Query 016800
Match_columns 382
No_of_seqs 330 out of 3318
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 03:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 100.0 1.5E-45 5.3E-50 340.7 34.4 319 47-375 11-335 (340)
2 1sxj_D Activator 1 41 kDa subu 100.0 9E-44 3.1E-48 330.9 30.1 324 46-369 22-352 (353)
3 2chq_A Replication factor C sm 100.0 1.7E-43 5.9E-48 324.4 29.1 313 47-370 3-316 (319)
4 1iqp_A RFCS; clamp loader, ext 100.0 6.7E-43 2.3E-47 321.5 33.2 316 46-372 10-326 (327)
5 3u61_B DNA polymerase accessor 100.0 4.9E-42 1.7E-46 315.4 32.2 302 45-371 10-321 (324)
6 1sxj_B Activator 1 37 kDa subu 100.0 1.5E-41 5.2E-46 311.9 33.3 315 46-372 6-321 (323)
7 1sxj_E Activator 1 40 kDa subu 100.0 5.5E-42 1.9E-46 319.0 29.1 320 49-371 2-353 (354)
8 1jr3_A DNA polymerase III subu 100.0 1.2E-39 4.2E-44 305.3 37.1 314 47-370 2-359 (373)
9 3pvs_A Replication-associated 100.0 5.6E-35 1.9E-39 277.1 30.8 299 49-368 14-341 (447)
10 2gno_A DNA polymerase III, gam 100.0 1.1E-35 3.8E-40 268.2 24.1 280 65-369 1-296 (305)
11 1a5t_A Delta prime, HOLB; zinc 100.0 7.3E-34 2.5E-38 261.3 24.2 283 66-370 7-322 (334)
12 1jr3_D DNA polymerase III, del 100.0 4.4E-33 1.5E-37 257.6 18.3 281 73-369 9-333 (343)
13 2chg_A Replication factor C sm 100.0 1.1E-29 3.9E-34 220.0 26.1 222 47-278 3-224 (226)
14 1njg_A DNA polymerase III subu 100.0 1.5E-28 5E-33 215.9 24.4 223 46-278 8-249 (250)
15 1sxj_A Activator 1 95 kDa subu 100.0 4.1E-27 1.4E-31 228.4 21.8 240 46-295 24-292 (516)
16 3pfi_A Holliday junction ATP-d 99.9 4.9E-25 1.7E-29 203.3 22.2 210 46-277 14-251 (338)
17 3uk6_A RUVB-like 2; hexameric 99.9 2.3E-24 8E-29 201.1 22.7 223 47-279 29-329 (368)
18 1hqc_A RUVB; extended AAA-ATPa 99.9 1.1E-23 3.8E-28 193.0 22.4 206 51-277 2-235 (324)
19 2c9o_A RUVB-like 1; hexameric 99.9 2.4E-23 8.1E-28 199.1 21.8 123 157-280 297-437 (456)
20 1in4_A RUVB, holliday junction 99.9 9E-23 3.1E-27 187.4 24.3 216 41-278 5-248 (334)
21 3bos_A Putative DNA replicatio 99.9 2.4E-23 8.1E-28 182.4 15.1 212 46-278 12-241 (242)
22 1fnn_A CDC6P, cell division co 99.9 5.1E-21 1.7E-25 179.7 27.3 230 44-278 3-272 (389)
23 2v1u_A Cell division control p 99.9 3.4E-20 1.2E-24 173.8 28.7 244 44-302 5-295 (387)
24 3vfd_A Spastin; ATPase, microt 99.9 2E-20 6.9E-25 175.4 23.3 197 49-261 103-329 (389)
25 3b9p_A CG5977-PA, isoform A; A 99.9 4.7E-20 1.6E-24 166.7 24.4 192 50-261 10-237 (297)
26 2qby_B CDC6 homolog 3, cell di 99.9 1.1E-19 3.6E-24 170.4 27.0 294 44-347 6-334 (384)
27 3eie_A Vacuolar protein sortin 99.9 1.8E-20 6.2E-25 171.2 20.1 197 49-261 6-232 (322)
28 3syl_A Protein CBBX; photosynt 99.8 3E-20 1E-24 169.0 17.6 188 62-262 32-260 (309)
29 2qp9_X Vacuolar protein sortin 99.8 8.5E-20 2.9E-24 168.7 20.1 198 49-262 39-266 (355)
30 3d8b_A Fidgetin-like protein 1 99.8 1.7E-19 6E-24 166.9 21.7 195 51-261 74-299 (357)
31 2qby_A CDC6 homolog 1, cell di 99.8 9.9E-19 3.4E-23 163.7 26.2 220 44-278 6-270 (386)
32 2z4s_A Chromosomal replication 99.8 1.3E-19 4.4E-24 172.1 20.0 213 55-281 98-333 (440)
33 1ofh_A ATP-dependent HSL prote 99.8 1.5E-19 5.2E-24 164.3 18.7 204 61-279 15-298 (310)
34 3pxg_A Negative regulator of g 99.8 6.9E-20 2.4E-24 175.4 17.0 197 46-263 165-384 (468)
35 1lv7_A FTSH; alpha/beta domain 99.8 4.6E-19 1.6E-23 156.7 19.8 206 50-277 1-249 (257)
36 3h4m_A Proteasome-activating n 99.8 4.4E-19 1.5E-23 159.4 19.8 205 56-277 12-255 (285)
37 1l8q_A Chromosomal replication 99.8 2.1E-19 7.2E-24 164.5 17.7 187 58-263 8-214 (324)
38 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2E-18 6.8E-23 153.1 23.5 205 57-277 2-246 (262)
39 4b4t_J 26S protease regulatory 99.8 1.8E-18 6.2E-23 159.0 22.6 203 58-277 145-386 (405)
40 3te6_A Regulatory protein SIR3 99.8 9.8E-19 3.4E-23 157.2 20.3 200 63-264 22-286 (318)
41 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.9E-18 6.4E-23 157.6 21.5 188 55-261 6-227 (322)
42 2r44_A Uncharacterized protein 99.8 1.9E-19 6.5E-24 165.3 14.6 214 49-277 15-294 (331)
43 2zan_A Vacuolar protein sortin 99.8 1.1E-18 3.8E-23 165.9 19.9 194 50-262 123-350 (444)
44 4b4t_L 26S protease subunit RP 99.8 1.4E-17 4.8E-22 155.6 22.4 203 58-277 178-419 (437)
45 4b4t_M 26S protease regulatory 99.8 4.5E-18 1.5E-22 158.8 19.0 203 58-278 178-420 (434)
46 4fcw_A Chaperone protein CLPB; 99.8 1.5E-18 5.2E-23 157.8 15.3 189 61-262 17-276 (311)
47 1g8p_A Magnesium-chelatase 38 99.8 4.6E-18 1.6E-22 157.2 18.8 221 53-277 16-319 (350)
48 4b4t_H 26S protease regulatory 99.8 1.6E-17 5.3E-22 154.7 21.9 204 56-277 203-447 (467)
49 4b4t_I 26S protease regulatory 99.8 3.7E-17 1.3E-21 150.7 21.6 202 58-277 179-420 (437)
50 4b4t_K 26S protease regulatory 99.8 2.8E-17 9.6E-22 153.3 20.4 202 58-277 169-411 (428)
51 1jbk_A CLPB protein; beta barr 99.8 2.9E-18 9.8E-23 144.4 12.3 165 48-223 9-194 (195)
52 2ce7_A Cell division protein F 99.8 4E-17 1.4E-21 154.9 21.2 200 57-278 12-254 (476)
53 2bjv_A PSP operon transcriptio 99.8 2.1E-17 7E-22 146.8 18.1 213 59-275 4-252 (265)
54 1qvr_A CLPB protein; coiled co 99.8 7.8E-18 2.7E-22 172.7 16.6 206 48-264 157-392 (854)
55 3pxi_A Negative regulator of g 99.7 5.5E-17 1.9E-21 164.7 20.3 198 46-263 165-384 (758)
56 3cf0_A Transitional endoplasmi 99.7 8.7E-17 3E-21 145.3 18.5 187 55-262 9-234 (301)
57 3m6a_A ATP-dependent protease 99.7 4.9E-18 1.7E-22 165.2 10.9 213 61-280 81-341 (543)
58 1r6b_X CLPA protein; AAA+, N-t 99.7 3.9E-17 1.3E-21 166.0 17.5 220 46-277 171-430 (758)
59 1ojl_A Transcriptional regulat 99.7 6.9E-17 2.4E-21 145.9 16.0 210 61-277 2-249 (304)
60 2p65_A Hypothetical protein PF 99.7 1.1E-17 3.7E-22 140.1 10.0 159 46-215 7-187 (187)
61 3hu3_A Transitional endoplasmi 99.7 1.2E-16 4.2E-21 152.8 17.6 195 53-264 196-422 (489)
62 2r62_A Cell division protease 99.7 1.3E-18 4.3E-23 154.9 2.2 205 54-279 4-252 (268)
63 1d2n_A N-ethylmaleimide-sensit 99.7 1.2E-16 4E-21 142.5 13.3 181 61-262 33-247 (272)
64 1um8_A ATP-dependent CLP prote 99.7 2.2E-16 7.5E-21 147.4 15.7 205 61-277 21-362 (376)
65 3pxi_A Negative regulator of g 99.7 1.2E-16 4.1E-21 162.2 14.3 185 61-261 491-721 (758)
66 2dhr_A FTSH; AAA+ protein, hex 99.7 5.1E-16 1.8E-20 148.1 17.0 208 51-277 22-268 (499)
67 1ixz_A ATP-dependent metallopr 99.7 2.2E-15 7.4E-20 132.8 18.9 206 54-277 9-253 (254)
68 1r6b_X CLPA protein; AAA+, N-t 99.7 5.4E-16 1.9E-20 157.6 16.6 183 61-262 458-713 (758)
69 1w5s_A Origin recognition comp 99.7 8.7E-15 3E-19 138.2 23.5 231 44-277 8-290 (412)
70 1iy2_A ATP-dependent metallopr 99.6 9.3E-15 3.2E-19 130.5 19.5 204 56-277 35-277 (278)
71 1qvr_A CLPB protein; coiled co 99.6 2.7E-16 9.3E-21 161.3 10.8 189 61-262 558-817 (854)
72 3k1j_A LON protease, ATP-depen 99.6 3.5E-15 1.2E-19 147.3 18.1 224 50-278 30-373 (604)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 4.8E-14 1.7E-18 134.7 16.9 207 61-278 22-283 (500)
74 3hws_A ATP-dependent CLP prote 99.6 8.1E-15 2.8E-19 136.1 11.2 190 62-263 16-321 (363)
75 3cf2_A TER ATPase, transitiona 99.5 4.4E-14 1.5E-18 141.2 14.8 175 58-249 201-406 (806)
76 3t15_A Ribulose bisphosphate c 99.5 7.7E-13 2.6E-17 118.8 21.0 148 85-251 39-221 (293)
77 2x8a_A Nuclear valosin-contain 99.5 1.2E-12 4.2E-17 116.1 21.2 171 58-244 7-210 (274)
78 3n70_A Transport activator; si 99.5 7.8E-14 2.7E-18 111.7 11.6 132 62-214 2-144 (145)
79 1g41_A Heat shock protein HSLU 99.5 3.6E-13 1.2E-17 126.0 17.8 124 156-279 251-432 (444)
80 2qen_A Walker-type ATPase; unk 99.5 5.3E-12 1.8E-16 116.2 21.0 189 59-258 10-247 (350)
81 3cf2_A TER ATPase, transitiona 99.5 1.2E-13 4.1E-18 138.1 9.9 179 58-257 474-694 (806)
82 3f9v_A Minichromosome maintena 99.4 5.5E-14 1.9E-18 137.9 6.5 209 60-277 294-584 (595)
83 3co5_A Putative two-component 99.4 1.6E-13 5.4E-18 109.6 7.9 128 62-214 5-142 (143)
84 1ypw_A Transitional endoplasmi 99.4 2.5E-12 8.7E-17 130.5 13.1 184 54-254 197-411 (806)
85 3dzd_A Transcriptional regulat 99.4 4.8E-12 1.6E-16 117.1 12.7 199 61-264 129-361 (368)
86 1ny5_A Transcriptional regulat 99.4 1.2E-11 4.1E-16 115.3 15.5 211 60-274 136-381 (387)
87 3ec2_A DNA replication protein 99.3 1.7E-12 5.8E-17 107.9 7.3 134 53-197 2-145 (180)
88 2fna_A Conserved hypothetical 99.3 7.7E-11 2.6E-15 108.6 17.7 189 59-260 11-253 (357)
89 1ypw_A Transitional endoplasmi 99.3 8.8E-14 3E-18 141.2 -4.0 153 57-229 473-663 (806)
90 1u0j_A DNA replication protein 99.2 4.9E-11 1.7E-15 103.6 11.0 134 71-235 91-258 (267)
91 3upu_A ATP-dependent DNA helic 99.1 1.5E-10 5.2E-15 110.5 10.6 144 46-196 9-166 (459)
92 2w58_A DNAI, primosome compone 99.1 1.6E-10 5.6E-15 97.7 8.3 124 51-195 15-159 (202)
93 2kjq_A DNAA-related protein; s 99.1 2.3E-10 7.9E-15 91.6 8.3 112 66-207 24-140 (149)
94 1tue_A Replication protein E1; 99.1 2.6E-10 8.8E-15 94.6 7.6 134 68-229 43-207 (212)
95 3f8t_A Predicted ATPase involv 99.0 6.7E-09 2.3E-13 96.7 16.9 170 63-245 215-426 (506)
96 2qgz_A Helicase loader, putati 99.0 3.5E-10 1.2E-14 102.0 6.6 130 52-195 115-258 (308)
97 4akg_A Glutathione S-transfera 98.9 7.4E-09 2.5E-13 115.4 15.3 151 72-229 1259-1433(2695)
98 1z6t_A APAF-1, apoptotic prote 98.7 3.4E-07 1.2E-11 90.2 16.9 188 56-257 119-328 (591)
99 4akg_A Glutathione S-transfera 98.7 1.2E-06 4.1E-11 98.0 22.5 169 68-262 633-838 (2695)
100 3vkg_A Dynein heavy chain, cyt 98.6 3.1E-07 1.1E-11 103.3 14.2 150 72-228 1296-1470(3245)
101 2a5y_B CED-4; apoptosis; HET: 98.5 1.4E-06 4.8E-11 85.0 14.3 180 64-254 131-334 (549)
102 1ye8_A Protein THEP1, hypothet 98.5 9E-07 3.1E-11 72.8 10.1 68 155-224 99-173 (178)
103 3sfz_A APAF-1, apoptotic pepti 98.5 9.5E-06 3.2E-10 86.8 20.8 187 56-255 119-326 (1249)
104 2r2a_A Uncharacterized protein 98.4 3.7E-07 1.3E-11 76.4 6.2 60 155-214 87-153 (199)
105 3vkg_A Dynein heavy chain, cyt 98.3 7.4E-05 2.5E-09 84.6 22.6 171 67-263 591-799 (3245)
106 1vt4_I APAF-1 related killer D 98.2 3.2E-05 1.1E-09 79.0 16.9 155 63-227 130-311 (1221)
107 2orw_A Thymidine kinase; TMTK, 98.2 1.4E-06 4.9E-11 72.0 5.1 55 155-212 76-137 (184)
108 3e1s_A Exodeoxyribonuclease V, 98.0 1.4E-05 4.7E-10 78.0 8.5 120 66-196 191-317 (574)
109 3ctd_A Putative ATPase, AAA fa 98.0 4.4E-05 1.5E-09 62.5 9.5 89 278-368 32-121 (213)
110 2b8t_A Thymidine kinase; deoxy 97.9 4.4E-05 1.5E-09 64.8 9.2 93 85-193 15-124 (223)
111 2vhj_A Ntpase P4, P4; non- hyd 97.9 4.3E-05 1.5E-09 68.0 9.1 21 85-105 126-146 (331)
112 1g5t_A COB(I)alamin adenosyltr 97.8 7.3E-05 2.5E-09 61.7 9.1 108 83-207 29-172 (196)
113 1w36_D RECD, exodeoxyribonucle 97.8 3.6E-05 1.2E-09 75.7 8.6 108 84-195 166-299 (608)
114 1ly1_A Polynucleotide kinase; 97.7 0.00046 1.6E-08 56.3 11.8 20 85-104 5-24 (181)
115 2r8r_A Sensor protein; KDPD, P 97.7 0.00034 1.2E-08 59.0 10.8 132 85-223 9-173 (228)
116 2r9g_A AAA ATPase, central reg 97.7 0.00037 1.3E-08 56.6 10.2 88 278-368 11-99 (204)
117 2fz4_A DNA repair protein RAD2 97.7 0.00023 7.9E-09 61.2 9.8 117 65-194 94-228 (237)
118 3bge_A Predicted ATPase; struc 97.6 0.00014 4.8E-09 58.9 7.4 87 280-368 6-93 (201)
119 3cmu_A Protein RECA, recombina 97.6 0.00019 6.3E-09 78.4 10.4 26 83-108 1428-1453(2050)
120 1jql_B DNA polymerase III, del 97.6 0.00015 5.1E-09 56.9 7.1 122 75-211 11-139 (140)
121 2iut_A DNA translocase FTSK; n 97.6 0.0029 9.8E-08 60.9 17.1 70 155-224 343-420 (574)
122 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.001 3.5E-08 58.0 12.3 25 82-106 4-28 (260)
123 3lw7_A Adenylate kinase relate 97.5 0.00053 1.8E-08 55.5 9.4 22 84-106 3-24 (179)
124 3dl0_A Adenylate kinase; phosp 97.4 0.0052 1.8E-07 51.7 15.2 23 84-106 2-24 (216)
125 3kb2_A SPBC2 prophage-derived 97.4 0.00066 2.3E-08 54.8 8.5 23 84-106 3-25 (173)
126 1t6n_A Probable ATP-dependent 97.3 0.003 1E-07 53.3 12.6 42 154-195 157-200 (220)
127 2i3b_A HCR-ntpase, human cance 97.3 0.0007 2.4E-08 55.9 8.3 68 155-224 105-181 (189)
128 1w4r_A Thymidine kinase; type 97.3 0.00073 2.5E-08 55.6 8.2 98 85-192 23-124 (195)
129 1xx6_A Thymidine kinase; NESG, 97.3 0.00039 1.3E-08 57.5 6.3 23 85-107 11-33 (191)
130 3tlx_A Adenylate kinase 2; str 97.3 0.0093 3.2E-07 51.2 15.2 23 84-106 31-53 (243)
131 3fb4_A Adenylate kinase; psych 97.3 0.0056 1.9E-07 51.4 13.5 22 85-106 3-24 (216)
132 3zvl_A Bifunctional polynucleo 97.3 0.0011 3.9E-08 61.9 9.8 22 85-106 261-282 (416)
133 2j9r_A Thymidine kinase; TK1, 97.2 0.00035 1.2E-08 58.5 5.5 101 85-193 31-136 (214)
134 2vli_A Antibiotic resistance p 97.2 0.0026 8.7E-08 51.9 10.4 23 84-106 7-29 (183)
135 3llm_A ATP-dependent RNA helic 97.2 0.004 1.4E-07 53.2 12.0 20 84-103 78-97 (235)
136 1nrj_B SR-beta, signal recogni 97.2 0.0019 6.6E-08 54.3 9.9 107 80-198 10-133 (218)
137 1ltq_A Polynucleotide kinase; 97.2 0.0067 2.3E-07 53.8 13.8 22 85-106 5-26 (301)
138 3dm5_A SRP54, signal recogniti 97.1 0.0083 2.8E-07 56.0 14.2 25 85-109 103-127 (443)
139 2ius_A DNA translocase FTSK; n 97.1 0.0055 1.9E-07 58.4 13.1 70 155-224 297-374 (512)
140 2cvh_A DNA repair and recombin 97.1 0.0086 3E-07 50.2 13.1 33 85-123 23-55 (220)
141 3jvv_A Twitching mobility prot 97.1 0.0044 1.5E-07 56.4 11.4 46 57-107 103-148 (356)
142 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0025 8.5E-08 54.1 9.4 23 84-106 25-47 (235)
143 1vec_A ATP-dependent RNA helic 97.0 0.003 1E-07 52.6 9.4 39 155-193 146-185 (206)
144 1u94_A RECA protein, recombina 97.0 0.0021 7.2E-08 58.6 8.9 34 85-121 66-99 (356)
145 3hr8_A Protein RECA; alpha and 97.0 0.0033 1.1E-07 57.1 10.1 36 72-107 48-86 (356)
146 1v5w_A DMC1, meiotic recombina 97.0 0.0045 1.5E-07 56.2 11.0 39 85-123 125-166 (343)
147 1svm_A Large T antigen; AAA+ f 97.0 0.0015 5E-08 60.0 7.5 23 84-106 171-193 (377)
148 3trf_A Shikimate kinase, SK; a 97.0 0.00055 1.9E-08 56.2 4.2 24 83-106 6-29 (185)
149 2p5t_B PEZT; postsegregational 97.0 0.0085 2.9E-07 51.8 12.0 22 85-106 35-56 (253)
150 3cmu_A Protein RECA, recombina 97.0 0.0027 9.3E-08 69.5 10.4 26 84-109 1083-1108(2050)
151 3umf_A Adenylate kinase; rossm 97.0 0.0073 2.5E-07 50.8 11.0 22 85-106 32-53 (217)
152 3h1t_A Type I site-specific re 96.9 0.0014 4.9E-08 64.3 7.6 128 66-195 183-342 (590)
153 1qhx_A CPT, protein (chloramph 96.9 0.00077 2.6E-08 54.8 4.8 23 84-106 5-27 (178)
154 3fmo_B ATP-dependent RNA helic 96.9 0.0075 2.6E-07 53.6 11.6 49 58-106 92-156 (300)
155 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00063 2.2E-08 61.5 4.5 39 69-107 11-49 (359)
156 1qde_A EIF4A, translation init 96.9 0.0036 1.2E-07 52.9 9.1 40 155-194 155-195 (224)
157 2zr9_A Protein RECA, recombina 96.9 0.0052 1.8E-07 55.9 10.5 23 85-107 64-86 (349)
158 1xp8_A RECA protein, recombina 96.9 0.007 2.4E-07 55.3 11.3 23 85-107 77-99 (366)
159 3kl4_A SRP54, signal recogniti 96.8 0.006 2.1E-07 56.9 10.3 23 85-107 100-122 (433)
160 3pey_A ATP-dependent RNA helic 96.8 0.0055 1.9E-07 56.4 10.1 113 80-193 42-185 (395)
161 2orv_A Thymidine kinase; TP4A 96.8 0.0028 9.5E-08 53.5 7.1 101 85-193 22-124 (234)
162 3b6e_A Interferon-induced heli 96.8 0.002 7E-08 53.9 6.4 39 65-106 34-72 (216)
163 3sr0_A Adenylate kinase; phosp 96.8 0.0067 2.3E-07 50.7 9.4 22 85-106 3-24 (206)
164 3vaa_A Shikimate kinase, SK; s 96.8 0.0009 3.1E-08 55.7 4.0 25 82-106 25-49 (199)
165 2gxq_A Heat resistant RNA depe 96.8 0.011 3.7E-07 49.1 10.8 40 155-194 144-184 (207)
166 3iij_A Coilin-interacting nucl 96.8 0.00099 3.4E-08 54.4 4.1 24 83-106 12-35 (180)
167 1zuh_A Shikimate kinase; alpha 96.8 0.0011 3.6E-08 53.5 4.1 24 83-106 8-31 (168)
168 3vkw_A Replicase large subunit 96.7 0.0023 7.9E-08 59.6 6.8 97 85-195 164-270 (446)
169 2i1q_A DNA repair and recombin 96.7 0.0055 1.9E-07 55.1 9.1 22 85-106 101-122 (322)
170 4a74_A DNA repair and recombin 96.7 0.013 4.3E-07 49.6 10.8 23 85-107 28-50 (231)
171 1via_A Shikimate kinase; struc 96.7 0.0011 3.7E-08 53.9 3.8 24 83-106 5-28 (175)
172 2dr3_A UPF0273 protein PH0284; 96.7 0.014 4.9E-07 49.8 10.9 23 85-107 26-48 (247)
173 1kao_A RAP2A; GTP-binding prot 96.6 0.074 2.5E-06 41.8 14.3 22 85-106 6-27 (167)
174 2iyv_A Shikimate kinase, SK; t 96.6 0.0015 5.2E-08 53.4 4.2 23 84-106 4-26 (184)
175 1rif_A DAR protein, DNA helica 96.6 0.011 3.6E-07 52.1 9.8 120 64-192 113-259 (282)
176 1kag_A SKI, shikimate kinase I 96.6 0.0013 4.3E-08 53.3 3.5 23 84-106 6-28 (173)
177 3fht_A ATP-dependent RNA helic 96.6 0.019 6.4E-07 53.2 12.0 25 82-106 64-89 (412)
178 4b3f_X DNA-binding protein smu 96.6 0.0034 1.2E-07 62.3 7.2 42 65-108 190-231 (646)
179 1kht_A Adenylate kinase; phosp 96.6 0.0013 4.5E-08 54.0 3.6 24 84-107 5-28 (192)
180 3fmp_B ATP-dependent RNA helic 96.6 0.012 3.9E-07 56.1 10.6 41 155-195 235-277 (479)
181 3bor_A Human initiation factor 96.6 0.0054 1.8E-07 52.4 7.5 40 155-194 173-213 (237)
182 4eun_A Thermoresistant glucoki 96.6 0.0016 5.4E-08 54.2 4.0 26 81-106 28-53 (200)
183 2ze6_A Isopentenyl transferase 96.5 0.002 6.8E-08 55.9 4.6 23 84-106 3-25 (253)
184 1y63_A LMAJ004144AAA protein; 96.5 0.0016 5.5E-08 53.4 3.8 25 82-106 10-34 (184)
185 1nks_A Adenylate kinase; therm 96.5 0.0013 4.5E-08 54.1 3.2 24 84-107 3-26 (194)
186 1gvn_B Zeta; postsegregational 96.5 0.0033 1.1E-07 55.6 5.9 22 85-106 36-57 (287)
187 3lda_A DNA repair protein RAD5 96.5 0.025 8.6E-07 52.3 12.0 39 85-123 181-222 (400)
188 1aky_A Adenylate kinase; ATP:A 96.5 0.0018 6.3E-08 54.7 4.1 24 83-106 5-28 (220)
189 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.013 4.3E-07 52.9 9.7 36 69-106 160-195 (330)
190 1vma_A Cell division protein F 96.5 0.013 4.5E-07 52.1 9.6 23 85-107 107-129 (306)
191 3ber_A Probable ATP-dependent 96.5 0.008 2.7E-07 51.8 8.0 39 155-193 186-225 (249)
192 1kgd_A CASK, peripheral plasma 96.4 0.002 6.8E-08 52.7 3.8 22 85-106 8-29 (180)
193 1e6c_A Shikimate kinase; phosp 96.4 0.0021 7.3E-08 51.9 4.0 23 84-106 4-26 (173)
194 2rhm_A Putative kinase; P-loop 96.4 0.0016 5.3E-08 53.7 3.2 22 85-106 8-29 (193)
195 1hv8_A Putative ATP-dependent 96.4 0.015 5.3E-07 52.7 10.2 36 69-106 33-68 (367)
196 3fho_A ATP-dependent RNA helic 96.4 0.0085 2.9E-07 57.5 8.7 41 154-194 258-300 (508)
197 3cm0_A Adenylate kinase; ATP-b 96.4 0.002 6.8E-08 52.8 3.6 23 84-106 6-28 (186)
198 3t61_A Gluconokinase; PSI-biol 96.4 0.0019 6.6E-08 53.7 3.5 23 84-106 20-42 (202)
199 1q0u_A Bstdead; DEAD protein, 96.4 0.013 4.3E-07 49.3 8.7 44 155-198 150-195 (219)
200 1zak_A Adenylate kinase; ATP:A 96.4 0.0022 7.4E-08 54.4 3.8 26 82-107 5-30 (222)
201 2qor_A Guanylate kinase; phosp 96.4 0.0025 8.4E-08 53.2 4.1 23 84-106 14-36 (204)
202 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0086 2.9E-07 48.2 7.3 23 84-106 9-31 (177)
203 2oxc_A Probable ATP-dependent 96.4 0.0094 3.2E-07 50.6 7.8 23 84-106 63-86 (230)
204 1xti_A Probable ATP-dependent 96.4 0.02 6.8E-07 52.6 10.6 39 154-192 151-191 (391)
205 3lxw_A GTPase IMAP family memb 96.4 0.21 7E-06 42.8 16.3 22 84-105 23-44 (247)
206 2c95_A Adenylate kinase 1; tra 96.4 0.0023 7.8E-08 52.8 3.7 24 83-106 10-33 (196)
207 4gp7_A Metallophosphoesterase; 96.4 0.07 2.4E-06 42.9 12.6 17 85-101 12-28 (171)
208 3uie_A Adenylyl-sulfate kinase 96.3 0.0032 1.1E-07 52.3 4.5 24 84-107 27-50 (200)
209 2cdn_A Adenylate kinase; phosp 96.3 0.0024 8.1E-08 53.1 3.6 23 84-106 22-44 (201)
210 3lxx_A GTPase IMAP family memb 96.3 0.04 1.4E-06 46.9 11.5 23 84-106 31-53 (239)
211 1ak2_A Adenylate kinase isoenz 96.3 0.003 1E-07 53.9 4.2 24 83-106 17-40 (233)
212 2plr_A DTMP kinase, probable t 96.3 0.0025 8.4E-08 53.3 3.6 24 84-107 6-29 (213)
213 3be4_A Adenylate kinase; malar 96.3 0.0022 7.4E-08 54.2 3.2 24 83-106 6-29 (217)
214 4dkx_A RAS-related protein RAB 96.3 0.017 6E-07 48.5 8.9 23 85-107 16-38 (216)
215 3cmw_A Protein RECA, recombina 96.3 0.011 3.7E-07 64.1 9.1 23 85-107 735-757 (1706)
216 1tev_A UMP-CMP kinase; ploop, 96.3 0.0026 8.9E-08 52.4 3.6 22 85-106 6-27 (196)
217 3dz8_A RAS-related protein RAB 96.3 0.012 4.2E-07 48.1 7.7 23 85-107 26-48 (191)
218 1rz3_A Hypothetical protein rb 96.3 0.006 2.1E-07 50.7 5.8 40 67-106 4-46 (201)
219 1ex7_A Guanylate kinase; subst 96.2 0.0028 9.5E-08 52.0 3.5 22 85-106 4-25 (186)
220 3cmw_A Protein RECA, recombina 96.2 0.013 4.5E-07 63.4 9.5 35 85-122 37-71 (1706)
221 1qf9_A UMP/CMP kinase, protein 96.2 0.0031 1.1E-07 51.8 3.8 22 85-106 9-30 (194)
222 2ce2_X GTPase HRAS; signaling 96.2 0.03 1E-06 44.1 9.7 24 84-107 5-28 (166)
223 3iuy_A Probable ATP-dependent 96.2 0.015 5E-07 49.2 8.2 39 155-193 167-206 (228)
224 1zd8_A GTP:AMP phosphotransfer 96.2 0.0026 8.9E-08 54.0 3.4 24 83-106 8-31 (227)
225 2jaq_A Deoxyguanosine kinase; 96.2 0.0029 9.7E-08 52.6 3.6 23 84-106 2-24 (205)
226 2pt5_A Shikimate kinase, SK; a 96.2 0.0031 1E-07 50.7 3.6 23 84-106 2-24 (168)
227 1s2m_A Putative ATP-dependent 96.2 0.044 1.5E-06 50.5 12.0 23 84-106 60-82 (400)
228 1knq_A Gluconate kinase; ALFA/ 96.2 0.003 1E-07 51.1 3.5 23 84-106 10-32 (175)
229 1z0j_A RAB-22, RAS-related pro 96.2 0.0094 3.2E-07 47.5 6.5 23 85-107 9-31 (170)
230 3c8u_A Fructokinase; YP_612366 96.2 0.0047 1.6E-07 51.7 4.8 23 85-107 25-47 (208)
231 3dkp_A Probable ATP-dependent 96.2 0.046 1.6E-06 46.7 11.2 23 84-106 68-91 (245)
232 1u8z_A RAS-related protein RAL 96.2 0.018 6.1E-07 45.6 8.1 23 84-106 6-28 (168)
233 2bwj_A Adenylate kinase 5; pho 96.2 0.0027 9.3E-08 52.5 3.2 23 84-106 14-36 (199)
234 2wsm_A Hydrogenase expression/ 96.2 0.0032 1.1E-07 53.1 3.6 44 63-106 11-54 (221)
235 3tau_A Guanylate kinase, GMP k 96.2 0.0034 1.2E-07 52.6 3.7 23 84-106 10-32 (208)
236 2yvu_A Probable adenylyl-sulfa 96.1 0.0025 8.5E-08 52.3 2.8 23 85-107 16-38 (186)
237 1zp6_A Hypothetical protein AT 96.1 0.0025 8.6E-08 52.4 2.8 22 84-105 11-32 (191)
238 1ukz_A Uridylate kinase; trans 96.1 0.0032 1.1E-07 52.3 3.5 23 84-106 17-39 (203)
239 3rlf_A Maltose/maltodextrin im 96.1 0.016 5.4E-07 53.1 8.2 42 155-196 151-195 (381)
240 4gzl_A RAS-related C3 botulinu 96.1 0.0021 7.2E-08 53.6 2.2 43 65-107 13-55 (204)
241 2px0_A Flagellar biosynthesis 96.1 0.025 8.4E-07 50.1 9.2 23 85-107 108-130 (296)
242 2z0h_A DTMP kinase, thymidylat 96.1 0.0037 1.3E-07 51.6 3.5 22 85-106 3-24 (197)
243 3bh0_A DNAB-like replicative h 96.1 0.019 6.4E-07 51.4 8.4 35 85-122 71-105 (315)
244 2pbr_A DTMP kinase, thymidylat 96.1 0.0038 1.3E-07 51.3 3.5 22 85-106 3-24 (195)
245 1odf_A YGR205W, hypothetical 3 96.0 0.0088 3E-07 52.8 6.0 23 85-107 34-56 (290)
246 3nh6_A ATP-binding cassette SU 96.0 0.018 6E-07 51.2 8.0 42 155-196 208-250 (306)
247 2wwf_A Thymidilate kinase, put 96.0 0.0033 1.1E-07 52.6 3.2 25 84-108 12-36 (212)
248 2xb4_A Adenylate kinase; ATP-b 96.0 0.0039 1.3E-07 52.8 3.6 22 85-106 3-24 (223)
249 1n0w_A DNA repair protein RAD5 96.0 0.015 5.1E-07 49.6 7.3 39 85-123 27-68 (243)
250 1z0f_A RAB14, member RAS oncog 96.0 0.018 6.2E-07 46.2 7.4 24 84-107 17-40 (179)
251 2hup_A RAS-related protein RAB 96.0 0.04 1.4E-06 45.5 9.7 23 84-106 31-53 (201)
252 3crm_A TRNA delta(2)-isopenten 96.0 0.0052 1.8E-07 54.9 4.3 23 84-106 7-29 (323)
253 2hf9_A Probable hydrogenase ni 96.0 0.0069 2.4E-07 51.2 5.0 42 66-107 22-63 (226)
254 2bbw_A Adenylate kinase 4, AK4 96.0 0.0049 1.7E-07 53.0 4.1 24 83-106 28-51 (246)
255 1e4v_A Adenylate kinase; trans 96.0 0.0037 1.3E-07 52.6 3.2 23 84-106 2-24 (214)
256 1wp9_A ATP-dependent RNA helic 96.0 0.028 9.7E-07 52.9 9.8 37 66-106 11-47 (494)
257 3pqc_A Probable GTP-binding pr 96.0 0.16 5.4E-06 41.1 13.2 24 83-106 24-47 (195)
258 3eiq_A Eukaryotic initiation f 96.0 0.02 6.9E-07 53.0 8.5 40 155-194 183-223 (414)
259 4dsu_A GTPase KRAS, isoform 2B 95.9 0.033 1.1E-06 45.1 8.8 23 85-107 7-29 (189)
260 2bdt_A BH3686; alpha-beta prot 95.9 0.0043 1.5E-07 50.9 3.3 22 85-106 5-26 (189)
261 2v3c_C SRP54, signal recogniti 95.9 0.011 3.8E-07 55.3 6.5 24 84-107 101-124 (432)
262 1nn5_A Similar to deoxythymidy 95.9 0.004 1.4E-07 52.2 3.2 24 84-107 11-34 (215)
263 1p9r_A General secretion pathw 95.9 0.011 3.6E-07 55.1 6.2 49 58-107 144-192 (418)
264 2pl3_A Probable ATP-dependent 95.9 0.025 8.6E-07 48.1 8.2 39 155-193 171-210 (236)
265 2v54_A DTMP kinase, thymidylat 95.9 0.0041 1.4E-07 51.7 3.2 23 84-106 6-28 (204)
266 2oca_A DAR protein, ATP-depend 95.9 0.028 9.5E-07 53.9 9.4 121 66-195 115-263 (510)
267 3tkl_A RAS-related protein RAB 95.9 0.022 7.5E-07 46.6 7.6 23 85-107 19-41 (196)
268 2xau_A PRE-mRNA-splicing facto 95.9 0.038 1.3E-06 55.8 10.6 22 84-105 111-132 (773)
269 4dhe_A Probable GTP-binding pr 95.9 0.077 2.6E-06 44.4 11.2 24 82-105 29-52 (223)
270 1cke_A CK, MSSA, protein (cyti 95.9 0.0049 1.7E-07 52.2 3.6 23 84-106 7-29 (227)
271 3ly5_A ATP-dependent RNA helic 95.9 0.013 4.5E-07 50.9 6.4 39 155-193 201-240 (262)
272 2j37_W Signal recognition part 95.9 0.11 3.9E-06 49.4 13.3 23 85-107 104-126 (504)
273 1m7b_A RND3/RHOE small GTP-bin 95.9 0.018 6.2E-07 46.8 6.9 23 85-107 10-32 (184)
274 3tr0_A Guanylate kinase, GMP k 95.9 0.0049 1.7E-07 51.2 3.4 23 84-106 9-31 (205)
275 2j0s_A ATP-dependent RNA helic 95.9 0.046 1.6E-06 50.6 10.5 38 155-192 179-217 (410)
276 3tw8_B RAS-related protein RAB 95.9 0.0048 1.6E-07 49.8 3.3 22 84-105 11-32 (181)
277 3clv_A RAB5 protein, putative; 95.9 0.018 6.2E-07 47.3 7.0 23 84-106 9-31 (208)
278 2j41_A Guanylate kinase; GMP, 95.9 0.0042 1.4E-07 51.7 3.0 23 84-106 8-30 (207)
279 1z2a_A RAS-related protein RAB 95.9 0.0098 3.3E-07 47.3 5.1 24 84-107 7-30 (168)
280 3ney_A 55 kDa erythrocyte memb 95.8 0.0053 1.8E-07 50.8 3.4 23 84-106 21-43 (197)
281 2bov_A RAla, RAS-related prote 95.8 0.026 9E-07 46.5 7.9 23 84-106 16-38 (206)
282 2pez_A Bifunctional 3'-phospho 95.8 0.0061 2.1E-07 49.6 3.8 22 85-106 8-29 (179)
283 2r6a_A DNAB helicase, replicat 95.8 0.077 2.6E-06 50.0 12.0 23 85-107 206-228 (454)
284 1c1y_A RAS-related protein RAP 95.8 0.059 2E-06 42.5 9.7 22 85-106 6-27 (167)
285 2dyk_A GTP-binding protein; GT 95.8 0.056 1.9E-06 42.3 9.5 24 83-106 2-25 (161)
286 1m7g_A Adenylylsulfate kinase; 95.8 0.009 3.1E-07 50.0 4.9 24 84-107 27-50 (211)
287 3bc1_A RAS-related protein RAB 95.8 0.02 6.7E-07 46.7 6.9 22 85-106 14-35 (195)
288 2eyq_A TRCF, transcription-rep 95.8 0.14 4.7E-06 54.1 14.8 40 65-104 607-646 (1151)
289 1ek0_A Protein (GTP-binding pr 95.8 0.02 6.9E-07 45.4 6.8 23 85-107 6-28 (170)
290 3e2i_A Thymidine kinase; Zn-bi 95.8 0.0038 1.3E-07 52.1 2.4 35 155-192 101-135 (219)
291 3a00_A Guanylate kinase, GMP k 95.8 0.0055 1.9E-07 50.2 3.4 22 85-106 4-25 (186)
292 1r8s_A ADP-ribosylation factor 95.8 0.13 4.5E-06 40.4 11.6 24 84-107 2-25 (164)
293 3llu_A RAS-related GTP-binding 95.8 0.097 3.3E-06 42.8 11.1 22 84-105 22-43 (196)
294 1ls1_A Signal recognition part 95.8 0.067 2.3E-06 47.3 10.5 23 85-107 101-123 (295)
295 2a9k_A RAS-related protein RAL 95.7 0.024 8.1E-07 45.9 7.1 23 85-107 21-43 (187)
296 1lvg_A Guanylate kinase, GMP k 95.7 0.0065 2.2E-07 50.4 3.6 23 84-106 6-28 (198)
297 1r2q_A RAS-related protein RAB 95.7 0.021 7.1E-07 45.3 6.6 22 85-106 9-30 (170)
298 2z43_A DNA repair and recombin 95.7 0.018 6.1E-07 51.8 6.7 40 85-124 110-152 (324)
299 1fuu_A Yeast initiation factor 95.7 0.029 9.9E-07 51.5 8.3 40 155-194 162-202 (394)
300 3con_A GTPase NRAS; structural 95.7 0.019 6.6E-07 46.7 6.3 23 85-107 24-46 (190)
301 1gwn_A RHO-related GTP-binding 95.7 0.026 8.7E-07 47.0 7.1 24 84-107 30-53 (205)
302 3fe2_A Probable ATP-dependent 95.7 0.051 1.8E-06 46.3 9.2 39 155-193 176-215 (242)
303 3foz_A TRNA delta(2)-isopenten 95.7 0.01 3.4E-07 52.5 4.7 22 85-106 13-34 (316)
304 2f7s_A C25KG, RAS-related prot 95.6 0.032 1.1E-06 46.5 7.7 21 85-105 28-48 (217)
305 1svi_A GTP-binding protein YSX 95.6 0.14 4.7E-06 41.7 11.4 24 82-105 23-46 (195)
306 1z06_A RAS-related protein RAB 95.6 0.032 1.1E-06 45.5 7.4 24 84-107 22-45 (189)
307 1xjc_A MOBB protein homolog; s 95.6 0.0092 3.1E-07 48.0 3.9 26 82-107 4-29 (169)
308 3b85_A Phosphate starvation-in 95.6 0.0075 2.6E-07 50.5 3.4 42 54-105 4-45 (208)
309 2v6i_A RNA helicase; membrane, 95.5 0.047 1.6E-06 51.2 9.1 23 83-105 3-26 (431)
310 3r20_A Cytidylate kinase; stru 95.5 0.0084 2.9E-07 51.0 3.6 23 84-106 11-33 (233)
311 1zbd_A Rabphilin-3A; G protein 95.5 0.024 8.2E-07 46.7 6.4 23 84-106 10-32 (203)
312 2fwr_A DNA repair protein RAD2 95.5 0.035 1.2E-06 52.6 8.3 39 65-106 94-132 (472)
313 3nwj_A ATSK2; P loop, shikimat 95.5 0.0098 3.3E-07 51.3 4.0 23 84-106 50-72 (250)
314 2fh5_B SR-beta, signal recogni 95.5 0.064 2.2E-06 44.6 9.1 25 83-107 8-32 (214)
315 2p5s_A RAS and EF-hand domain 95.5 0.026 8.9E-07 46.5 6.5 23 84-106 30-52 (199)
316 2qag_C Septin-7; cell cycle, c 95.5 0.13 4.5E-06 47.7 11.8 23 85-107 34-56 (418)
317 1wf3_A GTP-binding protein; GT 95.5 0.44 1.5E-05 42.1 14.7 135 84-228 9-169 (301)
318 2il1_A RAB12; G-protein, GDP, 95.5 0.024 8.3E-07 46.4 6.2 21 85-105 29-49 (192)
319 2if2_A Dephospho-COA kinase; a 95.5 0.0074 2.5E-07 50.1 3.0 22 84-106 3-24 (204)
320 1z08_A RAS-related protein RAB 95.5 0.039 1.3E-06 43.8 7.3 22 85-106 9-30 (170)
321 2efe_B Small GTP-binding prote 95.4 0.029 9.8E-07 45.1 6.5 22 85-106 15-36 (181)
322 1ky3_A GTP-binding protein YPT 95.4 0.021 7.3E-07 45.9 5.7 23 84-106 10-32 (182)
323 3a8t_A Adenylate isopentenyltr 95.4 0.0078 2.7E-07 54.0 3.2 24 84-107 42-65 (339)
324 4a82_A Cystic fibrosis transme 95.4 0.046 1.6E-06 53.3 8.9 43 155-197 495-538 (578)
325 1uj2_A Uridine-cytidine kinase 95.4 0.0088 3E-07 51.6 3.5 24 84-107 24-47 (252)
326 3th5_A RAS-related C3 botulinu 94.4 0.0026 8.9E-08 52.9 0.0 29 78-106 26-54 (204)
327 2xxa_A Signal recognition part 95.4 0.14 4.8E-06 47.8 11.7 24 85-108 103-126 (433)
328 2bme_A RAB4A, RAS-related prot 95.4 0.021 7.2E-07 46.3 5.5 24 84-107 12-35 (186)
329 2erx_A GTP-binding protein DI- 95.4 0.021 7.3E-07 45.4 5.4 22 84-105 5-26 (172)
330 3kkq_A RAS-related protein M-R 95.4 0.023 7.9E-07 45.9 5.6 23 85-107 21-43 (183)
331 3q72_A GTP-binding protein RAD 95.4 0.018 6E-07 45.7 4.8 21 84-104 4-24 (166)
332 3q3j_B RHO-related GTP-binding 95.4 0.013 4.6E-07 49.0 4.3 23 85-107 30-52 (214)
333 1jjv_A Dephospho-COA kinase; P 95.4 0.0088 3E-07 49.8 3.1 20 85-104 5-24 (206)
334 2fg5_A RAB-22B, RAS-related pr 95.3 0.035 1.2E-06 45.4 6.7 22 85-106 26-47 (192)
335 2qmh_A HPR kinase/phosphorylas 95.3 0.0072 2.5E-07 49.7 2.4 22 85-106 37-58 (205)
336 1s96_A Guanylate kinase, GMP k 95.3 0.01 3.5E-07 50.1 3.4 23 84-106 18-40 (219)
337 1zd9_A ADP-ribosylation factor 95.3 0.082 2.8E-06 42.9 8.9 23 85-107 25-47 (188)
338 2grj_A Dephospho-COA kinase; T 95.3 0.012 4.2E-07 48.5 3.8 22 85-106 15-36 (192)
339 3exa_A TRNA delta(2)-isopenten 95.3 0.012 4E-07 52.2 3.8 23 84-106 5-27 (322)
340 4eaq_A DTMP kinase, thymidylat 95.3 0.011 3.8E-07 50.3 3.6 23 85-107 29-51 (229)
341 1mh1_A RAC1; GTP-binding, GTPa 95.3 0.011 3.8E-07 47.9 3.5 23 85-107 8-30 (186)
342 1htw_A HI0065; nucleotide-bind 95.3 0.012 4.1E-07 46.8 3.5 23 84-106 35-57 (158)
343 3ake_A Cytidylate kinase; CMP 95.3 0.011 3.9E-07 49.1 3.5 23 84-106 4-26 (208)
344 3qf4_A ABC transporter, ATP-bi 95.3 0.067 2.3E-06 52.2 9.5 42 155-196 497-539 (587)
345 1gtv_A TMK, thymidylate kinase 95.3 0.0042 1.4E-07 52.0 0.9 23 85-107 3-25 (214)
346 3d3q_A TRNA delta(2)-isopenten 95.3 0.013 4.5E-07 52.6 4.1 23 84-106 9-31 (340)
347 1np6_A Molybdopterin-guanine d 95.3 0.014 4.7E-07 47.3 3.9 26 82-107 6-31 (174)
348 1z6g_A Guanylate kinase; struc 95.3 0.011 3.7E-07 49.9 3.4 23 84-106 25-47 (218)
349 2qu8_A Putative nucleolar GTP- 95.3 0.14 4.8E-06 43.0 10.5 22 84-105 31-52 (228)
350 4e22_A Cytidylate kinase; P-lo 95.2 0.014 4.7E-07 50.5 4.1 23 84-106 29-51 (252)
351 2gk6_A Regulator of nonsense t 95.2 0.02 6.8E-07 56.4 5.7 39 66-107 182-220 (624)
352 2q6t_A DNAB replication FORK h 95.2 0.14 4.7E-06 48.1 11.3 36 85-122 203-238 (444)
353 3q85_A GTP-binding protein REM 95.2 0.032 1.1E-06 44.3 6.0 21 84-104 4-24 (169)
354 1g8f_A Sulfate adenylyltransfe 95.2 0.017 5.7E-07 55.1 4.8 44 65-108 376-421 (511)
355 3asz_A Uridine kinase; cytidin 95.2 0.011 3.6E-07 49.5 3.2 22 85-106 9-30 (211)
356 2g6b_A RAS-related protein RAB 95.2 0.033 1.1E-06 44.7 6.1 23 85-107 13-35 (180)
357 2j1l_A RHO-related GTP-binding 95.2 0.019 6.6E-07 48.0 4.7 21 85-105 37-57 (214)
358 3reg_A RHO-like small GTPase; 95.2 0.013 4.3E-07 48.1 3.5 23 85-107 26-48 (194)
359 1g16_A RAS-related protein SEC 95.2 0.021 7.3E-07 45.3 4.8 23 84-106 5-27 (170)
360 1tf7_A KAIC; homohexamer, hexa 95.2 0.12 4.1E-06 49.7 10.8 113 85-210 42-208 (525)
361 1uf9_A TT1252 protein; P-loop, 95.2 0.011 3.7E-07 49.0 3.1 22 84-105 10-31 (203)
362 3ihw_A Centg3; RAS, centaurin, 95.2 0.059 2E-06 43.8 7.5 23 85-107 23-45 (184)
363 1znw_A Guanylate kinase, GMP k 95.1 0.012 4.3E-07 49.0 3.4 23 84-106 22-44 (207)
364 1zj6_A ADP-ribosylation factor 95.1 0.083 2.9E-06 42.8 8.4 25 81-105 15-39 (187)
365 3bwd_D RAC-like GTP-binding pr 95.1 0.0079 2.7E-07 48.6 2.1 23 84-106 10-32 (182)
366 3oes_A GTPase rhebl1; small GT 95.1 0.015 5.3E-07 48.0 4.0 24 84-107 26-49 (201)
367 2eyu_A Twitching motility prot 95.1 0.013 4.6E-07 50.8 3.6 23 84-106 27-49 (261)
368 3tqc_A Pantothenate kinase; bi 95.1 0.025 8.7E-07 50.5 5.5 23 85-107 95-117 (321)
369 1sky_E F1-ATPase, F1-ATP synth 95.1 0.043 1.5E-06 51.4 7.1 23 84-106 153-175 (473)
370 2ew1_A RAS-related protein RAB 95.1 0.027 9.2E-07 46.7 5.3 24 84-107 28-51 (201)
371 2y8e_A RAB-protein 6, GH09086P 95.1 0.031 1.1E-06 44.7 5.6 22 85-106 17-38 (179)
372 2qt1_A Nicotinamide riboside k 95.0 0.0089 3E-07 49.8 2.2 22 85-106 24-45 (207)
373 2ehv_A Hypothetical protein PH 95.0 0.012 4.3E-07 50.3 3.2 21 84-104 32-52 (251)
374 2z0m_A 337AA long hypothetical 95.0 0.076 2.6E-06 47.4 8.6 22 84-105 33-54 (337)
375 2gj8_A MNME, tRNA modification 95.0 0.093 3.2E-06 42.0 8.2 22 84-105 6-27 (172)
376 2va8_A SSO2462, SKI2-type heli 95.0 0.061 2.1E-06 53.9 8.6 21 83-103 47-67 (715)
377 2gf0_A GTP-binding protein DI- 95.0 0.08 2.7E-06 43.2 8.0 23 84-106 10-32 (199)
378 2oap_1 GSPE-2, type II secreti 95.0 0.019 6.4E-07 55.0 4.5 39 66-106 246-284 (511)
379 2oil_A CATX-8, RAS-related pro 95.0 0.034 1.2E-06 45.4 5.6 23 85-107 28-50 (193)
380 3b5x_A Lipid A export ATP-bind 94.9 0.14 4.9E-06 49.9 10.8 42 155-196 498-540 (582)
381 2a5j_A RAS-related protein RAB 94.9 0.032 1.1E-06 45.6 5.3 22 85-106 24-45 (191)
382 3t1o_A Gliding protein MGLA; G 94.9 0.052 1.8E-06 44.2 6.6 22 85-106 17-38 (198)
383 3iev_A GTP-binding protein ERA 94.9 0.25 8.4E-06 43.9 11.5 22 85-106 13-34 (308)
384 3bgw_A DNAB-like replicative h 94.9 0.26 8.7E-06 46.3 12.0 35 85-122 200-234 (444)
385 1upt_A ARL1, ADP-ribosylation 94.9 0.066 2.3E-06 42.4 7.0 23 84-106 9-31 (171)
386 3cph_A RAS-related protein SEC 94.9 0.042 1.4E-06 45.6 6.0 23 84-106 22-44 (213)
387 3qf4_B Uncharacterized ABC tra 94.9 0.06 2E-06 52.7 7.9 42 155-196 509-551 (598)
388 1x3s_A RAS-related protein RAB 94.9 0.029 1E-06 45.7 4.9 23 85-107 18-40 (195)
389 1vht_A Dephospho-COA kinase; s 94.8 0.017 5.7E-07 48.6 3.4 21 84-104 6-26 (218)
390 2atv_A RERG, RAS-like estrogen 94.8 0.11 3.9E-06 42.3 8.4 23 84-106 30-52 (196)
391 2yc2_C IFT27, small RAB-relate 94.8 0.022 7.7E-07 47.0 4.1 22 84-105 22-43 (208)
392 2ged_A SR-beta, signal recogni 94.8 0.034 1.2E-06 45.4 5.1 24 83-106 49-72 (193)
393 1rj9_A FTSY, signal recognitio 94.8 0.021 7.3E-07 50.7 4.0 23 85-107 105-127 (304)
394 2xgj_A ATP-dependent RNA helic 94.8 0.11 3.8E-06 54.0 9.9 53 49-104 69-123 (1010)
395 1pzn_A RAD51, DNA repair and r 94.8 0.068 2.3E-06 48.5 7.4 22 85-106 134-155 (349)
396 4a1f_A DNAB helicase, replicat 94.7 0.26 8.8E-06 44.3 11.0 35 85-122 49-83 (338)
397 2v9p_A Replication protein E1; 94.7 0.025 8.7E-07 50.1 4.3 23 84-106 128-150 (305)
398 3b60_A Lipid A export ATP-bind 94.7 0.13 4.6E-06 50.1 9.9 42 155-196 498-540 (582)
399 3lv8_A DTMP kinase, thymidylat 94.7 0.019 6.6E-07 48.9 3.4 24 85-108 30-53 (236)
400 2atx_A Small GTP binding prote 94.7 0.02 7E-07 46.8 3.5 24 84-107 20-43 (194)
401 2fu5_C RAS-related protein RAB 94.6 0.021 7.3E-07 46.1 3.5 22 85-106 11-32 (183)
402 4edh_A DTMP kinase, thymidylat 94.6 0.022 7.5E-07 47.8 3.5 25 85-109 9-33 (213)
403 3szr_A Interferon-induced GTP- 94.6 0.14 4.7E-06 50.2 9.8 26 81-106 44-69 (608)
404 3tqf_A HPR(Ser) kinase; transf 94.6 0.019 6.4E-07 46.1 2.9 21 85-105 19-39 (181)
405 3thx_A DNA mismatch repair pro 94.6 0.095 3.2E-06 53.8 8.8 20 85-104 665-684 (934)
406 2jeo_A Uridine-cytidine kinase 94.6 0.021 7.3E-07 49.0 3.5 22 85-106 28-49 (245)
407 2wjy_A Regulator of nonsense t 94.6 0.035 1.2E-06 56.1 5.6 40 66-108 358-397 (800)
408 3ld9_A DTMP kinase, thymidylat 94.6 0.023 7.9E-07 48.0 3.6 24 84-107 23-46 (223)
409 1wrb_A DJVLGB; RNA helicase, D 94.6 0.079 2.7E-06 45.5 7.2 18 84-101 62-79 (253)
410 3lnc_A Guanylate kinase, GMP k 94.6 0.012 4.1E-07 50.0 1.9 23 84-106 29-52 (231)
411 2gco_A H9, RHO-related GTP-bin 94.6 0.026 8.8E-07 46.6 3.9 23 84-106 27-49 (201)
412 3p32_A Probable GTPase RV1496/ 94.6 0.041 1.4E-06 50.1 5.5 28 81-108 78-105 (355)
413 2o52_A RAS-related protein RAB 94.6 0.042 1.5E-06 45.3 5.2 22 84-105 27-48 (200)
414 1ewq_A DNA mismatch repair pro 94.5 0.057 1.9E-06 54.2 6.9 22 85-106 579-600 (765)
415 2j0v_A RAC-like GTP-binding pr 94.5 0.016 5.5E-07 48.3 2.5 23 85-107 12-34 (212)
416 3thx_B DNA mismatch repair pro 94.5 0.092 3.1E-06 53.7 8.3 21 85-105 676-696 (918)
417 2zpa_A Uncharacterized protein 94.5 0.13 4.3E-06 50.5 8.9 99 67-177 178-277 (671)
418 1nlf_A Regulatory protein REPA 94.5 0.021 7.1E-07 50.1 3.2 24 84-107 32-55 (279)
419 3v9p_A DTMP kinase, thymidylat 94.4 0.019 6.5E-07 48.7 2.7 24 84-107 27-50 (227)
420 1q3t_A Cytidylate kinase; nucl 94.4 0.032 1.1E-06 47.5 4.1 23 84-106 18-40 (236)
421 3io5_A Recombination and repai 94.4 0.041 1.4E-06 48.8 4.8 37 85-122 31-67 (333)
422 2bcg_Y Protein YP2, GTP-bindin 94.4 0.029 1E-06 46.4 3.8 24 84-107 10-33 (206)
423 3aez_A Pantothenate kinase; tr 94.4 0.025 8.7E-07 50.4 3.6 23 85-107 93-115 (312)
424 1z63_A Helicase of the SNF2/RA 94.4 0.21 7.3E-06 47.5 10.3 109 84-196 58-189 (500)
425 3e70_C DPA, signal recognition 94.4 0.039 1.3E-06 49.6 4.8 23 85-107 132-154 (328)
426 2ewv_A Twitching motility prot 94.3 0.026 8.8E-07 51.8 3.5 24 84-107 138-161 (372)
427 2h92_A Cytidylate kinase; ross 94.3 0.029 9.8E-07 47.1 3.6 23 84-106 5-27 (219)
428 2xzl_A ATP-dependent helicase 94.3 0.04 1.4E-06 55.8 5.2 38 66-106 362-399 (802)
429 4tmk_A Protein (thymidylate ki 94.3 0.055 1.9E-06 45.3 5.2 26 84-109 5-30 (213)
430 2z83_A Helicase/nucleoside tri 94.3 0.067 2.3E-06 50.5 6.4 23 84-106 23-46 (459)
431 2f6r_A COA synthase, bifunctio 94.2 0.023 8E-07 49.9 3.0 20 85-104 78-97 (281)
432 1cr0_A DNA primase/helicase; R 94.2 0.025 8.5E-07 50.0 3.2 23 85-107 38-60 (296)
433 3gj0_A GTP-binding nuclear pro 94.2 0.018 6.2E-07 48.3 2.2 21 85-105 18-38 (221)
434 1gm5_A RECG; helicase, replica 94.2 0.096 3.3E-06 52.8 7.7 41 65-105 372-412 (780)
435 2gza_A Type IV secretion syste 94.2 0.035 1.2E-06 50.6 4.2 34 71-106 166-199 (361)
436 1sq5_A Pantothenate kinase; P- 94.2 0.05 1.7E-06 48.5 5.0 22 85-106 83-104 (308)
437 2zts_A Putative uncharacterize 94.2 0.03 1E-06 47.8 3.5 21 85-105 33-53 (251)
438 2ocp_A DGK, deoxyguanosine kin 94.1 0.026 8.9E-07 48.2 3.1 22 85-106 5-26 (241)
439 3eph_A TRNA isopentenyltransfe 94.1 0.027 9.1E-07 51.8 3.2 22 85-106 5-26 (409)
440 4f4c_A Multidrug resistance pr 94.1 0.12 4.3E-06 55.3 8.7 23 84-106 446-468 (1321)
441 2f9l_A RAB11B, member RAS onco 94.1 0.031 1.1E-06 46.0 3.3 22 85-106 8-29 (199)
442 3b9q_A Chloroplast SRP recepto 94.1 0.032 1.1E-06 49.5 3.6 23 85-107 103-125 (302)
443 3tif_A Uncharacterized ABC tra 94.1 0.029 1E-06 47.8 3.2 42 155-196 163-207 (235)
444 3l9o_A ATP-dependent RNA helic 94.1 0.058 2E-06 56.7 6.0 23 84-106 201-223 (1108)
445 2onk_A Molybdate/tungstate ABC 94.0 0.03 1E-06 47.9 3.2 42 155-196 144-188 (240)
446 1oix_A RAS-related protein RAB 94.0 0.029 1E-06 45.9 3.0 23 85-107 32-54 (191)
447 1a7j_A Phosphoribulokinase; tr 94.0 0.02 6.8E-07 50.6 2.0 23 84-106 7-29 (290)
448 2ffh_A Protein (FFH); SRP54, s 94.0 0.55 1.9E-05 43.6 11.8 23 85-107 101-123 (425)
449 2f1r_A Molybdopterin-guanine d 93.9 0.017 5.8E-07 46.6 1.4 25 83-107 3-27 (171)
450 3kta_A Chromosome segregation 93.9 0.034 1.2E-06 45.1 3.2 23 85-107 29-51 (182)
451 3tmk_A Thymidylate kinase; pho 93.9 0.033 1.1E-06 46.7 3.2 24 84-107 7-30 (216)
452 2wji_A Ferrous iron transport 93.9 0.035 1.2E-06 44.1 3.2 22 84-105 5-26 (165)
453 2pcj_A ABC transporter, lipopr 93.9 0.024 8.4E-07 47.9 2.3 43 154-196 157-201 (224)
454 3hjn_A DTMP kinase, thymidylat 93.9 0.093 3.2E-06 43.3 5.8 25 85-109 3-27 (197)
455 2zej_A Dardarin, leucine-rich 93.8 0.03 1E-06 45.5 2.7 20 85-104 5-24 (184)
456 2zj8_A DNA helicase, putative 93.8 0.09 3.1E-06 52.7 6.7 24 83-106 40-64 (720)
457 2lkc_A Translation initiation 93.8 0.048 1.6E-06 43.7 3.9 25 82-106 8-32 (178)
458 3cr8_A Sulfate adenylyltranfer 93.8 0.033 1.1E-06 53.7 3.4 41 67-107 352-394 (552)
459 1sgw_A Putative ABC transporte 93.8 0.03 1E-06 47.0 2.7 23 84-106 37-59 (214)
460 2cbz_A Multidrug resistance-as 93.8 0.029 1E-06 47.9 2.6 43 155-197 145-191 (237)
461 3gmt_A Adenylate kinase; ssgci 93.8 0.043 1.5E-06 46.4 3.6 23 85-107 11-33 (230)
462 2gks_A Bifunctional SAT/APS ki 93.7 0.08 2.7E-06 51.1 5.8 43 65-107 353-397 (546)
463 3o8b_A HCV NS3 protease/helica 93.7 0.25 8.5E-06 48.6 9.3 29 155-183 318-346 (666)
464 1p5z_B DCK, deoxycytidine kina 93.7 0.016 5.5E-07 50.3 0.8 23 84-106 26-48 (263)
465 1m8p_A Sulfate adenylyltransfe 93.7 0.041 1.4E-06 53.4 3.8 23 85-107 399-421 (573)
466 2nzj_A GTP-binding protein REM 93.6 0.041 1.4E-06 43.9 3.2 22 84-105 6-27 (175)
467 4f4c_A Multidrug resistance pr 93.6 0.23 7.8E-06 53.3 9.7 43 155-197 1235-1278(1321)
468 2www_A Methylmalonic aciduria 93.6 0.088 3E-06 47.7 5.7 23 84-106 76-98 (349)
469 4a2p_A RIG-I, retinoic acid in 93.6 0.61 2.1E-05 44.8 12.1 23 84-106 24-46 (556)
470 4hlc_A DTMP kinase, thymidylat 93.6 0.048 1.7E-06 45.4 3.6 23 85-107 5-27 (205)
471 3sop_A Neuronal-specific septi 93.6 0.039 1.3E-06 48.1 3.1 22 85-106 5-26 (270)
472 3r7w_A Gtpase1, GTP-binding pr 93.6 0.85 2.9E-05 40.3 12.0 21 85-105 6-26 (307)
473 1b0u_A Histidine permease; ABC 93.6 0.034 1.1E-06 48.3 2.7 23 84-106 34-56 (262)
474 3tbk_A RIG-I helicase domain; 93.5 0.34 1.2E-05 46.5 10.1 23 84-106 21-43 (555)
475 2d2e_A SUFC protein; ABC-ATPas 93.5 0.041 1.4E-06 47.4 3.2 42 155-196 161-204 (250)
476 2w00_A HSDR, R.ECOR124I; ATP-b 93.5 0.44 1.5E-05 49.6 11.3 23 84-106 302-324 (1038)
477 3gfo_A Cobalt import ATP-bindi 93.5 0.035 1.2E-06 48.5 2.7 43 155-197 161-206 (275)
478 2og2_A Putative signal recogni 93.5 0.046 1.6E-06 49.7 3.6 23 85-107 160-182 (359)
479 2zu0_C Probable ATP-dependent 93.5 0.043 1.5E-06 47.8 3.2 42 155-196 182-225 (267)
480 2whx_A Serine protease/ntpase/ 93.4 0.32 1.1E-05 47.7 9.7 23 84-106 188-211 (618)
481 1mv5_A LMRA, multidrug resista 93.4 0.037 1.3E-06 47.4 2.7 23 84-106 30-52 (243)
482 2db3_A ATP-dependent RNA helic 93.4 0.29 1E-05 45.7 9.1 16 84-99 95-110 (434)
483 1g6h_A High-affinity branched- 93.4 0.037 1.3E-06 47.9 2.6 43 155-197 171-215 (257)
484 1wb9_A DNA mismatch repair pro 93.4 0.3 1E-05 49.3 9.6 22 85-106 610-631 (800)
485 2ff7_A Alpha-hemolysin translo 93.4 0.037 1.3E-06 47.5 2.6 42 155-196 163-205 (247)
486 1ji0_A ABC transporter; ATP bi 93.4 0.038 1.3E-06 47.3 2.6 41 155-195 157-199 (240)
487 2pze_A Cystic fibrosis transme 93.4 0.039 1.3E-06 46.8 2.7 42 155-196 148-191 (229)
488 2olj_A Amino acid ABC transpor 93.3 0.038 1.3E-06 47.9 2.7 41 155-195 177-219 (263)
489 2axn_A 6-phosphofructo-2-kinas 93.3 0.049 1.7E-06 52.3 3.6 23 85-107 38-60 (520)
490 3fvq_A Fe(3+) IONS import ATP- 93.3 0.04 1.4E-06 50.0 2.8 23 84-106 32-54 (359)
491 2qi9_C Vitamin B12 import ATP- 93.3 0.04 1.4E-06 47.4 2.7 23 84-106 28-50 (249)
492 1q57_A DNA primase/helicase; d 93.2 0.71 2.4E-05 44.0 11.6 36 85-122 245-280 (503)
493 4g1u_C Hemin import ATP-bindin 93.2 0.041 1.4E-06 47.8 2.7 42 155-196 165-209 (266)
494 2wjg_A FEOB, ferrous iron tran 93.2 0.052 1.8E-06 44.0 3.2 21 85-105 10-30 (188)
495 1vpl_A ABC transporter, ATP-bi 93.2 0.042 1.4E-06 47.5 2.7 42 155-196 164-207 (256)
496 2rcn_A Probable GTPase ENGC; Y 93.2 0.029 9.9E-07 50.9 1.7 23 84-106 217-239 (358)
497 2jlq_A Serine protease subunit 93.2 0.33 1.1E-05 45.6 9.1 22 84-105 21-43 (451)
498 2ixe_A Antigen peptide transpo 93.1 0.042 1.4E-06 47.9 2.6 42 155-196 174-218 (271)
499 1tq4_A IIGP1, interferon-induc 93.1 0.15 5E-06 47.3 6.4 23 84-106 71-93 (413)
500 2ghi_A Transport protein; mult 93.1 0.042 1.5E-06 47.6 2.6 43 155-197 173-216 (260)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.5e-45 Score=340.68 Aligned_cols=319 Identities=34% Similarity=0.621 Sum_probs=285.9
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
...||.+||+|..|++++|++++++.|..++..++.+|++|+||+|+|||++++++++.+.+... ...+.++++++..+
T Consensus 11 ~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~ 89 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDDRG 89 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSCCS
T ss_pred cCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-cceEEEEcCccccc
Confidence 46799999999999999999999999999999999999999999999999999999999876542 34678888887777
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
++.+++.+..+...... +. ++++++||||+|.++.+++++|++++|+++..+.||+++|.+.++.++++|||
T Consensus 90 ~~~ir~~i~~~~~~~~~-------~~-~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 90 IDVVRNQIKDFASTRQI-------FS-KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHTHHHHHHHBCCS-------SS-CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHHHHHHhhccc-------CC-CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 88888777666532111 11 25799999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC----CCChhhHhhhhCCCCH
Q 016800 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS----SITSKDLISVSGVIPP 282 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~----~It~~~v~~~~~~~~~ 282 (382)
..+.|.+++.+++..++..+++.+++.++++++..+++.++||+|++++.++.++...+. .||.++|.++++...+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~ 241 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRP 241 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCH
Confidence 999999999999999999999989999999999999999999999999999988765432 6999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHhhcCCChHHHH
Q 016800 283 EVVEGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDIS-DEQQARICKCLAEVDKCLVDGADEYLQL 360 (382)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~~l~l 360 (382)
..++++++++..+++.+++.++.+++. .|+++..++..+.++++.. .++ ...+.++++.+.+++++++.|+|+.++|
T Consensus 242 ~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l 320 (340)
T 1sxj_C 242 SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY-ELQNEETRVHLLTKLADIEYSISKGGNDQIQG 320 (340)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 999999999999999999999999998 9999999999999888763 466 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHccCC
Q 016800 361 LDVASNVIRAVCNMP 375 (382)
Q Consensus 361 ~~l~~~l~~~~~~~~ 375 (382)
+.|+++++++++..+
T Consensus 321 e~l~~~l~~~~~~~~ 335 (340)
T 1sxj_C 321 SAVIGAIKASFENET 335 (340)
T ss_dssp HHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHhhhcC
Confidence 999999999887654
No 2
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=9e-44 Score=330.93 Aligned_cols=324 Identities=48% Similarity=0.814 Sum_probs=282.5
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.+..||.++|+|.+|++++|++++++.+..++..++.+|++|+||||+|||++++++++.+.++......+.++++.+..
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 56689999999999999999999999999999999888899999999999999999999986543334567888888766
Q ss_pred chHHHHHHHHHHHHhhhcCCCC--CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhh
Q 016800 126 GINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 203 (382)
+...+++.+..+.......... ......+++++|+|||++.++...++.|++++++++..++||+++|.+..+.++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 102 GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 7777776666555432111000 00011236689999999999999999999999999999999999999999999999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-----CCChhhHhhhhC
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-----SITSKDLISVSG 278 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~-----~It~~~v~~~~~ 278 (382)
+||..+.|++++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.+.+. .||.++|.++++
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999988876532 799999999999
Q ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHH
Q 016800 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYL 358 (382)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l 358 (382)
......++++++++..++...++.++++++..|+++..++..+.+++.....++...+..++..+++++++++.|.|+.+
T Consensus 262 ~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l 341 (353)
T 1sxj_D 262 VVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHI 341 (353)
T ss_dssp CCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 88889999999999999999999999999999999999999999988877689999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 016800 359 QLLDVASNVIR 369 (382)
Q Consensus 359 ~l~~l~~~l~~ 369 (382)
+|+.|+++++.
T Consensus 342 ~l~~~~~~~~~ 352 (353)
T 1sxj_D 342 QLLNLLVKISQ 352 (353)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999975
No 3
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=1.7e-43 Score=324.36 Aligned_cols=313 Identities=44% Similarity=0.742 Sum_probs=278.2
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
...||.++|+|.+|++++|+++.++.+.+++..++.+|++|+||+|+|||++++++++.+.++.. ...++++++++..+
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDNFIEMNASDERG 81 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-HHHCEEEETTSTTC
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-cCCeEEEeCccccC
Confidence 46799999999999999999999999999999999889999999999999999999999876542 34577888877656
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
.+.+++.+..+..... +..+++++++|||+|.++.+.++.|++++++++.+++||++++.+.++.+++++||
T Consensus 82 ~~~~~~~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 82 IDVVRHKIKEFARTAP--------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp TTTSSHHHHHHHHSCC--------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred hHHHHHHHHHHHhcCC--------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 5556555555542211 11126799999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHH
Q 016800 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~ 286 (382)
..+.|++++.+++..++..++.++|+.+++++++.++..++||+|.+++.++.++.. +..||.++|.++++...+..++
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~ 232 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEEMT 232 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS-SSCBCHHHHHHHTTCCCHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999988765 5689999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHH
Q 016800 287 GLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVAS 365 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~ 365 (382)
++++++..+++.+++.++.+++. .|+++..++..+.++++.. .++...+.+++..+.+++++++.|+++.++++.|++
T Consensus 233 ~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l-~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~ 311 (319)
T 2chq_A 233 ELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM-PIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLA 311 (319)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS-CSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999997 9999999999998887653 488889999999999999999999999999999999
Q ss_pred HHHHH
Q 016800 366 NVIRA 370 (382)
Q Consensus 366 ~l~~~ 370 (382)
+++++
T Consensus 312 ~l~~~ 316 (319)
T 2chq_A 312 YLSTL 316 (319)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99865
No 4
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=6.7e-43 Score=321.53 Aligned_cols=316 Identities=42% Similarity=0.690 Sum_probs=280.7
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
....||.++|+|.+|++++|+++.++.+..++..++.+|++|+||+|+|||++++++++.+.++.. ...++++++.+..
T Consensus 10 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~-~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 10 VLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW-RHNFLELNASDER 88 (327)
T ss_dssp HTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH-HHHEEEEETTCHH
T ss_pred ccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-cCceEEeeccccC
Confidence 356799999999999999999999999999999999989999999999999999999999865432 2457788887765
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcc
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 205 (382)
+.+.++..+..+....... .+++++|+|||+|.++.+.++.|++++++++.+++||++++.+..+.+++.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--------~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 89 GINVIREKVKEFARTKPIG--------GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHTTHHHHHHHHHSCCGG--------GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred chHHHHHHHHHHHhhCCcC--------CCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 5566666555554322111 12678999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHH
Q 016800 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285 (382)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~ 285 (382)
|..+.|+|++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.. ...||.++|..+++...+..+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~i 239 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVASRARPEDI 239 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSEECHHHHHHHTTCCCHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999987754 457999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHH
Q 016800 286 EGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364 (382)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~ 364 (382)
+++++++..+++..++..+++++ ..|.++..++..+.++++.. .++...+.+++..+.+++++++.|.|+.++|+.|+
T Consensus 240 ~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~-~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~ 318 (327)
T 1iqp_A 240 REMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-PIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALL 318 (327)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS-SSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999999998 89999999999998887653 58999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 016800 365 SNVIRAVC 372 (382)
Q Consensus 365 ~~l~~~~~ 372 (382)
++++++.+
T Consensus 319 ~~l~~~~~ 326 (327)
T 1iqp_A 319 AQFTLIGK 326 (327)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhc
Confidence 99998754
No 5
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=4.9e-42 Score=315.40 Aligned_cols=302 Identities=24% Similarity=0.340 Sum_probs=258.8
Q ss_pred ccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 45 ~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.....||.+||+|.+|++++|++++++.+.+++..++.++ +|++||||+|||++++++++.+ ...++++++++
T Consensus 10 ~~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l------~~~~~~i~~~~ 83 (324)
T 3u61_B 10 NEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV------NADMMFVNGSD 83 (324)
T ss_dssp CTTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT------TEEEEEEETTT
T ss_pred CcccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CCCEEEEcccc
Confidence 3567899999999999999999999999999999999888 6888889999999999999987 46788899876
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHHHHHhcCCceEEEEeecCccccchhh
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 202 (382)
. +.+.++..+..+....... +++++++|||+|.++ .+.++.|++++++++.++.||+++|.+.++.+++
T Consensus 84 ~-~~~~i~~~~~~~~~~~~~~---------~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 84 C-KIDFVRGPLTNFASAASFD---------GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp C-CHHHHHTHHHHHHHBCCCS---------SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTH
T ss_pred c-CHHHHHHHHHHHHhhcccC---------CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHH
Confidence 4 4677777676655442222 267899999999999 9999999999999999999999999999999999
Q ss_pred hcccceEEecCCCHHH-------HHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHh
Q 016800 203 ASRCAKFRFKPLSEEV-------MSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274 (382)
Q Consensus 203 ~sr~~~i~~~~~~~~~-------~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~ 274 (382)
+|||.++.|++|+.++ +..++..++..+++.+++ ++++.+++.++||+|.+++.|+.++ .++.||.+++.
T Consensus 154 ~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~--~~~~i~~~~v~ 231 (324)
T 3u61_B 154 QSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS--SKGVLDAGILS 231 (324)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG--GGTCBCC----
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh--ccCCCCHHHHH
Confidence 9999999999999887 456677778889999988 9999999999999999999999887 35679999999
Q ss_pred hhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCC
Q 016800 275 SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGA 354 (382)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 354 (382)
.+... ...++++++++..+++.+++.++.+++. ++..++..+..++.. .++...+.++++.+++++++++.|.
T Consensus 232 ~~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~--~~~~~~l~~i~~~l~~~d~~l~~g~ 304 (324)
T 3u61_B 232 LVTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIYS--RVTPQSIIRMYEIVGENNQYHGIAA 304 (324)
T ss_dssp ----------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHhCC--HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 88765 5578889999999999999999999977 899999999888776 5899999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHH
Q 016800 355 DEYLQLLDVASNVIRAV 371 (382)
Q Consensus 355 ~~~l~l~~l~~~l~~~~ 371 (382)
++.++|+.|+++++..+
T Consensus 305 ~~~~~le~~~~~~~~~~ 321 (324)
T 3u61_B 305 NTELHLAYLFIQLACEM 321 (324)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999999764
No 6
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.5e-41 Score=311.93 Aligned_cols=315 Identities=35% Similarity=0.574 Sum_probs=278.7
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
....||.++|+|..|++++|+++.++.+.+++..++.+|++|+||+|+|||++++.+++.+.++.. ...++++++.+..
T Consensus 6 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 6 SLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY-ADGVLELNASDDR 84 (323)
T ss_dssp -CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH-HHHEEEECTTSCC
T ss_pred cccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-cCCEEEecCcccc
Confidence 356799999999999999999999999999999999989999999999999999999999865432 3457788888766
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcc
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 205 (382)
+.+.+++.+..+..... .+..+++++|||||+|.++.+.++.|++++++++.++.||++++.+.++.+++++|
T Consensus 85 ~~~~i~~~~~~~~~~~~-------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 85 GIDVVRNQIKHFAQKKL-------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp SHHHHHTHHHHHHHBCC-------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred ChHHHHHHHHHHHhccc-------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 77777776666542211 11112578999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHH
Q 016800 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285 (382)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~ 285 (382)
|..+.|++++.+++..++..++..+|+.+++++++.+++.++||+|.+++.++..+.. ...|+.++|.++++......+
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~i 236 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG-HGLVNADNVFKIVDSPHPLIV 236 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HSSBCHHHHHHHHTSCCHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988754 367999999999999888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHH
Q 016800 286 EGLFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364 (382)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~-l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~ 364 (382)
++++++ ++..+++.++.+ ++..|+++..++..+..++.....++...+.++++.+.+++++++.|+|+.++++.|+
T Consensus 237 ~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~ 313 (323)
T 1sxj_B 237 KKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASML 313 (323)
T ss_dssp HHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 888877 889999999998 8889999999999998887764448999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 016800 365 SNVIRAVC 372 (382)
Q Consensus 365 ~~l~~~~~ 372 (382)
++++++.+
T Consensus 314 ~~~~~~~~ 321 (323)
T 1sxj_B 314 AKIHKLNN 321 (323)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhcc
Confidence 99998765
No 7
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=5.5e-42 Score=319.00 Aligned_cols=320 Identities=28% Similarity=0.461 Sum_probs=256.3
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHH-HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCC--------------
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK-------------- 113 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l-~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~-------------- 113 (382)
.||++||||.+|++++|++++++.+.+++ ..++.+|++|+||+|+||||+++++++.+.++....
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 48999999999999999999999999999 888888999999999999999999999877654211
Q ss_pred ---------CceEEeecCCCcch--HHHHHHHHHHHHhhhcCCCC-CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh
Q 016800 114 ---------SRVLELNASDDRGI--NVVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181 (382)
Q Consensus 114 ---------~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~ 181 (382)
..++++++.+.... ..+++.+..+.......... ..+ ..++++++||||++.++..+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 12344544332111 13455554443211100000 000 012778999999999999999999999999
Q ss_pred cCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHHHHHHHHHH
Q 016800 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRRAITYLQGA 260 (382)
Q Consensus 182 ~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~gdlr~a~~~l~~~ 260 (382)
++.++.||++|+.+..+.++++|||..++|++++.+++..++..+++++|+.++ +++++.+++.++||+|.+++.++.+
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 998999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHH
Q 016800 261 ARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGD----FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQ 336 (382)
Q Consensus 261 ~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~ 336 (382)
+.+.+..||.+.+ +........++++++++..++ +..+...+.+++..|+++..++..+..++.....++...+
T Consensus 241 ~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~l 318 (354)
T 1sxj_E 241 ALNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNK 318 (354)
T ss_dssp HHTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHH
T ss_pred HHhCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHH
Confidence 8765446776554 222223456788999988754 4556667778888999999999998887766556999999
Q ss_pred HHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 337 ARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 337 ~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
.++++.+++++++++.|.+++++|+.++++++.++
T Consensus 319 ~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~ 353 (354)
T 1sxj_E 319 SSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL 353 (354)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999875
No 8
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=1.2e-39 Score=305.32 Aligned_cols=314 Identities=22% Similarity=0.288 Sum_probs=271.8
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------- 112 (382)
+..||.++|+|..|++++|+++.++.+..++..++.+| ++|+||+|+|||++++.+++.+.|....
T Consensus 2 ~~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp -CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred CcHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 35789999999999999999999999999999999888 8999999999999999999998764321
Q ss_pred -----CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...++++++....+.+.++..+..+..... .++++||||||+|.++.+.++.|++++++++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~ 151 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA----------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCS----------SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEE
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccc----------cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceE
Confidence 113456665544444555554444321111 12678999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++++.+.++.+++++||..+.|++++.+++..++..+++++|+.++++++..+++.++||+|.+.++++++..+.++.
T Consensus 152 ~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 231 (373)
T 1jr3_A 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 (373)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTC
T ss_pred EEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777788
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.++++......++++++++..++...++.++..+...|.++..++..+..+++..
T Consensus 232 i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~ 311 (373)
T 1jr3_A 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 (373)
T ss_dssp BCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHH
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHH
Confidence 9999999999999889999999999999999999999999999999988776665544321
Q ss_pred ------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 ------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 ------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..++..+.+++..++.+.|+++.+|.++++++..
T Consensus 312 ~~~~~a~~~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~ 359 (373)
T 1jr3_A 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 (373)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 357888899999999999999999999999999999999865
No 9
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=5.6e-35 Score=277.10 Aligned_cols=299 Identities=21% Similarity=0.290 Sum_probs=248.3
Q ss_pred chhhhhcCCCCCCcccCcHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.||.++|||.+|++++|+++++ +.+...+..++.++++|+||||||||++|+.+++.+ ...+..+++.. .
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~------~~~f~~l~a~~-~ 86 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA------NADVERISAVT-S 86 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT------TCEEEEEETTT-C
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh------CCCeEEEEecc-C
Confidence 6999999999999999999999 899999999999889999999999999999999987 34567777765 3
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee--cCccccchhhh
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLA 203 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~--~~~~~l~~~l~ 203 (382)
+...++..+......... +++.+|||||+|.++...++.|++.+|+. .+.+|+++ |....+.+++.
T Consensus 87 ~~~~ir~~~~~a~~~~~~----------~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 87 GVKEIREAIERARQNRNA----------GRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp CHHHHHHHHHHHHHHHHT----------TCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHH
T ss_pred CHHHHHHHHHHHHHhhhc----------CCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHh
Confidence 566666666554433221 16789999999999999999999999983 45667666 44467899999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC------CCCCh
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNE-------EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG------SSITS 270 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~------~~It~ 270 (382)
|||.++.|++++.+++..++.+.+.. .++.+++++++.|++.++||+|.+++.|+.++..+. ..||.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~ 234 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKP 234 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCH
Confidence 99999999999999999999999886 556799999999999999999999999999988763 26999
Q ss_pred hhHhhhhCCC----------CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 016800 271 KDLISVSGVI----------PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340 (382)
Q Consensus 271 ~~v~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 340 (382)
++|.+++... +++.+..+++++..++.+.++.|+.+|+..|++|..|.+++.....+ +++.+....+.
T Consensus 235 e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~e--dig~a~p~a~~ 312 (447)
T 3pvs_A 235 ELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASE--DVGNADPRAMQ 312 (447)
T ss_dssp HHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--TTGGGCTHHHH
T ss_pred HHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cccCCChhHHH
Confidence 9999999765 34678889999999999999999999999999999999999887766 78887777777
Q ss_pred HHHHHHhhHhhcCCCh-HHHHHHHHHHHH
Q 016800 341 KCLAEVDKCLVDGADE-YLQLLDVASNVI 368 (382)
Q Consensus 341 ~~~~~~~~~l~~g~~~-~l~l~~l~~~l~ 368 (382)
...+..+.....|.++ ++.|...++-|+
T Consensus 313 ~~~~~~~~~~~~g~pe~~~~l~~~~~~la 341 (447)
T 3pvs_A 313 VAIAAWDCFTRVGPAEGERAIAQAIVYLA 341 (447)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7778888888889754 677777766665
No 10
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.1e-35 Score=268.19 Aligned_cols=280 Identities=17% Similarity=0.149 Sum_probs=227.9
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCC-CcchHHHHHHHHHHHHhhh
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASD-DRGINVVRTKIKTFAAVAV 142 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 142 (382)
||+++++.|.+.+++++.|++||+||||+|||+++.++++... |.. .+.++.++++.+ ..+++.+++.+..+...+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~-~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP-KASDVLEIDPEGENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC-CTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc-cCCCEEEEcCCcCCCCHHHHHHHHHHHhhccc
Confidence 7889999999999999966699999999999999999998632 221 345788888864 6788889887665543222
Q ss_pred cCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHH
Q 016800 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222 (382)
Q Consensus 143 ~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 222 (382)
. ++++|+||||+|.|+.+++|+|+++||+|+++++||++|+++.++.++|+|| .++|++++.+++..|
T Consensus 80 ~----------~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 80 L----------YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDL 147 (305)
T ss_dssp S----------SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHH
T ss_pred c----------CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHH
Confidence 1 2789999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------CCCCChhhHhhhhCCCCHH--HHHHHHHHHh
Q 016800 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-------GSSITSKDLISVSGVIPPE--VVEGLFAVCR 293 (382)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-------~~~It~~~v~~~~~~~~~~--~~~~~~~~~~ 293 (382)
|.+++ + ++++++ ..++||+|.+++.++...... ...-+.++|..+++...+. .++++++++.
T Consensus 148 L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~ 218 (305)
T 2gno_A 148 VKEKI---G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFS 218 (305)
T ss_dssp HHHHH---T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHh---C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 98877 3 566655 557999999999886432210 1111467888888877744 8999999999
Q ss_pred cCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhc---CCChHHHHHHHHHHHH
Q 016800 294 SGDFDLANKEVNNIIA--EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVD---GADEYLQLLDVASNVI 368 (382)
Q Consensus 294 ~~~~~~~~~~l~~l~~--~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---g~~~~l~l~~l~~~l~ 368 (382)
+++..+++..+++|+. .|+++..++..+++.+.....+. ..+.++.++.+++++.. |.++.++|+.+++.++
T Consensus 219 ~~~~~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l~~~~~~~---~~~~l~~~~~~~~~~~~k~~g~~~~lql~~l~~~~~ 295 (305)
T 2gno_A 219 KVESKEFFALFDQVTNTITGKDAFLLIQRLTRIILHENTWE---SVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHR 295 (305)
T ss_dssp HSCGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHTSCCC---SHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhchhh---hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999998 89999999998888877533333 23456688888888888 9999999999999998
Q ss_pred H
Q 016800 369 R 369 (382)
Q Consensus 369 ~ 369 (382)
.
T Consensus 296 ~ 296 (305)
T 2gno_A 296 E 296 (305)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=100.00 E-value=7.3e-34 Score=261.31 Aligned_cols=283 Identities=17% Similarity=0.200 Sum_probs=219.2
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceEEeecC---C
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNAS---D 123 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------------~~~~~~~~~~---~ 123 (382)
+++.++.+.+.+++++.+| +||+||+|+|||++|+++++.+.|.... ..++..+++. .
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 6788899999999999999 9999999999999999999999886531 2456777764 4
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhh
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 203 (382)
..+++.+++.+..+...+. .++++|+||||+|.|+.+++|+|++++|+|+.++.||++|+.+.+++++|+
T Consensus 87 ~~~i~~ir~l~~~~~~~~~----------~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHAR----------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCT----------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred CCCHHHHHHHHHHHhhccc----------cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 5677888876655432221 127899999999999999999999999999999999999999999999999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHH
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPE 283 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~ 283 (382)
|||+.+.|++++.+++.+||..++ .++++++..+++.++||+|.++++++..... ...++.+.+..+... .
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~-~~~~~~~~~~~~~~~---~ 227 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQ-ARETLCQALAYSVPS---G 227 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHH-HHHHHHHHHHHHHHH---C
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHH-HHHHHHHHHHHHHhC---h
Confidence 999999999999999999997654 5789999999999999999999999876532 123444555554431 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH----HHHHcCCCH-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhh--c
Q 016800 284 VVEGLFAVCRSGDFDLANKEVN----NIIAEGYPA-----SLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLV--D 352 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~----~l~~~g~~~-----~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ 352 (382)
.+..+++.+.+.+....+.++. +++...... .+....+..... .++...+.++++.+.+++++++ .
T Consensus 228 ~~~~~~~~l~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a~---~~~~~~l~~~~~~l~~~~~~l~~~~ 304 (334)
T 1a5t_A 228 DWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELAN---HLSPSRLQAILGDVCHIREQLMSVT 304 (334)
T ss_dssp CCGGGHHHHCSTTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 1224556666667766655544 444322111 112223333222 4899999999999999999999 8
Q ss_pred CCChHHHHHHHHHHHHHH
Q 016800 353 GADEYLQLLDVASNVIRA 370 (382)
Q Consensus 353 g~~~~l~l~~l~~~l~~~ 370 (382)
|+|+++++|.+++++++.
T Consensus 305 ~~n~~l~le~ll~~l~~~ 322 (334)
T 1a5t_A 305 GINRELLITDLLLRIEHY 322 (334)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999876
No 12
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=100.00 E-value=4.4e-33 Score=257.63 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=233.6
Q ss_pred HHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCC
Q 016800 73 LTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (382)
Q Consensus 73 l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (382)
+.+.++ ++.+| +||+||+|+||++.+..+++.+.+.+.....+++++. . ..+++.+......+..+
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~~~~~plf~------- 75 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--N---TDWNAIFSLCQAMSLFA------- 75 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT--T---CCHHHHHHHHHHHHHCC-------
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC--C---CCHHHHHHHhcCcCCcc-------
Confidence 445555 45555 9999999999999999999988765432223444543 2 23344333333333332
Q ss_pred CCCCcEEEEEeCCCC-CCHHHHHHHHHHHHhcCCceEEEEeecCc------cccchhhhcccceEEecCCCHHHHHHHHH
Q 016800 152 PCPPYKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNYI------SRIIEPLASRCAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 152 ~~~~~~vliiDe~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~------~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 224 (382)
+++||+|||++. ++.+++++|++++|+|++++.||++++.. .++.++|.|||.+++|.+++.+++..|+.
T Consensus 76 ---~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 76 ---SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp ---SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred ---CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 789999999999 99999999999999999999999998763 46889999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 016800 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKE 303 (382)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (382)
++++++|+.++++++..+++.++||++.+.+.+++++.+. ++.||.++|.++++......++++++++..++..+++.+
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~ 232 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999876 568999999999887777789999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHh---------------------------------cCCCCHHHHHHHHHHHHHHhhHh
Q 016800 304 VNNIIAEGYPASLLLSQLFDVVVE---------------------------------TEDISDEQQARICKCLAEVDKCL 350 (382)
Q Consensus 304 l~~l~~~g~~~~~i~~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~l 350 (382)
+.++...|.+|..++..+.++++. ...++...+.+++..+.+++..+
T Consensus 233 l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~l 312 (343)
T 1jr3_D 233 LQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTL 312 (343)
T ss_dssp HTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999988899998877765444432 13477888999999999999999
Q ss_pred hcCC--ChHHHHHHHHHHHHH
Q 016800 351 VDGA--DEYLQLLDVASNVIR 369 (382)
Q Consensus 351 ~~g~--~~~l~l~~l~~~l~~ 369 (382)
+.|. ++++.||.++++++.
T Consensus 313 K~~~~~~~~~~le~l~l~l~~ 333 (343)
T 1jr3_D 313 KQDYGQSVWAELEGLSLLLCH 333 (343)
T ss_dssp HHSSCSCHHHHHHHHHHHTTS
T ss_pred hCCCCCCHHHHHHHHHHHHcC
Confidence 9984 788999999999875
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.97 E-value=1.1e-29 Score=219.98 Aligned_cols=222 Identities=52% Similarity=0.889 Sum_probs=191.2
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
...||.++|+|..|++++|+++.++.+..++..+..++++|+||+|+|||++++.+++.+.+.. ....++.+++....+
T Consensus 3 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERG 81 (226)
T ss_dssp -CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTC
T ss_pred chhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccC
Confidence 5679999999999999999999999999999998887899999999999999999999875443 234567788777666
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
...+...+..+..... ...+++.+|+|||++.++.+.++.|++++++++..+.+|++++.+..+.+++.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 82 IDVVRHKIKEFARTAP--------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHHHHHHHHTSCC--------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred hHHHHHHHHHHhcccC--------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 6666655555442211 11226789999999999999999999999998889999999999999999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhC
Q 016800 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~ 278 (382)
..+.|++++.+++..++..++...+..++++++..+++.++||+|.+++.++.++..+ ..||.++|+++++
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~-~~I~~~~v~~~~~ 224 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG-EVVDADTIYQITA 224 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SCBCHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-ceecHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988764 7899999988765
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.97 E-value=1.5e-28 Score=215.93 Aligned_cols=223 Identities=26% Similarity=0.377 Sum_probs=181.9
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------ 112 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------ 112 (382)
.+..||.++|+|..|++++|++..++.+..++..++.++ ++|+||+|+|||++++.+++.+.+....
T Consensus 8 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 8 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp ---CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred hHHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 356799999999999999999999999999999988776 8999999999999999999988653211
Q ss_pred ------CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCce
Q 016800 113 ------KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (382)
Q Consensus 113 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~ 186 (382)
...+..++.........++..+..+... ...+++.+|+|||+|.++.+.++.|++.+++++..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~ 157 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 157 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCS----------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTE
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhc----------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCce
Confidence 0123444444333333333332221100 011256899999999999999999999999988889
Q ss_pred EEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 016800 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~ 266 (382)
.+|++++....+.+++.+|+..+.|++++.+++.+++..++...+..+++++++.+++.++|++|.+.++++.+.....+
T Consensus 158 ~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~ 237 (250)
T 1njg_A 158 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 237 (250)
T ss_dssp EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS
T ss_pred EEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999988876667
Q ss_pred CCChhhHhhhhC
Q 016800 267 SITSKDLISVSG 278 (382)
Q Consensus 267 ~It~~~v~~~~~ 278 (382)
.||.++|+++++
T Consensus 238 ~i~~~~v~~~~~ 249 (250)
T 1njg_A 238 QVSTQAVSAMLG 249 (250)
T ss_dssp SBCHHHHHHHSC
T ss_pred eecHHHHHHHhC
Confidence 899999988764
No 15
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.95 E-value=4.1e-27 Score=228.44 Aligned_cols=240 Identities=25% Similarity=0.359 Sum_probs=181.8
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcC-----------------CCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----------------NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------------~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
....+|++||+|.+|++++|+++.++.+..++... ..+++||+||||+|||++|+++++.+
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-- 101 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-- 101 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--
Confidence 45679999999999999999999999999998751 23459999999999999999999998
Q ss_pred CCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC-----CCCCCcEEEEEeCCCCCCHHHH---HHHHHHHH
Q 016800 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG-----YPCPPYKIIILDEADSMTEDAQ---NALRRTME 180 (382)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~vliiDe~d~l~~~~~---~~Ll~~le 180 (382)
+..++++++++......+...+........... .... ...+++.||||||+|.++...+ +.|+++++
T Consensus 102 ----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~ 176 (516)
T 1sxj_A 102 ----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVG-YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR 176 (516)
T ss_dssp ----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTT-TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH
T ss_pred ----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHH-HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH
Confidence 467888998876655444333222111000000 0000 0123678999999999976443 78888888
Q ss_pred hcCCceEEEEeecCcc-ccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016800 181 TYSKVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (382)
Q Consensus 181 ~~~~~~~~Il~~~~~~-~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~ 259 (382)
+... .+|++++... ..++++.+||..+.|++|+.+++..++..++..+++.++++++..|++.++||+|.+++.++.
T Consensus 177 ~~~~--~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 177 KTST--PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp HCSS--CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred hcCC--CEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 7543 4666666543 455779999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCChhhHhhhhC---CCCHHHHHHHHHHHhcC
Q 016800 260 AARLFGSSITSKDLISVSG---VIPPEVVEGLFAVCRSG 295 (382)
Q Consensus 260 ~~~~~~~~It~~~v~~~~~---~~~~~~~~~~~~~~~~~ 295 (382)
++.. +..|+.+++.+++. ......++++++.+..+
T Consensus 255 ~~~~-~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~ 292 (516)
T 1sxj_A 255 ISTT-TKTINHENINEISKAWEKNIALKPFDIAHKMLDG 292 (516)
T ss_dssp HHHH-SSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBG
T ss_pred HHhc-CCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcC
Confidence 7653 57899999887764 33334566777777663
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.94 E-value=4.9e-25 Score=203.27 Aligned_cols=210 Identities=18% Similarity=0.217 Sum_probs=165.8
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
.....|.++|+|.+|++++|++..++.+..++.. ...++++|+||||||||++|+++++.+ ...++.++
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~------~~~~~~~~ 87 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM------SANIKTTA 87 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT------TCCEEEEE
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEec
Confidence 4556899999999999999999999999888864 344569999999999999999999987 34567777
Q ss_pred cCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC----------------
Q 016800 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK---------------- 184 (382)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~---------------- 184 (382)
+........+...+.. . +...+|+|||++.++.+.++.|+..+++...
T Consensus 88 ~~~~~~~~~~~~~~~~-------~---------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 88 APMIEKSGDLAAILTN-------L---------SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp GGGCCSHHHHHHHHHT-------C---------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred chhccchhHHHHHHHh-------c---------cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 7654444433333221 1 1557999999999999999999999997531
Q ss_pred --ceEEEEeecCccccchhhhccc-ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 185 --VTRFFFICNYISRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 185 --~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
.+.+|.++|....+.+++++|+ ..+.|++|+.+++..++...+...+..+++++++.++..++||+|.+.+.++.+.
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3678889999889999999999 5899999999999999999999999889999999999999999999999999875
Q ss_pred Hhc----CCCCChhhHhhhh
Q 016800 262 RLF----GSSITSKDLISVS 277 (382)
Q Consensus 262 ~~~----~~~It~~~v~~~~ 277 (382)
..+ +..|+.+++..++
T Consensus 232 ~~a~~~~~~~i~~~~~~~~~ 251 (338)
T 3pfi_A 232 DFADVNDEEIITEKRANEAL 251 (338)
T ss_dssp HHHHHTTCSEECHHHHHHHH
T ss_pred HHHHhhcCCccCHHHHHHHH
Confidence 443 3558877776554
No 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.93 E-value=2.3e-24 Score=201.09 Aligned_cols=223 Identities=21% Similarity=0.262 Sum_probs=167.7
Q ss_pred CCchhhhhcCCCC-CCcccCcHHHHHH---HHHHHHcCCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 47 SSQPWVEKYRPKQ-VKDVAHQEEVVRV---LTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 47 ~~~~~~~k~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
...++.++++|.. |++++|++..+.. +...+..+..+ ++||+||||+|||++|+++++.+.+. ..++.++
T Consensus 29 ~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----~~~~~~~ 104 (368)
T 3uk6_A 29 RGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD----TPFTAIA 104 (368)
T ss_dssp CSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS----CCEEEEE
T ss_pred hccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc----CCccccc
Confidence 4567789999988 9999999998765 56666777665 59999999999999999999998532 1223333
Q ss_pred cCC-------------------------------------------------------CcchHHHHHHHHHHHHhhhcCC
Q 016800 121 ASD-------------------------------------------------------DRGINVVRTKIKTFAAVAVGSG 145 (382)
Q Consensus 121 ~~~-------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~ 145 (382)
+.. ......++..+..........+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g 184 (368)
T 3uk6_A 105 GSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEG 184 (368)
T ss_dssp GGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhc
Confidence 211 0002233333333222111110
Q ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec------------CccccchhhhcccceEEecC
Q 016800 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKP 213 (382)
Q Consensus 146 ~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~ 213 (382)
.....+.||+|||+|.++.+.++.|++.++++...+ ++++++ .+..+.+++++||..+.|++
T Consensus 185 -----~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~ 258 (368)
T 3uk6_A 185 -----KAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTP 258 (368)
T ss_dssp -----C---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECC
T ss_pred -----cccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecC
Confidence 000013599999999999999999999999887665 444443 35678899999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCC
Q 016800 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQ-GDLRRAITYLQGAARLF----GSSITSKDLISVSGV 279 (382)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~-gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~ 279 (382)
|+.+++..++..++...++.+++++++.+++.+. ||+|.++++++.+...+ ...||.++|.+++..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999987664 457999998887653
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.92 E-value=1.1e-23 Score=193.00 Aligned_cols=206 Identities=22% Similarity=0.268 Sum_probs=164.0
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
|.++|+|.+|++++|++..+..+..++.. ....+++|+||+|||||++|+++++.+. ..+..+++....
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~------~~~~~~~~~~~~ 75 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG------VNLRVTSGPAIE 75 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT------CCEEEECTTTCC
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeccccC
Confidence 56889999999999999999888887753 2334599999999999999999999873 455667766544
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CceE
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTR 187 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~~~~ 187 (382)
....+...+.. .. +...+|+|||++.++...++.|+..+++.. ..+.
T Consensus 76 ~~~~l~~~l~~----~~-----------~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 76 KPGDLAAILAN----SL-----------EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp SHHHHHHHHTT----TC-----------CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ChHHHHHHHHH----hc-----------cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 43333222111 00 155699999999999999999999999753 3467
Q ss_pred EEEeecCccccchhhhccc-ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--
Q 016800 188 FFFICNYISRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-- 264 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-- 264 (382)
+|+++|....+.+++.+|+ .++.|++|+.+++..++...+...+..+++++++.++..++|++|.+.+.++.+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 220 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQV 220 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 8889999889999999999 4999999999999999999998889999999999999999999999999998876554
Q ss_pred --CCCCChhhHhhhh
Q 016800 265 --GSSITSKDLISVS 277 (382)
Q Consensus 265 --~~~It~~~v~~~~ 277 (382)
...|+.+++..+.
T Consensus 221 ~~~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 221 AGEEVITRERALEAL 235 (324)
T ss_dssp TSCSCCCHHHHHHHH
T ss_pred hcCCCCCHHHHHHHH
Confidence 3467777765543
No 19
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=2.4e-23 Score=199.12 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=110.4
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee---------cC----ccccchhhhcccceEEecCCCHHHHHHHH
Q 016800 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC---------NY----ISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 157 ~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~---------~~----~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
+|++|||+|.|+.+++++|++.+|+|+.. .||+.+ .. +..++++++|||+.+.|++++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999888 577777 43 67899999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCCC
Q 016800 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVSGVI 280 (382)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~~ 280 (382)
..++..+++.++++++..++..+ +|++|.++++++.+...+ ...|+.++|.++.+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999 999999999999875444 3679999998877543
No 20
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.91 E-value=9e-23 Score=187.37 Aligned_cols=216 Identities=19% Similarity=0.255 Sum_probs=160.6
Q ss_pred ccccccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcC-----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc
Q 016800 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115 (382)
Q Consensus 41 ~~~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~ 115 (382)
|.|+..-...|.++++|.+|++++|++.++..+...+..+ ...+++|+||||+||||++++++..+.+ .
T Consensus 5 ~~~~~~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~------~ 78 (334)
T 1in4_A 5 LTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT------N 78 (334)
T ss_dssp ------------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC------C
T ss_pred cccchHHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------C
Confidence 4455555667899999999999999999999888877653 3356999999999999999999999843 2
Q ss_pred eEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------
Q 016800 116 VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------ 183 (382)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------ 183 (382)
+...++........+...+.. . . ...|++|||++.+++..++.|+..++...
T Consensus 79 ~~~~sg~~~~~~~~l~~~~~~-----~-~----------~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~ 142 (334)
T 1in4_A 79 IHVTSGPVLVKQGDMAAILTS-----L-E----------RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAK 142 (334)
T ss_dssp EEEEETTTCCSHHHHHHHHHH-----C-C----------TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------
T ss_pred EEEEechHhcCHHHHHHHHHH-----c-c----------CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccc
Confidence 223333322222223222111 0 0 45699999999999988888888887542
Q ss_pred ------CceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 016800 184 ------KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (382)
Q Consensus 184 ------~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~ 256 (382)
+...++..++.+..+.+.+++||. .+.|++++.+++.++|.+.++..++.++++++..|++.++|++|.+.++
T Consensus 143 ~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 143 SIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp ------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred cccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 124566677888899999999997 6899999999999999999988899999999999999999999999999
Q ss_pred HHHHHHhc----CCCCChhhHhhhhC
Q 016800 257 LQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 257 l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
++.+..++ ...||.+++++++.
T Consensus 223 l~~~~~~a~~~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 223 TKRVRDMLTVVKADRINTDIVLKTME 248 (334)
T ss_dssp HHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 98776544 35789888877663
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.90 E-value=2.4e-23 Score=182.42 Aligned_cols=212 Identities=12% Similarity=0.171 Sum_probs=164.7
Q ss_pred cCCchhhhhcCC-CCCCcccC---cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 46 QSSQPWVEKYRP-KQVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 46 ~~~~~~~~k~~p-~~~~~~~g---~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
....+|..+++| .+|+++++ ++.++..+..++..+..++++|+||+|+|||++++.+++.+... ...+..+++
T Consensus 12 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~ 88 (242)
T 3bos_A 12 PLQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPL 88 (242)
T ss_dssp -CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred hhhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEH
Confidence 356789999999 79999997 36788888888887766679999999999999999999988543 234555655
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCc--eEEEEeecCcc-
Q 016800 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYSKV--TRFFFICNYIS- 196 (382)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~--~~~Ll~~le~~~~~--~~~Il~~~~~~- 196 (382)
.+... .+...+..+ .+..+|+|||++.+.... ++.|+.+++..... ..+|++++...
T Consensus 89 ~~~~~--~~~~~~~~~----------------~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 89 GIHAS--ISTALLEGL----------------EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPM 150 (242)
T ss_dssp GGGGG--SCGGGGTTG----------------GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTT
T ss_pred HHHHH--HHHHHHHhc----------------cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHH
Confidence 43211 000001000 145799999999997655 88888888765432 24777776443
Q ss_pred ---ccchhhhccc---ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCC
Q 016800 197 ---RIIEPLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSS 267 (382)
Q Consensus 197 ---~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~ 267 (382)
.+.+.+.+|+ ..+.|++++.++...++...+...++.+++++++.+++.++||+|.+.+.++.+..++ +..
T Consensus 151 ~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~ 230 (242)
T 3bos_A 151 EAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRK 230 (242)
T ss_dssp TTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4568999999 7999999999999999999999899999999999999999999999999999887765 567
Q ss_pred CChhhHhhhhC
Q 016800 268 ITSKDLISVSG 278 (382)
Q Consensus 268 It~~~v~~~~~ 278 (382)
||.+++++++.
T Consensus 231 It~~~v~~~l~ 241 (242)
T 3bos_A 231 LTIPFVKEMLR 241 (242)
T ss_dssp CCHHHHHHHHT
T ss_pred CcHHHHHHHhh
Confidence 99998887653
No 22
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.89 E-value=5.1e-21 Score=179.67 Aligned_cols=230 Identities=19% Similarity=0.247 Sum_probs=168.4
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
.+....+|..+|+| ++++|+++.++.+..++.. ... ++++|+||+|+|||++++.+++.+.+.. ...++
T Consensus 3 i~~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~ 77 (389)
T 1fnn_A 3 IVVDDSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFV 77 (389)
T ss_dssp CBSCGGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEE
T ss_pred cccCHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEE
Confidence 34667889999999 7799999999888888765 232 3699999999999999999999885432 34677
Q ss_pred EeecCCCcch-HHHHHHHHHHHHhhhcCCCCCCC---------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC----
Q 016800 118 ELNASDDRGI-NVVRTKIKTFAAVAVGSGQRRGG---------YPCPPYKIIILDEADSMTEDAQNALRRTMETYS---- 183 (382)
Q Consensus 118 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---- 183 (382)
.+++...... ..+...+..+.......+..... ...+++.+|+|||++.++.+.++.|++.+++.+
T Consensus 78 ~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 78 YINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp EEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSS
T ss_pred EEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCc
Confidence 7886554332 22222221110000000000000 001256799999999999999999999997654
Q ss_pred CceEEEEeecCc---cccchhhhcccc--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhc---------C
Q 016800 184 KVTRFFFICNYI---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSIS---------Q 247 (382)
Q Consensus 184 ~~~~~Il~~~~~---~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~s---------~ 247 (382)
..+.+|++++.+ ..+.+.+.+|+. .+.|+|++.+++..++...+... ...+++++++.+++.+ +
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNR 237 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTS
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCC
Confidence 477888888877 567888999987 69999999999999999988762 2368999999999999 8
Q ss_pred CCHHHHHHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 248 GDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 248 gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
||+|.+++.++.++..+ ...|+.+++..+..
T Consensus 238 G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 238 GDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 99999999999877654 35688888877654
No 23
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.88 E-value=3.4e-20 Score=173.83 Aligned_cols=244 Identities=20% Similarity=0.234 Sum_probs=174.1
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCce
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRV 116 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~ 116 (382)
.+....+|..+|.| ++++|+++.+..+..++.. +..++++|+||+|+|||++++.+++.+.... .....+
T Consensus 5 ~f~~~~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 81 (387)
T 2v1u_A 5 IFRKRWVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKP 81 (387)
T ss_dssp SBSCHHHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhhCHHhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 34566778888888 7889999999999988854 3444599999999999999999999873210 013567
Q ss_pred EEeecCCCcchHHH-HHHHH------------------HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--HHHHH
Q 016800 117 LELNASDDRGINVV-RTKIK------------------TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNAL 175 (382)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~l~------------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--~~~~L 175 (382)
+.+++........+ ...+. .+..... ..+++.+|+|||+|.+... .++.|
T Consensus 82 ~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---------~~~~~~vlilDEi~~l~~~~~~~~~l 152 (387)
T 2v1u_A 82 IYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---------RLRGIYIIVLDEIDFLPKRPGGQDLL 152 (387)
T ss_dssp EEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---------TSCSEEEEEEETTTHHHHSTTHHHHH
T ss_pred EEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---------ccCCeEEEEEccHhhhcccCCCChHH
Confidence 77887654332211 11111 1111100 0125679999999999876 77888
Q ss_pred HHHHHhc-----CCceEEEEeecCc---cccchhhhccc--ceEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHH
Q 016800 176 RRTMETY-----SKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLS 243 (382)
Q Consensus 176 l~~le~~-----~~~~~~Il~~~~~---~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~ 243 (382)
..+++.. +..+.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++..++...+.. .+..+++++++.++
T Consensus 153 ~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~ 232 (387)
T 2v1u_A 153 YRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCA 232 (387)
T ss_dssp HHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHH
T ss_pred HhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 8887754 4567788888876 67889999999 58999999999999999998875 45678999999999
Q ss_pred HhcC---CCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHH
Q 016800 244 SISQ---GDLRRAITYLQGAARLF----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANK 302 (382)
Q Consensus 244 ~~s~---gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (382)
+.++ ||+|.+++.++.++..+ ...|+.+++..+..... ...+.+.+..-+..+..-
T Consensus 233 ~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~---~~~~~~~~~~l~~~~~~~ 295 (387)
T 2v1u_A 233 ALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE---RDRVSEVVRTLPLHAKLV 295 (387)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH---HHHHHHHHHSSCHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh---hchHHHHHHcCCHHHHHH
Confidence 9998 99999999999887654 26799999988775321 223444455555544333
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.87 E-value=2e-20 Score=175.45 Aligned_cols=197 Identities=20% Similarity=0.241 Sum_probs=149.7
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCce
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~ 116 (382)
..|.++++|.+|++++|++.+++.+..++.. ....++||+||||||||++|+++++.+ +..+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~------~~~~ 176 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES------NATF 176 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEE
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh------cCcE
Confidence 3689999999999999999999999888732 123459999999999999999999987 4567
Q ss_pred EEeecCCCcch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC-----------CHHHHHHHHHHHHhc-
Q 016800 117 LELNASDDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETY- 182 (382)
Q Consensus 117 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l-----------~~~~~~~Ll~~le~~- 182 (382)
+.+++.+.... ......+.......... ...||+|||+|.+ ....++.|+..++..
T Consensus 177 ~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 177 FNISAASLTSKYVGEGEKLVRALFAVAREL----------QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp EEECSCCC-------CHHHHHHHHHHHHHS----------SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred EEeeHHHhhccccchHHHHHHHHHHHHHhc----------CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 88887654321 11111222222221111 4579999999988 344567788888743
Q ss_pred ---CCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 016800 183 ---SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (382)
Q Consensus 183 ---~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~ 258 (382)
+..++||.++|.+..+.+.+.+||. .+.|+.|+.++...++..++...+..++++.+..++..+.|..+..+..|.
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3457788889999999999999997 799999999999999999999888899999999999999998887665554
Q ss_pred HHH
Q 016800 259 GAA 261 (382)
Q Consensus 259 ~~~ 261 (382)
..+
T Consensus 327 ~~a 329 (389)
T 3vfd_A 327 KDA 329 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.87 E-value=4.7e-20 Score=166.73 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=146.7
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
.|.+++.|.+|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+ ...++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~------~~~~~ 83 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC------SATFL 83 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT------TCEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeE
Confidence 467788899999999999999999887743 123349999999999999999999987 34566
Q ss_pred EeecCCCcc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH
Q 016800 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME 180 (382)
Q Consensus 118 ~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le 180 (382)
.+++.+... ...++..+.... .. .+.+|+|||+|.+. ...++.|+..++
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~----~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 149 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVAR----HM----------QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD 149 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHH----HT----------CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHH----Hc----------CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh
Confidence 677654321 122222222111 11 55799999998873 455678888888
Q ss_pred hcC-----CceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH
Q 016800 181 TYS-----KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 181 ~~~-----~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~ 254 (382)
..+ ..+.+|.+||.+..+.+++.+||. .+.++.|+.++...++...+...+..++++.+..+++.+.|..+..+
T Consensus 150 ~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l 229 (297)
T 3b9p_A 150 GLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDL 229 (297)
T ss_dssp HCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHH
T ss_pred cccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 765 347788889999999999999996 88999999999999999999888888999999999999999887666
Q ss_pred -HHHHHHH
Q 016800 255 -TYLQGAA 261 (382)
Q Consensus 255 -~~l~~~~ 261 (382)
++++.++
T Consensus 230 ~~l~~~a~ 237 (297)
T 3b9p_A 230 TALAKDAA 237 (297)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 4444443
No 26
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.86 E-value=1.1e-19 Score=170.45 Aligned_cols=294 Identities=20% Similarity=0.189 Sum_probs=186.4
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CC-CC
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LY-KS 114 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~-~~ 114 (382)
.+.+..+|..+|+| ++++|+++.++.+..++.. +..++++|+||+|+|||++++.+++.+.... .. ..
T Consensus 6 i~~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 82 (384)
T 2qby_B 6 IKNPKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDV 82 (384)
T ss_dssp -CCTTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTC
T ss_pred ccccHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 44678899999999 7889999999888776654 3344599999999999999999999873210 01 35
Q ss_pred ceEEeecCCCc-ch-HHHHHHHHHHHHhhhcC-CCCCC--------CCCCCCcEEEEEeCCCCCCHHH-HHH-HHHHHHh
Q 016800 115 RVLELNASDDR-GI-NVVRTKIKTFAAVAVGS-GQRRG--------GYPCPPYKIIILDEADSMTEDA-QNA-LRRTMET 181 (382)
Q Consensus 115 ~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~-~~~~~--------~~~~~~~~vliiDe~d~l~~~~-~~~-Ll~~le~ 181 (382)
.++.+++.... .. ..+...+..+....... +.... .... ...+|+|||+|.+.... ++. +..+++.
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~ 161 (384)
T 2qby_B 83 KQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRS 161 (384)
T ss_dssp EEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTS
T ss_pred eEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcC
Confidence 66777765322 11 11122222110000000 00000 0001 22399999999986543 555 5555555
Q ss_pred cCCceEEEEeecCc---cccchhhhccc-ceEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHhcC---CCHHH
Q 016800 182 YSKVTRFFFICNYI---SRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSSISQ---GDLRR 252 (382)
Q Consensus 182 ~~~~~~~Il~~~~~---~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~s~---gdlr~ 252 (382)
. ..+.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++..++..++.. .+..+++++++.+++.++ ||+|.
T Consensus 162 ~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~ 240 (384)
T 2qby_B 162 D-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARK 240 (384)
T ss_dssp S-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHH
T ss_pred C-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHH
Confidence 4 677889998876 67889999995 69999999999999999998865 345689999999999998 99999
Q ss_pred HHHHHHHHHHhc--CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--c
Q 016800 253 AITYLQGAARLF--GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE--T 328 (382)
Q Consensus 253 a~~~l~~~~~~~--~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--~ 328 (382)
+++.++.++..+ ...|+.+++..++..... ..+.+.+..-+..+ ..++..+.. +.....+.......+.. .
T Consensus 241 a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~---~~~~~~~~~l~~~~-~~~l~al~~-~~~~~~~~~~~~~~~~~~g~ 315 (384)
T 2qby_B 241 AVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ---ERLIEAVKALPFHY-KLALRSLIE-SEDVMSAHKMYTDLCNKFKQ 315 (384)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH---HHHHHHHHSSCHHH-HHHHHHHHT-CCBHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc---chHHHHHHcCCHHH-HHHHHHHHH-hcccChHHHHHHHHHHHcCC
Confidence 999999888766 257999999887753322 22334444434333 334444443 22212222222222221 1
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 016800 329 EDISDEQQARICKCLAEVD 347 (382)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~ 347 (382)
...+.....+++..+.+..
T Consensus 316 ~~~~~~~~~~~l~~L~~~g 334 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFG 334 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 2355566666666665543
No 27
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.86 E-value=1.8e-20 Score=171.23 Aligned_cols=197 Identities=20% Similarity=0.202 Sum_probs=146.8
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHH----------cC-CC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCce
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLE----------TA-NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~----------~~-~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~ 116 (382)
..|..++.+.+|++++|++.+++.+..++. .+ .. .++||+||||||||++|+++++.+ +..+
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~ 79 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTF 79 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH------TCEE
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH------CCCE
Confidence 346778888899999999999999988872 12 22 249999999999999999999997 3566
Q ss_pred EEeecCCCc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHh--
Q 016800 117 LELNASDDR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMET-- 181 (382)
Q Consensus 117 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~-- 181 (382)
+.+++.+.. ........+.......... .+.||+|||+|.+.. ..++.|+..++.
T Consensus 80 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 80 FSVSSSDLVSKWMGESEKLVKQLFAMAREN----------KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp EEEEHHHHHTTTGGGHHHHHHHHHHHHHHT----------SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred EEEchHHHhhcccchHHHHHHHHHHHHHhc----------CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence 777764321 1111222232222222111 457999999998853 346788888874
Q ss_pred -cCCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 016800 182 -YSKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (382)
Q Consensus 182 -~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~ 258 (382)
....+.+|.+||.+..+.+++++|+. .+.|++|+.++...+++..+...+..+++..+..|++.+.| +.+.+.++++
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34567788889999999999999996 78999999999999999999887777899999999999977 4555555555
Q ss_pred HHH
Q 016800 259 GAA 261 (382)
Q Consensus 259 ~~~ 261 (382)
.++
T Consensus 230 ~a~ 232 (322)
T 3eie_A 230 DAL 232 (322)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=3e-20 Score=168.98 Aligned_cols=188 Identities=23% Similarity=0.234 Sum_probs=144.1
Q ss_pred cccCcHHHHHHHHHHHH---------------cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceEEeecCCCc
Q 016800 62 DVAHQEEVVRVLTNTLE---------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDDR 125 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---------------~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~-~~~~~~~~~~~~~~ 125 (382)
+++|++++++.+..++. .....+++|+||||||||++|+++++.+.+... ....++.+++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 79999999988887664 223335999999999999999999998854332 12356677665421
Q ss_pred c--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 126 G--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 126 ~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
. .......+....... ...+|+|||+|.+ +...++.|++.+++++..+.+|++++.
T Consensus 112 ~~~~g~~~~~~~~~~~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA-------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH-------------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred hhcccccHHHHHHHHHhc-------------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 1 111111122221111 2359999999977 788999999999999888889999875
Q ss_pred cc-----ccchhhhccc-ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHHH
Q 016800 195 IS-----RIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQGA 260 (382)
Q Consensus 195 ~~-----~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~gdlr~a~~~l~~~ 260 (382)
.. .+.+++++|+ ..+.|++|+.+++..++..++...+..++++++..+++. ..||+|.+.+.++.+
T Consensus 179 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 179 DRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 42 3468999999 699999999999999999999999999999999999886 359999999999988
Q ss_pred HH
Q 016800 261 AR 262 (382)
Q Consensus 261 ~~ 262 (382)
..
T Consensus 259 ~~ 260 (309)
T 3syl_A 259 RL 260 (309)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 29
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.84 E-value=8.5e-20 Score=168.72 Aligned_cols=198 Identities=20% Similarity=0.206 Sum_probs=140.0
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCce
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~ 116 (382)
..+..++.+.+|++++|++.+++.+...+.. ...+ ++||+||||||||++|+++++.+ ...+
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~------~~~~ 112 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTF 112 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH------TCEE
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCE
Confidence 3456678889999999999999999887631 1222 49999999999999999999998 3456
Q ss_pred EEeecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhc-
Q 016800 117 LELNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY- 182 (382)
Q Consensus 117 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~- 182 (382)
+.+++.+... .......+.......... .+.||+|||+|.+.. ...+.|+..++..
T Consensus 113 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~----------~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 113 FSVSSSDLVSKWMGESEKLVKQLFAMAREN----------KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp EEEEHHHHHSCC---CHHHHHHHHHHHHHT----------SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC
T ss_pred EEeeHHHHhhhhcchHHHHHHHHHHHHHHc----------CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc
Confidence 6666543110 111111222222211111 557999999999863 3467888888743
Q ss_pred --CCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 016800 183 --SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (382)
Q Consensus 183 --~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~ 258 (382)
...+.||.+||.+..+.+++++|+. .+.+++|+.++...++...+...+..+++..++.|++.+.| +.+.+.++++
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567788899999999999999996 88999999999999999998877777889999999999988 5555556665
Q ss_pred HHHH
Q 016800 259 GAAR 262 (382)
Q Consensus 259 ~~~~ 262 (382)
.++.
T Consensus 263 ~A~~ 266 (355)
T 2qp9_X 263 DALM 266 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 30
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.7e-19 Score=166.90 Aligned_cols=195 Identities=18% Similarity=0.197 Sum_probs=144.9
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEE
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~ 118 (382)
+.+++.|.+|++++|++.+++.+...+.. + ...++||+||||||||++|+++++.+ ...++.
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~~ 147 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS------GATFFS 147 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT------TCEEEE
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc------CCeEEE
Confidence 45677889999999999999999888752 2 23349999999999999999999987 356677
Q ss_pred eecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh----
Q 016800 119 LNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET---- 181 (382)
Q Consensus 119 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~---- 181 (382)
+++.+... .......+.......... .+.+|+|||+|.+. ...++.|+..++.
T Consensus 148 i~~~~l~~~~~g~~~~~~~~~~~~a~~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 148 ISASSLTSKWVGEGEKMVRALFAVARCQ----------QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp EEGGGGCCSSTTHHHHHHHHHHHHHHHT----------CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred EehHHhhccccchHHHHHHHHHHHHHhc----------CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence 77754321 111112222222211111 56799999998773 2346677877774
Q ss_pred cCCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q 016800 182 YSKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQG 259 (382)
Q Consensus 182 ~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~ 259 (382)
....+.||.+||.+..+.+++++|+. .+.++.|+.++...++...+...+..++++.+..++..+.| ..+.+..++..
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34567788889999999999999998 78999999999999999999888888999999999999988 44444445554
Q ss_pred HH
Q 016800 260 AA 261 (382)
Q Consensus 260 ~~ 261 (382)
++
T Consensus 298 a~ 299 (357)
T 3d8b_A 298 AS 299 (357)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 31
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.84 E-value=9.9e-19 Score=163.71 Aligned_cols=220 Identities=18% Similarity=0.260 Sum_probs=157.2
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEe
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~ 119 (382)
.+....+|..+|.| ++++|+++.++.+..++.. +...+++|+||+|+|||++++.+++.+.........++.+
T Consensus 6 i~~~~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 6 IFINREYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CBSCGGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred cccchhhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 34566778888888 6789999999999988874 3344599999999999999999999873211002345666
Q ss_pred ecCCCcc----------------------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC----HHHHH
Q 016800 120 NASDDRG----------------------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT----EDAQN 173 (382)
Q Consensus 120 ~~~~~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~----~~~~~ 173 (382)
++..... ...+...+..... .. +.+.+|+|||++.+. .+...
T Consensus 83 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~---------~~~~vlilDE~~~l~~~~~~~~l~ 150 (386)
T 2qby_A 83 NTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---DY---------GSQVVIVLDEIDAFVKKYNDDILY 150 (386)
T ss_dssp EHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---TC---------CSCEEEEEETHHHHHHSSCSTHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---cc---------CCeEEEEEcChhhhhccCcCHHHH
Confidence 6432111 1111111211111 11 146799999999885 34556
Q ss_pred HHHHHHHh-cCCceEEEEeecCc---cccchhhhccc--ceEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHh
Q 016800 174 ALRRTMET-YSKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEEVMSSRVLHICNEEG--LNLDAEALSTLSSI 245 (382)
Q Consensus 174 ~Ll~~le~-~~~~~~~Il~~~~~---~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~ 245 (382)
.|++.++. ....+.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++.+++...+.... ..+++++++.+++.
T Consensus 151 ~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 230 (386)
T 2qby_A 151 KLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAAL 230 (386)
T ss_dssp HHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHH
T ss_pred HHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence 66666664 34467788888866 45778899998 5899999999999999998876533 56899999999999
Q ss_pred cC---CCHHHHHHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 246 SQ---GDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 246 s~---gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
++ ||+|.++++++.++..+ ...|+.+++..+..
T Consensus 231 ~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 231 AAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 98 99999999998877654 24799999988764
No 32
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.84 E-value=1.3e-19 Score=172.06 Aligned_cols=213 Identities=17% Similarity=0.196 Sum_probs=156.9
Q ss_pred cCCC-CCCccc-C--cHHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH
Q 016800 55 YRPK-QVKDVA-H--QEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (382)
Q Consensus 55 ~~p~-~~~~~~-g--~~~~~~~l~~~l~~~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
+.|. +|++++ | +......+..+..... .++++|+||+|+||||+++++++.+.... ....++.+++.+. ...
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~~~--~~~ 174 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKF--LND 174 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHHHH--HHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHH--HHH
Confidence 4453 788888 5 4455566666666544 45599999999999999999999874321 1245566665432 111
Q ss_pred HHHHHH-----HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcC-CceEEEEeecCc-cc---
Q 016800 130 VRTKIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI-SR--- 197 (382)
Q Consensus 130 ~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~-~~~~~Il~~~~~-~~--- 197 (382)
+...+. .+... .. .+..+++|||++.+.. ..++.|+.+++... ....+|++++.+ ..
T Consensus 175 ~~~~~~~~~~~~~~~~-~~----------~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 175 LVDSMKEGKLNEFREK-YR----------KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHTTCHHHHHHH-HT----------TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHcccHHHHHHH-hc----------CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 111111 11110 00 0346999999999975 67889999988643 345677777653 33
Q ss_pred cchhhhccc---ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChh
Q 016800 198 IIEPLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSK 271 (382)
Q Consensus 198 l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~ 271 (382)
+.+.+++|+ ..+.|++|+.++...++...+...++.++++++..|+..++||+|.+.+.++.+..++ +..||.+
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~ 323 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLK 323 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 779999999 5899999999999999999999999999999999999999999999999999887665 5679999
Q ss_pred hHhhhhCCCC
Q 016800 272 DLISVSGVIP 281 (382)
Q Consensus 272 ~v~~~~~~~~ 281 (382)
++++++....
T Consensus 324 ~~~~~l~~~~ 333 (440)
T 2z4s_A 324 EAILLLKDFI 333 (440)
T ss_dssp HHHHHTSTTT
T ss_pred HHHHHHHHHh
Confidence 9999887644
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=1.5e-19 Score=164.29 Aligned_cols=204 Identities=19% Similarity=0.263 Sum_probs=145.3
Q ss_pred CcccCcHHHHHHHHHHHHc--------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 61 KDVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
++++|++.+++.+...+.. ....+++|+||||||||++|+++++.+. ..++.+++.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~------~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN------APFIKVEATKFTE 88 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT------CCEEEEEGGGGSS
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEcchhccc
Confidence 4689999999998887764 2344599999999999999999999983 3456666643211
Q ss_pred --------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHH------------HHHHHHHHHhc----
Q 016800 127 --------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA------------QNALRRTMETY---- 182 (382)
Q Consensus 127 --------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~------------~~~Ll~~le~~---- 182 (382)
...+......... .... ...+.||+|||+|.++.+. ++.|++++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 159 (310)
T 1ofh_A 89 VGYVGKEVDSIIRDLTDSAGG-AIDA--------VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST 159 (310)
T ss_dssp CCSGGGSTTHHHHHHHHTTTT-CHHH--------HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCccCccHHHHHHHHHHHhhH-HHhh--------ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEec
Confidence 1112222111000 0000 0034699999999997654 88999999963
Q ss_pred ------CCceEEEEee----cCccccchhhhcccc-eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHH
Q 016800 183 ------SKVTRFFFIC----NYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEA 238 (382)
Q Consensus 183 ------~~~~~~Il~~----~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~ 238 (382)
...+.||+++ +.+..+.+++.+|+. .+.|++|+.+++..++.. .+...+. .+++++
T Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a 239 (310)
T 1ofh_A 160 KHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDA 239 (310)
T ss_dssp TTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHH
T ss_pred ccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHH
Confidence 3456677774 456778999999997 699999999999999882 2333453 589999
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHHHHh-----c---CC--CCChhhHhhhhCC
Q 016800 239 LSTLSSIS--------QGDLRRAITYLQGAARL-----F---GS--SITSKDLISVSGV 279 (382)
Q Consensus 239 ~~~l~~~s--------~gdlr~a~~~l~~~~~~-----~---~~--~It~~~v~~~~~~ 279 (382)
++.|++.+ .||+|.+.+.++.+... . +. .||.++|..++..
T Consensus 240 ~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 240 VKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred HHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 99999988 79999999999986521 1 11 3888888887754
No 34
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.83 E-value=6.9e-20 Score=175.39 Aligned_cols=197 Identities=15% Similarity=0.200 Sum_probs=143.6
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeec
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~ 121 (382)
.-..+|.++++|..+++++|+++.+..+...+.....+|+||+||||||||++|+++++.+.+.. ..+..++.+++
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 45678999999999999999999999999999888888899999999999999999999985432 12345666665
Q ss_pred CCCcch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc-
Q 016800 122 SDDRGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS- 196 (382)
Q Consensus 122 ~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~- 196 (382)
.. ... ..++..+.... .. +..|++|| .+.++++.|+..++. ..+.+|.++|...
T Consensus 245 ~~-~~~g~~e~~~~~~~~~~~----~~----------~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~ 303 (468)
T 3pxg_A 245 GT-KYRGEFEDRLKKVMDEIR----QA----------GNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEY 303 (468)
T ss_dssp ---------CTTHHHHHHHHH----TC----------CCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTT
T ss_pred Cc-cccchHHHHHHHHHHHHH----hc----------CCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHH
Confidence 41 111 12222222221 11 45699999 556778888888874 3567888888765
Q ss_pred ----ccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHHH
Q 016800 197 ----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITYLQGAAR 262 (382)
Q Consensus 197 ----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~g------dlr~a~~~l~~~~~ 262 (382)
.+.+++.+||..+.|++|+.++...++..++.. +++.++++++..++..+.+ -++.++++++.++.
T Consensus 304 ~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 304 RKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 578999999999999999999999999987765 6788999999999987643 36689999987765
Q ss_pred h
Q 016800 263 L 263 (382)
Q Consensus 263 ~ 263 (382)
.
T Consensus 384 ~ 384 (468)
T 3pxg_A 384 K 384 (468)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.83 E-value=4.6e-19 Score=156.75 Aligned_cols=206 Identities=18% Similarity=0.153 Sum_probs=148.4
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------CC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
.|.+++.+.+|++++|++.+++.+...+.. .. ..+++|+||||||||+++++++..+. ..++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~ 74 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFF 74 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT------CCEE
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC------CCEE
Confidence 488899999999999999999877765532 12 23499999999999999999999873 3456
Q ss_pred EeecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHH
Q 016800 118 ELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRR 177 (382)
Q Consensus 118 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~ 177 (382)
.+++.+.. ....++..+... ... .+.+++|||+|.+.. ...+.++.
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~----------~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 140 (257)
T 1lv7_A 75 TISGSDFVEMFVGVGASRVRDMFEQA----KKA----------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV 140 (257)
T ss_dssp EECSCSSTTSCCCCCHHHHHHHHHHH----HTT----------CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHH
T ss_pred EEeHHHHHHHhhhhhHHHHHHHHHHH----HHc----------CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHH
Confidence 66665421 122233322221 111 456999999976632 34566777
Q ss_pred HHHhc--CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CH
Q 016800 178 TMETY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DL 250 (382)
Q Consensus 178 ~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dl 250 (382)
.++.. ...+.+|.++|.++.+.+.+.+ |+. .+.|++|+.++..+++...++... ++++ .+..++..+.| +.
T Consensus 141 ~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 141 EMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSG 218 (257)
T ss_dssp HHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCH
T ss_pred HhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCH
Confidence 77753 3456788889999999999987 765 789999999999999988776543 3333 36778888999 99
Q ss_pred HHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 251 RRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 251 r~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
|.+.+.+..++..+ ...|+.+++.+++
T Consensus 219 ~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 249 (257)
T 1lv7_A 219 ADLANLVNEAALFAARGNKRVVSMVEFEKAK 249 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 99999888877654 3568888876654
No 36
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=4.4e-19 Score=159.36 Aligned_cols=205 Identities=18% Similarity=0.185 Sum_probs=142.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
.+.+|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+ ...++.+++.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~ 85 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGS 85 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehH
Confidence 346899999999999999887743 233459999999999999999999987 3456666654
Q ss_pred CCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC-----------CHHHHHHHHHHHHh-----cCC
Q 016800 123 DDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMET-----YSK 184 (382)
Q Consensus 123 ~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l-----------~~~~~~~Ll~~le~-----~~~ 184 (382)
+... .......+.......... .+.||+|||+|.+ ....+..|..+++. ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKEK----------APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHHT----------CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHhccchHHHHHHHHHHHHHHc----------CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 3211 111122222222221111 4579999999987 44556666666653 335
Q ss_pred ceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 016800 185 VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGA 260 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~ 260 (382)
.+.+|+++|.+..+.+.+.+ |+. .+.|++|+.++..+++...+...+.. .+..+..++..+.| +.+.+..++..+
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a 234 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEA 234 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67888999999999999998 876 89999999999999999887665543 22346777887766 555655555555
Q ss_pred HHhc----CCCCChhhHhhhh
Q 016800 261 ARLF----GSSITSKDLISVS 277 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~ 277 (382)
...+ ...|+.+++.+++
T Consensus 235 ~~~a~~~~~~~I~~~d~~~al 255 (285)
T 3h4m_A 235 GMNAIRELRDYVTMDDFRKAV 255 (285)
T ss_dssp HHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHhccCcCCHHHHHHHH
Confidence 4433 3568888877665
No 37
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.82 E-value=2.1e-19 Score=164.46 Aligned_cols=187 Identities=16% Similarity=0.180 Sum_probs=138.6
Q ss_pred CCCCccc-C--cHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 58 KQVKDVA-H--QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
.+|++++ | +......+..++.... .++++|+||||+|||++++++++.+... +..++.+++.+. ...+..
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~--~~~~~~ 82 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDF--AQAMVE 82 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHH--HHHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHH--HHHHHH
Confidence 4788887 4 5566677777777653 3459999999999999999999987433 345667766432 111111
Q ss_pred HHH-----HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcC-CceEEEEeecCc-c---ccch
Q 016800 133 KIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI-S---RIIE 200 (382)
Q Consensus 133 ~l~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~-~~~~~Il~~~~~-~---~l~~ 200 (382)
.+. .+... .. +..+++|||++.++. ..++.|+.+++... ....+|++++.+ . .+.+
T Consensus 83 ~~~~~~~~~~~~~-~~-----------~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 83 HLKKGTINEFRNM-YK-----------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHTCHHHHHHH-HH-----------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHcCcHHHHHHH-hc-----------CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh
Confidence 111 11110 00 346999999999975 67888888887532 334566666543 3 5789
Q ss_pred hhhccc---ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016800 201 PLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (382)
Q Consensus 201 ~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~ 263 (382)
.+.+|+ ..+.|+| +.++...++...+...++.+++++++.|+..+ ||+|.+.+.++.+..+
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 999999 6899999 99999999999999999999999999999999 9999999999988765
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.82 E-value=2e-18 Score=153.05 Aligned_cols=205 Identities=16% Similarity=0.114 Sum_probs=134.5
Q ss_pred CCCCCcccCcHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
+.+|++++|++.+++.+.+++.. ....+++|+||||||||++|+++++.+ ...++.+++.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 35789999999999888776532 122349999999999999999999987 345666776543
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC------------HHHHH---HHHHHHHh--cCCc
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQN---ALRRTMET--YSKV 185 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~------------~~~~~---~Ll~~le~--~~~~ 185 (382)
.. .......+.......... .+.+|+|||+|.+. ...+. .|+..++. ....
T Consensus 76 ~~~~~~~~~~~~~~~~~~a~~~----------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 76 VEVIGGLGAARVRSLFKEARAR----------APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp SSSSTTHHHHHHHHHHHHHHHT----------CSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred HhhccChhHHHHHHHHHHHHhc----------CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 21 011111122222111111 45799999999983 22333 34444443 2356
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCC-HHHHHHHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGD-LRRAITYLQGA 260 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gd-lr~a~~~l~~~ 260 (382)
+.+|.++|.+..+.+++.+ |+. .+.|++|+.++..+++...+...+...+.+. ...++..+.|. .+.+.++++.+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a 225 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEA 225 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 7788889999999999998 885 8899999999999999999988887777664 57888888775 44666666665
Q ss_pred HHhc----CCCCChhhHhhhh
Q 016800 261 ARLF----GSSITSKDLISVS 277 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~ 277 (382)
+..+ ...|+.+++..++
T Consensus 226 ~~~a~~~~~~~i~~~d~~~a~ 246 (262)
T 2qz4_A 226 ALHAAREGHTSVHTLNFEYAV 246 (262)
T ss_dssp HTC--------CCBCCHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHH
Confidence 5443 2456666665544
No 39
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.8e-18 Score=159.03 Aligned_cols=203 Identities=20% Similarity=0.246 Sum_probs=139.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.|...+.- | ..| .+|||||||||||.+|+++|.++ +.+++.+++++.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l 218 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAEL 218 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHh
Confidence 5899999999999998876632 2 223 39999999999999999999998 466777777643
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHh--cCCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMET--YSKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~--~~~~~ 186 (382)
.. ...-...+...+..+... .+.||+|||+|.+.. ...+.|+..|+. ....+
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~----------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREH----------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHT----------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred hccccchHHHHHHHHHHHHHHh----------CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 21 111122233333222221 457999999998832 134567777774 34567
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAAR 262 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~ 262 (382)
.+|.+||.++.+++++++ |+. .+.|+.|+.++..++++..+++.... ++-.++.|++.+.| +-..+.+++..++.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~ 367 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGM 367 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 788999999999999997 777 89999999999999998877654432 12237788888765 33344444444444
Q ss_pred hc----CCCCChhhHhhhh
Q 016800 263 LF----GSSITSKDLISVS 277 (382)
Q Consensus 263 ~~----~~~It~~~v~~~~ 277 (382)
.+ ...|+.+++..++
T Consensus 368 ~Air~~~~~vt~~Df~~Al 386 (405)
T 4b4t_J 368 YALRERRIHVTQEDFELAV 386 (405)
T ss_dssp HHHHTTCSBCCHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHH
Confidence 33 3457777665544
No 40
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=9.8e-19 Score=157.15 Aligned_cols=200 Identities=7% Similarity=0.064 Sum_probs=136.8
Q ss_pred ccCcHHHHHHHH----HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCCCcchHHHH-HH
Q 016800 63 VAHQEEVVRVLT----NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDDRGINVVR-TK 133 (382)
Q Consensus 63 ~~g~~~~~~~l~----~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~~~~~~~~~-~~ 133 (382)
+.|+++....+. ..+..+..++++|+||||||||++++.+++.+.... .....++++|+........+. ..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 667777776655 445567777799999999999999999999984221 113567889986543322221 11
Q ss_pred HHHHHHhhhcCCCC-------CCC--CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc---CCceEEEEeecCccc----
Q 016800 134 IKTFAAVAVGSGQR-------RGG--YPCPPYKIIILDEADSMTEDAQNALRRTMETY---SKVTRFFFICNYISR---- 197 (382)
Q Consensus 134 l~~~~~~~~~~~~~-------~~~--~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~---- 197 (382)
...+.......... +.. ...+...||++||+|.+. .++.|+.+++.+ .....+|+++|..+.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 11111000000000 000 001256799999999998 677888887643 335667888877542
Q ss_pred cchhhhcccc--eEEecCCCHHHHHHHHHHHHHHhCC-----------------------------------CCCHHHHH
Q 016800 198 IIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGL-----------------------------------NLDAEALS 240 (382)
Q Consensus 198 l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~~~~~~~~ 240 (382)
+.+.++||+. .+.|+|++.+|+.+++.+++..... .+++++++
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~ 259 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQ 259 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHH
Confidence 5567889984 7999999999999999999876421 36899999
Q ss_pred HHHH---hcCCCHHHHHHHHHHHHHhc
Q 016800 241 TLSS---ISQGDLRRAITYLQGAARLF 264 (382)
Q Consensus 241 ~l~~---~s~gdlr~a~~~l~~~~~~~ 264 (382)
.+++ .+.||+|+|++.|..+...+
T Consensus 260 ~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 260 LIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 9998 56899999999999887654
No 41
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.9e-18 Score=157.56 Aligned_cols=188 Identities=18% Similarity=0.157 Sum_probs=139.6
Q ss_pred cCCCCCCcccCcHHHHHHHHHHHHc-----------CCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 55 YRPKQVKDVAHQEEVVRVLTNTLET-----------ANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+.+.+|+++.|++.+++.+...+.. ... .++||+||||||||++|+++++.+. ...++.++++
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~~i~~~ 80 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSS 80 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-----SCEEEEEECC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-----CCcEEEEEhH
Confidence 3456899999999999999887731 122 2399999999999999999999872 2355666665
Q ss_pred CCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc---
Q 016800 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY--- 182 (382)
Q Consensus 123 ~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~--- 182 (382)
+.. ....++..+.... .. .+.||+|||+|.+. ....+.|+..++..
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~----~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLAR----EN----------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHH----HT----------SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred HHHhhhhhHHHHHHHHHHHHHH----hc----------CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 421 1222333322211 11 55799999999882 23467788888753
Q ss_pred CCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQGA 260 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gd-lr~a~~~l~~~ 260 (382)
...+.+|.+||.+..+.+++++|+. .+.+++|+.++...++...+...+..+++..+..|++.+.|. .+.+..+++.+
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4567788899999999999999996 899999999999999999888777778999999999999875 44444555544
Q ss_pred H
Q 016800 261 A 261 (382)
Q Consensus 261 ~ 261 (382)
+
T Consensus 227 ~ 227 (322)
T 1xwi_A 227 L 227 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.81 E-value=1.9e-19 Score=165.30 Aligned_cols=214 Identities=18% Similarity=0.174 Sum_probs=151.9
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
.+|.++++|..+++++|+++++..+...+..+. +++|+||||||||++|+++++.+. ..+..+++.......
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~------~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMD------LDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTT------CCEEEEECCTTCCHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhC------CCeEEEecCCCCChh
Confidence 479999999999999999999999988887754 799999999999999999999873 334555543221111
Q ss_pred HHHHHHHHHHHhhhcCCC---CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecC
Q 016800 129 VVRTKIKTFAAVAVGSGQ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNY 194 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~ 194 (382)
.+ +.... .....+. ..+.. ...+++|||++.++.+.++.|+..+++. +..+.+|.++|+
T Consensus 87 ~l---~g~~~-~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 87 DL---IGTMI-YNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp HH---HEEEE-EETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred hc---CCcee-ecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 11 00000 0000000 00000 1259999999999999999999999974 344556656664
Q ss_pred cc-----ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHH----------------------hCCCCCHHHHHHHHHhc
Q 016800 195 IS-----RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE----------------------EGLNLDAEALSTLSSIS 246 (382)
Q Consensus 195 ~~-----~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~l~~~s 246 (382)
.. .+.+++.+||. .+.+++|+.++..+++...+.. .++.+++++++.+++.+
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~ 239 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELV 239 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 32 37899999998 5999999999999999887654 26778999998887654
Q ss_pred --------------------CCCHHHHHHHHHHHHHhc---C-CCCChhhHhhhh
Q 016800 247 --------------------QGDLRRAITYLQGAARLF---G-SSITSKDLISVS 277 (382)
Q Consensus 247 --------------------~gdlr~a~~~l~~~~~~~---~-~~It~~~v~~~~ 277 (382)
+.++|.+++++..+...+ + ..|+.++|.+++
T Consensus 240 ~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~ 294 (331)
T 2r44_A 240 FATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVA 294 (331)
T ss_dssp HHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred HHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 226999988887665443 2 347777765544
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=1.1e-18 Score=165.94 Aligned_cols=194 Identities=18% Similarity=0.155 Sum_probs=142.2
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------CCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------ANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
.+..++.+.+|++++|++.+++.|...+.. ... .++||+||||||||++|+++++.+. ...++
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~ 197 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFF 197 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SSEEE
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CCCEE
Confidence 345567788999999999999999887731 122 3499999999999999999999872 23566
Q ss_pred EeecCCCcch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH
Q 016800 118 ELNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME 180 (382)
Q Consensus 118 ~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le 180 (382)
.+++++.... ..++..+.... .. .+.||+|||+|.+. ....+.|+..++
T Consensus 198 ~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 263 (444)
T 2zan_A 198 SISSSDLVSKWLGESEKLVKNLFQLAR----EN----------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ 263 (444)
T ss_dssp EECCC---------CCCTHHHHHHHHH----HS----------CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTT
T ss_pred EEeHHHHHhhhcchHHHHHHHHHHHHH----Hc----------CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHh
Confidence 6666543211 11222222111 11 55799999999983 345677777777
Q ss_pred h---cCCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHH
Q 016800 181 T---YSKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAIT 255 (382)
Q Consensus 181 ~---~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~ 255 (382)
. .+..+.||.+||.+..+.+++++||. .+.+++|+.++...++...+...+..+++..+..|+..+.| +.+.+.+
T Consensus 264 ~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 264 GVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp CSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 5 35678889999999999999999996 88999999999999999988777766789999999999988 5555555
Q ss_pred HHHHHHH
Q 016800 256 YLQGAAR 262 (382)
Q Consensus 256 ~l~~~~~ 262 (382)
++..++.
T Consensus 344 l~~~a~~ 350 (444)
T 2zan_A 344 IVRDALM 350 (444)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5555543
No 44
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.4e-17 Score=155.64 Aligned_cols=203 Identities=21% Similarity=0.203 Sum_probs=137.5
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.+...+.. | ..|. +|||||||||||++|+++|.++ +.+++.+++++.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~l 251 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASGI 251 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGT
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhhh
Confidence 4899999999999988877632 2 2333 9999999999999999999998 456777777643
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhcC--Cce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS--KVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~--~~~ 186 (382)
.+ ...-...+...+...... .+.||+|||+|.+.. ...+.|+..|+... ..+
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~----------~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v 321 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEH----------EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHS----------CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS
T ss_pred ccccchHHHHHHHHHHHHHHhc----------CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe
Confidence 21 111122233322222221 557999999998731 23456777777543 457
Q ss_pred EEEEeecCccccchhhhcc--cc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLASR--CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAAR 262 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~sr--~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~ 262 (382)
.+|++||.++.++++++++ +. .|+|+.|+.++...+++..+.+.... ++-.+..+++.+.| +-..+.+++..++.
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~ 400 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGF 400 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 8899999999999999876 54 79999999999999998877654432 22237788888765 33344444444443
Q ss_pred hc----CCCCChhhHhhhh
Q 016800 263 LF----GSSITSKDLISVS 277 (382)
Q Consensus 263 ~~----~~~It~~~v~~~~ 277 (382)
.+ ...|+.+++..++
T Consensus 401 ~air~~~~~i~~~d~~~Al 419 (437)
T 4b4t_L 401 FAIRDDRDHINPDDLMKAV 419 (437)
T ss_dssp HHHHTTCSSBCHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHH
Confidence 33 3457766655443
No 45
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.5e-18 Score=158.79 Aligned_cols=203 Identities=22% Similarity=0.261 Sum_probs=136.7
Q ss_pred CCCCcccCcHHHHHHHHHHHH-----------cC-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE-----------TA-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.|...+. .| +.|. +|||||||||||++|+++|.++ +..++.+++++.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l 251 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQL 251 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhh
Confidence 589999999999998877642 12 2233 9999999999999999999998 456777777543
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HH---HHHHHHHHHHhcC--Cce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------ED---AQNALRRTMETYS--KVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~---~~~~Ll~~le~~~--~~~ 186 (382)
.. ...-...+..++...... .+.||+|||+|.+. .. ..+.|+..|+... ..+
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~----------aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~V 321 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEK----------APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHH----------CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSS
T ss_pred hhcccchHHHHHHHHHHHHHhc----------CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCE
Confidence 21 111112222222221111 45799999999761 11 2345666676543 456
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQGAA 261 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~~~~ 261 (382)
.+|.+||.++.+++++.+ |+. .+.|+.|+.++..++++..+++... +++ .++.|++.+.| +...+.+++..++
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 788899999999999987 776 8999999999999999888776543 222 36778887765 3344444444444
Q ss_pred Hhc----CCCCChhhHhhhhC
Q 016800 262 RLF----GSSITSKDLISVSG 278 (382)
Q Consensus 262 ~~~----~~~It~~~v~~~~~ 278 (382)
..+ ...|+.+++..++.
T Consensus 400 ~~a~r~~~~~i~~~Df~~Al~ 420 (434)
T 4b4t_M 400 MIALRNGQSSVKHEDFVEGIS 420 (434)
T ss_dssp HHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHH
Confidence 333 35677777666553
No 46
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.79 E-value=1.5e-18 Score=157.83 Aligned_cols=189 Identities=23% Similarity=0.309 Sum_probs=139.2
Q ss_pred CcccCcHHHHHHHHHHHHcCC--------CC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETAN--------CP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--------~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
++++|++.+++.+...+..+. .. +++|+||||||||++|+++++.+.+.. ..++.+++..........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeecccccccccHH
Confidence 468899999998888886642 22 499999999999999999999985432 345666665432211111
Q ss_pred HHHH------------HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEE
Q 016800 132 TKIK------------TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRF 188 (382)
Q Consensus 132 ~~l~------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~ 188 (382)
..+. .+... .. ...+.+++|||++.++++.++.|++.+++.. .++.|
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~-~~---------~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEA-VR---------RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHH-HH---------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred HhcCCCCccccccccchHHHH-HH---------hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 1110 00000 00 0145799999999999999999999999864 35668
Q ss_pred EEeecC--------------------------ccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHh---------CC
Q 016800 189 FFICNY--------------------------ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE---------GL 232 (382)
Q Consensus 189 Il~~~~--------------------------~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~---------~~ 232 (382)
|+++|. ...+.+.+.+|+. .+.|.|++.+++..++...+.+. .+
T Consensus 164 I~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 243 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISL 243 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEE
T ss_pred EEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 999987 4467889999995 89999999999999988866542 34
Q ss_pred CCCHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Q 016800 233 NLDAEALSTLSSIS---QGDLRRAITYLQGAAR 262 (382)
Q Consensus 233 ~~~~~~~~~l~~~s---~gdlr~a~~~l~~~~~ 262 (382)
.+++++++.+++.+ .||.|.+.+.++.+..
T Consensus 244 ~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 244 ELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp EECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred EeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 58999999999976 4999999988887654
No 47
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.79 E-value=4.6e-18 Score=157.23 Aligned_cols=221 Identities=17% Similarity=0.112 Sum_probs=141.9
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC-----CCCC--------------
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-----ELYK-------------- 113 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~-----~~~~-------------- 113 (382)
..-+|.+|++++|++.++..+..........++||+||||||||++|+++++.+... ...+
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL 95 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCS
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhh
Confidence 344678999999999988776655554445579999999999999999999987420 0000
Q ss_pred --------CceEEeecCCCcchHHHHHH--HH-HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 114 --------SRVLELNASDDRGINVVRTK--IK-TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 114 --------~~~~~~~~~~~~~~~~~~~~--l~-~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
..++...... ....+... +. .+....... ..+....+...+++|||++.++.+.++.|+..+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~--~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~ 171 (350)
T 1g8p_A 96 STNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAF--EPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSG 171 (350)
T ss_dssp CCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGE--ECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred ccccccCCCcccccCCCc--chhhheeechhhhhhcCCceee--cCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 0111111110 01111000 00 000000000 000000013579999999999999999999999974
Q ss_pred -------------CCceEEEEeecCcc-ccchhhhcccce-EEecCCC-HHHHHHHHHHH--------------------
Q 016800 183 -------------SKVTRFFFICNYIS-RIIEPLASRCAK-FRFKPLS-EEVMSSRVLHI-------------------- 226 (382)
Q Consensus 183 -------------~~~~~~Il~~~~~~-~l~~~l~sr~~~-i~~~~~~-~~~~~~~l~~~-------------------- 226 (382)
+..+.+|.++|... .+.+++.+||.. +.+++|+ .++...++..+
T Consensus 172 ~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T 1g8p_A 172 ENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMD 251 (350)
T ss_dssp EEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHH
Confidence 23566777788644 789999999985 9999995 44444555441
Q ss_pred ---------HHHhCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHhc---C-CCCChhhHhhhh
Q 016800 227 ---------CNEEGLNLDAEALSTLSSISQG----DLRRAITYLQGAARLF---G-SSITSKDLISVS 277 (382)
Q Consensus 227 ---------~~~~~~~~~~~~~~~l~~~s~g----dlr~a~~~l~~~~~~~---~-~~It~~~v~~~~ 277 (382)
....++.+++++++.|++.+.+ ++|.++++++.+...+ + ..|+.+++.+++
T Consensus 252 ~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~ 319 (350)
T 1g8p_A 252 IRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVA 319 (350)
T ss_dssp HHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 2223567999999999988865 8999999998766544 3 458888876654
No 48
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.6e-17 Score=154.70 Aligned_cols=204 Identities=19% Similarity=0.243 Sum_probs=136.2
Q ss_pred CC-CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 56 RP-KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 56 ~p-~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
+| .+|+|+.|.+++++.|...+.. | +.|. +|||||||||||++|+++|.++ +..++.+++
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~ 276 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIG 276 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEG
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEh
Confidence 34 4899999999999998876521 2 3333 9999999999999999999998 456777776
Q ss_pred CCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc--C
Q 016800 122 SDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY--S 183 (382)
Q Consensus 122 ~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~--~ 183 (382)
++... ...-...+...+...... .+.||+|||+|.+.. ...+.|+..|+.. .
T Consensus 277 s~L~sk~vGesek~ir~lF~~Ar~~----------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 277 SELVQKYVGEGARMVRELFEMARTK----------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp GGGCCCSSSHHHHHHHHHHHHHHHT----------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred HHhhcccCCHHHHHHHHHHHHHHhc----------CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 54321 111112222222222211 457999999998731 1234556666643 3
Q ss_pred CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHH
Q 016800 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQ 258 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~ 258 (382)
..+.+|++||.++.+++++++ |+. .++|+.|+.++..++++..++... ++.+ .++.|++.+.| +-..+.+++.
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--VERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC--BCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 467788899999999999987 887 899999999999999988776543 3322 36778887765 3333334444
Q ss_pred HHHHhc----CCCCChhhHhhhh
Q 016800 259 GAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 259 ~~~~~~----~~~It~~~v~~~~ 277 (382)
.++..+ ...|+.+++..++
T Consensus 425 eAa~~Air~~~~~it~~Df~~Al 447 (467)
T 4b4t_H 425 EAGMFAIRARRKVATEKDFLKAV 447 (467)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHH
T ss_pred HHHHHHHHcCCCccCHHHHHHHH
Confidence 444332 3456766655443
No 49
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.7e-17 Score=150.74 Aligned_cols=202 Identities=19% Similarity=0.238 Sum_probs=136.8
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.|...+.. | ..|. +|||||||||||++|+++|.++ +..++.+++++.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~s~l 252 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT------SATFLRIVGSEL 252 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEESGGG
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh------CCCEEEEEHHHh
Confidence 5899999999999988776632 2 2233 9999999999999999999998 456777776543
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc--CCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY--SKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~--~~~~ 186 (382)
.. ...-...+...+...... .+.||+|||+|.+.. ...+.|+..++.. ...+
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~----------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~V 322 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGEN----------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHT----------CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSE
T ss_pred hhccCchHHHHHHHHHHHHHhc----------CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCE
Confidence 21 111122222222222211 457999999998731 2345566666643 3567
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQGAA 261 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~~~~ 261 (382)
.+|++||.++.+++++++ |+. .|.|+.|+.++..++++..+++.. ++++ .++.|++.+.| +-.++.+++..++
T Consensus 323 iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMCTEAG 400 (437)
T ss_dssp EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 889999999999999998 776 799999999999999988776544 3332 37788887755 3333344444444
Q ss_pred Hhc----CCCCChhhHhhhh
Q 016800 262 RLF----GSSITSKDLISVS 277 (382)
Q Consensus 262 ~~~----~~~It~~~v~~~~ 277 (382)
..+ ...|+.+++..++
T Consensus 401 ~~Air~~~~~It~eDf~~Al 420 (437)
T 4b4t_I 401 LLALRERRMQVTAEDFKQAK 420 (437)
T ss_dssp HHHHHTTCSCBCHHHHHHHH
T ss_pred HHHHHcCCCccCHHHHHHHH
Confidence 333 3457777765544
No 50
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.8e-17 Score=153.35 Aligned_cols=202 Identities=22% Similarity=0.241 Sum_probs=135.8
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.+...+.. | ..|. +|||||||||||++|+++|+++ +..++.+++++.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l 242 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEF 242 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGT
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchh
Confidence 4899999999999988776632 2 2233 9999999999999999999998 466777777643
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------------HHHHHHHHHHHHhc--CCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETY--SKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------------~~~~~~Ll~~le~~--~~~~ 186 (382)
.+ ...-...+...+...... .+.|++|||+|.+. ....+.|+..|+.. ..++
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~----------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v 312 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLAREN----------APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNV 312 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHT----------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSE
T ss_pred hccccchhHHHHHHHHHHHHHc----------CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCE
Confidence 21 111122223222222211 45799999998651 12356777778754 4567
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEec-CCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFK-PLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQGA 260 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~~~ 260 (382)
.+|++||.++.+++++++ |+. .|.|+ +|+.++...+++..+++.. ++++ .++.++..+.| +...+.+++..+
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~~t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLIIRNDSLSGAVIAAIMQEA 390 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 788999999999999997 676 78996 6888898899888776544 3332 37788887755 333444444444
Q ss_pred HHhc----CCCCChhhHhhhh
Q 016800 261 ARLF----GSSITSKDLISVS 277 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~ 277 (382)
+..+ ...|+.+++.+++
T Consensus 391 ~~~a~r~~~~~i~~~d~~~A~ 411 (428)
T 4b4t_K 391 GLRAVRKNRYVILQSDLEEAY 411 (428)
T ss_dssp HHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHH
Confidence 4333 3457766665543
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=2.9e-18 Score=144.37 Aligned_cols=165 Identities=18% Similarity=0.181 Sum_probs=119.0
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeecCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASD 123 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~~ 123 (382)
..+|.++++|..|++++|+++.++.+..++..+...+++|+||+|+|||++++.+++.+.+... ....++.+++..
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 4689999999999999999999999999998877777999999999999999999998754211 123445554322
Q ss_pred C----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------HHHHHHHHHHhcCCceEEEEe
Q 016800 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------AQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 124 ~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------~~~~Ll~~le~~~~~~~~Il~ 191 (382)
. .........+..+....... ++..+|+|||+|.+... .++.|..+++. ..+.+|++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~ 157 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLAKQ---------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGA 157 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHHHS---------TTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEE
T ss_pred HhccCCccccHHHHHHHHHHHHhhc---------CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEe
Confidence 1 11222222333332211111 15679999999999632 36677777765 34567888
Q ss_pred ecCcc-----ccchhhhcccceEEecCCCHHHHHHHH
Q 016800 192 CNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 192 ~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
++... .+.+++.+|+..+.|++|+.++..+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 87665 678999999999999999999987764
No 52
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.76 E-value=4e-17 Score=154.89 Aligned_cols=200 Identities=24% Similarity=0.254 Sum_probs=143.3
Q ss_pred CCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
+.+|++++|++++++.+...+.. .+.| +++|+||||||||+++++++... +..++.+++++.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~~~ 85 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGSDF 85 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHHHH
Confidence 45899999999999888776542 1233 39999999999999999999987 345666766542
Q ss_pred c------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc--
Q 016800 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY-- 182 (382)
Q Consensus 125 ~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~-- 182 (382)
. +...++..+.... .. .+.||+|||+|.+.. ..++.|+..++..
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~----~~----------~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAK----AH----------APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHH----HT----------CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred HHHHhcccHHHHHHHHHHHH----hc----------CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 1 1122333222211 11 457999999998743 2457777777743
Q ss_pred CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCCCH-HHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQGDL-RRAITYL 257 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~gdl-r~a~~~l 257 (382)
...+.+|.+||.++.+.+.+.+ |+. .+.+++|+.++..++++..++... +.++ .+..++..+.|+. +.+.+++
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~lv 229 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLV 229 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHHHH
Confidence 3467788889999889888876 776 889999999999999887776543 3333 3777899998877 6777777
Q ss_pred HHHHHhc----CCCCChhhHhhhhC
Q 016800 258 QGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 258 ~~~~~~~----~~~It~~~v~~~~~ 278 (382)
..++..+ ...|+.+++..++.
T Consensus 230 ~~Aal~A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 230 NEAALLAAREGRDKITMKDFEEAID 254 (476)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHH
Confidence 7766554 35789888877663
No 53
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.76 E-value=2.1e-17 Score=146.82 Aligned_cols=213 Identities=18% Similarity=0.166 Sum_probs=138.6
Q ss_pred CCCcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
+|++++|+...+..+.+.+.. ....+++|+||+|||||++|+++++..... ...++.+++.... .+.+...+-.
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~---~~~~~~v~~~~~~-~~~~~~~l~g 79 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAALN-ENLLDSELFG 79 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT---TSCEEEEEGGGSC-HHHHHHHHHC
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc---CCCeEEEecCCCC-hhHHHHHhcC
Confidence 688999998888777666543 223459999999999999999999876322 2467788877542 2222221100
Q ss_pred HHHhhhcCCC--CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecCc-------c
Q 016800 137 FAAVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI-------S 196 (382)
Q Consensus 137 ~~~~~~~~~~--~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~-------~ 196 (382)
.......+.. ..+.+......+|+|||++.++.+.++.|+..+++. +..+++|+++|.. .
T Consensus 80 ~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~ 159 (265)
T 2bjv_A 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEG 159 (265)
T ss_dssp CC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHT
T ss_pred CcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcC
Confidence 0000000000 000000113469999999999999999999999974 3457889998874 1
Q ss_pred ccchhhhcccc--eEEecCCCH--HHHHHHHH----HHHHHhCC----CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 016800 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVL----HICNEEGL----NLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (382)
Q Consensus 197 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~----~~~~~~~~----~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~ 263 (382)
.+.+.+.+|+. .+.++++.. +++..++. ..+...+. .+++++++.+.... .||+|.+.+.++.+...
T Consensus 160 ~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 160 TFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp SSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 35688999985 577888775 56665544 44444554 68999999998775 89999999999988765
Q ss_pred c-CCCCChhhHhh
Q 016800 264 F-GSSITSKDLIS 275 (382)
Q Consensus 264 ~-~~~It~~~v~~ 275 (382)
+ +..|+.+++..
T Consensus 240 ~~~~~i~~~~l~~ 252 (265)
T 2bjv_A 240 HGTSDYPLDDIII 252 (265)
T ss_dssp HCCSSSCBCCCCS
T ss_pred CCCCcCcHHHcch
Confidence 5 55788777643
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.76 E-value=7.8e-18 Score=172.74 Aligned_cols=206 Identities=17% Similarity=0.190 Sum_probs=144.2
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD 123 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~ 123 (382)
..+|.++++|..|++++|+++.+..+...+..+..++++|+||||||||++++.+++.+.+.. ..+..++.+++..
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 357999999999999999999999999999888877899999999999999999999874321 1244566666644
Q ss_pred Ccc----hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHHHhcCCceEEEEe
Q 016800 124 DRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 124 ~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------~~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
... .......+.......... ++..|++|||+|.+. .+..+.|...++.. ...+|.+
T Consensus 237 l~~g~~~~g~~~~~l~~~~~~~~~~---------~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~a 305 (854)
T 1qvr_A 237 LLAGAKYRGEFEERLKAVIQEVVQS---------QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGA 305 (854)
T ss_dssp ---------CHHHHHHHHHHHHHTT---------CSSEEEEECCC-------------------HHHHHTT--CCCEEEE
T ss_pred hhccCccchHHHHHHHHHHHHHHhc---------CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEe
Confidence 311 112222233322222111 145799999999996 45567788888753 4557777
Q ss_pred ecCcc----ccchhhhcccceEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcCC------CHHHHHHHH
Q 016800 192 CNYIS----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAITYL 257 (382)
Q Consensus 192 ~~~~~----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~s~g------dlr~a~~~l 257 (382)
++... .+.+++.+||+.+.|++|+.++...+++.++. ..++.++++++..+++.+.| -+..++.++
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ll 385 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLI 385 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHH
Confidence 77553 36899999999999999999999999987665 34788999999999987733 388899988
Q ss_pred HHHHHhc
Q 016800 258 QGAARLF 264 (382)
Q Consensus 258 ~~~~~~~ 264 (382)
+.++...
T Consensus 386 dea~a~~ 392 (854)
T 1qvr_A 386 DEAAARL 392 (854)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777543
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=5.5e-17 Score=164.66 Aligned_cols=198 Identities=16% Similarity=0.195 Sum_probs=142.8
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeec
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~ 121 (382)
.-..+|.++++|..+++++|+++.++.+...+.....+|+||+||||||||++|+++++.+.+.+ ..+..++.++.
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 34568999999999999999999999999999988888899999999999999999999985422 12334454444
Q ss_pred CCC-c--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc--
Q 016800 122 SDD-R--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-- 196 (382)
Q Consensus 122 ~~~-~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~-- 196 (382)
... . ....++..+..... . ++.|++|| .+.+.++.|+..++. ..+.+|.+||...
T Consensus 245 g~~~~G~~e~~l~~~~~~~~~----~----------~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~ 304 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKVMDEIRQ----A----------GNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYR 304 (758)
T ss_dssp --------CTTHHHHHHHHHT----C----------CCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTH
T ss_pred cccccchHHHHHHHHHHHHHh----c----------CCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHH
Confidence 110 0 01122333322221 1 45699999 455678888888874 4567888888766
Q ss_pred ---ccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcC------CCHHHHHHHHHHHHHh
Q 016800 197 ---RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQ------GDLRRAITYLQGAARL 263 (382)
Q Consensus 197 ---~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~------gdlr~a~~~l~~~~~~ 263 (382)
.+.+++++||..+.|++|+.++...++..++.. .++.++++++..++..+. ..++.++.+++.++..
T Consensus 305 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~ 384 (758)
T 3pxi_A 305 KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (758)
T ss_dssp HHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHH
Confidence 588999999999999999999999999877655 677899999999988763 3467888888877653
No 56
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.74 E-value=8.7e-17 Score=145.31 Aligned_cols=187 Identities=20% Similarity=0.208 Sum_probs=128.6
Q ss_pred cCCCCCCcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 55 YRPKQVKDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
..+.+|++++|++.+++.+..++.. + ..+ +++|+||||||||++|+++++.+ ...++.+++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~ 82 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKG 82 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEh
Confidence 3456899999999999999887753 1 223 39999999999999999999987 345666665
Q ss_pred CCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHh
Q 016800 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMET 181 (382)
Q Consensus 122 ~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~ 181 (382)
.+.. ....++..+... ... .+.+++|||+|.+... .++.|+..++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a----~~~----------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKA----RQA----------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHH----HHT----------CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred HHHHhhhcCchHHHHHHHHHHH----Hhc----------CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 4311 011122222211 111 4579999999987543 36788888884
Q ss_pred c--CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHH
Q 016800 182 Y--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAIT 255 (382)
Q Consensus 182 ~--~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~ 255 (382)
. ..++.+|.+||.++.+.+++.+ |+. .+.|++|+.++..++++..++..+.. .+..++.++..+.| ..+.+.+
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHH
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHH
Confidence 3 4567888999999999999988 886 89999999999999998888765542 12224556666644 2334444
Q ss_pred HHHHHHH
Q 016800 256 YLQGAAR 262 (382)
Q Consensus 256 ~l~~~~~ 262 (382)
+++.++.
T Consensus 228 l~~~a~~ 234 (301)
T 3cf0_A 228 ICQRACK 234 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 57
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.74 E-value=4.9e-18 Score=165.21 Aligned_cols=213 Identities=21% Similarity=0.250 Sum_probs=136.9
Q ss_pred CcccCcHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
++++|++++.+.+...+.. .+.++++|+||||||||+++++++..+ ...+..+++.............
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l------~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL------GRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH------TCEEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEecccchhhhhhhHH
Confidence 4588999998877655431 234469999999999999999999988 2345555554322111111000
Q ss_pred HHHHHhhhcCCC-CCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHHHhcC---------------CceEEEEeecC
Q 016800 135 KTFAAVAVGSGQ-RRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETYS---------------KVTRFFFICNY 194 (382)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~~~~~~~vliiDe~d~l~~~----~~~~Ll~~le~~~---------------~~~~~Il~~~~ 194 (382)
..+......... ..... .....+++|||++.++.+ .++.|++.|+... .++.||+++|.
T Consensus 155 ~~~ig~~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~ 233 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN 233 (543)
T ss_dssp ---------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS
T ss_pred HHHhccCchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc
Confidence 000000000000 00000 013349999999999877 4588888887432 45688999999
Q ss_pred ccccchhhhcccceEEecCCCHHHHHHHHHHHHH-----Hh-----CCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 016800 195 ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN-----EE-----GLNLDAEALSTLSSIS--QGDLRRAITYLQGAAR 262 (382)
Q Consensus 195 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~~~~l~~~s--~gdlr~a~~~l~~~~~ 262 (382)
...+.+++++|+.++.|++|+.++...++...+. .. ++.++++++..++... .|++|.+.+.++.++.
T Consensus 234 ~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 234 LATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICR 313 (543)
T ss_dssp TTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHH
T ss_pred cccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHH
Confidence 9999999999999999999999999998887552 22 3457899999988744 3788888877776554
Q ss_pred hc----------CCCCChhhHhhhhCCC
Q 016800 263 LF----------GSSITSKDLISVSGVI 280 (382)
Q Consensus 263 ~~----------~~~It~~~v~~~~~~~ 280 (382)
.+ ...|+.+++..+++..
T Consensus 314 ~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 314 KAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred HHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 32 1247888888877544
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.74 E-value=3.9e-17 Score=165.99 Aligned_cols=220 Identities=16% Similarity=0.155 Sum_probs=156.5
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeec
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~ 121 (382)
.-..+|.++++|..|++++|++..++.+.+.+......+++|+||||||||++++.+++.+.+... ....++.++.
T Consensus 171 ~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp SSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred HHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 456789999999999999999999999999998887778999999999999999999998854321 1223444433
Q ss_pred CCC----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhcCCceEE
Q 016800 122 SDD----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRF 188 (382)
Q Consensus 122 ~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~~~~~Ll~~le~~~~~~~~ 188 (382)
... .........+.......... +..+++|||++.+ ..+..+.|..+++. ....+
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~----------~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~ 318 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQD----------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRV 318 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSS----------SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEE
T ss_pred HHHhccccccchHHHHHHHHHHHHHhc----------CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEE
Confidence 221 11112222233322221111 4579999999998 23445556566554 35567
Q ss_pred EEeecCc-----cccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHH
Q 016800 189 FFICNYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRA 253 (382)
Q Consensus 189 Il~~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~g------dlr~a 253 (382)
|.+++.. ..+.+++.+|+..+.|++|+.++...++..++.. .++.++++++..++..+.| .+..+
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 7777653 2456889999999999999999999999887765 6788999999999887643 45678
Q ss_pred HHHHHHHHHhc--------CCCCChhhHhhhh
Q 016800 254 ITYLQGAARLF--------GSSITSKDLISVS 277 (382)
Q Consensus 254 ~~~l~~~~~~~--------~~~It~~~v~~~~ 277 (382)
+.+++.++... ...++.+++.+++
T Consensus 399 i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCccCHHHHHHHH
Confidence 88887665432 2457877777665
No 59
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.73 E-value=6.9e-17 Score=145.87 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=142.5
Q ss_pred CcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (382)
++++|+...++.+...+.. ....+++|+||||||||++|+++++..... ...++.+++.... ...+...+ .
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~---~~~~v~v~~~~~~-~~l~~~~l---f 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS---DRPLVTLNCAALN-ESLLESEL---F 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS---SSCCCEEECSSCC-HHHHHHHH---T
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc---CCCeEEEeCCCCC-hHHHHHHh---c
Confidence 3688988888777776654 233359999999999999999999975322 3467778887642 22221111 1
Q ss_pred Hhhhc--CCC---CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------
Q 016800 139 AVAVG--SGQ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------- 195 (382)
Q Consensus 139 ~~~~~--~~~---~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~------- 195 (382)
....+ .+. ..+.+......+++|||++.++.+.+..|+..+++.. ..+++|++||..
T Consensus 75 g~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~ 154 (304)
T 1ojl_A 75 GHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSA 154 (304)
T ss_dssp CCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHH
T ss_pred CccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHh
Confidence 00000 000 0000001134599999999999999999999999753 457889988864
Q ss_pred cccchhhhcccc--eEEecCCC--HHHHHHHHHHHH----HHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 016800 196 SRIIEPLASRCA--KFRFKPLS--EEVMSSRVLHIC----NEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (382)
Q Consensus 196 ~~l~~~l~sr~~--~i~~~~~~--~~~~~~~l~~~~----~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~ 263 (382)
..+.+.+.+|+. .+.++|+. .+++..++...+ ...+ ..+++++++.+...+ .||+|.+.+.++.++..
T Consensus 155 g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 155 GRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp TSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 134567888875 46787777 466666555443 3333 468999999999988 99999999999998876
Q ss_pred c-CCCCChhhHhhhh
Q 016800 264 F-GSSITSKDLISVS 277 (382)
Q Consensus 264 ~-~~~It~~~v~~~~ 277 (382)
+ +..|+.+++...+
T Consensus 235 ~~~~~i~~~~l~~~~ 249 (304)
T 1ojl_A 235 LTGEYISERELPLAI 249 (304)
T ss_dssp CCSSSBCGGGSCGGG
T ss_pred CCCCcccHHhhhhhh
Confidence 6 4678888775443
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.73 E-value=1.1e-17 Score=140.14 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=112.5
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeec
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~ 121 (382)
.-..+|.++|+|..|++++|++..++.+..++..+...+++|+||+|+|||++++.+++.+.+... ....++.+++
T Consensus 7 ~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 7 KYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred HHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 345689999999999999999999999999998877777999999999999999999998744211 1234444443
Q ss_pred CCC----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCceEE
Q 016800 122 SDD----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRF 188 (382)
Q Consensus 122 ~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~~ 188 (382)
... .........+..+....... ++..+++|||++.+. .+..+.|...++. ..+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~i 155 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDA---------EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRC 155 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHT---------TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhc---------CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeE
Confidence 221 01122222222222111111 145799999999986 4556777777765 45668
Q ss_pred EEeecCcc-----ccchhhhcccceEEecCCC
Q 016800 189 FFICNYIS-----RIIEPLASRCAKFRFKPLS 215 (382)
Q Consensus 189 Il~~~~~~-----~l~~~l~sr~~~i~~~~~~ 215 (382)
|++++... .+.+++++||..+.+++|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 88887654 5789999999999998875
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.72 E-value=1.2e-16 Score=152.79 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=136.6
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEe
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~ 119 (382)
+...+..|++++|++..++.+..++.. ....++||+||||||||++|+++++.+ +..++.+
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~v 269 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLI 269 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEE
Confidence 456678899999999999998887753 223349999999999999999999986 4567777
Q ss_pred ecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc--CC
Q 016800 120 NASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY--SK 184 (382)
Q Consensus 120 ~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~--~~ 184 (382)
++.+... .......+.......... ...+|+|||+|.+. ...++.|+..|+.. ..
T Consensus 270 n~~~l~~~~~g~~~~~~~~~f~~A~~~----------~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 270 NGPEIMSKLAGESESNLRKAFEEAEKN----------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp EHHHHHTSCTTHHHHHHHHHHHHHHHT----------CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred EchHhhhhhcchhHHHHHHHHHHHHhc----------CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 7643211 111112222222222111 45799999997664 35688999999964 34
Q ss_pred ceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 016800 185 VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQGA 260 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gd-lr~a~~~l~~~ 260 (382)
.+++|.+||.+..+.+.+++ |+. .+.|++|+.++..++|...++..... .+..+..++..+.|. .+.+.+++..+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A 418 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEA 418 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHH
Confidence 67788889999999999998 665 79999999999999998877654433 223467788888774 44444455555
Q ss_pred HHhc
Q 016800 261 ARLF 264 (382)
Q Consensus 261 ~~~~ 264 (382)
+..+
T Consensus 419 ~~~a 422 (489)
T 3hu3_A 419 ALQA 422 (489)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.71 E-value=1.3e-18 Score=154.92 Aligned_cols=205 Identities=21% Similarity=0.223 Sum_probs=137.1
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
++.+..|++++|++.+++.+...+.. ...+ +++|+||||||||++|+++++.+..+ ++.+++
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~------~~~v~~ 77 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP------FFSMGG 77 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC------CCCCCS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC------EEEech
Confidence 44567899999999988888776651 2223 49999999999999999999987432 333333
Q ss_pred CCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH---------------HHHHHHHHHH
Q 016800 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---------------AQNALRRTME 180 (382)
Q Consensus 122 ~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~---------------~~~~Ll~~le 180 (382)
.+.. +...++..+..... ..+.+|+|||+|.+... .++.|+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKK--------------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD 143 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHH--------------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTT
T ss_pred HHHHHhhcchHHHHHHHHHHHHHh--------------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhh
Confidence 3211 00111111111110 04469999999998643 2455666666
Q ss_pred hcC---CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHH
Q 016800 181 TYS---KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRA 253 (382)
Q Consensus 181 ~~~---~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a 253 (382)
... ..+.+|.++|.+..+.+.+.+ |+. .+.|++|+.++...++...++..... ++..+..++..+.| ..+.+
T Consensus 144 ~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl 222 (268)
T 2r62_A 144 GFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADL 222 (268)
T ss_dssp CSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHH
T ss_pred CcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHH
Confidence 543 236678888888888889988 664 78999999999999998877544321 22235667777766 45577
Q ss_pred HHHHHHHHHhc----CCCCChhhHhhhhCC
Q 016800 254 ITYLQGAARLF----GSSITSKDLISVSGV 279 (382)
Q Consensus 254 ~~~l~~~~~~~----~~~It~~~v~~~~~~ 279 (382)
.++++.+...+ ...|+.+++..++..
T Consensus 223 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 223 ANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp HHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 77777766654 357899988887754
No 63
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.70 E-value=1.2e-16 Score=142.50 Aligned_cols=181 Identities=13% Similarity=0.192 Sum_probs=118.7
Q ss_pred CcccCcHHHHHHH-------HHHHH---cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc---ch
Q 016800 61 KDVAHQEEVVRVL-------TNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR---GI 127 (382)
Q Consensus 61 ~~~~g~~~~~~~l-------~~~l~---~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~---~~ 127 (382)
..++|+....+.+ .+.+. .....++||+||||||||++|+++++.+ ...++.+++++.. ..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~------~~~~~~i~~~~~~~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES------NFPFIKICSPDKMIGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH------TCSEEEEECGGGCTTCCH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh------CCCEEEEeCHHHhcCCch
Confidence 4566765554333 33444 2223349999999999999999999986 3456666665321 11
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC----------CHHHHHHHHHHHHh---cCCceEEEEeecC
Q 016800 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM----------TEDAQNALRRTMET---YSKVTRFFFICNY 194 (382)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l----------~~~~~~~Ll~~le~---~~~~~~~Il~~~~ 194 (382)
......+.......... +..+|+|||+|.+ .....+.|...++. ....+.+|.++|.
T Consensus 107 ~~~~~~~~~~~~~~~~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAYKS----------QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR 176 (272)
T ss_dssp HHHHHHHHHHHHHHHTS----------SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred HHHHHHHHHHHHHHHhc----------CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence 11111222222211111 5689999999887 44556666666664 3345567777887
Q ss_pred ccccch-hhhccc-ceEEecCCCH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHHHH
Q 016800 195 ISRIIE-PLASRC-AKFRFKPLSE-EVMSSRVLHICNEEGLNLDAEALSTLSSISQG-----DLRRAITYLQGAAR 262 (382)
Q Consensus 195 ~~~l~~-~l~sr~-~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-----dlr~a~~~l~~~~~ 262 (382)
+..+.+ .+.+|+ ..+.|++++. +++..++.. .+ .++++++..+++.+.| |+|.+++.++.+..
T Consensus 177 ~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~~-~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 177 KDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----LG-NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp HHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----HT-CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred hhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----cC-CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 776666 678885 5889988887 676666643 22 4789999999999988 99999999987654
No 64
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=2.2e-16 Score=147.36 Aligned_cols=205 Identities=18% Similarity=0.205 Sum_probs=134.5
Q ss_pred CcccCcHHHHHHHHHHHH----c-------------------------C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 016800 61 KDVAHQEEVVRVLTNTLE----T-------------------------A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~----~-------------------------~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~ 110 (382)
+.++||+++++.+...+. . . ...+++|+||||||||++|+++++.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~--- 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD--- 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT---
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC---
Confidence 357899999998887762 1 1 234599999999999999999999872
Q ss_pred CCCCceEEeecCCCcch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HH
Q 016800 111 LYKSRVLELNASDDRGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQ 172 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~ 172 (382)
..++.+++...... ......+......... ......+.+++|||++.+... .+
T Consensus 98 ---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~ 168 (376)
T 1um8_A 98 ---IPIAISDATSLTEAGYVGEDVENILTRLLQASDW------NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQ 168 (376)
T ss_dssp ---CCEEEEEGGGCC--------CTHHHHHHHHHTTT------CHHHHTTSEEEEETGGGC--------------CHHHH
T ss_pred ---CCEEEecchhhhhcCcCCccHHHHHHHHHhhccc------hhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHH
Confidence 34566665432110 1111122222111100 000014569999999999887 89
Q ss_pred HHHHHHHHhcC---------------------CceEEEEeecC-------------------------------------
Q 016800 173 NALRRTMETYS---------------------KVTRFFFICNY------------------------------------- 194 (382)
Q Consensus 173 ~~Ll~~le~~~---------------------~~~~~Il~~~~------------------------------------- 194 (382)
+.|+++|++.. .+..||+++|.
T Consensus 169 ~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~ 248 (376)
T 1um8_A 169 QALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQT 248 (376)
T ss_dssp HHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCH
T ss_pred HHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCH
Confidence 99999999641 33456666551
Q ss_pred ----ccccchhhhccc-ceEEecCCCHHHHHHHHHH----HHH-------Hh--CCCCCHHHHHHHHHhcC---CCHHHH
Q 016800 195 ----ISRIIEPLASRC-AKFRFKPLSEEVMSSRVLH----ICN-------EE--GLNLDAEALSTLSSISQ---GDLRRA 253 (382)
Q Consensus 195 ----~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~----~~~-------~~--~~~~~~~~~~~l~~~s~---gdlr~a 253 (382)
...+.+.+.+|+ .++.|++++.+++..++.. +++ .. ++.+++++++.|++.+. |+.|.+
T Consensus 249 ~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L 328 (376)
T 1um8_A 249 HDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGL 328 (376)
T ss_dssp HHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGH
T ss_pred HHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHH
Confidence 113568889999 5899999999999998862 211 11 34689999999999865 999999
Q ss_pred HHHHHHHHHhc-----C-----CCCChhhHhhhh
Q 016800 254 ITYLQGAARLF-----G-----SSITSKDLISVS 277 (382)
Q Consensus 254 ~~~l~~~~~~~-----~-----~~It~~~v~~~~ 277 (382)
.+.++.+.... + ..||.++|....
T Consensus 329 ~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 329 RAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 99998876531 1 136777776644
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=1.2e-16 Score=162.17 Aligned_cols=185 Identities=20% Similarity=0.305 Sum_probs=134.7
Q ss_pred CcccCcHHHHHHHHHHHHcCC-------CC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHH-
Q 016800 61 KDVAHQEEVVRVLTNTLETAN-------CP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV- 130 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-------~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~- 130 (382)
++++|++.+++.+...+...+ .| ++||+||||||||++|+++++.+.+. ...++.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD---EESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEechhcccccccc
Confidence 568899999988888876432 12 59999999999999999999998543 246777777543211000
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecCccc--
Q 016800 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYISR-- 197 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~~~-- 197 (382)
...+...... .++.||+|||++.++++.++.|++.|++. ..+++||++||.+..
T Consensus 568 ~~~l~~~~~~-------------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~ 634 (758)
T 3pxi_A 568 GGQLTEKVRR-------------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEK 634 (758)
T ss_dssp ---CHHHHHH-------------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCC
T ss_pred cchhhHHHHh-------------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhH
Confidence 0111111111 14569999999999999999999999983 356789999985432
Q ss_pred ----------cchhhhccc-ceEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHhc---CCCHHHHH
Q 016800 198 ----------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEALSTLSSIS---QGDLRRAI 254 (382)
Q Consensus 198 ----------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~s---~gdlr~a~ 254 (382)
+.+.+.+|+ .++.|+|++.+++..++...+... .+.+++++++.|++.+ .|+.|.+.
T Consensus 635 ~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~ 714 (758)
T 3pxi_A 635 DKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLR 714 (758)
T ss_dssp HHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHH
T ss_pred HHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHH
Confidence 678999999 599999999999999988876542 3458999999998753 57788877
Q ss_pred HHHHHHH
Q 016800 255 TYLQGAA 261 (382)
Q Consensus 255 ~~l~~~~ 261 (382)
+.++...
T Consensus 715 ~~i~~~v 721 (758)
T 3pxi_A 715 RAIQKHV 721 (758)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7777543
No 66
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.69 E-value=5.1e-16 Score=148.13 Aligned_cols=208 Identities=24% Similarity=0.240 Sum_probs=142.3
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEE
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~ 118 (382)
|.+. .+.+|++++|+++++..+.+.+.. ...+ +++|+||||||||+++++++..+. ..++.
T Consensus 22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~------~~~i~ 94 (499)
T 2dhr_A 22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFIT 94 (499)
T ss_dssp ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CCEEE
T ss_pred eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEE
Confidence 4444 567999999999998887766532 1223 399999999999999999999872 45667
Q ss_pred eecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc
Q 016800 119 LNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY 182 (382)
Q Consensus 119 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~ 182 (382)
+++.+... .......+......... ....+++|||+|.+.. ...+.|+..|+..
T Consensus 95 i~g~~~~~~~~g~~~~~v~~lfq~a~~----------~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 95 ASGSDFVEMFVGVGAARVRDLFETAKR----------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp EEGGGGTSSCTTHHHHHHHHHTTTSSS----------SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred EehhHHHHhhhhhHHHHHHHHHHHHHh----------cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 77654211 11122223222221110 1346999999987732 2345566555543
Q ss_pred C--CceEEEEeecCccccchhhhcc--cc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHH
Q 016800 183 S--KVTRFFFICNYISRIIEPLASR--CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAIT 255 (382)
Q Consensus 183 ~--~~~~~Il~~~~~~~l~~~l~sr--~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gdl-r~a~~ 255 (382)
. ..+.++.++|.++.+.+++.++ +. .+.+++|+.++..++++..++ +..+++++ +..++..+.|+. +.+.+
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~ 242 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLEN 242 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHH
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHH
Confidence 2 3456677778888899999884 44 899999999999999876553 34455443 788999999987 78888
Q ss_pred HHHHHHHhc----CCCCChhhHhhhh
Q 016800 256 YLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 256 ~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
++..++..+ ...|+.+++..++
T Consensus 243 lv~~Aa~~A~~~~~~~It~~dl~~al 268 (499)
T 2dhr_A 243 LLNEAALLAAREGRRKITMKDLEEAA 268 (499)
T ss_dssp HHHHHHHHHTTTCCSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCHHHHHHHH
Confidence 888777654 2469988887766
No 67
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.68 E-value=2.2e-15 Score=132.84 Aligned_cols=206 Identities=24% Similarity=0.240 Sum_probs=135.1
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
...+.+|++++|.++++..+.+.... -..+ +++|+||+|+||||++++++..+. ..++.+++
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~------~~~i~~~~ 82 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASG 82 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeeH
Confidence 34456899999999888777665432 1222 399999999999999999999872 34455554
Q ss_pred CCCc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhcC--
Q 016800 122 SDDR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS-- 183 (382)
Q Consensus 122 ~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~-- 183 (382)
.+.. ........+.......... ...++++||+|.+.. ...+.++..++...
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAKRH----------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHTTS----------SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhc----------CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 3210 0111122222222221111 347999999976521 12355666665433
Q ss_pred CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHHHHH
Q 016800 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQ 258 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gdl-r~a~~~l~ 258 (382)
....++.+++.+..+.+.+.+ |+. .+.+++|+.++..++++..++ +..++++. +..++..+.|+. +.+.+.+.
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 334566677888999999998 554 789999999999999987664 34454443 778899998865 67777777
Q ss_pred HHHHhc----CCCCChhhHhhhh
Q 016800 259 GAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 259 ~~~~~~----~~~It~~~v~~~~ 277 (382)
.++..+ ...|+.+++++++
T Consensus 231 ~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 231 EAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHhcCCCcCHHHHHHHh
Confidence 666544 2468888887654
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=5.4e-16 Score=157.60 Aligned_cols=183 Identities=21% Similarity=0.256 Sum_probs=133.7
Q ss_pred CcccCcHHHHHHHHHHHHcC--------CC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc-----
Q 016800 61 KDVAHQEEVVRVLTNTLETA--------NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG----- 126 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~--------~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~----- 126 (382)
.+++|+++++..+...+... ++ .++||+||||||||++|+++++.+ ...++.++++....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l------~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH------TCEEEEEEGGGCSSSSCCS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh------cCCEEEEechhhcchhhHh
Confidence 46889999998887777532 11 249999999999999999999988 24456666543211
Q ss_pred ---------hHH-HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------Cc
Q 016800 127 ---------INV-VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KV 185 (382)
Q Consensus 127 ---------~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~ 185 (382)
+.. ....+...... .++.||+|||++.++++.++.|++.|++.. .+
T Consensus 532 ~l~g~~~g~~g~~~~~~l~~~~~~-------------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQGGLLTDAVIK-------------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp SSCCCCSCSHHHHHTTHHHHHHHH-------------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred hhcCCCCCCcCccccchHHHHHHh-------------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 000 00111111111 156899999999999999999999999753 45
Q ss_pred eEEEEeecCcc-------------------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHh---------
Q 016800 186 TRFFFICNYIS-------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE--------- 230 (382)
Q Consensus 186 ~~~Il~~~~~~-------------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~--------- 230 (382)
+.||+++|... .+.+.+.+|+. ++.|++++.+++..++...+.+.
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~ 678 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 678 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 77899998643 56789999994 89999999999999998877632
Q ss_pred CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Q 016800 231 GLNLDAEALSTLSSIS---QGDLRRAITYLQGAAR 262 (382)
Q Consensus 231 ~~~~~~~~~~~l~~~s---~gdlr~a~~~l~~~~~ 262 (382)
.+.+++++++.+++.+ .++.|.+.+.++....
T Consensus 679 ~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 679 SLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred EEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 2468999999999876 4457777777776553
No 69
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.67 E-value=8.7e-15 Score=138.18 Aligned_cols=231 Identities=16% Similarity=0.192 Sum_probs=147.6
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHH-Hc---C---CCCcEEE--eCCCCCCHHHHHHHHHHHhcCCC---C
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ET---A---NCPHMLF--YGPPGTGKTTTALAIAHQLFGPE---L 111 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l-~~---~---~~~~lll--~Gp~G~GKt~la~~la~~l~~~~---~ 111 (382)
.+....++..+|.| ++++|+++.++.+..++ .. + ...+++| +||+|+|||++++.+++.+.... .
T Consensus 8 i~~~~~~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~ 84 (412)
T 1w5s_A 8 LFKDRRVFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEG 84 (412)
T ss_dssp CBSCGGGGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccHhhcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccC
Confidence 44566777777777 67899999888888777 42 2 3335888 99999999999999998863210 0
Q ss_pred CCCceEEeecCCCcchHH-HHHHHHHHHHhhhcCCCCCCC--------C-CCCCcEEEEEeCCCCCC------HHHHHHH
Q 016800 112 YKSRVLELNASDDRGINV-VRTKIKTFAAVAVGSGQRRGG--------Y-PCPPYKIIILDEADSMT------EDAQNAL 175 (382)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~--------~-~~~~~~vliiDe~d~l~------~~~~~~L 175 (382)
....++.+++........ +...+..+.......+..... . ..+++.+|+|||++.+. .+....|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l 164 (412)
T 1w5s_A 85 LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTL 164 (412)
T ss_dssp CCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHH
Confidence 123456666532222211 111111110000000000000 0 01256799999999974 3566667
Q ss_pred HHHHHhcC-----CceEEEEeecCcc---ccc---hhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHH
Q 016800 176 RRTMETYS-----KVTRFFFICNYIS---RII---EPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALST 241 (382)
Q Consensus 176 l~~le~~~-----~~~~~Il~~~~~~---~l~---~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~ 241 (382)
++.+++.+ ..+.+|++++.+. .+. +.+.+++. .+.|+|++.+++.+++...+...+. .++++++..
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 77777654 5666787776543 233 45555543 4999999999999999887765432 478999999
Q ss_pred HHHhcC------CCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 242 LSSISQ------GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 242 l~~~s~------gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
+++.++ |+++.++.++..+...+ ...++.+++..+.
T Consensus 245 i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 245 ISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp HHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 999999 99999999988765432 2457777766544
No 70
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.65 E-value=9.3e-15 Score=130.53 Aligned_cols=204 Identities=23% Similarity=0.235 Sum_probs=132.8
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcC-----------CC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETA-----------NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.+.+|++++|.++++..+.+....- .. ++++|+||+|+||||++++++..+. ..++.+++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~------~~~i~~~~~~ 108 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASGSD 108 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC------CCEEEecHHH
Confidence 4568999999999887776655321 12 2399999999999999999999872 3455555432
Q ss_pred Cc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHH---HHHHHHHHhcC--Cc
Q 016800 124 DR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQ---NALRRTMETYS--KV 185 (382)
Q Consensus 124 ~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~---~~Ll~~le~~~--~~ 185 (382)
.. ........+....+..... ...++++||++.+. .... +.++..++... ..
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~~----------~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKRH----------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHTS----------CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HHHHHhhHHHHHHHHHHHHHHhc----------CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 10 0111122222222222111 34699999997652 1122 33444444322 23
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHHHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQGA 260 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gdl-r~a~~~l~~~ 260 (382)
..++.+++.+..+.+.+.+ |+. .+.|++|+.++..++++..++ +..+++++ +..++..+.|+. +.+.+.++.+
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566677888889999988 554 799999999999999987664 34454443 778899998877 6666777766
Q ss_pred HHhc----CCCCChhhHhhhh
Q 016800 261 ARLF----GSSITSKDLISVS 277 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~ 277 (382)
+..+ ...|+.+++.+++
T Consensus 257 ~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHhCCCCcCHHHHHHHh
Confidence 6543 2468888887654
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=2.7e-16 Score=161.33 Aligned_cols=189 Identities=23% Similarity=0.311 Sum_probs=137.6
Q ss_pred CcccCcHHHHHHHHHHHHcCC--------C-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETAN--------C-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--------~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
++++|++..++.+...+...+ + .+++|+||+|||||++|+++++.+.+.+ ..++.++++.........
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCCSSGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhccchhHHH
Confidence 578999999998888876432 1 2499999999999999999999986542 466777776432211000
Q ss_pred HHH------------HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEE
Q 016800 132 TKI------------KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRF 188 (382)
Q Consensus 132 ~~l------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~ 188 (382)
..+ ..+... .. ...+.+|+|||++.++++.++.|+++|++.. .++.|
T Consensus 635 ~l~g~~~~~~G~~~~g~l~~~-~~---------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~ii 704 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGGQLTEA-VR---------RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVI 704 (854)
T ss_dssp GC--------------CHHHH-HH---------HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEE
T ss_pred HHcCCCCCCcCccccchHHHH-HH---------hCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEE
Confidence 000 000000 00 0145799999999999999999999999763 36778
Q ss_pred EEeecCc--------------------------cccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHh---------CC
Q 016800 189 FFICNYI--------------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE---------GL 232 (382)
Q Consensus 189 Il~~~~~--------------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~---------~~ 232 (382)
|++||.. ..+.+.|.+|+. ++.|.|++.+++..++...+... .+
T Consensus 705 I~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~ 784 (854)
T 1qvr_A 705 ILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISL 784 (854)
T ss_dssp EEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred EEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 9999862 235577889994 88999999999999988766531 24
Q ss_pred CCCHHHHHHHHHhcC---CCHHHHHHHHHHHHH
Q 016800 233 NLDAEALSTLSSISQ---GDLRRAITYLQGAAR 262 (382)
Q Consensus 233 ~~~~~~~~~l~~~s~---gdlr~a~~~l~~~~~ 262 (382)
.+++++++.|++.+. |+.|.+.+.++....
T Consensus 785 ~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 785 ELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp EECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred EECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 589999999999764 999999998887653
No 72
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.65 E-value=3.5e-15 Score=147.31 Aligned_cols=224 Identities=19% Similarity=0.199 Sum_probs=150.1
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc----
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR---- 125 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~---- 125 (382)
....+|+|..|++++|++.+++.+...+..+. +++|+||+|+|||+++++++..+.+... ..+.+.+....
T Consensus 30 ~~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~---~~~~~~~~~~~~~~p 104 (604)
T 3k1j_A 30 TEEIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETL---EDILVFPNPEDENMP 104 (604)
T ss_dssp GGGSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSC---EEEEEECCTTCTTSC
T ss_pred cCcccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccC---CeEEEeCCcccccCC
Confidence 34568999999999999999999999998874 7999999999999999999998743321 11111111000
Q ss_pred --------chHHHHHHHHHHHHh---------------------------------------------hh-cCCCCCCCC
Q 016800 126 --------GINVVRTKIKTFAAV---------------------------------------------AV-GSGQRRGGY 151 (382)
Q Consensus 126 --------~~~~~~~~l~~~~~~---------------------------------------------~~-~~~~~~~~~ 151 (382)
....+.+........ .. ......++.
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~ 184 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGL 184 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----C
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCc
Confidence 001111111110000 00 000000000
Q ss_pred -------------CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc---------------------CCceEEEEeecCc--
Q 016800 152 -------------PCPPYKIIILDEADSMTEDAQNALRRTMETY---------------------SKVTRFFFICNYI-- 195 (382)
Q Consensus 152 -------------~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---------------------~~~~~~Il~~~~~-- 195 (382)
......+++|||++.+++..++.|++.|++. +..+++|+++|..
T Consensus 185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 185 GTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp CCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred cccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHH
Confidence 0124459999999999999999999999843 2356789999875
Q ss_pred cccchhhhcccc----eEEecC---CCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHhc---CC-------CHHHH
Q 016800 196 SRIIEPLASRCA----KFRFKP---LSEEVMSSRVLHICNEEG-----LNLDAEALSTLSSIS---QG-------DLRRA 253 (382)
Q Consensus 196 ~~l~~~l~sr~~----~i~~~~---~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~l~~~s---~g-------dlr~a 253 (382)
..+.++|.+||. .+.|+. ...+.+..++..+++..+ ..++++++..|++.+ .| ++|.+
T Consensus 265 ~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 265 DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 578999999995 455543 355667777766655432 568999999998865 55 69999
Q ss_pred HHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 254 ITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 254 ~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
.++++.+...+ ...|+.++|.+++.
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 99998766544 35789999888774
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.57 E-value=4.8e-14 Score=134.71 Aligned_cols=207 Identities=15% Similarity=0.124 Sum_probs=130.8
Q ss_pred CcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHh
Q 016800 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (382)
..++|++++++.+...+..+. |+||+||||||||++|+++++.+... ..+...++... ....+..........
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~~----~~f~~~~~~~~-t~~dL~G~~~~~~~~ 94 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNA----RAFEYLMTRFS-TPEEVFGPLSIQALK 94 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSSC----CEEEEECCTTC-CHHHHHCCBC-----
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhhh----hHHHHHHHhcC-CHHHhcCcccHHHHh
Confidence 468899999999888887765 79999999999999999999987221 12233333221 111110000000000
Q ss_pred hhcCCCCCCCCCCC---CcEEEEEeCCCCCCHHHHHHHHHHHHhcC---------Cce-EEEEeecCccc---cchhhhc
Q 016800 141 AVGSGQRRGGYPCP---PYKIIILDEADSMTEDAQNALRRTMETYS---------KVT-RFFFICNYISR---IIEPLAS 204 (382)
Q Consensus 141 ~~~~~~~~~~~~~~---~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------~~~-~~Il~~~~~~~---l~~~l~s 204 (382)
..+ .......+ ...|++|||++.++++.++.|+..|++.. ... .+|++||.... ..+++.+
T Consensus 95 --~~g-~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld 171 (500)
T 3nbx_X 95 --DEG-RYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD 171 (500)
T ss_dssp --------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT
T ss_pred --hch-hHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH
Confidence 000 00000011 23599999999999999999999998532 112 34777775322 4468999
Q ss_pred ccc-eEEecCCCH-HHHHHHHHHHH-----------------------HHhCCCCCHHHHHHHHHhc----------CCC
Q 016800 205 RCA-KFRFKPLSE-EVMSSRVLHIC-----------------------NEEGLNLDAEALSTLSSIS----------QGD 249 (382)
Q Consensus 205 r~~-~i~~~~~~~-~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~l~~~s----------~gd 249 (382)
|+. .+.+++|+. ++...++.... ...++.+++++++++++.. +.+
T Consensus 172 RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS 251 (500)
T 3nbx_X 172 RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVS 251 (500)
T ss_dssp TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCC
T ss_pred HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccc
Confidence 986 588888887 55666665432 1126678999998888766 568
Q ss_pred HHHHHHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 250 LRRAITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 250 lr~a~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
.|.++..+..+...+ ...++.++|. ++.
T Consensus 252 ~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~ 283 (500)
T 3nbx_X 252 DRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLK 283 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGG
T ss_pred hhHHHHHHHHHHHHHhhcCCccccchHHH-HHH
Confidence 888777766544333 3578999888 443
No 74
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.57 E-value=8.1e-15 Score=136.05 Aligned_cols=190 Identities=21% Similarity=0.239 Sum_probs=124.4
Q ss_pred cccCcHHHHHHHHHHHH-------------cC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 62 DVAHQEEVVRVLTNTLE-------------TA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~-------------~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
.++|++.+++.+...+. .. ...+++|+||||||||++|+++++.+ +..++.+++.+...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~~l~~ 89 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL------DVPFTMADATTLTE 89 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechHHhcc
Confidence 46899999998888773 11 23359999999999999999999987 35567777653221
Q ss_pred hH----HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHhc------
Q 016800 127 IN----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETY------ 182 (382)
Q Consensus 127 ~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~~------ 182 (382)
.. .....+.......... +......+|+|||+|.++.. .++.|++.|+..
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~ 163 (363)
T 3hws_A 90 AGYVGEDVENIIQKLLQKCDYD------VQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 163 (363)
T ss_dssp CHHHHHHHTHHHHHHHHHTTTC------HHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------
T ss_pred cccccccHHHHHHHHHHHhhhh------HHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccC
Confidence 11 1112222221111000 00013459999999988765 899999999921
Q ss_pred ---------------CCceEEEEeecCc----------cc-----------------------------------cchhh
Q 016800 183 ---------------SKVTRFFFICNYI----------SR-----------------------------------IIEPL 202 (382)
Q Consensus 183 ---------------~~~~~~Il~~~~~----------~~-----------------------------------l~~~l 202 (382)
..+..||++++.. .+ +.+.+
T Consensus 164 ~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l 243 (363)
T 3hws_A 164 QGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 243 (363)
T ss_dssp ----------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHH
T ss_pred ccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHH
Confidence 0233445554421 11 57888
Q ss_pred hcccc-eEEecCCCHHHHHHHHHH----HHH-------HhC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHh
Q 016800 203 ASRCA-KFRFKPLSEEVMSSRVLH----ICN-------EEG--LNLDAEALSTLSSIS---QGDLRRAITYLQGAARL 263 (382)
Q Consensus 203 ~sr~~-~i~~~~~~~~~~~~~l~~----~~~-------~~~--~~~~~~~~~~l~~~s---~gdlr~a~~~l~~~~~~ 263 (382)
.+|+. ++.|.|++.+++.+++.. +.+ ..+ +.+++++++.|++.+ .++.|.+.+.++.....
T Consensus 244 ~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~ 321 (363)
T 3hws_A 244 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLD 321 (363)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHH
T ss_pred hcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHH
Confidence 99998 556999999998888764 222 123 347999999998753 66778888888776643
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.55 E-value=4.4e-14 Score=141.19 Aligned_cols=175 Identities=19% Similarity=0.203 Sum_probs=123.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.|...+.- + ..| ++|||||||||||++|+++++++ +..++.+++++.
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~~l 274 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEI 274 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhHHh
Confidence 5889999999888888877632 1 223 39999999999999999999987 456777776542
Q ss_pred c--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhcC--CceEEE
Q 016800 125 R--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KVTRFF 189 (382)
Q Consensus 125 ~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~~--~~~~~I 189 (382)
. ........+...+...... .+.||+|||+|.+.+ ...+.|+..|+... ..+.+|
T Consensus 275 ~sk~~gese~~lr~lF~~A~~~----------~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAEKN----------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHTTS----------CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred hcccchHHHHHHHHHHHHHHHc----------CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 1 1112222333333332221 567999999998842 34567888887643 356778
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gd 249 (382)
.+||.++.+++++++ |+. .++++.|+.++..++|+..++..... ++-.+..++..+.|-
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~Gf 406 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGH 406 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSC
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCC
Confidence 889999999999998 776 79999999999999997665433221 222367788877553
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.54 E-value=7.7e-13 Score=118.77 Aligned_cols=148 Identities=14% Similarity=0.201 Sum_probs=94.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEE
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v 158 (382)
+||+||||||||++|+++++.+ +..++.+++++.. ....++..+........ . ..+.|
T Consensus 39 lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~-~---------~~~~v 102 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-K---------GNMCC 102 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT-T---------SSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh-c---------CCCeE
Confidence 8999999999999999999998 3556677654311 11122222222111101 1 15579
Q ss_pred EEEeCCCCCCH-------------HHHHHHHHHHHh-------------cCCceEEEEeecCccccchhhhc--ccceEE
Q 016800 159 IILDEADSMTE-------------DAQNALRRTMET-------------YSKVTRFFFICNYISRIIEPLAS--RCAKFR 210 (382)
Q Consensus 159 liiDe~d~l~~-------------~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~~l~~~l~s--r~~~i~ 210 (382)
|+|||+|.+.. ..++.|+..++. ...++.+|++||.++.+++++++ |+..+-
T Consensus 103 l~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i 182 (293)
T 3t15_A 103 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182 (293)
T ss_dssp EEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEE
T ss_pred EEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeE
Confidence 99999998754 234788888862 22467899999999999999986 666433
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-HhcCCCHH
Q 016800 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLS-SISQGDLR 251 (382)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~s~gdlr 251 (382)
+ .|+.++..++++..+...+ ++.+.+..+. ..++.++.
T Consensus 183 ~-~P~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 183 W-APTREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp E-CCCHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred e-CcCHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 3 4699999999998887665 4555555444 44555654
No 77
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.53 E-value=1.2e-12 Score=116.12 Aligned_cols=171 Identities=19% Similarity=0.197 Sum_probs=109.5
Q ss_pred CCCCcccCcHHHHHHHHHHHH----------c--CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE----------T--ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~----------~--~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.+...+. . -..+ +++|+||||+|||+++++++..+ ...++.+++.+.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~------~~~~i~i~g~~l 80 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES------GLNFISVKGPEL 80 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEEETTTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc------CCCEEEEEcHHH
Confidence 578999999999988876542 1 1222 39999999999999999999986 234677776553
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhcC--CceEEE
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KVTRFF 189 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~~--~~~~~I 189 (382)
.. .......+.......... .+.++++||++.+.. ...+.++..|+... ....++
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~~----------~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKNS----------APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIM 150 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHT----------CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhc----------CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEE
Confidence 22 222233333333322111 346999999998632 12355666665432 345566
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHh-CCCCC-HHHHHHHHH
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEE-GLNLD-AEALSTLSS 244 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~l~~ 244 (382)
.++|.++.+++++.+ |+. .+.++.|+.++..++++..++.. ...++ +-.+..++.
T Consensus 151 a~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~ 210 (274)
T 2x8a_A 151 AATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAG 210 (274)
T ss_dssp EEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHT
T ss_pred eecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHH
Confidence 778999999999987 776 78999999999999998876542 22222 223556665
No 78
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.52 E-value=7.8e-14 Score=111.74 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=91.3
Q ss_pred cccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (382)
+++|+...++.+.+.++. ....+++|+||||||||++|+++++..... ...++ +++............+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~---~~~~v-~~~~~~~~~~~~~~~~~~--- 74 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA---QGEFV-YRELTPDNAPQLNDFIAL--- 74 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT---TSCCE-EEECCTTTSSCHHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc---CCCEE-EECCCCCcchhhhcHHHH---
Confidence 678988888888777653 233459999999999999999999875321 23455 776643222112221211
Q ss_pred hhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc-------ccchhhhcccc--eEE
Q 016800 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-------RIIEPLASRCA--KFR 210 (382)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~-------~l~~~l~sr~~--~i~ 210 (382)
. ...+++|||++.++.+.+..|+..++..+..+++|+++|... .+.+.+..|+. .+.
T Consensus 75 -a-------------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~ 140 (145)
T 3n70_A 75 -A-------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIA 140 (145)
T ss_dssp -H-------------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEE
T ss_pred -c-------------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEe
Confidence 1 234899999999999999999999988888888999998642 34566666655 566
Q ss_pred ecCC
Q 016800 211 FKPL 214 (382)
Q Consensus 211 ~~~~ 214 (382)
++|+
T Consensus 141 lPpL 144 (145)
T 3n70_A 141 CLPL 144 (145)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6665
No 79
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.52 E-value=3.6e-13 Score=125.97 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=87.1
Q ss_pred cEEEEEeCCCCCCH------------HHHHHHHHHHHhc----------CCceEEEEee----cCccccchhhhcccce-
Q 016800 156 YKIIILDEADSMTE------------DAQNALRRTMETY----------SKVTRFFFIC----NYISRIIEPLASRCAK- 208 (382)
Q Consensus 156 ~~vliiDe~d~l~~------------~~~~~Ll~~le~~----------~~~~~~Il~~----~~~~~l~~~l~sr~~~- 208 (382)
..++++||+|++.. ..|++|++.+|.. ..++.||+++ +++..+.+.+++|+.+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 45899999998853 2678999999952 3456677776 2445577999999995
Q ss_pred EEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHHhc---
Q 016800 209 FRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS--------QGDLRRAITYLQGAARLF--- 264 (382)
Q Consensus 209 i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s--------~gdlr~a~~~l~~~~~~~--- 264 (382)
+.|++++.+++..++.. .+..+++ .++++++..|++.+ .+..|.+.+.++++....
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~ 410 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 410 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhh
Confidence 89999999999999841 1222344 58999999999852 466777777777665331
Q ss_pred --C-----CCCChhhHhhhhCC
Q 016800 265 --G-----SSITSKDLISVSGV 279 (382)
Q Consensus 265 --~-----~~It~~~v~~~~~~ 279 (382)
+ -.||.+.|...++.
T Consensus 411 ~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 411 ASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp GGGCTTCEEEECHHHHHHHHTT
T ss_pred ccccCCCeEEEeHHHHHHhcCc
Confidence 1 12566666655543
No 80
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.47 E-value=5.3e-12 Score=116.21 Aligned_cols=189 Identities=14% Similarity=0.149 Sum_probs=121.9
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc------chHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRT 132 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (382)
.-..++|+++.++.|..++..+ +.++++||+|+|||++++.+++.. . ++.+++.... ....+..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P--GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S--EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C--cEEEEeecccccccCCCHHHHHH
Confidence 4467899999999999999875 579999999999999999999875 1 3444432210 1111111
Q ss_pred HHHHHHHh---------------hhcCCCCCCCC-----------CCCCcEEEEEeCCCCCCH-------HHHHHHHHHH
Q 016800 133 KIKTFAAV---------------AVGSGQRRGGY-----------PCPPYKIIILDEADSMTE-------DAQNALRRTM 179 (382)
Q Consensus 133 ~l~~~~~~---------------~~~~~~~~~~~-----------~~~~~~vliiDe~d~l~~-------~~~~~Ll~~l 179 (382)
.+...... ........... ...++.+|+|||++.+.. +....|...+
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 11100000 00000000000 000357999999999753 4455666666
Q ss_pred HhcCCceEEEEeecCcc---c------cchhhhccc-ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 016800 180 ETYSKVTRFFFICNYIS---R------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (382)
Q Consensus 180 e~~~~~~~~Il~~~~~~---~------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gd 249 (382)
+.. .++.+|+++.... . ...++..|. ..+.+.|++.++..+++...+...|..++++.+..++..++|+
T Consensus 160 ~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 160 DSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI 238 (350)
T ss_dssp HHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC
T ss_pred Hhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 654 4677888775432 1 122344444 4899999999999999988887778888999999999999999
Q ss_pred HHHHHHHHH
Q 016800 250 LRRAITYLQ 258 (382)
Q Consensus 250 lr~a~~~l~ 258 (382)
|..+.....
T Consensus 239 P~~l~~~~~ 247 (350)
T 2qen_A 239 PGWLVVFGV 247 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 986554443
No 81
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.46 E-value=1.2e-13 Score=138.08 Aligned_cols=179 Identities=21% Similarity=0.229 Sum_probs=110.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+++.|.+++++.|...+.. + ..+ .+|||||||||||.+|+++|.++ +.+++.++.++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l 547 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPEL 547 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchh
Confidence 4788999999999998876632 1 122 39999999999999999999997 455666654321
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHhcC-
Q 016800 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETYS- 183 (382)
Q Consensus 125 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~~~- 183 (382)
.+...++..+.... .. .+.||+|||+|.+... ..+.|+..|+...
T Consensus 548 ~s~~vGese~~vr~lF~~Ar----~~----------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKAR----QA----------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHH----TT----------CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred hccccchHHHHHHHHHHHHH----Hc----------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 12233444333321 11 4579999999988421 3577888888543
Q ss_pred -CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----cCCCHHHHHH
Q 016800 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI----SQGDLRRAIT 255 (382)
Q Consensus 184 -~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----s~gdlr~a~~ 255 (382)
..+.+|.+||.++.+++++.+ |+. .+.|+.|+.++..++++..+++.... ++-.++.|++. ||.|+..+.+
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHH
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 455667788999999999998 887 89999999999999887665443322 12235566654 4667776655
Q ss_pred HH
Q 016800 256 YL 257 (382)
Q Consensus 256 ~l 257 (382)
..
T Consensus 693 ~A 694 (806)
T 3cf2_A 693 RA 694 (806)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=5.5e-14 Score=137.90 Aligned_cols=209 Identities=18% Similarity=0.108 Sum_probs=124.6
Q ss_pred CCcccCcHHHHHHHHHHHHcCCC-----------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH
Q 016800 60 VKDVAHQEEVVRVLTNTLETANC-----------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~-----------~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
...++|++.+++.+...+..+.. .|+||+||||||||++|+++++.+........ ...++.+..+.
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~--~~~~~~~l~~~- 370 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG--KGSTAAGLTAA- 370 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT--TCSTTTTSEEE-
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC--Cccccccccce-
Confidence 35788999999888766666531 16999999999999999999987621110000 00011110000
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------CceEEEEeecCc
Q 016800 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNYI 195 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~ 195 (382)
...... . ... ....+....+...+++|||++.++++.++.|+..||+.. ..+.+|.++|+.
T Consensus 371 ~~~~~~---~-g~~--~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 371 VVREKG---T-GEY--YLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp CSSGGG---T-SSC--SEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred eeeccc---c-ccc--cccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 000000 0 000 000000000134599999999999999999999999642 356688888876
Q ss_pred c-------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHh-------------------------CCCCCH
Q 016800 196 S-------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE-------------------------GLNLDA 236 (382)
Q Consensus 196 ~-------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~ 236 (382)
. .+.+++.+|+. .+.+.+++..+...+...+.... ...+++
T Consensus 445 ~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ 524 (595)
T 3f9v_A 445 FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITS 524 (595)
T ss_dssp TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCC
T ss_pred CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCH
Confidence 5 78899999995 55555555544444444333321 224566
Q ss_pred HHHHHHHHh---------------cCCCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 237 EALSTLSSI---------------SQGDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 237 ~~~~~l~~~---------------s~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
++.+.|.+. .++++|.+.+++..+...+ ...|+.++|.+++
T Consensus 525 ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 525 EAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp CTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 666666654 4677777777766544333 4567877776654
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.45 E-value=1.6e-13 Score=109.65 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=87.0
Q ss_pred cccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (382)
+++|++..++.+.+.+.. ....+++|+||||||||++|+++++... .++.+++.... ....... ..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-------~~~~~~~~~~~-~~~~~~~----~~ 72 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-------PWVSPARVEYL-IDMPMEL----LQ 72 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-------CEECCSSTTHH-HHCHHHH----HH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-------CeEEechhhCC-hHhhhhH----HH
Confidence 678998888887777654 3334699999999999999999987651 56777776531 1111111 11
Q ss_pred hhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCceEEEEeecCc-cc----cchhhhcccc--eEEe
Q 016800 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYI-SR----IIEPLASRCA--KFRF 211 (382)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~-~~----l~~~l~sr~~--~i~~ 211 (382)
.. ...+++|||++.++.+.+..|++.+++. +..+++|+++|.. .. +.+.+..|+. .+.+
T Consensus 73 ~a-------------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~l 139 (143)
T 3co5_A 73 KA-------------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRI 139 (143)
T ss_dssp HT-------------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEE
T ss_pred hC-------------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeC
Confidence 11 3359999999999999999999999986 3567888888754 22 3455666655 4666
Q ss_pred cCC
Q 016800 212 KPL 214 (382)
Q Consensus 212 ~~~ 214 (382)
+|+
T Consensus 140 PpL 142 (143)
T 3co5_A 140 PPL 142 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.37 E-value=2.5e-12 Score=130.50 Aligned_cols=184 Identities=18% Similarity=0.189 Sum_probs=124.9
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
.+.+..|++++|++++++.+..++.. ....+++|+||||||||+++++++..+ ...++.++
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l------~~~~i~v~ 270 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLIN 270 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT------TCEEEEEE
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc------CCcEEEEE
Confidence 45567899999999999888888754 122349999999999999999999986 34566776
Q ss_pred cCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhcC--Cc
Q 016800 121 ASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS--KV 185 (382)
Q Consensus 121 ~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~~--~~ 185 (382)
+.+... .......+.......... ...++++||++.+. ....+.|+..++... ..
T Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~~----------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 271 GPEIMSKLAGESESNLRKAFEEAEKN----------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp HHHHSSSSTTHHHHHHHHHHHHHHHH----------CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred chHhhhhhhhhHHHHHHHHHHHHHhc----------CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 543211 111122222222221111 45699999998774 234677888887543 45
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~ 254 (382)
+.+|+++|.+..+.+.+++ |+. .+.+..|+.++...++...+....+. .+..+..++..+.|.....+
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl 411 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADL 411 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHH
Confidence 6778888999899999887 775 68999999999999998766543321 22335667777766554433
No 85
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.36 E-value=4.8e-12 Score=117.09 Aligned_cols=199 Identities=19% Similarity=0.182 Sum_probs=130.3
Q ss_pred CcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (382)
.+++|+...+..+...+.. .....++++|++|+||+.+|+++....... ..++.+||..... ..+...+-...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~----~~fv~vnc~~~~~-~~~~~~lfg~~ 203 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK----GAFVDLNCASIPQ-ELAESELFGHE 203 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC----SCEEEEESSSSCT-TTHHHHHHEEC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc----CCcEEEEcccCCh-HHHHHHhcCcc
Confidence 4677887666655554432 222349999999999999999998875322 2388899986422 22222111000
Q ss_pred HhhhcCCC--CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------cc
Q 016800 139 AVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RI 198 (382)
Q Consensus 139 ~~~~~~~~--~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l 198 (382)
.....+.. ..+.+......++++||++.|+.+.|..|++.+++.. ..+++|.+||..- ..
T Consensus 204 ~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 204 KGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp SCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred ccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence 00000000 0001111244589999999999999999999999642 2567888887532 24
Q ss_pred chhhhcccc--eEEecCCCH--HHHHHHHHHHH----HHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 199 IEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 199 ~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~----~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
.+.+..|+. .+.++|+.+ +++..++...+ ...+ ..+++++++.+..+. .||+|.+.+.++.++..+
T Consensus 284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 456777877 467888876 67666555443 3334 348999999999987 999999999999888765
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.36 E-value=1.2e-11 Score=115.31 Aligned_cols=211 Identities=18% Similarity=0.205 Sum_probs=136.7
Q ss_pred CCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHH
Q 016800 60 VKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (382)
+..++|....++.+.+.+..-. ..+++++|++||||+++|+.+...... ....++.+|+... ....+...+-..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r---~~~~fv~v~~~~~-~~~~~~~elfg~ 211 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR---SKEPFVALNVASI-PRDIFEAELFGY 211 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT---TTSCEEEEETTTS-CHHHHHHHHHCB
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC---CCCCeEEEecCCC-CHHHHHHHhcCC
Confidence 4568888777766666554322 223899999999999999999886422 2356888998864 222222211110
Q ss_pred HHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------c
Q 016800 138 AAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------R 197 (382)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~ 197 (382)
......+. ...+.+......++++||++.++.+.|..|++.+++.. ..+++|.+||... .
T Consensus 212 ~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 212 EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTS
T ss_pred CCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCC
Confidence 00000000 00111112245699999999999999999999999732 3567888887632 2
Q ss_pred cchhhhcccc--eEEecCCCH--HHHHHHHHHH----HHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-
Q 016800 198 IIEPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF- 264 (382)
Q Consensus 198 l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~----~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~- 264 (382)
..+.+..|.. .+.++|+.. +++..++... +.+.+. .++++++..+..+. .||+|.+.+.++.++..+
T Consensus 292 fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 292 FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp SCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 4455555665 566777654 6666555443 334443 37899999998776 899999999999988766
Q ss_pred CCCCChhhHh
Q 016800 265 GSSITSKDLI 274 (382)
Q Consensus 265 ~~~It~~~v~ 274 (382)
+..|+.+++.
T Consensus 372 ~~~i~~~~l~ 381 (387)
T 1ny5_A 372 GKFIDRGELS 381 (387)
T ss_dssp SSEECHHHHH
T ss_pred CCcCcHHHCc
Confidence 4567766653
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.33 E-value=1.7e-12 Score=107.94 Aligned_cols=134 Identities=14% Similarity=0.225 Sum_probs=81.8
Q ss_pred hhcCCCCCCcccC----cHHHHHHHHHHHHcCC---CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 53 EKYRPKQVKDVAH----QEEVVRVLTNTLETAN---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 53 ~k~~p~~~~~~~g----~~~~~~~l~~~l~~~~---~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
++|++.+|+++++ +.+++..+..++.+-. ...++|+||+|+||||++++++..+.... ...+..++..+
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~--g~~~~~~~~~~-- 77 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK--GIRGYFFDTKD-- 77 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS--CCCCCEEEHHH--
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc--CCeEEEEEHHH--
Confidence 6899999999986 4566677777776543 23499999999999999999999874111 11222233221
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCC--CCCHHHHHHHHHHHHhcC-CceEEEEeecCccc
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYS-KVTRFFFICNYISR 197 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d--~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~ 197 (382)
+...+.......... ..... ..+..++||||++ .+++...+.|..+++... ....+|++||....
T Consensus 78 ----~~~~~~~~~~~~~~~-~~~~~--~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 78 ----LIFRLKHLMDEGKDT-KFLKT--VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp ----HHHHHHHHHHHTCCS-HHHHH--HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred ----HHHHHHHHhcCchHH-HHHHH--hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 111111110000000 00000 0045699999998 567778888888887653 45668888876543
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=7.7e-11 Score=108.61 Aligned_cols=189 Identities=17% Similarity=0.154 Sum_probs=117.9
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-----cchHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-----RGINVVRTK 133 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 133 (382)
..+.++|+++.++.|.. +.. +.++++||+|+|||++++.+++.+. ..++.+++... .........
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN------LPYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT------CCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC------CCEEEEEchhhccccCCCHHHHHHH
Confidence 34678999999999988 765 5799999999999999999998862 12344554321 111111111
Q ss_pred HHHHHHh-------------hh-----cC-CCC-------CCCC--------CCC-CcEEEEEeCCCCCCH----HHHHH
Q 016800 134 IKTFAAV-------------AV-----GS-GQR-------RGGY--------PCP-PYKIIILDEADSMTE----DAQNA 174 (382)
Q Consensus 134 l~~~~~~-------------~~-----~~-~~~-------~~~~--------~~~-~~~vliiDe~d~l~~----~~~~~ 174 (382)
+...... .. .. ... .... ... ++.+|+|||++.+.. +....
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 1111100 00 00 000 0000 000 366999999999753 33445
Q ss_pred HHHHHHhcCCceEEEEeecCccc---------cchhhhccc-ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 016800 175 LRRTMETYSKVTRFFFICNYISR---------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244 (382)
Q Consensus 175 Ll~~le~~~~~~~~Il~~~~~~~---------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 244 (382)
|..+++.. .+..+|+++..... ...++..|. ..+.+.|++.++..+++...+...+...++. ..++.
T Consensus 161 l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~ 237 (357)
T 2fna_A 161 LAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYE 237 (357)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHH
T ss_pred HHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHH
Confidence 55555553 35678888765321 112344454 5899999999999999998877667665543 88899
Q ss_pred hcCCCHHHHHHHHHHH
Q 016800 245 ISQGDLRRAITYLQGA 260 (382)
Q Consensus 245 ~s~gdlr~a~~~l~~~ 260 (382)
.++|++..+......+
T Consensus 238 ~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIY 253 (357)
T ss_dssp HHCSCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999999766555443
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.28 E-value=8.8e-14 Score=141.18 Aligned_cols=153 Identities=21% Similarity=0.223 Sum_probs=105.9
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
...|+++.|.+++++.+...+... ...+++|+||||||||++|++++..+. ..++.+++.+
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~------~~~i~v~~~~ 546 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKGPE 546 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT------CCCCCCCCSS
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC------CCEEEEechH
Confidence 457899999999999888776421 223499999999999999999999983 3344455443
Q ss_pred Cc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------------HHHHHHHHHHHHhc-
Q 016800 124 DR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETY- 182 (382)
Q Consensus 124 ~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------------~~~~~~Ll~~le~~- 182 (382)
.. ....++..+...... .+.+++|||+|.+. ....+.|+..|+..
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~--------------~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQA--------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHH--------------CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred hhhhhcCccHHHHHHHHHHHHhc--------------CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 21 112233333222111 34599999998763 12345666666533
Q ss_pred -CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHH
Q 016800 183 -SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNE 229 (382)
Q Consensus 183 -~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 229 (382)
...+.+|++||.++.+.+++.+ |+. .+.|++|+.++...+++..++.
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 3456778888999999999998 997 8999999999999998776543
No 90
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.23 E-value=4.9e-11 Score=103.62 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=87.1
Q ss_pred HHHHHHHHcC-C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCC
Q 016800 71 RVLTNTLETA-N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (382)
Q Consensus 71 ~~l~~~l~~~-~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 148 (382)
..+..|++.. . ..+++|+||||||||.++.++++.+. ....++..+. .+.....
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~-------l~G~vn~~~~-----------~f~l~~~------ 146 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP-------FYGCVNWTNE-----------NFPFNDC------ 146 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS-------CEEECCTTCS-----------SCTTGGG------
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc-------ccceeecccc-----------ccccccc------
Confidence 4456666654 2 22499999999999999999999741 1111222111 0100000
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH--------hcC-----CceEEEEeecCc-----------cccchhhhc
Q 016800 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTME--------TYS-----KVTRFFFICNYI-----------SRIIEPLAS 204 (382)
Q Consensus 149 ~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le--------~~~-----~~~~~Il~~~~~-----------~~l~~~l~s 204 (382)
...++++.||+ .+..++.+.+..+++ ... ..+.+|++||.. ....+.|+|
T Consensus 147 -----~~k~i~l~Ee~-~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s 220 (267)
T 1u0j_A 147 -----VDKMVIWWEEG-KMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD 220 (267)
T ss_dssp -----SSCSEEEECSC-CEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT
T ss_pred -----cccEEEEeccc-cchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh
Confidence 13456665555 455567778888887 322 566789999861 245688999
Q ss_pred ccceEEec--------CCCHHHHHHHHHHHHHHhCCCCC
Q 016800 205 RCAKFRFK--------PLSEEVMSSRVLHICNEEGLNLD 235 (382)
Q Consensus 205 r~~~i~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 235 (382)
|+..++|. +++.+++..++... +.+..+++
T Consensus 221 R~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 221 RMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE 258 (267)
T ss_dssp TEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred hEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence 99999999 89999999999854 66666544
No 91
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.14 E-value=1.5e-10 Score=110.49 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=83.4
Q ss_pred cCCchhhhhcCCCCCCccc-CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 46 QSSQPWVEKYRPKQVKDVA-HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~-g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
....||.+||+|++|+++- +|.+++..+..++..+.. +++|.|++|||||+++..+++.+...+. ..++.+ +...
T Consensus 9 ~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~-a~T~ 84 (459)
T 3upu_A 9 HHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE--TGIILA-APTH 84 (459)
T ss_dssp ------------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEE-ESSH
T ss_pred CccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEe-cCcH
Confidence 4678999999999999987 688888888888887653 7999999999999999999998854432 122222 2222
Q ss_pred cchHHHHHHH-------HHHHHhhhcCCC------CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 016800 125 RGINVVRTKI-------KTFAAVAVGSGQ------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 125 ~~~~~~~~~l-------~~~~~~~~~~~~------~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
.....+++.+ ..+......... ........+++++||||++.++......|++.+. ....++++
T Consensus 85 ~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~v 161 (459)
T 3upu_A 85 AAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGI 161 (459)
T ss_dssp HHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEE
T ss_pred HHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEE
Confidence 2222232221 111110000000 0001112357899999999999988888887764 45678888
Q ss_pred ecCcc
Q 016800 192 CNYIS 196 (382)
Q Consensus 192 ~~~~~ 196 (382)
++...
T Consensus 162 GD~~Q 166 (459)
T 3upu_A 162 GDNKQ 166 (459)
T ss_dssp ECTTS
T ss_pred CCHHH
Confidence 86543
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.10 E-value=1.6e-10 Score=97.69 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=75.2
Q ss_pred hhhhcCCCCCCcccCcH----HHHHHHHHHHHcCCC----CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 51 WVEKYRPKQVKDVAHQE----EVVRVLTNTLETANC----PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~----~~~~~l~~~l~~~~~----~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+.++|++.+|+++++.. .+++.+..++..... .+++|+||+|+|||++++++++.+...+ ..+..+++.
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~---~~~~~~~~~ 91 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRN---VSSLIVYVP 91 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEEEHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEhH
Confidence 44677888999999743 355666777765521 4699999999999999999999885332 334444443
Q ss_pred CCcchHHHH---------HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--HHHHHH-HHHHhc-CCceEEE
Q 016800 123 DDRGINVVR---------TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALR-RTMETY-SKVTRFF 189 (382)
Q Consensus 123 ~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--~~~~Ll-~~le~~-~~~~~~I 189 (382)
+. ...+. ..+..+. ...+|+|||++..... .+..++ .+++.. .....+|
T Consensus 92 ~~--~~~~~~~~~~~~~~~~~~~~~----------------~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i 153 (202)
T 2w58_A 92 EL--FRELKHSLQDQTMNEKLDYIK----------------KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTF 153 (202)
T ss_dssp HH--HHHHHHC---CCCHHHHHHHH----------------HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEE
T ss_pred HH--HHHHHHHhccchHHHHHHHhc----------------CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 11 01110 0111111 2349999999775433 244344 466543 3455688
Q ss_pred EeecCc
Q 016800 190 FICNYI 195 (382)
Q Consensus 190 l~~~~~ 195 (382)
++||..
T Consensus 154 ~tsn~~ 159 (202)
T 2w58_A 154 FTSNFD 159 (202)
T ss_dssp EEESSC
T ss_pred EEcCCC
Confidence 888754
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.09 E-value=2.3e-10 Score=91.65 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCC
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (382)
+...+..+..+ ....++|+||+|+|||+++++++..+... ...++.++..+.... .+ ..
T Consensus 24 n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---g~~~~~~~~~~~~~~--------~~-----~~- 82 (149)
T 2kjq_A 24 NAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEA---GKNAAYIDAASMPLT--------DA-----AF- 82 (149)
T ss_dssp THHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTT---TCCEEEEETTTSCCC--------GG-----GG-
T ss_pred cHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEcHHHhhHH--------HH-----Hh-
Confidence 34444444433 33359999999999999999999987432 234566666543322 00 00
Q ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC--ceEEEEeecCc-ccc--chhhhcccc
Q 016800 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK--VTRFFFICNYI-SRI--IEPLASRCA 207 (382)
Q Consensus 146 ~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~-~~l--~~~l~sr~~ 207 (382)
+..+++|||++.+....++.|+.+++.... .+++|++++.+ ..+ .+.++||+.
T Consensus 83 ---------~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 83 ---------EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp ---------GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred ---------CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 456999999999987778888888876432 23377777743 222 289999986
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.07 E-value=2.6e-10 Score=94.58 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC
Q 016800 68 EVVRVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (382)
..+..+..+++.-... +++|+||||||||++|.++++.+.+ .++.+...... +.....
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g------~i~~fans~s~-----------f~l~~l---- 101 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNSTSH-----------FWLEPL---- 101 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCSSSC-----------GGGGGG----
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC------CeeeEEeccch-----------hhhccc----
Confidence 3456677777642212 4999999999999999999998732 12211111000 000000
Q ss_pred CCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcC-------------CceEEEEeecCc---cccchhhhcccceE
Q 016800 147 RRGGYPCPPYKIIILDEADSMTEDA-QNALRRTMETYS-------------KVTRFFFICNYI---SRIIEPLASRCAKF 209 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~~~-------------~~~~~Il~~~~~---~~l~~~l~sr~~~i 209 (382)
.+.+++++||++.-.... ...++.+++..+ ....+|+|||.. +...+.|.||+..+
T Consensus 102 -------~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f 174 (212)
T 1tue_A 102 -------TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVF 174 (212)
T ss_dssp -------TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEE
T ss_pred -------CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEE
Confidence 145799999998432222 345666666542 134689999873 44568899999988
Q ss_pred EecC-------------CCHHHHHHHHHHHHHH
Q 016800 210 RFKP-------------LSEEVMSSRVLHICNE 229 (382)
Q Consensus 210 ~~~~-------------~~~~~~~~~l~~~~~~ 229 (382)
.|+. ++.+..+.+.++...+
T Consensus 175 ~F~~~~p~~~~g~p~~~~~~~~wk~ff~~~~~~ 207 (212)
T 1tue_A 175 EFPNAFPFDKNGNPVYEINDKNWKCFFERTWSR 207 (212)
T ss_dssp ECCSCCCBCTTSCBSCCCCHHHHHHHHHHHTGG
T ss_pred EcCCCCCCCCCCCeeEEeCcchHHHHHHHHHHh
Confidence 8873 2345666666554443
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.04 E-value=6.7e-09 Score=96.67 Aligned_cols=170 Identities=16% Similarity=0.107 Sum_probs=104.1
Q ss_pred ccCcHHHHHHHHHHHHcCC-----CCcEEEeCCCCCCHHHHHHHH-HHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 63 VAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAI-AHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~-----~~~lll~Gp~G~GKt~la~~l-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
++||+.++..+.-.+..|. -.|+||.|+||+ ||.+++++ ++.+ .. ......... ....+ ...
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-pR------~~ft~g~~s-s~~gL---t~s 282 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-PR------GVYVDLRRT-ELTDL---TAV 282 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-SS------EEEEEGGGC-CHHHH---SEE
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-CC------eEEecCCCC-CccCc---eEE
Confidence 7899999888887776653 127999999999 99999999 6543 11 111111000 00000 000
Q ss_pred HHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc---------CCceEEEEeecCcc-----------
Q 016800 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---------SKVTRFFFICNYIS----------- 196 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---------~~~~~~Il~~~~~~----------- 196 (382)
.....+.....+.+..+...++++||++.++++.+.+|++.||+. +..+.+|.++|+..
T Consensus 283 -~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~ 361 (506)
T 3f8t_A 283 -LKEDRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARI 361 (506)
T ss_dssp -EEESSSEEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGC
T ss_pred -EEcCCCcccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCcccc
Confidence 000000000001111124569999999999999999999999964 45677888888753
Q ss_pred ccchhhhcccceEEe---------------cCCCHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHh
Q 016800 197 RIIEPLASRCAKFRF---------------KPLSEEVMSSRVLHIC-NEEGLNLDAEALSTLSSI 245 (382)
Q Consensus 197 ~l~~~l~sr~~~i~~---------------~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~ 245 (382)
.+.+++.+|+..+.. +.++.+++++++...- ..-.+.+++++.++|++.
T Consensus 362 ~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 362 DLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred CCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 688899999964321 2345566666665432 122566888887777653
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.01 E-value=3.5e-10 Score=102.01 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=72.6
Q ss_pred hhhcCCCCCCcccCc----HHHHHHHHHHHHcCC---CCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCC
Q 016800 52 VEKYRPKQVKDVAHQ----EEVVRVLTNTLETAN---CPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASD 123 (382)
Q Consensus 52 ~~k~~p~~~~~~~g~----~~~~~~l~~~l~~~~---~~~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~ 123 (382)
...+++.+|+++++. ..+...+..++.... ..+++|+||+|+|||+++.++++.+. ..+ ..+..++.++
T Consensus 115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g---~~v~~~~~~~ 191 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG---VSTTLLHFPS 191 (308)
T ss_dssp CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC---CCEEEEEHHH
T ss_pred CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC---CcEEEEEHHH
Confidence 356678899999863 335556667777532 34699999999999999999999875 332 3344444321
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCC--CCCcEEEEEeCCCCCCH--HHHHHHH-HHHHhc-CCceEEEEeecCc
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSMTE--DAQNALR-RTMETY-SKVTRFFFICNYI 195 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vliiDe~d~l~~--~~~~~Ll-~~le~~-~~~~~~Il~~~~~ 195 (382)
+ +..+... ...+. ..... ..+..+|||||++.... ..++.|+ .+++.. .....+|++||.+
T Consensus 192 ------l---~~~l~~~-~~~~~-~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 192 ------F---AIDVKNA-ISNGS-VKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp ------H---HHHHHCC-CC-----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred ------H---HHHHHHH-hccch-HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 1 1111000 00000 00000 01346999999976543 3344344 466654 2345688888753
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.94 E-value=7.4e-09 Score=115.35 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=100.0
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhc-CCCCCCC
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-SGQRRGG 150 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 150 (382)
.+..++..++ ++||+||||||||++|+.+.... .+..+..++.+.......+...+......... .+...+.
T Consensus 1259 ll~~~l~~~~--~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P 1331 (2695)
T 4akg_A 1259 IFYDLLNSKR--GIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLP 1331 (2695)
T ss_dssp HHHHHHHHTC--EEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEE
T ss_pred HHHHHHHCCC--eEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccC
Confidence 3455555554 69999999999999997776653 13455667766554555555544443211100 0000001
Q ss_pred CCCCCcEEEEEeCCCCCCH------HHHHHHHHHHHhcC------------CceEEEEeecCc-----cccchhhhcccc
Q 016800 151 YPCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRIIEPLASRCA 207 (382)
Q Consensus 151 ~~~~~~~vliiDe~d~l~~------~~~~~Ll~~le~~~------------~~~~~Il~~~~~-----~~l~~~l~sr~~ 207 (382)
...+++-|++|||++.... ...+.|+..+|... .++.+|.++|++ ..+.+++.+|+.
T Consensus 1332 ~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~ 1411 (2695)
T 4akg_A 1332 KSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411 (2695)
T ss_dssp BSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE
T ss_pred CCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee
Confidence 1123567999999776432 46778888887421 235678888887 368999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHH
Q 016800 208 KFRFKPLSEEVMSSRVLHICNE 229 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~ 229 (382)
++.++.|+.+++..++..+...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887754
No 98
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.71 E-value=3.4e-07 Score=90.23 Aligned_cols=188 Identities=11% Similarity=0.068 Sum_probs=104.4
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceEEeecCCCcchHHHHH
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
-|.....++|++..+..+..++... ....+.|+||+|+|||++|..+++.... ...+...+..++.... ....+..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3666678999999999999999743 2233899999999999999998743200 0001112333332221 1111111
Q ss_pred HHHHHHHhhhc-C---CCCCCCC------------CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 133 KIKTFAAVAVG-S---GQRRGGY------------PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 133 ~l~~~~~~~~~-~---~~~~~~~------------~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
.+..+...... . ....... ...++-+||+|+++.. . .++..+..+.+|+||....
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W-------VLKAFDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H-------HHHTTCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H-------HHHHhcCCCeEEEECCCcH
Confidence 12211111000 0 0000000 0013569999999752 1 2334456777888876543
Q ss_pred ccchhhhcccceEEe---cCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 016800 197 RIIEPLASRCAKFRF---KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (382)
Q Consensus 197 ~l~~~l~sr~~~i~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l 257 (382)
.. .... ...+.+ .+++.++..+++...+... ..-.++.+..|++.++|.|-.+....
T Consensus 269 ~~-~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a 328 (591)
T 1z6t_A 269 VT-DSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIG 328 (591)
T ss_dssp GG-TTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHH
T ss_pred HH-HhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHH
Confidence 21 1111 233444 4899999999998766421 11124578899999999987654443
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.70 E-value=1.2e-06 Score=98.03 Aligned_cols=169 Identities=22% Similarity=0.255 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCC
Q 016800 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 147 (382)
+....+..++..+. ..++.||+|||||++++.+|+.+ +..++.+++.+......+...+......
T Consensus 633 r~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l------g~~~v~~nc~e~ld~~~lg~~~~g~~~~------- 697 (2695)
T 4akg_A 633 IGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL------GRVVVVFNCDDSFDYQVLSRLLVGITQI------- 697 (2695)
T ss_dssp HHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT------TCCCEEEETTSSCCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh------CCcEEEEECCCCCChhHhhHHHHHHHhc-------
Confidence 34455555555543 47899999999999999999998 4667889998877766665555444322
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHH-------HHHHhc-------------CCceEEEEeecC----ccccchhhh
Q 016800 148 RGGYPCPPYKIIILDEADSMTEDAQNALR-------RTMETY-------------SKVTRFFFICNY----ISRIIEPLA 203 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d~l~~~~~~~Ll-------~~le~~-------------~~~~~~Il~~~~----~~~l~~~l~ 203 (382)
...+++||+++++++....+- ..+.+. ++.+.+++|.|+ ...+++.++
T Consensus 698 --------Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk 769 (2695)
T 4akg_A 698 --------GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLK 769 (2695)
T ss_dssp --------TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHH
T ss_pred --------CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHH
Confidence 248999999999998776663 333222 234556666673 346899999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------c-----CCCHHHHHHHHHHHHH
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------S-----QGDLRRAITYLQGAAR 262 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s-----~gdlr~a~~~l~~~~~ 262 (382)
+||..+.+..|+.+.+.+++.. ..|....+..+..++.. + +-.+|.+...|..+..
T Consensus 770 ~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~ 838 (2695)
T 4akg_A 770 KSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSP 838 (2695)
T ss_dssp TTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred hheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHH
Confidence 9999999999999998888643 34554444444433321 1 2357887777765543
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.60 E-value=3.1e-07 Score=103.25 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=98.8
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcC--CCCCC
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRG 149 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ 149 (382)
.+..++..++ ++||+||+|||||.++..+.+.+. +..++.++.+.......+...+.......... +...+
T Consensus 1296 ll~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l~-----~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~ 1368 (3245)
T 3vkg_A 1296 VLHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAFP-----DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLR 1368 (3245)
T ss_dssp HHHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGCT-----TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEE
T ss_pred HHHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhCC-----CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccC
Confidence 4455555554 599999999999998876665541 23456777776555555555554322111110 10011
Q ss_pred CCCCCCcEEEEEeCCCCCCH------HHHHHHHHHHHhcC------------CceEEEEeecCc-----cccchhhhccc
Q 016800 150 GYPCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRIIEPLASRC 206 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~------~~~~~Ll~~le~~~------------~~~~~Il~~~~~-----~~l~~~l~sr~ 206 (382)
....+++-|++|||++.-.. ...+.|+.+++... ..+.||.++|++ ..+.+.+.+|+
T Consensus 1369 p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1369 PTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp ESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred CCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence 11123667999999986543 46788888888421 345677777876 34889999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHH
Q 016800 207 AKFRFKPLSEEVMSSRVLHICN 228 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~ 228 (382)
.++.++.|+.+++..+...+..
T Consensus 1449 ~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999776554
No 101
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.50 E-value=1.4e-06 Score=84.96 Aligned_cols=180 Identities=12% Similarity=0.092 Sum_probs=101.1
Q ss_pred cCcHHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHH---HhcCCCCCCCceEEeecCCCc--chH-HHHHHH
Q 016800 64 AHQEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAH---QLFGPELYKSRVLELNASDDR--GIN-VVRTKI 134 (382)
Q Consensus 64 ~g~~~~~~~l~~~l~~~---~~~~lll~Gp~G~GKt~la~~la~---~l~~~~~~~~~~~~~~~~~~~--~~~-~~~~~l 134 (382)
+|++..+..+.+++..+ ....+.|+|+.|+|||++|+.+++ .-....+ ...+.++.+... ... .....+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY--DSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB--SEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC--CcEEEEEECCCCCCCHHHHHHHHH
Confidence 49999999999998655 233389999999999999999997 2222222 123334443321 122 222222
Q ss_pred HHHHHhhh-cCCCCCCC------------CCCCC-cEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 135 KTFAAVAV-GSGQRRGG------------YPCPP-YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 135 ~~~~~~~~-~~~~~~~~------------~~~~~-~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
..+..... ........ .-.++ +-+||+|+++.... . .+ ... ..+++|+||.... +..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--~-~~----~~~-~gs~ilvTTR~~~-v~~ 279 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--I-RW----AQE-LRLRCLVTTRDVE-ISN 279 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--H-HH----HHH-TTCEEEEEESBGG-GGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--h-cc----ccc-CCCEEEEEcCCHH-HHH
Confidence 22221100 00000000 00233 78999999988421 1 11 111 4567777776532 222
Q ss_pred hhhcccceEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCHHHHH
Q 016800 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGL-NLDAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 201 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~s~gdlr~a~ 254 (382)
........+.+++++.++..+++.+.+..... .-..+....|++.++|.|-.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM 334 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence 22112246899999999999998766422111 1113467889999999886543
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.46 E-value=9e-07 Score=72.82 Aligned_cols=68 Identities=15% Similarity=0.269 Sum_probs=48.9
Q ss_pred CcEEEEEeCCC---CCCHHHHHHHHHHHHhcCCceEEEEeec--Cccccchhhhcc--cceEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEAD---SMTEDAQNALRRTMETYSKVTRFFFICN--YISRIIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d---~l~~~~~~~Ll~~le~~~~~~~~Il~~~--~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~ 224 (382)
+++++++||++ .+.+...+.+.+.+++. .+.+|+++. +...+...+.+| +.++.+.+.+.+++...+.
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 56799999953 45678889999999873 333555553 445567788888 6789998888776666553
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.46 E-value=9.5e-06 Score=86.77 Aligned_cols=187 Identities=11% Similarity=0.083 Sum_probs=107.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHh--cCCCCCCCceEEeecCCCcchHHHH
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQL--FGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
-|.....++|+++.++.+.+.+.... ...+.|+|+.|+|||++|..+++.. .... ....++.++...... ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGC-FSGGVHWVSIGKQDK-SGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTT-STTCEEEEECCSCCH-HHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhh-CCCeEEEEEECCcCc-hHHH
Confidence 45666789999999999999986432 2238899999999999998887652 1111 122333444333211 1111
Q ss_pred HHHHHHHHhhhcCCC----CCCC-----------C-CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 132 TKIKTFAAVAVGSGQ----RRGG-----------Y-PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 132 ~~l~~~~~~~~~~~~----~~~~-----------~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
..+..+......... .... . ...++-+||+|+++.. . .++...+.+++|+||...
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--W-------VLKAFDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--H-------HHTTTCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--H-------HHHhhcCCCEEEEEcCCH
Confidence 112111111000000 0000 0 0023679999999853 1 233345667888888754
Q ss_pred cccchhhhcccceEEecC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHH
Q 016800 196 SRIIEPLASRCAKFRFKP-LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (382)
Q Consensus 196 ~~l~~~l~sr~~~i~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~ 255 (382)
.- ..........+.+.+ ++.++..+++...+...... .++....|++.++|.|-.+..
T Consensus 268 ~~-~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~~ 326 (1249)
T 3sfz_A 268 SV-TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVSL 326 (1249)
T ss_dssp TT-TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHHH
T ss_pred HH-HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHHH
Confidence 32 212222334678886 99999999998766332222 235678899999998765443
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.40 E-value=3.7e-07 Score=76.39 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=41.8
Q ss_pred CcEEEEEeCCCCCC--H-HHH--HHHHHHHHh-cCCceEEEEeecCccccchhhhcccc-eEEecCC
Q 016800 155 PYKIIILDEADSMT--E-DAQ--NALRRTMET-YSKVTRFFFICNYISRIIEPLASRCA-KFRFKPL 214 (382)
Q Consensus 155 ~~~vliiDe~d~l~--~-~~~--~~Ll~~le~-~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~ 214 (382)
+..||||||++.+. . +.. ..++..++. ......+|++++++..+...++.|+. .+++.++
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 45799999999982 2 111 134444443 23455789999999999999999987 6777663
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.28 E-value=7.4e-05 Score=84.61 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (382)
++....+..++..+. ...+.||+|||||.+++.+++.+ +..++.+||.+......+...+......
T Consensus 591 drcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l------gr~~~vfnC~~~~d~~~~g~i~~G~~~~------ 656 (3245)
T 3vkg_A 591 DRCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL------GRFVLVFCCDEGFDLQAMSRIFVGLCQC------ 656 (3245)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh------CCeEEEEeCCCCCCHHHHHHHHhhHhhc------
Confidence 444456666666554 25789999999999999999998 4566788998876666555544444432
Q ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH-------hc--------------CCceEEEEeecC----ccccchh
Q 016800 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTME-------TY--------------SKVTRFFFICNY----ISRIIEP 201 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le-------~~--------------~~~~~~Il~~~~----~~~l~~~ 201 (382)
....++||++++..+....+...+. +. .+.+.+++|.|+ ...+++.
T Consensus 657 ---------GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~n 727 (3245)
T 3vkg_A 657 ---------GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDN 727 (3245)
T ss_dssp ---------TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHH
T ss_pred ---------CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHH
Confidence 1378999999999887666555443 11 134556666674 3568999
Q ss_pred hhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---hc----------CCCHHHHHHHHHHHHHh
Q 016800 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS---IS----------QGDLRRAITYLQGAARL 263 (382)
Q Consensus 202 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---~s----------~gdlr~a~~~l~~~~~~ 263 (382)
+++|+..+.+..|+.+.+.+++. -.+|..-....+..++. .+ +-.+|.....|..+...
T Consensus 728 Lk~lFr~v~m~~Pd~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 728 LKKLFRSMAMIKPDREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp HHTTEEEEECCSCCHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEeCCCHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999998873 35676433333333332 11 23488888888765543
No 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.23 E-value=3.2e-05 Score=79.00 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=82.7
Q ss_pred ccCcHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh
Q 016800 63 VAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (382)
.+|++..+..|.+++... ..+.+.|+|+.|+|||++|..+++...-...+...++.++.+.......+...+.......
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 389999999999998763 3334899999999999999999853100000112233333333222222222222111100
Q ss_pred hcC-CCCCC-----------------C---CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 142 VGS-GQRRG-----------------G---YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 142 ~~~-~~~~~-----------------~---~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
... ..... . ...+++-+||+|+++. .+..+. + +..+++|+||...... .
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~----f---~pGSRILVTTRd~~Va-~ 279 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNA----F---NLSCKILLTTRFKQVT-D 279 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHH----H---HSSCCEEEECSCSHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHh----h---CCCeEEEEeccChHHH-H
Confidence 000 00000 0 0012567999999988 222222 2 3566788887654322 1
Q ss_pred hhhc-ccceEEec----CCCHHHHHHHHHHHH
Q 016800 201 PLAS-RCAKFRFK----PLSEEVMSSRVLHIC 227 (382)
Q Consensus 201 ~l~s-r~~~i~~~----~~~~~~~~~~l~~~~ 227 (382)
.+.. +...+.++ +++.++..+++...+
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHc
Confidence 1111 12234444 799999999987763
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.18 E-value=1.4e-06 Score=72.02 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=37.2
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec------Cccccchhhhcccc-eEEec
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------YISRIIEPLASRCA-KFRFK 212 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------~~~~l~~~l~sr~~-~i~~~ 212 (382)
++.+|+|||++.++++..+.|..+.+. ...+|+++. ++....+.+.+++. +..+.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999999987777777777765 344666553 33345566777765 33443
No 108
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.99 E-value=1.4e-05 Score=78.02 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH-------HHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-------KTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~ 138 (382)
.+.....+...+. .+.++++||||||||+++..++..+...+ ..+... ++.......+.+.+ ..+.
T Consensus 191 ~~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~-ApT~~Aa~~L~e~~~~~a~Tih~ll 263 (574)
T 3e1s_A 191 SEEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLC-APTGKAARRLGEVTGRTASTVHRLL 263 (574)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEE-ESSHHHHHHHHHHHTSCEEEHHHHT
T ss_pred CHHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEe-cCcHHHHHHhHhhhcccHHHHHHHH
Confidence 4555555555443 23589999999999999999998774332 233322 33222222222211 1111
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
.... ...........+..+|||||+..++......|++.+ +....+|++++...
T Consensus 264 ~~~~-~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 264 GYGP-QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp TEET-TEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred cCCc-chhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 1111 000000001125679999999999988777666554 45678899887543
No 109
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=97.96 E-value=4.4e-05 Score=62.49 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=73.4
Q ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-
Q 016800 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE- 356 (382)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~- 356 (382)
+..+++.++.|+++++.+|.+.|+-|+.+|+..|++|..|.++|.....+ +++++....+....+..+.....|.++
T Consensus 32 Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE--DIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 32 GQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACE--DIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--TTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--hccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 34568899999999999999999999999999999999999999876665 888887777777777788888889744
Q ss_pred HHHHHHHHHHHH
Q 016800 357 YLQLLDVASNVI 368 (382)
Q Consensus 357 ~l~l~~l~~~l~ 368 (382)
++.|...++-|+
T Consensus 110 ~i~LaqaviyLA 121 (213)
T 3ctd_A 110 LFFLSQASLYLA 121 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666655555
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.91 E-value=4.4e-05 Score=64.79 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=52.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-c---------c-------hHHHHHHHHHHHHhhhcCCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-R---------G-------INVVRTKIKTFAAVAVGSGQR 147 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~-~---------~-------~~~~~~~l~~~~~~~~~~~~~ 147 (382)
++++||+|+||||++..++..+...+ ..+..+.+... + + .....+.... .....
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~-i~~~~----- 85 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNY-IMSNS----- 85 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHH-HHSTT-----
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHH-HHHHh-----
Confidence 79999999999999998887764322 12222221110 0 0 0001111111 11111
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..+++.+|+|||++.++.+....+..+.+ . ...+|+++.
T Consensus 86 ----~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~--gi~Vil~Gl 124 (223)
T 2b8t_A 86 ----FNDETKVIGIDEVQFFDDRICEVANILAE-N--GFVVIISGL 124 (223)
T ss_dssp ----SCTTCCEEEECSGGGSCTHHHHHHHHHHH-T--TCEEEEECC
T ss_pred ----hCCCCCEEEEecCccCcHHHHHHHHHHHh-C--CCeEEEEec
Confidence 11256899999999998776665555443 2 456777774
No 111
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.89 E-value=4.3e-05 Score=68.02 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|+||||+|||+++..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 799999999999999999986
No 112
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.84 E-value=7.3e-05 Score=61.66 Aligned_cols=108 Identities=14% Similarity=0.163 Sum_probs=64.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEe-ecCCCcch-----------------------------HHHHH
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL-NASDDRGI-----------------------------NVVRT 132 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~-~~~~~~~~-----------------------------~~~~~ 132 (382)
..+++++++|.||||+|..++-...+.+.. ..++.+ ......+. .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~r-V~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKN-VGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCC-EEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 458999999999999999999887655421 112211 11000000 01111
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC------CCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA------DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~------d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
.+..... .. ..+.+.+||+||+ +.++. +.++.++...++...+|+|++.+. +.|...+
T Consensus 108 ~l~~a~~-~l---------~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap---~~l~e~A 171 (196)
T 1g5t_A 108 VWQHGKR-ML---------ADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH---RDILDLA 171 (196)
T ss_dssp HHHHHHH-HT---------TCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC---HHHHHHC
T ss_pred HHHHHHH-HH---------hcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCc---HHHHHhC
Confidence 1111111 11 1237899999998 44543 358888899999999999998753 3444444
Q ss_pred c
Q 016800 207 A 207 (382)
Q Consensus 207 ~ 207 (382)
+
T Consensus 172 D 172 (196)
T 1g5t_A 172 D 172 (196)
T ss_dssp S
T ss_pred c
Confidence 4
No 113
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.84 E-value=3.6e-05 Score=75.71 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=59.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCceEEeecCCCcchHHHHHHHHHHHHhhh-------------cCCCCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDDRGINVVRTKIKTFAAVAV-------------GSGQRRG 149 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~ 149 (382)
.++++|+||||||+++..+...+.... .....+. +-++.......+.+.+........ ......-
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vl-l~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll 244 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEE-EEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEE-EEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhhh
Confidence 599999999999999998887764210 0112233 333333333333333332211100 0000000
Q ss_pred ------------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 150 ------------GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 150 ------------~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
.......+++||||++.++......|++. .+....+|++++..
T Consensus 245 ~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~---l~~~~~liLvGD~~ 299 (608)
T 1w36_D 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA---LPDHARVIFLGDRD 299 (608)
T ss_dssp -----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHT---CCTTCEEEEEECTT
T ss_pred ccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHh---CCCCCEEEEEcchh
Confidence 00011457999999998886665555544 45677899998754
No 114
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.69 E-value=0.00046 Score=56.27 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
++|.|+||+||||+++.+++
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 89999999999999999998
No 115
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.68 E-value=0.00034 Score=58.98 Aligned_cols=132 Identities=12% Similarity=0.144 Sum_probs=70.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhh----cCCC--CCCCC---CCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----GSGQ--RRGGY---PCPP 155 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~--~~~~~---~~~~ 155 (382)
+++.|++|+||||++..++..+...+ ..+..++.........+. .+..+..... ..+. ..... ...+
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G---~~V~v~d~D~q~~~~~~a-l~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~ 84 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQG---VRVMAGVVETHGRAETEA-LLNGLPQQPLLRTEYRGMTLEEMDLDALLKAA 84 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCTTCHHHHH-HHTTSCBCCCEEEEETTEEEEECCHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CCEEEEEeCCCCChhHHH-HhcCccccCcceeecCCcccccccHHHHHhcC
Confidence 89999999999999999998875432 233333332211111111 1111000000 0000 00000 0015
Q ss_pred cEEEEEeCCCCCCHH------HHHHHHHHHHhcCCceEEEEeecC------------------ccccchhhhcccceEEe
Q 016800 156 YKIIILDEADSMTED------AQNALRRTMETYSKVTRFFFICNY------------------ISRIIEPLASRCAKFRF 211 (382)
Q Consensus 156 ~~vliiDe~d~l~~~------~~~~Ll~~le~~~~~~~~Il~~~~------------------~~~l~~~l~sr~~~i~~ 211 (382)
+.++||||+...+.. ..+.+...+ +....++.++|- .+.+++.+..++..+.+
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l---~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~l 161 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELL---AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVL 161 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHH---HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEE
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHH---cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEE
Confidence 679999998876321 122222232 334456666651 13466777788888888
Q ss_pred cCCCHHHHHHHH
Q 016800 212 KPLSEEVMSSRV 223 (382)
Q Consensus 212 ~~~~~~~~~~~l 223 (382)
-.++++++.+.+
T Consensus 162 vD~~p~~l~~rl 173 (228)
T 2r8r_A 162 IDLPPRELLERL 173 (228)
T ss_dssp BCCCHHHHHHHH
T ss_pred ecCCHHHHHHHH
Confidence 889999988776
No 116
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=97.65 E-value=0.00037 Score=56.60 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=73.1
Q ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-
Q 016800 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE- 356 (382)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~- 356 (382)
+..+++.++.|+++++.+|.+.|+-|+.+|+..| +|..|.++|.....+ +++++....+....+..+.....|.++
T Consensus 11 Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsE--DIGlAdP~Al~~a~aa~~a~~~iG~PE~ 87 (204)
T 2r9g_A 11 GDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYE--DIGLGNPAAAARTVNAVLAAEKLGLPEA 87 (204)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH--TTGGGCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh--hccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 3557889999999999999999999999999999 999999999876665 888888777788888888888899744
Q ss_pred HHHHHHHHHHHH
Q 016800 357 YLQLLDVASNVI 368 (382)
Q Consensus 357 ~l~l~~l~~~l~ 368 (382)
++.|...++-|+
T Consensus 88 ~i~LaqaviyLA 99 (204)
T 2r9g_A 88 RIPLADVVVDLC 99 (204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 676655555544
No 117
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.65 E-value=0.00023 Score=61.19 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=62.2
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhc-
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 143 (382)
-.+...+.+..++..+ +++++||+|+|||.++..++... ...++.+.+.. .-..++...+..+......
T Consensus 94 l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~-~L~~q~~~~~~~~~~~~v~~ 163 (237)
T 2fz4_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTL-ALAEQWKERLGIFGEEYVGE 163 (237)
T ss_dssp CCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSH-HHHHHHHHHHGGGCGGGEEE
T ss_pred cCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCH-HHHHHHHHHHHhCCCCeEEE
Confidence 3556666666555442 49999999999999999888775 22334343321 1223333333331100000
Q ss_pred -CCCCCC--C--------------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 144 -SGQRRG--G--------------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 144 -~~~~~~--~--------------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.+.... . .......+|||||+|.+....... +++..+...++.++++.
T Consensus 164 ~~g~~~~~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~---i~~~~~~~~~l~LSATp 228 (237)
T 2fz4_A 164 FSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQ---IAQMSIAPFRLGLTATF 228 (237)
T ss_dssp ESSSCBCCCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHHH---HHHTCCCSEEEEEEESC
T ss_pred EeCCCCCcCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHHH---HHHhccCCEEEEEecCC
Confidence 000000 0 000146799999999997654433 44444445556666554
No 118
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=97.63 E-value=0.00014 Score=58.88 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-HH
Q 016800 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE-YL 358 (382)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~l 358 (382)
.+++.++.|+++++.+|.+.|+-|+.+|+..|++|..|.++|.....+ ++++.....+....+..+.....|.++ ++
T Consensus 6 ~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE--DIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 83 (201)
T 3bge_A 6 RFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASE--DVGNADPRAMQVALAAWDCFTRVGAYEGER 83 (201)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--TTGGGCTTHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--hccCCCHHHHHHHHHHHHHHHHHCCcHHHH
Confidence 357889999999999999999999999999999999999999876665 888877777777777777777888744 56
Q ss_pred HHHHHHHHHH
Q 016800 359 QLLDVASNVI 368 (382)
Q Consensus 359 ~l~~l~~~l~ 368 (382)
.|...++-|+
T Consensus 84 ~LaqaviyLA 93 (201)
T 3bge_A 84 AIAQAIIYLS 93 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 119
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.62 E-value=0.00019 Score=78.37 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
.+++|+||||||||++|.+++.+...
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~ 1453 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQR 1453 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35999999999999999999988743
No 120
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.60 E-value=0.00015 Score=56.85 Aligned_cols=122 Identities=9% Similarity=0.047 Sum_probs=76.3
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 016800 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154 (382)
Q Consensus 75 ~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (382)
+.++.+-.|.+||+|+.-.-....+..+.+.+...+.....+..+++ . ..+...+......+..+
T Consensus 11 ~~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~--~---~~~~~l~~~~~s~slF~---------- 75 (140)
T 1jql_B 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--N---TDWNAIFSLCQAMSLFA---------- 75 (140)
T ss_dssp HHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCST--T---CCHHHHHHHHHCCCTTC----------
T ss_pred HHHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcceeEEEecC--C---CCHHHHHHHHhcCCCCC----------
Confidence 34444444559999999888888888887766433322222333333 1 22334343333333332
Q ss_pred CcEEEEEeCCCC-CCHHHHHHHHHHHHhcCCceEEEEeecCc------cccchhhhcccceEEe
Q 016800 155 PYKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNYI------SRIIEPLASRCAKFRF 211 (382)
Q Consensus 155 ~~~vliiDe~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~------~~l~~~l~sr~~~i~~ 211 (382)
++++|+|.+++. ...+..+.|..+++.+++.+.+|++.... .++.+++.+.+..+.+
T Consensus 76 ~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp CCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred CCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 789999998765 56677788999999999988888887432 2355666665555543
No 121
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.59 E-value=0.0029 Score=60.87 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=52.3
Q ss_pred CcEEEEEeCCCCCC----HHHHHHHHHHHHhc-CCceEEEEeecCcc--ccchhhhcccc-eEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEADSMT----EDAQNALRRTMETY-SKVTRFFFICNYIS--RIIEPLASRCA-KFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d~l~----~~~~~~Ll~~le~~-~~~~~~Il~~~~~~--~l~~~l~sr~~-~i~~~~~~~~~~~~~l~ 224 (382)
++-+|||||++.+. .+....|.++.... ...+.+|+++..+. .+...+++.+. .+.|..-+..+...+|.
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 45799999999773 44556666666654 44667788887776 67788888887 78898888888888773
No 122
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.53 E-value=0.001 Score=58.00 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+..++|.|+||+||||+++.+++.+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3348999999999999999999975
No 123
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.49 E-value=0.00053 Score=55.49 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 654
No 124
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.43 E-value=0.0052 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999886
No 125
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.36 E-value=0.00066 Score=54.83 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 126
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.34 E-value=0.003 Score=53.31 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 154 PPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 154 ~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
...+++|+||+|.+. ......+..++...+....+++.|..+
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 200 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 200 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCC
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeec
Confidence 356899999999883 344455666666555555555555433
No 127
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.33 E-value=0.0007 Score=55.90 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=42.4
Q ss_pred CcEEEEEeCCCCC---CHHHHHHHHHHHHhcCCceEEE--Ee-ecCc-cccchhhhcc--cceEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFF--FI-CNYI-SRIIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~I--l~-~~~~-~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~ 224 (382)
++.++|+||++.+ +....+.|.++++.+.. .++ ++ +... ..+.+.+..+ +.++.+.+-+.+.+..-+.
T Consensus 105 ~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~--~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~ 181 (189)
T 2i3b_A 105 GQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGT--IILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181 (189)
T ss_dssp CCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSC--CEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHH
T ss_pred CCCEEEEeCCCccccccHHHHHHHHHHHhCCCc--EEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHH
Confidence 6789999998776 45577888888876432 232 22 1222 2455666664 4578887777666655553
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.33 E-value=0.00073 Score=55.58 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=50.0
Q ss_pred EEEeCCCCCCHH-HHHHHHHHHhcCCCCCCCceEEeecC-CCcchHHHHHHHHHHHHhh-hcCCC-CCCCCCCCCcEEEE
Q 016800 85 MLFYGPPGTGKT-TTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAVA-VGSGQ-RRGGYPCPPYKIII 160 (382)
Q Consensus 85 lll~Gp~G~GKt-~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~~~~vli 160 (382)
+++|||.|+||| ++++++.+.... ...++.+.+. |.+....+...+....... ..... .... ..+..+|+
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~--~~~~DvIl 96 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQE--ALGVAVIG 96 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHH--HHTCSEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHh--ccCCCEEE
Confidence 799999999999 888888877632 2445555443 2111111111111100000 00000 0000 01456999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 161 iDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
|||++.+ ++ +..++..+-+. ...+|+++
T Consensus 97 IDEaQFf-k~-~ve~~~~L~~~--gk~VI~~G 124 (195)
T 1w4r_A 97 IDEGQFF-PD-IVEFCEAMANA--GKTVIVAA 124 (195)
T ss_dssp ESSGGGC-TT-HHHHHHHHHHT--TCEEEEEE
T ss_pred EEchhhh-HH-HHHHHHHHHHC--CCeEEEEe
Confidence 9999999 55 54555555443 23456654
No 129
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.29 E-value=0.00039 Score=57.47 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++||.|+||||.+..+++.+.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 79999999999999988888764
No 130
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.28 E-value=0.0093 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.726 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||||+||||+++.+++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 131
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.27 E-value=0.0056 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||||+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 132
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.26 E-value=0.0011 Score=61.91 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|+||+||||+++.+++.+
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999998876
No 133
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.25 E-value=0.00035 Score=58.46 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=51.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC-Cc-chHHHHHHHHHHHHhhhcCCC---CCCCCCCCCcEEE
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DR-GINVVRTKIKTFAAVAVGSGQ---RRGGYPCPPYKII 159 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~vl 159 (382)
.+++||.|+||||.+...+......+ ..++.+.+.- .+ +...+...+.. ......... ..... .+++.+|
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g---~kVli~k~~~d~R~ge~~i~s~~g~-~~~a~~~~~~~~~~~~~-~~~~dvV 105 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAK---QHAIVFKPCIDNRYSEEDVVSHNGL-KVKAVPVSASKDIFKHI-TEEMDVI 105 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEECC------------------CCEEECSSGGGGGGGC-CSSCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEeccCCcchHHHHHhhcCC-eeEEeecCCHHHHHHHH-hcCCCEE
Confidence 68999999999999988887764332 3444444331 11 11112111110 000000000 00001 1247899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 160 iiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
+|||++.++++..+.+..+.+ ....+|+++-
T Consensus 106 iIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl 136 (214)
T 2j9r_A 106 AIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGL 136 (214)
T ss_dssp EECCGGGSCTTHHHHHHHHHH---TTCEEEEEEC
T ss_pred EEECcccCCHHHHHHHHHHhh---CCCEEEEEec
Confidence 999999998776655444433 2456777763
No 134
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.21 E-value=0.0026 Score=51.91 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=17.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999887
No 135
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.20 E-value=0.004 Score=53.20 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=16.7
Q ss_pred cEEEeCCCCCCHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIA 103 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la 103 (382)
.+++.||+|+|||++...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 59999999999998765554
No 136
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.20 E-value=0.0019 Score=54.29 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=57.5
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC--CC---------CceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCC
Q 016800 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL--YK---------SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (382)
Q Consensus 80 ~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 148 (382)
.+.++++|.|++|+|||+++..+......... .. ..+.-++.+.. +..+.....+........
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---~~~~~~~~~~~~~~~~~~--- 83 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGH---VKLRYKLSDYLKTRAKFV--- 83 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCC---GGGTHHHHHHHHHHGGGE---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCc---HHHHHHHHHHHHhccccC---
Confidence 34556999999999999999999987543211 00 11222333322 222233333332211100
Q ss_pred CCCCCCCcEEEEEeCC-CCC-CHHHHHHHHHHHHh----cCCceEEEEeecCcccc
Q 016800 149 GGYPCPPYKIIILDEA-DSM-TEDAQNALRRTMET----YSKVTRFFFICNYISRI 198 (382)
Q Consensus 149 ~~~~~~~~~vliiDe~-d~l-~~~~~~~Ll~~le~----~~~~~~~Il~~~~~~~l 198 (382)
..-++++|-. +.- .......+..++.. .+....+++++|..+..
T Consensus 84 ------~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 84 ------KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp ------EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred ------CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 2347777766 222 23445556666654 33456688888877653
No 137
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.19 E-value=0.0067 Score=53.85 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999863
No 138
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.14 E-value=0.0083 Score=56.03 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+++.|++|+||||++..++..+...
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999887543
No 139
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.12 E-value=0.0055 Score=58.36 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=47.3
Q ss_pred CcEEEEEeCCCCCCH----HHHHHHHHHHHhcC-CceEEEEeecCcc--ccchhhhcccc-eEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEADSMTE----DAQNALRRTMETYS-KVTRFFFICNYIS--RIIEPLASRCA-KFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d~l~~----~~~~~Ll~~le~~~-~~~~~Il~~~~~~--~l~~~l~sr~~-~i~~~~~~~~~~~~~l~ 224 (382)
++-+++|||+..+.. +..+.|..+..... ....+|+++..+. .+...+++.+. .+.|.--+..+.+.++.
T Consensus 297 P~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp CEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 345899999976543 22334444444433 3566778887765 46777888776 78998888889888773
No 140
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.11 E-value=0.0086 Score=50.24 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=25.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
++|+||+|+|||+++..++. . ....++.++...
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~ 55 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEG 55 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCC
Confidence 89999999999999999988 2 123555566544
No 141
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.07 E-value=0.0044 Score=56.45 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=30.9
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+++++... .. +.++..... ..+++.||+|+||||++++++..+.
T Consensus 103 ~~~l~~lg~~-~~---l~~l~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 103 VLTMEELGMG-EV---FKRVSDVPR-GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CCCTTTTTCC-HH---HHHHHHCSS-EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHcCCh-HH---HHHHHhCCC-CEEEEECCCCCCHHHHHHHHHhccc
Confidence 3456666433 33 333333322 2599999999999999999988764
No 142
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.07 E-value=0.0025 Score=54.10 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999765
No 143
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.03 E-value=0.003 Score=52.55 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=23.7
Q ss_pred CcEEEEEeCCCCCCH-HHHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..+++|+||+|.+.. .....+..++...+....+++.|.
T Consensus 146 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SA 185 (206)
T 1vec_A 146 HVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred cCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 567999999997643 334455555555554444555443
No 144
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.03 E-value=0.0021 Score=58.59 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=25.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
++|+|+||+|||+++..++..+...+ ..++.++.
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~ 99 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDA 99 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeC
Confidence 89999999999999999998764221 24455554
No 145
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.02 E-value=0.0033 Score=57.11 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCC-c--EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 72 VLTNTLETANCP-H--MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 72 ~l~~~l~~~~~~-~--lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.|-..+..|..+ . ++|+||||+||||++..++..+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444445423332 2 89999999999999999998763
No 146
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.01 E-value=0.0045 Score=56.21 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=28.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC---CCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPEL---YKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~---~~~~~~~~~~~~ 123 (382)
++|+||||+|||+++..++.....+.. ....+++++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 799999999999999999987532210 234566666654
No 147
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.99 E-value=0.0015 Score=60.03 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|+||+|+||||+++.++...
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999999876
No 148
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.98 E-value=0.00055 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++|.|++|+||||+++.+++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
No 149
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.98 E-value=0.0085 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999987
No 150
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.97 E-value=0.0027 Score=69.47 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=22.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+++++||||+|||+++.+++.+....
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~k~ 1108 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQRE 1108 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 49999999999999999999887533
No 151
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.96 E-value=0.0073 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||||+||+|.+..+++.+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999987
No 152
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.95 E-value=0.0014 Score=64.26 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC------CCCceEEeecCCCcchHHHH-HHHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL------YKSRVLELNASDDRGINVVR-TKIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~------~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 138 (382)
|...+..+...+..+. .++++.+|+|+|||.++..++..+....+ ....++.+-+... -..++. +.+..+.
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~-L~~Q~~~~~~~~~~ 260 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNV-LVDDPKDKTFTPFG 260 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC------------CCTTTC
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHH-HHHHHHHHHHHhcc
Confidence 3444444444444443 35899999999999998888877643321 1233444433221 112222 1111111
Q ss_pred Hhh-------h-cCCC-------C----------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 139 AVA-------V-GSGQ-------R----------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 139 ~~~-------~-~~~~-------~----------~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
... . .... . ...+......+|||||+|++.......+..+++..+....+.++++
T Consensus 261 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTAT 340 (590)
T 3h1t_A 261 DARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTAT 340 (590)
T ss_dssp SSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESS
T ss_pred hhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccc
Confidence 000 0 0000 0 0111223567999999999975444555566666555556666666
Q ss_pred Cc
Q 016800 194 YI 195 (382)
Q Consensus 194 ~~ 195 (382)
+.
T Consensus 341 P~ 342 (590)
T 3h1t_A 341 PL 342 (590)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 153
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.00077 Score=54.84 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|+|++|+||||+++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999987
No 154
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.94 E-value=0.0075 Score=53.61 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=31.3
Q ss_pred CCCCcccCcHHHHHHHHH---------------HHHcCCCCcEEEeCCCCCCHHHHHH-HHHHHh
Q 016800 58 KQVKDVAHQEEVVRVLTN---------------TLETANCPHMLFYGPPGTGKTTTAL-AIAHQL 106 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~---------------~l~~~~~~~lll~Gp~G~GKt~la~-~la~~l 106 (382)
.+|+++--.+.+++.+.. .+..+...++++.+|+|+|||.... .+...+
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 567777666776655532 1223323469999999999997643 444444
No 155
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.94 E-value=0.00063 Score=61.45 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++..+...+..+..++++|.|++|+||||+++.+++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 334444445567767799999999999999999999873
No 156
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.93 E-value=0.0036 Score=52.90 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
+..++|+||+|.+... ....+..++...+....+++.|..
T Consensus 155 ~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT 195 (224)
T 1qde_A 155 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 195 (224)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred hCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEee
Confidence 5679999999987432 234455555555555555555433
No 157
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.92 E-value=0.0052 Score=55.88 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+||||+|||+++..++..+.
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999987764
No 158
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.91 E-value=0.007 Score=55.34 Aligned_cols=23 Identities=52% Similarity=0.622 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+||||+|||+++..++..+.
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHH
Confidence 89999999999999999988763
No 159
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.84 E-value=0.006 Score=56.92 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.||+|+||||++..++..+.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998874
No 160
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.82 E-value=0.0055 Score=56.41 Aligned_cols=113 Identities=20% Similarity=0.174 Sum_probs=55.9
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhc-------CCC------
Q 016800 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-------SGQ------ 146 (382)
Q Consensus 80 ~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~------ 146 (382)
+...++++.+|+|+|||..+...+-...........++.+-+.. .-..++.+.+..+...... ...
T Consensus 42 ~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (395)
T 3pey_A 42 NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSR-ELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI 120 (395)
T ss_dssp SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSH-HHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCB
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCH-HHHHHHHHHHHHHhcccCeeEEEEecCchhhhccC
Confidence 33346999999999999876654443322221222344333322 1233333444433211000 000
Q ss_pred ----------------CCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCceEEEEeec
Q 016800 147 ----------------RRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 147 ----------------~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
........+..+||+||+|.+.. .....+..++...+....+++.|.
T Consensus 121 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 185 (395)
T 3pey_A 121 NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSA 185 (395)
T ss_dssp CCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEe
Confidence 00011123567999999998754 233445555555555555555553
No 161
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.81 E-value=0.0028 Score=53.52 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=50.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-CCcchHHHHHHHHHHHHhhhcCCCCCCCC-CCCCcEEEEEe
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGY-PCPPYKIIILD 162 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~vliiD 162 (382)
.+++||.|+||||.+...+......+ .+++.+.+. +.+.-..+...+.. .............. ..+++.+|+||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g---~kvli~kp~~D~Ryg~~i~sr~G~-~~~a~~i~~~~di~~~~~~~dvViID 97 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYAKDTRYSSSFCTHDRN-TMEALPACLLRDVAQEALGVAVIGID 97 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTT---CCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEEES
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEeecCCccchHHHHhhcCC-eeEEEecCCHHHHHHHhccCCEEEEE
Confidence 79999999999988777766654332 233333322 11111222111100 00000000000000 00256799999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 163 EADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 163 e~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
|++.+.. ...+.+.+.+ ....+|+++-
T Consensus 98 EaQF~~~--v~el~~~l~~--~gi~VI~~GL 124 (234)
T 2orv_A 98 EGQFFPD--IVEFCEAMAN--AGKTVIVAAL 124 (234)
T ss_dssp SGGGCTT--HHHHHHHHHH--TTCEEEEECC
T ss_pred chhhhhh--HHHHHHHHHh--CCCEEEEEec
Confidence 9999974 6667777776 3456777763
No 162
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.79 E-value=0.002 Score=53.95 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=27.3
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
-.+...+.+..++.. .++++.+|+|+|||.++...+...
T Consensus 34 l~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 34 LRPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 344555555544432 369999999999999988777654
No 163
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.79 E-value=0.0067 Score=50.67 Aligned_cols=22 Identities=45% Similarity=0.862 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||||+||+|.+..+++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 164
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.79 E-value=0.0009 Score=55.71 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+..++|.||+|+||||+++.+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999999987
No 165
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.78 E-value=0.011 Score=49.10 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
..+++|+||+|.+... ....+..++...+....+++.|..
T Consensus 144 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 184 (207)
T 2gxq_A 144 RVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSAT 184 (207)
T ss_dssp TCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSS
T ss_pred hceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEe
Confidence 5679999999987432 234455555554545555555543
No 166
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.76 E-value=0.00099 Score=54.37 Aligned_cols=24 Identities=42% Similarity=0.731 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.++|+|++|+||||+++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999987
No 167
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.76 E-value=0.0011 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++|.|++|+||||+++.+++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
No 168
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.75 E-value=0.0023 Score=59.60 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=54.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC----------CCCCCCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ----------RRGGYPCP 154 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------~~~~~~~~ 154 (382)
.++.|+||+|||+++..++.. .....+.+. ....+.+++.+.... ....... ........
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~--------~~~lVlTpT-~~aa~~l~~kl~~~~-~~~~~~~~V~T~dsfL~~~~~~~~~ 233 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF--------EEDLILVPG-RQAAEMIRRRANASG-IIVATKDNVRTVDSFLMNYGKGARC 233 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT--------TTCEEEESC-HHHHHHHHHHHTTTS-CCCCCTTTEEEHHHHHHTTTSSCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc--------CCeEEEeCC-HHHHHHHHHHhhhcC-ccccccceEEEeHHhhcCCCCCCCC
Confidence 799999999999999776531 112223332 223444444442110 0000000 00000001
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
...++||||+..++......++..+ +. ..+|++++..
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~---~~-~~vilvGD~~ 270 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMS---LC-DIAYVYGDTQ 270 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHT---TC-SEEEEEECTT
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhC---CC-CEEEEecCcc
Confidence 2679999999999988777776653 22 6788888653
No 169
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.73 E-value=0.0055 Score=55.10 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||||+|||+++..++...
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999864
No 170
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.71 E-value=0.013 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998653
No 171
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.70 E-value=0.0011 Score=53.89 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|++|+||||+++.+++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999987
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.66 E-value=0.014 Score=49.80 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++++||||+|||+++..++....
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999988877653
No 173
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.63 E-value=0.074 Score=41.81 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 174
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.62 E-value=0.0015 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 175
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.60 E-value=0.011 Score=52.07 Aligned_cols=120 Identities=9% Similarity=0.136 Sum_probs=65.0
Q ss_pred cCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh--
Q 016800 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-- 141 (382)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 141 (382)
.-.+...+.+..++..+ +.++.+|+|+|||.++..++....... ...++.+-+. ..-..++.+.+..+....
T Consensus 113 ~l~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt-~~L~~q~~~~l~~~~~~~~~ 186 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPT-TALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSS-HHHHHHHHHHHHHHTSCCGG
T ss_pred CccHHHHHHHHHHHhcC---CeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECC-HHHHHHHHHHHHHhcccccc
Confidence 34555666666666652 468899999999999987776543211 1234444332 223455656565553210
Q ss_pred ----hcCCCCC-----CCC----------------CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 142 ----VGSGQRR-----GGY----------------PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 142 ----~~~~~~~-----~~~----------------~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
...+... ... ......+||+||+|.+... .+..++........+++.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~---~~~~il~~~~~~~~~l~lS 259 (282)
T 1rif_A 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGK---SISSIISGLNNCMFKFGLS 259 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHH---HHHHHTTTCTTCCEEEEEC
T ss_pred eEEEEeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcc---cHHHHHHHhhcCCeEEEEe
Confidence 0000000 000 1235689999999999865 4445555443334444444
No 176
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.60 E-value=0.0013 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 177
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.59 E-value=0.019 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=18.3
Q ss_pred CCcEEEeCCCCCCHHHHHHH-HHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALA-IAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~-la~~l 106 (382)
..++++.+|+|+|||..+.. +...+
T Consensus 64 ~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCchHHHHHHHHHHHHh
Confidence 34699999999999987643 33333
No 178
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.58 E-value=0.0034 Score=62.25 Aligned_cols=42 Identities=31% Similarity=0.387 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
-++...+++...+... +..||+||||||||+++..+...+..
T Consensus 190 LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp CCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3677778888777643 24799999999999988877777653
No 179
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.58 E-value=0.0013 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||+++.+++.+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 180
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.58 E-value=0.012 Score=56.09 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
..++|||||+|.+.. .....+..++...+....+|+.+..+
T Consensus 235 ~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 277 (479)
T 3fmp_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (479)
T ss_dssp GCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCC
T ss_pred cCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCC
Confidence 567999999997632 33444455555555556666665443
No 181
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.57 E-value=0.0054 Score=52.45 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=24.0
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
..++||+||+|.+... ....+..++...+....+++.|..
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 5679999999977432 233455555555555555555543
No 182
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.57 E-value=0.0016 Score=54.24 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=22.7
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
....+.|.||+|+||||+++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 33358999999999999999999886
No 183
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.54 E-value=0.002 Score=55.87 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.+++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999999987
No 184
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.53 E-value=0.0016 Score=53.40 Aligned_cols=25 Identities=48% Similarity=0.654 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
...++|+|++|+||||+++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3459999999999999999999983
No 185
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.53 E-value=0.0013 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|+||+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999874
No 186
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.52 E-value=0.0033 Score=55.60 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||||+||||+++.+++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 187
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.51 E-value=0.025 Score=52.27 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=27.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC---CCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPEL---YKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~---~~~~~~~~~~~~ 123 (382)
+.|+||+|+||||++..++-....+.. ....+++++..+
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 899999999999999988755433210 123466666654
No 188
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.50 E-value=0.0018 Score=54.70 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|+||+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999987
No 189
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.49 E-value=0.013 Score=52.90 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+...+.-.+..+. .+++.||+|+||||+++.++..+
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 4555555566655 59999999999999999999876
No 190
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.48 E-value=0.013 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++..++..+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHH
Confidence 78999999999999999998874
No 191
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.46 E-value=0.008 Score=51.84 Aligned_cols=39 Identities=15% Similarity=0.368 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..++||+||+|.+... ....+..++...+....+++.|.
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SA 225 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 225 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEES
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEec
Confidence 5679999999976432 23445555555544444444443
No 192
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.45 E-value=0.002 Score=52.67 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||+++.++...
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999875
No 193
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.45 E-value=0.0021 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 194
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.44 E-value=0.0016 Score=53.72 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999987
No 195
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.44 E-value=0.015 Score=52.71 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..+.+..++..+ .++++.+|+|+|||..+...+...
T Consensus 33 Q~~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 33 QMKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp HHHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHH
Confidence 333444444432 369999999999999876655544
No 196
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.43 E-value=0.0085 Score=57.54 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=25.3
Q ss_pred CCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCceEEEEeecC
Q 016800 154 PPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
....+|||||+|.+.. .....+..++...+....+|+.|..
T Consensus 258 ~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT 300 (508)
T 3fho_A 258 RDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSAT 300 (508)
T ss_dssp TTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCC
Confidence 3568999999998754 2334445555555555666655543
No 197
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.40 E-value=0.002 Score=52.78 Aligned_cols=23 Identities=48% Similarity=0.907 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 198
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.40 E-value=0.0019 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 199
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.40 E-value=0.013 Score=49.34 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=25.5
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEee-cCcccc
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFIC-NYISRI 198 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~-~~~~~l 198 (382)
..+++|+||+|.+... ....+..++...+....+++.| +.+..+
T Consensus 150 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 150 TAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKL 195 (219)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGG
T ss_pred cceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHH
Confidence 4579999999987532 2344555566555455454444 444433
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.38 E-value=0.0022 Score=54.35 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+..++|.|++|+||||+++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33589999999999999999999873
No 201
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.38 E-value=0.0025 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.+++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999876
No 202
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.38 E-value=0.0086 Score=48.17 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998654
No 203
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.38 E-value=0.0094 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=17.3
Q ss_pred cEEEeCCCCCCHHHHH-HHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTA-LAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la-~~la~~l 106 (382)
++++.+|+|+|||... ..+...+
T Consensus 63 ~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 6999999999999774 3344444
No 204
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.37 E-value=0.02 Score=52.59 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=25.6
Q ss_pred CCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCceEEEEee
Q 016800 154 PPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
....+||+||+|.+.. .....+..++...+....+++.|
T Consensus 151 ~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 151 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp TTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred cccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 3667999999998854 44455666666555455555554
No 205
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.36 E-value=0.21 Score=42.79 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.++|.|.+|+|||++++.+...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3899999999999999998764
No 206
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.36 E-value=0.0023 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|++|+||||+++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 207
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.35 E-value=0.07 Score=42.86 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=16.1
Q ss_pred EEEeCCCCCCHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALA 101 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~ 101 (382)
+.|.||+|+||||+++.
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999999999999995
No 208
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.33 E-value=0.0032 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.|.||+|+||||+++.++..+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 209
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.32 E-value=0.0024 Score=53.14 Aligned_cols=23 Identities=48% Similarity=0.917 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|+||+||||+++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 210
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.31 E-value=0.04 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+|||++++.+...-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 49999999999999999998654
No 211
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.29 E-value=0.003 Score=53.94 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|++|+||||+++.+++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 212
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.29 E-value=0.0025 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||+++.+++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999999874
No 213
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.29 E-value=0.0022 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|+||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 214
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.29 E-value=0.017 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|.+|+|||+++..+...-+
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~f 38 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDSF 38 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCcCHHHHHHHHHhCCC
Confidence 89999999999999999886543
No 215
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.28 E-value=0.011 Score=64.05 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+||||+|||+++..++..+.
T Consensus 735 VlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 735 VEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999998764
No 216
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.27 E-value=0.0026 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999887
No 217
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.012 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||++++.+...-+
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCcCHHHHHHHHhcCCC
Confidence 89999999999999999987654
No 218
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.26 E-value=0.006 Score=50.71 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCC--C-cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 67 EEVVRVLTNTLETANC--P-HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~--~-~lll~Gp~G~GKt~la~~la~~l 106 (382)
++.+..+...+..... + .+.+.|++|+||||+++.++..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555555554322 2 28999999999999999999876
No 219
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.24 E-value=0.0028 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||+|+||||+++.+.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998875
No 220
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.24 E-value=0.013 Score=63.42 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=25.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++|+||||+|||+++..++...... ...+++++..
T Consensus 37 ~lI~G~pGsGKT~LAlqla~~~~~~---G~~vlYI~te 71 (1706)
T 3cmw_A 37 VEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 71 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhC---CCceEEEEec
Confidence 8999999999999999998765322 2344455443
No 221
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.23 E-value=0.0031 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|++|+||||+++.+++.+
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999987
No 222
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.23 E-value=0.03 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+.....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 389999999999999999987643
No 223
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.22 E-value=0.015 Score=49.25 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=24.4
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..++||+||+|.+... ....+..++...+....+++.+.
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 206 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSA 206 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEES
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEe
Confidence 5679999999987532 23445555555555555555543
No 224
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.22 E-value=0.0026 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|++|+||||+++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999886
No 225
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.21 E-value=0.0029 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 37899999999999999999987
No 226
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.21 E-value=0.0031 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 227
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.19 E-value=0.044 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=18.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++.+|+|+|||..+...+-..
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~~~ 82 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLEK 82 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHHHH
Confidence 59999999999998765554443
No 228
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.19 E-value=0.003 Score=51.15 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 38999999999999999999876
No 229
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.19 E-value=0.0094 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987643
No 230
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.19 E-value=0.0047 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999998873
No 231
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.18 E-value=0.046 Score=46.67 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=17.2
Q ss_pred cEEEeCCCCCCHHHHHH-HHHHHh
Q 016800 84 HMLFYGPPGTGKTTTAL-AIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~-~la~~l 106 (382)
++++.+|+|+|||..+. .+...+
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 59999999999998643 334444
No 232
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.18 E-value=0.018 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998754
No 233
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.17 E-value=0.0027 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 234
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.16 E-value=0.0032 Score=53.06 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=35.6
Q ss_pred ccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+-.+.+....+...+...+.+.++|.|++|+||||++..++..+
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33556667777777766677779999999999999999999886
No 235
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.15 E-value=0.0034 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 38999999999999999999875
No 236
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.0025 Score=52.26 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+||||+++.++..+.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999874
No 237
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.14 E-value=0.0025 Score=52.40 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.|.||+|+||||+++.++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999876
No 238
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.14 E-value=0.0032 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999886
No 239
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.12 E-value=0.016 Score=53.09 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=29.2
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.......++..+.+... ...+|++|.+..
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 56799999964 6777777777777765421 345777776543
No 240
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.11 E-value=0.0021 Score=53.58 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=21.8
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++...+.+.+.....+.-.+++.|++|+|||+++..+....+
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~ 55 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3455555555555444433599999999999999999986543
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.10 E-value=0.025 Score=50.13 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||++..++..+.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998874
No 242
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.08 E-value=0.0037 Score=51.61 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 243
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.07 E-value=0.019 Score=51.42 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=27.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+++.|+||+|||+++..++......+ ..++.+...
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE 105 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE 105 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC
Confidence 89999999999999999997764332 355656554
No 244
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.05 E-value=0.0038 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 245
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.05 E-value=0.0088 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.823 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999998873
No 246
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.04 E-value=0.018 Score=51.23 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=29.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+.+++|+||+- .+.......+.+.+.+......+|+++....
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 56799999975 5677777777777776544445666776544
No 247
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.04 E-value=0.0033 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
.++|.|++|+||||+++.+++.+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3899999999999999999998743
No 248
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.03 E-value=0.0039 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.02 E-value=0.015 Score=49.60 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=27.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~~~~~~~~ 123 (382)
++|+||+|+|||+++..++.....+. .....++.++...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 89999999999999999998642221 0123556666554
No 250
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.01 E-value=0.018 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+...-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 389999999999999999987643
No 251
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.00 E-value=0.04 Score=45.46 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+|||++++.+...-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 38999999999999999998654
No 252
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.00 E-value=0.0052 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+|||+++..+++.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999987
No 253
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.99 E-value=0.0069 Score=51.16 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++..+.++..+...+.+.++|.|++|+|||+++..++....
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345556677776666666699999999999999999998864
No 254
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.99 E-value=0.0049 Score=53.05 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999876
No 255
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.99 E-value=0.0037 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 256
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.98 E-value=0.028 Score=52.94 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+...+.+..++.. ++++.+|+|+|||..+..++...
T Consensus 11 ~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 11 RIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHH
Confidence 44444444444433 79999999999999988877665
No 257
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.98 E-value=0.16 Score=41.14 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.+++.|++|+|||++++.+...-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 359999999999999999987653
No 258
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.96 E-value=0.02 Score=53.00 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=25.7
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
..++||+||+|.+... ....+..++...+....+|+.|..
T Consensus 183 ~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 183 YIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp TCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred cCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 4679999999987432 234555666665556666665543
No 259
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.95 E-value=0.033 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~~ 29 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNHF 29 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987543
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.94 E-value=0.0043 Score=50.94 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+||||+++.++...
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999998754
No 261
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.93 E-value=0.011 Score=55.29 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||++..++..+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998863
No 262
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.93 E-value=0.004 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||+++.+++.+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 263
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.93 E-value=0.011 Score=55.15 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=35.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..++++--.......|...+. .....++|.||+|+||||++++++..+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456666545555566666643 2222389999999999999999999874
No 264
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.92 E-value=0.025 Score=48.05 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..+++|+||+|.+... ....+..++...+....+++.|.
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 210 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSA 210 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEES
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEe
Confidence 5679999999987432 23455566665555554554443
No 265
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.92 E-value=0.0041 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999976
No 266
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.91 E-value=0.028 Score=53.87 Aligned_cols=121 Identities=9% Similarity=0.125 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhh---
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--- 142 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 142 (382)
.+.....+..++.. .+.+++||+|+|||.++..++....... ...++.+-+.. .-..++.+.+..+.....
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~-~L~~Q~~~~~~~~~~~~~~~v 188 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTT-ALTTQMADDFVDYRLFSHAMI 188 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSH-HHHHHHHHHHHHTTSSCGGGE
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcH-HHHHHHHHHHHHhhcCCccce
Confidence 45555666655554 3589999999999999877776543211 12444444432 233445555544311100
Q ss_pred ---cCCCCC-----CC----------------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCc-eEEEEeecCc
Q 016800 143 ---GSGQRR-----GG----------------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV-TRFFFICNYI 195 (382)
Q Consensus 143 ---~~~~~~-----~~----------------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~ 195 (382)
.++... .. .......+|||||+|.+.... +..++...... .++.++++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~---~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKS---ISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHH---HHHHGGGCTTCCEEEEEESCGG
T ss_pred EEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCccc---HHHHHHhcccCcEEEEEEeCCC
Confidence 000000 00 012356899999999998754 33444444333 3444455543
No 267
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.91 E-value=0.022 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987543
No 268
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.90 E-value=0.038 Score=55.81 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=18.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.||+|+|||+++..+...
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999977666443
No 269
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.90 E-value=0.077 Score=44.37 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=20.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.+++.|++|+|||++++.+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345999999999999999998765
No 270
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.90 E-value=0.0049 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.+++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 271
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.89 E-value=0.013 Score=50.88 Aligned_cols=39 Identities=13% Similarity=0.315 Sum_probs=23.7
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
+.++|||||+|.+... ....+..++...+....+++.+.
T Consensus 201 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SA 240 (262)
T 3ly5_A 201 NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSA 240 (262)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECS
T ss_pred cCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEe
Confidence 5679999999987442 23445555555555455555443
No 272
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.89 E-value=0.11 Score=49.35 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+||||++..++..+.
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 273
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.88 E-value=0.018 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-+
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987643
No 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.87 E-value=0.0049 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 38899999999999999999874
No 275
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.87 E-value=0.046 Score=50.57 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCCH-HHHHHHHHHHHhcCCceEEEEee
Q 016800 155 PYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 155 ~~~vliiDe~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
..++||+||+|.+.. .....+..++...+....+++.|
T Consensus 179 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred heeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 567999999997643 23455556665555555555554
No 276
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.87 E-value=0.0048 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||++++.+...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999988654
No 277
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.86 E-value=0.018 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998764
No 278
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.85 E-value=0.0042 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48999999999999999998876
No 279
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.85 E-value=0.0098 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+.....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 389999999999999999987643
No 280
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.84 E-value=0.0053 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.+++..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 38999999999999999999875
No 281
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.84 E-value=0.026 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+|||++++.+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998654
No 282
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.84 E-value=0.0061 Score=49.56 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.++..+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999976
No 283
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.84 E-value=0.077 Score=50.03 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|+||+|||+++..++..+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 284
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.83 E-value=0.059 Score=42.50 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 285
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.83 E-value=0.056 Score=42.35 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.+++.|++|+|||++++.+...-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998753
No 286
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.82 E-value=0.009 Score=50.01 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||+++.++..+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999998873
No 287
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.82 E-value=0.02 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 14 i~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 288
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.82 E-value=0.14 Score=54.15 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHH
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~ 104 (382)
.|..++..+...+.+++..+.+++||.|+|||.++...+-
T Consensus 607 ~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~ 646 (1151)
T 2eyq_A 607 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 646 (1151)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHH
Confidence 4555555555555566655799999999999988764443
No 289
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.80 E-value=0.02 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987543
No 290
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.79 E-value=0.0038 Score=52.06 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=25.6
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
+..+|+|||++.++++..+.+..+.+ ....+|+.+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 56799999999999887777777763 233455544
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.79 E-value=0.0055 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||+++.++..+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999875
No 292
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.79 E-value=0.13 Score=40.36 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+...-+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 378999999999999999986543
No 293
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.78 E-value=0.097 Score=42.83 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||++++.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999876653
No 294
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.76 E-value=0.067 Score=47.29 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+.|++|+||||++..++..+.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 77889999999999999998874
No 295
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.75 E-value=0.024 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-+
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~~ 43 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDEF 43 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhhCCC
Confidence 89999999999999999987543
No 296
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.73 E-value=0.0065 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.+....
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998865
No 297
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.73 E-value=0.021 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 298
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.72 E-value=0.018 Score=51.77 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=29.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceEEeecCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASDD 124 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~~~~~~~~~ 124 (382)
++|+||||+|||+++..++.....+. .....+++++....
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 89999999999999999998754331 01245667766553
No 299
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.70 E-value=0.029 Score=51.49 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=24.7
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
+..+||+||+|.+... ....+..++...+....+++.|..
T Consensus 162 ~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 202 (394)
T 1fuu_A 162 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 202 (394)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred hCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEe
Confidence 5679999999987432 233455555555555555555543
No 300
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.68 E-value=0.019 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+.....
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~~ 46 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNHF 46 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECcCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987643
No 301
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.68 E-value=0.026 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+...-+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 399999999999999999987643
No 302
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.67 E-value=0.051 Score=46.35 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=24.3
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..+++|+||+|.+... ....+..++...+....+++.+.
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SA 215 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 215 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEES
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 5679999999987542 24445555655555555555543
No 303
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.66 E-value=0.01 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+|||+++..+++.+
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 7899999999999999999986
No 304
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.65 E-value=0.032 Score=46.55 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|++|+|||++++.+...
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999998754
No 305
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.63 E-value=0.14 Score=41.66 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
...+++.|++|+|||++++.+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999754
No 306
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.61 E-value=0.032 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+...-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~~ 45 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGRF 45 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 389999999999999999986543
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.61 E-value=0.0092 Score=48.01 Aligned_cols=26 Identities=19% Similarity=0.020 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++.+.|.|++|+||||++..++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 44589999999999999999998874
No 308
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.57 E-value=0.0075 Score=50.48 Aligned_cols=42 Identities=38% Similarity=0.513 Sum_probs=29.7
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
..+|+++ |+..++.. +..|. .+.|.||.|+||||+++.++..
T Consensus 4 ~i~pk~~----g~~~~l~~----i~~Ge--~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTL----GQKHYVDA----IDTNT--IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSH----HHHHHHHH----HHHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCH----hHHHHHHh----ccCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence 4567766 33334333 34443 4889999999999999999876
No 309
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.54 E-value=0.047 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=17.7
Q ss_pred CcEEEeCCCCCCHHHHH-HHHHHH
Q 016800 83 PHMLFYGPPGTGKTTTA-LAIAHQ 105 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la-~~la~~ 105 (382)
.++++.||+|+|||..+ ..+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~ 26 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVRE 26 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35899999999999875 445533
No 310
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.53 E-value=0.0084 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 311
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.52 E-value=0.024 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999987654
No 312
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.52 E-value=0.035 Score=52.55 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
-.+...+.+..++..+ ..++.||+|+|||..+..++...
T Consensus 94 l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp BCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 4566666666655542 49999999999999988887765
No 313
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.51 E-value=0.0098 Score=51.28 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|++|+||||+++.++..+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 59999999999999999999987
No 314
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.51 E-value=0.064 Score=44.58 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..+++.|++|+|||+++..+...-+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3499999999999999999987653
No 315
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.50 E-value=0.026 Score=46.48 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 49999999999999999998654
No 316
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.49 E-value=0.13 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++....
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 79999999999999999987653
No 317
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.46 E-value=0.44 Score=42.08 Aligned_cols=135 Identities=10% Similarity=0.126 Sum_probs=67.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC-----CCC-----------CCceEEeecCCCcc-hHHHHHHHHHHHHhhhcCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP-----ELY-----------KSRVLELNASDDRG-INVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~-----~~~-----------~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 146 (382)
.+.+.|.||+||||+++++...-... ... ...+..++.+.... ...+...+..........
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~-- 86 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD-- 86 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS--
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc--
Confidence 38999999999999999998653221 100 11122233333211 112222222222222211
Q ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch------hhhcc---cceEEecCCCHH
Q 016800 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE------PLASR---CAKFRFKPLSEE 217 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~------~l~sr---~~~i~~~~~~~~ 217 (382)
..--++++|=-+..+.. ...+++.+........+|++.|..+...+ .+... ...+.+...+..
T Consensus 87 -------ad~il~VvD~~~~~~~~-~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 87 -------VNAVVWVVDLRHPPTPE-DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDER 158 (301)
T ss_dssp -------CSEEEEEEETTSCCCHH-HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred -------CCEEEEEEECCCCCChH-HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCC
Confidence 14456777655556544 34455556554234456777776655421 11111 124556666666
Q ss_pred HHHHHHHHHHH
Q 016800 218 VMSSRVLHICN 228 (382)
Q Consensus 218 ~~~~~l~~~~~ 228 (382)
.+..++..+..
T Consensus 159 gv~~l~~~l~~ 169 (301)
T 1wf3_A 159 QVAELKADLLA 169 (301)
T ss_dssp HHHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 66666655554
No 318
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.46 E-value=0.024 Score=46.38 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++++.+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998754
No 319
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.46 E-value=0.0074 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 5
No 320
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.45 E-value=0.039 Score=43.76 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 321
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.45 E-value=0.029 Score=45.14 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 322
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.45 E-value=0.021 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998754
No 323
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.44 E-value=0.0078 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.||+|+|||+++..+++.+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 489999999999999999999873
No 324
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.43 E-value=0.046 Score=53.31 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=30.9
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+++++++||+- .+++.....+.+.+.+......+|+++.+...
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 56799999975 56777777888888765444456777776553
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.42 E-value=0.0088 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.|.|++|+||||+++.|++.+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 389999999999999999999763
No 326
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.41 E-value=0.0026 Score=52.90 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=22.1
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 78 ETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 78 ~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
...+.-.+++.|++|+|||+++..+....
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 33333359999999999999998887543
No 327
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.39 E-value=0.14 Score=47.83 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
++|.|++|+||||++..++..+..
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 788999999999999999988753
No 328
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.38 E-value=0.021 Score=46.26 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+...-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 389999999999999999987543
No 329
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.021 Score=45.37 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 330
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.36 E-value=0.023 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||++++.+.....
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987643
No 331
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.36 E-value=0.018 Score=45.70 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.+++.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999998853
No 332
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.35 E-value=0.013 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-+
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~~ 52 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDCY 52 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 99999999999999999987543
No 333
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.35 E-value=0.0088 Score=49.78 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
+.|.||+|+||||+++.++.
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 334
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.035 Score=45.42 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 335
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.33 E-value=0.0072 Score=49.74 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+|||+++..+++..
T Consensus 37 ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999875
No 336
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.33 E-value=0.01 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 38999999999999999999875
No 337
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.32 E-value=0.082 Score=42.93 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987543
No 338
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.32 E-value=0.012 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|+|++|+||||+++.+++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999975
No 339
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.29 E-value=0.012 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+|||+++..+++.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 37899999999999999999986
No 340
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.29 E-value=0.011 Score=50.25 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=21.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+||||+++.+++.+.
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999884
No 341
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.28 E-value=0.011 Score=47.88 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+....+
T Consensus 8 i~~~G~~~~GKssl~~~l~~~~~ 30 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTNAF 30 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999986543
No 342
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.28 E-value=0.012 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999999987
No 343
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.28 E-value=0.011 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|++|+||||+++.+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999999999987
No 344
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.27 E-value=0.067 Score=52.22 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=31.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||+- .+++.....+.+.+.+......+|+++.+..
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 539 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChH
Confidence 67899999976 5678888888888876555555677777654
No 345
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.27 E-value=0.0042 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
No 346
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.27 E-value=0.013 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+|||+++..+++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 38999999999999999999987
No 347
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.26 E-value=0.014 Score=47.31 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.6
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++.+.|.|++|+||||++..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 44589999999999999999998763
No 348
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.26 E-value=0.011 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999865
No 349
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.25 E-value=0.14 Score=43.05 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.++|.|++|+|||++++.+...
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999998764
No 350
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.25 E-value=0.014 Score=50.48 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.+++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999886
No 351
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.24 E-value=0.02 Score=56.44 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.....+...+. .+..++.||||||||+++..++..+.
T Consensus 182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4666666666653 23589999999999999988887765
No 352
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.22 E-value=0.14 Score=48.13 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=26.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+++.|+||+|||+++..++....... +..++.++..
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE 238 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLE 238 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 89999999999999999998764221 2345656554
No 353
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.22 E-value=0.032 Score=44.29 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.+++.|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999863
No 354
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.21 E-value=0.017 Score=55.11 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHH--HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 65 HQEEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 65 g~~~~~~~l~~~l--~~~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
..+++.+.+.+.. .......++|.|.+|+||||+++++++.+..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4566767777655 2223334899999999999999999999953
No 355
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.21 E-value=0.011 Score=49.47 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||+++.++..+
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 356
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.033 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 13 i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987543
No 357
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.18 E-value=0.019 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++++.+...
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999999754
No 358
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.18 E-value=0.013 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 99999999999999999987653
No 359
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.16 E-value=0.021 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999998653
No 360
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.16 E-value=0.12 Score=49.70 Aligned_cols=113 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEeCCCCCCHHHHHHH--HHHHhc-CCC---------------------------CCCCceEEeecCC---------Cc
Q 016800 85 MLFYGPPGTGKTTTALA--IAHQLF-GPE---------------------------LYKSRVLELNASD---------DR 125 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~--la~~l~-~~~---------------------------~~~~~~~~~~~~~---------~~ 125 (382)
++|.||+|+||||+++. ++.... +.. .....+..++... ..
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~ 121 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGF 121 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCSSH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhhccc
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC------CHHHHHHHHHHHHhcCC-ceEEEEeecCcccc
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM------TEDAQNALRRTMETYSK-VTRFFFICNYISRI 198 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l------~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l 198 (382)
+.......+....... +.++|+|||+-.+ .......++.++..... .+.+|+++.....+
T Consensus 122 ~l~~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 122 DLSALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred CHHHHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Q ss_pred --------chhhhcccceEE
Q 016800 199 --------IEPLASRCAKFR 210 (382)
Q Consensus 199 --------~~~l~sr~~~i~ 210 (382)
...+..|..++.
T Consensus 189 ~~~~~~~i~~~laD~vi~L~ 208 (525)
T 1tf7_A 189 GPIARYGVEEFVSDNVVILR 208 (525)
T ss_dssp SCSSTTSCHHHHCSEEEEEE
T ss_pred cccccccceeeeeeEEEEEE
No 361
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.16 E-value=0.011 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.|.|++|+||||+++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3899999999999999999985
No 362
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.15 E-value=0.059 Score=43.77 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||++++.+...-+
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999998887643
No 363
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.14 E-value=0.012 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38899999999999999999876
No 364
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.083 Score=42.78 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=20.9
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
+...+++.|++|+|||++++.+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3335999999999999999999853
No 365
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.13 E-value=0.0079 Score=48.63 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999998653
No 366
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.13 E-value=0.015 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+|||++++.+...-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 399999999999999999987643
No 367
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.12 E-value=0.013 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.++..+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 48999999999999999999876
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.11 E-value=0.025 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.+...+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999988763
No 369
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.08 E-value=0.043 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|+||+|+|||++++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999988765
No 370
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.07 E-value=0.027 Score=46.65 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+|||++++.+....+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 389999999999999999987654
No 371
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.07 E-value=0.031 Score=44.74 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 17 i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998654
No 372
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.04 E-value=0.0089 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.++..+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999998864
No 373
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.04 E-value=0.012 Score=50.33 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=19.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.+.|.||+|+||||+++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 389999999999999999984
No 374
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.03 E-value=0.076 Score=47.40 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=17.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
++++.+|+|+|||..+...+..
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 6999999999999876655544
No 375
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.01 E-value=0.093 Score=42.01 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.++|.|++|+|||++++.+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999865
No 376
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.01 E-value=0.061 Score=53.91 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=17.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHH
Q 016800 83 PHMLFYGPPGTGKTTTALAIA 103 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la 103 (382)
.++++.||+|+|||+.+....
T Consensus 47 ~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHHH
Confidence 369999999999999984433
No 377
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.08 Score=43.23 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 39999999999999999998754
No 378
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.98 E-value=0.019 Score=55.00 Aligned_cols=39 Identities=28% Similarity=0.260 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
...+...+.-.+..+. +++|.||+|+||||++++++..+
T Consensus 246 ~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 3555666665666654 59999999999999999998876
No 379
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.97 E-value=0.034 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||++++.+...-.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987543
No 380
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.95 E-value=0.14 Score=49.86 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=30.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||+- .+++.....+.+.+.+......+|+++.+..
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 67899999976 5677777788888876544445677776643
No 381
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.94 E-value=0.032 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 382
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.92 E-value=0.052 Score=44.24 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=19.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999998776543
No 383
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.92 E-value=0.25 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|.||+||||+++++...-
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8999999999999999998653
No 384
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.90 E-value=0.26 Score=46.26 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=27.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+++.|+||+|||+++..++...... +..++.+...
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 8999999999999999999877433 2355555544
No 385
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.88 E-value=0.066 Score=42.42 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997643
No 386
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.88 E-value=0.042 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||+++..+...-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998654
No 387
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.86 E-value=0.06 Score=52.72 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=30.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||+- .+++.....+.+.+.+......+|+++.+..
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 551 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTT
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 66899999975 5677777777777766544455677777654
No 388
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.029 Score=45.72 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-+
T Consensus 18 i~v~G~~~~GKssli~~l~~~~~ 40 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDDTF 40 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987643
No 389
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.83 E-value=0.017 Score=48.58 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.+.|.|++|+||||+++.++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999987
No 390
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.11 Score=42.33 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 49999999999999999998754
No 391
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.79 E-value=0.022 Score=47.00 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=4.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||++++.+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999988765
No 392
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.034 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..+++.|++|+|||+++..+...-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 349999999999999999998754
No 393
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.77 E-value=0.021 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 88999999999999999998874
No 394
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.11 Score=54.02 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=30.2
Q ss_pred chhhhhcCCCCCCc--ccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHH
Q 016800 49 QPWVEKYRPKQVKD--VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 49 ~~~~~k~~p~~~~~--~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~ 104 (382)
.||.+...|..... +--.+...+.+..+. .++ ++++.+|+|+|||.++.....
T Consensus 69 ~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~-~g~--~vLV~apTGSGKTlva~lai~ 123 (1010)
T 2xgj_A 69 TPIAEHKRVNEARTYPFTLDPFQDTAISCID-RGE--SVLVSAHTSAGKTVVAEYAIA 123 (1010)
T ss_dssp CCGGGCCCSSCSCCCSSCCCHHHHHHHHHHH-HTC--EEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcccChhhHHhCCCCCCHHHHHHHHHHH-cCC--CEEEECCCCCChHHHHHHHHH
Confidence 45655554532111 112344444444433 332 699999999999998754433
No 395
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.75 E-value=0.068 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|+||+|+|||++++.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 396
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.71 E-value=0.26 Score=44.30 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=26.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+++.|+||+|||+++..++..+... +..+..++..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlE 83 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLE 83 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCC
Confidence 8999999999999999999876432 2445555543
No 397
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.71 E-value=0.025 Score=50.12 Aligned_cols=23 Identities=39% Similarity=0.706 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 48999999999999999999876
No 398
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.70 E-value=0.13 Score=50.06 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=30.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||+- .+++.....+.+.+.+......+|+++.+..
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 56799999986 5677777778887776544445677776654
No 399
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.68 E-value=0.019 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=22.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+.|.|++|+||||.++.+++.+..
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998743
No 400
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.67 E-value=0.02 Score=46.82 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+....+
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~~ 43 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDAF 43 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 389999999999999999987643
No 401
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.64 E-value=0.021 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=8.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 11 i~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEECCCCC-------------
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999987543
No 402
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.63 E-value=0.022 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+.|.|++|+||||.++.+++.+...
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999988543
No 403
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.63 E-value=0.14 Score=50.19 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..|.+.+.||+|+||||++++++...
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCC
Confidence 44569999999999999999998764
No 404
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.63 E-value=0.019 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|++|+||||++..+.+.
T Consensus 19 vli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 999999999999999999885
No 405
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.62 E-value=0.095 Score=53.77 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=18.2
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
++|+||.|+||||+.+.++-
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998843
No 406
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.62 E-value=0.021 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+-|.||.|+||||+++.++..+
T Consensus 28 igI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 407
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.62 E-value=0.035 Score=56.13 Aligned_cols=40 Identities=38% Similarity=0.559 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
.+.....+...+.. +..++.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46666666665542 35899999999999999888887653
No 408
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.61 E-value=0.023 Score=47.95 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.|.|++|+||||.++.+++.+.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999999874
No 409
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.60 E-value=0.079 Score=45.45 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.1
Q ss_pred cEEEeCCCCCCHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALA 101 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~ 101 (382)
++++.+|+|+|||..+..
T Consensus 62 ~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 599999999999976443
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.59 E-value=0.012 Score=50.03 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=14.8
Q ss_pred cEEEeCCCCCCHHHHHHHHH-HHh
Q 016800 84 HMLFYGPPGTGKTTTALAIA-HQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la-~~l 106 (382)
.+.|.||+|+||||+++.++ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 38899999999999999998 654
No 411
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.58 E-value=0.026 Score=46.63 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998754
No 412
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.56 E-value=0.041 Score=50.07 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=23.4
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+.+.+.|.|+||+||||++..++..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3334899999999999999999988743
No 413
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.55 E-value=0.042 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.++|.|++|+|||++++.+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999998754
No 414
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.54 E-value=0.057 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||.|+||||+.+.++-..
T Consensus 579 ~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 579 VLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHhhh
Confidence 7899999999999999998654
No 415
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.52 E-value=0.016 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||+++..+...-+
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~~ 34 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNKF 34 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987543
No 416
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.49 E-value=0.092 Score=53.73 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.||.|+||||+.+.++..
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHHH
Confidence 899999999999999988643
No 417
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.46 E-value=0.13 Score=50.52 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (382)
.+..+.+..++.... ...+++|+.|.|||+++-.++..+.. . +.+.++.......+.+.... ...-..
T Consensus 178 ~dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~------~-~~vtAP~~~a~~~l~~~~~~----~i~~~~ 245 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAG------R-AIVTAPAKASTDVLAQFAGE----KFRFIA 245 (671)
T ss_dssp HHHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSS------C-EEEECSSCCSCHHHHHHHGG----GCCBCC
T ss_pred HHHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHh------C-cEEECCCHHHHHHHHHHhhC----CeEEeC
Confidence 344455554444322 34899999999999999999988742 1 23445554455544433211 100000
Q ss_pred CCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHH
Q 016800 147 RRGG-YPCPPYKIIILDEADSMTEDAQNALRR 177 (382)
Q Consensus 147 ~~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~ 177 (382)
.... .......++||||+-.++......|+.
T Consensus 246 Pd~~~~~~~~~dlliVDEAAaIp~pll~~ll~ 277 (671)
T 2zpa_A 246 PDALLASDEQADWLVVDEAAAIPAPLLHQLVS 277 (671)
T ss_dssp HHHHHHSCCCCSEEEEETGGGSCHHHHHHHHT
T ss_pred chhhhhCcccCCEEEEEchhcCCHHHHHHHHh
Confidence 0000 001145799999999998775544443
No 418
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.46 E-value=0.021 Score=50.10 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|+||+|+||||++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999997653
No 419
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.44 E-value=0.019 Score=48.66 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=18.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.|.|++|+||||.++.+++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999874
No 420
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.41 E-value=0.032 Score=47.54 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|++|+||||+++.++..+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 421
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.39 E-value=0.041 Score=48.82 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=25.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++++||||+|||+++..++....... ....+++++..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E 67 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSE 67 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEecc
Confidence 79999999999999988887763210 12345555554
No 422
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.38 E-value=0.029 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+|||++++.+...-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 389999999999999999987543
No 423
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.38 E-value=0.025 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 78999999999999999998763
No 424
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.37 E-value=0.21 Score=47.50 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=61.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh-h---cCCCCC---CC------
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-V---GSGQRR---GG------ 150 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~~~~~~---~~------ 150 (382)
+.++.-+.|+|||..+-+++..+..... ...++.+-+. .-..+|.+.+..+.... . .+.... ..
T Consensus 58 ~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~--~l~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi~ 134 (500)
T 1z63_A 58 GICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPL--SVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILT 134 (500)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECS--TTHHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEEE
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEccH--HHHHHHHHHHHHHCCCceEEEEecCchhccccCCcEEEe
Confidence 5889999999999998888777642221 1234444443 34677877777654210 0 000000 00
Q ss_pred ----------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 151 ----------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 151 ----------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
.....+.+||+||+|.+.... ....+.+.......++.+++++..
T Consensus 135 t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 135 TYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp EHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCST
T ss_pred eHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCC
Confidence 012357899999999984321 123344444444556777776543
No 425
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.36 E-value=0.039 Score=49.57 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998763
No 426
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.29 E-value=0.026 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.||+|+||||+++.++..+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 389999999999999999998763
No 427
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.29 E-value=0.029 Score=47.07 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|++|+||||+++.+++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999976
No 428
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.04 Score=55.81 Aligned_cols=38 Identities=37% Similarity=0.596 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.....+...+. .+..++.||||||||+++..+...+
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666665543 2358999999999999988777655
No 429
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.28 E-value=0.055 Score=45.32 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.+.|.|++|+||||.++.+++.+...
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999988543
No 430
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.25 E-value=0.067 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=17.7
Q ss_pred cEEEeCCCCCCHHHH-HHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTT-ALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~l-a~~la~~l 106 (382)
++++.||+|+|||.. +..+...+
T Consensus 23 ~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp EEEECCCTTSCTTTTHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999986 44444443
No 431
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.22 E-value=0.023 Score=49.86 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
+.|+|++|+||||+++.++.
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999994
No 432
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.21 E-value=0.025 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||+++.++..+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 433
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.21 E-value=0.018 Score=48.34 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++++.+...
T Consensus 18 i~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999985443
No 434
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.20 E-value=0.096 Score=52.78 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
.|.+++..+...+..+...+.++.||.|+|||.++...+-.
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 46667777776666666557999999999999887655443
No 435
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.19 E-value=0.035 Score=50.65 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 71 ~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..+.-.+..|. .++|.||+|+||||++++++..+
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence 44444445544 59999999999999999998875
No 436
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.17 E-value=0.05 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||+++.++..+
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999876
No 437
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.16 E-value=0.03 Score=47.82 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=19.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|+|+||+|||+++..++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999988754
No 438
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.14 E-value=0.026 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.+++.+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999987
No 439
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.12 E-value=0.027 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+|||+++..+++.+
T Consensus 5 i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHHC
Confidence 7899999999999999999987
No 440
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.10 E-value=0.12 Score=55.31 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.+.||+|+||||+++.+.+.+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 48999999999999999998865
No 441
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.10 E-value=0.031 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.+....
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999998764
No 442
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.10 E-value=0.032 Score=49.55 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||.|+||||+++.++..+.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998863
No 443
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.07 E-value=0.029 Score=47.83 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=29.7
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+++++.+... ...+|++|.+..
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 67799999965 5677888888888776432 345677777654
No 444
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.058 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=18.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++.||+|+|||.++...+...
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~~ 223 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQS 223 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHH
Confidence 59999999999998875554443
No 445
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.03 E-value=0.03 Score=47.88 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=29.2
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+++.+... ...+|+++.+..
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 67799999975 5688888888888766421 344666776543
No 446
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.01 E-value=0.029 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.|++|+||||+++.+.....
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 89999999999999999988653
No 447
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.99 E-value=0.02 Score=50.58 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=18.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|+||+|+||||+++.+++.+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999999876
No 448
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.98 E-value=0.55 Score=43.57 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.|++|+||||++..++..+.
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78889999999999999999874
No 449
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.94 E-value=0.017 Score=46.63 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+.|.|++|+||||+++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3478999999999999999999873
No 450
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.92 E-value=0.034 Score=45.08 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+|+||.|+|||+++.++.-.+.
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 79999999999999999988764
No 451
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.91 E-value=0.033 Score=46.73 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.|.|++|+||||.++.+++.+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999984
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.87 E-value=0.035 Score=44.15 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.+.|++|+|||++++.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999764
No 453
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.86 E-value=0.024 Score=47.91 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=29.2
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 154 ~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
.+++++++||.- .+.+.....+.+++.+.. ....+|+++.+..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 201 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 367799999975 567788888877776542 2445666766543
No 454
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.85 E-value=0.093 Score=43.29 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+.|.|+.|+||||.++.+++.+...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999988543
No 455
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.83 E-value=0.03 Score=45.47 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
++|.|++|+|||++++.++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999876
No 456
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.81 E-value=0.09 Score=52.74 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.3
Q ss_pred CcEEEeCCCCCCHHHHH-HHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTA-LAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la-~~la~~l 106 (382)
.++++.||+|+|||..+ ..+.+.+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHH
Confidence 36999999999999887 3444333
No 457
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.81 E-value=0.048 Score=43.68 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
...+++.|++|+|||++++.+...-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3459999999999999999997643
No 458
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.80 E-value=0.033 Score=53.71 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHH--cCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 67 EEVVRVLTNTLE--TANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 67 ~~~~~~l~~~l~--~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++.+.+..... ..+...+.|.|++|+||||+++.++..+.
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 455555554331 12222489999999999999999999874
No 459
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.79 E-value=0.03 Score=46.97 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 460
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.77 E-value=0.029 Score=47.88 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=30.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHH---hcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTME---TYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le---~~~~~~~~Il~~~~~~~ 197 (382)
+++++++||.- .+.+.....+.+.+. +......+|+++.....
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 56799999975 578888888888883 22234457777766543
No 461
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.76 E-value=0.043 Score=46.40 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+-|.|+||+||||.++.+++.+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999873
No 462
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.72 E-value=0.08 Score=51.10 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHHH--cCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 65 HQEEVVRVLTNTLE--TANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 65 g~~~~~~~l~~~l~--~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..+++.+.+..... ......++|+|++|+||||+++.+++.+.
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 44666666666652 22222389999999999999999999874
No 463
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.69 E-value=0.25 Score=48.61 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcC
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYS 183 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~ 183 (382)
+.++|||||++.++......+..+++..+
T Consensus 318 ~l~~lVlDEAH~l~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 318 AYDIIICDECHSTDSTTILGIGTVLDQAE 346 (666)
T ss_dssp SCSEEEETTTTCCSHHHHHHHHHHHHHTT
T ss_pred cccEEEEccchhcCccHHHHHHHHHHhhh
Confidence 57899999999888776555655665443
No 464
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.67 E-value=0.016 Score=50.30 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999886
No 465
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.67 E-value=0.041 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+||||+++.+++.+.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 466
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.65 E-value=0.041 Score=43.89 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||++++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3899999999999999998754
No 467
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.65 E-value=0.23 Score=53.30 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=30.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+.+|+|+||+- .+..+....+.+.+++......+|+++.....
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsT 1278 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNT 1278 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSST
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 56899999986 45666677778888776555556777765443
No 468
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.64 E-value=0.088 Score=47.73 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|+||+||||+.+.+...+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999865
No 469
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.62 E-value=0.61 Score=44.76 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=18.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++.+|+|+|||..+...+...
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCChHHHHHHHHHHHH
Confidence 59999999999998876655443
No 470
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.58 E-value=0.048 Score=45.36 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.|+.|+||||.++.+++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999883
No 471
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.57 E-value=0.039 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||+++.++...
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999876
No 472
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.57 E-value=0.85 Score=40.31 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++.+.+...
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999987654
No 473
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.56 E-value=0.034 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 474
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.53 E-value=0.34 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=18.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++.+|+|+|||..+...+...
T Consensus 21 ~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 21 NTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHH
Confidence 69999999999998866665443
No 475
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.53 E-value=0.041 Score=47.38 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=30.9
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+++.+.. ....+|+++.+..
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 56799999975 578888888888887753 3445677776654
No 476
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=93.53 E-value=0.44 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.+++.++|+|||.++..+++.+
T Consensus 302 ~gli~~~TGSGKT~t~~~l~~ll 324 (1038)
T 2w00_A 302 GGYIWHTTGSGKTLTSFKAARLA 324 (1038)
T ss_dssp SEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEecCCCCHHHHHHHHHHHH
Confidence 48999999999999987777554
No 477
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.50 E-value=0.035 Score=48.53 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=30.6
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~ 197 (382)
+++++|+||.- .+.+.....+.+++.+.. ....+|+++.+...
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 67899999975 578888888888876543 13456777766543
No 478
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.50 E-value=0.046 Score=49.65 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||.|+||||+++.++..+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcc
Confidence 78999999999999999998873
No 479
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.46 E-value=0.043 Score=47.75 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=31.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+++.+... ...+|+++.+..
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 56799999976 5788889999999987532 445677776544
No 480
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=93.45 E-value=0.32 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=17.3
Q ss_pred cEEEeCCCCCCHHHH-HHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTT-ALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~l-a~~la~~l 106 (382)
++++.+|+|+|||.. +..+...+
T Consensus 188 dvlv~a~TGSGKT~~~~lpil~~l 211 (618)
T 2whx_A 188 LTIMDLHPGAGKTKRILPSIVREA 211 (618)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 599999999999986 34444443
No 481
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.41 E-value=0.037 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998764
No 482
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.40 E-value=0.29 Score=45.68 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.3
Q ss_pred cEEEeCCCCCCHHHHH
Q 016800 84 HMLFYGPPGTGKTTTA 99 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la 99 (382)
++++.+|+|+|||...
T Consensus 95 d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 95 DLMACAQTGSGKTAAF 110 (434)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred CEEEECCCCCCchHHH
Confidence 5999999999999854
No 483
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.39 E-value=0.037 Score=47.90 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=30.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~ 197 (382)
+++++++||.- .+.+.....+.+++.+.. ....+|+++.+...
T Consensus 171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215 (257)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 67899999965 578888888888876542 24456777766543
No 484
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.39 E-value=0.3 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||.|+||||+.+.++-..
T Consensus 610 ~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 610 LIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 8999999999999999988653
No 485
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.37 E-value=0.037 Score=47.54 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=30.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+++.+......+|+++....
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~ 205 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 66899999975 5677888888877766533455677776654
No 486
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.36 E-value=0.038 Score=47.29 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=28.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~ 195 (382)
+++++++||.- .+.+.....+.+++.+.. ....+|+++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 67899999975 567888888887776542 234466677654
No 487
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.36 E-value=0.039 Score=46.83 Aligned_cols=42 Identities=5% Similarity=0.044 Sum_probs=29.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHH-HHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRT-METYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~-le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+. +.+......+|+++....
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 67899999975 5788888888886 444333445677776543
No 488
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.35 E-value=0.038 Score=47.92 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=27.9
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~ 195 (382)
+++++++||.- .+.+.....+.+++.+.. ....+|+++.+.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 67799999965 567777777777776542 234566666654
No 489
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.32 E-value=0.049 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|.||+||||+++.+++.+.
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999873
No 490
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.30 E-value=0.04 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48899999999999999998765
No 491
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.27 E-value=0.04 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999988754
No 492
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.23 E-value=0.71 Score=43.99 Aligned_cols=36 Identities=14% Similarity=-0.093 Sum_probs=27.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++|.|+||+|||+++..++..+.... ...++.++..
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E 280 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLE 280 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESS
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEecc
Confidence 89999999999999999998875431 2345555554
No 493
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.21 E-value=0.041 Score=47.85 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=29.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+..+..+.+++.+.. ....+|+++.+..
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence 67899999975 567888888888876643 2345677776543
No 494
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.19 E-value=0.052 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|++|+|||++++.+...
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999863
No 495
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.19 E-value=0.042 Score=47.46 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=29.6
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+++.+.. ....+|+++....
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 67899999975 678888888888776542 2445667776543
No 496
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.17 E-value=0.029 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 48999999999999999998643
No 497
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=93.15 E-value=0.33 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=16.3
Q ss_pred cEEEeCCCCCCHHHH-HHHHHHH
Q 016800 84 HMLFYGPPGTGKTTT-ALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~l-a~~la~~ 105 (382)
.+++.||+|+|||.. +..+...
T Consensus 21 ~~lv~a~TGsGKT~~~~~~~l~~ 43 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIVRE 43 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHHHH
T ss_pred eEEEECCCCCCHhhHHHHHHHHH
Confidence 469999999999983 4444433
No 498
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.14 E-value=0.042 Score=47.92 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=31.7
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.......+.+++.+... ...+|+++....
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 67899999975 5788888899999987643 455777776644
No 499
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.14 E-value=0.15 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999998743
No 500
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.13 E-value=0.042 Score=47.58 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=31.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+++++++||.- .+.+.....+.+.+.+......+|+++.....
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~ 216 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 56799999975 56788888888888765444557777776543
Done!