Query 016802
Match_columns 382
No_of_seqs 249 out of 497
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 8.1E-33 1.7E-37 254.0 18.7 158 59-221 1-198 (198)
2 PF04755 PAP_fibrillin: PAP_fi 100.0 3.1E-31 6.8E-36 243.5 16.9 150 225-374 2-198 (198)
3 PF14869 DUF4488: Domain of un 66.2 77 0.0017 28.2 9.9 67 262-331 3-71 (133)
4 cd06398 PB1_Joka2 The PB1 doma 56.8 18 0.00038 29.9 4.1 13 192-204 42-54 (91)
5 PF08212 Lipocalin_2: Lipocali 52.2 1.6E+02 0.0034 25.5 10.0 51 192-251 81-132 (143)
6 cd06407 PB1_NLP A PB1 domain i 45.8 41 0.00088 27.2 4.5 13 193-205 38-50 (82)
7 PF14869 DUF4488: Domain of un 44.2 2.3E+02 0.0051 25.2 10.9 67 91-167 3-71 (133)
8 COG3040 Blc Bacterial lipocali 44.2 76 0.0017 29.4 6.5 33 349-381 111-146 (174)
9 TIGR03422 mito_frataxin fratax 38.3 37 0.00079 28.4 3.2 23 215-237 45-68 (97)
10 PF07070 Spo0M: SpoOM protein; 37.5 2.5E+02 0.0054 26.9 9.1 56 147-203 50-117 (218)
11 cd06396 PB1_NBR1 The PB1 domai 33.3 58 0.0013 26.5 3.5 11 195-205 39-49 (81)
12 PF08212 Lipocalin_2: Lipocali 28.8 3.8E+02 0.0083 23.1 9.8 34 347-380 81-117 (143)
13 cd06397 PB1_UP1 Uncharacterize 28.5 43 0.00093 27.4 2.0 11 196-206 40-50 (82)
14 PF13596 PAS_10: PAS domain; P 25.3 91 0.002 24.9 3.5 70 197-269 11-83 (106)
15 COG3040 Blc Bacterial lipocali 24.6 3.7E+02 0.008 25.0 7.5 37 194-230 111-148 (174)
16 COG2088 SpoVG Uncharacterized 23.4 1.8E+02 0.0038 24.3 4.7 50 200-252 29-85 (95)
17 PHA02773 hypothetical protein; 20.9 73 0.0016 26.7 2.0 36 194-229 31-67 (112)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=8.1e-33 Score=254.02 Aligned_cols=158 Identities=40% Similarity=0.677 Sum_probs=133.8
Q ss_pred hHHHHHHHHHhcccCCCccccChhhhc------------------cCC-CcccceEEEEEecCCCCCCcccc-cccCcee
Q 016802 59 TGEENQLIDALIGIQGRGRSASARQLN------------------TGS-SLIEGRWQLMFTTRPGTASPIQR-TFVGVET 118 (382)
Q Consensus 59 ~~~K~~LL~ai~g~~~RG~~as~e~~~------------------~~~-~lL~G~W~LiYTS~~~~~sp~~~-~~~gl~~ 118 (382)
+++|++||++++++ +||+.+++++++ .++ ++|+|+|+|+|||+++..++++. ..+++..
T Consensus 1 ~~~K~~Ll~~~~~~-~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~ 79 (198)
T PF04755_consen 1 QDLKQELLQAVAGT-NRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRV 79 (198)
T ss_pred ChHHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccccccc
Confidence 47999999999999 999999999986 334 89999999999999998877664 4567888
Q ss_pred eeeEEEEEeeCCCCcEEEEEEeec---cceEEEEEEEEEEeCCcEEEEEEEeeEeeeccc-----------------ccc
Q 016802 119 FSVFQEISLRTNDPRVSNIVKFSE---AIGELKVEAAASIKDGKRILFQFDKAAFSFKFL-----------------PFK 178 (382)
Q Consensus 119 ~~i~Q~I~id~~~~~v~NvV~f~~---~~g~l~V~A~~~v~~~~rv~V~F~~~~v~~~~~-----------------~~~ 178 (382)
++|||.| |.+++++.|+|+|.. ..|.+.+.|.+++.+++|+.|+|+++.+.++.. ...
T Consensus 80 ~~v~Q~i--d~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~ 157 (198)
T PF04755_consen 80 GRVFQTI--DADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGIS 157 (198)
T ss_pred cceEEEE--ECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccc
Confidence 9999999 889999999999776 367899999999999999999999999865210 112
Q ss_pred cCCCccccccCCCcceEEEEEEecCCCceEEEeCCCCcEEEEe
Q 016802 179 FPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQ 221 (382)
Q Consensus 179 ~P~p~~f~l~~~~~~Gwld~TYLDe~~dlRIsRG~kG~vFVl~ 221 (382)
..+|+++++.+..++|||||||||| ||||+||++|++|||.
T Consensus 158 ~~~~~~~~~~~~~~~g~l~~tYLDe--dlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 158 DELPVPLPLPGGSPKGWLDTTYLDE--DLRISRGNKGSLFVLK 198 (198)
T ss_pred cccccccccCCCCCceEEEEEEECC--CeEEEEcCCCCEEEeC
Confidence 2345556666678999999999999 9999999999999984
No 2
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=99.97 E-value=3.1e-31 Score=243.47 Aligned_cols=150 Identities=24% Similarity=0.348 Sum_probs=122.5
Q ss_pred CccchhhhcccC-----------chHHHHHHHHHHHcCCCCCcccc-cccceeEEEEEecccCcchhhhhh-cCCCC---
Q 016802 225 EPRQTLLSAIST-----------GTQVEQAINEFISSNQSTAEEER-ELLEGEWQMLWSSQMETDSWIENA-GNGLM--- 288 (382)
Q Consensus 225 ~~~q~ll~~i~~-----------~~~I~~~i~eLea~np~~~P~~~-~lL~G~W~L~ySS~~e~~~~l~~~-~~gl~--- 288 (382)
+.+|+|+++++. ..+|.++|++||++||++.|.++ ++|+|+|+|+|||+.+..+.++.- ..+..
T Consensus 2 ~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~~ 81 (198)
T PF04755_consen 2 DLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVGR 81 (198)
T ss_pred hHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccccccccc
Confidence 457888888885 24899999999999999999865 999999999999999887666531 12222
Q ss_pred CeeEEc-cCCceEEEEEecC--C--eEEEEEEEEEEeCCcEEEEEEeecEEEe-------------------------cc
Q 016802 289 GKQIVK-KNGQMKFEVDILL--G--FKFSMTGTYAKSSTNTYNVTMDDAAIIC-------------------------GG 338 (382)
Q Consensus 289 ~~Q~Id-~~~~~~N~v~~~~--~--~~~~v~a~~e~~s~~rv~V~F~~~~i~~-------------------------g~ 338 (382)
.||+|| +++++.|+|++.+ . +.+.+.|++++.+++|+.|+|+++.+.. .+
T Consensus 82 v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~~~~ 161 (198)
T PF04755_consen 82 VFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISDELP 161 (198)
T ss_pred eEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccccccc
Confidence 399999 8999999999743 2 5778999999999999999999998843 12
Q ss_pred ceecCC-CCceeEEEEEEeeCceeEEeCCCCeEEEEE
Q 016802 339 FGYPIK-METKINLQLLYSDDKMRISRGYNNILFVHL 374 (382)
Q Consensus 339 ~~~p~~-~~~~gwLeitYLDe~lRI~RG~~GslFVl~ 374 (382)
++++++ ..++||||||||||+|||+||++|++|||.
T Consensus 162 ~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 162 VPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK 198 (198)
T ss_pred cccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence 223333 357899999999999999999999999983
No 3
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=66.18 E-value=77 Score=28.20 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=42.6
Q ss_pred cceeEEEE-EecccCcchhhhhhcCCCCCeeEEccCCceEEEEEec-CCeEEEEEEEEEEeCCcEEEEEEee
Q 016802 262 LEGEWQML-WSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDIL-LGFKFSMTGTYAKSSTNTYNVTMDD 331 (382)
Q Consensus 262 L~G~W~L~-ySS~~e~~~~l~~~~~gl~~~Q~Id~~~~~~N~v~~~-~~~~~~v~a~~e~~s~~rv~V~F~~ 331 (382)
|.|.|||. |-++....+---+. ...+-+|-.++++.|+.-+. .+......++++..++..+.=..++
T Consensus 3 l~GVWQ~c~~~~~~~~~~g~l~~---~~~lKilS~Dgtf~Ni~~~~~~~aiIt~~GtY~~~sD~~Y~E~IeK 71 (133)
T PF14869_consen 3 LQGVWQLCHYVSESPEVPGKLKP---SNVLKILSDDGTFVNITMIPKSGAIITGYGTYEQPSDNIYVESIEK 71 (133)
T ss_pred ceEEEEEEEEeecCcccCceEee---cccEEEEcCCCcEEEEEEeCCCCcEEEEeEEEEEcCCccceeeecc
Confidence 78999998 66654422211111 11277888999999997754 2334567889999887754444443
No 4
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=56.84 E-value=18 Score=29.91 Aligned_cols=13 Identities=23% Similarity=0.228 Sum_probs=10.3
Q ss_pred cceEEEEEEecCC
Q 016802 192 AKGWLDTTYLSPS 204 (382)
Q Consensus 192 ~~Gwld~TYLDe~ 204 (382)
+...+.+.|.|++
T Consensus 42 ~~~~~~l~Y~Ded 54 (91)
T cd06398 42 PDADLSLTYTDED 54 (91)
T ss_pred CCCcEEEEEECCC
Confidence 4477789999994
No 5
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=52.17 E-value=1.6e+02 Score=25.54 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=35.0
Q ss_pred cceEEEEEEecCCC-ceEEEeCCCCcEEEEeecCCccchhhhcccCchHHHHHHHHHHHcC
Q 016802 192 AKGWLDTTYLSPSG-NLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSN 251 (382)
Q Consensus 192 ~~Gwld~TYLDe~~-dlRIsRG~kG~vFVl~R~~~~~q~ll~~i~~~~~I~~~i~eLea~n 251 (382)
..|-..+.|+|.+- -.=++-.++-.+|||.|...+.+.. +.++++.+++..
T Consensus 81 ~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~~~~~~---------~~~~~~~~~~~G 132 (143)
T PF08212_consen 81 PKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQLSEET---------YAEILDRAKQQG 132 (143)
T ss_dssp EEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS--HHH---------HHHHHHHHHHTT
T ss_pred CCcceEEEEEcCCccEEEEecCCCCEEEEEeCCCCCCHHH---------HHHHHHHHHHcC
Confidence 56788899999821 1556667888999999998876652 555566665554
No 6
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=45.85 E-value=41 Score=27.18 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=10.6
Q ss_pred ceEEEEEEecCCC
Q 016802 193 KGWLDTTYLSPSG 205 (382)
Q Consensus 193 ~Gwld~TYLDe~~ 205 (382)
.+-+.+.|+||+|
T Consensus 38 ~~~f~LkY~Ddeg 50 (82)
T cd06407 38 MSAFDLKYLDDDE 50 (82)
T ss_pred CCeeEEEEECCCC
Confidence 3789999999943
No 7
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=44.21 E-value=2.3e+02 Score=25.21 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=41.5
Q ss_pred ccceEEEE-EecCCCCCCcccccccC-ceeeeeEEEEEeeCCCCcEEEEEEeeccceEEEEEEEEEEeCCcEEEEEEEe
Q 016802 91 IEGRWQLM-FTTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDK 167 (382)
Q Consensus 91 L~G~W~Li-YTS~~~~~sp~~~~~~g-l~~~~i~Q~I~id~~~~~v~NvV~f~~~~g~l~V~A~~~v~~~~rv~V~F~~ 167 (382)
|.|-|+|+ |-+.... .+| +.-.+++..+ .++|+..|+.-+......+...++++..++....=.-++
T Consensus 3 l~GVWQ~c~~~~~~~~-------~~g~l~~~~~lKil---S~Dgtf~Ni~~~~~~~aiIt~~GtY~~~sD~~Y~E~IeK 71 (133)
T PF14869_consen 3 LQGVWQLCHYVSESPE-------VPGKLKPSNVLKIL---SDDGTFVNITMIPKSGAIITGYGTYEQPSDNIYVESIEK 71 (133)
T ss_pred ceEEEEEEEEeecCcc-------cCceEeecccEEEE---cCCCcEEEEEEeCCCCcEEEEeEEEEEcCCccceeeecc
Confidence 78999999 5554321 111 1222344444 378999999886655556777788888777644433333
No 8
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=44.16 E-value=76 Score=29.43 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=28.7
Q ss_pred eEEEEEEeeCcee---EEeCCCCeEEEEEecCCCCC
Q 016802 349 INLQLLYSDDKMR---ISRGYNNILFVHLRTDGSNQ 381 (382)
Q Consensus 349 gwLeitYLDe~lR---I~RG~~GslFVl~R~~~~~~ 381 (382)
|=-.++|+|++-+ ++-.|+-.+|+|.|.+++.|
T Consensus 111 g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRtP~~s~ 146 (174)
T COG3040 111 GDYWVLALDPEYSWAIVGSPDREYLWLLSRTPTLSQ 146 (174)
T ss_pred ccEEEEEECCCccEEEEeCCCcceEEEEecCCCCCH
Confidence 6678999999988 67889999999999987665
No 9
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=38.30 E-value=37 Score=28.43 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.9
Q ss_pred CcEEEEeecCCccchhhhc-ccCc
Q 016802 215 GTTFVLQKKTEPRQTLLSA-ISTG 237 (382)
Q Consensus 215 G~vFVl~R~~~~~q~ll~~-i~~~ 237 (382)
|+.||+-|..+.+|-||.+ ++.+
T Consensus 45 ~~~~VINkQ~p~~QIWlsSp~sGp 68 (97)
T TIGR03422 45 VGTYVINKQPPNKQIWLSSPVSGP 68 (97)
T ss_pred CCEEEEeCCChhhHHheecCCCCC
Confidence 7799999999999999998 5543
No 10
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=37.48 E-value=2.5e+02 Score=26.91 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=32.7
Q ss_pred EEEEEEEEEeCC---cEEEEEEEeeEeeec---------ccccccCCCccccccCCCcceEEEEEEecC
Q 016802 147 LKVEAAASIKDG---KRILFQFDKAAFSFK---------FLPFKFPYPVPFRLLGDEAKGWLDTTYLSP 203 (382)
Q Consensus 147 l~V~A~~~v~~~---~rv~V~F~~~~v~~~---------~~~~~~P~p~~f~l~~~~~~Gwld~TYLDe 203 (382)
+.+.+.++..++ .+..+.|.+..+..+ -.||.+|+|...++-.+...-|+. |-||=
T Consensus 50 l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f~I~~ge~~~iPF~~~lP~etPiT~~~~~v~l~-T~LdI 117 (218)
T PF07070_consen 50 LELVTRYEVESDDKEYTQEVELARVRVSGPFTIEPGEEKEIPFSFPLPWETPITEGGMRVWLR-TGLDI 117 (218)
T ss_pred EEEEEEEEEecCCCeEEEEEEEEEEEeCCCEEECCCCEEEEeEEEECCCCCCccCCCcEEEEE-EEEEe
Confidence 455566666432 256777887776543 257777666444444445677874 45553
No 11
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=33.33 E-value=58 Score=26.52 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=9.3
Q ss_pred EEEEEEecCCC
Q 016802 195 WLDTTYLSPSG 205 (382)
Q Consensus 195 wld~TYLDe~~ 205 (382)
.+++.|+||+|
T Consensus 39 ~f~lKYlDde~ 49 (81)
T cd06396 39 DIQIKYVDEEN 49 (81)
T ss_pred cceeEEEcCCC
Confidence 78999999953
No 12
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=28.81 E-value=3.8e+02 Score=23.10 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=26.1
Q ss_pred ceeEEEEEEeeCc---eeEEeCCCCeEEEEEecCCCC
Q 016802 347 TKINLQLLYSDDK---MRISRGYNNILFVHLRTDGSN 380 (382)
Q Consensus 347 ~~gwLeitYLDe~---lRI~RG~~GslFVl~R~~~~~ 380 (382)
..+--.|+|+|.+ .=+|-.++-.+|||.|++.+.
T Consensus 81 ~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~~~ 117 (143)
T PF08212_consen 81 PKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQLS 117 (143)
T ss_dssp EEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS--
T ss_pred CCcceEEEEEcCCccEEEEecCCCCEEEEEeCCCCCC
Confidence 4567788999987 346788899999999998753
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=28.47 E-value=43 Score=27.36 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=9.0
Q ss_pred EEEEEecCCCc
Q 016802 196 LDTTYLSPSGN 206 (382)
Q Consensus 196 ld~TYLDe~~d 206 (382)
+-+||+|+|||
T Consensus 40 ~~vtYiDeD~D 50 (82)
T cd06397 40 VGVTYIDNDND 50 (82)
T ss_pred eEEEEEcCCCC
Confidence 78999999543
No 14
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=25.35 E-value=91 Score=24.95 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=38.5
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEeecCCccchhhhcccCch---HHHHHHHHHHHcCCCCCcccccccceeEEEE
Q 016802 197 DTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGT---QVEQAINEFISSNQSTAEEERELLEGEWQML 269 (382)
Q Consensus 197 d~TYLDe~~dlRIsRG~kG~vFVl~R~~~~~q~ll~~i~~~~---~I~~~i~eLea~np~~~P~~~~lL~G~W~L~ 269 (382)
.++|+|+ ++||-|=|..--=+|.+...-..+-+..|.... .+.+.++++..-+........+ -+|.|-++
T Consensus 11 ~i~~vD~--~~~I~~~n~~a~~~f~~~~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~-~~~~~~~~ 83 (106)
T PF13596_consen 11 GIIFVDR--NLRIRYFNPAAARLFNLSPSDIGRPLFDIHPPLSYPNLKKIIEQVRSGKEEEFEIVIP-NGGRWYLV 83 (106)
T ss_dssp EEEEEET--TSBEEEE-SCGC-SS---GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTSBSEEEEEEE-ETTEEEEE
T ss_pred CEEEEcC--CCeEEEeChhHhhhcCCChHHCCCCHHHcCCccchHHHHHHHHHHHcCCCceEEEEec-CCCEEEEE
Confidence 6999999 999999877644444454444566666665543 5666666666555422221222 45655443
No 15
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=24.60 E-value=3.7e+02 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=27.7
Q ss_pred eEEEEEEecCCCceEE-EeCCCCcEEEEeecCCccchh
Q 016802 194 GWLDTTYLSPSGNLRI-SRGNKGTTFVLQKKTEPRQTL 230 (382)
Q Consensus 194 Gwld~TYLDe~~dlRI-sRG~kG~vFVl~R~~~~~q~l 230 (382)
|-+.++|+|++...=| +-.|+-.+|+|.|...+.|+.
T Consensus 111 g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRtP~~s~~~ 148 (174)
T COG3040 111 GDYWVLALDPEYSWAIVGSPDREYLWLLSRTPTLSQET 148 (174)
T ss_pred ccEEEEEECCCccEEEEeCCCcceEEEEecCCCCCHHH
Confidence 7778999999443333 335788999999998777664
No 16
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=23.42 E-value=1.8e+02 Score=24.31 Aligned_cols=50 Identities=18% Similarity=0.486 Sum_probs=33.2
Q ss_pred EecCCCceEEEeCCCCcEEEEee---cCCcc-chhhhcccCc--hHHHHHH-HHHHHcCC
Q 016802 200 YLSPSGNLRISRGNKGTTFVLQK---KTEPR-QTLLSAISTG--TQVEQAI-NEFISSNQ 252 (382)
Q Consensus 200 YLDe~~dlRIsRG~kG~vFVl~R---~~~~~-q~ll~~i~~~--~~I~~~i-~eLea~np 252 (382)
|+=. +||+--|++| +||-.- ..+.. ++..-.|++. ..|.++| ++-+..++
T Consensus 29 fVvh--dirVi~G~~G-lfVAMPSrrt~dgEFrDI~HPI~~~~R~kIq~aVl~~Y~~~~~ 85 (95)
T COG2088 29 FVVH--DIRVIEGNNG-LFVAMPSRRTPDGEFRDIAHPINSDTREKIQDAVLKEYERLDE 85 (95)
T ss_pred EEEe--ccEEEeCCcc-eEEEccCccCCCcchhhccCcCCHHHHHHHHHHHHHHHHHhch
Confidence 4445 8999999999 999753 22222 6667777764 4666665 55666665
No 17
>PHA02773 hypothetical protein; Provisional
Probab=20.94 E-value=73 Score=26.71 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=30.1
Q ss_pred eEEEEEEecCCCceEEEe-CCCCcEEEEeecCCccch
Q 016802 194 GWLDTTYLSPSGNLRISR-GNKGTTFVLQKKTEPRQT 229 (382)
Q Consensus 194 Gwld~TYLDe~~dlRIsR-G~kG~vFVl~R~~~~~q~ 229 (382)
-.+++--.|++||+-|-- .+.|.+|.|.++..-.|-
T Consensus 31 rffeiae~de~gdlciply~segdl~lfkkd~~~yq~ 67 (112)
T PHA02773 31 RFFEIAEKDEDGDLCIPLYDSEGDLFLFKKDANKYQM 67 (112)
T ss_pred HHHHHheecCCCCEEEEeecCCCcEEEEeccchhhhh
Confidence 456788889999999987 679999999999877664
Done!