BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016802
(382 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic
OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1
Length = 409
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/408 (59%), Positives = 306/408 (75%), Gaps = 35/408 (8%)
Query: 1 MALKFHITNVNFHFCACSSSFSRSTLAFSSSKLS-------------NCSQNRTNGLVAQ 47
+A++F+ ++ C C S +L+ S + + NC R + +
Sbjct: 2 VAVRFYAVEMSLP-CLCPCPSSPISLSLCSPRFNLLNTTSRRLGLSRNCRTLRIS-CSSS 59
Query: 48 SSLTDQ-QQLAFTGEENQLIDALIGIQGRGRSASARQLN------------------TGS 88
S++TDQ QQ +F E +LIDALIGIQGRG+SAS +QLN T S
Sbjct: 60 STVTDQTQQSSFNDAELKLIDALIGIQGRGKSASPKQLNDVESAVKVLEGLEGIQNPTDS 119
Query: 89 SLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLR-TNDPRVSNIVKFSEAIGEL 147
LIEGRW+LMFTTRPGTASPIQRTF GV+ F+VFQ++ L+ TNDPRVSNIVKFS+ IGEL
Sbjct: 120 DLIEGRWRLMFTTRPGTASPIQRTFTGVDVFTVFQDVYLKATNDPRVSNIVKFSDFIGEL 179
Query: 148 KVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNL 207
KVEA ASIKDGKR+LF+FD+AAF KFLPFK PYPVPFRLLGDEAKGWLDTTYLSPSGNL
Sbjct: 180 KVEAVASIKDGKRVLFRFDRAAFDLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPSGNL 239
Query: 208 RISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEGEWQ 267
RISRGNKGTTFVLQK+T PRQ LL+ IS V +AI+EF++SN ++AE+ ELLEG WQ
Sbjct: 240 RISRGNKGTTFVLQKETVPRQKLLATISQDKGVAEAIDEFLASNSNSAEDNYELLEGSWQ 299
Query: 268 MLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNV 327
M+WSSQM TDSWIENA NGLMG+QI++K+G++KFEV+I+ F+FSM G + KS ++TY++
Sbjct: 300 MIWSSQMYTDSWIENAANGLMGRQIIEKDGRIKFEVNIIPAFRFSMKGKFIKSESSTYDL 359
Query: 328 TMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLR 375
MDDAAII G FGYP+ + I L++LY+D+KMRISRG++NI+FVH+R
Sbjct: 360 KMDDAAIIGGAFGYPVDITNNIELKILYTDEKMRISRGFDNIIFVHIR 407
>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica
campestris GN=PAP2 PE=1 SV=1
Length = 319
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 182 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 226
P+ F L GD A+ WL TTYL ++RISRG+ G+ FVL K+ P
Sbjct: 273 PLKFSLPGDSAQSWLLTTYL--DKDIRISRGDGGSVFVLIKEGSP 315
>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic
OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1
Length = 310
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 182 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 226
P+ F L D A+ WL TTYL ++RISRG+ G+ FVL K+ P
Sbjct: 264 PLKFSLPADNAQSWLLTTYL--DKDIRISRGDGGSVFVLIKEGSP 306
>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica
campestris GN=PAP1 PE=1 SV=1
Length = 327
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 182 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 223
P+ F L GD A+ WL TTYL +LRISRG+ G+ FVL ++
Sbjct: 281 PLKFSLPGDSAQSWLLTTYL--DKDLRISRGDGGSVFVLIRE 320
>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2
Length = 326
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 182 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 226
P+ F + + A+ WL TTYL LRISRG+ G+ FVL K+ P
Sbjct: 280 PIKFPITNNNAQSWLLTTYLD--DELRISRGDAGSVFVLIKEGSP 322
>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1
Length = 326
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 182 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 226
P+ F + + A+ WL TTYL LRI RG+ G+ FVL K+ P
Sbjct: 280 PIKFPITNNNAQSWLLTTYL--DDELRIPRGDAGSVFVLIKEGSP 322
>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic
OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1
Length = 318
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 182 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 223
P+ F L D + WL TTYL +LRISRG+ G+ +VL K+
Sbjct: 272 PLKFSLPSDNTQSWLLTTYL--DKDLRISRGDGGSVYVLIKE 311
>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic
OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1
Length = 242
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 25/137 (18%)
Query: 88 SSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVK---FSEAI 144
S L+ G+W+L++TT + F+ + + +Q I++ T +V N+ ++
Sbjct: 118 SDLVNGKWELIYTTSASILQAKKPRFL--RSITNYQSINVDTL--KVQNMETWPFYNSVT 173
Query: 145 GELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPS 204
G++K + + + Q K F+P K P D A+G L+ TY+
Sbjct: 174 GDIKPLNSKKVA----VKLQVFKI---LGFIPIKAP---------DSARGELEITYVD-- 215
Query: 205 GNLRISRGNKGTTFVLQ 221
LR+SRG+KG F+L+
Sbjct: 216 EELRLSRGDKGNLFILK 232
>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast
OS=Cucumis sativus GN=CHRC PE=1 SV=1
Length = 322
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 182 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 223
P+ F + + WL TTYL +LRISRG+ G+ FVL K+
Sbjct: 276 PIKFSISNTRVESWLLTTYLD--EDLRISRGDGGSVFVLLKE 315
>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu
GN=PAP PE=2 SV=1
Length = 323
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 182 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 226
P+ F + A+ WL TTYL +LRISR + G+ FV K+ P
Sbjct: 277 PLKFSISNSNAQSWLLTTYL--DEDLRISRADAGSVFVFIKEGSP 319
>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=PAP2 PE=2 SV=1
Length = 319
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 68/181 (37%), Gaps = 54/181 (29%)
Query: 89 SLIEGRWQLMFTTR----PGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAI 144
+L+ G+W L +T+ P S V VE S ++ + + V N +KFS +
Sbjct: 141 TLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQ----TIDSENFTVQNCIKFSGPL 196
Query: 145 GELKVEAAA--SIKDGKRILFQFDKAAFSFK------FLPFKF----------------- 179
V A ++ KR+ +FD+ LP KF
Sbjct: 197 ATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFS 256
Query: 180 -----------------PYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQK 222
P +P R D A+ WL TTYL LRISRG+ + FVL K
Sbjct: 257 SIENAASSVARTISGQPPLKIPIRT--DNAESWLLTTYL--DDELRISRGDGSSIFVLFK 312
Query: 223 K 223
+
Sbjct: 313 E 313
>sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chloroplastic OS=Brassica
campestris GN=PAP3 PE=2 SV=1
Length = 360
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 176 PFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 223
P K P+P G+ WL TTYL +LRISRG+ G FVL ++
Sbjct: 315 PLKLPFP------GNRGSSWLLTTYL--DKDLRISRGDGG-LFVLARE 353
>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic
OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1
Length = 376
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 176 PFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 223
P K P+P G+ WL TTYL +LRISRG+ G FVL ++
Sbjct: 331 PLKLPFP------GNRGSSWLLTTYL--DKDLRISRGDGG-LFVLARE 369
>sp|Q4AAR2|KCY_MYCHJ Cytidylate kinase OS=Mycoplasma hyopneumoniae (strain J / ATCC
25934 / NCTC 10110) GN=cmk PE=3 SV=1
Length = 229
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 27/153 (17%)
Query: 234 ISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAG-NGLMGKQI 292
I+TG+ + +AI F NQ + ER++++ S E + W++N + L+ +
Sbjct: 34 INTGS-LYRAIAFFCQKNQISITSERKMIKHLPPNFLSLDFEGNVWLQNQNVSNLLRNDL 92
Query: 293 VKKNGQM--------KFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIK 344
+ KN + K +IL F+ + G + TYNV M DA
Sbjct: 93 ISKNAAIIAQYPQIRKIVTEILQNFQKNHKGIIMEGRDTTYNV-MPDA------------ 139
Query: 345 METKINLQLLYSDDKMRISRGYNNILFVHLRTD 377
+ KI L++D + R R F++L TD
Sbjct: 140 -DLKI---FLWADAETRAKRRLKQNTFLNLETD 168
>sp|Q4A8U3|KCY_MYCH7 Cytidylate kinase OS=Mycoplasma hyopneumoniae (strain 7448) GN=cmk
PE=3 SV=1
Length = 229
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 27/153 (17%)
Query: 234 ISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAG-NGLMGKQI 292
I+TG+ + +AI F NQ + ER++++ S E + W++N + L+ +
Sbjct: 34 INTGS-LYRAIAFFCQKNQISITSERKMIKHLPPNFLSLDFEGNVWLQNQNVSNLLRNDL 92
Query: 293 VKKNGQM--------KFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIK 344
+ KN + K +IL F+ + G + TYNV M DA
Sbjct: 93 ISKNAAIIAQYPQIRKIVTEILQNFQKNHKGIIMEGRDTTYNV-MPDA------------ 139
Query: 345 METKINLQLLYSDDKMRISRGYNNILFVHLRTD 377
+ KI L++D + R R F++L TD
Sbjct: 140 -DLKI---FLWADAETRAKRRLKQNTFLNLETD 168
>sp|Q601X7|KCY_MYCH2 Cytidylate kinase OS=Mycoplasma hyopneumoniae (strain 232) GN=cmk
PE=3 SV=1
Length = 229
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 27/153 (17%)
Query: 234 ISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAG-NGLMGKQI 292
I+TG+ + +AI F NQ + ER++++ S E + W++N + L+ +
Sbjct: 34 INTGS-LYRAIAFFCQKNQISITSERKMIKHLPPNFLSLDFEGNVWLQNQNVSNLLRNDL 92
Query: 293 VKKNGQM--------KFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIK 344
+ KN + K +IL F+ + G + TYNV M DA
Sbjct: 93 ISKNAAIIAQYPQIRKIVTEILQSFQKNHKGIIMEGRDTTYNV-MPDA------------ 139
Query: 345 METKINLQLLYSDDKMRISRGYNNILFVHLRTD 377
+ KI L++D + R R F++L TD
Sbjct: 140 -DLKI---FLWADAETRAKRRLKQNTFLNLETD 168
>sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1
Length = 358
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 176 PFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 223
P K P P G+ WL TTYL +LRISRG+ G FVL ++
Sbjct: 313 PLKIPIP------GERTSSWLITTYL--DKDLRISRGDGG-LFVLARE 351
>sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5, chloroplastic
OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1
Length = 234
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 240 VEQAINEFISSNQSTAEEERELLEGEWQMLWSS-----QMETDSWIENAGNGLMGKQIVK 294
++Q + + N + + +L+ G+W++++++ Q + ++ + N Q +
Sbjct: 90 IDQLARKVEAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLRSLTN----YQCIN 145
Query: 295 KNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKME---TKINL 351
+ +K + F S+TG ++ T V + I+ GF P+K + L
Sbjct: 146 MD-TLKVQRMETWPFYNSVTGDLTPLNSKTVAVKLQVFKIL--GF-IPVKAPDGTARGEL 201
Query: 352 QLLYSDDKMRISRGYNNILFV 372
++ Y D+++RISRG N+LF+
Sbjct: 202 EITYVDEELRISRGKGNLLFI 222
>sp|Q941D3|PAP8_ARATH Probable plastid-lipid-associated protein 8, chloroplastic
OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1
Length = 239
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 312 SMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILF 371
S+TG + V + I G + E+++ L++ Y D+K+R+ G LF
Sbjct: 174 SLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLF 233
Query: 372 VHLR 375
V R
Sbjct: 234 VFRR 237
>sp|Q92616|GCN1L_HUMAN Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6
Length = 2671
Score = 32.3 bits (72), Expect = 6.6, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%)
Query: 49 SLTDQQQLA------FTGEENQLIDALIGIQGRGRSASARQLNT-----GSSLIEGRWQL 97
SLTDQ+ LA G + L+D + + R+ SA+ L G S E
Sbjct: 1644 SLTDQKDLAPYLPSVTPGLKASLLDPVPEV----RTVSAKALGAMVKGMGESCFEDLLPW 1699
Query: 98 MFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKD 157
+ T S + R+ V + + + + IV + KV+ A ++D
Sbjct: 1700 LMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATAS-----KVDIAPHVRD 1754
Query: 158 GKRILFQFDKAAFSFKFLPFKFP-YPVPFRLLGDEAKGWLDT 198
G ++F + F KF P+ P P + L DE + DT
Sbjct: 1755 GYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDT 1796
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,010,394
Number of Sequences: 539616
Number of extensions: 5250209
Number of successful extensions: 14044
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 14016
Number of HSP's gapped (non-prelim): 39
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)