BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016803
         (382 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DGW|A Chain A, Crystal Structure Of The Sf3a Splicing Factor Complex Of
           U2 Snrnp
          Length = 402

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 128 ALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYL 177
            ++ PFC  W      F  ++V  +     S  RN  +  +KL ++L+YL
Sbjct: 292 GIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHRYLKYL 341


>pdb|1Z4R|A Chain A, Human Gcn5 Acetyltransferase
          Length = 168

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 325 GEGWHNNHHAFEYSARHGLEWWQVDLTWYVVRFLQAVGLATDVKLPS 371
           G G H  +H  EY  +H + ++      Y + + +  G + D+K+P 
Sbjct: 95  GYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPK 141


>pdb|4AC1|X Chain X, The Structure Of A Fungal
           Endo-Beta-N-Acetylglucosaminidase From Glycosyl
           Hydrolase Family 18, At 1.3a Resolution
          Length = 283

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 178 FAYCGVQSLQGNPIDWVSTHRY 199
           F+Y  +Q  QGN IDW +T  Y
Sbjct: 170 FSYTALQQTQGNDIDWYNTQFY 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.468 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,626,653
Number of Sequences: 62578
Number of extensions: 474994
Number of successful extensions: 1246
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 3
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)