Query 016802
Match_columns 382
No_of_seqs 249 out of 497
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 04:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 83.5 12 0.00039 32.4 10.7 72 257-331 7-80 (142)
2 4i95_A Putative uncharacterize 64.4 41 0.0014 28.9 9.1 70 259-331 9-80 (142)
3 4gzv_A Hypothetical protein; A 48.5 1.3E+02 0.0044 25.9 9.6 72 87-168 8-81 (142)
4 4i95_A Putative uncharacterize 37.0 2E+02 0.0068 24.6 11.2 73 87-168 8-81 (142)
5 1z8m_A Conserved hypothetical 26.3 44 0.0015 24.8 2.9 17 238-254 25-41 (88)
6 2a6s_A Toxin YOEB; YEFM, antit 21.1 78 0.0027 23.1 3.4 16 238-254 25-40 (84)
7 3uc2_A Hypothetical protein wi 17.3 4.5E+02 0.015 22.4 7.6 87 261-354 23-118 (139)
8 1qwd_A Outer membrane lipoprot 16.0 5E+02 0.017 21.9 8.3 55 312-380 88-148 (177)
9 2fp7_A Serine protease subunit 15.6 90 0.0031 22.5 2.4 20 192-212 28-47 (54)
10 2ijo_A Polyprotein; WEST NIle 14.9 95 0.0032 22.7 2.4 19 192-211 24-42 (58)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=83.47 E-value=12 Score=32.42 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=46.5
Q ss_pred ccccccceeEEEE-EecccCcchhhhhhcCCCCCeeEEccCCceEEEEEecCCe-EEEEEEEEEEeCCcEEEEEEee
Q 016802 257 EERELLEGEWQML-WSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGF-KFSMTGTYAKSSTNTYNVTMDD 331 (382)
Q Consensus 257 ~~~~lL~G~W~L~-ySS~~e~~~~l~~~~~gl~~~Q~Id~~~~~~N~v~~~~~~-~~~v~a~~e~~s~~rv~V~F~~ 331 (382)
-.+.-|.|.|+|. |.++....+.--+. ...+-||.++|++.|++-..... -....++|+..|+..+.=..++
T Consensus 7 ~~~~~L~GvWQ~c~y~~~~~~~~~~l~~---s~~~KIlS~DgtF~N~~m~~~~~aiIt~yGtY~l~SD~~Y~E~i~k 80 (142)
T 4gzv_A 7 FKAADLKGIWQLCHYVSESPDVPGALKP---SNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEK 80 (142)
T ss_dssp GGSCCCCEEEEEEEEEESSTTSCCEEEE---EEEEEEECTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred cccccceEEeEEeeEeecCCCCCceEee---cCceEEECCCCcEEEEEEeCCCCcEEEEeEEEEecCCCeeeeeecc
Confidence 3456799999997 55554322111011 11378899999999998544333 3467889999998876554444
No 2
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=64.41 E-value=41 Score=28.86 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=44.7
Q ss_pred ccccceeEEEEEecccCcchhhhhhcCCCCC-eeEEccCCceEEEEEecCC-eEEEEEEEEEEeCCcEEEEEEee
Q 016802 259 RELLEGEWQMLWSSQMETDSWIENAGNGLMG-KQIVKKNGQMKFEVDILLG-FKFSMTGTYAKSSTNTYNVTMDD 331 (382)
Q Consensus 259 ~~lL~G~W~L~ySS~~e~~~~l~~~~~gl~~-~Q~Id~~~~~~N~v~~~~~-~~~~v~a~~e~~s~~rv~V~F~~ 331 (382)
..-|.|.|+|..=.+.+-.-+.. + +..| +-||-+++++.|++-.... ......++|+..|+..+.=..++
T Consensus 9 ~~~L~GvWQ~C~y~s~~pd~~g~-L--~psn~lKIlSdDgtF~Ni~m~~~~~aiIt~~GtY~~~SD~~Y~E~IeK 80 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSENPDIPGV-L--KPSNTFKVLSDDGRIVNFTIRPGTDAIITGYGTYRQISAAAYKESIEK 80 (142)
T ss_dssp CCSCCEEEEEEEEECSSTTSCCE-E--EEEEEEEEECTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred cccceeEeEEEEEecCCCCCceE-e--ccCccEEEEcCCCcEEEEEEecCCCcEEEEeEEEEecCCcceeeeecc
Confidence 45599999997655443221111 0 1113 7888899999999766322 33467899999988876554444
No 3
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=48.50 E-value=1.3e+02 Score=25.89 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=45.6
Q ss_pred CCCcccceEEEEE-ecCCCCCCcccccccC-ceeeeeEEEEEeeCCCCcEEEEEEeeccceEEEEEEEEEEeCCcEEEEE
Q 016802 87 GSSLIEGRWQLMF-TTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQ 164 (382)
Q Consensus 87 ~~~lL~G~W~LiY-TS~~~~~sp~~~~~~g-l~~~~i~Q~I~id~~~~~v~NvV~f~~~~g~l~V~A~~~v~~~~rv~V~ 164 (382)
...-|.|-|+|++ -+.... .+| +..++.|..| .++|+..|++-.......+...++++..++....=.
T Consensus 8 ~~~~L~GvWQ~c~y~~~~~~-------~~~~l~~s~~~KIl---S~DgtF~N~~m~~~~~aiIt~yGtY~l~SD~~Y~E~ 77 (142)
T 4gzv_A 8 KAADLKGIWQLCHYVSESPD-------VPGALKPSNTFKVL---SDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKES 77 (142)
T ss_dssp GSCCCCEEEEEEEEEESSTT-------SCCEEEEEEEEEEE---CTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEE
T ss_pred ccccceEEeEEeeEeecCCC-------CCceEeecCceEEE---CCCCcEEEEEEeCCCCcEEEEeEEEEecCCCeeeee
Confidence 4567999999994 443221 122 2223455555 378999999865545456777788999888876544
Q ss_pred EEee
Q 016802 165 FDKA 168 (382)
Q Consensus 165 F~~~ 168 (382)
.++-
T Consensus 78 i~kn 81 (142)
T 4gzv_A 78 IEKN 81 (142)
T ss_dssp EEEE
T ss_pred eccc
Confidence 4443
No 4
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=36.97 E-value=2e+02 Score=24.63 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=47.0
Q ss_pred CCCcccceEEEEEecCCCCCCcccccccC-ceeeeeEEEEEeeCCCCcEEEEEEeeccceEEEEEEEEEEeCCcEEEEEE
Q 016802 87 GSSLIEGRWQLMFTTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQF 165 (382)
Q Consensus 87 ~~~lL~G~W~LiYTS~~~~~sp~~~~~~g-l~~~~i~Q~I~id~~~~~v~NvV~f~~~~g~l~V~A~~~v~~~~rv~V~F 165 (382)
...-|.|-|+|+.-.+.. | ..+| +.-++.+..+ .++|+..|++-.......+...++++..++....=.-
T Consensus 8 ~~~~L~GvWQ~C~y~s~~---p---d~~g~L~psn~lKIl---SdDgtF~Ni~m~~~~~aiIt~~GtY~~~SD~~Y~E~I 78 (142)
T 4i95_A 8 EPAHLQGIWQLCHYVSEN---P---DIPGVLKPSNTFKVL---SDDGRIVNFTIRPGTDAIITGYGTYRQISAAAYKESI 78 (142)
T ss_dssp CCCSCCEEEEEEEEECSS---T---TSCCEEEEEEEEEEE---CTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEEE
T ss_pred CcccceeEeEEEEEecCC---C---CCceEeccCccEEEE---cCCCcEEEEEEecCCCcEEEEeEEEEecCCcceeeee
Confidence 456799999999766432 1 1222 2223455545 3789999998885445567777888887777665444
Q ss_pred Eee
Q 016802 166 DKA 168 (382)
Q Consensus 166 ~~~ 168 (382)
++-
T Consensus 79 eKn 81 (142)
T 4i95_A 79 EKN 81 (142)
T ss_dssp EEE
T ss_pred ccc
Confidence 444
No 5
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=26.32 E-value=44 Score=24.81 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHcCCCC
Q 016802 238 TQVEQAINEFISSNQST 254 (382)
Q Consensus 238 ~~I~~~i~eLea~np~~ 254 (382)
..+.+++++|.+.||.+
T Consensus 25 ~~~~~~i~~l~~~~p~~ 41 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLD 41 (88)
T ss_dssp HHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 46778888886557643
No 6
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=21.09 E-value=78 Score=23.13 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHcCCCC
Q 016802 238 TQVEQAINEFISSNQST 254 (382)
Q Consensus 238 ~~I~~~i~eLea~np~~ 254 (382)
..|.++|++|.. ||.+
T Consensus 25 ~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 25 KKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHh-CCCC
Confidence 356777777744 6754
No 7
>3uc2_A Hypothetical protein with immunoglobulin-like FOL; structural genomics, joint center for structural genomics; 2.09A {Pseudomonas aeruginosa}
Probab=17.25 E-value=4.5e+02 Score=22.36 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=51.8
Q ss_pred ccceeEEEEEecccCc--chhhhhhcCCCCCeeEEc-cCCceEEEEEecCC--eEEEEEEEEEEeCCcEEEEEEeecEEE
Q 016802 261 LLEGEWQMLWSSQMET--DSWIENAGNGLMGKQIVK-KNGQMKFEVDILLG--FKFSMTGTYAKSSTNTYNVTMDDAAII 335 (382)
Q Consensus 261 lL~G~W~L~ySS~~e~--~~~l~~~~~gl~~~Q~Id-~~~~~~N~v~~~~~--~~~~v~a~~e~~s~~rv~V~F~~~~i~ 335 (382)
.-.|+|++-|+....+ .+-+.+ .|++.+ +..-+.|+.=+-.+ ....++|+-.-..++...+.|.+-. +
T Consensus 23 ~~~Gd~~VHYsafnSTFLtPeVA~------~Y~I~RSk~~gllNISVl~~g~pv~a~vsG~a~NL~gq~~~L~FreI~-E 95 (139)
T 3uc2_A 23 QRFGDLDVHYNVFNSSFLQPNVAS------AVGLVRSKAQGVINVVPMEKGKPVEAAVTGSAKDLTGKVIPLEFRRVS-E 95 (139)
T ss_dssp EEETTEEEEEEEEEGGGSCHHHHH------HTTCCCCTTEEEEEEEEEETTEECCEEEEEEEECTTCCEEEECCEEEE-E
T ss_pred EEcCCEEEEEEEcccccCCHHHHH------HcCccccCCeEEEEEEEecCCCeEEEEEEEEEECCcCCeEEeeEEEEe-e
Confidence 4579999999975432 222211 377777 66668887655433 3445666666667888899998643 3
Q ss_pred eccc----eecCCCCceeEEEEE
Q 016802 336 CGGF----GYPIKMETKINLQLL 354 (382)
Q Consensus 336 ~g~~----~~p~~~~~~gwLeit 354 (382)
++.+ .+|+..+..-.++|.
T Consensus 96 g~AIYYlAef~~~~~E~l~F~I~ 118 (139)
T 3uc2_A 96 EGAIYNLAQFPISQRETLVFTIK 118 (139)
T ss_dssp TTEEEEEEEEECCSSEEEEEEEE
T ss_pred CCcEEEEEecccCCCeEEEEEEE
Confidence 4444 345544443344443
No 8
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=16.02 E-value=5e+02 Score=21.92 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=35.5
Q ss_pred EEEEEEEEe---CCcEEEEEEeecEEEeccceecCCCCceeEEEEEEeeCcee---EEeCCCCeEEEEEecCCCC
Q 016802 312 SMTGTYAKS---STNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMR---ISRGYNNILFVHLRTDGSN 380 (382)
Q Consensus 312 ~v~a~~e~~---s~~rv~V~F~~~~i~~g~~~~p~~~~~~gwLeitYLDe~lR---I~RG~~GslFVl~R~~~~~ 380 (382)
.+.++..+. .+.+..|+|- +++ .+=.-|+++|++-+ +|..++..++||.|.+.+.
T Consensus 88 ~~~g~a~~~~~~~~gkl~v~f~------~p~--------~~~y~Vl~tD~~Ya~~~v~~~~~~~~wILsR~p~l~ 148 (177)
T 1qwd_A 88 QSEGKAYFTGAPTRAALKVSFF------GPF--------YGGYNVIALDREYRHALVCGPDRDYLWILSRTPTIS 148 (177)
T ss_dssp EEEEEEEESSCTTSCEEEEEEE------TTE--------EEEEEEEEEBTTSSEEEEECSSTTCEEEEESSSSCC
T ss_pred EEEEEEEECCCCCCcEEEEEec------CCc--------cceEEEEEECCCeeEEEEecCCCcEEEEEECCCCCC
Confidence 445554443 3567788882 222 23445889998844 4566778899999987654
No 9
>2fp7_A Serine protease subunit NS2B; flavivirus, NS3 protease, NS2B cofactor; HET: OAR; 1.68A {West nile virus} PDB: 3e90_A*
Probab=15.59 E-value=90 Score=22.47 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=13.8
Q ss_pred cceEEEEEEecCCCceEEEeC
Q 016802 192 AKGWLDTTYLSPSGNLRISRG 212 (382)
Q Consensus 192 ~~Gwld~TYLDe~~dlRIsRG 212 (382)
..--|+++ +|++|+|++.-.
T Consensus 28 ~s~rldV~-~d~~G~f~l~~e 47 (54)
T 2fp7_A 28 SSERVDVR-LDDDGNFQLMND 47 (54)
T ss_dssp CCCEEEEE-ECTTSCEEEC--
T ss_pred CcceEEEE-ECCCCCEEEccC
Confidence 34567888 999888887643
No 10
>2ijo_A Polyprotein; WEST NIle virus, protease, aprotinin, BPTI, NS2B, NS3, flavivirus, serine protease; 2.30A {West nile virus}
Probab=14.93 E-value=95 Score=22.69 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=14.2
Q ss_pred cceEEEEEEecCCCceEEEe
Q 016802 192 AKGWLDTTYLSPSGNLRISR 211 (382)
Q Consensus 192 ~~Gwld~TYLDe~~dlRIsR 211 (382)
..--|+++ +|++|+|++.-
T Consensus 24 ~s~rldV~-~d~~G~f~L~~ 42 (58)
T 2ijo_A 24 SSERVDVR-LDDDGNFQLMN 42 (58)
T ss_dssp CCCEEEEE-ECTTSCEEETC
T ss_pred CcceEEEE-ECCCCCEEEcc
Confidence 34467888 99988888754
Done!