BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016801
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/322 (56%), Positives = 233/322 (72%), Gaps = 2/322 (0%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
+ WGGRF E +F S+++D+AL++ D+ ++ HA ML GL+S + +IL+G
Sbjct: 4 RTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKG 63
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
LD IE +IEAG F WR + EDVHMN+EA LT+++G P KLHTARSRNDQV TD RL+ R
Sbjct: 64 LDRIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLR 123
Query: 180 DAIDTIVRSIQRLQVALVKLALK--NEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDA 237
AID ++ + L+ LV+ A K + ++PGYTHLQRAQPVLL H LAY E L+RDA
Sbjct: 124 GAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDA 183
Query: 238 GRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLS 297
GRL+D + R+N PLGA ALAGTG PIDR TA L F APMRNS+DAV+ RDF LE LS
Sbjct: 184 GRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLS 243
Query: 298 ANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVI 357
A +I +HLSR+ EE +L+++EEFGF+ D+ +TGSSIMPQKKNPD +EL+R K+ RV+
Sbjct: 244 ALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVL 303
Query: 358 GDLVTLLTLCKGLPLAYNRDLQ 379
G V L + KGLPLAYN+DLQ
Sbjct: 304 GAFVGLSAVVKGLPLAYNKDLQ 325
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 305 bits (780), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 149/320 (46%), Positives = 215/320 (67%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
KLWGGRF S +EK SI+YD+ L + DI GS A+A L K G+++ ++ IL G
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
L++I + G F+ + ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ +
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMK 128
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
+++ I + +L LV+ A +I+PGYTHLQ+AQP+ LL++ L RD+ R
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
L + + R+N PLG+ ALAG L IDR M LEF + NS+DA+S+RDFV+EFLS
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFA 248
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
+++ IHLS++ E+ +++++ EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G
Sbjct: 249 TLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGR 308
Query: 360 LVTLLTLCKGLPLAYNRDLQ 379
L ++L + KGLP YN+DLQ
Sbjct: 309 LASILMVLKGLPSTYNKDLQ 328
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 303 bits (777), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 148/320 (46%), Positives = 215/320 (67%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
KLWGGRF S +EK SI+YD+ L + DI GS A+A L K G+++ ++ IL G
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
L++I + G F+ + ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ +
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMK 128
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
+++ I + +L LV+ A +I+PGYTHLQ+AQP+ LL++ L RD+ R
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
L + + R+N PLG+ ALAG L IDR M LEF + NS+DA+S+RDFV+EFLS
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFA 248
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
+++ IHLS++ E+ +++++ EFGF+T SD+ STG+S+MPQKKNPD +EL+R K+ RV G
Sbjct: 249 TLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGR 308
Query: 360 LVTLLTLCKGLPLAYNRDLQ 379
L ++L + KGLP YN+DLQ
Sbjct: 309 LASILMVLKGLPSTYNKDLQ 328
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/320 (46%), Positives = 215/320 (67%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
KLWGGRF S +EK SI+YD+ L + DI GS A+A L K G+++ ++ IL G
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
L++I + G F+ + ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ +
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMK 128
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
+++ I + +L LV+ A +I+PGY+HLQ+AQP+ LL++ L RD+ R
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYSHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
L + + R+N PLG+ ALAG L IDR M LEF + NS+DA+S+RDFV+EFLS
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFA 248
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
+++ IHLS++ E+ +++++ EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G
Sbjct: 249 TLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGR 308
Query: 360 LVTLLTLCKGLPLAYNRDLQ 379
L ++L + KGLP YN+DLQ
Sbjct: 309 LASILMVLKGLPSTYNKDLQ 328
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/320 (46%), Positives = 214/320 (66%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
KLWGGRF S +EK SI+YD+ L + DI GS A+A L K G+++ ++ IL G
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
L++I + G F+ + ED+H E L ++IG+ A KLHT RSRNDQV+TD +L+ +
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMK 128
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
+++ I + +L LV+ A +I+PGY HLQ+AQP+ LL++ L RD+ R
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
L + + R+N PLG+ ALAG L IDR M LEF + NS+DA+S+RDFV+EFLS
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFA 248
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
+++ IHLS++ E+ +++++ EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G
Sbjct: 249 TLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGR 308
Query: 360 LVTLLTLCKGLPLAYNRDLQ 379
L ++L + KGLP YN+DLQ
Sbjct: 309 LASILMVLKGLPSTYNKDLQ 328
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/320 (46%), Positives = 215/320 (67%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
KLWGGRF S +EK SI+YD+ L + DI GS A+A L K G+++ ++ IL G
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
L++I + G F+ + ED++ E L ++IG+ A KLHT RSRNDQV+TD +L+ +
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDINTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMK 128
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
+++ I + +L LV+ A +I+PGYTHLQ+AQP+ LL++ L RD+ R
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
L + + R+N PLG+ ALAG L IDR M LEF + NS+DA+S+RDFV+EFLS
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFA 248
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
+++ IHLS++ E+ +++++ EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+ RV G
Sbjct: 249 TLLMIHLSKMAEDLIIYSTSEFGFLTDSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGR 308
Query: 360 LVTLLTLCKGLPLAYNRDLQ 379
L ++L + KGLP YN+DLQ
Sbjct: 309 LASILMVLKGLPSTYNKDLQ 328
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 300 bits (769), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 149/320 (46%), Positives = 208/320 (65%), Gaps = 1/320 (0%)
Query: 61 LWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGL 120
LWGGRF ++ ++F +S+ +D L + DI+GS A + L G+++ ++ + L
Sbjct: 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 62
Query: 121 DEIERQIEA-GKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
+ + + A + + +D ED+H +E L D +G+ KKLHT RSRNDQV TD +LWC+
Sbjct: 63 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCK 122
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
D + ++ + ++LQ ALV+ A N+ ++PGYTHLQRAQPV H LAYVE L RD R
Sbjct: 123 DTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESR 182
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
LQD R++ PLG ALAGT IDR A L F + RNS+D+VSDRD VLE LSA
Sbjct: 183 LQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAA 242
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
+I +HLSR E+ + + + E GF+ SD V++GSS+MPQKKNPD +EL+RGK RV G
Sbjct: 243 AIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGA 302
Query: 360 LVTLLTLCKGLPLAYNRDLQ 379
L ++ KGLPLAYN+D+Q
Sbjct: 303 LTGMMMTLKGLPLAYNKDMQ 322
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/325 (46%), Positives = 207/325 (63%)
Query: 55 ASKEVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKN 114
AS+ KLWGGRF +V +EKF SI+YD+ L++ D+ GSKA++ L K GL++ ++ +
Sbjct: 2 ASESQKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMD 61
Query: 115 SILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDF 174
IL GLD++ + G F ++ ED+H E L ++IG A KLHT RSRNDQV+TD
Sbjct: 62 QILHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDL 121
Query: 175 RLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLE 234
RLW R T+ + L +V A ++ PGYTHLQRAQP+ H +L++ L
Sbjct: 122 RLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALT 181
Query: 235 RDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLE 294
RD+ RL + R R+N PLG+ A+AG L +DR + L F A NS+DA S+RDFV E
Sbjct: 182 RDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAE 241
Query: 295 FLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSA 354
FL S+ HLSR+ E+ +L+ ++EF F+ SD+ STGSS+MPQKKNPD +EL+R K+
Sbjct: 242 FLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPQKKNPDSLELIRSKAG 301
Query: 355 RVIGDLVTLLTLCKGLPLAYNRDLQ 379
RV G LL KGLP YN+DLQ
Sbjct: 302 RVFGRCAGLLMTLKGLPSTYNKDLQ 326
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/325 (45%), Positives = 216/325 (66%)
Query: 55 ASKEVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKN 114
AS+ KL GGRF S +EK SI+YD+ L + DI S A+A L K G+++ ++
Sbjct: 2 ASEGDKLMGGRFVGSTDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELE 61
Query: 115 SILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDF 174
IL GL++I + G F+ + ED+H E L ++IG+ A KLHT RSRN+QV+TD
Sbjct: 62 KILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDL 121
Query: 175 RLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLE 234
+L+ ++++ I + +L LV+ A +I+PGYTHLQ+AQP+ LL++ L
Sbjct: 122 KLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALT 181
Query: 235 RDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLE 294
RD+ RL + + R+N PLG+ ALAG L IDR M LEF + NS+DA+S+RDFV+E
Sbjct: 182 RDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVE 241
Query: 295 FLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSA 354
FLS +++ IHLS++ E+ +++++ EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+
Sbjct: 242 FLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAG 301
Query: 355 RVIGDLVTLLTLCKGLPLAYNRDLQ 379
RV G L ++L + KGLP YN+DLQ
Sbjct: 302 RVFGRLASILMVLKGLPSTYNKDLQ 326
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 207/325 (63%)
Query: 55 ASKEVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKN 114
AS+ KLWGGRF +V +EKF SI+YD+ L++ D+ GSKA++ L K GL++ ++ +
Sbjct: 2 ASESGKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMD 61
Query: 115 SILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDF 174
IL GLD++ + G F ++ ED+H E L ++IG A KLHT RSRNDQV+TD
Sbjct: 62 QILHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDL 121
Query: 175 RLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLE 234
RLW R T+ + L +V A ++ PGYTHLQRAQP+ H +L++ L
Sbjct: 122 RLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALT 181
Query: 235 RDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLE 294
RD+ RL + R R+N PLG+ A+AG L +DR + L F A NS+DA S+RDFV E
Sbjct: 182 RDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAE 241
Query: 295 FLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSA 354
FL S+ HLSR+ E+ +L+ ++EF F+ SD+ STGSS+MP+KKNPD +EL+R K+
Sbjct: 242 FLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAG 301
Query: 355 RVIGDLVTLLTLCKGLPLAYNRDLQ 379
RV G LL KGLP YN+DLQ
Sbjct: 302 RVFGRCAGLLMTLKGLPSTYNKDLQ 326
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 213/325 (65%)
Query: 55 ASKEVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKN 114
AS+ KL GGRF S ++ + SIS ++ L + DI S A+A L K G+++ ++
Sbjct: 2 ASEGDKLMGGRFVGSTDPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELE 61
Query: 115 SILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDF 174
IL GL++I ++ G + ED+ E L ++IG+ A KLHT RSRN+QV+TD
Sbjct: 62 KILSGLEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHTGRSRNEQVVTDL 121
Query: 175 RLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLE 234
+L+ ++++ I + +L LV+ A +I+PGYTHLQ+AQP+ LL++ L
Sbjct: 122 KLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALT 181
Query: 235 RDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLE 294
RD+ RL + + R+N PLG+ ALAG L IDR M LEF + NS+DA+S+RDFV+E
Sbjct: 182 RDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVE 241
Query: 295 FLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSA 354
FLS +++ IHLS++ E+ +++++ EFGF+T SD+ STGSS+MPQKKNPD +EL+R KS
Sbjct: 242 FLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSG 301
Query: 355 RVIGDLVTLLTLCKGLPLAYNRDLQ 379
RV G L ++L + KGLP YN+DLQ
Sbjct: 302 RVFGRLASILMVLKGLPSTYNKDLQ 326
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 284 bits (727), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 209/310 (67%), Gaps = 1/310 (0%)
Query: 71 TDAV-EKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEA 129
TD + EK SI+YD+ L + DI GS A+A L K G+++ ++ IL GL++I +
Sbjct: 1 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSK 60
Query: 130 GKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSI 189
G F+ + ED+H E L ++IG+ A KL+T RSRNDQV+TD +L+ ++++ I +
Sbjct: 61 GVFVVKQSDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTDLKLFMKNSLSIISTHL 120
Query: 190 QRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNF 249
+L LV+ A +I+PGYT+LQ+AQP+ LL++ L RD+ RL + + R+N
Sbjct: 121 LQLIKTLVERAAIEIDVILPGYTNLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINV 180
Query: 250 CPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRL 309
PLG+ ALAG L IDR M LEF + NS+DA+S+RDFV+EFLS +++ IHLS++
Sbjct: 181 LPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKM 240
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
E+ +++++ EFGF+T SD+ STGSS+MPQKKNPD +EL+R KS RV G L ++L + KG
Sbjct: 241 AEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKG 300
Query: 370 LPLAYNRDLQ 379
LP YN+DLQ
Sbjct: 301 LPSTYNKDLQ 310
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 281 bits (720), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 214/325 (65%)
Query: 55 ASKEVKLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKN 114
AS+ KL GGRF S ++ + S+S ++ L + DI S A+A L K G+++ ++
Sbjct: 1 ASEGDKLMGGRFVGSTDPIMQMLSTSMSTEQRLSEVDIQASIAYAKALEKAGILTKTELE 60
Query: 115 SILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDF 174
IL GL++I + G F+ ED+H E L ++IG+ A KL+T RSRN+QV+TD
Sbjct: 61 KILSGLEKISEEWSKGVFVVTQSDEDIHTANERRLKELIGDIAGKLNTGRSRNEQVVTDL 120
Query: 175 RLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLE 234
+L+ ++++ I + +L LV+ A +I+PGYTHLQ+AQP+ LL++ L
Sbjct: 121 KLFMKNSLSVISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALT 180
Query: 235 RDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLE 294
RD+ RL + + R+N PLG+ ALAG L IDR M L+F + NS+DA+S+RDFV+E
Sbjct: 181 RDSERLGEVKRRINVLPLGSGALAGNPLDIDREMLRSELDFASISLNSMDAISERDFVVE 240
Query: 295 FLSANSIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSA 354
FLS +++ IHLS++ E+ +++++ EFGF+T SD+ STGSS+MPQKKNPD +EL+R K+
Sbjct: 241 FLSVATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAG 300
Query: 355 RVIGDLVTLLTLCKGLPLAYNRDLQ 379
RV G L ++L + KGLP YN+DLQ
Sbjct: 301 RVFGRLASILMVLKGLPSTYNKDLQ 325
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 202/320 (63%)
Query: 60 KLWGGRFEESVTDAVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRG 119
KL GGRF SV +E + SIS ++ L + DI S A+A L K +++ ++ IL G
Sbjct: 7 KLLGGRFVGSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSG 66
Query: 120 LDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCR 179
L++I + G + ED+ IE L ++IG+ A KL T RSRN+QV+TD +L +
Sbjct: 67 LEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLK 126
Query: 180 DAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGR 239
+I I + +L LV+ A +I+PGYTHLQ+A P+ LL++ L RD+ R
Sbjct: 127 SSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSER 186
Query: 240 LQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSAN 299
L + + R+ PLG+ LAG L IDR + L+ T+ NSIDA+S+RDFV+E +S
Sbjct: 187 LGEVKKRITVLPLGSGVLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVELISVA 246
Query: 300 SIIAIHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
+++ IHLS+L E+ +++++ EFGF+T SD+ STGSS++PQKKNPD +EL+R K+ RV G
Sbjct: 247 TLLMIHLSKLAEDLIIFSTTEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSKAGRVFGR 306
Query: 360 LVTLLTLCKGLPLAYNRDLQ 379
L +L + KG+P +++DLQ
Sbjct: 307 LAAILMVLKGIPSTFSKDLQ 326
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 104/232 (44%), Gaps = 13/232 (5%)
Query: 153 IGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYT 212
+ E + +H + D + T L RDA+D I + +L L + ALK+ + G T
Sbjct: 93 VPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRT 152
Query: 213 HLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGA-----CALAGTGLPIDRF 267
LQ A PV L L + L R RLQ+ R R+ G AL +P+
Sbjct: 153 WLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEA 212
Query: 268 MTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFI-TP 326
+ AE L+ T P + + RD ++EF S ++A L + G + L E G + P
Sbjct: 213 L-AEQLKLTLPEQPWH---TQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEP 268
Query: 327 SDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 378
S GSS MP K+NP ++ G + RV G L TL +P + R L
Sbjct: 269 SAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFA---AMPQEHERSL 317
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 15/220 (6%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 215
P ++ ++S ND T + ++ ++ + + +Q +K A + G+I G THLQ
Sbjct: 131 PNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQ 190
Query: 216 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID----RFMTAE 271
A P+LL AY + RD R+ + R + +GA A+ GTGL D +T
Sbjct: 191 DAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAV-GTGLNADPEYISIVTEH 249
Query: 272 ALEFTA-PMRNS---IDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFG----F 323
+F+ P+R++ +DA + D E SA + I++S++ + L AS
Sbjct: 250 LAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEI 309
Query: 324 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
+ P+ GSSIMP K NP E++ + +V G+ +T+
Sbjct: 310 VLPAR--QPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTI 347
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 15/220 (6%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 215
P ++ ++S ND T + ++ ++ + + +Q +K A + G+I G THLQ
Sbjct: 131 PNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQ 190
Query: 216 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID----RFMTAE 271
A P+LL AY + RD R+ + R + +GA A+ GTGL D +T
Sbjct: 191 DAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAV-GTGLNADPEYISIVTEH 249
Query: 272 ALEFTA-PMRNS---IDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFG----F 323
+F+ P+R++ +DA + D E SA + I++S++ + L AS
Sbjct: 250 LAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEI 309
Query: 324 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
+ P+ GSSIMP K NP E++ + +V G+ +T+
Sbjct: 310 VLPAR--QPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTI 347
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 97/215 (45%), Gaps = 11/215 (5%)
Query: 154 GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 213
GE K LH + D + T L RD + I R I+ ++ AL LA + + G TH
Sbjct: 92 GEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTH 151
Query: 214 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPL----GACALAGT-GLPIDRFM 268
LQ A PV + ++ +R A RL++ R+ G A GT GL + R +
Sbjct: 152 LQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQREL 211
Query: 269 TAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT-PS 327
E L P SI S RD V E + ++++ L +L + + + E G + P
Sbjct: 212 ARE-LNLGVP---SITWHSARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPF 267
Query: 328 DSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVT 362
SS MPQK+NP EL+ AR++ + T
Sbjct: 268 VRHRGASSTMPQKQNPVSCELILA-GARIVRNHAT 301
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 19/219 (8%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 214
P ++ ++S ND T + +A + ++ ++Q+L AL AL ++ G THL
Sbjct: 151 PNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHL 210
Query: 215 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--PID------- 265
A PV L Y Q+E R++ C R+ +G A+ GTGL P D
Sbjct: 211 MDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGLNAPDDFGVRVVA 269
Query: 266 RFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT 325
+ L NS +A + RD ++E A IA+ L+++ + + W G +T
Sbjct: 270 VLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIAND-IRWMGS--GPLT 326
Query: 326 PSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 359
+ GSSIMP K NP E V +A+VIG+
Sbjct: 327 GLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGN 365
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 19/219 (8%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 214
P ++ ++S ND T + +A + ++ ++Q+L AL AL ++ G THL
Sbjct: 130 PNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHL 189
Query: 215 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--PID------- 265
A PV L Y Q+E R++ C R+ +G A+ GTGL P D
Sbjct: 190 MDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGLNAPDDFGVRVVA 248
Query: 266 RFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT 325
+ L NS +A + RD ++E A IA+ L+++ + + W G +T
Sbjct: 249 VLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIAND-IRWMGS--GPLT 305
Query: 326 PSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 359
+ GSSIMP K NP E V +A+VIG+
Sbjct: 306 GLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGN 344
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 25/239 (10%)
Query: 142 HMNIEAALTDIIG------EPAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQV 194
+MN + I G P ++ ++S ND T + +A + ++ +++ LQ
Sbjct: 118 NMNTNEVIASIAGANGVAVHPNDDVNMSQSSNDTFPTATHIAATEAAVSHLIPALEILQD 177
Query: 195 ALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGA 254
AL AL+ + ++ G THL A PV L Y Q+E R++ R+ +G
Sbjct: 178 ALATKALEWQSVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRATLPRLGELAIGG 237
Query: 255 CALAGTGLP---------IDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIH 305
A+ GTGL + ++ L NS +A + RD ++E A IA+
Sbjct: 238 TAV-GTGLNAPEGFGVKVVSVLVSQTGLPQLRTAANSFEAQAARDGLVEASGALRTIAVS 296
Query: 306 LSRLGEEWVLWASEEFGFITPSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 359
L+++ + + W G +T + GSSIMP K NP E V +A+VIG+
Sbjct: 297 LTKIAND-IRWMGS--GPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGN 352
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 17/226 (7%)
Query: 148 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEGL 206
A ++ P ++ ++S ND T L +A + ++ +++ LQ AL A + +
Sbjct: 124 ATPPVVVHPNDDVNMSQSSNDTFPTATHLAATEAAVRDLIPALEYLQQALATKAKAWKTV 183
Query: 207 IVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDR 266
+ G THL A PV L Y Q+E R++ R+ P+G A+ GTGL
Sbjct: 184 VKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELPIGGTAV-GTGLNAPD 242
Query: 267 FMTAEALEF---------TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWA 317
A+ +E +S +A + RD ++E A IA L+++ + + W
Sbjct: 243 GFGAKVVEVLKQSTGLSELKTASDSFEAQAARDGLVEGSGALKTIAASLTKIAND-IRWM 301
Query: 318 SE----EFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
G I D + GSSIMP K NP E V +A+VIG+
Sbjct: 302 GSGPLTGLGEIQLPD-LQPGSSIMPGKVNPVLPEAVTQVAAQVIGN 346
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 6/204 (2%)
Query: 144 NIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKN 203
+ A + D + A+ +H + D + T L CRDA+ + +Q+ + A
Sbjct: 88 QLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTY 147
Query: 204 EGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLP 263
++ G T LQ+A P+ L H L + +RD R+ + R+ LG + L
Sbjct: 148 RHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQ 207
Query: 264 IDRFMTAEALEFTAPMRNSIDAVS---DRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE 320
+ EA + ++ A + +RD ++E S II ++ ++ +W L E
Sbjct: 208 DQGSIVVEA--YAKQLKLGQTACTWHGERDRIVEIASVLGIITGNVGKMARDWSLMMQTE 265
Query: 321 FGFI-TPSDSVSTGSSIMPQKKNP 343
+ P+ GSS MP K+NP
Sbjct: 266 IAEVFEPTAKGRGGSSTMPHKRNP 289
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 19/219 (8%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 214
P ++ ++S ND T + +A + ++ ++Q+L AL AL ++ G THL
Sbjct: 129 PNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHL 188
Query: 215 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--PID------- 265
A PV L Y Q+E R++ C R+ +G A+ GTGL P D
Sbjct: 189 MDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGLNAPDDFGVRVVA 247
Query: 266 RFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT 325
+ L NS +A + RD ++E A IA+ L+++ + + W G +T
Sbjct: 248 VLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIAND-IRWMGS--GPLT 304
Query: 326 PSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 359
+ G+SIMP K NP E V +A+VIG+
Sbjct: 305 GLAEIQLPDLQPGASIMPGKVNPVLPEAVTQVAAQVIGN 343
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 19/219 (8%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 214
P ++ ++S ND T + +A + ++ ++Q+L AL AL ++ G THL
Sbjct: 129 PNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHL 188
Query: 215 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--PID------- 265
A PV L Y Q+E R++ C R+ +G A+ GTGL P D
Sbjct: 189 MDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGLNAPDDFGVRVVA 247
Query: 266 RFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFIT 325
+ L NS +A + RD ++E A IA+ L+++ + + W G +T
Sbjct: 248 VLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIAND-IRWMGS--GPLT 304
Query: 326 PSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 359
+ G SIMP K NP E V +A+VIG+
Sbjct: 305 GLAEIQLPDLQPGCSIMPGKVNPVLPEAVTQVAAQVIGN 343
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 125/287 (43%), Gaps = 47/287 (16%)
Query: 116 ILRGLDEIERQIEAGKF-------MWRTDR-EDVHMNIEAALTDIIGE------------ 155
I +D+ +I AG+F +W+T +MN+ + I E
Sbjct: 90 IATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPV 149
Query: 156 -PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKL--ALKNEG-----LI 207
P ++ +S ND T I T++ + Q+L AL L L+++ +I
Sbjct: 150 HPNDHVNKGQSSNDSFPTAMH------IATVLATKQQLIPALNNLLTYLQDKSKDWDKII 203
Query: 208 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLP---- 263
G THLQ A P+ L+ Y+ Q+E R++D ++ G A+ GTG+
Sbjct: 204 KIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAV-GTGINSKIG 262
Query: 264 IDRFMTAEALEFT-APMR---NSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASE 319
D + EFT P + N ++++ D ++EF + IA+ L ++ + L S
Sbjct: 263 FDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSG 322
Query: 320 E---FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
G + ++ GSSIMP K NP +E + +V+G+ VT+
Sbjct: 323 PRCGLGELHLPEN-EPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTV 368
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 19/228 (8%)
Query: 147 AALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDA-IDTIVRSIQRLQVALVKLALKNEG 205
AA + P ++ ++S ND T + +A + ++ +++ L +L A +
Sbjct: 139 AAANGVTVHPNDHVNMSQSSNDTFPTATHIAATEAAVRHLIPALEVLHASLAAKAKQWRT 198
Query: 206 LIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID 265
++ G THL A PV L Y Q+E R++ R+ +G A+ GTGL
Sbjct: 199 VVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELAIGGTAV-GTGLNAP 257
Query: 266 RFMTAEALEF------TAPMRNSID---AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLW 316
A+ +E A +R ++D A + RD ++E A IA+ L+++ + + W
Sbjct: 258 EGFGAKVVEVLVNETGLAELRTAVDSFEAQAARDGLVEASGALRTIAVSLTKIAND-IRW 316
Query: 317 ASEEFGFITPSDSV-----STGSSIMPQKKNPDPMELVRGKSARVIGD 359
G +T + GSSIMP K NP E V + +V+G+
Sbjct: 317 MGS--GPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVACQVVGN 362
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 20/219 (9%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 214
P + ++S ND T + I + ++ + L+ AL + + + ++ G THL
Sbjct: 155 PNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHL 214
Query: 215 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI---------D 265
Q A P+ L YV+Q+E R+ ++F G A+ GTGL +
Sbjct: 215 QDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAV-GTGLNTKPGFDVKIAE 273
Query: 266 RFMTAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW-VLWASEEFGF 323
+ L+F TAP N +A++ D ++E A + +A L ++ ++ L + G+
Sbjct: 274 QISKETGLKFQTAP--NRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGY 331
Query: 324 ---ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
+ P + GSSIMP K NP E + +V+G+
Sbjct: 332 HELMLPEN--EPGSSIMPGKVNPTQNEALTQVCVQVMGN 368
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 146/343 (42%), Gaps = 44/343 (12%)
Query: 55 ASKEVKLWGGRFEESVTD---AVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDS 111
A +LWG + + S+ + + EK + + + AL K +A A++ + G+++
Sbjct: 11 AVPAARLWGAQTQRSLQNFKISTEKQSPELIHALALIK------RAAAAVNLELGVLAQD 64
Query: 112 DKNSILRGLDEIERQIEAGKF---MWRTDR-EDVHMNIEAAL----TDIIG--------- 154
N+I+ DEI A +F +W+T +MN+ + ++++G
Sbjct: 65 KANAIVAAADEIIAGRHADEFPLAVWQTGSGTQTNMNLNEVIANRASELLGGERGESRAV 124
Query: 155 EPAKKLHTARSRNDQVLTDFRLWC-RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 213
P ++ +S ND T + R +D ++ +++ L+ L A ++ G TH
Sbjct: 125 HPNDDVNRGQSSNDVFPTAMHIAAARAIVDHLLPALRTLRATLDAKAAAFADIVKIGRTH 184
Query: 214 LQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID-RFMTAEA 272
LQ A P+ L YV QL++ ++ + G A+ GTGL +F A
Sbjct: 185 LQDATPLTLGQEFSGYVAQLDQGIRHVEAALPHLYELAQGGTAV-GTGLNAHPKFAAGVA 243
Query: 273 LEF---------TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE--- 320
E +AP N + ++ D ++ A +A L ++ + AS
Sbjct: 244 AEIGRLTGLPFVSAP--NKFEVMAAADALVFAHGALKTVAASLMKIANDIRWLASGPRCG 301
Query: 321 FGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
G ++ ++ GSSIMP K NP E V +V G+ V +
Sbjct: 302 LGELSIPEN-EPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVAV 343
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 37/282 (13%)
Query: 114 NSILRGLDEIERQIEAGKF---MWRTDR-EDVHMNIEAALTD-----IIGE--------P 156
N+I++ DE+ F +W+T +MN+ +++ + GE P
Sbjct: 98 NAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHP 157
Query: 157 AKKLHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 215
++ ++S ND T + + + ++ +Q+L AL + + +I G TH Q
Sbjct: 158 NDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQ 217
Query: 216 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI---------DR 266
A P+ L YV+Q++ R++ R+ G A+ GTGL +
Sbjct: 218 DAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAV-GTGLNTRIGFAEKVAAK 276
Query: 267 FMTAEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EEFG 322
L F TAP N +A++ D ++E A + A L ++ + S G
Sbjct: 277 VAALTGLPFVTAP--NKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLG 334
Query: 323 -FITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
I P + GSSIMP K NP E + +A+V+G+ V +
Sbjct: 335 ELILPENE--PGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAV 374
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 9/233 (3%)
Query: 149 LTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIV 208
+++ +GE K +H + D V T + A D I + ++R L + A + ++
Sbjct: 77 VSETLGEERKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLM 136
Query: 209 PGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLP--IDR 266
G TH A+P + + +++R+ R + R + + +P I+
Sbjct: 137 MGRTHGVHAEPTTFGVKMALWYTEMQRNLQRFKQVREEIEVGKMSGAVGTFANIPPEIES 196
Query: 267 FMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEW-VLWASEEFGFIT 325
++ TAP+ RD +++ ++IA L + E L +E
Sbjct: 197 YVCKHLGIGTAPVSTQ---TLQRDRHAYYIATLALIATSLEKFAVEIRNLQKTETREVEE 253
Query: 326 PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 378
GSS MP K+NP E + G S RVI +T T + +PL + RD+
Sbjct: 254 AFAKGQKGSSAMPHKRNPIGSENITGIS-RVIRGYIT--TAYENVPLWHERDI 303
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 15/235 (6%)
Query: 150 TDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVP 209
T +GE K +H + D V T + A + I++ ++ L A +++ I+
Sbjct: 89 TPALGEERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMM 148
Query: 210 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALA-GTGLPIDRFM 268
G TH A+P L + E+++R+ R + N +G + A GT ID F+
Sbjct: 149 GRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQA---ANTVRVGKLSGAVGTYANIDPFV 205
Query: 269 TAEALEF----TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWV-LWASEEFGF 323
E AP+ RD ++S ++IA + ++ E L SE
Sbjct: 206 EKYVCENLGLEAAPISTQ---TLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREV 262
Query: 324 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 378
GSS MP K+NP E + G ARVI ++T + +PL + RD+
Sbjct: 263 EEAFAKGQKGSSAMPHKRNPIGSENMTG-LARVIRGY--MMTAYENVPLWHERDI 314
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 102/233 (43%), Gaps = 7/233 (3%)
Query: 148 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLI 207
A+++ +GE K +H + D V T + A D +++ ++R + + A +++ +
Sbjct: 76 AVSESLGEERKWVHYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTV 135
Query: 208 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRF 267
+ G TH A+P L + E+++R+ R + + + + GT ID F
Sbjct: 136 MMGRTHGVHAEPTTFGLKLALWHEEMKRNLERFKQAKAGIEVGKISGA--VGTYANIDPF 193
Query: 268 MTAEALEFTAPMRNSIDAVS-DRDFVLEFLSANSIIAIHLSRLGEEWV-LWASEEFGFIT 325
+ E I + RD ++++ ++IA + + E L SE
Sbjct: 194 VEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEE 253
Query: 326 PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDL 378
GSS MP K+NP E + G ARVI ++T + +PL + RD+
Sbjct: 254 FFAKGQKGSSAMPHKRNPIGSENMTG-MARVIRGY--MMTAYENVPLWHERDI 303
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 30/213 (14%)
Query: 154 GEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTH 213
E K H + +D + + L RD++ +++ ++ L +L+ A + + +I G +H
Sbjct: 82 AETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSH 141
Query: 214 LQRAQPVLL-QHLLLAYVE---------QLERDAGRLQDCRVRMNFCPLGA----CALAG 259
A+P+ Q L AYVE ++D +Q N+C L A
Sbjct: 142 GMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADI 201
Query: 260 TGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWV-LWAS 318
GLP++ T V RD + + +S + +IA + RL E L S
Sbjct: 202 LGLPVEEVST---------------QVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRS 246
Query: 319 EEFGFITPSDSVSTGSSIMPQKKNPDPMELVRG 351
+ F GSS MP KKNP E + G
Sbjct: 247 DVFEVYEGFSKGQKGSSTMPHKKNPISTENLTG 279
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 136/325 (41%), Gaps = 38/325 (11%)
Query: 73 AVEKF---TESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSILRGLDEIERQIEA 129
A+E F IS + +M KA A + I S N+I+ DE+ +
Sbjct: 30 AIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEV---LNN 86
Query: 130 GKFMWRTDRE--------DVHMNIEAALTDI--------IGE-----PAKKLHTARSRND 168
GK M + + V+MN L +I GE P ++ +S ND
Sbjct: 87 GKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTND 146
Query: 169 QVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLA 228
T FR+ ++ +V +I +L+ + A++ + ++ G T LQ A P+ L A
Sbjct: 147 AYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRA 206
Query: 229 YVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL-------PIDRFMTAEALEF-TAPMR 280
+ L+ + +Q + LGA A+ GTGL P+ AE F P
Sbjct: 207 FSILLKEEVKNIQRTAELLLEVNLGATAI-GTGLNTPKEYSPLAVKKLAEVTGFPCVPAE 265
Query: 281 NSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD--SVSTGSSIMP 338
+ I+A SD + A +A+ +S++ + L +S + + + GSSIMP
Sbjct: 266 DLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMP 325
Query: 339 QKKNPDPMELVRGKSARVIGDLVTL 363
K NP E+V +VIG+ T+
Sbjct: 326 AKVNPVVPEVVNQVCFKVIGNDTTV 350
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 144/339 (42%), Gaps = 46/339 (13%)
Query: 60 KLWGGRFEESVTD---AVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSI 116
KLWG + + S+ + EK S+ + AL K +A A + GL+S+ ++I
Sbjct: 20 KLWGAQTQRSLEHFRISTEKMPTSLIHALALTK------RAAAKVNEDLGLLSEEKASAI 73
Query: 117 LRGLDEIERQIEAGKF---MWRTDR-EDVHMNIEAAL----TDIIG---------EPAKK 159
+ DE+ +F +W+T +MN+ L ++++G P
Sbjct: 74 RQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDD 133
Query: 160 LHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 218
++ ++S ND T + A+ ++ ++ L L + + ++ G THLQ A
Sbjct: 134 VNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDAT 193
Query: 219 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI---------DRFMT 269
P+ L + +V LE + ++ + LG A+ GTGL D
Sbjct: 194 PLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYARRVADELAV 252
Query: 270 AEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE----FGFI 324
F TAP N +A++ D +++ A +A L ++ + V W + G I
Sbjct: 253 ITCAPFVTAP--NKFEALATCDALVQAHGALKGLAASLMKIAND-VRWLASGPRCGIGEI 309
Query: 325 TPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
+ ++ GSSIMP K NP E + +V+G+ V +
Sbjct: 310 SIPEN-QPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAI 347
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 144/339 (42%), Gaps = 46/339 (13%)
Query: 60 KLWGGRFEESVTD---AVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSI 116
KLWG + + S+ + EK S+ + AL K +A A + GL+S+ ++I
Sbjct: 20 KLWGAQTQRSLEHFRISTEKMPTSLIHALALTK------RAAAKVNEDLGLLSEEKASAI 73
Query: 117 LRGLDEIERQIEAGKF---MWRTDR-EDVHMNIEAAL----TDIIG---------EPAKK 159
+ DE+ +F +W+T +MN+ L ++++G P
Sbjct: 74 RQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDD 133
Query: 160 LHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 218
++ ++S ND T + A+ ++ ++ L L + + ++ G THLQ A
Sbjct: 134 VNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDAT 193
Query: 219 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI---------DRFMT 269
P+ L + +V LE + ++ + LG A+ GTGL D
Sbjct: 194 PLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYARRVADELAV 252
Query: 270 AEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE----FGFI 324
F TAP N +A++ D +++ A +A L ++ + V W + G I
Sbjct: 253 ITCAPFVTAP--NKFEALATCDALVQAHGALKGLAASLMKIAND-VRWLASGPRCGIGEI 309
Query: 325 TPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
+ ++ GSSIMP K NP E + +V+G+ V +
Sbjct: 310 SIPEN-EPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAI 347
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 144/339 (42%), Gaps = 46/339 (13%)
Query: 60 KLWGGRFEESVTD---AVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSI 116
KLWG + + S+ + EK S+ + AL K +A A + GL+S+ ++I
Sbjct: 20 KLWGAQTQRSLEHFRISTEKMPTSLIHALALTK------RAAAKVNEDLGLLSEEKASAI 73
Query: 117 LRGLDEIERQIEAGKF---MWRTDR-EDVHMNIEAAL----TDIIG---------EPAKK 159
+ DE+ +F +W+T +MN+ L ++++G P
Sbjct: 74 RQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVNPNDD 133
Query: 160 LHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 218
++ ++S ND T + A+ ++ ++ L L + + ++ G THLQ A
Sbjct: 134 VNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDAT 193
Query: 219 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI---------DRFMT 269
P+ L + +V LE + ++ + LG A+ GTGL D
Sbjct: 194 PLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYARRVADELAV 252
Query: 270 AEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE----FGFI 324
F TAP N +A++ D +++ A +A L ++ + V W + G I
Sbjct: 253 ITCAPFVTAP--NKFEALATCDALVQAHGALKGLAASLMKIAND-VRWLASGPRCGIGEI 309
Query: 325 TPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
+ ++ GSSIMP K NP E + +V+G+ V +
Sbjct: 310 SIPEN-EPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAI 347
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 144/339 (42%), Gaps = 46/339 (13%)
Query: 60 KLWGGRFEESVTD---AVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSI 116
KLWG + + S+ + EK S+ + AL K +A A + GL+S+ ++I
Sbjct: 20 KLWGAQTQRSLEHFRISTEKMPTSLIHALALTK------RAAAKVNEDLGLLSEEKASAI 73
Query: 117 LRGLDEIERQIEAGKF---MWRTDR-EDVHMNIEAAL----TDIIG---------EPAKK 159
+ DE+ +F +W+T +MN+ L ++++G P
Sbjct: 74 RQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDD 133
Query: 160 LHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 218
++ ++S ND T + A+ ++ ++ L L + + ++ G THLQ A
Sbjct: 134 VNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDAT 193
Query: 219 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI---------DRFMT 269
P+ L + +V LE + ++ + LG A+ GTGL D
Sbjct: 194 PLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYARRVADELAV 252
Query: 270 AEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE----FGFI 324
F TAP N +A++ D +++ A +A L ++ + V W + G I
Sbjct: 253 ITCAPFVTAP--NKFEALATCDALVQAHGALKGLAASLMKIAND-VRWLASGPRCGIGEI 309
Query: 325 TPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
+ ++ GSSIMP K NP E + +V+G+ V +
Sbjct: 310 SIPEN-EPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAI 347
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 15/220 (6%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 215
P ++ ++S ND T RL + + + ++ RL A + +I G T LQ
Sbjct: 134 PNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQ 193
Query: 216 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEAL-- 273
A P+ L A+ L D RL++ LG A+ GT + +A+
Sbjct: 194 DAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAI-GTRINASHAYAEQAIVE 252
Query: 274 -------EFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EEFGF 323
E A N ++A D + F IA+ LS++ + L +S G
Sbjct: 253 LSQISGIELKA-TGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGE 311
Query: 324 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
I +V GSSIMP K NP E V +VIG+ +T+
Sbjct: 312 IR-LPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTV 350
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 15/220 (6%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQ 215
P ++ ++S ND T RL + + + ++ RL A + +I G T LQ
Sbjct: 151 PNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQ 210
Query: 216 RAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEAL-- 273
A P+ L A+ L D RL++ LG A+ GT + +A+
Sbjct: 211 DAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAI-GTRINASHAYAEQAIVE 269
Query: 274 -------EFTAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EEFGF 323
E A N ++A D + F IA+ LS++ + L +S G
Sbjct: 270 LSQISGIELKA-TGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGE 328
Query: 324 ITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
I +V GSSIMP K NP E V +VIG+ +T+
Sbjct: 329 IR-LPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTV 367
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 144/339 (42%), Gaps = 46/339 (13%)
Query: 60 KLWGGRFEESVTD---AVEKFTESISYDKALYKHDIMGSKAHASMLAKQGLISDSDKNSI 116
KLWG + + S+ + EK S+ + AL K +A A + GL+S+ ++I
Sbjct: 20 KLWGAQTQRSLEHFRISTEKMPTSLIHALALTK------RAAAKVNEDLGLLSEEKASAI 73
Query: 117 LRGLDEIERQIEAGKF---MWRTDR-EDVHMNIEAAL----TDIIG---------EPAKK 159
+ DE+ +F +W+T +MN+ L ++++G P
Sbjct: 74 RQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDD 133
Query: 160 LHTARSRNDQVLTDFRLWCRDAI-DTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQ 218
++ ++S ND T + A+ ++ ++ L L + + ++ G T+LQ A
Sbjct: 134 VNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDAT 193
Query: 219 PVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPI---------DRFMT 269
P+ L + +V LE + ++ + LG A+ GTGL D
Sbjct: 194 PLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYARRVADELAV 252
Query: 270 AEALEF-TAPMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEE----FGFI 324
F TAP N +A++ D +++ A +A L ++ + V W + G I
Sbjct: 253 ITCAPFVTAP--NKFEALATCDALVQAHGALKGLAASLMKIAND-VRWLASGPRCGIGEI 309
Query: 325 TPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
+ ++ GSSIMP K NP E + +V+G+ V +
Sbjct: 310 SIPEN-EPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAI 347
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 9/244 (3%)
Query: 103 AKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDREDVHMNIEAALTDIIGEPAKKLHT 162
A+ + +D + +I+ GL E + A + D V I + G+ A K+H
Sbjct: 45 AEASIFADDEAEAIVSGLSEFAADMSALRHGVAKDGVVVPELIRQMRAAVAGQAADKVHF 104
Query: 163 ARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLL 222
+ D + T L + A + I + L L LA ++ + GYT +Q A + +
Sbjct: 105 GATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITV 164
Query: 223 QHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNS 282
++ LER RL+ G A L + L + +
Sbjct: 165 ADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLGDNAGAVRADLAKRLGLADR 224
Query: 283 IDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFITPSD---SVSTGSSIMPQ 339
+ RD + EF + S++ L + G++ L A E G S+ S GSS MP
Sbjct: 225 PQWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMA--EIG----SEIRLSGGGGSSAMPH 278
Query: 340 KKNP 343
K+NP
Sbjct: 279 KQNP 282
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 15/162 (9%)
Query: 210 GYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPID-RF- 267
G THL A P+ L + ++ QL+ +++ + +G A+ GTGL RF
Sbjct: 185 GRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAV-GTGLNAHPRFG 243
Query: 268 -MTAEAL--EFTAPMR---NSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEF 321
+ A+ L E P R N A++ D ++ + A +A L ++G + AS +
Sbjct: 244 ELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPY 303
Query: 322 ---GFIT-PSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGD 359
G IT P++ GSSIMP K NP +E + RV G+
Sbjct: 304 AGIGEITIPANE--PGSSIMPGKVNPTQVEALTMVVVRVYGN 343
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 4/208 (1%)
Query: 148 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLI 207
+ +IGE ++ H + +D + T L +A ++ S++ L ++A + +
Sbjct: 76 GIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTP 135
Query: 208 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRF 267
G TH A+P +L + +++R+ RL+ +++ + +P +
Sbjct: 136 TIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPE-- 193
Query: 268 MTAEALEFTAPMRNSIDA-VSDRDFVLEFLSANSIIAIHLSRLGEEWV-LWASEEFGFIT 325
+ +AL + + V RD +LS +I+A + R+ E L +E
Sbjct: 194 VEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEE 253
Query: 326 PSDSVSTGSSIMPQKKNPDPMELVRGKS 353
P GSS MP KKNP E + G S
Sbjct: 254 PFRKGQRGSSAMPHKKNPITCERLTGLS 281
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 4/208 (1%)
Query: 148 ALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRLQVALVKLALKNEGLI 207
+ +IGE ++ H + +D + T L +A ++ S++ L ++A + +
Sbjct: 75 GIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTP 134
Query: 208 VPGYTHLQRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGLPIDRF 267
G TH A+P +L + +++R+ RL+ +++ + +P +
Sbjct: 135 TIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPE-- 192
Query: 268 MTAEALEFTAPMRNSIDA-VSDRDFVLEFLSANSIIAIHLSRLGEEWV-LWASEEFGFIT 325
+ +AL + + V RD +LS +I+A + R+ E L +E
Sbjct: 193 VEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEE 252
Query: 326 PSDSVSTGSSIMPQKKNPDPMELVRGKS 353
P GSS MP KKNP E + G S
Sbjct: 253 PFRKGQRGSSAMPHKKNPITCERLTGLS 280
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 18/222 (8%)
Query: 156 PAKKLHTARSRNDQVLTDFRLWCRD-AIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHL 214
P ++ ++S ND T + C + I ++ +++ L AL + + +I G TH
Sbjct: 162 PNDHVNXSQSSNDTYPTAXHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHT 221
Query: 215 QRAQPVLLQHLLLAYVEQLERDAGRLQDCRVRMNFCPLGACALAGTGL--PI-------D 265
Q A P+ L Y Q+ R++ + G A+ GTGL P+ +
Sbjct: 222 QDATPLTLGQEFSGYAAQVASSIKRIEXTLPGLCELAQGGTAV-GTGLNAPVGFAEKVAE 280
Query: 266 RFMTAEALEFT-APMRNSIDAVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS---EEF 321
+ FT AP N +A++ D + A + A L ++ + S
Sbjct: 281 EIAAITGIGFTSAP--NKFEALAAHDSXVFSHGAINATAAALFKIANDIRFLGSGPRSGL 338
Query: 322 GFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTL 363
G ++ ++ GSSI P K NP E + +V G+ L
Sbjct: 339 GELSLPEN-EPGSSIXPGKVNPTQCEALTQVCVQVFGNHAAL 379
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 88/226 (38%), Gaps = 35/226 (15%)
Query: 179 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 238
RD+ID I++ + L +LKN+ ++ G TH Q A V + + + ++L
Sbjct: 121 RDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLXAFQ 180
Query: 239 RLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSD-----RDFVL 293
L + R + F G GT D F+T A + ++A+ + +F
Sbjct: 181 SLSEFRDKXRF--RGIKGATGTQ---DSFLT-----LFAGDESKVEALDELVTKKANFSN 230
Query: 294 EFL--------SANSIIAIHLSRLG--------EEWVLWASEEFG-FITPSDSVSTGSSI 336
FL +S + LS LG + VL A FG + P + GSS
Sbjct: 231 RFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQA---FGELLEPFEKDQIGSSA 287
Query: 337 MPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQTGR 382
P KKNP E S ++I LT+ L D GR
Sbjct: 288 XPYKKNPXKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGR 333
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2
Length = 229
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 81 ISYDKALYKHDIMGSKAH--ASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138
+ +D + D+MG+ +LA +GL+ + ++ + EI R+I+AG+ +R D+
Sbjct: 109 MDFDAVVATPDVMGAVGSKLGRILAPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 168
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 224
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 81 ISYDKALYKHDIMGSKAH--ASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138
+ +D + D+MG+ +L +GL+ + ++ + EI R+I+AG+ +R D+
Sbjct: 104 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 163
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By
Cysteine
Length = 228
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 81 ISYDKALYKHDIMGSKAH--ASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138
+ +D + D+MG+ +L +GL+ + ++ + EI R+I+AG+ +R D+
Sbjct: 108 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 167
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2V47|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2OM7|K Chain K, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WDI|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|C Chain C, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|C Chain C, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|2X9S|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|2XQE|C Chain C, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|C Chain C, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|C Chain C, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|C Chain C, Ef-Tu Complex 3
pdb|2Y19|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 229
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 81 ISYDKALYKHDIMGSKAH--ASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138
+ +D + D+MG+ +L +GL+ + ++ + EI R+I+AG+ +R D+
Sbjct: 109 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 168
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus With
Threonine 217 Replaced By Valine
pdb|3U56|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217v Tthl1
In Complex With 80nt 23s Rna From Thermus Thermophilus
Length = 229
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 81 ISYDKALYKHDIMGSKAH--ASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138
+ +D + D+MG+ +L +GL+ + ++ + EI R+I+AG+ +R D+
Sbjct: 109 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 168
>pdb|1GIY|C Chain C, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|C Chain C, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4
Length = 228
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 81 ISYDKALYKHDIMGSKAH--ASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138
+ +D + D+MG+ +L +GL+ + ++ + EI R+I+AG+ +R D+
Sbjct: 108 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 167
>pdb|1EG0|N Chain N, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|C Chain C, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|A Chain A, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|1VSP|A Chain A, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3U4M|A Chain A, Crystal Structure Of Ribosomal Protein Tthl1 In Complex
With 80nt 23s Rna From Thermus Thermophilus
Length = 229
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 81 ISYDKALYKHDIMGSKAH--ASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138
+ +D + D+MG+ +L +GL+ + ++ + EI R+I+AG+ +R D+
Sbjct: 109 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 168
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With
Substitution Thr217ala
Length = 229
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 81 ISYDKALYKHDIMGSKAH--ASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138
+ +D + D+MG+ +L +GL+ + ++ + EI R+I+AG+ +R D+
Sbjct: 109 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 168
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|4ABS|C Chain C, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 229
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 81 ISYDKALYKHDIMGSKAH--ASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138
+ +D + D+MG+ +L +GL+ + ++ + EI R+I+AG+ +R D+
Sbjct: 109 MDFDAVVATPDVMGAVGSKMGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 168
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1
In Complex With 80nt 23s Rna From Thermus Thermophilus
Length = 228
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 81 ISYDKALYKHDIMGSKAH--ASMLAKQGLISDSDKNSILRGLDEIERQIEAGKFMWRTDR 138
+ +D + D+MG+ +L +GL+ + ++ + EI R+I+AG+ +R D+
Sbjct: 108 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 167
>pdb|1XDO|A Chain A, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDO|B Chain B, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDP|A Chain A, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
pdb|1XDP|B Chain B, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
Length = 687
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 237 AGRLQDCRVRMNFCPLGACALAGTGLPIDRFMTAEALEFTAPMRNSIDAVSDRDFVLEF 295
GR + + +NF +G L LP R + + +F RN DA+ +RD +L +
Sbjct: 290 GGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQF----RNGFDAIRERDVLLYY 344
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%)
Query: 133 MWRTDREDVHMNIEAALTDIIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTIVRSIQRL 192
++R +RE H + L + +H + ND + T + L R A+ + + +
Sbjct: 63 VYRLERETGHDILSLVLLLEQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAV 122
Query: 193 QVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQL 233
L +A K + L + G TH Q A+P+ L Y +L
Sbjct: 123 GDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYEL 163
>pdb|3F5F|A Chain A, Crystal Structure Of Heparan Sulfate 2-O-Sulfotransferase
From Gallus Gallus As A Maltose Binding Protein Fusion
Length = 658
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 15 FSPAAVLF--NQAATHSLRSSLSFNYTYSAEPKHKTVLCK-----MSASKEVKLWGGRFE 67
+ PA F N H L + +NYTY + K K+V + M+ + + +W F
Sbjct: 217 YLPAFKAFGANAKVVHFLGQTKPWNYTY--DTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
Query: 68 ESVTDAVEKFTESISYDKALYKH--DIMGSKAHASM 101
SV +++F + D Y+H D+ G+ +H S+
Sbjct: 275 TSVVPLLQQF--GLVQDTCSYQHVEDVSGAVSHLSL 308
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 15 FSPAAVLF--NQAATHSLRSSLSFNYTYSAEPKHKTVLCK-----MSASKEVKLWGGRFE 67
+ PA F N H L + +NYTY + K K+V + M+ + + +W F
Sbjct: 217 YLPAFKAFGANAKVVHFLGQTKPWNYTY--DTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
Query: 68 ESVTDAVEKFTESISYDKALYKH--DIMGSKAHASM 101
SV +++F + D Y+H D+ G+ +H S+
Sbjct: 275 TSVVPLLQQF--GLVQDTCSYQHVEDVSGAVSHLSL 308
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 15 FSPAAVLF--NQAATHSLRSSLSFNYTYSAEPKHKTVLCK-----MSASKEVKLWGGRFE 67
+ PA F N H L + +NYTY + K K+V + M+ + + +W F
Sbjct: 217 YLPAFKAFGANAKVVHFLGQTKPWNYTY--DTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
Query: 68 ESVTDAVEKFTESISYDKALYKH--DIMGSKAHASM 101
SV +++F + D Y+H D+ G+ +H S+
Sbjct: 275 TSVVPLLQQF--GLVQDTCSYQHVEDVSGAVSHLSL 308
>pdb|3MQ9|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
Length = 471
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 70 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 126
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 127 LSLIYNKDL 135
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 15 FSPAAVLF--NQAATHSLRSSLSFNYTYSAEPKHKTVLCK-----MSASKEVKLWGGRFE 67
+ PA F N H L + +NYTY + K K+V + M+ + + +W F
Sbjct: 197 YLPAFKAFGANAKVVHFLGQTKPWNYTY--DTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 254
Query: 68 ESVTDAVEKFTESISYDKALYKH--DIMGSKAHASM 101
SV +++F + D Y+H D+ G+ +H S+
Sbjct: 255 TSVVPLLQQF--GLVQDTCSYQHVEDVSGAVSHLSL 288
>pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure
pdb|1HSJ|B Chain B, Sarr Mbp Fusion Structure
Length = 487
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|2VGQ|A Chain A, Crystal Structure Of Human Ips-1 Card
Length = 477
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 71 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 127
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 128 LSLIYNKDL 136
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 15 FSPAAVLF--NQAATHSLRSSLSFNYTYSAEPKHKTVLCK-----MSASKEVKLWGGRFE 67
+ PA F N H L + +NYTY + K K+V + M+ + + +W F
Sbjct: 203 YLPAFKAFGANAKVVHFLGQTKPWNYTY--DTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 260
Query: 68 ESVTDAVEKFTESISYDKALYKH--DIMGSKAHASM 101
SV +++F + D Y+H D+ G+ +H S+
Sbjct: 261 TSVVPLLQQF--GLVQDTCSYQHVEDVSGAVSHLSL 294
>pdb|4B3N|A Chain A, Crystal Structure Of Rhesus Trim5alpha PrySPRY DOMAIN
pdb|4B3N|B Chain B, Crystal Structure Of Rhesus Trim5alpha PrySPRY DOMAIN
Length = 602
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 70 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 126
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 127 LSLIYNKDL 135
>pdb|3OSQ|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 175
Length = 661
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 92 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 148
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 149 LSLIYNKDL 157
>pdb|2XZ3|A Chain A, Blv Tm Hairpin
Length = 463
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding Protein Chimera
Length = 450
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 52 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 108
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 109 LSLIYNKDL 117
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|3OSR|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
pdb|3OSR|B Chain B, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
Length = 653
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 92 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 148
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 149 LSLIYNKDL 157
>pdb|3PUY|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUV|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
Length = 378
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 60 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 116
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 117 LSLIYNKDL 125
>pdb|4GLI|A Chain A, Crystal Structure Of Human Smn Yg-Dimer
Length = 401
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3G7V|A Chain A, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|B Chain B, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|C Chain C, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|D Chain D, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
Length = 408
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|3G7W|A Chain A, Islet Amyloid Polypeptide (Iapp Or Amylin) Residues 1 To
22 Fused To Maltose Binding Protein
Length = 393
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|3D4C|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
I)
pdb|3D4G|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|B Chain B, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|C Chain C, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|D Chain D, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|E Chain E, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|F Chain F, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|G Chain G, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|H Chain H, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3EF7|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Iii)
pdb|3EF7|B Chain B, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Iii)
Length = 481
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 114
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 115 LSLIYNKDL 123
>pdb|4DXB|A Chain A, 2.29a Structure Of The Engineered Mbp Tem-1 Fusion Protein
Rg13 In Complex With Zinc, P1 Space Group
pdb|4DXB|B Chain B, 2.29a Structure Of The Engineered Mbp Tem-1 Fusion Protein
Rg13 In Complex With Zinc, P1 Space Group
pdb|4DXC|A Chain A, Crystal Structure Of The Engineered Mbp Tem-1 Fusion
Protein Rg13, C2 Space Group
Length = 637
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3EHU|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
pdb|3EHU|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 114
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 115 LSLIYNKDL 123
>pdb|3OAI|A Chain A, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
pdb|3OAI|B Chain B, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
Length = 507
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3PUZ|E Chain E, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|E Chain E, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
Length = 370
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGCYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3IOR|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOR|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOR|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOT|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOT|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOT|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOU|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOU|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOU|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOV|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOV|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOV|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOW|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IOW|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IOW|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IO4|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO4|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO4|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO6|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
pdb|3IO6|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
pdb|3IO6|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
Length = 449
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|1JVX|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C
Cross-Linked In Crystal
Length = 372
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|2V93|A Chain A, Equillibrium Mixture Of Open And Partially-Closed Species
In The Apo State Of Maltodextrin-Binding Protein By
Paramagnetic Relaxation Enhancement Nmr
Length = 370
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3SEV|A Chain A, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
pdb|3SEV|C Chain C, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
pdb|3SEV|E Chain E, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
Length = 372
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|3SER|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein K26hK30H BY
SYNTHETIC Symmetrization
pdb|3SER|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein K26hK30H BY
SYNTHETIC Symmetrization
Length = 372
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|1MPB|A Chain A, Maltodextrin-Binding Protein (Maltose-Binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (Trp-230-Arg)
pdb|1MPC|A Chain A, Maltodextrin-binding Protein (maltose-binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (trp-230-arg)
pdb|1MPD|A Chain A, Maltodextrin-Binding Protein (Maltose-Binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (Trp-230-Arg), Complexed With Maltose
Length = 370
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3SES|A Chain A, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SES|C Chain C, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SET|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SET|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SEU|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Iii)
pdb|3SEW|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form I)
pdb|3SEX|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEX|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEY|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|E Chain E, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
Length = 372
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C With
Beta-Mercaptoethanol Mixed Disulfides
Length = 372
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|3LBS|A Chain A, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Bound Form)
pdb|3LBS|B Chain B, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Bound Form)
pdb|3LC8|A Chain A, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Free Form)
pdb|3LC8|B Chain B, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Free Form)
Length = 384
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
pdb|3L2J|B Chain B, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
Length = 535
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 54 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 110
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 111 LSLIYNKDL 119
>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3C4M|B Chain B, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3H3G|A Chain A, Crystal Structure Of The Extracellular Domain Of The Human
Parathyroid Hormone Receptor (Pth1r) In Complex With
Parathyroid Hormone-Related Protein (Pthrp)
Length = 539
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 114
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 115 LSLIYNKDL 123
>pdb|3RLF|E Chain E, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 380
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3N94|A Chain A, Crystal Structure Of Human Pituitary Adenylate Cyclase 1
Receptor- Short N-Terminal Extracellular Domain
Length = 475
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 114
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 115 LSLIYNKDL 123
>pdb|3Q25|A Chain A, Crystal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
pdb|3Q29|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
pdb|3Q29|C Chain C, Cyrstal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
Length = 390
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P2(1)crystal Form
pdb|1FQB|A Chain A, Structure Of Maltotriotol Bound To Open-Form Maltodextrin
Binding Protein In P2(1)crystal Form
pdb|1FQC|A Chain A, Crystal Structure Of Maltotriotol Bound To Closed-Form
Maltodextrin Binding Protein
pdb|1FQD|A Chain A, Crystal Structure Of Maltotetraitol Bound To Closed-Form
Maltodextrin Binding Protein
Length = 370
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3Q27|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (32-57) Fused
To Maltose Binding Protein (Mbp)
Length = 397
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|3PGF|A Chain A, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 398
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 87 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 143
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 144 LSLIYNKDL 152
>pdb|1EZ9|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1EZ9|B Chain B, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1JW4|A Chain A, Structure Of Ligand-Free Maltodextrin-Binding Protein
pdb|1JW5|A Chain A, Structure Of Maltose Bound To Open-Form Maltodextrin-
Binding Protein In P1 Crystal
pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose Binding Protein
With Xenon
pdb|2D21|A Chain A, Nmr Structure Of Stereo-Array Isotope Labelled (Sail)
Maltodextrin-Binding Protein (Mbp)
pdb|1ANF|A Chain A, Maltodextrin Binding Protein With Bound Maltose
pdb|1DMB|A Chain A, Refined 1.8 Angstroms Structure Reveals The Mechanism Of
Binding Of A Cyclic Sugar, Beta-Cyclodextrin, To The
Maltodextrin Binding Protein
pdb|1OMP|A Chain A, Crystallographic Evidence Of A Large Ligand-Induced Hinge-
Twist Motion Between The Two Domains Of The
Maltodextrin- Binding Protein Involved In Active
Transport And Chemotaxis
pdb|3MBP|A Chain A, Maltodextrin-Binding Protein With Bound Maltotriose
pdb|4MBP|A Chain A, Maltodextrin Binding Protein With Bound Maltetrose
pdb|2R6G|E Chain E, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 370
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|1N3W|A Chain A, Engineered High-affinity Maltose-binding Protein
pdb|1N3X|A Chain A, Ligand-Free High-Affinity Maltose-Binding Protein
Length = 366
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|1NL5|A Chain A, Engineered High-affinity Maltose-binding Protein
pdb|1PEB|A Chain A, Ligand-Free High-Affinity Maltose-Binding Protein
Length = 366
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|1YTV|A Chain A, Maltose-binding Protein Fusion To A C-terminal Fragment Of
The V1a Vasopressin Receptor
pdb|1YTV|B Chain B, Maltose-binding Protein Fusion To A C-terminal Fragment Of
The V1a Vasopressin Receptor
Length = 366
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|1EZP|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin Using Peptide Orientations From
Dipolar Couplings
pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin
pdb|2H25|A Chain A, Solution Structure Of Maltose Binding Protein Complexed
With Beta-Cyclodextrin
pdb|2KLF|A Chain A, Pere Nmr Structure Of Maltodextrin-Binding Protein
Length = 370
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND
C298S Mutant
Length = 451
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 54 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 110
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 111 LSLIYNKDL 119
>pdb|1MDQ|A Chain A, Refined Structures Of Two Insertion(slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
Length = 371
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3RUM|A Chain A, New Strategy To Analyze Structures Of Glycopeptide
Antibiotic-Target Complexes
pdb|3VFJ|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex With
Its Ligand, Using Mbp As A Ligand Carrier
Length = 378
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|3Q28|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (58-79) Fused
To Maltose Binding Protein (Mbp)
Length = 393
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM
IN Mitochondria, Solved As Mbp Fusion Protein
Length = 465
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3HST|A Chain A, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
pdb|3HST|C Chain C, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
Length = 387
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|2OK2|A Chain A, Muts C-Terminal Domain Fused To Maltose Binding Protein
pdb|2OK2|B Chain B, Muts C-Terminal Domain Fused To Maltose Binding Protein
Length = 402
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3Q26|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (10-42) Fused
To Maltose Binding Protein (Mbp)
Length = 404
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|1LAX|A Chain A, Crystal Structure Of Male31, A Defective Folding Mutant Of
Maltose-Binding Protein
pdb|1LAX|C Chain C, Crystal Structure Of Male31, A Defective Folding Mutant Of
Maltose-Binding Protein
Length = 370
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|1T0K|A Chain A, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex
Length = 381
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|B Chain B, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|C Chain C, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
Length = 389
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N93|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N95|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N96|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
Length = 482
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 114
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 115 LSLIYNKDL 123
>pdb|1NMU|A Chain A, Mbp-L30
pdb|1NMU|C Chain C, Mbp-L30
Length = 382
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|1MDP|1 Chain 1, Refined Structures Of Two Insertion(Slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
pdb|1MDP|2 Chain 2, Refined Structures Of Two Insertion(Slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
Length = 363
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|1Y4C|A Chain A, Designed Helical Protein Fusion Mbp
Length = 494
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 27/183 (14%)
Query: 179 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 238
R+A+D ++ + R+ L A + L G+TH Q AQ + +++ L D
Sbjct: 128 RNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQ 187
Query: 239 RLQDCRVRMNFCPLGACALAGTGLP--------------IDRFMTAEALEFTAPMRNSID 284
L+ RVR + G GT +D+ +T +A A +
Sbjct: 188 NLK--RVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-- 243
Query: 285 AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS----EEFGFITPSDSVSTGSSIMPQK 340
R +E LS + + + ++ + L A+ EE P + GSS MP K
Sbjct: 244 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEE-----PFEKQQIGSSAMPYK 298
Query: 341 KNP 343
+NP
Sbjct: 299 RNP 301
>pdb|1SVX|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 395
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 71 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 127
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 128 LSLIYNKDL 136
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 27/183 (14%)
Query: 179 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 238
R+A+D ++ + R+ L A + L G+TH Q AQ + +++ L D
Sbjct: 147 RNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQ 206
Query: 239 RLQDCRVRMNFCPLGACALAGTGLP--------------IDRFMTAEALEFTAPMRNSID 284
L+ RVR + G GT +D+ +T +A A +
Sbjct: 207 NLK--RVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-- 262
Query: 285 AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS----EEFGFITPSDSVSTGSSIMPQK 340
R +E LS + + + ++ + L A+ EE P + GSS MP K
Sbjct: 263 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEE-----PFEKQQIGSSAMPYK 317
Query: 341 KNP 343
+NP
Sbjct: 318 RNP 320
>pdb|1IUD|A Chain A, Maltodextrin-Binding Protein InsertionDELETION MUTANT WITH
An Inserted B-Cell Epitope From The Pres2 Region Of
Hepatitis B Virus
Length = 380
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 56 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 112
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 113 LSLIYNKDL 121
>pdb|3CSB|A Chain A, Crystal Structure Of Monobody Ysx1MALTOSE BINDING PROTEIN
Fusion Complex
Length = 465
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 54 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 110
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 111 LSLIYNKDL 119
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 27/183 (14%)
Query: 179 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 238
R+A+D ++ + R+ L A + L G+TH Q AQ + +++ L D
Sbjct: 128 RNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQ 187
Query: 239 RLQDCRVRMNFCPLGACALAGTGLP--------------IDRFMTAEALEFTAPMRNSID 284
L+ RVR + G GT +D+ +T +A A +
Sbjct: 188 NLK--RVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-- 243
Query: 285 AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS----EEFGFITPSDSVSTGSSIMPQK 340
R +E LS + + + ++ + L A+ EE P + GSS MP K
Sbjct: 244 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEE-----PFEKQQIGSSAMPYK 298
Query: 341 KNP 343
+NP
Sbjct: 299 RNP 301
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 27/183 (14%)
Query: 179 RDAIDTIVRSIQRLQVALVKLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQLERDAG 238
R+A+D ++ + R+ L A + L G+TH Q AQ + +++ L D
Sbjct: 147 RNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQ 206
Query: 239 RLQDCRVRMNFCPLGACALAGTGLP--------------IDRFMTAEALEFTAPMRNSID 284
L+ RVR + G GT +D+ +T +A A +
Sbjct: 207 NLK--RVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-- 262
Query: 285 AVSDRDFVLEFLSANSIIAIHLSRLGEEWVLWAS----EEFGFITPSDSVSTGSSIMPQK 340
R +E LS + + + ++ + L A+ EE P + GSS MP K
Sbjct: 263 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEE-----PFEKQQIGSSAMPYK 317
Query: 341 KNP 343
+NP
Sbjct: 318 RNP 320
>pdb|2OBG|A Chain A, Crystal Structure Of Monobody Mbp-74MALTOSE BINDING
PROTEIN FUSION Complex
Length = 461
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 54 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 110
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 111 LSLIYNKDL 119
>pdb|3CSG|A Chain A, Crystal Structure Of Monobody Ys1(Mbp-74)MALTOSE BINDING
Protein Fusion Complex
Length = 461
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 54 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 110
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 111 LSLIYNKDL 119
>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 58 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPETWDAVRYNGKLIAYPIAVEA 114
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 115 LSLIYNKDL 123
>pdb|3MP1|A Chain A, Complex Structure Of Sgf29 And Trimethylated H3k4
pdb|3MP6|A Chain A, Complex Structure Of Sgf29 And Dimethylated H3k4
pdb|3MP8|A Chain A, Crystal Structure Of Sgf29 Tudor Domain
Length = 522
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ I P K D + + R G L+ +
Sbjct: 57 GPDIIFWAHDRFGGYAQSGLLA---EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 113
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 114 LSLIYNKDL 122
>pdb|3JYR|A Chain A, Crystal Structures Of The Gach Receptor Of Streptomyces
Glaucescens Gla.O In The Unliganded Form And In Complex
With Acarbose And An Acarbose Homolog. Comparison With
Acarbose-Loaded Maltose Binding Protein Of Salmonella
Typhimurium
Length = 396
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 310 GEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKG 369
G + + WA + FG S ++ + P K D + + R G L+ +
Sbjct: 82 GPDIIFWAHDRFGGYAQSGLLA---EVTPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 138
Query: 370 LPLAYNRDL 378
L L YN+DL
Sbjct: 139 LSLIYNKDL 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,209,650
Number of Sequences: 62578
Number of extensions: 399589
Number of successful extensions: 1024
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 146
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)