BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016802
         (382 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IL4|A Chain A, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
 pdb|3IL4|B Chain B, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
 pdb|3IL4|C Chain C, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
 pdb|3IL4|D Chain D, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
          Length = 320

 Score = 28.1 bits (61), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 288 MGKQIVKKNGQMKFEVDILL------GFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGY 341
           + KQ+++K+G+   E+D +L       F         + +         D +  C GF Y
Sbjct: 58  VAKQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQGAIGATEAFAFDISAACSGFVY 117

Query: 342 PIKMETKINLQLLY 355
            + M  K+ L   Y
Sbjct: 118 ALSMAEKLVLSGRY 131


>pdb|3IL5|A Chain A, Structure Of E. Faecalis Fabh In Complex With
           2-({4-Bromo-3-
           [(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
 pdb|3IL5|B Chain B, Structure Of E. Faecalis Fabh In Complex With
           2-({4-Bromo-3-
           [(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
 pdb|3IL5|C Chain C, Structure Of E. Faecalis Fabh In Complex With
           2-({4-Bromo-3-
           [(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
 pdb|3IL5|D Chain D, Structure Of E. Faecalis Fabh In Complex With
           2-({4-Bromo-3-
           [(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
          Length = 343

 Score = 28.1 bits (61), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 288 MGKQIVKKNGQMKFEVDILL------GFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGY 341
           + KQ+++K+G+   E+D +L       F         + +         D +  C GF Y
Sbjct: 79  VAKQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQGAIGATEAFAFDISAACSGFVY 138

Query: 342 PIKMETKINLQLLY 355
            + M  K+ L   Y
Sbjct: 139 ALSMAEKLVLSGRY 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,837,472
Number of Sequences: 62578
Number of extensions: 375123
Number of successful extensions: 926
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 926
Number of HSP's gapped (non-prelim): 4
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)