Query 016802
Match_columns 382
No_of_seqs 249 out of 497
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 04:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016802.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016802hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkfa1 d.15.2.2 (A:1-85) Next 40.6 9.3 0.00068 28.3 3.1 10 196-205 44-53 (85)
2 d1ekga_ d.82.2.1 (A:) C-termin 26.6 24 0.0017 27.3 3.5 40 196-237 34-73 (119)
3 d1ew4a_ d.82.2.1 (A:) CyaY {Es 17.5 49 0.0036 24.8 3.6 40 195-237 29-68 (106)
4 d2fqla1 d.82.2.1 (A:61-172) C- 16.8 44 0.0032 25.4 3.1 40 195-237 39-78 (112)
5 d1q67a_ b.55.1.7 (A:) Dcp1 {Ba 13.6 27 0.002 29.8 1.1 22 212-233 39-60 (207)
6 d2gu3a1 d.17.1.6 (A:99-161) Un 11.5 57 0.0041 22.4 2.1 11 195-205 33-43 (63)
7 d1ik0a_ a.26.1.2 (A:) Interleu 10.7 50 0.0037 25.0 1.7 33 237-274 7-39 (113)
8 d1e2ya_ c.47.1.10 (A:) Trypare 9.8 58 0.0042 25.3 1.9 34 217-250 127-160 (167)
9 d1ua7a1 b.71.1.1 (A:348-425) B 8.9 66 0.0048 23.0 1.7 7 362-368 17-23 (78)
10 d1njha_ b.128.1.1 (A:) Hypothe 8.5 76 0.0055 24.4 2.0 48 324-372 51-107 (118)
No 1
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.57 E-value=9.3 Score=28.32 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=8.5
Q ss_pred EEEEEecCCC
Q 016802 196 LDTTYLSPSG 205 (382)
Q Consensus 196 ld~TYLDe~~ 205 (382)
+.+.|+|+++
T Consensus 44 ~~lkY~Ddd~ 53 (85)
T d2bkfa1 44 IQIKYLDEEN 53 (85)
T ss_dssp EEEEEECTTS
T ss_pred ceEEEEcCCC
Confidence 8999999953
No 2
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.64 E-value=24 Score=27.34 Aligned_cols=40 Identities=33% Similarity=0.430 Sum_probs=29.9
Q ss_pred EEEEEecCCCceEEEeCCCCcEEEEeecCCccchhhhcccCc
Q 016802 196 LDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 237 (382)
Q Consensus 196 ld~TYLDe~~dlRIsRG~kG~vFVl~R~~~~~q~ll~~i~~~ 237 (382)
+|+-|-|. =|-|.=++.|+.||+-|..+.+|-||.+-.+|
T Consensus 34 ~D~e~~~g--vLti~f~~~~~~~VINkQ~p~~QIWlASp~sG 73 (119)
T d1ekga_ 34 YDVSFGSG--VLTVKLGGDLGTYVINKQTPNKQIWLSSPSSG 73 (119)
T ss_dssp CEEEEETT--EEEEECCTTCCEEEEEEEGGGTEEEEEETTTE
T ss_pred eeeeccCC--EEEEEECCCCcEEEEeCCCCceeEEEEcCCCC
Confidence 45555554 55666555588999999999999999986554
No 3
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=17.50 E-value=49 Score=24.81 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=30.5
Q ss_pred EEEEEEecCCCceEEEeCCCCcEEEEeecCCccchhhhcccCc
Q 016802 195 WLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 237 (382)
Q Consensus 195 wld~TYLDe~~dlRIsRG~kG~vFVl~R~~~~~q~ll~~i~~~ 237 (382)
-+|+-|-|. =|=|.=++ |+.||+-|..+.+|-||.+-+.|
T Consensus 29 d~D~e~~~g--vLti~~~~-~~~~VINkQ~p~~QIWlaSpsgg 68 (106)
T d1ew4a_ 29 DIDCEINGG--VLTITFEN-GSKIIINRQEPLHQVWLATKQGG 68 (106)
T ss_dssp CCEEEEETT--EEEEECTT-SCEEEEEEETTTTEEEEECSSCE
T ss_pred CeeeeccCC--EEEEEECC-CCEEEEeCCCccceeeEECCCCC
Confidence 356666654 66666665 67999999999999999987655
No 4
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.80 E-value=44 Score=25.36 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=29.5
Q ss_pred EEEEEEecCCCceEEEeCCCCcEEEEeecCCccchhhhcccCc
Q 016802 195 WLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 237 (382)
Q Consensus 195 wld~TYLDe~~dlRIsRG~kG~vFVl~R~~~~~q~ll~~i~~~ 237 (382)
-+|+-|-+. =|-|.=++ |+.||+-|..+.+|-||.+-.+|
T Consensus 39 d~D~e~~~g--vLti~~~~-~~~~VINkQ~p~~QIWlaSp~sG 78 (112)
T d2fqla1 39 IPDVELSHG--VMTLEIPA-FGTYVINKQPPNKQIWLASPLSG 78 (112)
T ss_dssp SCEEECCSS--EEEEEETT-TEEEEEEECCSSSSEEEEETTTE
T ss_pred ceeeeccCC--EEEEEECC-CCEEEEeCCCchhheeEecCCCC
Confidence 345555544 66666654 77999999999999999985543
No 5
>d1q67a_ b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.65 E-value=27 Score=29.75 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=12.2
Q ss_pred CCCCcEEEEeecCCccchhhhc
Q 016802 212 GNKGTTFVLQKKTEPRQTLLSA 233 (382)
Q Consensus 212 G~kG~vFVl~R~~~~~q~ll~~ 233 (382)
+-.|++||..|+..|+|.+++-
T Consensus 39 ~vEGtLFVy~R~~~p~~~~lp~ 60 (207)
T d1q67a_ 39 EYQGVLAIYLRDVSQNTNLLPV 60 (207)
T ss_dssp EEEEEEEEEEECCC--------
T ss_pred CceeEEEEEEeccccccccCCc
Confidence 3459999999999999887664
No 6
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=11.53 E-value=57 Score=22.43 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=8.4
Q ss_pred EEEEEEecCCC
Q 016802 195 WLDTTYLSPSG 205 (382)
Q Consensus 195 wld~TYLDe~~ 205 (382)
-+|+||+|++|
T Consensus 33 vWEVtY~~~~~ 43 (63)
T d2gu3a1 33 LWEVTYLDKEG 43 (63)
T ss_dssp EEEEEEECTTS
T ss_pred EEEEEEEeCCC
Confidence 34999999943
No 7
>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.74 E-value=50 Score=25.02 Aligned_cols=33 Identities=27% Similarity=0.557 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHcCCCCCcccccccceeEEEEEeccc
Q 016802 237 GTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQM 274 (382)
Q Consensus 237 ~~~I~~~i~eLea~np~~~P~~~~lL~G~W~L~ySS~~ 274 (382)
-.+.+|+|+||...+++-. .+|.+| -|+||-.-
T Consensus 7 ~~aLkELIeeL~nitqnqk---apLCNG--SMVWsVnl 39 (113)
T d1ik0a_ 7 STALRELIEELVNITQNQK---APLCNG--SMVWSINL 39 (113)
T ss_dssp HHHHHHHHHHHHHHHHSCS---SCSSSS--CEEECCCC
T ss_pred cHHHHHHHHHHHhcccccc---CcccCC--ceEEEEec
Confidence 4578999999998875543 578888 47777543
No 8
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}
Probab=9.81 E-value=58 Score=25.29 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=16.5
Q ss_pred EEEEeecCCccchhhhcccCchHHHHHHHHHHHc
Q 016802 217 TFVLQKKTEPRQTLLSAISTGTQVEQAINEFISS 250 (382)
Q Consensus 217 vFVl~R~~~~~q~ll~~i~~~~~I~~~i~eLea~ 250 (382)
+||+-+++-.++..+..+..+..++|+++.|+++
T Consensus 127 tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~al 160 (167)
T d1e2ya_ 127 VFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEAL 160 (167)
T ss_dssp EEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred EEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 4555555555554444444443344444444443
No 9
>d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]}
Probab=8.93 E-value=66 Score=22.97 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=6.4
Q ss_pred EEeCCCC
Q 016802 362 ISRGYNN 368 (382)
Q Consensus 362 I~RG~~G 368 (382)
|+||++|
T Consensus 17 ~~RG~kG 23 (78)
T d1ua7a1 17 NQRGSHG 23 (78)
T ss_dssp EEETTTE
T ss_pred EecCCcE
Confidence 5899999
No 10
>d1njha_ b.128.1.1 (A:) Hypothetical protein YojF {Bacillus subtilis [TaxId: 1423]}
Probab=8.51 E-value=76 Score=24.43 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=27.6
Q ss_pred EEEEEEeecEEEe-ccceecCCCCceeEEEE----EE-eeCcee---EEeCCCCeEEE
Q 016802 324 TYNVTMDDAAIIC-GGFGYPIKMETKINLQL----LY-SDDKMR---ISRGYNNILFV 372 (382)
Q Consensus 324 rv~V~F~~~~i~~-g~~~~p~~~~~~gwLei----tY-LDe~lR---I~RG~~GslFV 372 (382)
-..|+|+.+.|.+ ||.++-++.. .||+=. =| +||+=| -+-+++|-+-|
T Consensus 51 Na~v~ye~~~i~G~gPyRVGLK~~-~GWvY~eGLTh~e~de~~rLLlAGhd~~GrLav 107 (118)
T d1njha_ 51 NAKVTYHQAKIKGNGPYRVGLKTE-EGWIYAEGLTEYTVDEENRLLMAGHLPGGKLAI 107 (118)
T ss_dssp EEEECEEEEEEESSSSEEEEEEES-SSEEEEEEECEEEECTTCCEEEEEEETTTTEEE
T ss_pred eeEEEEEEeEEEcCCceEEEEEcC-CCeEEeccceeEEEcCCCcEEEcccCCCCcEEE
Confidence 3477888888875 5666655553 388743 23 555533 24455555544
Done!