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~------------~~~~~~Ll~~le~~~----------~~~~~Il~~----~~~~~l~~~l~sr~~- 207 (382)
...||+|||+|++. ...|+.|++++|... .+..||+.+ ..+..+.|.+.-|+.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 56799999999984 236899999999632 334455543 345668899999998
Q ss_pred eEEecCCCHHHHHHHHHH----H-------HHHhCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 016800 208 KFRFKPLSEEVMSSRVLH----I-------CNEEGL--NLDAEALSTLSSIS--------QGDLRRAITYLQGAA 261 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~----~-------~~~~~~--~~~~~~~~~l~~~s--------~gdlr~a~~~l~~~~ 261 (382)
++.+++++.+++..+|.. . ++.+|+ .+++++++.||+.+ +--.|.+...++..-
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 789999999999998843 2 334465 47899999998765 223455555555443
No 213
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.24 E-value=5.7e-10 Score=107.54 Aligned_cols=212 Identities=20% Similarity=0.212 Sum_probs=136.5
Q ss_pred CCCcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
.+.+++|....+..+...+.. ....+++++|++|+||+++|+.+...... ....++.++|.... ...+...+-.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~v~v~c~~~~-~~~~~~~lfg 212 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR---KDKRFVAINCAAIP-ENLLESELFG 212 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc---CCCCeEEEECCCCC-hHHHHHHhcC
Confidence 456788887777766666653 22234899999999999999999876422 23467888887642 2222221110
Q ss_pred HHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------c
Q 016800 137 FAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (382)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~ 196 (382)
.......+. ...+........+++|||++.|+...|..|++++++.. ..+++|++++.. .
T Consensus 213 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 292 (445)
T TIGR02915 213 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEG 292 (445)
T ss_pred CCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcC
Confidence 000000000 01112223356799999999999999999999998642 256788887654 2
Q ss_pred ccchhhhcccc--eEEecCCCH--HHHHHHH----HHHHHHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRV----LHICNEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 197 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l----~~~~~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
.+.+.+..|+. .+.++|+.. +++..++ .+.+...+ ..++++++..+..+. .||+|.+.+.++.++..+
T Consensus 293 ~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 293 TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred CccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 23444555655 567777654 3444433 33343334 358999999998876 899999999999988765
Q ss_pred -CCCCChhhHh
Q 016800 265 -GSSITSKDLI 274 (382)
Q Consensus 265 -~~~It~~~v~ 274 (382)
+..|+.+++.
T Consensus 373 ~~~~i~~~~l~ 383 (445)
T TIGR02915 373 EGNQITAEDLG 383 (445)
T ss_pred CCCcccHHHcC
Confidence 4567777653
No 214
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1e-10 Score=102.01 Aligned_cols=134 Identities=22% Similarity=0.312 Sum_probs=89.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceEEeecCCCcc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~---~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (382)
+|++||||||||++++++|+.+--. .+.....+++|+....+ -.-+...++......... +.
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~---------~~ 250 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDR---------GN 250 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCC---------Cc
Confidence 8999999999999999999998421 22334567777753211 111222222222211111 14
Q ss_pred cEEEEEeCCCCCCH---------------HHHHHHHHHHHhc--CCceEEEEeecCccccchhhhcccc-eEEecCCCHH
Q 016800 156 YKIIILDEADSMTE---------------DAQNALRRTMETY--SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEE 217 (382)
Q Consensus 156 ~~vliiDe~d~l~~---------------~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~ 217 (382)
.-.|+|||++.+.. .+.|+++.-|+.. .+++.++.++|-.+.++.++..|.. +....+|+..
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHH
Confidence 56799999998731 2468888888853 4566555556777889999999999 6788899998
Q ss_pred HHHHHHHHHH
Q 016800 218 VMSSRVLHIC 227 (382)
Q Consensus 218 ~~~~~l~~~~ 227 (382)
.+..+++...
T Consensus 331 ai~~Ilksci 340 (423)
T KOG0744|consen 331 AIYEILKSCI 340 (423)
T ss_pred HHHHHHHHHH
Confidence 8888886543
No 215
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.7e-10 Score=109.98 Aligned_cols=202 Identities=19% Similarity=0.202 Sum_probs=145.7
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeecCCC--
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASDD-- 124 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~~~-- 124 (382)
.++.-|-..++-++|+++.+..+.+.+......|-++.|+||+|||.++..+|..+...++ .+..++.++....
T Consensus 160 lt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA 239 (786)
T COG0542 160 LTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA 239 (786)
T ss_pred hHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc
Confidence 3344456778999999999999999998888878999999999999999999999864332 2334455543221
Q ss_pred --cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCceEEEEeec
Q 016800 125 --RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 125 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
....+..+.++......... +..|+||||+|.+- .++.|.|...|... ...+|.+|+
T Consensus 240 GakyRGeFEeRlk~vl~ev~~~----------~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT 307 (786)
T COG0542 240 GAKYRGEFEERLKAVLKEVEKS----------KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATT 307 (786)
T ss_pred cccccCcHHHHHHHHHHHHhcC----------CCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEecc
Confidence 11122333333333222111 46799999999871 44778888888754 345666664
Q ss_pred C-----ccccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcC------CCHHHHHHHHH
Q 016800 194 Y-----ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQ------GDLRRAITYLQ 258 (382)
Q Consensus 194 ~-----~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~------gdlr~a~~~l~ 258 (382)
. .-.-++++-+|++.+.+..|+.++...+|+-+..+ +++.++++++...+.+|. -=|.+|+.+++
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiD 387 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLD 387 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHH
Confidence 2 12356899999999999999999999999876654 578899999999998873 34678999999
Q ss_pred HHHHhc
Q 016800 259 GAARLF 264 (382)
Q Consensus 259 ~~~~~~ 264 (382)
.++...
T Consensus 388 eA~a~~ 393 (786)
T COG0542 388 EAGARV 393 (786)
T ss_pred HHHHHH
Confidence 888654
No 216
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.23 E-value=3.1e-10 Score=104.55 Aligned_cols=155 Identities=23% Similarity=0.196 Sum_probs=99.7
Q ss_pred CcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHh
Q 016800 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (382)
..++|+++++......+..++ |++|.||||+|||++++.+++.+ +.++..+.+.......++-.........
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l------~~~~~~i~~t~~l~p~d~~G~~~~~~~~ 95 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL------GLPFVRIQCTPDLLPSDLLGTYAYAALL 95 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh------CCCeEEEecCCCCCHHHhcCchhHhhhh
Confidence 347889888888877777776 79999999999999999999998 3566777765433322221110000000
Q ss_pred --hhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc------------CCceEEEEeecC-----ccccchh
Q 016800 141 --AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------------SKVTRFFFICNY-----ISRIIEP 201 (382)
Q Consensus 141 --~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~------------~~~~~~Il~~~~-----~~~l~~~ 201 (382)
........+....+-..++++||+++.++..+++|+..|++. +....+|.++|+ ...+.++
T Consensus 96 ~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA 175 (329)
T COG0714 96 LEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEA 175 (329)
T ss_pred ccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHH
Confidence 000000011111111149999999999999999999999972 123334444563 3457899
Q ss_pred hhccc-ceEEecCCCHHHHHHHH
Q 016800 202 LASRC-AKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 202 l~sr~-~~i~~~~~~~~~~~~~l 223 (382)
+.+|| ..+.++.|..++....+
T Consensus 176 ~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 176 LLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred HHhhEEEEEecCCCCchHHHHHH
Confidence 99999 68888888555444444
No 217
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.23 E-value=3.8e-11 Score=100.11 Aligned_cols=164 Identities=16% Similarity=0.212 Sum_probs=114.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
++|+|+.-.-+...++.+.+.+..++.....+..++..+.. . .+.+......+.. +++++|+|.++
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~---~~l~~~~~s~slF----------~~~klvii~~~ 66 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDD-I---DELLEELQSPSLF----------GDKKLVIIKNA 66 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-H-H---H-HTTTSTTTTSS----------SSEEEEEEE--
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCc-H---HHHHHHHhcCCcc----------CCCeEEEEecC
Confidence 68999999899999999999876665544555656555431 1 1122222222222 27899999998
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCceEEEEeec-Ccc---ccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCH
Q 016800 165 ----DSMTEDAQNALRRTMETYSKVTRFFFICN-YIS---RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA 236 (382)
Q Consensus 165 ----d~l~~~~~~~Ll~~le~~~~~~~~Il~~~-~~~---~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (382)
+....+..+.|..+++.+++++.+|+.++ ..+ ++.+.+.+.+.++.|.++...++..|++..+++.|+.+++
T Consensus 67 ~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~ 146 (172)
T PF06144_consen 67 PFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDP 146 (172)
T ss_dssp ---TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-H
T ss_pred ccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 55667788999999999999988888887 333 4677888888899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 237 EALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 237 ~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+++..+++..++|++.+.+.+++++.
T Consensus 147 ~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 147 DAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 99999999999999999999998763
No 218
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.22 E-value=9.6e-10 Score=108.03 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=84.1
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---------------------CceEEEEeecCc--cccchhhhcccc---
Q 016800 154 PPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--SRIIEPLASRCA--- 207 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------------------~~~~~Il~~~~~--~~l~~~l~sr~~--- 207 (382)
+...+++|||++.|++..|..|++.|++.. -.+++|++++.. ..+.+.+.+|+.
T Consensus 225 AnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~ 304 (637)
T PRK13765 225 AHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYG 304 (637)
T ss_pred CCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCe
Confidence 355799999999999999999999996432 245678888764 446788888875
Q ss_pred -eEEecC---CCHHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHhc---CCC-------HHHHHHHHHHHHHhc----
Q 016800 208 -KFRFKP---LSEEVMSSRVLHICNEE-----GLNLDAEALSTLSSIS---QGD-------LRRAITYLQGAARLF---- 264 (382)
Q Consensus 208 -~i~~~~---~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~l~~~s---~gd-------lr~a~~~l~~~~~~~---- 264 (382)
.+.|+. -+.+....++..+++.. -..++++++..|++.+ .|+ .|.+.+++..+...+
T Consensus 305 v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~ 384 (637)
T PRK13765 305 YEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG 384 (637)
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhc
Confidence 355553 33566666766555432 2368999998888754 222 666666666654433
Q ss_pred CCCCChhhHhhhh
Q 016800 265 GSSITSKDLISVS 277 (382)
Q Consensus 265 ~~~It~~~v~~~~ 277 (382)
...++.++|.++.
T Consensus 385 ~~~i~~~~v~~a~ 397 (637)
T PRK13765 385 AELTTAEHVLEAK 397 (637)
T ss_pred cceecHHHHHHHH
Confidence 3457778877665
No 219
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.6e-10 Score=105.47 Aligned_cols=190 Identities=14% Similarity=0.141 Sum_probs=124.2
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
.++++|+||+|+|||.+++++++++..+......++.....+....+.+...+.......... .+.||++
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~----------~PSiIvL 500 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY----------APSIIVL 500 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhh----------CCcEEEE
Confidence 345999999999999999999999975544333333333334444566666666655444333 5579999
Q ss_pred eCCCCCCHH-------------HHHH-HHHHHHh---cCCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHH
Q 016800 162 DEADSMTED-------------AQNA-LRRTMET---YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSS 221 (382)
Q Consensus 162 De~d~l~~~-------------~~~~-Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~ 221 (382)
|++|.+-.. ..+. |.+.+.. ......||.+++....+.+.+.| +++ ++.+++|...+...
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 999988320 1122 2233333 23445677777877778877776 344 78999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHHHHhc--------CCCCChhhHhhhhCCCC
Q 016800 222 RVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQGAARLF--------GSSITSKDLISVSGVIP 281 (382)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~l~~~s~gd-lr~a~~~l~~~~~~~--------~~~It~~~v~~~~~~~~ 281 (382)
+|...+++.......+.++.++..++|- .+++....+.+...+ .+.+|.+++.+.+....
T Consensus 581 IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 581 ILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 9999998876666778888888888774 344444444443322 12456666665554333
No 220
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.21 E-value=4.7e-10 Score=107.60 Aligned_cols=157 Identities=24% Similarity=0.328 Sum_probs=97.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-chHHHHHHH--
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-GINVVRTKI-- 134 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l-- 134 (382)
..|+++.|++.+++.+...+..+ .+++|.||||+|||++++.+...+.. ......++....... +....+..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp~--~~~~~~le~~~i~s~~g~~~~~~~~~~ 264 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILPP--LTNEEAIETARIWSLVGKLIDRKQIKQ 264 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccCC--CCCcEEEeccccccchhhhcccccccc
Confidence 47899999999988888766544 36999999999999999999876521 111112221111000 000000000
Q ss_pred HHHH-------H-hhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------CceEEEEe
Q 016800 135 KTFA-------A-VAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFI 191 (382)
Q Consensus 135 ~~~~-------~-~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~ 191 (382)
..|. . ...+++ ...+.+......+++|||++.+++..++.|+..||+.. ..+.+|.+
T Consensus 265 ~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa 344 (499)
T TIGR00368 265 RPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAA 344 (499)
T ss_pred CCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEe
Confidence 0000 0 000111 11222333456799999999999999999999998642 45677887
Q ss_pred ecCc-----------------------cccchhhhcccc-eEEecCCCHHH
Q 016800 192 CNYI-----------------------SRIIEPLASRCA-KFRFKPLSEEV 218 (382)
Q Consensus 192 ~~~~-----------------------~~l~~~l~sr~~-~i~~~~~~~~~ 218 (382)
+|+- .++..+|.+|+. .+.+++++.++
T Consensus 345 ~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 345 MNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred cCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 7642 147889999998 67888776544
No 221
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.21 E-value=1.4e-09 Score=105.65 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=95.2
Q ss_pred CcccCcHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch-
Q 016800 61 KDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI- 127 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~------------~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~- 127 (382)
..+.|++.++..+.-.+-.|.. .|+||+|+||+|||++++.+++..... .+......+..+.
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~~~~~~~l~ 277 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGKGSSAVGLT 277 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCCCCCcCCcc
Confidence 4678999988877766655421 279999999999999999999875211 1111000110010
Q ss_pred -HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------CceEEEEeec
Q 016800 128 -NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICN 193 (382)
Q Consensus 128 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~ 193 (382)
...++.. . ... ....+....+...+++|||++.+++..+..|+..||+.. ..+.+|.++|
T Consensus 278 ~~~~~~~~---~-g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~N 351 (509)
T smart00350 278 AAVTRDPE---T-REF--TLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAAN 351 (509)
T ss_pred ccceEccC---c-ceE--EecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeC
Confidence 0001100 0 000 000111222356799999999999999999999998642 4567788887
Q ss_pred Ccc-------------ccchhhhcccce--EEecCCCHHHHHHHHHHH
Q 016800 194 YIS-------------RIIEPLASRCAK--FRFKPLSEEVMSSRVLHI 226 (382)
Q Consensus 194 ~~~-------------~l~~~l~sr~~~--i~~~~~~~~~~~~~l~~~ 226 (382)
+.. .+.+++.||+.. +-.++++.+.-..++.++
T Consensus 352 P~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i 399 (509)
T smart00350 352 PIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHV 399 (509)
T ss_pred CCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHH
Confidence 642 488999999963 444566665555555544
No 222
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2e-09 Score=102.59 Aligned_cols=208 Identities=16% Similarity=0.195 Sum_probs=137.3
Q ss_pred CcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC---
Q 016800 61 KDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD--- 124 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~--- 124 (382)
.++.|-......+...+.- + +.| .+|+|||||+|||.++++++++. ...++.++++..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~------~a~~~~i~~peli~k 257 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY------GAFLFLINGPELISK 257 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh------CceeEecccHHHHHh
Confidence 5666666666666555531 1 222 39999999999999999999987 344556666531
Q ss_pred ---cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH----------HHHHHHHHHHHhcC--CceEEE
Q 016800 125 ---RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----------DAQNALRRTMETYS--KVTRFF 189 (382)
Q Consensus 125 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~Ll~~le~~~--~~~~~I 189 (382)
.....++..+....... .+.+++|||+|.+.+ .....|+.+++.-. .+++++
T Consensus 258 ~~gEte~~LR~~f~~a~k~~-------------~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl 324 (693)
T KOG0730|consen 258 FPGETESNLRKAFAEALKFQ-------------VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVL 324 (693)
T ss_pred cccchHHHHHHHHHHHhccC-------------CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEE
Confidence 11223333333322111 256999999999863 23567888888655 677777
Q ss_pred EeecCccccchhhhc-ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH-HHHHHHHHhcCC
Q 016800 190 FICNYISRIIEPLAS-RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI-TYLQGAARLFGS 266 (382)
Q Consensus 190 l~~~~~~~l~~~l~s-r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~-~~l~~~~~~~~~ 266 (382)
.++|.++.+.+.+++ |+. .+.+.-|+..+..++++..++..+.. ++..+..++..+.|-...=+ .++..++..+..
T Consensus 325 ~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r 403 (693)
T KOG0730|consen 325 AATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATR 403 (693)
T ss_pred EecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhh
Confidence 788999999999997 776 78999999999999999988877754 56778888888877664333 233323222211
Q ss_pred CCChhhHhhhhCCCCHHHHHHHH
Q 016800 267 SITSKDLISVSGVIPPEVVEGLF 289 (382)
Q Consensus 267 ~It~~~v~~~~~~~~~~~~~~~~ 289 (382)
. +++++..+...+.+..+.+.+
T Consensus 404 ~-~~~~~~~A~~~i~psa~Re~~ 425 (693)
T KOG0730|consen 404 R-TLEIFQEALMGIRPSALREIL 425 (693)
T ss_pred h-hHHHHHHHHhcCCchhhhhee
Confidence 1 555666666655555544443
No 223
>PRK15115 response regulator GlrR; Provisional
Probab=99.19 E-value=8.2e-09 Score=99.52 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=129.6
Q ss_pred cccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (382)
.++|....+..+...+.. ...++++++|++|+||+++|+.+.+.... ....++.+++... ....+...+-....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r---~~~~f~~i~c~~~-~~~~~~~~lfg~~~ 210 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR---ASKPFIAINCGAL-PEQLLESELFGHAR 210 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC---CCCCeEEEeCCCC-CHHHHHHHhcCCCc
Confidence 466665544444333322 22234999999999999999999886421 2356888888764 22222221111000
Q ss_pred hhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------ccc
Q 016800 140 VAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RII 199 (382)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~ 199 (382)
....+. ...+.+......+++|||++.|+...|..|++.+++.. ..+++|++++..- .+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (444)
T PRK15115 211 GAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFR 290 (444)
T ss_pred CCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCcc
Confidence 000000 01112223355699999999999999999999998643 1457888776421 122
Q ss_pred hhhhcccc--eEEecCCCH--HHHHHHHHHH----HHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-CC
Q 016800 200 EPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (382)
Q Consensus 200 ~~l~sr~~--~i~~~~~~~--~~~~~~l~~~----~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~-~~ 266 (382)
+.+..|.. .+.++|+.. +++..++... +...+. .+++++++.|..+. .||+|.+.+.++.++..+ +.
T Consensus 291 ~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~ 370 (444)
T PRK15115 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSP 370 (444)
T ss_pred HHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 33444444 556666654 4554444333 333332 48999999999988 999999999999987655 55
Q ss_pred CCChhhHhhh
Q 016800 267 SITSKDLISV 276 (382)
Q Consensus 267 ~It~~~v~~~ 276 (382)
.|+.+++...
T Consensus 371 ~i~~~~l~~~ 380 (444)
T PRK15115 371 VISDALVEQA 380 (444)
T ss_pred ccChhhhhhh
Confidence 7887776543
No 224
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.17 E-value=2.8e-10 Score=105.90 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=97.4
Q ss_pred CCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceEEeecCCC------------cc
Q 016800 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDD------------RG 126 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~-~~~~~~~~~~~~~------------~~ 126 (382)
++++++.+...+.+...+..++ +++|+||||||||++|+.++..+.+... .....+.+..... .+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 5678888888888888887654 7999999999999999999998854321 1112222222110 00
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHh----------------------cC
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA-QNALRRTMET----------------------YS 183 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~----------------------~~ 183 (382)
.......+..+...+... ..++.++||||+++.+.+. ...++.+||. .|
T Consensus 252 y~~~~G~f~~~~~~A~~~--------p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKEQ--------PEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred eEecCchHHHHHHHHHhc--------ccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 000000111111111111 0145799999999998654 5666666662 13
Q ss_pred CceEEEEeecCcc----ccchhhhcccceEEecC-CCHHHHHHHH
Q 016800 184 KVTRFFFICNYIS----RIIEPLASRCAKFRFKP-LSEEVMSSRV 223 (382)
Q Consensus 184 ~~~~~Il~~~~~~----~l~~~l~sr~~~i~~~~-~~~~~~~~~l 223 (382)
.++.||.+.|..+ .+..++++|+..+++.| ++...+..++
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l 368 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFL 368 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHH
Confidence 5667788877766 47899999999999887 4556667766
No 225
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.17 E-value=2.2e-09 Score=104.08 Aligned_cols=210 Identities=20% Similarity=0.234 Sum_probs=136.3
Q ss_pred CcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (382)
..++|.......+.+.+.. +....+++.|++||||+++|+++...... ....++.+|+... ..+.+...+-...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~---~~~~~~~~~c~~~-~~~~~~~~lfg~~ 209 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR---ANGPFIALNMAAI-PKDLIESELFGHE 209 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC---CCCCeEEEeCCCC-CHHHHHHHhcCCC
Confidence 4577776666555544433 22224899999999999999999886421 2356788888764 2222222220000
Q ss_pred HhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------cc
Q 016800 139 AVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RI 198 (382)
Q Consensus 139 ~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l 198 (382)
.....+. ...+.+.......++|||++.++.+.|..|++++++.. ..+++|++++... .+
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f 289 (463)
T TIGR01818 210 KGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKF 289 (463)
T ss_pred CCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCc
Confidence 0000000 01111222345689999999999999999999998642 2457888876432 23
Q ss_pred chhhhcccc--eEEecCCC--HHHHHHHHHHHH----HHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-C
Q 016800 199 IEPLASRCA--KFRFKPLS--EEVMSSRVLHIC----NEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-G 265 (382)
Q Consensus 199 ~~~l~sr~~--~i~~~~~~--~~~~~~~l~~~~----~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~-~ 265 (382)
.+.+..|.. .+.++|+. .+++..++...+ ...+ ..++++++..|..+. .||+|.+.+.++.++..+ +
T Consensus 290 ~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 290 REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 456666665 77888887 567776665543 3333 358999999998876 899999999999988765 4
Q ss_pred CCCChhhHh
Q 016800 266 SSITSKDLI 274 (382)
Q Consensus 266 ~~It~~~v~ 274 (382)
..|+.+++.
T Consensus 370 ~~i~~~~l~ 378 (463)
T TIGR01818 370 DEVLVSDLP 378 (463)
T ss_pred CcccHHhch
Confidence 568877764
No 226
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.17 E-value=2.3e-11 Score=97.62 Aligned_cols=114 Identities=25% Similarity=0.287 Sum_probs=72.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCC--CCCcEEEEE
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIIL 161 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vlii 161 (382)
+++|+||||+|||++++.+++.+ ...+..++.........+.. .+...........+.+. ..+..+++|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g---~~~~~~~~~~~~~~~l~~a~~~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIG---SYDPSNGQFEFKDGPLVRAMRKGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHC---EEET-TTTTCEEE-CCCTTHHEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh------hcceEEEEecccccccccee---eeeecccccccccccccccccceeEEEE
Confidence 48999999999999999999998 35566666655433332211 10000000000011111 115679999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcC-------------C------ceEEEEeecCcc----ccchhhhccc
Q 016800 162 DEADSMTEDAQNALRRTMETYS-------------K------VTRFFFICNYIS----RIIEPLASRC 206 (382)
Q Consensus 162 De~d~l~~~~~~~Ll~~le~~~-------------~------~~~~Il~~~~~~----~l~~~l~sr~ 206 (382)
||++..+++.++.|+.++++.. . +.++|+++|+.. .+.+++++||
T Consensus 72 DEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp SSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred CCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 9999999999999999998431 1 278888888877 7889999986
No 227
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.15 E-value=6.6e-11 Score=97.73 Aligned_cols=103 Identities=26% Similarity=0.401 Sum_probs=68.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
+++|.||+|+|||.+|+++++.+. +. ...++.+|++....-+.....+..+........ . .....||++|
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~---~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v----~--~~~~gVVllD 75 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGS---ERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYV----G--AEEGGVVLLD 75 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SS---CCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHH----H--HHHHTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCC---ccchHHHhhhcccccchHHhhhhhhhhccccee----e--ccchhhhhhH
Confidence 589999999999999999999996 33 246777887654442221122222111110000 0 0022399999
Q ss_pred CCCCCCH-----------HHHHHHHHHHHhcC-----------CceEEEEeecCc
Q 016800 163 EADSMTE-----------DAQNALRRTMETYS-----------KVTRFFFICNYI 195 (382)
Q Consensus 163 e~d~l~~-----------~~~~~Ll~~le~~~-----------~~~~~Il~~~~~ 195 (382)
|+|+..+ ..++.|++++|+.. .++.||+++|-.
T Consensus 76 EidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 76 EIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp TGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred HHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9999999 99999999999542 467788888754
No 228
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.14 E-value=3.1e-09 Score=102.87 Aligned_cols=211 Identities=21% Similarity=0.215 Sum_probs=131.1
Q ss_pred CCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHH
Q 016800 60 VKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (382)
+..++|....+..+.+.+.... ..+++++|++|+||+++|+++...... ....++.+++.... ...+...+-..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~~~i~c~~~~-~~~~~~~lfg~ 217 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR---AKGPFIKVNCAALP-ESLLESELFGH 217 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC---CCCCeEEEECCCCC-HHHHHHHhcCC
Confidence 3457777665555554443322 224999999999999999999875421 23567888887642 22222211000
Q ss_pred HHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------c
Q 016800 138 AAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------R 197 (382)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~ 197 (382)
......+. ...+.+......+++|||++.++...|..|+..+++.. .++++|++++... .
T Consensus 218 ~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~ 297 (457)
T PRK11361 218 EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGT 297 (457)
T ss_pred CCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCC
Confidence 00000000 01122333355799999999999999999999998642 2467888886431 2
Q ss_pred cchhhhcccc--eEEecCCCH--HHHHHHH----HHHHHHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-
Q 016800 198 IIEPLASRCA--KFRFKPLSE--EVMSSRV----LHICNEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF- 264 (382)
Q Consensus 198 l~~~l~sr~~--~i~~~~~~~--~~~~~~l----~~~~~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~- 264 (382)
+.+.+..|+. .+.++|+.. +++..++ .+.....+ ..+++++++.+..+. .||+|.+.+.++.+...+
T Consensus 298 ~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~ 377 (457)
T PRK11361 298 FREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS 377 (457)
T ss_pred chHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence 3344555544 566666653 4454433 33333323 358999999988876 899999999999887655
Q ss_pred CCCCChhhHh
Q 016800 265 GSSITSKDLI 274 (382)
Q Consensus 265 ~~~It~~~v~ 274 (382)
+..|+.+++.
T Consensus 378 ~~~i~~~~l~ 387 (457)
T PRK11361 378 GPIIFSEDLP 387 (457)
T ss_pred CCcccHHHCh
Confidence 4567777664
No 229
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.10 E-value=2.6e-09 Score=96.98 Aligned_cols=95 Identities=9% Similarity=-0.047 Sum_probs=65.1
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------cccchhhhcccceEEe
Q 016800 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRIIEPLASRCAKFRF 211 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~l~~~l~sr~~~i~~ 211 (382)
.+..+.+.++-++|+.+.+.+.++.|+..+++.. ....||.++|.. .+..+++++||..+.+
T Consensus 231 ~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~v 310 (361)
T smart00763 231 ALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKV 310 (361)
T ss_pred ccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeC
Confidence 3445677899999999999999999999998542 123466667655 3568999999998888
Q ss_pred cCCCH-HHHHHHHHHHHHHh---CCCCCHHHHHHHHH
Q 016800 212 KPLSE-EVMSSRVLHICNEE---GLNLDAEALSTLSS 244 (382)
Q Consensus 212 ~~~~~-~~~~~~l~~~~~~~---~~~~~~~~~~~l~~ 244 (382)
+.+.. .+-.++.++.+... +..+.+.+++.++.
T Consensus 311 pY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~ 347 (361)
T smart00763 311 PYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAAL 347 (361)
T ss_pred CCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHH
Confidence 76654 44455555555432 34455555554443
No 230
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.09 E-value=5.7e-09 Score=102.84 Aligned_cols=200 Identities=18% Similarity=0.133 Sum_probs=118.7
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcC-CCCCCC
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGG 150 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~ 150 (382)
.|.-..-+....|+||.|++|+|||++++++++.+... ..++.+..... .+.+-..+.-......+. ....+.
T Consensus 6 Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~t--~d~L~G~idl~~~~~~g~~~~~~G~ 79 (589)
T TIGR02031 6 ALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGVT--EDRLIGGIDVEESLAGGQRVTQPGL 79 (589)
T ss_pred HHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCcccc--hhhcccchhhhhhhhcCcccCCCCC
Confidence 33333344557789999999999999999999976321 13444443110 011000000000000000 001122
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------CceEEEEeecCcc---ccchhhhcccce-EEecC
Q 016800 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNYIS---RIIEPLASRCAK-FRFKP 213 (382)
Q Consensus 151 ~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~---~l~~~l~sr~~~-i~~~~ 213 (382)
+......+++|||++.+++..++.|+..|++.. ..+.+|.++|... .+.+.+..|+.. +.+..
T Consensus 80 L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~ 159 (589)
T TIGR02031 80 LDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLED 159 (589)
T ss_pred eeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCC
Confidence 222355699999999999999999999998653 3456676666654 688899999873 44443
Q ss_pred C-CHHHHHHHHHHHH---------------------H--HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHhc-
Q 016800 214 L-SEEVMSSRVLHIC---------------------N--EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF- 264 (382)
Q Consensus 214 ~-~~~~~~~~l~~~~---------------------~--~~~~~~~~~~~~~l~~~s---~-gdlr~a~~~l~~~~~~~- 264 (382)
+ +.++..+++.... + ...+.++++.++.|+..+ + ..+|..+..+..+...+
T Consensus 160 ~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aa 239 (589)
T TIGR02031 160 VASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAA 239 (589)
T ss_pred CCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH
Confidence 3 4444344443321 1 124678888888887654 2 23677776665443333
Q ss_pred ---CCCCChhhHhhhh
Q 016800 265 ---GSSITSKDLISVS 277 (382)
Q Consensus 265 ---~~~It~~~v~~~~ 277 (382)
...++.+||+.++
T Consensus 240 l~gr~~V~~~Dv~~a~ 255 (589)
T TIGR02031 240 LHGRTEVTEEDLKLAV 255 (589)
T ss_pred HhCCCCCCHHHHHHHH
Confidence 4679999998877
No 231
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.09 E-value=1.4e-10 Score=96.64 Aligned_cols=96 Identities=27% Similarity=0.337 Sum_probs=59.5
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-------chHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-------GINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (382)
...+++|+||+|+|||++|.++++++...+ ..+..++..+.. ........+..+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--------------- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITASDLLDELKQSRSDGSYEELLKRLK--------------- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH---------------
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeecCceeccccccccccchhhhcCccc---------------
Confidence 334699999999999999999999885432 334444432110 0001112222222
Q ss_pred CCcEEEEEeCCCCC--CHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 154 PPYKIIILDEADSM--TEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 154 ~~~~vliiDe~d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
+..++||||+... +....+.|+.+++....+...|++||..
T Consensus 108 -~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 108 -RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp -TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred -cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 4569999999876 4556778889998766555688888854
No 232
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.3e-09 Score=106.04 Aligned_cols=192 Identities=20% Similarity=0.157 Sum_probs=126.8
Q ss_pred CCCcccCcHHHHHHHHHHHHcC------------CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-
Q 016800 59 QVKDVAHQEEVVRVLTNTLETA------------NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~------------~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (382)
.|+++-|.+.++..|...+-.. ..|. +||+||||||||..|++++...-.. .....+..-.+++-
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~-~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRG-NRKISFFMRKGADCL 341 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccc-ccccchhhhcCchhh
Confidence 6788888888888777765321 2334 9999999999999999999986321 11112221222221
Q ss_pred -cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhcC--CceEEEE
Q 016800 125 -RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KVTRFFF 190 (382)
Q Consensus 125 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~~--~~~~~Il 190 (382)
..+......+..++..+... .+-|+++||+|.+.+ ....-|+.+|+.-+ +.+++|-
T Consensus 342 skwvgEaERqlrllFeeA~k~----------qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvig 411 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQKT----------QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIG 411 (1080)
T ss_pred ccccCcHHHHHHHHHHHHhcc----------CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEc
Confidence 11122222233333222211 556999999998742 12345777777543 4566777
Q ss_pred eecCccccchhhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 191 ICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 191 ~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
+||.++.+.+++++... .+.|+-++.+...+++.-.-.++.-.++......+++.+.|-.+.-+..|...+
T Consensus 412 ATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeA 485 (1080)
T KOG0732|consen 412 ATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEA 485 (1080)
T ss_pred ccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHH
Confidence 78999999999988554 789999998888888876666666778889999999988777776655544433
No 233
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.07 E-value=3.7e-10 Score=92.96 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=76.7
Q ss_pred ccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHh
Q 016800 63 VAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (382)
++|....++.+.+.++.- ...+++|+|++||||+.+|+++.+... ....+++.+||... ..+.+...+ +..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~---r~~~pfi~vnc~~~-~~~~~e~~L---FG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP---RKNGPFISVNCAAL-PEELLESEL---FGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST---TTTS-EEEEETTTS--HHHHHHHH---HEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh---cccCCeEEEehhhh-hcchhhhhh---hcc
Confidence 467767776666665442 223499999999999999999988532 12467899999865 223222211 111
Q ss_pred hhc---CCC--CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecCc
Q 016800 141 AVG---SGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI 195 (382)
Q Consensus 141 ~~~---~~~--~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~ 195 (382)
... ... ..+.+......+++|||++.|++..|..|+++|++. +.++++|++|+..
T Consensus 74 ~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 100 000 011112236679999999999999999999999964 2367788888753
No 234
>PRK12377 putative replication protein; Provisional
Probab=99.07 E-value=1.2e-09 Score=95.34 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=77.1
Q ss_pred hhcCCCCCCccc----CcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 53 EKYRPKQVKDVA----HQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 53 ~k~~p~~~~~~~----g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
+.+...+|+.+. |+..++.....++.. ....+++|+||||||||+++.++++.+...+ ..+..++..+.
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l-- 140 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDV-- 140 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHH--
Confidence 445556787775 334445444444332 1234699999999999999999999986432 23344433321
Q ss_pred hHHHHHHHHHH-HHhhhcCCCCCCCCCCCCcEEEEEeCC--CCCCHHHHHHHHHHHHhcCC-ceEEEEeecCc
Q 016800 127 INVVRTKIKTF-AAVAVGSGQRRGGYPCPPYKIIILDEA--DSMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (382)
Q Consensus 127 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vliiDe~--d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~ 195 (382)
...++.....- ..... ...+ ....+|||||+ +..+...++.|+.+++.... ....|++||..
T Consensus 141 ~~~l~~~~~~~~~~~~~-----l~~l--~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 141 MSRLHESYDNGQSGEKF-----LQEL--CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHHHHhccchHHHH-----HHHh--cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11121111000 00000 0000 15579999999 45577788999999998765 35578888854
No 235
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.9e-09 Score=92.88 Aligned_cols=173 Identities=23% Similarity=0.299 Sum_probs=105.2
Q ss_pred cccCcHHHHHHHHHHH--------Hc---C----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-
Q 016800 62 DVAHQEEVVRVLTNTL--------ET---A----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR- 125 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l--------~~---~----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~- 125 (382)
-++||+..++.|.-++ .. . ..+|+|+.||+|+|||.+|+.+|+.+. .+|.--++....
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln------VPFaiADATtLTE 135 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN------VPFAIADATTLTE 135 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC------CCeeeccccchhh
Confidence 4668988886552211 11 1 234699999999999999999999984 333322332110
Q ss_pred ---chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------------HHHHHHHHHHHHhc-----C
Q 016800 126 ---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETY-----S 183 (382)
Q Consensus 126 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------------~~~~~~Ll~~le~~-----~ 183 (382)
--+++.+.+..+.+..-.. ...+.+.+|+|||+|++. ...|++|++++|.. |
T Consensus 136 AGYVGEDVENillkLlqaadyd------V~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPP 209 (408)
T COG1219 136 AGYVGEDVENILLKLLQAADYD------VERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPP 209 (408)
T ss_pred ccccchhHHHHHHHHHHHcccC------HHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCC
Confidence 1134444444444332111 112266799999999984 34699999999831 1
Q ss_pred --------------CceEEEEee------------------------cCc----------------------cccchhhh
Q 016800 184 --------------KVTRFFFIC------------------------NYI----------------------SRIIEPLA 203 (382)
Q Consensus 184 --------------~~~~~Il~~------------------------~~~----------------------~~l~~~l~ 203 (382)
+.+.++|+| +.. +.+.|.+.
T Consensus 210 qGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfI 289 (408)
T COG1219 210 QGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFI 289 (408)
T ss_pred CCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHh
Confidence 112233333 000 01456777
Q ss_pred cccc-eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc
Q 016800 204 SRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS 246 (382)
Q Consensus 204 sr~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s 246 (382)
-|.. +..+.+++.+.+.++|.. .+.-+++ .++++++..+++.+
T Consensus 290 GRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 290 GRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred cccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHH
Confidence 7777 568899999999888764 1222344 47889998888755
No 236
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.06 E-value=3.2e-08 Score=84.23 Aligned_cols=217 Identities=19% Similarity=0.197 Sum_probs=136.2
Q ss_pred hhccccccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEE
Q 016800 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (382)
Q Consensus 39 ~~~~~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~ 118 (382)
+.++.....+.|+....+|.-+-..--+.+.+..+...+..++. .+.++|+-|+|||.+.+++...+..... .++.
T Consensus 9 ~~l~~~g~~~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~qg-~~~vtGevGsGKTv~~Ral~~s~~~d~~---~~v~ 84 (269)
T COG3267 9 MLLNHFGFSRLPFSWDIQPGLDYWAADHNEALLMLHAAIADGQG-ILAVTGEVGSGKTVLRRALLASLNEDQV---AVVV 84 (269)
T ss_pred HHHHHhhhccCCCccchhhhhhhhhhhhhHHHHHHHHHHhcCCc-eEEEEecCCCchhHHHHHHHHhcCCCce---EEEE
Confidence 34444556677777766665444444567788888888877763 4899999999999999977777643321 2233
Q ss_pred eecCCCcchHHHHHHHHHHHHhhhcCCCC----------CCCCCCCCc-EEEEEeCCCCCCHHHHHHHHHHHH---hcCC
Q 016800 119 LNASDDRGINVVRTKIKTFAAVAVGSGQR----------RGGYPCPPY-KIIILDEADSMTEDAQNALRRTME---TYSK 184 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~-~vliiDe~d~l~~~~~~~Ll~~le---~~~~ 184 (382)
++.............+..+.. .+..... ......+++ .++++||++.++.+....|+.+.+ +...
T Consensus 85 i~~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~ 163 (269)
T COG3267 85 IDKPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSK 163 (269)
T ss_pred ecCcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccC
Confidence 433321111111111111110 0000000 000001134 799999999999988887776654 4445
Q ss_pred ceEEEEeecCc------cccchhhhcccce-EEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCHHHHH
Q 016800 185 VTRFFFICNYI------SRIIEPLASRCAK-FRFKPLSEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 185 ~~~~Il~~~~~------~~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~s~gdlr~a~ 254 (382)
...+++++.+. ......+..|+.. +..+|++.++...+|+.+++..+.. ++++++..+...+.|-|+ ++
T Consensus 164 ~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~-li 242 (269)
T COG3267 164 LLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPR-LI 242 (269)
T ss_pred ceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchH-HH
Confidence 55677776432 1134566778887 9999999999999999998876543 688999999999999665 45
Q ss_pred HHHHHHH
Q 016800 255 TYLQGAA 261 (382)
Q Consensus 255 ~~l~~~~ 261 (382)
|.+...+
T Consensus 243 n~~~~~A 249 (269)
T COG3267 243 NNLATLA 249 (269)
T ss_pred HHHHHHH
Confidence 5554444
No 237
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.4e-09 Score=93.10 Aligned_cols=172 Identities=23% Similarity=0.258 Sum_probs=104.7
Q ss_pred CCCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
..+|+++-|.-.+...|+.-+.- + .+|. ++||||||+|||.+++++++.+ +.+++...++.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m------g~nfl~v~ss~ 201 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM------GVNFLKVVSSA 201 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc------CCceEEeeHhh
Confidence 34788888888888888776632 1 2333 8999999999999999999997 34455444432
Q ss_pred C------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc----
Q 016800 124 D------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY---- 182 (382)
Q Consensus 124 ~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~---- 182 (382)
. .+..-+++........ -..++++||+|... ...+.-|..+++.-
T Consensus 202 lv~kyiGEsaRlIRemf~yA~~~--------------~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd 267 (388)
T KOG0651|consen 202 LVDKYIGESARLIRDMFRYAREV--------------IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD 267 (388)
T ss_pred hhhhhcccHHHHHHHHHHHHhhh--------------CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch
Confidence 1 1122344433332221 34799999999762 23455566665532
Q ss_pred -CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhcCC
Q 016800 183 -SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSISQG 248 (382)
Q Consensus 183 -~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~s~g 248 (382)
-..+.+|+++|.++.+.++|.+ |.. .++.+.|...--..+++-....- .-.++.+++-.+.+..+|
T Consensus 268 ~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 268 TLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred hcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 2567899999999999999987 444 45555444333333322111110 012556666666665554
No 238
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.04 E-value=7.2e-09 Score=89.87 Aligned_cols=127 Identities=24% Similarity=0.307 Sum_probs=85.9
Q ss_pred cccCcHHHHHHHHHHH----HcCC--CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE----EeecCCCcchHHH
Q 016800 62 DVAHQEEVVRVLTNTL----ETAN--CPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL----ELNASDDRGINVV 130 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l----~~~~--~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 130 (382)
.+.||.-+++.+.+.+ .+.. .|- +-|+|++||||+.+++.+++.++..+..+..+. ..+.+....++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 3457655554444444 4443 233 679999999999999999999876554433332 2334444556666
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------CceEEEEeecCccc
Q 016800 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------KVTRFFFICNYISR 197 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------~~~~~Il~~~~~~~ 197 (382)
+..++.........- .+.++|+||+|+|++...+.|...++.++ ..+.||+.+|....
T Consensus 163 k~eL~~~v~~~v~~C---------~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~ 227 (344)
T KOG2170|consen 163 KEELKNRVRGTVQAC---------QRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGS 227 (344)
T ss_pred HHHHHHHHHHHHHhc---------CCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcch
Confidence 666665444333322 66799999999999999999999998543 46789999876543
No 239
>PF13173 AAA_14: AAA domain
Probab=99.03 E-value=3e-09 Score=83.93 Aligned_cols=119 Identities=26% Similarity=0.371 Sum_probs=79.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH-HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR-TKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
.++++||.|+||||+++.+++.+. ....++.++..+........ +....+... .. .+..+|+||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~i~iD 68 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPDLLEYFLEL-IK----------PGKKYIFID 68 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhhhHHHHHHh-hc----------cCCcEEEEe
Confidence 489999999999999999999874 12456677766543221110 011111111 10 045799999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccc----cchhhhcccceEEecCCCHHHH
Q 016800 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR----IIEPLASRCAKFRFKPLSEEVM 219 (382)
Q Consensus 163 e~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~----l~~~l~sr~~~i~~~~~~~~~~ 219 (382)
|++.++ +....+..+.+.. .+..||+++..... ....+..|...+++.|++-.|.
T Consensus 69 Eiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 69 EIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 999996 5666666777765 55678887765433 3466777888999999998774
No 240
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.02 E-value=7e-09 Score=93.96 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH-HHHHHHHHHHhhh
Q 016800 66 QEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV-VRTKIKTFAAVAV 142 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 142 (382)
++..++.+.+.+... ....+.|+|++|+|||++|..+++.......++ .++.++......... ....+..+.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~-~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD-GVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT-EEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc-ccccccccccccccccccccccccccccc
Confidence 356678888888773 333389999999999999999997732122121 223333332222222 2222222211100
Q ss_pred cC--CCCC-------CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecC
Q 016800 143 GS--GQRR-------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213 (382)
Q Consensus 143 ~~--~~~~-------~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~ 213 (382)
.. .... ...-.+++-++|+|+++... ..+.+...+.....++.+|+||... .+..........+++++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCG-GGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 00 0000 00001257899999987654 4444555554445567888888654 33333333366899999
Q ss_pred CCHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCHHHHHHH
Q 016800 214 LSEEVMSSRVLHICNEEG---LNLDAEALSTLSSISQGDLRRAITY 256 (382)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~~l~~~s~gdlr~a~~~ 256 (382)
++.++..+++.+.+.... ..-.++.+..|++.++|.|-.+...
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999988875444 1123456789999999977654333
No 241
>PRK08116 hypothetical protein; Validated
Probab=99.01 E-value=2.3e-09 Score=95.32 Aligned_cols=148 Identities=20% Similarity=0.250 Sum_probs=88.5
Q ss_pred hhhcCCCCCCcccCc---HHHHHHHHHHHHc----CCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 52 VEKYRPKQVKDVAHQ---EEVVRVLTNTLET----ANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 52 ~~k~~p~~~~~~~g~---~~~~~~l~~~l~~----~~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.++|+-.+|+.+... ..+.....+++.. ... ..++|+|++|+|||+++.++++.+...+ ..++.++..+
T Consensus 76 ~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ 152 (268)
T PRK08116 76 DEKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQ 152 (268)
T ss_pred CHHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHH
Confidence 356666778777533 3333444433332 211 2399999999999999999999985432 3445555432
Q ss_pred CcchHHHHHHHH--------HHHHhhhcCCCCCCCCCCCCcEEEEEeCC--CCCCHHHHHHHHHHHHhcC-CceEEEEee
Q 016800 124 DRGINVVRTKIK--------TFAAVAVGSGQRRGGYPCPPYKIIILDEA--DSMTEDAQNALRRTMETYS-KVTRFFFIC 192 (382)
Q Consensus 124 ~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~vliiDe~--d~l~~~~~~~Ll~~le~~~-~~~~~Il~~ 192 (382)
. ...+..... .+... + ....+|||||+ +..+...+..|+.+++... ....+|++|
T Consensus 153 l--l~~i~~~~~~~~~~~~~~~~~~----------l--~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTs 218 (268)
T PRK08116 153 L--LNRIKSTYKSSGKEDENEIIRS----------L--VNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTT 218 (268)
T ss_pred H--HHHHHHHHhccccccHHHHHHH----------h--cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
Confidence 1 111111110 00000 0 14469999999 5567778888999998753 335588888
Q ss_pred cCccc-----cchhhhcc----cceEEecCCCH
Q 016800 193 NYISR-----IIEPLASR----CAKFRFKPLSE 216 (382)
Q Consensus 193 ~~~~~-----l~~~l~sr----~~~i~~~~~~~ 216 (382)
|.... +...+.|| |..+.|..++.
T Consensus 219 N~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 219 NLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 76422 34567777 55777776653
No 242
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.01 E-value=3e-10 Score=86.90 Aligned_cols=111 Identities=26% Similarity=0.269 Sum_probs=57.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC---CCCCCCCCCcEEEE
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ---RRGGYPCPPYKIII 160 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~vli 160 (382)
|+||+|+||+|||++++++++.+. ..+..+......-..++. .+......... ..+.. -..|++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------~~f~RIq~tpdllPsDi~----G~~v~~~~~~~f~~~~GPi---f~~ill 67 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------LSFKRIQFTPDLLPSDIL----GFPVYDQETGEFEFRPGPI---FTNILL 67 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT--HHHHH----EEEEEETTTTEEEEEE-TT----SSEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------CceeEEEecCCCCcccce----eeeeeccCCCeeEeecChh---hhceee
Confidence 789999999999999999999973 344444432211111111 00000000000 01111 224999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-----ccchhhhcccc
Q 016800 161 LDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-----RIIEPLASRCA 207 (382)
Q Consensus 161 iDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-----~l~~~l~sr~~ 207 (382)
+||+.+.++..|.+|++.|++.. ....+|.+.|+.+ .+..++.+|+.
T Consensus 68 ~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 68 ADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp EETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 99999999999999999999763 2233444556543 46777777764
No 243
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.01 E-value=2.3e-08 Score=100.37 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=88.1
Q ss_pred CcccCcHHHHHHHHHHHHcCC---------------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceEE
Q 016800 61 KDVAHQEEVVRVLTNTLETAN---------------------CPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLE 118 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------------------~~~lll~Gp~G~GKt~la~~la~~l~~~~~-~~~~~~~ 118 (382)
..+.|++.+++.+.-.+-.|. -.|+||.|+|||||+.+|+.+++......+ ....+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 367899999987765553331 016999999999999999999885321100 0001111
Q ss_pred eecCCCcchHHHHHHHHHHHHhhhcCC-CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------C
Q 016800 119 LNASDDRGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------K 184 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~ 184 (382)
++.... . .. .. ...+.. ...+....+...+++|||++.|+...+.+|++.||+.. .
T Consensus 530 vgLTa~-----~-~~-~d---~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~a 599 (915)
T PTZ00111 530 VGLTAS-----I-KF-NE---SDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKA 599 (915)
T ss_pred ccccch-----h-hh-cc---cccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCC
Confidence 111110 0 00 00 000000 01111222355799999999999999999999998642 4
Q ss_pred ceEEEEeecCcc-------------ccchhhhcccce--EEecCCCHH
Q 016800 185 VTRFFFICNYIS-------------RIIEPLASRCAK--FRFKPLSEE 217 (382)
Q Consensus 185 ~~~~Il~~~~~~-------------~l~~~l~sr~~~--i~~~~~~~~ 217 (382)
.+++|.++|+.. .+.+++.||+.. +-++.++.+
T Consensus 600 r~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~ 647 (915)
T PTZ00111 600 ETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQD 647 (915)
T ss_pred CeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChH
Confidence 677888887632 267999999973 344444443
No 244
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.00 E-value=3.9e-09 Score=91.95 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=86.4
Q ss_pred hhhcCCCCCCccc----CcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 52 VEKYRPKQVKDVA----HQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 52 ~~k~~p~~~~~~~----g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.+.|++.+|+++. ++..++..+.++++.-. ..+++|+|++|+|||+++.+++.++...+ ..+..++..+.
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~~~l- 138 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITVADI- 138 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEHHHH-
Confidence 4567778898876 23445666666665422 23599999999999999999999985432 34444433221
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC-ceEEEEeecCccc-----
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYISR----- 197 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~----- 197 (382)
...++.... ............+ ....+|||||++... .-....|..+++.... ...+|++||....
T Consensus 139 -~~~l~~~~~---~~~~~~~~~l~~l--~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 139 -MSAMKDTFS---NSETSEEQLLNDL--SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred -HHHHHHHHh---hccccHHHHHHHh--ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 111111100 0000000000000 155699999998764 3345678888887543 5567888875422
Q ss_pred cchhhhccc-----ceEEecCC
Q 016800 198 IIEPLASRC-----AKFRFKPL 214 (382)
Q Consensus 198 l~~~l~sr~-----~~i~~~~~ 214 (382)
+.+.+.+|. ..+.|.-.
T Consensus 213 ~g~ri~sRl~~~~~~~i~f~~~ 234 (244)
T PRK07952 213 LGERVMDRMRLGNSLWVIFNWD 234 (244)
T ss_pred hChHHHHHHHHCCceEEEeeCC
Confidence 334444554 25666543
No 245
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.99 E-value=3.1e-08 Score=95.46 Aligned_cols=210 Identities=18% Similarity=0.209 Sum_probs=129.1
Q ss_pred cccCcHHHHHHHHHHHHc-C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTLET-A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~-~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (382)
.++|.......+...+.. . ....++++|++|+||+++++++...... ....++.+++.... ...+...+-....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~---~~~~~i~~~c~~~~-~~~~~~~lfg~~~ 215 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR---SEKPLVTLNCAALN-ESLLESELFGHEK 215 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC---CCCCeeeeeCCCCC-HHHHHHHhcCCCC
Confidence 456665555444433322 2 2223899999999999999999876422 23578888987642 2323222211000
Q ss_pred hhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------ccc
Q 016800 140 VAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RII 199 (382)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~ 199 (382)
....+. ...+.+......+++|||++.|+...|..|+..+++.. ..+++|++++... .+.
T Consensus 216 ~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~ 295 (441)
T PRK10365 216 GAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFR 295 (441)
T ss_pred CCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCch
Confidence 000000 01112233356789999999999999999999998643 2456777775432 233
Q ss_pred hhhhcccc--eEEecCCCH--HHHHHHHHHH----HHHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-CC
Q 016800 200 EPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (382)
Q Consensus 200 ~~l~sr~~--~i~~~~~~~--~~~~~~l~~~----~~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~-~~ 266 (382)
+.+..|+. .+.++|+.. +++..++... +...+ ..++++++..|.... .||+|.+.+.++.++..+ +.
T Consensus 296 ~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~ 375 (441)
T PRK10365 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGE 375 (441)
T ss_pred HHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 44444544 556666653 3554444443 33333 348999999999887 999999999999887655 55
Q ss_pred CCChhhHhh
Q 016800 267 SITSKDLIS 275 (382)
Q Consensus 267 ~It~~~v~~ 275 (382)
.|+.+++..
T Consensus 376 ~i~~~~l~~ 384 (441)
T PRK10365 376 YISERELPL 384 (441)
T ss_pred ccchHhCch
Confidence 788777643
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.98 E-value=4.6e-10 Score=98.78 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=95.6
Q ss_pred ccCCCC-CCCCcccccccccCCCCCchHHHHhhccccccCCchhhhhcCCCCCCccc-CcHHHHHHHHHHHH-cCCCCcE
Q 016800 9 HKSGKN-KSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA-HQEEVVRVLTNTLE-TANCPHM 85 (382)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~-g~~~~~~~l~~~l~-~~~~~~l 85 (382)
..++.. +.|.+.+++... ...+..++..+....+...+..|....+.-..|+.-- ++...+..+....+ -.+..++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl 108 (254)
T COG1484 30 LEQAADCKEWGYAEFLEYL-LEEEKLAREARKIERRLRSASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFERGENL 108 (254)
T ss_pred HHhHHHhhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhccCCcE
Confidence 344444 677777776662 2222333333333333346777776333333332111 13334444433331 1244569
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH-HHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT-FAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 86 ll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
+|+||||+|||++|.++++++. .. +..+..+..++. +..++..... ........ . -....++||||+
T Consensus 109 ~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~el--~~~Lk~~~~~~~~~~~l~~-----~--l~~~dlLIiDDl 176 (254)
T COG1484 109 VLLGPPGVGKTHLAIAIGNELL-KA--GISVLFITAPDL--LSKLKAAFDEGRLEEKLLR-----E--LKKVDLLIIDDI 176 (254)
T ss_pred EEECCCCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHHH--HHHHHHHHhcCchHHHHHH-----H--hhcCCEEEEecc
Confidence 9999999999999999999996 32 234455544431 2222221111 00000000 0 015679999999
Q ss_pred CCC--CHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 165 DSM--TEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 165 d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
... +....+.++.+|.........++++|.+.
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 985 45567888888887665555588888654
No 247
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=98.97 E-value=1.9e-08 Score=73.84 Aligned_cols=87 Identities=46% Similarity=0.713 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHH
Q 016800 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQ 359 (382)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ 359 (382)
.++..+.++++.+.++++.+++..+++++..|+++.+++..+.+.+... .++...+.+++..++++++++..|.++.++
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~-~~~~~~k~~i~~~la~~e~rl~~G~~e~lQ 81 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASDILKQLHEVLVES-DIPDSQKAEILKILAEIEYRLSDGASEILQ 81 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTS-TSSHHHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHhHHHHCCCCHHHH
Confidence 4578889999999999999999999999999999999999999999886 788999999999999999999999999999
Q ss_pred HHHHHHHH
Q 016800 360 LLDVASNV 367 (382)
Q Consensus 360 l~~l~~~l 367 (382)
+++|++++
T Consensus 82 l~alva~~ 89 (89)
T PF08542_consen 82 LEALVAAF 89 (89)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999875
No 248
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.95 E-value=2.7e-07 Score=82.08 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=134.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
..|+.+++....++.+....+.- -.. .+||.|.+||||..+|++....- +. .+.+|+-+||... +.+.....+
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S--~R-~~~pFlalNCA~l-Pe~~aEsEl- 275 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLAS--PR-HSKPFLALNCASL-PEDAAESEL- 275 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcC--cc-cCCCeeEeecCCC-chhHhHHHH-
Confidence 46788888766666555444332 121 39999999999999999876542 22 2467888999864 333333222
Q ss_pred HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------c
Q 016800 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------R 197 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~ 197 (382)
+....+.....+-++.+....|++||+..|++..|..|++++.+.. -++++|++|..+- +
T Consensus 276 --FG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~ 353 (511)
T COG3283 276 --FGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGK 353 (511)
T ss_pred --hcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCc
Confidence 2222222223333445566799999999999999999999997542 4567777774331 2
Q ss_pred cchhhhcccceE--EecCCCH------HHHHHHHHHHHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-
Q 016800 198 IIEPLASRCAKF--RFKPLSE------EVMSSRVLHICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF- 264 (382)
Q Consensus 198 l~~~l~sr~~~i--~~~~~~~------~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~- 264 (382)
.-..+--|..++ +++|+.+ .-..-++.+.+.+.|+ .++++.+..+.++- .||+|.+.|.+-.++...
T Consensus 354 fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 354 FREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred hHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhc
Confidence 233444455544 4444432 2234566677777776 46788888887764 899999999887776554
Q ss_pred CCCCChhhHh
Q 016800 265 GSSITSKDLI 274 (382)
Q Consensus 265 ~~~It~~~v~ 274 (382)
+..++.+++.
T Consensus 434 g~~l~i~~i~ 443 (511)
T COG3283 434 GYELRIEDIL 443 (511)
T ss_pred cCccchhhcc
Confidence 5566655543
No 249
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.92 E-value=6.3e-08 Score=92.73 Aligned_cols=154 Identities=25% Similarity=0.274 Sum_probs=93.8
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC-------------C
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-------------D 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-------------~ 124 (382)
..|.++.|+..+++.+.-.+..+ .+++|.||+|+|||++++.+...+-.. .....++...-. .
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~--~g~e~le~~~i~s~~g~~~~~~~~~~ 263 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDL--SNEEALESAAILSLVNAESVQKQWRQ 263 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCC--CCcEEEecchhhhhhccccccCCcCC
Confidence 37888999998888776444433 369999999999999999998765211 111111111100 0
Q ss_pred cchHHHHHHHHHHHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCceEEE
Q 016800 125 RGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFF 189 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~I 189 (382)
++............. .+++ ...+.+......++++||++.++...++.|++.||+. +..+.+|
T Consensus 264 rPfr~ph~~~s~~~l--~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lI 341 (506)
T PRK09862 264 RPFRSPHHSASLTAM--VGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLV 341 (506)
T ss_pred CCccCCCccchHHHH--hCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEE
Confidence 000000000000000 1111 1122233446679999999999999999999999854 3456677
Q ss_pred EeecCcc---------------------ccchhhhcccc-eEEecCCCHH
Q 016800 190 FICNYIS---------------------RIIEPLASRCA-KFRFKPLSEE 217 (382)
Q Consensus 190 l~~~~~~---------------------~l~~~l~sr~~-~i~~~~~~~~ 217 (382)
.++|+.. ++..++.+|+. .+.+++++.+
T Consensus 342 Aa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 342 AAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 7777532 46678999998 5788877543
No 250
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.92 E-value=8.7e-08 Score=88.60 Aligned_cols=282 Identities=17% Similarity=0.183 Sum_probs=162.4
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCC-----------C-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-----------C-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~-----------~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~ 115 (382)
..++.++..-.--.++.||+++++.|.-++-.|. . -|+++.|.||+.|+.+.+.+.+.. | .
T Consensus 329 ~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rla--p-----R 401 (721)
T KOG0482|consen 329 EGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLA--P-----R 401 (721)
T ss_pred cccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcC--c-----c
Confidence 4455666655444589999999999987774431 1 149999999999999999998864 1 1
Q ss_pred eEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------
Q 016800 116 VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG-YPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------- 183 (382)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------- 183 (382)
-++..+...+++.--...++.-.. +...-.++ ...++..|..|||+|+|.....-++.+.||.-.
T Consensus 402 gvYTTGrGSSGVGLTAAVmkDpvT---gEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~Tt 478 (721)
T KOG0482|consen 402 GVYTTGRGSSGVGLTAAVMKDPVT---GEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTT 478 (721)
T ss_pred cceecCCCCCccccchhhhcCCCC---CeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccc
Confidence 122223222332211111111000 00000011 112356799999999999988899999998532
Q ss_pred --CceEEEEeecCcc-------------ccchhhhcccceE-------------------------------EecCCCHH
Q 016800 184 --KVTRFFFICNYIS-------------RIIEPLASRCAKF-------------------------------RFKPLSEE 217 (382)
Q Consensus 184 --~~~~~Il~~~~~~-------------~l~~~l~sr~~~i-------------------------------~~~~~~~~ 217 (382)
..+.++.++|+.. .++.++.||+..+ .|.|++.+
T Consensus 479 LNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~ 558 (721)
T KOG0482|consen 479 LNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPN 558 (721)
T ss_pred hhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHH
Confidence 2333444444321 2678888887632 67788888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHh--------------cCCCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCC
Q 016800 218 VMSSRVLHICNEEGLNLDAEALSTLSSI--------------SQGDLRRAITYLQGAARLF----GSSITSKDLISVSGV 279 (382)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------------s~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~ 279 (382)
-++.++.. |+.....++++..++|... +.-.+|.++.++......+ +..+..++|.+++..
T Consensus 559 ~mR~yI~~-ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRL 637 (721)
T KOG0482|consen 559 LMRRYISL-AKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRL 637 (721)
T ss_pred HHHHHHHH-HhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 88888753 5555666777777776542 1356888887776443333 456677777776531
Q ss_pred CCHHHHHHHHHH----HhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 016800 280 IPPEVVEGLFAV----CRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343 (382)
Q Consensus 280 ~~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (382)
...... .+... -.....+..+..+++|.. .|..+..+.....+...+ .|++..+...++.-
T Consensus 638 me~sK~-sL~~~~~~~~~~~~~~~if~iirel~~e~g~~~v~~s~~~~r~~~k--Gfs~~ql~~~i~ey 703 (721)
T KOG0482|consen 638 MEMSKD-SLYQDDGQKEDTSATDAIFAIIRELAGEGGKRCVKLSNAEQRCVRK--GFSEAQLKKCIDEY 703 (721)
T ss_pred HHhhhc-ccccccccccccchHHHHHHHHHHHHhhcCCceeeHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 110000 00000 000124566777788876 444444444444333333 68887766655443
No 251
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.5e-08 Score=89.65 Aligned_cols=170 Identities=21% Similarity=0.246 Sum_probs=106.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEE
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v 158 (382)
.|+|+.||+|+|||.+|+.+|+.+ +.++.-.++.... --+++...|..+...+... .+.....|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n------VekAQqGI 294 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN------VEKAQQGI 294 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh------CCCeEEecccchhhcccccccHHHHHHHHHHHccCC------HHHHhcCe
Confidence 469999999999999999999988 4455555554211 0123333344433322111 11225679
Q ss_pred EEEeCCCCCC--------------HHHHHHHHHHHHhc-------------C------CceEEEEeec------------
Q 016800 159 IILDEADSMT--------------EDAQNALRRTMETY-------------S------KVTRFFFICN------------ 193 (382)
Q Consensus 159 liiDe~d~l~--------------~~~~~~Ll~~le~~-------------~------~~~~~Il~~~------------ 193 (382)
|+|||+|++. ...|++|++++|.. . +.+-|+|++.
T Consensus 295 VflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r 374 (564)
T KOG0745|consen 295 VFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR 374 (564)
T ss_pred EEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH
Confidence 9999999986 34689999999821 1 1122333320
Q ss_pred -----------C-------------c----------------------cccchhhhcccc-eEEecCCCHHHHHHHHHHH
Q 016800 194 -----------Y-------------I----------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHI 226 (382)
Q Consensus 194 -----------~-------------~----------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~ 226 (382)
+ . ..+.|.+.-|+. .+.|..++.+++..+|..-
T Consensus 375 R~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEP 454 (564)
T KOG0745|consen 375 RLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEP 454 (564)
T ss_pred hhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcc
Confidence 0 0 014567777887 6799999999999888651
Q ss_pred -----------HHHhCC--CCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHhc
Q 016800 227 -----------CNEEGL--NLDAEALSTLSSIS---QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 227 -----------~~~~~~--~~~~~~~~~l~~~s---~gdlr~a~~~l~~~~~~~ 264 (382)
+...++ .+++++++.|++.+ +--.|-+..+++++-..+
T Consensus 455 knaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Llea 508 (564)
T KOG0745|consen 455 KNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEA 508 (564)
T ss_pred hhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhh
Confidence 111232 47899999999876 223566666676665544
No 252
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.1e-09 Score=101.28 Aligned_cols=121 Identities=29% Similarity=0.368 Sum_probs=73.5
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee------cCCCcchHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN------ASDDRGINVVR 131 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~------~~~~~~~~~~~ 131 (382)
..|.|++||+..++.+.-....+. |++|+||||||||.+|..+...+ |.......++.. +....+...+.
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~lL--Ppls~~E~lE~s~I~s~~g~~~~~~~~~~ 251 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPGLL--PPLSIPEALEVSAIHSLAGDLHEGCPLKI 251 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcccC--CCCChHHHHHHHHHhhhcccccccCccce
Confidence 389999999999999986666654 69999999999999999887765 211111111111 10000000000
Q ss_pred --------HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 132 --------TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 132 --------~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
+..........+....++.+..+...|+++||+..+..+..+.|+.-||+.
T Consensus 252 ~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g 310 (490)
T COG0606 252 HRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENG 310 (490)
T ss_pred eCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccC
Confidence 000000000001111233344457789999999999999999999999864
No 253
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.89 E-value=7.6e-08 Score=87.90 Aligned_cols=164 Identities=15% Similarity=0.065 Sum_probs=103.5
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc------------
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG------------ 126 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~------------ 126 (382)
.|..++|++.....|.-..-......+||.|+.|+||||++++++..|-.-..... ..+++.-...
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~g--c~f~cdP~~P~~~c~~c~~k~~ 92 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIG--CPFNCDPDDPEEMCDECRAKGD 92 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecC--CCCCCCCCChhhhhHHHHhhcc
Confidence 56789999999988876666666667999999999999999999998721110000 0011100000
Q ss_pred ----------------------hH------HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHH
Q 016800 127 ----------------------IN------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRT 178 (382)
Q Consensus 127 ----------------------~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~ 178 (382)
.+ ++...++. ......++....+++.|++|||+..+....++.|+..
T Consensus 93 e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~-----g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~ 167 (423)
T COG1239 93 ELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEE-----GPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDV 167 (423)
T ss_pred ccccccccceecceecCCCccchhhhccccCHHHHHhc-----CccccCCcchhhccCCEEEEeccccccHHHHHHHHHH
Confidence 00 00011110 0000123334456888999999999999999999999
Q ss_pred HHhc-------------CCceEEEEeecCc-cccchhhhcccc-eEEecCCCH-HHHHHHHHHHHHH
Q 016800 179 METY-------------SKVTRFFFICNYI-SRIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICNE 229 (382)
Q Consensus 179 le~~-------------~~~~~~Il~~~~~-~~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~~ 229 (382)
+++. +..+.+|.+.|+. ..|.+.|+.|+. .+...++.. ++...++.+...-
T Consensus 168 aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 168 AAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred HHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 9863 2344455555654 468899999976 676666654 5566666655543
No 254
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.2e-08 Score=102.18 Aligned_cols=123 Identities=26% Similarity=0.431 Sum_probs=86.5
Q ss_pred CcccCcHHHHHHHHHHHHcCC-----C-Cc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH----
Q 016800 61 KDVAHQEEVVRVLTNTLETAN-----C-PH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN---- 128 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-----~-~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~---- 128 (382)
+.++||++++..+...+...+ . |. ++|.||+|+|||-+|++++..+++.. ..++.++.+....+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse---~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE---ENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc---cceEEechhhhhhhhhccC
Confidence 467899999999988886432 1 22 89999999999999999999997653 456666665421100
Q ss_pred -----HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEee
Q 016800 129 -----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (382)
Q Consensus 129 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~ 192 (382)
.-.+....+... ....++.||++||++...++.++.|++++++.. .+++||+|+
T Consensus 639 sp~gyvG~e~gg~Ltea----------vrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEA----------VKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred CCcccccchhHHHHHHH----------HhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEec
Confidence 000111111111 112378899999999999999999999999653 578899998
Q ss_pred cCcc
Q 016800 193 NYIS 196 (382)
Q Consensus 193 ~~~~ 196 (382)
|...
T Consensus 709 n~~~ 712 (898)
T KOG1051|consen 709 NVGS 712 (898)
T ss_pred ccch
Confidence 7643
No 255
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.4e-08 Score=94.32 Aligned_cols=154 Identities=25% Similarity=0.290 Sum_probs=98.0
Q ss_pred CCCc---EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC------CcchHHHHHHHHHHHHhhhcCCCCCCCC
Q 016800 81 NCPH---MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD------DRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (382)
Q Consensus 81 ~~~~---lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (382)
.++| +|+|||||||||.+|+.+.+-++.... ++ +|++. ..+...+|..+..........+
T Consensus 252 Gi~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP---KI--VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g------ 320 (744)
T KOG0741|consen 252 GIKHVKGILLYGPPGTGKTLIARQIGKMLNAREP---KI--VNGPEILNKYVGESEENVRKLFADAEEEQRRLG------ 320 (744)
T ss_pred CccceeeEEEECCCCCChhHHHHHHHHHhcCCCC---cc--cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhC------
Confidence 4456 899999999999999999999875432 11 34432 1233456665554332211111
Q ss_pred CCCCcEEEEEeCCCCCC-------------HHHHHHHHHHHHh--cCCceEEEEeecCccccchhhhcc--cc-eEEecC
Q 016800 152 PCPPYKIIILDEADSMT-------------EDAQNALRRTMET--YSKVTRFFFICNYISRIIEPLASR--CA-KFRFKP 213 (382)
Q Consensus 152 ~~~~~~vliiDe~d~l~-------------~~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~sr--~~-~i~~~~ 213 (382)
..++-.|||+||+|.+. ....|.|+.-|+. .-.+..+|-.||..+.+++++.+- +. .++..-
T Consensus 321 ~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsL 400 (744)
T KOG0741|consen 321 ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISL 400 (744)
T ss_pred ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeC
Confidence 01266799999999773 3457888887763 335677888899999999999874 43 577777
Q ss_pred CCHHHHHHHHHH---HHHHhCCCCCHH-HHHHHHHhc
Q 016800 214 LSEEVMSSRVLH---ICNEEGLNLDAE-ALSTLSSIS 246 (382)
Q Consensus 214 ~~~~~~~~~l~~---~~~~~~~~~~~~-~~~~l~~~s 246 (382)
|++.-..++++- +.+..+. ++++ .++.|+..+
T Consensus 401 PDE~gRlQIl~IHT~rMre~~~-l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 401 PDEKGRLQILKIHTKRMRENNK-LSADVDLKELAALT 436 (744)
T ss_pred CCccCceEEEEhhhhhhhhcCC-CCCCcCHHHHHHHh
Confidence 877655555433 3333333 3333 366677655
No 256
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.5e-08 Score=87.80 Aligned_cols=92 Identities=21% Similarity=0.325 Sum_probs=67.7
Q ss_pred CcEEEEEeCCCCCC------------HHHHHHHHHHHHhcC----------CceEEEEee----cCccccchhhhcccc-
Q 016800 155 PYKIIILDEADSMT------------EDAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA- 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~------------~~~~~~Ll~~le~~~----------~~~~~Il~~----~~~~~l~~~l~sr~~- 207 (382)
...+|+|||+|++. ...|.-|+.++|... ++..||..+ ..|+.+.|.|.-|+.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 45699999999873 234677899888432 233344433 567889999999998
Q ss_pred eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc
Q 016800 208 KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS 246 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s 246 (382)
.+++.+++.+++..+|.. ..+.+|+ .+++++++.|++.+
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 899999999999988754 2334555 47899999988765
No 257
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.87 E-value=1.2e-08 Score=81.65 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=75.1
Q ss_pred CcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhh
Q 016800 65 HQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 142 (382)
|....++.+.+.++.- ...+++|+|++||||+++|+.+...-.. ....++.+++... . .+.+.. .
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~---~~~~~~~~~~~~~-~----~~~l~~----a- 68 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR---ANGPFIVIDCASL-P----AELLEQ----A- 68 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---CCS-CCCCCHHCT-C----HHHHHH----C-
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---cCCCeEEechhhC-c----HHHHHH----c-
Confidence 4545555555544432 2224999999999999999999886422 1223333344332 1 112222 1
Q ss_pred cCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCceEEEEeecCcc-------ccchhhhcccc--eEEec
Q 016800 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYIS-------RIIEPLASRCA--KFRFK 212 (382)
Q Consensus 143 ~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~-------~l~~~l~sr~~--~i~~~ 212 (382)
....++|+|+|.++.+.|..|...++.. ..++++|+++...- .+.+.+-.++. .+.++
T Consensus 69 ------------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lP 136 (138)
T PF14532_consen 69 ------------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLP 136 (138)
T ss_dssp ------------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE-
T ss_pred ------------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCC
Confidence 3348999999999999999999999864 56778998886432 24455555554 55555
Q ss_pred C
Q 016800 213 P 213 (382)
Q Consensus 213 ~ 213 (382)
|
T Consensus 137 p 137 (138)
T PF14532_consen 137 P 137 (138)
T ss_dssp -
T ss_pred C
Confidence 4
No 258
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.87 E-value=5.4e-08 Score=77.75 Aligned_cols=95 Identities=29% Similarity=0.326 Sum_probs=57.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc--------------------hHHHHHHHHHHHHhhh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--------------------INVVRTKIKTFAAVAV 142 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~~~~~~ 142 (382)
.+++|+||+|+|||++++.++..+.... ..++.+++..... ....+. +......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRL-ALALARK-- 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHH-HHHHHHh--
Confidence 4699999999999999999999985442 2345554432111 111111 1111111
Q ss_pred cCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHH--------HHHhcCCceEEEEeecC
Q 016800 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRR--------TMETYSKVTRFFFICNY 194 (382)
Q Consensus 143 ~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~--------~le~~~~~~~~Il~~~~ 194 (382)
. ...++++||++.+.......... ..........+|+++|.
T Consensus 77 -~----------~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 -L----------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred -c----------CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 0 24799999999997665554332 23344556677888875
No 259
>PRK06921 hypothetical protein; Provisional
Probab=98.84 E-value=3e-08 Score=88.02 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=60.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
..+++|+||+|+|||+++.++++++.... ...++.+...+. ...+......+....... ....+|||
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~~~l--~~~l~~~~~~~~~~~~~~---------~~~dlLiI 183 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPFVEG--FGDLKDDFDLLEAKLNRM---------KKVEVLFI 183 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEHHHH--HHHHHHHHHHHHHHHHHh---------cCCCEEEE
Confidence 34599999999999999999999985431 234455544321 122222111111100000 14579999
Q ss_pred eCCCC-------CCHHHHHHHHHHHHhcCC-ceEEEEeecCc
Q 016800 162 DEADS-------MTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (382)
Q Consensus 162 De~d~-------l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~ 195 (382)
||++. .+.-....|+.+++.... ...+|+++|..
T Consensus 184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 184 DDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred eccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 99943 445556788888887643 34578888754
No 260
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=98.82 E-value=5e-08 Score=78.54 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=91.9
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.+++|....+.++++++++..+|..+++..++++...|.++..++..+..+++..
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 6889999999999999999999999999999999999999999999999999998887752
Q ss_pred --------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHccCCCcc
Q 016800 329 --------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378 (382)
Q Consensus 329 --------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~~~~~~ 378 (382)
..++.+.+..+++.+.++...++...++++.+|.++++++..-.-.+...
T Consensus 81 ~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~~~~~~~~~ 138 (143)
T PF12169_consen 81 EEKLKELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQLKSLPSPDE 138 (143)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhcccccc
Confidence 34778889999999999999999999999999999999998655444443
No 261
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.80 E-value=4.7e-08 Score=89.08 Aligned_cols=131 Identities=22% Similarity=0.305 Sum_probs=77.4
Q ss_pred HHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH-HHH---HH--Hh
Q 016800 69 VVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-IKT---FA--AV 140 (382)
Q Consensus 69 ~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~---~~--~~ 140 (382)
++.....++.+ ....+++|+||+|+|||+++.++++++...+ ..++.++..+. ...+... ... .. ..
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~l--~~~l~~~~~~~~~~~~~~~~ 242 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADEL--IEILREIRFNNDKELEEVYD 242 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHHH--HHHHHHHHhccchhHHHHHH
Confidence 33444445542 1225699999999999999999999986543 34555555332 1111110 000 00 00
Q ss_pred hhcCCCCCCCCCCCCcEEEEEeCCCCC--CHHHHHHHHHHHHhcCC-ceEEEEeecCcc-c----cchhhhccc----ce
Q 016800 141 AVGSGQRRGGYPCPPYKIIILDEADSM--TEDAQNALRRTMETYSK-VTRFFFICNYIS-R----IIEPLASRC----AK 208 (382)
Q Consensus 141 ~~~~~~~~~~~~~~~~~vliiDe~d~l--~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~-~----l~~~l~sr~----~~ 208 (382)
.. ....+|||||++.. +...+..|+.+++.... ...+|++||... . +.+.+.||. .+
T Consensus 243 ~l-----------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~ 311 (329)
T PRK06835 243 LL-----------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTL 311 (329)
T ss_pred Hh-----------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEE
Confidence 00 14569999999655 56678889999987643 345788887542 2 334566664 35
Q ss_pred EEecCCC
Q 016800 209 FRFKPLS 215 (382)
Q Consensus 209 i~~~~~~ 215 (382)
+.|...+
T Consensus 312 i~~~G~d 318 (329)
T PRK06835 312 LKFYGED 318 (329)
T ss_pred EEecCcC
Confidence 6665433
No 262
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.80 E-value=1.2e-08 Score=92.18 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=73.9
Q ss_pred cCCchhhhhcCCCCCCcccC----cHHHHHHHHHHHHcC----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 46 QSSQPWVEKYRPKQVKDVAH----QEEVVRVLTNTLETA----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g----~~~~~~~l~~~l~~~----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
.+..|. .+...+|+++.. +..+......++... ...+++|+||+|+|||+++.++++++...+ ..+.
T Consensus 114 ~a~~p~--~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~ 188 (306)
T PRK08939 114 SIYMPK--DLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKG---VSST 188 (306)
T ss_pred HcCCCH--hHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEE
Confidence 455553 344556666653 334444455566532 233599999999999999999999985332 2333
Q ss_pred EeecCCCcchHHHHHHHH-----HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC--CHHHHHHHH-HHHHhc-CCceEE
Q 016800 118 ELNASDDRGINVVRTKIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSM--TEDAQNALR-RTMETY-SKVTRF 188 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l--~~~~~~~Ll-~~le~~-~~~~~~ 188 (382)
.+..++ ....+..... ..... . .+..++||||+... +.-....++ .+++.. ......
T Consensus 189 ~~~~~~--l~~~lk~~~~~~~~~~~l~~-l-----------~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~t 254 (306)
T PRK08939 189 LLHFPE--FIRELKNSISDGSVKEKIDA-V-----------KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPT 254 (306)
T ss_pred EEEHHH--HHHHHHHHHhcCcHHHHHHH-h-----------cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeE
Confidence 333322 1111111110 00000 0 15579999999765 444443444 455654 355668
Q ss_pred EEeecCc
Q 016800 189 FFICNYI 195 (382)
Q Consensus 189 Il~~~~~ 195 (382)
|++||..
T Consensus 255 i~TSNl~ 261 (306)
T PRK08939 255 FFTSNFD 261 (306)
T ss_pred EEECCCC
Confidence 8888854
No 263
>PF05729 NACHT: NACHT domain
Probab=98.77 E-value=6.6e-08 Score=79.80 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=80.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCC---CceEEeecCCCcch---HHHHHHHHHHHHhhhcCCCC--CCCCCCCCc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYK---SRVLELNASDDRGI---NVVRTKIKTFAAVAVGSGQR--RGGYPCPPY 156 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~---~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~ 156 (382)
++++|++|+|||+++..++..+....... ..++.+...+.... ..+.+.+............. .......+.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999998885544322 12223333221111 12222222111000000000 000012256
Q ss_pred EEEEEeCCCCCCHHHH--------HHHHHHHHh-cCCceEEEEeecCccc-cchhhhcccceEEecCCCHHHHHHHHHHH
Q 016800 157 KIIILDEADSMTEDAQ--------NALRRTMET-YSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHI 226 (382)
Q Consensus 157 ~vliiDe~d~l~~~~~--------~~Ll~~le~-~~~~~~~Il~~~~~~~-l~~~l~sr~~~i~~~~~~~~~~~~~l~~~ 226 (382)
-++|||.+|.+..... +.|..++.. .+.++.+++++.+... -..........+.+.+++.+++.+++.+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 7899999999876332 345556665 3556778887764332 12222223357899999999999999876
Q ss_pred HH
Q 016800 227 CN 228 (382)
Q Consensus 227 ~~ 228 (382)
++
T Consensus 163 f~ 164 (166)
T PF05729_consen 163 FS 164 (166)
T ss_pred hh
Confidence 64
No 264
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.76 E-value=3.5e-06 Score=88.78 Aligned_cols=188 Identities=15% Similarity=0.165 Sum_probs=115.8
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
|..-.+++-++...+.+... ...+-.+++||+|+||||++..++.... ....+.++..+......+...+..
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~~-----~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGKN-----NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhCC-----CeEEEecCcccCCHHHHHHHHHHH
Confidence 45556888888887776532 2334589999999999999999886431 122233343443222233333322
Q ss_pred HHHhhhcC-CC------CC--C-----------CC-CCCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCceEEEEeecC
Q 016800 137 FAAVAVGS-GQ------RR--G-----------GY-PCPPYKIIILDEADSMTEDA-QNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 137 ~~~~~~~~-~~------~~--~-----------~~-~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
+....... .. .. . .. ..+.+-+|||||+|.+.... .+.+..++...+++..+|+++..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 21110000 00 00 0 00 11356799999999997554 45777778877888888887754
Q ss_pred cccc-chhhhcccceEEec----CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHH
Q 016800 195 ISRI-IEPLASRCAKFRFK----PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (382)
Q Consensus 195 ~~~l-~~~l~sr~~~i~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~ 255 (382)
...+ ...++-+...+.+. +++.+|...++... .|..++++.+..+.+.++|++--+.-
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~~l~l 224 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWATALQL 224 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHHHHHH
Confidence 2222 22333333344444 88999999998543 36778999999999999999976543
No 265
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.75 E-value=6.4e-07 Score=87.74 Aligned_cols=202 Identities=15% Similarity=0.134 Sum_probs=125.6
Q ss_pred cHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC--CC--cchHHHHHHHHHHHHh
Q 016800 66 QEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS--DD--RGINVVRTKIKTFAAV 140 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~ 140 (382)
|++.+..+.-..-+. ....++|.|+.|+||+++++.+...+-. ...+..+... +. .+--++...+..
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~---- 79 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA----GTPLRRLPPGIADDRLLGGLDLAATLRA---- 79 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC----CCCcccCCCCCcHHHccCCchHHhHhhc----
Confidence 556665555444444 5556999999999999999999988722 1233333222 11 111112222211
Q ss_pred hhcCC-CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-----------ceEEEEeecC-----ccccchhhh
Q 016800 141 AVGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-----------VTRFFFICNY-----ISRIIEPLA 203 (382)
Q Consensus 141 ~~~~~-~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~-----------~~~~Il~~~~-----~~~l~~~l~ 203 (382)
+.. ...+.+......|+++||+..+++..++.|+..|++..- ...|++++.. ...+.+++.
T Consensus 80 --g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lL 157 (584)
T PRK13406 80 --GRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALA 157 (584)
T ss_pred --CCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhH
Confidence 111 123333444678999999999999999999999996521 1235454422 234888999
Q ss_pred cccc-eEEecCCCHHHHH-------HHHHHHHHHhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHhc----CCC
Q 016800 204 SRCA-KFRFKPLSEEVMS-------SRVLHICNEEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF----GSS 267 (382)
Q Consensus 204 sr~~-~i~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~l~~~s---~g-dlr~a~~~l~~~~~~~----~~~ 267 (382)
.|+. .+.+..++..+.. .+...+..-.++.++++.+.+++..+ +- .+|..+.++..+...+ ...
T Consensus 158 DRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~ 237 (584)
T PRK13406 158 DRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTA 237 (584)
T ss_pred hheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 9998 7888887765442 12221211236789999988877654 31 5677777766554443 467
Q ss_pred CChhhHhhhh
Q 016800 268 ITSKDLISVS 277 (382)
Q Consensus 268 It~~~v~~~~ 277 (382)
|+.++|.+++
T Consensus 238 V~~~dv~~Aa 247 (584)
T PRK13406 238 VEEEDLALAA 247 (584)
T ss_pred CCHHHHHHHH
Confidence 9999998876
No 266
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.69 E-value=5.9e-06 Score=71.56 Aligned_cols=138 Identities=20% Similarity=0.242 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC
Q 016800 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (382)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (382)
...+...+.... .-.++||+|||||++++.+++.+ ...++.+|+.+......+...+.......
T Consensus 22 ~~~l~~al~~~~--~~~~~GpagtGKtetik~La~~l------G~~~~vfnc~~~~~~~~l~ril~G~~~~G-------- 85 (231)
T PF12774_consen 22 FLTLTQALSLNL--GGALSGPAGTGKTETIKDLARAL------GRFVVVFNCSEQMDYQSLSRILKGLAQSG-------- 85 (231)
T ss_dssp HHHHHHHHCTTT--EEEEESSTTSSHHHHHHHHHHCT------T--EEEEETTSSS-HHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHhccCC--CCCCcCCCCCCchhHHHHHHHHh------CCeEEEecccccccHHHHHHHHHHHhhcC--------
Confidence 344444454332 25789999999999999999988 46678899998888888887777766542
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH-------hcC-------------CceEEEEeecC----ccccchhhhcc
Q 016800 150 GYPCPPYKIIILDEADSMTEDAQNALRRTME-------TYS-------------KVTRFFFICNY----ISRIIEPLASR 205 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le-------~~~-------------~~~~~Il~~~~----~~~l~~~l~sr 205 (382)
-.+.+||+++++.+....+-..+. ... +++.+.++.|+ ...+++.+++-
T Consensus 86 -------aW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~l 158 (231)
T PF12774_consen 86 -------AWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKAL 158 (231)
T ss_dssp --------EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTT
T ss_pred -------chhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHH
Confidence 389999999999876554443332 111 23445555553 34688999999
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhCCC
Q 016800 206 CAKFRFKPLSEEVMSSRVLHICNEEGLN 233 (382)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 233 (382)
+..+.+..|+...+.+++ +-..|..
T Consensus 159 FRpvam~~PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 159 FRPVAMMVPDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp EEEEE--S--HHHHHHHH---HHCCCTS
T ss_pred hheeEEeCCCHHHHHHHH---HHHcCch
Confidence 999999999988877776 4455653
No 267
>PRK04132 replication factor C small subunit; Provisional
Probab=98.68 E-value=1.3e-08 Score=102.45 Aligned_cols=52 Identities=48% Similarity=0.967 Sum_probs=48.6
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHH
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~l 98 (382)
...||.+||||++|+|++||+++++.|..++..++.||++|+||||+||+..
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 3569999999999999999999999999999999999999999999999643
No 268
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.66 E-value=5.6e-07 Score=88.35 Aligned_cols=137 Identities=23% Similarity=0.282 Sum_probs=85.6
Q ss_pred CCcccCcHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc--
Q 016800 60 VKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-- 125 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~------------~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-- 125 (382)
...+.|++.+++.+.-.+-.|.. -|+|+.|.||+|||.+.+.+.+.+ ..-++.++....
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a-------Pr~vytsgkgss~~ 357 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA-------PRGVYTSGKGSSAA 357 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC-------CceEEEcccccccc
Confidence 34778999999888766644311 259999999999999999998875 222223322111
Q ss_pred chH--HHHHHH-HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------CceEEE
Q 016800 126 GIN--VVRTKI-KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFF 189 (382)
Q Consensus 126 ~~~--~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~I 189 (382)
+.. .+++.. ..+. ... +....+...|+.|||+|+|+.....+|...||... ..+.++
T Consensus 358 GLTAav~rd~~tge~~---Lea----GALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvL 430 (682)
T COG1241 358 GLTAAVVRDKVTGEWV---LEA----GALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVL 430 (682)
T ss_pred CceeEEEEccCCCeEE---EeC----CEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhh
Confidence 110 011111 0000 000 01112266799999999999999999999999542 334455
Q ss_pred EeecCcc-------------ccchhhhcccceEE
Q 016800 190 FICNYIS-------------RIIEPLASRCAKFR 210 (382)
Q Consensus 190 l~~~~~~-------------~l~~~l~sr~~~i~ 210 (382)
.++|+.. .++++|.||+..+.
T Consensus 431 AAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLif 464 (682)
T COG1241 431 AAANPKFGRYDPKKTVAENINLPAPLLSRFDLIF 464 (682)
T ss_pred hhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeE
Confidence 5666543 26789999999543
No 269
>PHA00729 NTP-binding motif containing protein
Probab=98.66 E-value=1.2e-07 Score=80.85 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=70.0
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCC--CceEEeecCC---CcchHHHHHHHHHHHHhhhcCCCC
Q 016800 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK--SRVLELNASD---DRGINVVRTKIKTFAAVAVGSGQR 147 (382)
Q Consensus 73 l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~--~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 147 (382)
+.+.+..+...+++|+|+|||||||+|.++++.+.. .... .....++... ....+.+...+...... .
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~-~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~---~--- 80 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFW-KLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDN---D--- 80 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh-hcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhc---C---
Confidence 334445555557999999999999999999998631 0000 0000001100 01123333333322111 0
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHH
Q 016800 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~ 225 (382)
.+..++||||+..-...-. ..... + .....+.+.++||+..+.|.+++++++...|+.
T Consensus 81 ------~~~dlLIIDd~G~~~~~~~--------wh~~~----~--~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 81 ------YRIPLIIFDDAGIWLSKYV--------WYEDY----M--KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred ------CCCCEEEEeCCchhhcccc--------hhhhc----c--chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 0335899999643211100 00000 0 123456788999999999999999999998865
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.62 E-value=1.3e-06 Score=69.19 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=65.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC----------------CCCceEEeecCC-----------------CcchHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPEL----------------YKSRVLELNASD-----------------DRGINVVR 131 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~----------------~~~~~~~~~~~~-----------------~~~~~~~~ 131 (382)
++++|+||+||||++..++..+...++ ..+.++.+.... ....+...
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le 87 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLE 87 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHH
Confidence 899999999999999999988753321 111222222110 00112222
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---HHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccce
Q 016800 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208 (382)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 208 (382)
+........+.. ...++||||+..|- +....++-.+|....+ ....+--++.+-+...++++...
T Consensus 88 ~i~~~al~rA~~-----------~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp-liatlHrrsr~P~v~~ik~~~~v 155 (179)
T COG1618 88 EIAIPALRRALE-----------EADVIIIDEIGPMELKSKKFREAVEEVLKSGKP-LIATLHRRSRHPLVQRIKKLGGV 155 (179)
T ss_pred HHhHHHHHHHhh-----------cCCEEEEecccchhhccHHHHHHHHHHhcCCCc-EEEEEecccCChHHHHhhhcCCE
Confidence 111111111111 33699999999884 4444455555544332 22222224456677888888887
Q ss_pred EEe-cCCCHH
Q 016800 209 FRF-KPLSEE 217 (382)
Q Consensus 209 i~~-~~~~~~ 217 (382)
+-| .|-+.+
T Consensus 156 ~v~lt~~NR~ 165 (179)
T COG1618 156 YVFLTPENRN 165 (179)
T ss_pred EEEEccchhh
Confidence 664 444444
No 271
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.62 E-value=2.5e-06 Score=91.44 Aligned_cols=188 Identities=15% Similarity=0.076 Sum_probs=104.4
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-------------
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS------------- 122 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~------------- 122 (382)
..+++++|.+..++.+..++... ....+-|+|++|+||||+|++++..+.... .. . +.++..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F-~g-~-vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF-QS-S-VFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC-Ce-E-EEeeccccccchhhccccc
Confidence 46789999999999998887543 222389999999999999999988764321 11 1 111110
Q ss_pred -CCcc-hHHH-HHHHHHHHHhhhcCCCC---CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 123 -DDRG-INVV-RTKIKTFAAVAVGSGQR---RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 123 -~~~~-~~~~-~~~l~~~~~~~~~~~~~---~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
.... ...+ ...+............. ....-.+++-+||+|+++.. ...+.|....+......++|+||.+..
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 0000 0000 11111111000000000 00001125668999998753 445555544444345567888877543
Q ss_pred ccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHhcCCCHHH
Q 016800 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD--AEALSTLSSISQGDLRR 252 (382)
Q Consensus 197 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~s~gdlr~ 252 (382)
-+... .-..++.++.++.++..+++.+.+-+....-+ .+....+++.++|-|-.
T Consensus 336 vl~~~--~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 336 FLRAH--GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred HHHhc--CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 32110 01237889999999999888877654332211 23466788899997754
No 272
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.62 E-value=1.1e-07 Score=75.16 Aligned_cols=109 Identities=21% Similarity=0.303 Sum_probs=61.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCC--CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCC--------CCCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR--------GGYPC 153 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~ 153 (382)
+++++||+|+|||+++..+++.+..... ....++.++++.......+...+.............. .....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998732100 0244555555433222222222222111111000000 00001
Q ss_pred CCcEEEEEeCCCCC-CHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 154 PPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 154 ~~~~vliiDe~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.+..+|+|||+|.+ +.+..+.|..+.+ ...+.+|+++.+
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 13369999999999 8888888877776 556778888765
No 273
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.59 E-value=1.5e-06 Score=83.19 Aligned_cols=184 Identities=23% Similarity=0.235 Sum_probs=116.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC---CCCCCCCCCcEEEE
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ---RRGGYPCPPYKIII 160 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~vli 160 (382)
++++.|.+|+||-.+++++...-- ....++-+|+... +..-+.+.+-.+......+.. ..+.+.......++
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~----~~gpfvAvNCaAi-p~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSE----AAGPFVAVNCAAI-PEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhccc----ccCCeEEEEeccc-hHHhhhHHHhccCccccccchhccccccceecCCCccH
Confidence 399999999999999999987642 3457788888754 323333322222211111100 12223345667999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcC----------CceEEEEeecCcc-------ccchhhhcccc--eEEecCCCHH-HHH
Q 016800 161 LDEADSMTEDAQNALRRTMETYS----------KVTRFFFICNYIS-------RIIEPLASRCA--KFRFKPLSEE-VMS 220 (382)
Q Consensus 161 iDe~d~l~~~~~~~Ll~~le~~~----------~~~~~Il~~~~~~-------~l~~~l~sr~~--~i~~~~~~~~-~~~ 220 (382)
+||+..|+...|..|++.+++.. -.+++|.+|+..- ..-+.+--|.. ++.++|+.+. +..
T Consensus 413 ldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~ 492 (606)
T COG3284 413 LDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRI 492 (606)
T ss_pred HHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccH
Confidence 99999999999999999998652 1344555554321 12233333443 6677776542 333
Q ss_pred HHHHHHHHHh---CCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHhc-CCCCChhh
Q 016800 221 SRVLHICNEE---GLNLDAEALSTLSSI-SQGDLRRAITYLQGAARLF-GSSITSKD 272 (382)
Q Consensus 221 ~~l~~~~~~~---~~~~~~~~~~~l~~~-s~gdlr~a~~~l~~~~~~~-~~~It~~~ 272 (382)
..|.++.+++ ...++++++..|... -.||+|.+.+.++.++..+ ++.|...+
T Consensus 493 ~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~d 549 (606)
T COG3284 493 PLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSD 549 (606)
T ss_pred HHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEccc
Confidence 3344444433 467899998877664 5999999999999998877 44455443
No 274
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.57 E-value=7.8e-07 Score=85.33 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=86.4
Q ss_pred cccCcHHHHHHHHHHHHcC---------CC---CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH-
Q 016800 62 DVAHQEEVVRVLTNTLETA---------NC---PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN- 128 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~---------~~---~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~- 128 (382)
.+.|++.+++.+.-.+-.| +. -|+|++|.||+|||.+.+.+.+.+- .+ ++.++.......
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p-Rg------~yTSGkGsSavGL 502 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP-RG------VYTSGKGSSAVGL 502 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC-cc------eeecCCccchhcc
Confidence 6678888887766555332 11 2499999999999999999888762 11 112221110000
Q ss_pred --------HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCceE
Q 016800 129 --------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTR 187 (382)
Q Consensus 129 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~ 187 (382)
+-++.+.. .+-...++..+..|||+|+|+......|++.||.- ...+.
T Consensus 503 TayVtrd~dtkqlVLe-----------sGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~S 571 (804)
T KOG0478|consen 503 TAYVTKDPDTRQLVLE-----------SGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCS 571 (804)
T ss_pred eeeEEecCccceeeee-----------cCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence 00000000 00011126679999999999999999999999843 34566
Q ss_pred EEEeecCcc-------------ccchhhhcccce--EEecCCCHH
Q 016800 188 FFFICNYIS-------------RIIEPLASRCAK--FRFKPLSEE 217 (382)
Q Consensus 188 ~Il~~~~~~-------------~l~~~l~sr~~~--i~~~~~~~~ 217 (382)
++.++|+.. .++++|.||+.. +-++++++.
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 777777422 278999999994 456666654
No 275
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3e-06 Score=82.55 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=97.3
Q ss_pred CcHHHHHHHHHHHHcCC---------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc--chHHHHHH
Q 016800 65 HQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--GINVVRTK 133 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~---------~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 133 (382)
+++..+..+...+.-.. .+.+|++|+||+|||++++++++++ +..++++++.... ........
T Consensus 405 ~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l------g~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 405 GLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL------GLHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred cchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh------CCceEeccHHHHhhcccchhHHH
Confidence 45555555555554322 1238999999999999999999998 5677777764321 11111122
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHHH--h---cCCceEEEEeecCccccch
Q 016800 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTME--T---YSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------~~~~~~Ll~~le--~---~~~~~~~Il~~~~~~~l~~ 200 (382)
+..+....... ..-|+++-++|-+. ...+..+...+. . ..+.+.||.+++..+.+.+
T Consensus 479 l~~~f~~a~~~----------~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~ 548 (953)
T KOG0736|consen 479 LQAIFSRARRC----------SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPA 548 (953)
T ss_pred HHHHHHHHhhc----------CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCH
Confidence 22222221111 44577777776653 222334444443 1 2345667888888999999
Q ss_pred hhhcccc-eEEecCCCHHHHHHHHHHHHHHhC
Q 016800 201 PLASRCA-KFRFKPLSEEVMSSRVLHICNEEG 231 (382)
Q Consensus 201 ~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~ 231 (382)
.+++-+. .+.++.+++++..+||+.......
T Consensus 549 ~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 549 DIQSLFLHEIEVPALSEEQRLEILQWYLNHLP 580 (953)
T ss_pred HHHHhhhhhccCCCCCHHHHHHHHHHHHhccc
Confidence 9999876 899999999999999999887654
No 276
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.52 E-value=6.9e-06 Score=78.17 Aligned_cols=228 Identities=18% Similarity=0.242 Sum_probs=120.8
Q ss_pred cccCcHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC--cch
Q 016800 62 DVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD--RGI 127 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~------------~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~ 127 (382)
.+.|+..++..+.-.+-.|.. -|+||.|.|||||+.+.+..++... ..++ ..+... .+.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~------RAV~-tTGqGASavGL 522 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSP------RAVF-TTGQGASAVGL 522 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCc------ceeE-eccCCccccce
Confidence 566999999888877754411 1499999999999999998877541 1111 111110 000
Q ss_pred H--HHHHHHH-HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCceEEEEe
Q 016800 128 N--VVRTKIK-TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFFFI 191 (382)
Q Consensus 128 ~--~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~Il~ 191 (382)
. ..++-+. .+. ... +....+.+.|.+|||+|+|+......+.+.||.- ...+.+|.+
T Consensus 523 Ta~v~KdPvtrEWT---LEa----GALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAA 595 (854)
T KOG0477|consen 523 TAYVRKDPVTREWT---LEA----GALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAA 595 (854)
T ss_pred eEEEeeCCccceee---ecc----CeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhhee
Confidence 0 0000000 000 000 0011236779999999999987766777777643 245667787
Q ss_pred ecCcc-------------ccchhhhcccceE-----EecCCCHHHHHHHHHH-HHHHh-------CC----------CCC
Q 016800 192 CNYIS-------------RIIEPLASRCAKF-----RFKPLSEEVMSSRVLH-ICNEE-------GL----------NLD 235 (382)
Q Consensus 192 ~~~~~-------------~l~~~l~sr~~~i-----~~~~~~~~~~~~~l~~-~~~~~-------~~----------~~~ 235 (382)
+|+.. .+..+|.||+.++ .+.|...+.+.+++.. ..+.+ +. .++
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ip 675 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIP 675 (854)
T ss_pred cCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccCh
Confidence 77621 3678999999865 3455555555555432 22211 11 144
Q ss_pred HHHHHHHHHhc---------CCCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHH
Q 016800 236 AEALSTLSSIS---------QGDLRRAITYLQGAARLF----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANK 302 (382)
Q Consensus 236 ~~~~~~l~~~s---------~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (382)
.+.+...+.++ .+|..+.-.+...+-..+ +-.||..+++.++....-..--.+-+.+...|...|+.
T Consensus 676 q~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~ 755 (854)
T KOG0477|consen 676 QELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIR 755 (854)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHH
Confidence 55555544433 344444333333332222 35788888887764221111112333344445555554
Q ss_pred H
Q 016800 303 E 303 (382)
Q Consensus 303 ~ 303 (382)
.
T Consensus 756 v 756 (854)
T KOG0477|consen 756 V 756 (854)
T ss_pred H
Confidence 4
No 277
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.52 E-value=1e-06 Score=83.84 Aligned_cols=137 Identities=23% Similarity=0.266 Sum_probs=82.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec--CC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA--SD 123 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~--~~ 123 (382)
.-|..+.||+.++..+.-.+-.| .-.|+++.|.||+||+.+.++.+.-+ | .-++..+ +.
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs--P-----R~vYtsGkaSS 414 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS--P-----RSVYTSGKASS 414 (764)
T ss_pred hhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC--C-----cceEecCcccc
Confidence 34567789999997776555333 11369999999999999999887654 2 1122222 11
Q ss_pred CcchH--HHHHHH-HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCceE
Q 016800 124 DRGIN--VVRTKI-KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTR 187 (382)
Q Consensus 124 ~~~~~--~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~ 187 (382)
..+.. .+++.. ..|... . +-.-.++..|..|||+|+|+...+.+|++.||.- +..+.
T Consensus 415 aAGLTaaVvkD~esgdf~iE---A----GALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 415 AAGLTAAVVKDEESGDFTIE---A----GALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred cccceEEEEecCCCCceeee---c----CcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhh
Confidence 11110 000000 000000 0 0011126679999999999999999999999953 23455
Q ss_pred EEEeecCcc-------------ccchhhhcccce
Q 016800 188 FFFICNYIS-------------RIIEPLASRCAK 208 (382)
Q Consensus 188 ~Il~~~~~~-------------~l~~~l~sr~~~ 208 (382)
++.++|+.. ++..+|.||+..
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimSRFDL 521 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMSRFDL 521 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhhhhcE
Confidence 666666542 256788899873
No 278
>PF14516 AAA_35: AAA-like domain
Probab=98.51 E-value=0.00011 Score=67.71 Aligned_cols=198 Identities=14% Similarity=0.119 Sum_probs=112.6
Q ss_pred cCcHHHHHHHHHHHHc-CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC--C---cchHHHHHHH-HH
Q 016800 64 AHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD--D---RGINVVRTKI-KT 136 (382)
Q Consensus 64 ~g~~~~~~~l~~~l~~-~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~--~---~~~~~~~~~l-~~ 136 (382)
+.++.+-+.+.+.+.. |. .+.+.||..+|||++...+.+.+...+ ..++.++... . ...+.+-..+ ..
T Consensus 14 i~R~~~e~~~~~~i~~~G~--~~~I~apRq~GKTSll~~l~~~l~~~~---~~~v~id~~~~~~~~~~~~~~f~~~~~~~ 88 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQPGS--YIRIKAPRQMGKTSLLLRLLERLQQQG---YRCVYIDLQQLGSAIFSDLEQFLRWFCEE 88 (331)
T ss_pred cCchHHHHHHHHHHhcCCC--EEEEECcccCCHHHHHHHHHHHHHHCC---CEEEEEEeecCCCcccCCHHHHHHHHHHH
Confidence 3555566666666655 43 589999999999999999998885443 3344444332 1 1111111111 11
Q ss_pred HHHh-------------hhcCCCC----CCC---CCCCCcEEEEEeCCCCCCH--HHHHHHHHHH----Hhc-----CCc
Q 016800 137 FAAV-------------AVGSGQR----RGG---YPCPPYKIIILDEADSMTE--DAQNALRRTM----ETY-----SKV 185 (382)
Q Consensus 137 ~~~~-------------~~~~~~~----~~~---~~~~~~~vliiDe~d~l~~--~~~~~Ll~~l----e~~-----~~~ 185 (382)
+... ....... ... ....++-|++|||+|.+.. ...+.|+..+ +.. ...
T Consensus 89 i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~ 168 (331)
T PF14516_consen 89 ISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQK 168 (331)
T ss_pred HHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccce
Confidence 1100 0000000 000 0123667999999998864 3334444444 321 123
Q ss_pred eEEEEeecCccccchhh----hcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 186 TRFFFICNYISRIIEPL----ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l----~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
.++|++......+...+ .+-+..+.+++.+.+|+...+. +.+..++++.++.|...++|.|.-.-..+..++
T Consensus 169 L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~----~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 169 LRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQ----RYGLEFSQEQLEQLMDWTGGHPYLVQKACYLLV 244 (331)
T ss_pred EEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHH----hhhccCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45666553222221111 1345578999999999988764 456778888899999999999987666666555
Q ss_pred HhcCCCCChhhH
Q 016800 262 RLFGSSITSKDL 273 (382)
Q Consensus 262 ~~~~~~It~~~v 273 (382)
. ..++.+.+
T Consensus 245 ~---~~~~~~~l 253 (331)
T PF14516_consen 245 E---EQITLEQL 253 (331)
T ss_pred H---ccCcHHHH
Confidence 4 45555544
No 279
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.50 E-value=2.9e-05 Score=67.60 Aligned_cols=193 Identities=20% Similarity=0.248 Sum_probs=108.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCC-C-CCCCCCCCCcEEEEE
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG-Q-RRGGYPCPPYKIIIL 161 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~vlii 161 (382)
.+|+.||.|.||+.+|+.+...-...+-.+..++++||...++...+...+... .....+. . ..+.....+..++++
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv-kgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV-KGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh-ccccccchhhhhhhhccCCCceEeh
Confidence 499999999999999998876443333445689999998876654443322221 1111111 1 112233446679999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCC---------ceEEEEeecCc---------cccchhhhcccceEEecCCCH----HHH
Q 016800 162 DEADSMTEDAQNALRRTMETYSK---------VTRFFFICNYI---------SRIIEPLASRCAKFRFKPLSE----EVM 219 (382)
Q Consensus 162 De~d~l~~~~~~~Ll~~le~~~~---------~~~~Il~~~~~---------~~l~~~l~sr~~~i~~~~~~~----~~~ 219 (382)
||+..+..+.|..|++.+|+... ..-|-+++-.. ...-+.+--|.....|..|.- +++
T Consensus 289 deigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edi 368 (531)
T COG4650 289 DEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 (531)
T ss_pred HhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCcccc
Confidence 99999999999999999997531 01111111000 011223333444444444332 222
Q ss_pred HH----HHHHHHHHhC--CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHhc-CCCCChhhHhhhh
Q 016800 220 SS----RVLHICNEEG--LNLDAEALSTLSSIS-------QGDLRRAITYLQGAARLF-GSSITSKDLISVS 277 (382)
Q Consensus 220 ~~----~l~~~~~~~~--~~~~~~~~~~l~~~s-------~gdlr~a~~~l~~~~~~~-~~~It~~~v~~~~ 277 (382)
.. -|.+.+...| +.+..++-......+ .||.|.+-.-+...+..+ ++.||.+.|+.-+
T Consensus 369 epnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ei 440 (531)
T COG4650 369 EPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVEDEI 440 (531)
T ss_pred CCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHHHH
Confidence 21 2233333333 445555544433322 689998776666666555 6889988775433
No 280
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.47 E-value=2.8e-07 Score=77.58 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=33.1
Q ss_pred cccCcHHHHHHHHHHHH---cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 62 DVAHQEEVVRVLTNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---~~~~~~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.++|+++.++.+...+. .+..+.++++|++|+|||++++.+.+.+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999983 2233449999999999999999998887443
No 281
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.45 E-value=9.3e-07 Score=78.76 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=83.2
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC--CCC
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRG 149 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~ 149 (382)
-+..++..++ ++||.||+|+|||.+++.+.+.+... ...+..++.+.......+ ............ ..
T Consensus 25 ll~~l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~---~~~~~~~~~s~~Tts~~~----q~~ie~~l~k~~~~~~- 94 (272)
T PF12775_consen 25 LLDLLLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSD---KYLVITINFSAQTTSNQL----QKIIESKLEKRRGRVY- 94 (272)
T ss_dssp HHHHHHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTC---CEEEEEEES-TTHHHHHH----HHCCCTTECECTTEEE-
T ss_pred HHHHHHHcCC--cEEEECCCCCchhHHHHhhhccCCcc---ccceeEeeccCCCCHHHH----HHHHhhcEEcCCCCCC-
Confidence 3344455544 69999999999999999988765221 112333444332222222 222111111100 00
Q ss_pred CCCCCCcEEEEEeCCCCCCH------HHHHHHHHHHHhcC------------CceEEEEeecCcc---ccchhhhcccce
Q 016800 150 GYPCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYIS---RIIEPLASRCAK 208 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~------~~~~~Ll~~le~~~------------~~~~~Il~~~~~~---~l~~~l~sr~~~ 208 (382)
+...+++-|++|||++.-.+ ...+.|+.+++... ..+.+|.++++.. .+.+.+.+.+.+
T Consensus 95 gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i 174 (272)
T PF12775_consen 95 GPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNI 174 (272)
T ss_dssp EEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEE
T ss_pred CCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEE
Confidence 01234667999999976643 34567777887321 3455666666532 367888888889
Q ss_pred EEecCCCHHHHHHHHHHHHHH
Q 016800 209 FRFKPLSEEVMSSRVLHICNE 229 (382)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~ 229 (382)
+.++.|+.+.+..+...++..
T Consensus 175 ~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EE----TCCHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhh
Confidence 999999999998888776653
No 282
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.42 E-value=2.1e-06 Score=89.50 Aligned_cols=170 Identities=19% Similarity=0.260 Sum_probs=112.5
Q ss_pred ccCcHHHHHHHHHHHHcCCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHh
Q 016800 63 VAHQEEVVRVLTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (382)
.+-.+-+-+.+.+..+..... .+||.||..+|||+++..+++.. +.+++.+|.... ....+.+..+...
T Consensus 867 yIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~t------ghkfVRINNHEH---TdlqeYiGTyvTd 937 (4600)
T COG5271 867 YIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARET------GHKFVRINNHEH---TDLQEYIGTYVTD 937 (4600)
T ss_pred eEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHh------CccEEEecCccc---chHHHHhhceeec
Confidence 333344444455555443332 39999999999999999999987 567888887654 2334445544432
Q ss_pred hhcCCCCCCCCC---CCCcEEEEEeCCCCCCHHHHHHHHHHHHhc--------------CCceEEEEeecCcc------c
Q 016800 141 AVGSGQRRGGYP---CPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNYIS------R 197 (382)
Q Consensus 141 ~~~~~~~~~~~~---~~~~~vliiDe~d~l~~~~~~~Ll~~le~~--------------~~~~~~Il~~~~~~------~ 197 (382)
..+.-....+.- ..+..-|++||....+.+..++|-+++++. +++..+..+.|+|. .
T Consensus 938 d~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~ 1017 (4600)
T COG5271 938 DDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKG 1017 (4600)
T ss_pred CCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHH
Confidence 221111111110 013458999999999999999999999743 34444444455542 3
Q ss_pred cchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 016800 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS 246 (382)
Q Consensus 198 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s 246 (382)
+..+++.|+-.++|...+++|+..+|..+| .+.+.-+..|++..
T Consensus 1018 LSrAFRNRFlE~hFddipedEle~ILh~rc-----~iapSyakKiVeVy 1061 (4600)
T COG5271 1018 LSRAFRNRFLEMHFDDIPEDELEEILHGRC-----EIAPSYAKKIVEVY 1061 (4600)
T ss_pred HHHHHHhhhHhhhcccCcHHHHHHHHhccC-----ccCHHHHHHHHHHH
Confidence 778999999999999999999999996544 46666666666543
No 283
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.41 E-value=5.3e-05 Score=69.87 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=51.8
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhc--CCceEEEEeecCccccc----------------hh-hhcccc-eEEecC
Q 016800 154 PPYKIIILDEADSMTEDAQNALRRTMETY--SKVTRFFFICNYISRII----------------EP-LASRCA-KFRFKP 213 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~----------------~~-l~sr~~-~i~~~~ 213 (382)
..+-||+|||+|+++++....+++.+... .+++.||++.+.. .+. .. +.+-++ .+.+++
T Consensus 171 ~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~ 249 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPP 249 (325)
T ss_pred CceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCC
Confidence 35678999999999998877777776643 2577788877532 111 12 222233 689999
Q ss_pred CCHHHHHHHHHHHHHH
Q 016800 214 LSEEVMSSRVLHICNE 229 (382)
Q Consensus 214 ~~~~~~~~~l~~~~~~ 229 (382)
++..++..++...+..
T Consensus 250 ~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 250 PSPSDLERYLNELLES 265 (325)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999988877554
No 284
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.39 E-value=3.1e-07 Score=75.59 Aligned_cols=63 Identities=14% Similarity=0.310 Sum_probs=36.9
Q ss_pred CcEEEEEeCCCCC---CHHHHHHHHHHHHhcCCceEEEEeecC--ccccchhhhcc--cceEEecCCCHHHHH
Q 016800 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNY--ISRIIEPLASR--CAKFRFKPLSEEVMS 220 (382)
Q Consensus 155 ~~~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~--~~~l~~~l~sr--~~~i~~~~~~~~~~~ 220 (382)
...+++|||+..| .+...+++.++|+. +. .+|.+-.. ...+.+.+++| +.++.+.+-+.+.+.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s-~~--~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS-NK--PVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCT-TS--EEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcC-CC--cEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 4569999999988 45678888888883 22 23443322 34578899988 557777766655543
No 285
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.39 E-value=1.9e-05 Score=73.20 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=65.4
Q ss_pred cCCCCCCcccCcHHHHHHHH---HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 55 YRPKQVKDVAHQEEVVRVLT---NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~---~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
|.|..|+ ....+..|. .+++.+ .|+++.||+|||||+++.++.....+.. + ......
T Consensus 185 ~~P~~~~----~r~k~~~L~rl~~fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~s----------G-~f~T~a--- 244 (449)
T TIGR02688 185 YEPEGFE----ARQKLLLLARLLPLVEPN--YNLIELGPKGTGKSYIYNNLSPYVILIS----------G-GTITVA--- 244 (449)
T ss_pred CCcccCC----hHHHHHHHHhhHHHHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHHc----------C-CcCcHH---
Confidence 5665554 233333333 455544 3799999999999999999888721211 0 001111
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH----HHHHHHHHHHHhcC---------CceEEEEeecCcc
Q 016800 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----DAQNALRRTMETYS---------KVTRFFFICNYIS 196 (382)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~----~~~~~Ll~~le~~~---------~~~~~Il~~~~~~ 196 (382)
..+.......... -+.+.+|+|||+..++. +..+.+..+|++.. ....+|+++|-..
T Consensus 245 ~Lf~~L~~~~lg~--------v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 245 KLFYNISTRQIGL--------VGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred HHHHHHHHHHHhh--------hccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 1111111111110 01678999999999743 34567777787542 3566888887544
No 286
>PHA02774 E1; Provisional
Probab=98.37 E-value=3.7e-06 Score=80.60 Aligned_cols=138 Identities=22% Similarity=0.303 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC
Q 016800 68 EVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (382)
.....|..+++.....+ ++|+||||||||+++.++++.+.+ ..+..+|..... + +..+.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G-----~vi~fvN~~s~F----w---Lqpl~-------- 478 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG-----KVISFVNSKSHF----W---LQPLA-------- 478 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEEECcccc----c---cchhc--------
Confidence 34466677776543334 999999999999999999998732 122334432111 1 11111
Q ss_pred CCCCCCCCCcEEEEEeCCCCC-CHHHHHHHHHHHHhcC-------------CceEEEEeecCcc---ccchhhhcccceE
Q 016800 147 RRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYS-------------KVTRFFFICNYIS---RIIEPLASRCAKF 209 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l-~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~---~l~~~l~sr~~~i 209 (382)
+.+++++||+..- ..-....|+.+|+..+ ....+|++||..- .-.+.|.||...+
T Consensus 479 --------d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f 550 (613)
T PHA02774 479 --------DAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVF 550 (613)
T ss_pred --------cCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEE
Confidence 5579999999332 1223446777777542 1244788887432 2357888999887
Q ss_pred EecC-------------CCHHHHHHHHHHHHHHhCCC
Q 016800 210 RFKP-------------LSEEVMSSRVLHICNEEGLN 233 (382)
Q Consensus 210 ~~~~-------------~~~~~~~~~l~~~~~~~~~~ 233 (382)
.|+. ++....+.+.++...+.++.
T Consensus 551 ~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 551 EFPNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred ECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 7654 34577888888887776653
No 287
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.33 E-value=0.00044 Score=62.67 Aligned_cols=196 Identities=18% Similarity=0.177 Sum_probs=109.3
Q ss_pred CcccCcHHHHHHHHHHHHcCC--CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC--------------
Q 016800 61 KDVAHQEEVVRVLTNTLETAN--CPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-------------- 123 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-------------- 123 (382)
..+.+++..+..|...+.+.. .|. +.|+|.+|||||.+.+.+.+...-+. +.+++-+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~------vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLEN------VWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcc------eeeehHHhccHHHHHHHHHHH
Confidence 467789999999999987654 344 69999999999999999999874332 2222211
Q ss_pred -----C--cch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH---HHHHHHHHHHhcC-CceEE
Q 016800 124 -----D--RGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---AQNALRRTMETYS-KVTRF 188 (382)
Q Consensus 124 -----~--~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~---~~~~Ll~~le~~~-~~~~~ 188 (382)
. ... +.+...+..+.+...... .+..-++++|.+|.+..- ..+.|+++-+-.+ +.++|
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~-------~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i 152 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATN-------RDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI 152 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhc-------cCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE
Confidence 0 001 112222222222111110 114568999999988532 3344444444222 35566
Q ss_pred EEeecCccccchhhhcc--cceEEecCCCHHHHHHHHHHHHHHhCCCCCH----HHHHHHHH---hcCCCHHHHHHHHHH
Q 016800 189 FFICNYISRIIEPLASR--CAKFRFKPLSEEVMSSRVLHICNEEGLNLDA----EALSTLSS---ISQGDLRRAITYLQG 259 (382)
Q Consensus 189 Il~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~l~~---~s~gdlr~a~~~l~~ 259 (382)
+++.....+....=-+. ...+.|+.++.+++..++.+--. | .... .-+..+.. ...+|++.+...+..
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p--~-~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~ 229 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP--G-KRKLDVYAQFLHVLLQVFYMACRDVNELRSLISL 229 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc--c-ccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66654433321110011 12789999999999999854211 0 1221 11222221 224599988888887
Q ss_pred HHHhc-----CCCCChhh
Q 016800 260 AARLF-----GSSITSKD 272 (382)
Q Consensus 260 ~~~~~-----~~~It~~~ 272 (382)
.+... ++.|+..+
T Consensus 230 ~wpky~epi~~~~i~~~d 247 (438)
T KOG2543|consen 230 AWPKYCEPITKGKIDPTD 247 (438)
T ss_pred HHHhhccccccCCCChhH
Confidence 77544 34455444
No 288
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.32 E-value=4.5e-06 Score=70.88 Aligned_cols=121 Identities=23% Similarity=0.319 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH-------HHHH
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK-------TFAA 139 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~ 139 (382)
++..+.+...+.++. ...++.||+|||||+++..+.+.+... ...++.+.+. ......+.+... .+..
T Consensus 4 ~~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT-~~Aa~~L~~~~~~~a~Ti~~~l~ 78 (196)
T PF13604_consen 4 EEQREAVRAILTSGD-RVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPT-NKAAKELREKTGIEAQTIHSFLY 78 (196)
T ss_dssp HHHHHHHHHHHHCTC-SEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESS-HHHHHHHHHHHTS-EEEHHHHTT
T ss_pred HHHHHHHHHHHhcCC-eEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCc-HHHHHHHHHhhCcchhhHHHHHh
Confidence 344555565665543 247899999999999999988877432 2344444332 223333333211 1111
Q ss_pred hhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
...... ........+..++||||+..++......|++.+.. ..+++|+++++.
T Consensus 79 ~~~~~~-~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 79 RIPNGD-DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp EECCEE-CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cCCccc-ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 000000 00001122567999999999999888888888765 356789998754
No 289
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.8e-05 Score=72.08 Aligned_cols=156 Identities=17% Similarity=0.254 Sum_probs=86.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC-CcchHH--HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
+||+||||+|||++|..+|..- .++++.+-.++ ..+... -...++..+.-+..+ .-.++++
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS----------~lsiivv 604 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIALSS------DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS----------PLSIIVV 604 (744)
T ss_pred EEEecCCCCChHHHHHHHHhhc------CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC----------cceEEEE
Confidence 8999999999999999998864 45666554332 222211 112233322222211 4469999
Q ss_pred eCCCCCC------H----HHHHHHHHHHHhcCCc--eEEEEeecCccccchh--hhcccc-eEEecCCCH-HHHHHHHHH
Q 016800 162 DEADSMT------E----DAQNALRRTMETYSKV--TRFFFICNYISRIIEP--LASRCA-KFRFKPLSE-EVMSSRVLH 225 (382)
Q Consensus 162 De~d~l~------~----~~~~~Ll~~le~~~~~--~~~Il~~~~~~~l~~~--l~sr~~-~i~~~~~~~-~~~~~~l~~ 225 (382)
|+++++- + -..++|+-++.+.|+. -.+|+.|++...++.. +.+-+. .+..+.++. +++.++|..
T Consensus 605 DdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 605 DDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 9998872 2 2345566666654443 4566666554332221 122222 678888876 677777632
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHHH
Q 016800 226 ICNEEGLNLDAEALSTLSSISQG-----DLRRAITYLQGAA 261 (382)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~s~g-----dlr~a~~~l~~~~ 261 (382)
.++ ++++..+.+++.--+ -+.+++.+++.+.
T Consensus 685 ----~n~-fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 685 ----LNI-FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred ----ccC-CCcchhHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 232 556665555543222 2555555555443
No 290
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.28 E-value=7.9e-05 Score=69.06 Aligned_cols=107 Identities=14% Similarity=0.210 Sum_probs=69.4
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhc------CCceEEEEeecCcc---ccchhhhccc-ceEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETY------SKVTRFFFICNYIS---RIIEPLASRC-AKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~------~~~~~~Il~~~~~~---~l~~~l~sr~-~~i~~~~~~~~~~~~~l~ 224 (382)
.+.||+||++..-... .+.+.+.|-+- .....+||.|++.. .|.+++=+|. ..+.+...+++..+.++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3679999998765544 44444444321 12344667665542 3455665554 478999999999999998
Q ss_pred HHHHHhC-C-------------------CCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 225 HICNEEG-L-------------------NLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 225 ~~~~~~~-~-------------------~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
..+.... . ......++..++.-||-+.++--+.++...
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 8776531 0 124456777788888888887666666554
No 291
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.27 E-value=3.2e-06 Score=64.27 Aligned_cols=74 Identities=27% Similarity=0.437 Sum_probs=45.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC--CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
+.|+||||+|||++++.|++.+...-. ....+...++.+ +-+ .. |. +..++++|
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~----~~w----~g--------------Y~--~q~vvi~D 56 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD----KFW----DG--------------YQ--GQPVVIID 56 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc----chh----hc--------------cC--CCcEEEEe
Confidence 479999999999999999998853210 011222212211 111 11 11 45799999
Q ss_pred CCCCCCHH----HHHHHHHHHHhc
Q 016800 163 EADSMTED----AQNALRRTMETY 182 (382)
Q Consensus 163 e~d~l~~~----~~~~Ll~~le~~ 182 (382)
|+...... ....+++++...
T Consensus 57 D~~~~~~~~~~~~~~~l~~l~s~~ 80 (107)
T PF00910_consen 57 DFGQDNDGYNYSDESELIRLISSN 80 (107)
T ss_pred ecCccccccchHHHHHHHHHHhcC
Confidence 99988754 456677777643
No 292
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.26 E-value=0.00026 Score=66.86 Aligned_cols=132 Identities=22% Similarity=0.247 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch-HHHHHHHHHHHHhhhcCCCC
Q 016800 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI-NVVRTKIKTFAAVAVGSGQR 147 (382)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 147 (382)
....+.+.+..... .++++||.+|||||+++.+.+.+... .+.++..+.... ....+.+..+......
T Consensus 25 ~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~------~iy~~~~d~~~~~~~l~d~~~~~~~~~~~---- 93 (398)
T COG1373 25 LLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE------IIYINFDDLRLDRIELLDLLRAYIELKER---- 93 (398)
T ss_pred hhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc------eEEEEecchhcchhhHHHHHHHHHHhhcc----
Confidence 33444444444333 58999999999999998888776322 455555443221 1222223332222110
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc----ccchhhhcccceEEecCCCHHHHHH
Q 016800 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS----RIIEPLASRCAKFRFKPLSEEVMSS 221 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~----~l~~~l~sr~~~i~~~~~~~~~~~~ 221 (382)
+...+++||++... +-...+..+.+.... .+++++.... .....+..|...+.+.|++..|...
T Consensus 94 -------~~~yifLDEIq~v~-~W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 -------EKSYIFLDEIQNVP-DWERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred -------CCceEEEecccCch-hHHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 34599999999985 445566666665544 4556554433 3556777788899999999998865
No 293
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.24 E-value=9.5e-06 Score=62.21 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=48.8
Q ss_pred CcccCcHHHHHHHHH----HHHcCC--CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec----CCCcchHH
Q 016800 61 KDVAHQEEVVRVLTN----TLETAN--CPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA----SDDRGINV 129 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~----~l~~~~--~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~----~~~~~~~~ 129 (382)
..+.||.-+.+.+.+ .+.+.. .|- +-|+|++|||||.+++.+|+.++..+..+..+..+.+ +....++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~ 104 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDE 104 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHH
Confidence 467788766655544 444432 222 5699999999999999999998866544443333333 23334445
Q ss_pred HHHHHHHHHH
Q 016800 130 VRTKIKTFAA 139 (382)
Q Consensus 130 ~~~~l~~~~~ 139 (382)
.+..+.....
T Consensus 105 Yk~~L~~~I~ 114 (127)
T PF06309_consen 105 YKEQLKSWIR 114 (127)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 294
>PRK10536 hypothetical protein; Provisional
Probab=98.22 E-value=2.3e-05 Score=68.08 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=40.7
Q ss_pred cCCchhhh-hcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 46 QSSQPWVE-KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 46 ~~~~~~~~-k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.+|+.. ......+..+.+.......+..++... +.+++.||+|||||+++.+++...
T Consensus 39 ~~~~p~~~~~~~~~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 39 MGGVEAIGMARDSRDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred hccCCccccchhhcCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 45566533 222234455666666666677777663 368999999999999999999864
No 295
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.19 E-value=0.00012 Score=64.92 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=90.7
Q ss_pred cccCcHHHHHHHHHH---HHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNT---LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~---l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (382)
+++--+++++++.+. +...+ .|+|+.|.+|+||+++++..+.-. +..++.+.....-+..++++.++...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~------~~~~~~i~~~~~y~~~~f~~dLk~~~ 81 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFIC------GYEVFQIEITKGYSIKDFKEDLKKAL 81 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHT------TEEEE-TTTSTTTHHHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHh------ccceEEEEeeCCcCHHHHHHHHHHHH
Confidence 455556666655544 44433 579999999999999998554433 45566666655556777888887766
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHH---------------------HHHH---------------------
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQ---------------------NALR--------------------- 176 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~---------------------~~Ll--------------------- 176 (382)
......+ +..+++++|.+-...... +.+.
T Consensus 82 ~~ag~~~---------~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~ 152 (268)
T PF12780_consen 82 QKAGIKG---------KPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYE 152 (268)
T ss_dssp HHHHCS----------S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHH
T ss_pred HHHhccC---------CCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHH
Confidence 5544332 567888888765532211 1111
Q ss_pred HHHHhcCCceEEEEeecCccc-------cchhhhcccceEEecCCCHHHHHHHHHHHHHH
Q 016800 177 RTMETYSKVTRFFFICNYISR-------IIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229 (382)
Q Consensus 177 ~~le~~~~~~~~Il~~~~~~~-------l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 229 (382)
.+++.-..+..+|++-++... ..|++.++|.+..|.+.+.+.+..+-....+.
T Consensus 153 ~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 153 FFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 111222356667776554322 35888899999999999999888876655443
No 296
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.16 E-value=0.0006 Score=67.94 Aligned_cols=190 Identities=19% Similarity=0.209 Sum_probs=110.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
+|......+-++..... +..+.... ++|+-|.|+||||++-.++... .++ .......++.+++......+..+
T Consensus 14 ~P~~~~~~v~R~rL~~~----L~~~~~~RL~li~APAGfGKttl~aq~~~~~-~~~-~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 14 RPVRPDNYVVRPRLLDR----LRRANDYRLILISAPAGFGKTTLLAQWRELA-ADG-AAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCcccccccHHHHHH----HhcCCCceEEEEeCCCCCcHHHHHHHHHHhc-Ccc-cceeEeecCCccCCHHHHHHHHH
Confidence 45555566666655444 44443323 8999999999999999998733 222 12222334444432222222222
Q ss_pred HHHHHhhhcCCC-----------------------CCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCceEEEE
Q 016800 135 KTFAAVAVGSGQ-----------------------RRGGYPCPPYKIIILDEADSMTEDA-QNALRRTMETYSKVTRFFF 190 (382)
Q Consensus 135 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~~~~~~~~Il 190 (382)
..........+. ....+ .++-.+||||.|..+..+ ...+..+++.-|++..+|+
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~--~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASY--EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhh--cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 211110000000 00111 145699999999997665 4567777888899999999
Q ss_pred eecCc-cccchhhhcccceEEec----CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 016800 191 ICNYI-SRIIEPLASRCAKFRFK----PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (382)
Q Consensus 191 ~~~~~-~~l~~~l~sr~~~i~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l 257 (382)
+|... .--...++=|...+++. ..+.+|..+++.. .-+..++...+..|.+.++| .-.++.+.
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~---~~~l~Ld~~~~~~L~~~teG-W~~al~L~ 233 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLND---RGSLPLDAADLKALYDRTEG-WAAALQLI 233 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHH---cCCCCCChHHHHHHHhhccc-HHHHHHHH
Confidence 88553 33334444444433222 3567888888853 22477899999999999988 33444443
No 297
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.15 E-value=3.4e-05 Score=68.52 Aligned_cols=165 Identities=15% Similarity=0.122 Sum_probs=89.0
Q ss_pred cccCcHHHHHHHHHHH----HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTL----ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l----~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (382)
.+.|..+..+.+..++ ..|....+++.||.|+|||.+........ .....+.-.+.+|+.-....-.+++.-..+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 3556655555555555 45666569999999999999887666551 111223445566664332111122211111
Q ss_pred HHhhh-----cCCC-----------CCCCCCCCCcEEEEEeCCCCCCHH-HHHHHHHHHHh---cCCceEEEEeecCc--
Q 016800 138 AAVAV-----GSGQ-----------RRGGYPCPPYKIIILDEADSMTED-AQNALRRTMET---YSKVTRFFFICNYI-- 195 (382)
Q Consensus 138 ~~~~~-----~~~~-----------~~~~~~~~~~~vliiDe~d~l~~~-~~~~Ll~~le~---~~~~~~~Il~~~~~-- 195 (382)
..... .+.. ..+....+..-++|+||+|..-+. -|-.|..+++- ....+.+|.+|...
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 11100 0000 001111224457777899987543 45555566653 23344455555443
Q ss_pred -cccchhhhcccc---eEEecCCCHHHHHHHHHHHH
Q 016800 196 -SRIIEPLASRCA---KFRFKPLSEEVMSSRVLHIC 227 (382)
Q Consensus 196 -~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~ 227 (382)
+.+-+.++||+. ++-+++.+-++..++.++..
T Consensus 184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 456689999986 34455566678888776654
No 298
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.13 E-value=8e-06 Score=75.58 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=67.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC----------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS----------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (382)
+++|||+.|+|||.+.-.+...+-.+......+.++-.. ...++..+.. .+.
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~---~l~--------------- 125 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVAD---ELA--------------- 125 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHH---HHH---------------
Confidence 499999999999999999988874322111111111000 0011111111 111
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCceEEEEeecCc-cc-------------cchhhhcccceEEecCC
Q 016800 154 PPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYI-SR-------------IIEPLASRCAKFRFKPL 214 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~-~~-------------l~~~l~sr~~~i~~~~~ 214 (382)
++.++|.+||++--....+-.|-++++.. ...+++|.|+|.+ +. ..+.|.++|.+++++..
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 15679999999887666555555555543 3566778888753 22 23567789998888765
No 299
>PHA02624 large T antigen; Provisional
Probab=98.06 E-value=2.5e-05 Score=75.33 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC
Q 016800 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (382)
Q Consensus 71 ~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (382)
..+..+++.-...+ ++|+||+|+|||+++.++++.+. ..++.+|.+.... ..+ .+...
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~------G~vlsVNsPt~ks-~Fw-------L~pl~------- 477 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCG------GKSLNVNCPPDKL-NFE-------LGCAI------- 477 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcC------CeEEEeeCCcchh-HHH-------hhhhh-------
Confidence 33444444433333 89999999999999999999983 3345566554321 111 11111
Q ss_pred CCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhc-C-------C------ceEEEEeecCccccchhhhc
Q 016800 150 GYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY-S-------K------VTRFFFICNYISRIIEPLAS 204 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~-~-------~------~~~~Il~~~~~~~l~~~l~s 204 (382)
+.+++++|++..-.- +-..-|+..|+.. + . -...|+|+|. ..++.+++-
T Consensus 478 -----D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~ 551 (647)
T PHA02624 478 -----DQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA 551 (647)
T ss_pred -----hceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH
Confidence 557999999853211 1125677777644 1 0 0124556664 678889999
Q ss_pred ccc-eEEecC
Q 016800 205 RCA-KFRFKP 213 (382)
Q Consensus 205 r~~-~i~~~~ 213 (382)
|+. ++.|.+
T Consensus 552 Rf~~~~~F~~ 561 (647)
T PHA02624 552 RFAKVLDFKP 561 (647)
T ss_pred HHHHhccccc
Confidence 987 777754
No 300
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.06 E-value=6.2e-06 Score=75.85 Aligned_cols=147 Identities=23% Similarity=0.270 Sum_probs=73.0
Q ss_pred cccCcHHHHHHHHHHHHcCC------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC--cch
Q 016800 62 DVAHQEEVVRVLTNTLETAN------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD--RGI 127 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~------------~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~ 127 (382)
.+.|++.++..+.=.+-.+. .-|+||.|.||+|||.+.+.+.+.. ...+..++... .+.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~-------pr~v~~~g~~~s~~gL 97 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA-------PRSVYTSGKGSSAAGL 97 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT--------SSEEEEECCGSTCCCC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC-------CceEEECCCCcccCCc
Confidence 56688888876643332221 1269999999999999998665432 11222222110 000
Q ss_pred --HHHHHHH-HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCceEEEEe
Q 016800 128 --NVVRTKI-KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFFFI 191 (382)
Q Consensus 128 --~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~Il~ 191 (382)
...++.. ..+. . ..+....+...|++|||+|.|..+..+.|++.||.. +..+.++.+
T Consensus 98 ta~~~~d~~~~~~~---l----eaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa 170 (331)
T PF00493_consen 98 TASVSRDPVTGEWV---L----EAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAA 170 (331)
T ss_dssp CEEECCCGGTSSEC---E----EE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEE
T ss_pred cceeccccccceeE---E----eCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHH
Confidence 0000000 0000 0 000000115579999999999999999999999953 345667777
Q ss_pred ecCcc-------------ccchhhhcccceEE--ecCCCHHHHHHH
Q 016800 192 CNYIS-------------RIIEPLASRCAKFR--FKPLSEEVMSSR 222 (382)
Q Consensus 192 ~~~~~-------------~l~~~l~sr~~~i~--~~~~~~~~~~~~ 222 (382)
+|+.. .+.++|.||++.+. .++++.+.-..+
T Consensus 171 ~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~l 216 (331)
T PF00493_consen 171 ANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERL 216 (331)
T ss_dssp E--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHH
T ss_pred HhhhhhhcchhhhhHHhcccchhhHhhcCEEEEecccccccccccc
Confidence 77543 26789999999543 355554333333
No 301
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.05 E-value=2.5e-05 Score=72.83 Aligned_cols=143 Identities=18% Similarity=0.251 Sum_probs=84.6
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCC-----------C-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCce
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC-----------P-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~-----------~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~ 116 (382)
........| .+.|++++++.+.-++-.|.. . |+|+-|.||+.|+.+.+.+-+-. .--
T Consensus 323 e~is~sIAP----SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-------PIa 391 (729)
T KOG0481|consen 323 ERISKSIAP----SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-------PIA 391 (729)
T ss_pred HHHhhccCc----hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-------ceE
Confidence 344455556 456999999999888865521 1 49999999999999999876642 111
Q ss_pred EEeecCCCcc----hHHHHHHHH-HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC--------
Q 016800 117 LELNASDDRG----INVVRTKIK-TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------- 183 (382)
Q Consensus 117 ~~~~~~~~~~----~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------- 183 (382)
++..+..... ...+++... +|... ++ ....++..||.|||+|+|..+..-++.+.||.-.
T Consensus 392 VYTSGKGSSAAGLTASV~RD~~tReFylE---GG----AMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGI 464 (729)
T KOG0481|consen 392 VYTSGKGSSAAGLTASVIRDPSTREFYLE---GG----AMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGI 464 (729)
T ss_pred EEecCCCcccccceeeEEecCCcceEEEe---cc----eEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcc
Confidence 2222221110 011111000 00000 00 0011256799999999999999889999998432
Q ss_pred -----CceEEEEeecCccc-------------cchhhhcccceE
Q 016800 184 -----KVTRFFFICNYISR-------------IIEPLASRCAKF 209 (382)
Q Consensus 184 -----~~~~~Il~~~~~~~-------------l~~~l~sr~~~i 209 (382)
..+.++.++|+... ..++|.||+..+
T Consensus 465 TT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmI 508 (729)
T KOG0481|consen 465 TTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMI 508 (729)
T ss_pred eeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEE
Confidence 23334444554321 458999999854
No 302
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.02 E-value=3.2e-06 Score=80.98 Aligned_cols=96 Identities=13% Similarity=0.249 Sum_probs=66.7
Q ss_pred CCCCCCCCcccccccccCCCCCchHHHHhhccccccCC-----------chhhhh--cCCCCCCcccCcHHHHHHHHHHH
Q 016800 11 SGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSS-----------QPWVEK--YRPKQVKDVAHQEEVVRVLTNTL 77 (382)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~k--~~p~~~~~~~g~~~~~~~l~~~l 77 (382)
...+..|++.+++..+...+.......+|.+....... ..+..+ -+...|+|+.|.++++..+...+
T Consensus 13 ~~~~~~~sl~eyL~~vk~~p~~~~~A~~R~~~~Ig~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yGlee~ieriv~~l 92 (644)
T PRK15455 13 AAKEEEFSLQEYLELCKQDPSAYANAAERLLMAIGEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYGMEEAIEQIVSYF 92 (644)
T ss_pred HhhcccccHHHHHHHHhcChHHHhhHHHHHHHHhCCceeeecCccchhhhhhcccccccccchhcccCcHHHHHHHHHHH
Confidence 34567889999999987777776666655544332221 112211 23346789999999998888777
Q ss_pred H----c--CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 78 E----T--ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 78 ~----~--~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
. . .+.+.++|.||||+|||++++.+++.+
T Consensus 93 ~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 93 RHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred HHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 2 2 233348999999999999999999976
No 303
>PRK04296 thymidine kinase; Provisional
Probab=97.96 E-value=0.00012 Score=61.71 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=51.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-CCc----------ch-------HHHHHHHHHHHHhhhcCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDR----------GI-------NVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-~~~----------~~-------~~~~~~l~~~~~~~~~~~~ 146 (382)
.+++||+|+||||++..++..+...+ ..++.+.+. +.+ +. ....+.+..+.. .
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~---~--- 75 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE---E--- 75 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh---h---
Confidence 68999999999999999888764332 222323221 100 00 011111111111 1
Q ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
.+++.+|+|||++.++.+....|.+.+.. ....+|+++
T Consensus 76 ------~~~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tg 113 (190)
T PRK04296 76 ------GEKIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYG 113 (190)
T ss_pred ------CCCCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEe
Confidence 12567999999999987755556666543 334456665
No 304
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.96 E-value=9.4e-05 Score=59.87 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=36.6
Q ss_pred CcEEEEEeCCCCCCH---HHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~~---~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
.+.+||+||+-..-. -..+.+++++++.|+.+.+|+|+... ++.|..+++
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~---p~~l~e~AD 147 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA---PKELIEAAD 147 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCc
Confidence 788999999866521 23567889999999999999999764 334444444
No 305
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.95 E-value=1.8e-05 Score=61.79 Aligned_cols=26 Identities=42% Similarity=0.678 Sum_probs=23.5
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..|++|++|.||+||||++..++...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 45789999999999999999999765
No 306
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.95 E-value=0.0024 Score=66.13 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=74.7
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcC--Cc--eEEEEeecCccccchhhhcc--cceEEecCCCHHHHHHHHHHHHH
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYS--KV--TRFFFICNYISRIIEPLASR--CAKFRFKPLSEEVMSSRVLHICN 228 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~--~~--~~~Il~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~ 228 (382)
++-|+|+|+++..++...+.|..+|..-+ .. ..+..+.+....+....++. ...+.+.|++..+....+...+.
T Consensus 154 ~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~ 233 (849)
T COG3899 154 HPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG 233 (849)
T ss_pred CCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC
Confidence 46799999999999999888888887654 00 01111111112222222332 34899999999999999988775
Q ss_pred HhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 229 ~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
. ......+..+.+.+.+.|||--+...++.+..
T Consensus 234 ~-~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 234 C-TKLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred C-cccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 4 23467788999999999999988888876654
No 307
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.93 E-value=8.3e-05 Score=73.57 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=60.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH------------------------HHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT------------------------FAA 139 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------~~~ 139 (382)
..+|+|+|||||||++..+...+..........+.+-++.......+.+.+.. +..
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg 248 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLG 248 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhC
Confidence 38999999999999999988776321110112233444433333333332221 110
Q ss_pred hhhcCCC-CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 140 VAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 140 ~~~~~~~-~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
....... .......-...+|||||+..++......|++.+ ++.+++|++++..
T Consensus 249 ~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~~ 302 (615)
T PRK10875 249 AQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDRD 302 (615)
T ss_pred cCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecchh
Confidence 0000000 000000013469999999999888777777765 5678899998753
No 308
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.90 E-value=0.00015 Score=59.34 Aligned_cols=23 Identities=48% Similarity=0.845 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++++||+|+|||+++..++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
No 309
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.88 E-value=9.7e-05 Score=62.54 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=54.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC-----------CCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-----------GYPC 153 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~ 153 (382)
++|.||+|+||||++-.+|..+... .....++..+....-..++++..-+.+. .......... ....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILG-VPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHT-EEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhc-cccchhhcchhhHHHHHHHHHHHhh
Confidence 7999999999999999999887533 2222233333222112222222111110 0000000000 0001
Q ss_pred CCcEEEEEeCCCCCCHH--HHHHHHHHHHhc-CCceEEEEeecCc
Q 016800 154 PPYKIIILDEADSMTED--AQNALRRTMETY-SKVTRFFFICNYI 195 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~--~~~~Ll~~le~~-~~~~~~Il~~~~~ 195 (382)
.++.+|+||=+.+.+.+ ..+.+.++++.. +..+.+|+.++..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 14579999998877643 455666666654 4455566655443
No 310
>PTZ00202 tuzin; Provisional
Probab=97.85 E-value=0.0022 Score=59.92 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=42.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcCCC--C-cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETANC--P-HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~--~-~lll~Gp~G~GKt~la~~la~~l 106 (382)
-|....+++|++.....+...+..... + ...|+||+|+|||++++.+...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 366678999999999999999875433 2 27999999999999999999876
No 311
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.85 E-value=0.00028 Score=74.52 Aligned_cols=152 Identities=14% Similarity=0.215 Sum_probs=94.8
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcC--CC----
Q 016800 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQ---- 146 (382)
Q Consensus 73 l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~---- 146 (382)
+.++++-++ .+++.|.||+|||+++.++|+.. +...+.+|.++.... .+. |....+.. ++
T Consensus 1536 VlRAmqv~k--pilLEGsPGVGKTSlItaLAr~t------G~kliRINLSeQTdL---~DL---fGsd~Pve~~Gef~w~ 1601 (4600)
T COG5271 1536 VLRAMQVGK--PILLEGSPGVGKTSLITALARKT------GKKLIRINLSEQTDL---CDL---FGSDLPVEEGGEFRWM 1601 (4600)
T ss_pred HHHHHhcCC--ceeecCCCCccHHHHHHHHHHHh------cCceEEeeccccchH---HHH---hCCCCCcccCceeEec
Confidence 333444443 49999999999999999999987 345666766542111 010 10000000 00
Q ss_pred ---CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc--------------CCceEEEEeecC------ccccchhhh
Q 016800 147 ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNY------ISRIIEPLA 203 (382)
Q Consensus 147 ---~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~--------------~~~~~~Il~~~~------~~~l~~~l~ 203 (382)
.... -.+..-|++||+...+....+.|-..++.. ++++++..+-|+ ...+++.+.
T Consensus 1602 dapfL~a--mr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~ 1679 (4600)
T COG5271 1602 DAPFLHA--MRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFL 1679 (4600)
T ss_pred ccHHHHH--hhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHh
Confidence 0000 014458999999999888877777766632 245544444443 234899999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 244 (382)
.|+.++.+..++.+++..+.... -.++.++..-.++.
T Consensus 1680 nRFsvV~~d~lt~dDi~~Ia~~~----yp~v~~d~~~kiik 1716 (4600)
T COG5271 1680 NRFSVVKMDGLTTDDITHIANKM----YPQVNEDWRLKIIK 1716 (4600)
T ss_pred hhhheEEecccccchHHHHHHhh----CCccChHHHHHHHH
Confidence 99999999999999998886433 23456666544443
No 312
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.84 E-value=0.00018 Score=72.98 Aligned_cols=121 Identities=19% Similarity=0.187 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH-------HHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-------KIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~ 138 (382)
.+...+.+...... +..+++|+||||||++++++...+...+. ... +.+-++.......+.+ .+..+.
T Consensus 325 ~~~Q~~Ai~~~~~~---~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~-v~l~ApTg~AA~~L~e~~g~~a~Tih~lL 399 (720)
T TIGR01448 325 SEEQKQALDTAIQH---KVVILTGGPGTGKTTITRAIIELAEELGG-LLP-VGLAAPTGRAAKRLGEVTGLTASTIHRLL 399 (720)
T ss_pred CHHHHHHHHHHHhC---CeEEEECCCCCCHHHHHHHHHHHHHHcCC-Cce-EEEEeCchHHHHHHHHhcCCccccHHHHh
Confidence 44555555554422 25899999999999999999887642210 012 2233333222222221 111222
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
...................+|||||+..++......|++.+ +..+++|++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~ 452 (720)
T TIGR01448 400 GYGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDT 452 (720)
T ss_pred hccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECcc
Confidence 11110000000000124679999999999988777776654 456789999864
No 313
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.83 E-value=8.4e-05 Score=69.26 Aligned_cols=93 Identities=26% Similarity=0.267 Sum_probs=51.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh--cCCCCCCCceEEeecCCCcchHHHHHHHHHHH----------Hhh-hcCCCCCCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL--FGPELYKSRVLELNASDDRGINVVRTKIKTFA----------AVA-VGSGQRRGGY 151 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~-~~~~~~~~~~ 151 (382)
+++.|.||||||.+|..+++.+ ..... ...++..|.. ....++..+.... ... ..........
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~-~~~~l~~n~~---l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGK-KVLYLCGNHP---LRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDK 79 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCC-ceEEEEecch---HHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccc
Confidence 7999999999999999999998 22221 1222323322 1222232222211 000 0000000011
Q ss_pred CCCCcEEEEEeCCCCCCHH--------HHHHHHHHHHh
Q 016800 152 PCPPYKIIILDEADSMTED--------AQNALRRTMET 181 (382)
Q Consensus 152 ~~~~~~vliiDe~d~l~~~--------~~~~Ll~~le~ 181 (382)
....+.+|||||+|++... ..+.|..++..
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 2237789999999999872 24677777776
No 314
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.81 E-value=0.0023 Score=55.49 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=46.0
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHh-cCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMET-YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~-~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 224 (382)
.+.+||+||+..-. -..+.+..++-. .+-++.+|+.+.....+++.+|+-+..+-+-+.+..++..++.
T Consensus 98 ~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~ 167 (241)
T PF04665_consen 98 PRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYR 167 (241)
T ss_pred CCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHH
Confidence 46799999986421 122345555543 3446778888888899999999888854433567777665553
No 315
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00034 Score=65.34 Aligned_cols=107 Identities=13% Similarity=0.200 Sum_probs=55.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceEEeecCCCcchHHHHHHHHHHHHhh---hcCCCCCCC-----CCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRGINVVRTKIKTFAAVA---VGSGQRRGG-----YPC 153 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~-----~~~ 153 (382)
++|+||+|+||||++..+|..+... ......++..++.......+ +..+.... ......... ...
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ----L~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ----IQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH----HHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 8999999999999999999876321 11122233333321111112 22222210 000000000 011
Q ss_pred CCcEEEEEeCCCCCCHHH--HHHHHHHHHhc--CCceEEEEeecCc
Q 016800 154 PPYKIIILDEADSMTEDA--QNALRRTMETY--SKVTRFFFICNYI 195 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~~--~~~Ll~~le~~--~~~~~~Il~~~~~ 195 (382)
.++.+|+||.+++.+.+. ...+.+.++.. +..+.+|+.++..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 367899999999987543 35666666643 2245566655443
No 316
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.80 E-value=0.00021 Score=70.56 Aligned_cols=120 Identities=19% Similarity=0.244 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC--CCceEEeecCCCcchHHHHHHHHHH--------
Q 016800 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY--KSRVLELNASDDRGINVVRTKIKTF-------- 137 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~-------- 137 (382)
..+..+...+.+ +..+|+|+|||||||++..+...+...... ... +.+-++.......+.+.+...
T Consensus 149 ~Qk~A~~~al~~---~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~-I~l~APTGkAA~rL~e~~~~~~~~l~~~~ 224 (586)
T TIGR01447 149 WQKVAVALALKS---NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLR-IALAAPTGKAAARLAESLRKAVKNLAAAE 224 (586)
T ss_pred HHHHHHHHHhhC---CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCc-EEEECCcHHHHHHHHHHHHhhhcccccch
Confidence 333344444442 248999999999999999988776422110 112 233343332223333322211
Q ss_pred ----------------HHhhhcCCCCCC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 138 ----------------AAVAVGSGQRRG-GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 138 ----------------~~~~~~~~~~~~-~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
............ ....-+..+|||||+..++......|++.+ +..+++|++++.
T Consensus 225 ~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 225 ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 000000000000 000114579999999999988777766654 567889999875
No 317
>PRK13695 putative NTPase; Provisional
Probab=97.78 E-value=0.00041 Score=57.72 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=46.1
Q ss_pred CcEEEEEeCCCCC---CHHHHHHHHHHHHhcCCceEEEEeecCc--cccchhhhcccc--eEEecCCCHHHHHHHHHHHH
Q 016800 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNYI--SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHIC 227 (382)
Q Consensus 155 ~~~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~--~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~ 227 (382)
+..++++||+..+ .....+.+...++. . ..+|++++.. ....+.|.++.. ++.+.+-+.+++...+.++.
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~-~--~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDS-E--KPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhC-C--CeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 5679999997654 33445666666643 2 3466666653 245667777654 78888888888877776543
No 318
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.76 E-value=0.00055 Score=56.14 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=34.7
Q ss_pred CcEEEEEeCCCC------CCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEADS------MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d~------l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
.+.+||+||+-. ++. +.++.+|+..|+.+-+|+|+... ++.|...++
T Consensus 97 ~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD 149 (173)
T TIGR00708 97 ELDLVLLDELTYALKYGYLDV---EEVVEALQERPGHQHVIITGRGC---PQDLLELAD 149 (173)
T ss_pred CCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCc
Confidence 788999999863 333 46778889999999999998754 334554444
No 319
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.75 E-value=0.00011 Score=58.87 Aligned_cols=22 Identities=45% Similarity=0.912 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.||||+||||+++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999876
No 320
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.74 E-value=4e-05 Score=65.63 Aligned_cols=24 Identities=46% Similarity=0.780 Sum_probs=20.3
Q ss_pred CCCc-EEEeCCCCCCHHHHHHHHHH
Q 016800 81 NCPH-MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 81 ~~~~-lll~Gp~G~GKt~la~~la~ 104 (382)
+.|+ ++|||+||+|||++|+.++.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 3344 99999999999999998864
No 321
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00024 Score=58.92 Aligned_cols=28 Identities=39% Similarity=0.585 Sum_probs=24.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+|-++|+|+||+||||+++.+++.+-..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 3558999999999999999999998543
No 322
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=0.00035 Score=66.41 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=56.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCCCcchHHHHHHHHHHHHh---hhcCCCCCCC-----CCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSGQRRGG-----YPCP 154 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~-----~~~~ 154 (382)
.++|.||+|+||||++..++..+. ... ...+..++....+. .. .+.+..+... .......... ....
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~-~a-~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRI-GA-VEQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHH-HH-HHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 389999999999999999988763 121 13344444433211 11 1112221110 0000000000 0012
Q ss_pred CcEEEEEeCCCCCCH--HHHHHHHHHHHh--cCCceEEEEeecCcc
Q 016800 155 PYKIIILDEADSMTE--DAQNALRRTMET--YSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d~l~~--~~~~~Ll~~le~--~~~~~~~Il~~~~~~ 196 (382)
++.+||||.+...+. ...+.|..+++. .+..+.+|+.++...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 568999999877643 445677777772 233445566555433
No 323
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.72 E-value=0.00041 Score=57.96 Aligned_cols=43 Identities=35% Similarity=0.505 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 65 HQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.|.+++..+.+.+... ..++++|.+|+|+|||-++..++..+.
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc
Confidence 4677788888888776 556799999999999999998777764
No 324
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.68 E-value=0.00051 Score=58.15 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=65.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
++|.|+.|+|||++.+.|....+... +...+ ..+... .+. +.-++.+||+
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d~--------~~~~~--~kd~~~-~l~-------------------~~~iveldEl 104 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSDS--------INDFD--DKDFLE-QLQ-------------------GKWIVELDEL 104 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccCc--------cccCC--CcHHHH-HHH-------------------HhHheeHHHH
Confidence 79999999999999999866532211 11111 112221 121 2248999999
Q ss_pred CCCCHHHHHHHHHHHH---------------hcCCceEEEEeecCccccc-hhhhcccceEEecC
Q 016800 165 DSMTEDAQNALRRTME---------------TYSKVTRFFFICNYISRII-EPLASRCAKFRFKP 213 (382)
Q Consensus 165 d~l~~~~~~~Ll~~le---------------~~~~~~~~Il~~~~~~~l~-~~l~sr~~~i~~~~ 213 (382)
+.+.+...+.|..++- +.+..++||.+||..+-+. ++=-+|+..+.+..
T Consensus 105 ~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 105 DGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred hhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 9999888888887774 2345677888888866443 34456777777766
No 325
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.66 E-value=0.00059 Score=57.25 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.||||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999987
No 326
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.66 E-value=0.0018 Score=58.95 Aligned_cols=47 Identities=21% Similarity=0.086 Sum_probs=37.7
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHhcCCCHHHHH
Q 016800 208 KFRFKPLSEEVMSSRVLHICNEEGL---NLDAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~s~gdlr~a~ 254 (382)
.+++++++.+|++.++.......-+ ..++...+.+.-.++||++.+.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 7899999999999999987765322 2456678888888899999865
No 327
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.66 E-value=0.00057 Score=60.13 Aligned_cols=191 Identities=21% Similarity=0.162 Sum_probs=98.0
Q ss_pred CCCcccCcHHHHHHHH---HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLT---NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~---~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
...++++-+...+.+. -.-+.+. ...+||.+|.|||+.++.++... ...+.+.++...........+.
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHH
Confidence 4456776555433332 2222222 37999999999999999988764 2222232222111111000000
Q ss_pred HHHHhhhcCCC-----CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc--------cccchhh
Q 016800 136 TFAAVAVGSGQ-----RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRIIEPL 202 (382)
Q Consensus 136 ~~~~~~~~~~~-----~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~--------~~l~~~l 202 (382)
........... +.........+++++||++.|+..+.+.|.+.-++..- -+++++++. ......+
T Consensus 141 ~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi--~~vLvG~prL~~~l~~~~~~~~rl 218 (297)
T COG2842 141 AAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGI--GVVLVGMPRLFKVLRRPEDELSRL 218 (297)
T ss_pred HHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCc--eEEEecChHHHhccccchHHHHHH
Confidence 00000000000 00000012567999999999999999999999887654 356666543 1122233
Q ss_pred hcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 016800 203 ASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (382)
Q Consensus 203 ~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~ 264 (382)
.||.. .+....++..+...+...... ...+..+..+....+|++|.+-..+......+
T Consensus 219 ~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~a 279 (297)
T COG2842 219 YSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGAVGTA 279 (297)
T ss_pred HHHhhhHhhhhhhhhhhHHHHHHHHhhCc----cchHHHHHHHHHhcchhHhHHHHHHhhhhhhh
Confidence 33332 111122222333333322111 14566677777888999998877776555443
No 328
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.66 E-value=0.00024 Score=56.16 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+++++||+|+|||+++..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5899999999999999988888754
No 329
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.66 E-value=0.00026 Score=58.90 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=31.4
Q ss_pred CcEEEEEeCCCCCCHH---HHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEADSMTED---AQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~---~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
.+.+||+||+-..-.- ..+.++.+|+..|+.+-+|+|+...
T Consensus 115 ~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 115 SYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred CCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 7899999998544211 2456888889999999999999754
No 330
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.66 E-value=0.00029 Score=59.61 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
...+||+||++++++.....+ +-....++.+|++++.
T Consensus 119 ~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDP 155 (205)
T ss_dssp -SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE--
T ss_pred cceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCc
Confidence 357999999999998765544 4455677889999864
No 331
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.64 E-value=0.0003 Score=65.83 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
|..+...+.+.+......++++.||.|||||++++++...+.
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 445555555556555544599999999999999999998874
No 332
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.63 E-value=0.021 Score=54.37 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
++|+|++|+||||++..++..+..
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 899999999999999999988753
No 333
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.62 E-value=0.0017 Score=59.96 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=62.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhh---cCCCCCCC-----CCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV---GSGQRRGG-----YPCP 154 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~-----~~~~ 154 (382)
.+.|.||.|+||||+.--+|.... ........++..+.-..-.. +.++.++.... ........ ....
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~----EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAV----EQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHH----HHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 389999999999988888887764 22222233344333221111 22222221100 00000000 0011
Q ss_pred CcEEEEEeCCCCCCH--HHHHHHHHHHHhc-CCceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEADSMTE--DAQNALRRTMETY-SKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~~--~~~~~Ll~~le~~-~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
.+++|+||=+.+=.. .....|..++... +-.+.+++.++....-++.+..++.
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence 567999998876543 3345566666543 4456677777766665666665554
No 334
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.59 E-value=0.00055 Score=69.84 Aligned_cols=116 Identities=15% Similarity=0.197 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH-------HHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-------KIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~ 138 (382)
.++....+...+...+ ..+|.|++|||||++++++...+...+ ..+..+ ++.......+.+ .+..+.
T Consensus 354 s~~Q~~Av~~i~~s~~--~~il~G~aGTGKTtll~~i~~~~~~~g---~~V~~~-ApTg~Aa~~L~~~~g~~a~Ti~~~~ 427 (744)
T TIGR02768 354 SEEQYEAVRHVTGSGD--IAVVVGRAGTGKSTMLKAAREAWEAAG---YRVIGA-ALSGKAAEGLQAESGIESRTLASLE 427 (744)
T ss_pred CHHHHHHHHHHhcCCC--EEEEEecCCCCHHHHHHHHHHHHHhCC---CeEEEE-eCcHHHHHHHHhccCCceeeHHHHH
Confidence 4555566655554432 489999999999999999987663322 233333 222111111111 011111
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.. ... ......+..+|||||+..++......|++.... ..+++||+++.
T Consensus 428 ~~-~~~----~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD~ 476 (744)
T TIGR02768 428 YA-WAN----GRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGDP 476 (744)
T ss_pred hh-hcc----CcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCh
Confidence 00 000 000112668999999999998887777776554 35678888864
No 335
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.56 E-value=0.00086 Score=60.41 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=64.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCC---CCCCcEEEEE
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY---PCPPYKIIIL 161 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vlii 161 (382)
+.+||+-|.|||.+.-.+...+-.+......+.. ....+-+.+..+. +........ -.++.+|+.+
T Consensus 68 lYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~-------FM~~vH~~l~~l~----g~~dpl~~iA~~~~~~~~vLCf 136 (367)
T COG1485 68 LYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHR-------FMARVHQRLHTLQ----GQTDPLPPIADELAAETRVLCF 136 (367)
T ss_pred EEEECCCCccHHHHHHHHHhhCCccccccccHHH-------HHHHHHHHHHHHc----CCCCccHHHHHHHHhcCCEEEe
Confidence 9999999999999999998887332211111100 0011111111111 000000000 0126789999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-CCceEEEEeecCc-ccc-------------chhhhcccceEEecCC
Q 016800 162 DEADSMTEDAQNALRRTMETY-SKVTRFFFICNYI-SRI-------------IEPLASRCAKFRFKPL 214 (382)
Q Consensus 162 De~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~-~~l-------------~~~l~sr~~~i~~~~~ 214 (382)
||++--.....=.|-.+++.. ...+.+|.|+|.. +.+ .+.|.++|.++.++.+
T Consensus 137 DEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~ 204 (367)
T COG1485 137 DEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGP 204 (367)
T ss_pred eeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCC
Confidence 999876655555555666653 4466677777643 222 2566788887766555
No 336
>PRK14974 cell division protein FtsY; Provisional
Probab=97.56 E-value=0.0014 Score=60.15 Aligned_cols=23 Identities=48% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++..++..+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 337
>PRK14532 adenylate kinase; Provisional
Probab=97.54 E-value=0.0012 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++.||||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999986
No 338
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.53 E-value=0.00019 Score=77.34 Aligned_cols=147 Identities=22% Similarity=0.331 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC
Q 016800 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (382)
Q Consensus 71 ~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (382)
..+..+...++. .+||.||.|+|||.++..+++.. ..++++++.... .+.++.+..+.....+......+
T Consensus 430 a~~~~a~~~~~~-pillqG~tssGKtsii~~la~~~------g~~~vrinnheh---td~qeyig~y~~~~~g~l~freg 499 (1856)
T KOG1808|consen 430 ADLARAISSGKF-PILLQGPTSSGKTSIIKELARAT------GKNIVRINNHEH---TDLQEYIGTYVADDNGDLVFREG 499 (1856)
T ss_pred HHHHHHHhcCCC-CeEEecCcCcCchhHHHHHHHHh------ccCceehhcccc---chHHHHHHhhhcCCCCCeeeehh
Confidence 444545555554 49999999999999999999997 456666665443 23345555333222111110000
Q ss_pred CC---CCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----CCceE---------EEEeecCc------cccchhhhcccc
Q 016800 151 YP---CPPYKIIILDEADSMTEDAQNALRRTMETY-----SKVTR---------FFFICNYI------SRIIEPLASRCA 207 (382)
Q Consensus 151 ~~---~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----~~~~~---------~Il~~~~~------~~l~~~l~sr~~ 207 (382)
.. ..+...+|+||++..+.+..++|.+++++. ++..+ ++.+-|.+ ..+...+++|+.
T Consensus 500 ~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~ 579 (1856)
T KOG1808|consen 500 VLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFI 579 (1856)
T ss_pred HHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccch
Confidence 00 014569999999999999999999999862 12222 12222332 125577888888
Q ss_pred eEEecCCCHHHHHHHHHHHH
Q 016800 208 KFRFKPLSEEVMSSRVLHIC 227 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~ 227 (382)
.++|...+++++..++..++
T Consensus 580 e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 580 ELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhhcCchhhhhhhcccc
Confidence 99999999998888876544
No 339
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.53 E-value=9.7e-05 Score=57.37 Aligned_cols=22 Identities=45% Similarity=0.881 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 340
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.52 E-value=0.00062 Score=61.03 Aligned_cols=52 Identities=25% Similarity=0.407 Sum_probs=36.7
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+.+++++.-.....+.+..++... ...+++|.||+|+||||++.++...+..
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccc
Confidence 346777765555555666555554 2225999999999999999999998743
No 341
>PRK06762 hypothetical protein; Provisional
Probab=97.51 E-value=0.0033 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+|++|+||||+|+.+++.+
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
No 342
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.48 E-value=0.00074 Score=55.43 Aligned_cols=59 Identities=10% Similarity=0.179 Sum_probs=41.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecC
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~ 213 (382)
.+.+++-||.. ++.++....++.++++....-.-|+++++...+..+++.|+..++-..
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Gr 214 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGR 214 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCE
Confidence 67799999974 789999999999999875433334444445566777777776554433
No 343
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.48 E-value=0.0011 Score=68.55 Aligned_cols=189 Identities=14% Similarity=0.049 Sum_probs=103.8
Q ss_pred cCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCCCcchHHH-HHHHHHHHHhh
Q 016800 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVV-RTKIKTFAAVA 141 (382)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 141 (382)
+|++..++.+.+.+-......+-+||..|+||||+++.+.+... -...++. ++.+.-+.......+ ...+..+....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~-~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDG-VIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCce-EEEEEEcccccHHhHHHHHHHHhccCC
Confidence 99999999999888777666689999999999999999988763 1111111 111111211122221 12222111100
Q ss_pred hcCCCC--------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc----CCceEEEEeecCccccchhhhcccceE
Q 016800 142 VGSGQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY----SKVTRFFFICNYISRIIEPLASRCAKF 209 (382)
Q Consensus 142 ~~~~~~--------~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~sr~~~i 209 (382)
...... ...+-.+++-++++||+-.=- . ++.+.-+ .....+++||....- -...-.+...+
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--d----w~~I~~~~p~~~~g~KvvlTTRs~~V-~~~~m~~~~~~ 312 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--D----WDKIGVPFPSRENGSKVVLTTRSEEV-CGRAMGVDYPI 312 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccc--c----HHhcCCCCCCccCCeEEEEEeccHhh-hhccccCCccc
Confidence 000000 000112367799999975421 1 2333322 223778888865322 11111124467
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 210 RFKPLSEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
+...++.++.-..+.+.+-..... --++.+..+++.|+|-|- |++.+-..-
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPL-Al~viG~~m 366 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPL-ALNVLGGLL 366 (889)
T ss_pred cccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHH-HHHHHHHHh
Confidence 777788888888887766332111 125677888899998554 566655443
No 344
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.48 E-value=0.00072 Score=56.86 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++++||||+|||+++..++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999888764
No 345
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0023 Score=65.10 Aligned_cols=192 Identities=17% Similarity=0.167 Sum_probs=112.9
Q ss_pred CCcccCc-HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeecC----CCcchHHH
Q 016800 60 VKDVAHQ-EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNAS----DDRGINVV 130 (382)
Q Consensus 60 ~~~~~g~-~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~----~~~~~~~~ 130 (382)
++-++|+ ++..+.+.+.+......|-+|.|.||+|||.++..+++.+..-+. ....++.++.. .......+
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 5667786 666666666666555567999999999999999999998753322 11223333321 12223445
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEeecCc-----cc
Q 016800 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICNYI-----SR 197 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~~~~~-----~~ 197 (382)
...++......... ++.-|++|||++.+.. ++.|.|...+.. .. ..+|-+|+.. -.
T Consensus 265 E~rlk~l~k~v~~~---------~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r-g~-l~~IGatT~e~Y~k~ie 333 (898)
T KOG1051|consen 265 EERLKELLKEVESG---------GGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR-GG-LWCIGATTLETYRKCIE 333 (898)
T ss_pred HHHHHHHHHHHhcC---------CCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc-CC-eEEEecccHHHHHHHHh
Confidence 55555544332212 2667999999998842 334444444433 22 5666665421 12
Q ss_pred cchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhc------CCCHHHHHHHHHHHHH
Q 016800 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSIS------QGDLRRAITYLQGAAR 262 (382)
Q Consensus 198 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s------~gdlr~a~~~l~~~~~ 262 (382)
-.|++-+|++.+.++-|+.++...+|...... .|..+++.++...+..+ ..-+..++++.+.++.
T Consensus 334 kdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a 408 (898)
T KOG1051|consen 334 KDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAA 408 (898)
T ss_pred hCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHH
Confidence 46889999998889889887766666554443 34455555444433332 2334455555555554
No 346
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.45 E-value=0.0003 Score=64.17 Aligned_cols=130 Identities=22% Similarity=0.295 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC
Q 016800 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (382)
Q Consensus 71 ~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (382)
..+..+++.-...+ ++|+|||+||||.++..+.+-+. ..++.+-.+... |-..+..
T Consensus 250 ~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~------GkViSf~Ns~Sh-----------FWLqPL~------ 306 (432)
T PF00519_consen 250 IALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK------GKVISFVNSKSH-----------FWLQPLA------ 306 (432)
T ss_dssp HHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHT------SEEE-GGGTTSC-----------GGGGGGC------
T ss_pred HHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhC------CEEEEecCCCCc-----------ccccchh------
Confidence 45566666544445 99999999999999999999873 344443222111 1111111
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHH----HHHHHHHhcC-------------CceEEEEeecCc---cccchhhhcccceE
Q 016800 150 GYPCPPYKIIILDEADSMTEDAQN----ALRRTMETYS-------------KVTRFFFICNYI---SRIIEPLASRCAKF 209 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~~~~~----~Ll~~le~~~-------------~~~~~Il~~~~~---~~l~~~l~sr~~~i 209 (382)
+.++-+|||+.. ...+ -|+..++..+ .-..+++++|.. +.-..-|.||...+
T Consensus 307 -----d~Ki~llDDAT~---~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f 378 (432)
T PF00519_consen 307 -----DAKIALLDDATY---PCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCF 378 (432)
T ss_dssp -----T-SSEEEEEE-H---HHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEE
T ss_pred -----cCcEEEEcCCcc---cHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEE
Confidence 557999999743 3332 3455555322 011266777642 33467889999988
Q ss_pred EecCC-------------CHHHHHHHHHHHHHHhC
Q 016800 210 RFKPL-------------SEEVMSSRVLHICNEEG 231 (382)
Q Consensus 210 ~~~~~-------------~~~~~~~~l~~~~~~~~ 231 (382)
+|+.+ +....+.+.++...+.+
T Consensus 379 ~F~n~~P~d~~G~P~y~ltd~~WksFF~rlw~~Ld 413 (432)
T PF00519_consen 379 EFPNPFPLDENGNPVYELTDANWKSFFRRLWSQLD 413 (432)
T ss_dssp E--S-S-BSTTSSBSS---HHHHHHHHHHHTCCCT
T ss_pred EcCCccccCCCCCeeEEeccChHHHHHHHHHHhcC
Confidence 88653 34566666666554433
No 347
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0022 Score=61.68 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||++..|+..+
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998865
No 348
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0014 Score=60.68 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.||+|+||||++..++..+.
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 389999999999999999998875
No 349
>PRK14528 adenylate kinase; Provisional
Probab=97.44 E-value=0.0021 Score=54.01 Aligned_cols=25 Identities=40% Similarity=0.784 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..+++.||||+||||+++.+++.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999998763
No 350
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.43 E-value=0.0016 Score=67.73 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHH-------HHHHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV-------RTKIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~ 138 (382)
.++....+...+.... ..++.|++||||||+.+.+...+...+ ..++-+-+. ......+ ...+..+.
T Consensus 348 s~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~G---~~V~~~ApT-GkAA~~L~e~tGi~a~TI~sll 421 (988)
T PRK13889 348 SGEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAAG---YEVRGAALS-GIAAENLEGGSGIASRTIASLE 421 (988)
T ss_pred CHHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEecCc-HHHHHHHhhccCcchhhHHHHH
Confidence 4455555655554332 478999999999999988776553221 233333221 1111111 11122221
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.. +..+ .....+..+|||||+..++......|++..+. ..+++|++++.
T Consensus 422 ~~-~~~~----~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD~ 470 (988)
T PRK13889 422 HG-WGQG----RDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGDP 470 (988)
T ss_pred hh-hccc----ccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECCH
Confidence 10 0000 00112557999999999998888888777654 35678888864
No 351
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.43 E-value=0.0014 Score=55.22 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=24.4
Q ss_pred CcEEEEEeCCCCCCH-HHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
+..++||||+|.+.. .....+..++...+....+++.+..+
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 456999999999986 44445555555443334444444333
No 352
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.42 E-value=0.00081 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+|+||+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999975
No 353
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.40 E-value=0.0013 Score=58.54 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=26.9
Q ss_pred HHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 74 TNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 74 ~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
....+.++..+++|.||+|+||||+.+.++..+
T Consensus 103 ~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 103 PYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred HHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 333455555689999999999999999999876
No 354
>PRK08118 topology modulation protein; Reviewed
Probab=97.40 E-value=0.0005 Score=56.69 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.+++.||+|+||||+|+.+++.+..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58999999999999999999998443
No 355
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.40 E-value=0.00083 Score=58.99 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+...++|.||+|+|||++++.+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3335999999999999999999988743
No 356
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.40 E-value=0.047 Score=51.73 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=63.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh---hcCCCCCCC-----------
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA---VGSGQRRGG----------- 150 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~----------- 150 (382)
++|.|++|+||||++..+|..+...+ ..+.-+++...+. .. .+.++.+.... .........
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G---~kV~lV~~D~~R~-aA-~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKG---FKPCLVCADTFRA-GA-FDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcCcccch-hH-HHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999998774332 2333343332221 11 11222222110 000000000
Q ss_pred CCCCCcEEEEEeCCCCCCHH--HHHHHHHHHHhc-CCceEEEEeecCc---cccchhhhccc--ceEEecCCCHH
Q 016800 151 YPCPPYKIIILDEADSMTED--AQNALRRTMETY-SKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEE 217 (382)
Q Consensus 151 ~~~~~~~vliiDe~d~l~~~--~~~~Ll~~le~~-~~~~~~Il~~~~~---~~l~~~l~sr~--~~i~~~~~~~~ 217 (382)
....++.+||||=+.++..+ ....+.++.+.. |..+.+|+-+... ......+.... .-+-+..++..
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECccCC
Confidence 00125789999999888653 345555555433 3344455543222 12334444332 24555566553
No 357
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00091 Score=62.01 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||++..++..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999875
No 358
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.36 E-value=0.0031 Score=57.20 Aligned_cols=49 Identities=24% Similarity=0.290 Sum_probs=35.4
Q ss_pred CCCCCccc--C--cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 57 PKQVKDVA--H--QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 57 p~~~~~~~--g--~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.++++++ | .+.....|..+++.+. +++++|++|+||||+++++...+.
T Consensus 105 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~~--~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 105 VFTLDDYVEAGIMTAAQRDVLREAVLARK--NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHhh
Confidence 34555554 2 2445566777776433 699999999999999999998873
No 359
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.36 E-value=0.0019 Score=61.60 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=86.9
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcC-----------CCC-cEEEeCCCCCCHHHHHHHHHHHhcC---CCCCCC
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----------NCP-HMLFYGPPGTGKTTTALAIAHQLFG---PELYKS 114 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~lll~Gp~G~GKt~la~~la~~l~~---~~~~~~ 114 (382)
.+.....| .+.||+.+++.+.-++-.| +.. ++|+.|.|.+.|+.+.+.+.+..-- ....+.
T Consensus 294 lLa~SLAP----SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGS 369 (818)
T KOG0479|consen 294 LLARSLAP----SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGS 369 (818)
T ss_pred HHhhccCc----ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCC
Confidence 34444556 4669999999887766433 111 3999999999999999998876410 000000
Q ss_pred ceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------
Q 016800 115 RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------- 183 (382)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------- 183 (382)
.=+.+.+.-....+.-...++. .+. ..+.+.||.|||+|+|+.-..-++.+.||...
T Consensus 370 SGVGLTAAVTtD~eTGERRLEA---GAM---------VLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHas 437 (818)
T KOG0479|consen 370 SGVGLTAAVTTDQETGERRLEA---GAM---------VLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHAS 437 (818)
T ss_pred CCccceeEEeeccccchhhhhc---Cce---------EEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhh
Confidence 0000111100001111111211 111 11277899999999999888899999998542
Q ss_pred --CceEEEEeecCcc-------------ccchhhhcccceE
Q 016800 184 --KVTRFFFICNYIS-------------RIIEPLASRCAKF 209 (382)
Q Consensus 184 --~~~~~Il~~~~~~-------------~l~~~l~sr~~~i 209 (382)
..|.++.++|+.. .+.+.+.||+..+
T Consensus 438 LNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLl 478 (818)
T KOG0479|consen 438 LNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLL 478 (818)
T ss_pred hccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEE
Confidence 4566777777542 2778999999843
No 360
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0018 Score=60.56 Aligned_cols=22 Identities=41% Similarity=0.783 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+||||++..++...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999764
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.0022 Score=52.34 Aligned_cols=96 Identities=19% Similarity=0.252 Sum_probs=55.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-----------------chHHHHHHHHHHHHhhhcCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-----------------GINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~ 146 (382)
.+.|.||.|+||||+++.++..+. +. ..-+.++..+.. +.... ..+. +... ..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~-~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~-~r~~-l~~~-l~--- 96 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLK-PT---SGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQR-QRVA-LARA-LL--- 96 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CC---ccEEEECCEEcccCCHHHHHhceEEEeeCCHHHH-HHHH-HHHH-Hh---
Confidence 489999999999999999987652 11 111223221100 00000 0010 1111 00
Q ss_pred CCCCCCCCCcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc
Q 016800 147 RRGGYPCPPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 196 (382)
.+.+++++||.. .++......+.+.+.+... ...+++++....
T Consensus 97 -------~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 97 -------LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred -------cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 155799999987 6778888888888876433 245677766543
No 362
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.35 E-value=0.067 Score=50.89 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=22.0
Q ss_pred Cc-EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PH-MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~-lll~Gp~G~GKt~la~~la~~l~ 107 (382)
|. ++|.|++|+||||++..+|..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 44 89999999999999999998863
No 363
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.34 E-value=0.0035 Score=57.60 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 71 ~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..|...++.+. +++++|++|+||||+++++...+.
T Consensus 151 ~~L~~~v~~~~--nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 151 EFLEHAVISKK--NIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHHHHHcCC--cEEEECCCCCCHHHHHHHHHhhCC
Confidence 34444444433 699999999999999999998873
No 364
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.32 E-value=0.00042 Score=60.59 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999987
No 365
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.32 E-value=0.003 Score=55.27 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++++|+||+|||+++..++...
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 8999999999999999998764
No 366
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.31 E-value=0.0041 Score=54.98 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
No 367
>PRK10867 signal recognition particle protein; Provisional
Probab=97.30 E-value=0.072 Score=50.72 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=22.3
Q ss_pred Cc-EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 83 PH-MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 83 ~~-lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
|. ++|+|++|+||||++..+|..+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 44 899999999999999999987743
No 368
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.30 E-value=0.0035 Score=55.77 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=38.2
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+..++++-..+...+.|..++.... ..++|.||+|+||||+++++...+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3456666556777777877776543 2589999999999999999988874
No 369
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.29 E-value=0.0059 Score=55.58 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|+||+||||+++.+++.+
T Consensus 5 iil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC
Confidence 7899999999999999999986
No 370
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.29 E-value=0.0016 Score=61.74 Aligned_cols=54 Identities=28% Similarity=0.321 Sum_probs=43.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~ 110 (382)
...+++++...+.....+.+++..... -+|++||.|+||||+..++.+.++.+.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~p~G-liLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNRPQG-LILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhCCCe-EEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 355677777778888888888776542 389999999999999999999997654
No 371
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.28 E-value=0.0025 Score=52.39 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=55.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc--h-HHHHHH-----------HHH--HHHhhhcCCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--I-NVVRTK-----------IKT--FAAVAVGSGQR 147 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~~-----------l~~--~~~~~~~~~~~ 147 (382)
.+.|.||+|+||||+.+.++.... +. ..-+.++..+... . +..+.. .+. ++.. ..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~-~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~lara-l~---- 98 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK-PD---SGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARA-LA---- 98 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CC---CeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHH-Hh----
Confidence 589999999999999999987642 21 1112222211100 0 000000 000 0100 11
Q ss_pred CCCCCCCCcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 148 RGGYPCPPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
.+++++++||.. .++......+.+.+.+.. ....+|+++.+..
T Consensus 99 ------~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 99 ------RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred ------cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 166899999976 578888888888887653 2345666666543
No 372
>PF13245 AAA_19: Part of AAA domain
Probab=97.27 E-value=0.00044 Score=48.66 Aligned_cols=24 Identities=50% Similarity=0.719 Sum_probs=18.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.||||+|||+++...+..+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367799999999977666666654
No 373
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.24 E-value=0.00025 Score=60.11 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=35.9
Q ss_pred CcEEEEEeCCCCCCHH-HH-----HHHHHHHHh-cCCceEEEEeecCccccchhhhcccc-eEEecC
Q 016800 155 PYKIIILDEADSMTED-AQ-----NALRRTMET-YSKVTRFFFICNYISRIIEPLASRCA-KFRFKP 213 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~-----~~Ll~~le~-~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~ 213 (382)
...++||||++..-+. .. ....+.+.. .....-++++|..+..+.+.++..+. .+.+..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 3469999999976322 11 233355443 44567799999999999999998776 444443
No 374
>PF13479 AAA_24: AAA domain
Probab=97.23 E-value=0.00056 Score=58.89 Aligned_cols=18 Identities=61% Similarity=1.180 Sum_probs=17.1
Q ss_pred EEEeCCCCCCHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAI 102 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~l 102 (382)
++|||+||+|||+++..+
T Consensus 6 ~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEECCCCCCHHHHHHhC
Confidence 899999999999999887
No 375
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.23 E-value=0.0026 Score=66.74 Aligned_cols=116 Identities=13% Similarity=0.148 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH-------HHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-------KIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~ 138 (382)
.++....+...... ....++.|++||||||+++.+...+...+ ..++-+-+ .......+.+ .+..+.
T Consensus 383 s~eQ~~Av~~i~~~--~r~~~v~G~AGTGKTt~l~~~~~~~e~~G---~~V~g~Ap-TgkAA~~L~e~~Gi~a~TIas~l 456 (1102)
T PRK13826 383 SDEQKTAIEHVAGP--ARIAAVVGRAGAGKTTMMKAAREAWEAAG---YRVVGGAL-AGKAAEGLEKEAGIQSRTLSSWE 456 (1102)
T ss_pred CHHHHHHHHHHhcc--CCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEcC-cHHHHHHHHHhhCCCeeeHHHHH
Confidence 34444455444322 22489999999999999999887653222 23333322 2111111111 111111
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.. ... .........||||||+..++......|++.++. ..+++|++++.
T Consensus 457 l~-~~~----~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD~ 505 (1102)
T PRK13826 457 LR-WNQ----GRDQLDNKTVFVLDEAGMVASRQMALFVEAVTR--AGAKLVLVGDP 505 (1102)
T ss_pred hh-hcc----CccCCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence 00 000 001112567999999999999988888888864 34678888864
No 376
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.23 E-value=0.0035 Score=53.74 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=32.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++++||||+|||+++..++...... ...++.++... .....+.+.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC-CCHHHHHHH
Confidence 8999999999999999998876433 24567777654 334444443
No 377
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.22 E-value=0.003 Score=56.23 Aligned_cols=94 Identities=21% Similarity=0.322 Sum_probs=48.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec-------C---CCcchHHHHHHHHHHHHhhhcCCCCCCCCC
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-------S---DDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 152 (382)
|-++++|-||+|||++++.|.+.+.... ..+..++. . +......++..+.........
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~---~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls--------- 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKG---KEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS--------- 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT-----EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT---------
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcC---CEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc---------
Confidence 5689999999999999999999875422 22222221 1 122234455555554444433
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 016800 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 153 ~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
+..+||+|+..++ +...-.|..+-....-...+|.+
T Consensus 70 --~~~iVI~Dd~nYi-Kg~RYelyclAr~~~~~~c~i~~ 105 (270)
T PF08433_consen 70 --KDTIVILDDNNYI-KGMRYELYCLARAYGTTFCVIYC 105 (270)
T ss_dssp --T-SEEEE-S---S-HHHHHHHHHHHHHTT-EEEEEEE
T ss_pred --cCeEEEEeCCchH-HHHHHHHHHHHHHcCCCEEEEEE
Confidence 4479999998766 45555666655554433333333
No 378
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.22 E-value=0.0065 Score=55.49 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.||+|+||||+++++...+
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 69999999999999999999876
No 379
>PRK14527 adenylate kinase; Provisional
Probab=97.22 E-value=0.0038 Score=52.73 Aligned_cols=25 Identities=44% Similarity=0.681 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
.+++.||||+||||+++.+++.+..
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999988743
No 380
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.21 E-value=0.0055 Score=49.16 Aligned_cols=93 Identities=18% Similarity=0.312 Sum_probs=54.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 156 (382)
.+.+.||+|+||||+++.++.... +.. .-+.++.. ..++-..-+-.+.... . .+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~-~~~---G~i~~~~~~~i~~~~~lS~G~~~rv~laral---~-----------~~p 89 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELE-PDE---GIVTWGSTVKIGYFEQLSGGEKMRLALAKLL---L-----------ENP 89 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC-CCc---eEEEECCeEEEEEEccCCHHHHHHHHHHHHH---h-----------cCC
Confidence 489999999999999999987652 211 11111110 0111111111111111 1 156
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 157 KIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 157 ~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++||.. .++......+.+.+.+.. ..+++++....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~~--~til~~th~~~ 128 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEYP--GTVILVSHDRY 128 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHcC--CEEEEEECCHH
Confidence 799999975 678888888888887752 34666666543
No 381
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=97.21 E-value=0.004 Score=48.41 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------------------CCCC
Q 016800 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET---------------------------------EDIS 332 (382)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~---------------------------------~~~~ 332 (382)
|.++|++..++...+.+.++.|..+|.+|..++..+.+.++.. .+.+
T Consensus 2 F~L~Da~L~G~~~ra~riL~~L~~Eg~ep~~lLw~L~rElr~L~~l~~~~~~~~l~~~~~~~rIW~~Rq~l~~~Al~Rls 81 (125)
T PF14840_consen 2 FQLIDALLAGDAKRALRILQGLQAEGVEPPILLWALQRELRLLIQLKQALAQQPLQQLFKQLRIWQKRQPLYQQALQRLS 81 (125)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHTT-CCHHHHHHHHHHHS-
T ss_pred CcHHHHHHCCCHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHhHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999887665554431 4677
Q ss_pred HHHHHHHHHHHHHHhhHhhcC--CChHHHHHHHHHHHH
Q 016800 333 DEQQARICKCLAEVDKCLVDG--ADEYLQLLDVASNVI 368 (382)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~g--~~~~l~l~~l~~~l~ 368 (382)
...+..++..++.+|..+|.+ .++...|+.+.+.+|
T Consensus 82 ~~~L~~ll~~~a~iD~~iKg~~~~~~W~~L~~L~L~lc 119 (125)
T PF14840_consen 82 LQQLEQLLQLLAQIDRAIKGNYQGDPWDELEQLSLLLC 119 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTSTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHc
Confidence 888999999999999999976 488889999988877
No 382
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.21 E-value=0.0041 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.||+|+|||+++..++..+.
T Consensus 27 ~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999877766553
No 383
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.21 E-value=0.0035 Score=53.91 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.++|+||.|+|||++.+.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 389999999999999999984
No 384
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.18 E-value=0.038 Score=51.98 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=59.3
Q ss_pred cEEEEEeCCCCC---CH-----HHHHHHHHHHHhcC----CceEEEEeecCc------cc--cchhhhccc---------
Q 016800 156 YKIIILDEADSM---TE-----DAQNALRRTMETYS----KVTRFFFICNYI------SR--IIEPLASRC--------- 206 (382)
Q Consensus 156 ~~vliiDe~d~l---~~-----~~~~~Ll~~le~~~----~~~~~Il~~~~~------~~--l~~~l~sr~--------- 206 (382)
.-+|+|||++.+ +. ..-+.|+.++++.. ++.-|++++++. .. -.++|.+|.
T Consensus 240 GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~ 319 (416)
T PF10923_consen 240 GLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDG 319 (416)
T ss_pred ceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccccccc
Confidence 359999999876 22 34578888887632 456677776431 11 245666553
Q ss_pred ------ceEEecCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHhc
Q 016800 207 ------AKFRFKPLSEEVMSSRVLHICNEE------GLNLDAEALSTLSSIS 246 (382)
Q Consensus 207 ------~~i~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~s 246 (382)
.++.++|++.+++..++.++..-. ...++++.+..+++.+
T Consensus 320 ~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~ 371 (416)
T PF10923_consen 320 FDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHV 371 (416)
T ss_pred ccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 368999999999998887765421 2346777776666544
No 385
>PRK02496 adk adenylate kinase; Provisional
Probab=97.18 E-value=0.0018 Score=54.40 Aligned_cols=24 Identities=46% Similarity=0.949 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.||||+||||+++.+++.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999873
No 386
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.17 E-value=0.0036 Score=52.24 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=32.7
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 198 (382)
+++++++||.. .++......+.+.+.+......+|+++.+...+
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 67899999975 678888888888887654455577777765543
No 387
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.16 E-value=0.0022 Score=54.49 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++.+++..+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 79999999999999999998874
No 388
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.16 E-value=0.0046 Score=52.25 Aligned_cols=22 Identities=45% Similarity=0.847 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.||||+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999986
No 389
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.16 E-value=0.0032 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++++||+|+||+++.+.++...
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 48999999999999999999865
No 390
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.16 E-value=0.0065 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+++.|+.|+|||.+.+.++.-++..
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~ 55 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMN 55 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhC
Confidence 8999999999999999999877543
No 391
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.15 E-value=0.0052 Score=51.09 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=53.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec-------CCC-cchHHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-------SDD-RGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (382)
.+.|.||.|+||||+++.++..+. +.. .-+.++. ... .+..+ +..+.- +..-. .+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~-p~~---G~i~~~g~~i~~~~q~~~LSgGq-~qrv~l-aral~-----------~~ 89 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLI-PNG---DNDEWDGITPVYKPQYIDLSGGE-LQRVAI-AAALL-----------RN 89 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC-CCC---cEEEECCEEEEEEcccCCCCHHH-HHHHHH-HHHHh-----------cC
Confidence 489999999999999999987652 211 0111111 110 11111 111111 11111 15
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CceEEEEeecCc
Q 016800 156 YKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYI 195 (382)
Q Consensus 156 ~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~ 195 (382)
.+++++||.. .+.......+.+.+.+.. ....+|+++...
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 6799999976 667788888887776542 224466666654
No 392
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.0068 Score=50.19 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=32.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+.+++++||.. .++......+.+++.+......+|+++.....
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 66899999975 67888888888888776544567777776544
No 393
>PRK05973 replicative DNA helicase; Provisional
Probab=97.12 E-value=0.0084 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|+||+|||+++..++....
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999988764
No 394
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.11 E-value=0.00053 Score=59.75 Aligned_cols=38 Identities=42% Similarity=0.592 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.....+..++.... -.+++||||||||+++..++..+
T Consensus 4 ~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 4 ESQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344455555554432 37999999999999888888876
No 395
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.11 E-value=0.0062 Score=56.83 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
..|-+.+..|-.+. ++++|+||+|||+++..++..+... ...++++...
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E 119 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE 119 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence 34445555554443 8999999999999999999876432 1345556554
No 396
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.11 E-value=0.0062 Score=56.50 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+..++... ...++|+||+|+||||+++++...+.
T Consensus 113 ~l~~~~~~~-~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 113 VLRELAERP-RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 344444332 23599999999999999999998874
No 397
>PRK13808 adenylate kinase; Provisional
Probab=97.10 E-value=0.011 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.697 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++|+||||+||||++..|++.+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999873
No 398
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.10 E-value=0.0024 Score=52.45 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.||+|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999987
No 399
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.10 E-value=0.0058 Score=51.37 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
++....|...++.+. .++|.||+|+||||++++++..+
T Consensus 12 ~~~~~~l~~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 12 PLQAAYLWLAVEARK--NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 455566666666654 69999999999999999999876
No 400
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.10 E-value=0.0062 Score=51.22 Aligned_cols=127 Identities=25% Similarity=0.313 Sum_probs=58.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe 163 (382)
-++|+||+|+|||.++-.+++... ..++..+... .+......++-.......+-++ +++||
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g------~pvI~~Driq------------~y~~l~v~Sgrp~~~el~~~~R-iyL~~ 63 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTG------APVISLDRIQ------------CYPELSVGSGRPTPSELKGTRR-IYLDD 63 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--------EEEEE-SGG------------G-GGGTTTTT---SGGGTT-EE-EES--
T ss_pred EEEEECCCCCChhHHHHHHHHHhC------CCEEEeccee------------cccccccccCCCCHHHHcccce-eeecc
Confidence 379999999999999999999983 3344333211 0111111111000000011334 67765
Q ss_pred CCC----CC-HHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc-------ceEEecCCCHHHHHHHHHHHHHH
Q 016800 164 ADS----MT-EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC-------AKFRFKPLSEEVMSSRVLHICNE 229 (382)
Q Consensus 164 ~d~----l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~-------~~i~~~~~~~~~~~~~l~~~~~~ 229 (382)
-.- ++ .++.+.|...+.+....--+|+-+-+.+.+..-..++. .+..++-++.+......++++++
T Consensus 64 r~l~~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 64 RPLSDGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp --GGG-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 322 23 34556777788877766667777655444333333322 14555556666666666555544
No 401
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.09 E-value=0.009 Score=51.60 Aligned_cols=36 Identities=36% Similarity=0.636 Sum_probs=27.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
++++|+||+|||+++..++...... +..++.++...
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~~---g~~v~yi~~e~ 57 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQ---GKKVAYIDTEG 57 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCC
Confidence 8999999999999999999887433 24566666543
No 402
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.09 E-value=0.03 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.+++.|++|+|||++++.+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 456999999999999999998875
No 403
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.07 E-value=0.0022 Score=50.25 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.++|.|+.|+||||+++.+++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 38999999999999999999998543
No 404
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.07 E-value=0.0076 Score=52.38 Aligned_cols=35 Identities=31% Similarity=0.604 Sum_probs=26.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++++||||+|||+++..++...... ...++.++..
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~---~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKN---GKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 7999999999999999999876432 2445555554
No 405
>PRK07261 topology modulation protein; Provisional
Probab=97.06 E-value=0.0019 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+||||+++.+++.+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998863
No 406
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.05 E-value=0.0054 Score=51.26 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=31.0
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++++++||.. .++......+.+.+.+... ...+|+++....
T Consensus 115 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 67899999976 6788888888888876533 345677776544
No 407
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.013 Score=54.07 Aligned_cols=49 Identities=31% Similarity=0.445 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
..|.+.+..|-.|. +|+-|.||.||||+...++..+.... +++++.+.+
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEE 130 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEE 130 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCc
Confidence 56677777776665 89999999999999999998874332 566666643
No 408
>PRK14531 adenylate kinase; Provisional
Probab=97.02 E-value=0.0042 Score=52.12 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.||||+||||+++.+++.+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999873
No 409
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0031 Score=54.31 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+||||||+.+-+-+.+
T Consensus 30 ~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 8999999999999999776654
No 410
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.01 E-value=0.00071 Score=61.44 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=38.6
Q ss_pred CCC-cccCcHHHHHHHHHHHHcC------CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 59 QVK-DVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 59 ~~~-~~~g~~~~~~~l~~~l~~~------~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.|+ ++.|-++.+..|...++.. +...++|.||.|+|||+++..+.+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 344 8999999998887777543 12238999999999999999999887
No 411
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.01 E-value=0.0027 Score=57.90 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=71.9
Q ss_pred CcccC-cHHHHHHHHHHHHc---C--CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH
Q 016800 61 KDVAH-QEEVVRVLTNTLET---A--NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 61 ~~~~g-~~~~~~~l~~~l~~---~--~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
.++.+ .++....+.+++.. + .... ++++|+.|+|||+++..+.+.+ ++.... ...+ ........
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~-G~~~~~-----~~~~--~~~~~~~~- 118 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLL-GDYATT-----AVAS--LKMNEFQE- 118 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHh-Chhhcc-----CCcc--hhhhhccC-
Confidence 34443 45566667666532 2 2222 8999999999999998776554 332100 0000 00000000
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH--------------hcCCceEEEEeecCcccc-
Q 016800 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME--------------TYSKVTRFFFICNYISRI- 198 (382)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le--------------~~~~~~~~Il~~~~~~~l- 198 (382)
..+.... ..+.++++++|++.-.....+.|..+.. +......+|+.+|....+
T Consensus 119 -~~f~~a~-----------l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~ 186 (304)
T TIGR01613 119 -HRFGLAR-----------LEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR 186 (304)
T ss_pred -CCchhhh-----------hcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC
Confidence 0000000 1167899999987533223344444442 112356688889876554
Q ss_pred --chhhhcccceEEecC
Q 016800 199 --IEPLASRCAKFRFKP 213 (382)
Q Consensus 199 --~~~l~sr~~~i~~~~ 213 (382)
...+.+|..++.|+.
T Consensus 187 ~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 187 GFDGGIKRRLRIIPFTK 203 (304)
T ss_pred CCChhheeeEEEEeccC
Confidence 367888999998864
No 412
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.00 E-value=0.0056 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++++||||+|||+++..++....
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a 61 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQA 61 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999887653
No 413
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.00 E-value=0.016 Score=53.01 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++..++..+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 88999999999999999999874
No 414
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.99 E-value=0.0063 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|+||+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 47999999999999999999875
No 415
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.01 Score=50.40 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=25.6
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 75 ~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+-....-+.|+.||||+||||+.+-+++.+.
T Consensus 130 ~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 130 KDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred HHHHhcCceeeEEecCCCCChHHHHHHHHHHhh
Confidence 333333344689999999999999999999873
No 416
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.99 E-value=0.0016 Score=58.53 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++..++..+.
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998774
No 417
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0049 Score=52.86 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=38.0
Q ss_pred CcEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCceEEEEeecCccccchhhhccc
Q 016800 155 PYKIIILDE-ADSMTEDAQNALRRTMETY---SKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 155 ~~~vliiDe-~d~l~~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
.+.++|+|| +..|.......|++.+++. +....+|++|...+.+++-+-.+.
T Consensus 189 ~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 677999999 4667777777888887753 335568888988888777655443
No 418
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.98 E-value=0.011 Score=58.51 Aligned_cols=51 Identities=16% Similarity=0.306 Sum_probs=39.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.+++++-..++..+.+.+.+.... ..++|+||+|+||||+..++.+.+..+
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~~~-Glilv~G~tGSGKTTtl~a~l~~~~~~ 343 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHKPQ-GMVLVTGPTGSGKTVSLYTALNILNTE 343 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 356666556777788887775543 248999999999999999999887543
No 419
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.97 E-value=0.0096 Score=49.41 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=30.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 196 (382)
+.+++++||.- .++......+.+.+.+... ...+|+++.+..
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 66899999976 6788888888888876532 445777776654
No 420
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.97 E-value=0.0092 Score=57.31 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
..|-+.+..|-.+. ++|+|+||+|||+++..++...... ..+++++...+
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ee 118 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEE 118 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccc
Confidence 34455555553333 8999999999999999999876422 24556666543
No 421
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.96 E-value=0.00067 Score=53.08 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|++|+||||+++.|.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999985
No 422
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.96 E-value=0.0011 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|+|+||+|||++++.+++.+
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 359999999999999999999987
No 423
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.96 E-value=0.012 Score=57.06 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=39.3
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+.+++++-..++..+.|...+.... ..++++||+|+||||+..++...+..
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~~~-GlilitGptGSGKTTtL~a~L~~l~~ 268 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRRPH-GIILVTGPTGSGKTTTLYAALSRLNT 268 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 4466776556777788887776543 24899999999999999998888753
No 424
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.96 E-value=0.0094 Score=52.11 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=32.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC---CCCceEEeecCCCcchHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPEL---YKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+.|+||||+|||+++..++.....+.. ....++.++..+......+...
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~ 73 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQI 73 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHH
Confidence 799999999999999999866432221 1246677777654344444333
No 425
>PRK13947 shikimate kinase; Provisional
Probab=96.96 E-value=0.0011 Score=55.00 Aligned_cols=24 Identities=38% Similarity=0.521 Sum_probs=22.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++++.|+||+|||++++.+++.+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 426
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.95 E-value=0.0041 Score=57.83 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+...++|.||+|+|||++++.+++.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 333499999999999999999999864
No 427
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.94 E-value=0.006 Score=52.63 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++++||||+||||+++.+++.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 79999999999999999999873
No 428
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.94 E-value=0.0041 Score=53.42 Aligned_cols=22 Identities=45% Similarity=0.844 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.||||+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999876
No 429
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.94 E-value=0.012 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||+|+|||++++.+.+..
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999998864
No 430
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.94 E-value=0.0047 Score=60.00 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=54.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
++++|+||+||||+|+.++... ....++.... + .....+ ......... + +-+|||.
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~--------g~~~vn~D~l-g--~~~~~~-~~a~~~L~~----------G-~sVVIDa- 427 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPA--------GYKHVNADTL-G--STQNCL-TACERALDQ----------G-KRCAIDN- 427 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHc--------CCeEECcHHH-H--HHHHHH-HHHHHHHhC----------C-CcEEEEC-
Confidence 8999999999999999998864 1233443221 1 111111 111111111 2 3456654
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcc
Q 016800 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (382)
Q Consensus 165 d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 205 (382)
-.+.......+.++..+..-.++++....+.+.....++.|
T Consensus 428 Tn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 428 TNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence 45677777888888877665555555544433333333333
No 431
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.93 E-value=0.012 Score=64.75 Aligned_cols=124 Identities=20% Similarity=0.214 Sum_probs=69.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceEEeecCCCcchHHHH------HHHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVR------TKIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~ 138 (382)
.+.....+..++.+.. ...++.|.+||||||+++.+...+.. .......++-+ ++.......++ ..+..|.
T Consensus 969 t~~Q~~Av~~il~s~d-r~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~gl-APTgrAAk~L~e~Gi~A~TI~s~L 1046 (1747)
T PRK13709 969 TSGQRAATRMILESTD-RFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGL-GPTHRAVGEMRSAGVDAQTLASFL 1046 (1747)
T ss_pred CHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEE-CCcHHHHHHHHhcCcchhhHHHHh
Confidence 4555566666665432 25899999999999999998877521 00011223333 22211111111 1122222
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
..... .............|+||||+..++......|++.++. ..+++||+++.
T Consensus 1047 ~~~~~-~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~--~garvVLVGD~ 1099 (1747)
T PRK13709 1047 HDTQL-QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVSSGDT 1099 (1747)
T ss_pred ccccc-ccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhc--CCCEEEEecch
Confidence 11000 0000001112457999999999999988889888864 24678898864
No 432
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.93 E-value=0.047 Score=43.62 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.+++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 433
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.92 E-value=0.0079 Score=65.33 Aligned_cols=124 Identities=21% Similarity=0.213 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceEEeecCCCcchHHHH------HHHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVR------TKIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~ 138 (382)
.+.....+..++.... ..+++.|.+|||||++++.+...+.. .......++-+ ++.......++ ..+..|.
T Consensus 837 t~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~gl-APTgkAa~~L~e~Gi~A~TIasfL 914 (1623)
T PRK14712 837 TSGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGL-GPTHRAVGEMRSAGVDAQTLASFL 914 (1623)
T ss_pred CHHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEE-echHHHHHHHHHhCchHhhHHHHh
Confidence 4566666666665533 24899999999999998887765421 00011223323 22211111111 1122222
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
..... ..........+..++||||+..++......|++.++. ..+++|++++.
T Consensus 915 ~~~~~-~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~ 967 (1623)
T PRK14712 915 HDTQL-QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDT 967 (1623)
T ss_pred ccccc-hhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcch
Confidence 11000 0000000011457999999999999888888888864 34678998864
No 434
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.92 E-value=0.0008 Score=62.15 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=23.5
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+....+|.||+|+|||++++.+++.+..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 3334899999999999999999998743
No 435
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.92 E-value=0.0011 Score=45.79 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 436
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.024 Score=48.69 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+=|.|++|+||||+.+.++..+
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCcc
Confidence 48899999999999999998876
No 437
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.91 E-value=0.0082 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.++++||.|+||||+.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 489999999999999999984
No 438
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.89 E-value=0.017 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||+++..+...
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998764
No 439
>PRK03839 putative kinase; Provisional
Probab=96.89 E-value=0.0011 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 440
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.88 E-value=0.0088 Score=58.49 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=32.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
+++++++||+- .+.++....+++.+.+.-+.+.+|-++..+
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 77899999985 678899999999999865556677776543
No 441
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.001 Score=53.82 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++++|.||+||||++..+. .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 47899999999999999998 54
No 442
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.86 E-value=0.025 Score=46.80 Aligned_cols=23 Identities=48% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.||+|+|||+++..++..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998764
No 443
>PLN02674 adenylate kinase
Probab=96.86 E-value=0.014 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.718 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++|.||||+||+|.+..+++.+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 459999999999999999999986
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.86 E-value=0.017 Score=48.70 Aligned_cols=40 Identities=10% Similarity=0.251 Sum_probs=27.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecC
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~ 194 (382)
+++++++||.. .|.++.....+..|.+... ....|++|..
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHE 195 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE 195 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEech
Confidence 67899999986 5688888888888876432 2334555543
No 445
>PRK06547 hypothetical protein; Provisional
Probab=96.85 E-value=0.0023 Score=52.92 Aligned_cols=30 Identities=37% Similarity=0.374 Sum_probs=23.8
Q ss_pred HHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 77 LETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 77 l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+..++...+++.|++|+||||+++.+++.+
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 333333348899999999999999999986
No 446
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.85 E-value=0.0076 Score=50.06 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=29.5
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 156 YKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 156 ~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
.+++++||.. .++......+.+.+.+.. ....+|+++.+.+
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 7899999975 567888888888777643 2345677777654
No 447
>PRK10436 hypothetical protein; Provisional
Probab=96.85 E-value=0.0068 Score=58.19 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=38.6
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.+++++-..+...+.+.+.+.... ..+|++||+|+||||++.++.+.+..+
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~~~-GliLvtGpTGSGKTTtL~a~l~~~~~~ 245 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQPQ-GLILVTGPTGSGKTVTLYSALQTLNTA 245 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHhcC-CeEEEECCCCCChHHHHHHHHHhhCCC
Confidence 366666556777778887775543 248999999999999999988887543
No 448
>PRK00625 shikimate kinase; Provisional
Probab=96.85 E-value=0.0013 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.|.||+||||+++.+++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 449
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.84 E-value=0.01 Score=48.51 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||+++..+...-+
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~ 25 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGY 25 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 78999999999999998876543
No 450
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.83 E-value=0.021 Score=49.51 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=32.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceEEeecCCCcchHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
+.|+||||+|||+++..++.....++ .....++.++..+......+..
T Consensus 22 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred EEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 89999999999999999987753321 0124566777655433334433
No 451
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.82 E-value=0.015 Score=50.04 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=55.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCC---c-----------eEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKS---R-----------VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (382)
+++.|++|+|||+++..+....+....... . .+.+..-|..+....+.....+...
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~---------- 77 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRG---------- 77 (219)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcC----------
Confidence 899999999999999999988765322111 0 0112222444555555444333211
Q ss_pred CCCCCcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcccc
Q 016800 151 YPCPPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYISRI 198 (382)
Q Consensus 151 ~~~~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l 198 (382)
+..-+++.|... .-..+........+.+.. ....+|++.|..+..
T Consensus 78 ---~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 78 ---ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred ---CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 133455555554 223344444554444433 457788888876543
No 452
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.077 Score=49.04 Aligned_cols=97 Identities=9% Similarity=0.058 Sum_probs=59.3
Q ss_pred cEEEEEeCCCCCCH-----------------HHHHHHHHHHHhcCCceEEEEeecCc--c---------------ccchh
Q 016800 156 YKIIILDEADSMTE-----------------DAQNALRRTMETYSKVTRFFFICNYI--S---------------RIIEP 201 (382)
Q Consensus 156 ~~vliiDe~d~l~~-----------------~~~~~Ll~~le~~~~~~~~Il~~~~~--~---------------~l~~~ 201 (382)
+-+|.||++..+.. ...+.+++++..--....+|++.+.. - .+.+.
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~e 395 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGEE 395 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhcCcc
Confidence 34788999887632 12466777776543333455554411 0 01122
Q ss_pred hhc---ccceEEecCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHhcCCCHHHH
Q 016800 202 LAS---RCAKFRFKPLSEEVMSSRVLHICNEE----GLNLDAEALSTLSSISQGDLRRA 253 (382)
Q Consensus 202 l~s---r~~~i~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~s~gdlr~a 253 (382)
... -+..++.++++.+|...++.+..+.. .+ .+++..+.+.-+|+||++..
T Consensus 396 gfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv-~~Ee~~kql~fLSngNP~l~ 453 (461)
T KOG3928|consen 396 GFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKV-PGEENIKQLYFLSNGNPSLM 453 (461)
T ss_pred chhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhc-CcccchhhhhhhcCCCHHHH
Confidence 222 23368899999999999888866542 22 24667788888899999543
No 453
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.80 E-value=0.018 Score=47.36 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=30.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||.. .++......+.+.+.+. . ..+|+++.+..
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~-~tiiivsh~~~ 149 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL-G-ITVISVGHRPS 149 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh-C-CEEEEEeCChh
Confidence 67899999976 57888888888888876 2 44667776653
No 454
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.80 E-value=0.06 Score=47.77 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPE 110 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~ 110 (382)
-+|++||.|+||||+.-++..+++...
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccC
Confidence 489999999999999999999986543
No 455
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.79 E-value=0.053 Score=43.80 Aligned_cols=120 Identities=13% Similarity=0.182 Sum_probs=63.5
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc---chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 88 ~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
.+..||||||++.+|.+.+. . |. .+...+.. ....+...+..+.. ....+||.|--
T Consensus 5 IAtiGCGKTTva~aL~~LFg-~-wg-----HvQnDnI~~k~~~~f~~~~l~~L~~--------------~~~~vViaDRN 63 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFG-E-WG-----HVQNDNITGKRKPKFIKAVLELLAK--------------DTHPVVIADRN 63 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcC-C-CC-----ccccCCCCCCCHHHHHHHHHHHHhh--------------CCCCEEEEeCC
Confidence 57899999999999998762 1 21 12222211 22223333333311 15679999875
Q ss_pred CCCCHHHHHHHHHHHHhcCC-------ceEEEEee---cC-ccc----cchhhhcccc---eEEecCCCHHHHHHHHHHH
Q 016800 165 DSMTEDAQNALRRTMETYSK-------VTRFFFIC---NY-ISR----IIEPLASRCA---KFRFKPLSEEVMSSRVLHI 226 (382)
Q Consensus 165 d~l~~~~~~~Ll~~le~~~~-------~~~~Il~~---~~-~~~----l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~ 226 (382)
.... .....|+..++...+ ++++|... +. ... ..+.+..|.. .+.........+..++...
T Consensus 64 Nh~~-reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gF 142 (168)
T PF08303_consen 64 NHQK-RERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGF 142 (168)
T ss_pred CchH-HHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHH
Confidence 5553 334556666655433 56666554 11 111 1233444553 5666665666666666555
Q ss_pred HHH
Q 016800 227 CNE 229 (382)
Q Consensus 227 ~~~ 229 (382)
+++
T Consensus 143 i~r 145 (168)
T PF08303_consen 143 IKR 145 (168)
T ss_pred HHh
Confidence 544
No 456
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.79 E-value=0.017 Score=47.30 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..+++||.|+|||++.++++-.+.
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999765543
No 457
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.79 E-value=0.017 Score=52.74 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=34.0
Q ss_pred CCCCCccc--C--cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 57 PKQVKDVA--H--QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 57 p~~~~~~~--g--~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.++++++ | .+.....|...+..+ .++++.|++|+||||++++++..+
T Consensus 121 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 121 IFTLDQYVERGIMTAAQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhh
Confidence 34555664 2 244445565556543 369999999999999999999875
No 458
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.028 Score=53.13 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||++..++...
T Consensus 194 i~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 194 YALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
No 459
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.022 Score=52.68 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++..++..+.
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLL 231 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998763
No 460
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.78 E-value=0.026 Score=45.91 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||+++..+...-
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~~ 24 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGI 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999988653
No 461
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.78 E-value=0.022 Score=47.47 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=34.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCccccchhhhcccceEEe
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYISRIIEPLASRCAKFRF 211 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sr~~~i~~ 211 (382)
+.+++++||.. .++......+.+.+.+... ...+|+++.....+ ..-.|+..++.
T Consensus 116 ~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~--~~adrvi~i~~ 172 (178)
T cd03239 116 PSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF--ENADKLIGVLF 172 (178)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH--hhCCeEEEEEE
Confidence 55799999987 5677777777777765432 24577777765432 23344444443
No 462
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.015 Score=47.26 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=24.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPE 110 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~ 110 (382)
-+-|+|.+|+||||+|.++.+.+...+
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 389999999999999999999996544
No 463
>PRK06696 uridine kinase; Validated
Probab=96.77 E-value=0.0026 Score=55.20 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHc--CCCCc-EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 66 QEEVVRVLTNTLET--ANCPH-MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 66 ~~~~~~~l~~~l~~--~~~~~-lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+.++.|...+.. ...+. +.+.|++|+||||+|+.++..+.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566666666643 22233 89999999999999999999884
No 464
>PHA00350 putative assembly protein
Probab=96.76 E-value=0.0062 Score=56.86 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=37.7
Q ss_pred CcEEEEEeCCCCCCHH------------------------HHHHHHHHHHhcCCceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEADSMTED------------------------AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~------------------------~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
...+|||||++.+.+. ..+.+-.+.+....+.-||++|.++..+.+.++..+.
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~~Id~~iR~lvE 157 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIRKIHSDIRAMIE 157 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHHHhhHHHHHhhh
Confidence 4469999999977321 1223333334556677899999999999999988776
No 465
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.76 E-value=0.015 Score=48.81 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=18.3
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
++|+||.|.|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 466
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.75 E-value=0.018 Score=46.59 Aligned_cols=20 Identities=45% Similarity=0.818 Sum_probs=18.8
Q ss_pred EeCCCCCCHHHHHHHHHHHh
Q 016800 87 FYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 87 l~Gp~G~GKt~la~~la~~l 106 (382)
+.||||+||+|++..+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 57999999999999999987
No 467
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.75 E-value=0.0049 Score=52.21 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=30.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 196 (382)
+.+++++||.. .++......+.+.+.+... ...+|+++....
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 66899999975 5678888888888876532 345667776654
No 468
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.75 E-value=0.0081 Score=57.66 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+||||++..++..+
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHH
Confidence 8999999999999999999876
No 469
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.75 E-value=0.013 Score=56.36 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=66.9
Q ss_pred CcHHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh--
Q 016800 65 HQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-- 141 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 141 (382)
-++...+.+..|....+ ....++.-|+|+|||.++..++..+... ++.+-+. .....+|.+.+..+....
T Consensus 37 lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~------~Lvlv~~-~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 37 LRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS------TLVLVPT-KELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC------EEEEECc-HHHHHHHHHHHHHhcCCccc
Confidence 34444455555555422 2238999999999999999999988422 3333222 223445544333332211
Q ss_pred ---hcCCC-CC-------------------CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 142 ---VGSGQ-RR-------------------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 142 ---~~~~~-~~-------------------~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.+++. .. ..+...++.+||+||+|+++.+....+...+..+.. ++=++++
T Consensus 110 ~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~--~LGLTAT 182 (442)
T COG1061 110 IGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP--RLGLTAT 182 (442)
T ss_pred cceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccc--eeeeccC
Confidence 00000 00 111122678999999999987776666666655433 4555554
No 470
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.74 E-value=0.01 Score=48.78 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=17.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
++++.||+|+|||..+...+-
T Consensus 16 ~~li~aptGsGKT~~~~~~~l 36 (169)
T PF00270_consen 16 NVLISAPTGSGKTLAYILPAL 36 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCccHHHHHHHHH
Confidence 699999999999999875443
No 471
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0075 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
-+-|.||+||||||+.+.++-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998765
No 472
>PRK13949 shikimate kinase; Provisional
Probab=96.72 E-value=0.0019 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.|++|+||||+++.+++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 473
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.72 E-value=0.017 Score=44.21 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|++|+||||+.+++...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999974
No 474
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.72 E-value=0.017 Score=47.37 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 4 v~~vG~~~vGKTsli~~~~~~~ 25 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKGT 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987643
No 475
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.013 Score=48.53 Aligned_cols=42 Identities=12% Similarity=0.297 Sum_probs=30.2
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 196 (382)
+++++++||.. .+.......+.+.+.+... ...+|+++.+..
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 67899999975 5677888888888876532 345666666543
No 476
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.71 E-value=0.0031 Score=58.17 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.7
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 80 ~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
|+....+|+||+|+|||++++.+++.+..
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45456999999999999999999998743
No 477
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.71 E-value=0.0017 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.644 Sum_probs=22.5
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.+++.||||+||||+++.+++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999876
No 478
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.71 E-value=0.02 Score=50.16 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=25.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++++||||+|||+++..++...... +..++.+...
T Consensus 24 ~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~e 58 (237)
T TIGR03877 24 VLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALE 58 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEee
Confidence 8999999999999999887764322 2345555543
No 479
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0017 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++|.|++|+||||+.+.+|+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 469999999999999999999998
No 480
>PRK13948 shikimate kinase; Provisional
Probab=96.71 E-value=0.023 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++|.|.+|+||||+++.+++.+
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 349999999999999999999987
No 481
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0066 Score=51.52 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+.+.|++|+||||+++.+...+.+.
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 7899999999999999999998643
No 482
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.69 E-value=0.028 Score=51.87 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
++....|..+++.+ .++++.|++|+||||+++++...+
T Consensus 165 ~~~~~~L~~~v~~~--~~ili~G~tGsGKTTll~al~~~i 202 (340)
T TIGR03819 165 PGVARLLRAIVAAR--LAFLISGGTGSGKTTLLSALLALV 202 (340)
T ss_pred HHHHHHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHccC
Confidence 34444455455443 379999999999999999998876
No 483
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.68 E-value=0.018 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++++||+|+||||+++++++.+.
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 499999999999999999999874
No 484
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.0089 Score=51.26 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=33.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
+++++|+||.- .+....|..++.++.+.. .+..+|+++.+. .+...+-+|+.
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~ 213 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIA 213 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhhee
Confidence 67899999975 456666777777766432 234577777653 34455556654
No 485
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.67 E-value=0.023 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+||||+|||+++..++....
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999998887764
No 486
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.67 E-value=0.0055 Score=54.75 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||++..++..+.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78889999999999999998774
No 487
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.66 E-value=0.02 Score=64.42 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=70.8
Q ss_pred cccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH------
Q 016800 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK------ 135 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------ 135 (382)
.+...+.....+..++.+.. ...++.|++|+|||++++.+...+...+ ..+.-+- +.......+.+...
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~-~v~ii~G~aGTGKTt~l~~l~~~~~~~G---~~V~~lA-PTgrAA~~L~e~~g~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTK-RFIIINGFGGTGSTEIAQLLLHLASEQG---YEIQIIT-AGSLSAQELRQKIPRLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCC-CeEEEEECCCCCHHHHHHHHHHHHHhcC---CeEEEEe-CCHHHHHHHHHHhcchhhhH
Confidence 33445666677777666643 2489999999999999999988764332 3344333 22222222221111
Q ss_pred -HHHHhhhcCCC-----CC--CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 136 -TFAAVAVGSGQ-----RR--GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 136 -~~~~~~~~~~~-----~~--~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.+......... .+ ......+..+|||||+..++......|++..+.. ++++||+++
T Consensus 502 ~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~--garvVlvGD 565 (1960)
T TIGR02760 502 ITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQH--NSKLILLND 565 (1960)
T ss_pred HHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhc--CCEEEEEcC
Confidence 00000000000 00 0001125679999999999988888888776543 456787775
No 488
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.66 E-value=0.038 Score=49.12 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.++|.||+|+|||+++..++..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~ 100 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4599999999999999999988864
No 489
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.65 E-value=0.027 Score=45.68 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998653
No 490
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.65 E-value=0.013 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||+++..+...-
T Consensus 8 kivvvG~~~vGKTsli~~l~~~~ 30 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADNT 30 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998654
No 491
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.65 E-value=0.026 Score=53.53 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=22.5
Q ss_pred Cc-EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PH-MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~-lll~Gp~G~GKt~la~~la~~l~ 107 (382)
|. +++.|++|+||||++..++..+.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44 89999999999999999999873
No 492
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.64 E-value=0.025 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.++|.||.|.|||++.+.++-
T Consensus 33 ~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999887
No 493
>PRK06217 hypothetical protein; Validated
Probab=96.64 E-value=0.0023 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999874
No 494
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.64 E-value=0.021 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||+++..+...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999865
No 495
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.62 E-value=0.32 Score=44.66 Aligned_cols=37 Identities=32% Similarity=0.418 Sum_probs=27.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+-|.|+||+||||++..+...+...+ ....++.+++.
T Consensus 59 igi~G~~GaGKSTl~~~l~~~l~~~g-~~v~vi~~Dp~ 95 (332)
T PRK09435 59 IGITGVPGVGKSTFIEALGMHLIEQG-HKVAVLAVDPS 95 (332)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEeCCC
Confidence 88999999999999999998875332 23344555544
No 496
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.62 E-value=0.033 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999987654
No 497
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.62 E-value=0.018 Score=47.30 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++++.+...
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
No 498
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.62 E-value=0.036 Score=45.19 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
No 499
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.62 E-value=0.0026 Score=51.52 Aligned_cols=22 Identities=36% Similarity=0.547 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++++|++|+|||++++.+++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.62 E-value=0.015 Score=50.53 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|+||+|||+++..++....
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~ 41 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGL 41 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999987653
Done!