Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>016802
MALKFHITNVNFHFCACSSSFSRSTLAFSSSKLSNCSQNRTNGLVAQSSLTDQQQLAFTG
EENQLIDALIGIQGRGRSASARQLNTGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFS
VFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFP
YPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQV
EQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMK
FEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKM
RISRGYNNILFVHLRTDGSNQK

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  016802
        (382 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2026052 - symbol:AT1G51110 species:3702 "Arabi...  1078  4.6e-120  2
TAIR|locus:2132006 - symbol:AT4G22240 species:3702 "Arabi...    99  5.3e-05   2


>TAIR|locus:2026052 [details] [associations]
            symbol:AT1G51110 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA;ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IEA;IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] InterPro:IPR006843
            Pfam:PF04755 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005198
            GO:GO:0009941 GO:GO:0009535 EMBL:AC079828 EMBL:AK118545
            EMBL:BT005347 EMBL:AY087688 IPI:IPI00538472 PIR:D96548 PIR:E96548
            RefSeq:NP_175522.2 UniGene:At.37891 STRING:Q8LAP6 PaxDb:Q8LAP6
            PRIDE:Q8LAP6 EnsemblPlants:AT1G51110.1 GeneID:841534
            KEGG:ath:AT1G51110 GeneFarm:2868 TAIR:At1g51110 eggNOG:NOG301249
            HOGENOM:HOG000005744 InParanoid:Q8LAP6 OMA:RISRGNK
            ProtClustDB:CLSN2680451 Genevestigator:Q8LAP6 Uniprot:Q8LAP6
        Length = 409

 Score = 1078 (384.5 bits), Expect = 4.6e-120, Sum P(2) = 4.6e-120
 Identities = 202/291 (69%), Positives = 245/291 (84%)

Query:    86 TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLR-TNDPRVSNIVKFSEAI 144
             T S LIEGRW+LMFTTRPGTASPIQRTF GV+ F+VFQ++ L+ TNDPRVSNIVKFS+ I
Sbjct:   117 TDSDLIEGRWRLMFTTRPGTASPIQRTFTGVDVFTVFQDVYLKATNDPRVSNIVKFSDFI 176

Query:   145 GELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPS 204
             GELKVEA ASIKDGKR+LF+FD+AAF  KFLPFK PYPVPFRLLGDEAKGWLDTTYLSPS
Sbjct:   177 GELKVEAVASIKDGKRVLFRFDRAAFDLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPS 236

Query:   205 GNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAXXXXXXXXX 264
             GNLRISRGNKGTTFVLQK+T PRQ LL+ IS    V +AI+EF++SN ++A         
Sbjct:   237 GNLRISRGNKGTTFVLQKETVPRQKLLATISQDKGVAEAIDEFLASNSNSAEDNYELLEG 296

Query:   265 XWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNT 324
              WQM+WSSQM TDSWIENA NGLMG+QI++K+G++KFEV+I+  F+FSM G + KS ++T
Sbjct:   297 SWQMIWSSQMYTDSWIENAANGLMGRQIIEKDGRIKFEVNIIPAFRFSMKGKFIKSESST 356

Query:   325 YNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLR 375
             Y++ MDDAAII G FGYP+ +   I L++LY+D+KMRISRG++NI+FVH+R
Sbjct:   357 YDLKMDDAAIIGGAFGYPVDITNNIELKILYTDEKMRISRGFDNIIFVHIR 407

 Score = 124 (48.7 bits), Expect = 4.6e-120, Sum P(2) = 4.6e-120
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query:    35 NCSQNRTNGLVAQSSLTDQ-QQLAFTGEENQLIDALIGIQGRGRSASARQLNTGSSLIE 92
             NC   R +   + S++TDQ QQ +F   E +LIDALIGIQGRG+SAS +QLN   S ++
Sbjct:    48 NCRTLRIS-CSSSSTVTDQTQQSSFNDAELKLIDALIGIQGRGKSASPKQLNDVESAVK 105


>TAIR|locus:2132006 [details] [associations]
            symbol:AT4G22240 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA;ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IEA;IDA] [GO:0031977 "thylakoid lumen"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0010287
            "plastoglobule" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] InterPro:IPR006843 Pfam:PF04755 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0005198 EMBL:AL161556 EMBL:AL021712
            GO:GO:0009535 GO:GO:0010287 GO:GO:0031977 eggNOG:NOG08027
            HOGENOM:HOG000030253 ProtClustDB:CLSN2719212 EMBL:AY074581
            EMBL:AY084549 EMBL:BT020429 EMBL:BT020480 IPI:IPI00536675
            PIR:T04905 RefSeq:NP_193955.1 UniGene:At.1973 IntAct:O49629
            STRING:O49629 PaxDb:O49629 PRIDE:O49629 ProMEX:O49629
            EnsemblPlants:AT4G22240.1 GeneID:828319 KEGG:ath:AT4G22240
            GeneFarm:2281 TAIR:At4g22240 InParanoid:O49629 OMA:AKLYNIA
            Genevestigator:O49629 GermOnline:AT4G22240 Uniprot:O49629
        Length = 310

 Score = 99 (39.9 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query:   182 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 226
             P+ F L  D A+ WL TTYL    ++RISRG+ G+ FVL K+  P
Sbjct:   264 PLKFSLPADNAQSWLLTTYLDK--DIRISRGDGGSVFVLIKEGSP 306

 Score = 65 (27.9 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 23/105 (21%), Positives = 45/105 (42%)

Query:    90 LIEGRWQLMFTTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIG--E 146
             L+ G+W L +T+       + R  V  ++   + Q I   +++  V N V+F+  +G   
Sbjct:   133 LLNGKWILAYTSFVNLFPLLSRGIVPLIKVDEISQTID--SDNFTVQNSVRFAGPLGTNS 190

Query:   147 LKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDE 191
             +   A   I+  KR+  +F++       L      P    +LG +
Sbjct:   191 ISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQK 235


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      382       352   0.00078  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  218 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.68u 0.11s 25.79t   Elapsed:  00:00:01
  Total cpu time:  25.68u 0.11s 25.79t   Elapsed:  00:00:01
  Start:  Tue May 21 01:19:08 2013   End:  Tue May 21 01:19:09 2013

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