Query 016803
Match_columns 382
No_of_seqs 207 out of 1158
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1600 Fatty acid desaturase 100.0 3E-103 6E-108 761.4 14.4 301 72-381 3-317 (321)
2 PLN02220 delta-9 acyl-lipid de 100.0 1.1E-95 2E-100 713.5 23.5 277 104-381 22-298 (299)
3 COG1398 OLE1 Fatty-acid desatu 100.0 2.6E-80 5.7E-85 590.8 14.0 260 115-378 20-288 (289)
4 cd03505 Delta9-FADS-like The D 100.0 6.5E-73 1.4E-77 517.3 15.9 178 136-368 1-178 (178)
5 PF00487 FA_desaturase: Fatty 99.6 5.6E-15 1.2E-19 133.8 9.1 63 153-215 17-80 (257)
6 cd01060 Membrane-FADS-like The 99.5 5E-14 1.1E-18 117.8 8.2 109 144-336 5-122 (122)
7 cd03512 Alkane-hydroxylase Alk 99.2 1.5E-10 3.2E-15 114.8 14.8 182 137-338 70-275 (314)
8 cd03513 CrtW_beta-carotene-ket 99.0 2.5E-08 5.4E-13 95.0 19.3 154 153-338 44-216 (225)
9 cd03511 Rhizopine-oxygenase-li 99.0 8.4E-09 1.8E-13 100.0 13.9 177 158-337 61-256 (285)
10 PLN02579 sphingolipid delta-4 98.8 5.6E-08 1.2E-12 97.1 14.7 186 134-337 67-269 (323)
11 cd03506 Delta6-FADS-like The D 98.8 3.4E-08 7.3E-13 91.5 9.2 172 159-363 18-204 (204)
12 cd03514 CrtR_beta-carotene-hyd 98.6 6.2E-07 1.3E-11 84.0 12.3 143 156-337 39-185 (207)
13 cd03508 Delta4-sphingolipid-FA 98.4 6.5E-06 1.4E-10 81.2 14.9 91 122-214 26-119 (289)
14 cd03509 DesA_FADS-like Fatty a 98.4 6.3E-06 1.4E-10 81.1 13.8 177 158-337 44-240 (288)
15 cd03510 Rhizobitoxine-FADS-lik 98.4 5.2E-06 1.1E-10 75.9 11.9 77 135-213 16-93 (175)
16 COG3239 DesA Fatty acid desatu 98.3 1.3E-05 2.8E-10 80.7 13.7 72 137-210 61-132 (343)
17 PLN02598 omega-6 fatty acid de 98.2 9.1E-05 2E-09 76.8 17.5 57 153-210 137-194 (421)
18 cd03507 Delta12-FADS-like The 98.2 0.00015 3.2E-09 68.7 17.4 59 153-212 45-104 (222)
19 PLN03198 delta6-acyl-lipid des 98.0 0.00017 3.8E-09 76.6 16.4 69 137-208 234-303 (526)
20 PLN03199 delta6-acyl-lipid des 97.9 0.00073 1.6E-08 71.1 18.8 49 316-368 406-454 (485)
21 PLN02505 omega-6 fatty acid de 97.8 0.0013 2.7E-08 67.6 17.7 55 154-210 99-155 (381)
22 PLN02498 omega-3 fatty acid de 97.5 0.0097 2.1E-07 62.4 19.4 58 153-211 162-220 (450)
23 KOG2987 Fatty acid desaturase 97.2 0.0008 1.7E-08 65.7 7.1 105 119-226 48-164 (324)
24 KOG4232 Delta 6-fatty acid des 96.2 0.18 3.9E-06 52.5 15.8 193 160-368 162-403 (430)
25 COG5274 CYB5 Cytochrome b invo 82.2 0.2 4.4E-06 46.1 -2.0 40 311-352 2-41 (164)
26 KOG4812 Golgi-associated prote 63.4 53 0.0011 32.4 9.1 37 171-207 222-258 (262)
27 PF11947 DUF3464: Protein of u 57.4 24 0.00052 32.3 5.4 23 136-159 96-118 (153)
28 PRK05470 fumarate reductase su 56.9 15 0.00032 32.3 3.8 41 156-205 48-88 (118)
29 PF10520 Kua-UEV1_localn: Kua- 50.9 34 0.00073 32.1 5.4 47 153-214 95-141 (178)
30 PLN02601 beta-carotene hydroxy 45.7 41 0.00089 33.7 5.3 26 305-334 234-259 (303)
31 cd00547 QFR_TypeD_subunitD Qui 45.1 29 0.00063 30.4 3.7 42 156-206 44-85 (115)
32 PLN02953 phosphatidate cytidyl 29.2 1.5E+02 0.0032 31.4 6.5 32 282-314 268-303 (403)
33 cd03508 Delta4-sphingolipid-FA 28.1 1.3E+02 0.0027 30.0 5.7 13 328-340 100-112 (289)
34 PLN02601 beta-carotene hydroxy 24.4 1.5E+02 0.0032 29.9 5.3 34 158-202 226-259 (303)
35 COG3000 ERG3 Sterol desaturase 23.8 75 0.0016 31.0 3.2 18 325-342 203-221 (271)
36 PF14990 DUF4516: Domain of un 21.4 1.1E+02 0.0023 22.9 2.8 28 135-163 5-32 (47)
No 1
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-103 Score=761.38 Aligned_cols=301 Identities=47% Similarity=0.870 Sum_probs=269.1
Q ss_pred CCCCCCCCCCCCCcccccccccchhhh--ccccccccCCCcccchhhhHHHHHHHHHHHHHH---h-hhchHHHHHHHHH
Q 016803 72 EPKPEPEPEQIPEVETYGRILLSDVLV--KRRRSLFSGRNWNSLDISTAGVVLAMHLLALFA---P-FCFTWSSLRVAFG 145 (382)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~lhl~al~~---~-~~~~w~tl~~~~~ 145 (382)
++++..|++.+++|++..+ +... ++||+. ++++|+|+|++ .++.+|++++|+ + +.++|+|++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~w~nv~---~~~~l~~~a~ygl~~~~~~~~w~t~~~~~~ 74 (321)
T KOG1600|consen 3 KTMILREMQKETVDKGESK----KKAVEEKEKRVN-WKRELVWRNVV---LFSALHIVALYGLLAPPFSAKWETLLFAFF 74 (321)
T ss_pred CcccchhccccccCccccc----cccccccccccc-hhcchhhhhhH---HHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 3455556666666654333 3222 345533 89999999999 555555555554 4 5689999999999
Q ss_pred HHHHHhhhhcchhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCCCCCCCCCCCchhhhhhhcc
Q 016803 146 LYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWL 225 (382)
Q Consensus 146 ly~ltg~lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDTd~DPHsp~rGF~~sH~GWl 225 (382)
+|+++| ||||+||||+||||||||++|||++||+|+++|+||+|++|+++||.||||||||+|||||+||||||||||+
T Consensus 75 l~~v~g-lgITag~HRlwsHRSyKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdTD~DPhn~~rGF~FsHvgWl 153 (321)
T KOG1600|consen 75 LYAVGG-LGITAGYHRLWSHRSYKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDTDADPHNPRRGFWFSHVGWL 153 (321)
T ss_pred HHHHhh-ceeeeehhhhcccccccCCccHHHHHHHHHHHhccCChhHHHhhhhhhccccccCCCCCCcccchhhhhhhhH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-chhhhhhCCCCCCCccCCCceeeeehhhhhHHHHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHhhhc
Q 016803 226 FDK-DSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLYALGGFPFIVWGM-------GVRIVWVYHITWLVNS 297 (382)
Q Consensus 226 l~~-~~~~~~~g~~~d~~DL~~Dp~v~fq~r~y~~~~~~~~~vl~~~Gg~~~~~wg~-------~lR~~l~~h~tw~VNS 297 (382)
+++ +|+++++|++.|++||++||++|||+|+|.++++++|++++.+++.+...|++ ++|+++++|+||||||
T Consensus 154 ~~~k~p~~k~~G~~~dvsDL~~dp~v~Fq~k~y~~l~~~~~f~lp~~~p~~~~~~~~~~~~~~~~~r~~~~lh~TwlVNS 233 (321)
T KOG1600|consen 154 LDKKHPQVKECGGRLDVSDLEADPVVRFQRKTYLLLMLFFCFLLPTLGPMYFWGEGMGLAFYVGLFRYCIVLHATWLVNS 233 (321)
T ss_pred hccCChHHHhhcCcCChhHhhhCceeeehhhhHHHHHHHHHHHHHHhCcceeeeecchhhhhHHHHHHHHHHhhHHhhhh
Confidence 987 78888899999999999999999999999999999999999887765444443 4999999999999999
Q ss_pred cccccCCCCCCCCCCCcchHHHHHHHhcCCCccCccccccccccCCCcccccchHHHHHHHHHhCcccccCCCCHHHHhh
Q 016803 298 ACHVWGKQAWNTGDLSRNNWWVALLAFGEGWHNNHHAFEYSARHGLEWWQVDLTWYVVRFLQAVGLATDVKLPSETQKQR 377 (382)
Q Consensus 298 ~aH~~G~rpyd~~~~srNn~~vallt~GEGwHNnHHaFP~sar~G~~w~~~D~t~~~I~~l~~LGLA~dlK~~s~~~~~~ 377 (382)
+||+||.||||++++|+||++++++|+|||||||||+||+|||+|.+|||+|+||++|+++++||||||||+|+++|++|
T Consensus 234 aaH~~G~rp~d~~~~s~nn~~~s~~t~GEgwHNyHH~Fp~dyr~ge~~y~~d~T~~~I~~~a~lGlA~D~K~~s~~~i~~ 313 (321)
T KOG1600|consen 234 AAHIWGSRPYDTNDTSRNNWWVSILTFGEGWHNYHHAFPWDYRHGEEWYQLDITWYLIDFFAALGLAYDLKTPSEAQIRR 313 (321)
T ss_pred HHHHeecccCCCCCCcccceEEEEEEeccccccccccCchhhHhhhHHhhhCcchHHHHHHHHhhhHhhcCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 016803 378 MTFN 381 (382)
Q Consensus 378 ~~~~ 381 (382)
++.+
T Consensus 314 ~~~~ 317 (321)
T KOG1600|consen 314 MALR 317 (321)
T ss_pred HHHh
Confidence 9764
No 2
>PLN02220 delta-9 acyl-lipid desaturase
Probab=100.00 E-value=1.1e-95 Score=713.48 Aligned_cols=277 Identities=60% Similarity=1.201 Sum_probs=267.2
Q ss_pred cccCCCcccchhhhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHhhhhcchhhhhhcCCCCCCCChHHHHHHHHHhH
Q 016803 104 LFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGV 183 (382)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~lhl~al~~~~~~~w~tl~~~~~ly~ltg~lGIT~G~HRl~sHRSfka~~~l~~~L~~~gt 183 (382)
.++.|+|.++++..++.++++|++++++++.++|.++++++++|++++ +|||+||||+|||||||+++|+|++|++||+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~w~~~~~~~~~~~it~-lGiT~GyHRl~sHrsfka~~~l~~~la~~g~ 100 (299)
T PLN02220 22 AFFFRKWTRLDVVRASAVGTVHFLCLLAPFNYKWEALRFGLILYIVTG-LSITFSYHRNLAHRSFKLPKWLEYPFAYSAL 100 (299)
T ss_pred hhhhhccceehhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhccCchhhhhhhhhhhccCCCCCCCCCCCCCchhhhhhhcccccchhhhhhCCCCCCCccCCCceeeeehhhhhHHHHH
Q 016803 184 QSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIA 263 (382)
Q Consensus 184 lA~Qgs~~~Wv~~HR~HHk~sDTd~DPHsp~rGF~~sH~GWll~~~~~~~~~g~~~d~~DL~~Dp~v~fq~r~y~~~~~~ 263 (382)
+|+||+|++|+++||.||+|||||+|||||+||||||||||++++.+..++++++.|++||++||+++||+|+|++.+++
T Consensus 101 ~a~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp~~Gfw~sH~gWl~~~~~~~~~~~~~~~~~Dl~~d~~~~~~~~~~~~~~l~ 180 (299)
T PLN02220 101 FALQGDPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVLWIFDTSYIREKCGGRDNVMDLKQQWFYRFLRKTIGLHILM 180 (299)
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCccccccCcHHHHhHhhcCcchhhhhcccccchHHHHhCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765556667788999999999999999999888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchHHHHHHHhcCCCccCccccccccccCC
Q 016803 264 LGGLLYALGGFPFIVWGMGVRIVWVYHITWLVNSACHVWGKQAWNTGDLSRNNWWVALLAFGEGWHNNHHAFEYSARHGL 343 (382)
Q Consensus 264 ~~~vl~~~Gg~~~~~wg~~lR~~l~~h~tw~VNS~aH~~G~rpyd~~~~srNn~~vallt~GEGwHNnHHaFP~sar~G~ 343 (382)
+++++|++||+++++||+++|+++++|+||+|||+||+||+||||++|+||||++++++|+|||||||||+||+|||+|.
T Consensus 181 ~~~~~~~~gg~~~~~wg~~~r~~~~~h~tw~VNS~~H~~G~rpy~~~d~srN~~~lallt~GEgwHNnHHafP~sar~G~ 260 (299)
T PLN02220 181 FWTLLYLWGGLPYLTWGVGVGGAIGYHVTWLINSACHIWGSRTWKTKDTSRNVWWLSLFTMGESWHNNHHAFESSARQGL 260 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccchhhhcccCCCCCCCCCcchhHHHHHHhccccccccccCCccchhhCC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchHHHHHHHHHhCcccccCCCCHHHHhhhhhc
Q 016803 344 EWWQVDLTWYVVRFLQAVGLATDVKLPSETQKQRMTFN 381 (382)
Q Consensus 344 ~w~~~D~t~~~I~~l~~LGLA~dlK~~s~~~~~~~~~~ 381 (382)
+|||+||||++|++|++||||+|||.|++++++|||++
T Consensus 261 ~w~~~D~t~~~I~~l~~lGLa~dlk~p~~~~~~~~~~~ 298 (299)
T PLN02220 261 EWWQIDITWYLIRFFEVLGLATDVKLPTEAQKRKMAIV 298 (299)
T ss_pred cCCCcCchHHHHHHHHHhCCcccccCCcHHHHHhHhhc
Confidence 99999999999999999999999999999999999976
No 3
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=100.00 E-value=2.6e-80 Score=590.84 Aligned_cols=260 Identities=39% Similarity=0.796 Sum_probs=232.3
Q ss_pred hhhHHHHHHHHHHHHHHhh--hchH-HHHHHHHHHHHHHhhhhcchhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchh
Q 016803 115 ISTAGVVLAMHLLALFAPF--CFTW-SSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPI 191 (382)
Q Consensus 115 ~~~~~~~~~lhl~al~~~~--~~~w-~tl~~~~~ly~ltg~lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~ 191 (382)
+..+++|+.+++.++++.+ .++| +.+++++++|.++| +|||+|+||||||||||+++++|++|+++|++++||+++
T Consensus 20 ~~~v~~f~~~~i~~~l~~~~~~~~~~~~~i~~l~~y~~~~-igIt~G~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~ 98 (289)
T COG1398 20 WNNVLFFIGPLIVAYLAFYPDFFSWLAELIFTLAYYLIGG-IGITLGLHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAI 98 (289)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcc-ceeeeehhhhhhhhhcccchHHHHHHHHHHHhhcCCCce
Confidence 6666789999999888754 3565 55666777777777 999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCCCCC-CCCCCchhhhhhhcccccchhhhhhCCCCCCCccCCCceeeeehhhhhHHHHHHH-----
Q 016803 192 DWVSTHRYHHQFCDSERDP-HSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALG----- 265 (382)
Q Consensus 192 ~Wv~~HR~HHk~sDTd~DP-Hsp~rGF~~sH~GWll~~~~~~~~~g~~~d~~DL~~Dp~v~fq~r~y~~~~~~~~----- 265 (382)
+|+++||.||+|||||+|| |+.+||||||||||++..++ +++ .+.+..|+-+|+..+||+|++...++++.
T Consensus 99 ~W~~~HR~HHr~tDTd~DPh~~~~kGfw~shigWm~~~~~--~~~-~r~~~~~~~kd~~~~~~~r~~~~~~~l~~i~~~l 175 (289)
T COG1398 99 EWVGIHRKHHRKTDTDQDPHYDSFKGFWWSHIGWMLLYSA--EAK-DRETIQKLGKDIPLDWQHRNLYLIALLMQIVLPL 175 (289)
T ss_pred eHHHHHHHhhcccCCCCCCCccccccchhhhcceeeecch--hhc-ChhHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 66679999999999998865 333 34566788899999999988765443333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchHHHHHHHhcCCCccCccccccccccCCCc
Q 016803 266 GLLYALGGFPFIVWGMGVRIVWVYHITWLVNSACHVWGKQAWNTGDLSRNNWWVALLAFGEGWHNNHHAFEYSARHGLEW 345 (382)
Q Consensus 266 ~vl~~~Gg~~~~~wg~~lR~~l~~h~tw~VNS~aH~~G~rpyd~~~~srNn~~vallt~GEGwHNnHHaFP~sar~G~~w 345 (382)
++.+++||..+++|+++.|.++++|+||+|||++|++|+||||.+|+|||+||+|++|||||||||||+||.|||+|.+|
T Consensus 176 ~~~~~~gg~~gl~~~gv~r~~~~~hat~~VNsl~H~~Gyr~fd~~d~arN~ww~al~t~GEgwHNnHHafp~~ar~g~kW 255 (289)
T COG1398 176 FIGYALGGWLGLIWGGVQRLVLVQHATWCVNSLGHYIGYRPFDCRDTARNCWWVALVTFGEGWHNNHHAFPNSARNGLKW 255 (289)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCccceeEEEEeecccccccccccCcchhhcCcee
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhCcccccCCCCHHHHhhh
Q 016803 346 WQVDLTWYVVRFLQAVGLATDVKLPSETQKQRM 378 (382)
Q Consensus 346 ~~~D~t~~~I~~l~~LGLA~dlK~~s~~~~~~~ 378 (382)
||+|+||++|++|+.||||+++|.+++.+++..
T Consensus 256 we~D~tw~~I~l~s~lGLA~~~k~~p~~~~~~~ 288 (289)
T COG1398 256 WEFDVTWWIIKLLSLLGLAKVVKLAPKARIGEG 288 (289)
T ss_pred EEeccHHHHHHHHHHHhHHHhcccCcHHHHhcc
Confidence 999999999999999999999999999988754
No 4
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=100.00 E-value=6.5e-73 Score=517.26 Aligned_cols=178 Identities=56% Similarity=1.061 Sum_probs=173.9
Q ss_pred hHHHHHHHHHHHHHHhhhhcchhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCCCCCCCCCCC
Q 016803 136 TWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIE 215 (382)
Q Consensus 136 ~w~tl~~~~~ly~ltg~lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDTd~DPHsp~r 215 (382)
.|.++++++++|++++ +|||+||||+|||||||+++++|++|+++|++|+||+|++|+++||+||+|+|||+|||||+|
T Consensus 1 ~~~~~~~~~~~~~~~~-lgit~G~HRl~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt~~DPhs~~~ 79 (178)
T cd03505 1 SWATLVFLVLYYLLTG-LGITAGYHRLWAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDTDGDPHSPKR 79 (178)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCCCCCCCCccc
Confidence 3778899999999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcccccchhhhhhCCCCCCCccCCCceeeeehhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Q 016803 216 GFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLYALGGFPFIVWGMGVRIVWVYHITWLV 295 (382)
Q Consensus 216 GF~~sH~GWll~~~~~~~~~g~~~d~~DL~~Dp~v~fq~r~y~~~~~~~~~vl~~~Gg~~~~~wg~~lR~~l~~h~tw~V 295 (382)
||||+||||+ ++++|+++++|+||+|
T Consensus 80 gf~~~h~gW~------------------------------------------------------~~~~r~~~~~h~t~~V 105 (178)
T cd03505 80 GFWFSHVGWL------------------------------------------------------GGLLRIVLVLHATWLV 105 (178)
T ss_pred CcHHHHHhhH------------------------------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999998 5679999999999999
Q ss_pred hccccccCCCCCCCCCCCcchHHHHHHHhcCCCccCccccccccccCCCcccccchHHHHHHHHHhCcccccC
Q 016803 296 NSACHVWGKQAWNTGDLSRNNWWVALLAFGEGWHNNHHAFEYSARHGLEWWQVDLTWYVVRFLQAVGLATDVK 368 (382)
Q Consensus 296 NS~aH~~G~rpyd~~~~srNn~~vallt~GEGwHNnHHaFP~sar~G~~w~~~D~t~~~I~~l~~LGLA~dlK 368 (382)
||+||++|+|||+++|+|+|+++++++|+|||||||||+||+|||+|.+|||+||||++|++|++||||+|||
T Consensus 106 Ns~~H~~G~r~~~~~~~s~n~~~~~llt~GEg~HNnHHafP~~ar~g~~~~~~D~t~~~I~~l~~lGla~~lk 178 (178)
T cd03505 106 NSLAHMWGYRPYDTRDTSRNNWWVALLTFGEGWHNNHHAFPGDARNGLKWYQIDPTKWVIRLLEKLGLAWDLK 178 (178)
T ss_pred HHHHHhcCCCCCCCCCCchhhHHHHHHHccccccccccCCcchhhhCCcCCCcCchHHHHHHHHHcCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.58 E-value=5.6e-15 Score=133.81 Aligned_cols=63 Identities=21% Similarity=0.398 Sum_probs=56.9
Q ss_pred hhcchhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCCCC-CCCCCCC
Q 016803 153 LGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSER-DPHSPIE 215 (382)
Q Consensus 153 lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDTd~-DPHsp~r 215 (382)
++.+.+.++-.+|+++..++++..++..+..+..+++...|...|+.||+++++++ ||.+...
T Consensus 17 ~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 17 FARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred HHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchh
Confidence 66777788888999999999999999888888888899999999999999999988 9999875
No 6
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.50 E-value=5e-14 Score=117.75 Aligned_cols=109 Identities=39% Similarity=0.577 Sum_probs=88.0
Q ss_pred HHHHHHHhhhhcchhhhhhcCCCCCCCC-hHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCCC-CCCCCCCCchhhhh
Q 016803 144 FGLYVVTGLLGITLSFHRNLSHRSFKLP-KWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSE-RDPHSPIEGFWFSH 221 (382)
Q Consensus 144 ~~ly~ltg~lGIT~G~HRl~sHRSfka~-~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDTd-~DPHsp~rGF~~sH 221 (382)
+++.++.+ ++.....|++ +|++|..+ ++-+++..+++. .+..++..|...|..||++++++ +||..+
T Consensus 5 ~~~~~~~~-~~~~~~~H~~-~H~~~~~~~~~n~~~~~~~~~-~~~~~~~~~~~~H~~HH~~~~~~~~D~~~~-------- 73 (122)
T cd01060 5 LLLGLLGG-LGLTVLAHEL-GHRSFFRSRWLNRLLGALLGL-ALGGSYGWWRRSHRRHHRYTNTPGKDPDSA-------- 73 (122)
T ss_pred HHHHHHHH-HHHHHHHHHH-hhhhhhccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCcCCCCCCCccc--------
Confidence 33344444 5889999999 99999854 555666666666 78889999999999999999998 999999
Q ss_pred hhcccccchhhhhhCCCCCCCccCCCceeeeehhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 016803 222 MSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLYALGGFPFIVWGMGVRIVWVYHITWLVNSACHV 301 (382)
Q Consensus 222 ~GWll~~~~~~~~~g~~~d~~DL~~Dp~v~fq~r~y~~~~~~~~~vl~~~Gg~~~~~wg~~lR~~l~~h~tw~VNS~aH~ 301 (382)
+|+++|.
T Consensus 74 -------------------------------------------------------------------------~~~~~H~ 80 (122)
T cd01060 74 -------------------------------------------------------------------------VNYLEHY 80 (122)
T ss_pred -------------------------------------------------------------------------cchHhhc
Confidence 8888888
Q ss_pred cCCCCCCCC-------CCCcchHHHHHHHhcCCCccCccccc
Q 016803 302 WGKQAWNTG-------DLSRNNWWVALLAFGEGWHNNHHAFE 336 (382)
Q Consensus 302 ~G~rpyd~~-------~~srNn~~vallt~GEGwHNnHHaFP 336 (382)
....+.+.+ +.+.|.++..+++.|+++|+.||.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~H~~HHl~P 122 (122)
T cd01060 81 GGDRPFDTDGEWLRTTDNSRNGWLNLLLTGGLGYHNEHHLFP 122 (122)
T ss_pred CCCCCcccccccccccccCcccHHHHHHhcccccccccccCc
Confidence 776665543 34667788888888899999999998
No 7
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.24 E-value=1.5e-10 Score=114.84 Aligned_cols=182 Identities=25% Similarity=0.401 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhh-hhhccCCCCCCCCCCCCC
Q 016803 137 WSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTH-RYHHQFCDSERDPHSPIE 215 (382)
Q Consensus 137 w~tl~~~~~ly~ltg~lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~H-R~HHk~sDTd~DPHsp~r 215 (382)
|..+++++++.++.|.+|+++ .|.+ .||+-+.++++..++ ....+.++ |...| +.||+++.|++||-++++
T Consensus 70 ~~~~~~~~~~G~~~g~i~~~~-aHel-~Hr~~~lnr~lg~~~---~~~~~~~~---~~~~H~~~HH~~v~tp~DP~tar~ 141 (314)
T cd03512 70 LEKVGLILSLGLLSGVIGINT-AHEL-IHRRSRLERWLGKLL---LASLLYGH---FAIEHVRGHHRYVATPEDPATARR 141 (314)
T ss_pred HHHHHHHHHHHHHHHHhhHHH-HHhc-cCCCChHHHHHHHHH---HHHhcccc---eeeeecccCCCCCCCCCCcccccc
Confidence 345566666666766577887 8988 898877666665543 22233334 77777 799999999999999986
Q ss_pred ch-hhhh----------hhcccccchhhhhhCCCCCCCccCCCceeeeehh--hhhHHHHHHHHHHHHhhhHHHHHHHHH
Q 016803 216 GF-WFSH----------MSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRS--TYILHPIALGGLLYALGGFPFIVWGMG 282 (382)
Q Consensus 216 GF-~~sH----------~GWll~~~~~~~~~g~~~d~~DL~~Dp~v~fq~r--~y~~~~~~~~~vl~~~Gg~~~~~wg~~ 282 (382)
|- +|.. -+|.+... ..+++|+ |.....++ .|....+++..+.+++||..++.+ .+
T Consensus 142 ge~~y~f~~r~~~g~~~~aw~~e~~-rl~~~g~----------~~~~~~n~~l~~~~~~~a~~~~~~~~~g~~~l~~-~l 209 (314)
T cd03512 142 GESFYRFLPRALVGSFRSAWKLEKK-RLRRKGR----------SPWSPRNEVLRYLALAVALLALAAALGGLAGLLF-LL 209 (314)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHH-HHHhcCC----------CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 54 2322 12322221 1222221 12222222 233344444444455566544432 45
Q ss_pred HHHHHHHHHHHhhhccccccCCC------CCCCC--CCC--cchHHHHHHHhcCCCccCccccccc
Q 016803 283 VRIVWVYHITWLVNSACHVWGKQ------AWNTG--DLS--RNNWWVALLAFGEGWHNNHHAFEYS 338 (382)
Q Consensus 283 lR~~l~~h~tw~VNS~aH~~G~r------pyd~~--~~s--rNn~~vallt~GEGwHNnHHaFP~s 338 (382)
+..++.+-..-++|.+.|+-=.| .||.- .-| .|++..+++++.-++|..||++|..
T Consensus 210 ~~~~~g~~~l~~~nY~EHyGL~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl~rHsdHH~~p~~ 275 (314)
T cd03512 210 IQAFYAKSLLELVNYIEHYGLLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNLQRHSDHHAHPTR 275 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCccccCCCccCcCcCcHHHHHHHHhcchhhhhccCCCC
Confidence 67777887888999999984222 23321 113 3478999999999999999999973
No 8
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.03 E-value=2.5e-08 Score=94.97 Aligned_cols=154 Identities=17% Similarity=0.260 Sum_probs=85.1
Q ss_pred hhcchhhhhhcCCCCCC-CChHHHHHHH-HHhHhhccCchhhhhhhhhhhccCCCCCCCCCCCC---Cchhhhhhhcccc
Q 016803 153 LGITLSFHRNLSHRSFK-LPKWLEYLFA-YCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPI---EGFWFSHMSWLFD 227 (382)
Q Consensus 153 lGIT~G~HRl~sHRSfk-a~~~l~~~L~-~~gtlA~Qgs~~~Wv~~HR~HHk~sDTd~DPHsp~---rGF~~sH~GWll~ 227 (382)
.|.-+-.|.. +|+++- -++++..++. +++.+-.-.+-..|.+.|..||+++.|++||=-.. .+++ -|..
T Consensus 44 ~glfi~~HDa-~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~~DpD~~~~~~~~~~----~wy~- 117 (225)
T cd03513 44 TGLFIIAHDA-MHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTAKDPDFHKGNPSGFL----PWYL- 117 (225)
T ss_pred HHHHHHHHHh-hhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChH----HHHH-
Confidence 4455568888 899974 4555555444 44334333477789999999999999888884332 2332 1111
Q ss_pred cchhhhhhCCCCCCCccCCCceeeeehhhhhHHH-----HHHHHHHHHhh-hH--HHHHHHHHHHHHH-HHHHH-Hhhhc
Q 016803 228 KDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHP-----IALGGLLYALG-GF--PFIVWGMGVRIVW-VYHIT-WLVNS 297 (382)
Q Consensus 228 ~~~~~~~~g~~~d~~DL~~Dp~v~fq~r~y~~~~-----~~~~~vl~~~G-g~--~~~~wg~~lR~~l-~~h~t-w~VNS 297 (382)
.|.++|+.+.. ++..++++..+ +. ..+.|. +-+.+ ..+.. +..|
T Consensus 118 -----------------------~f~~~y~~~~qli~l~ivw~~~l~~~~~~~~~~~~~~~--~P~l~~~~~l~~f~T~- 171 (225)
T cd03513 118 -----------------------HFMSNYFGWRQLAILAAVWLLLLGLGSAPLANLLLFWA--LPLILSSLQLFYFGTW- 171 (225)
T ss_pred -----------------------HHHHhHhHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH--HHHHHHHHHHHHHHhh-
Confidence 11122211111 11111111110 01 122232 11111 11111 1123
Q ss_pred cccccCCCCCCCCCCCcc---hHHHHHHH-hcCCCccCccccccc
Q 016803 298 ACHVWGKQAWNTGDLSRN---NWWVALLA-FGEGWHNNHHAFEYS 338 (382)
Q Consensus 298 ~aH~~G~rpyd~~~~srN---n~~vallt-~GEGwHNnHHaFP~s 338 (382)
..|.-+++||++..++|. +.++++++ +--|+|+.||.||.-
T Consensus 172 lpH~~~~~~~~~~~~a~~~~~~~~~~~l~c~~fgyH~eHH~fP~~ 216 (225)
T cd03513 172 LPHRPGRGGFADRHRARSSRLSPVLSFLTCYHFGYHHEHHLSPST 216 (225)
T ss_pred cCCCCCCCCCCCcccceecCccHHHHHHHHHhcCcchhhccCCCC
Confidence 889999999998777766 68899988 333499999999963
No 9
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=98.97 E-value=8.4e-09 Score=99.99 Aligned_cols=177 Identities=16% Similarity=0.129 Sum_probs=92.9
Q ss_pred hhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCC-CCCCCCCCCC------Cchhhhhhhccccc--
Q 016803 158 SFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFC-DSERDPHSPI------EGFWFSHMSWLFDK-- 228 (382)
Q Consensus 158 G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~s-DTd~DPHsp~------rGF~~sH~GWll~~-- 228 (382)
-.|.. +|+++.-++++..++..+.++....+...|...|..||+++ |+++||-.-. +.++..-.|+....
T Consensus 61 ~~He~-~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~~~~~~~~~~g~~~~~~~ 139 (285)
T cd03511 61 RWHEC-VHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYTQIPGRDPELAVPRPPTLREYLLALSGLPYWWGK 139 (285)
T ss_pred HHHHh-hcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCcCCCCCCCCCCCCCchHHHHHHHHHhChHHHHHH
Confidence 47888 99999889999888877666666677889999999999999 4668885432 11222223322111
Q ss_pred chhhh--hhCCCC-CCCccC---CCceeeeehhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 016803 229 DSVLE--RCGGPN-NVGDLE---KQPFYRFLRSTYILHPIALGGLLYALGGFPFIVWGMGVRIVWVYHITWLVNSACHVW 302 (382)
Q Consensus 229 ~~~~~--~~g~~~-d~~DL~---~Dp~v~fq~r~y~~~~~~~~~vl~~~Gg~~~~~wg~~lR~~l~~h~tw~VNS~aH~~ 302 (382)
-...- ..+... +.+... +.+.+....+.+....+++..+. +..|...+++..++-+++......+++.+.|.-
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~~wllP~l~~~~~~~~~~~~eH~~ 218 (285)
T cd03511 140 LRTVFRHAFGAVSEAEKPFIPAEERPKVVREARAMLAVYAGLIALS-LYLGSPLLVLVWGLPLLLGQPILRLFLLAEHGG 218 (285)
T ss_pred HHHHHHHHhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 00000 011000 000000 00000000000111111111111 222333344444454555555666678888873
Q ss_pred CCCCCCCC-CCCcc---hHHHHHHHhcCCCccCcccccc
Q 016803 303 GKQAWNTG-DLSRN---NWWVALLAFGEGWHNNHHAFEY 337 (382)
Q Consensus 303 G~rpyd~~-~~srN---n~~vallt~GEGwHNnHHaFP~ 337 (382)
. .+.+.. .++|+ ++++.++.++-++|--||.||.
T Consensus 219 ~-~~~~~~~~~trs~~~~~~~~~l~~n~nyH~eHHl~P~ 256 (285)
T cd03511 219 C-PEDANDLRNTRTTLTNPPLRFLYWNMPYHAEHHMYPS 256 (285)
T ss_pred C-CcccchhhhhhhhhhhHHHHHHHcCCchHHHHhcCCC
Confidence 2 221111 12343 5788999999999999999996
No 10
>PLN02579 sphingolipid delta-4 desaturase
Probab=98.85 E-value=5.6e-08 Score=97.14 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=96.5
Q ss_pred hchHHHHHH-HHHHHHHHhhhhcchhhhhhcCCCCCCCChHHHHHHHHHhHh-hccCchhhhhhhhhhhccCCC-CCCCC
Q 016803 134 CFTWSSLRV-AFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQ-SLQGNPIDWVSTHRYHHQFCD-SERDP 210 (382)
Q Consensus 134 ~~~w~tl~~-~~~ly~ltg~lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtl-A~Qgs~~~Wv~~HR~HHk~sD-Td~DP 210 (382)
..+|..+++ +.++..+.+ .++-+..|.. +|+++-.++++..++.++..+ .+.....+|.+.|..||+++- .+.||
T Consensus 67 ~~~w~~~l~~a~~~~g~~~-~~lf~~~HD~-~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~ 144 (323)
T PLN02579 67 DAGWPKILLVAYFFGGFLN-HNLFLAIHEL-SHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDM 144 (323)
T ss_pred cCCHHHHHHHHHHHHHHHH-HHHHHHHHHh-hHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCC
Confidence 466765444 333333333 4566668998 999988888887777665543 444455679999999999996 35577
Q ss_pred CCCC--C---------chhhhhhhccccc-chhhhhhCCCCCCCccCCCceeeeehhhhhHHHHHHHHHHHHhhhHHHHH
Q 016803 211 HSPI--E---------GFWFSHMSWLFDK-DSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLYALGGFPFIV 278 (382)
Q Consensus 211 Hsp~--r---------GF~~sH~GWll~~-~~~~~~~g~~~d~~DL~~Dp~v~fq~r~y~~~~~~~~~vl~~~Gg~~~~~ 278 (382)
--+. + +++|.-.+..+-. .|...+ ..|..++. ......++++..+++...|+..++
T Consensus 145 Di~t~~E~~l~~~~~~~~~~~~~~~~f~~~rp~~~~-----------~~~~~~~~-~in~~~~~~~~~~l~~~~G~~~ll 212 (323)
T PLN02579 145 DIPSQGEARLVRNTLSKIVWVFLQLFFYALRPLFVN-----------PKPPGLWE-FINLLTQIAFDAALVYFAGWKSLA 212 (323)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-----------cCCchHHH-HHHHHHHHHHHHHHHHHHCHHHHH
Confidence 7665 2 2333223322211 111110 11111111 111122222222333445665555
Q ss_pred HHHHHHHHHHHHHHHhhh--ccccccCCCCCCCCCCCcchHHHHHHHhcCCCccCcccccc
Q 016803 279 WGMGVRIVWVYHITWLVN--SACHVWGKQAWNTGDLSRNNWWVALLAFGEGWHNNHHAFEY 337 (382)
Q Consensus 279 wg~~lR~~l~~h~tw~VN--S~aH~~G~rpyd~~~~srNn~~vallt~GEGwHNnHHaFP~ 337 (382)
|.++.. ++..+..-+++ +..|+ +..+++... |-. .++.++++.-|+||-||.||.
T Consensus 213 yl~~~~-~~~~~lhp~~g~~~~ehy-~~~~~~ety-syy-g~ln~l~~NigYH~eHH~fP~ 269 (323)
T PLN02579 213 YLILST-FLGGGLHPMAGHFISEHY-VFNPGQETY-SYY-GPLNLLTWNVGYHNEHHDFPR 269 (323)
T ss_pred HHHHHH-HHhcccccccceeeccce-eccCCCCce-eeh-hHHHHHhhcccccHhhcCCCC
Confidence 533222 22222222222 12233 333332211 333 466999999999999999996
No 11
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=98.76 E-value=3.4e-08 Score=91.50 Aligned_cols=172 Identities=18% Similarity=0.199 Sum_probs=101.0
Q ss_pred hhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCC-CCCCCCCCCchhhhhhhcccccchhhhhhCC
Q 016803 159 FHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDS-ERDPHSPIEGFWFSHMSWLFDKDSVLERCGG 237 (382)
Q Consensus 159 ~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDT-d~DPHsp~rGF~~sH~GWll~~~~~~~~~g~ 237 (382)
.|-. +|+++..++++..++..+.......|...|...|..||+++.+ +.||--...+.+. ..++..
T Consensus 18 ~Hd~-~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~-------~~~~~~----- 84 (204)
T cd03506 18 AHDA-GHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLA-------RSEPAF----- 84 (204)
T ss_pred HHhc-cCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEE-------eccccc-----
Confidence 4666 9999999999988887777777778999999999999999995 5999876654331 111000
Q ss_pred CCCCCccCCCceeeeehhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC----------
Q 016803 238 PNNVGDLEKQPFYRFLRSTYILHPIALGGLLYALGGFPFIVWGMGVRIVWVYHITWLVNSACHVWGKQAW---------- 307 (382)
Q Consensus 238 ~~d~~DL~~Dp~v~fq~r~y~~~~~~~~~vl~~~Gg~~~~~wg~~lR~~l~~h~tw~VNS~aH~~G~rpy---------- 307 (382)
..|....+..++|..++++++.++ +.+++ .+.++.++.+. ++-++.|..-.-++
T Consensus 85 ---~~~~~~~~~~~~q~~~~~~~~~~~-~~~~~---~~~~~~~~~l~---------~~~~~~H~~~~~~~~~~~~~~~w~ 148 (204)
T cd03506 85 ---GKDQKKRFLHRYQHFYFFPLLALL-LLAFL---VVQLAGGLWLA---------VVFQLNHFGMPVEDPPGESKNDWL 148 (204)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHhhhhh---------eEeecccccccccCCCCCcccCHH
Confidence 123334456777776665433222 11111 11111111111 23344555332222
Q ss_pred CCC-CCCc---chHHHHHHHhcCCCccCccccccccccCCCcccccchHHHHHHHHHhCc
Q 016803 308 NTG-DLSR---NNWWVALLAFGEGWHNNHHAFEYSARHGLEWWQVDLTWYVVRFLQAVGL 363 (382)
Q Consensus 308 d~~-~~sr---Nn~~vallt~GEGwHNnHHaFP~sar~G~~w~~~D~t~~~I~~l~~LGL 363 (382)
+.. .+++ +++++.+++.|.++|.-||.||.-.++-.. -....+=+++++.|+
T Consensus 149 ~~q~~tt~~~~~~~~~~~l~ggln~qieHHLfP~ip~~~l~----~~~~~v~~~~~~~gv 204 (204)
T cd03506 149 ERQVLTTRNITGSPFLDWLHGGLNYQIEHHLFPTMPRHNYP----KVAPLVRELCKKHGL 204 (204)
T ss_pred HHHHhCcccCCCCCHHHHHhcchhhHHHHhcCCCchhhhHH----HHHHHHHHHHHHhCc
Confidence 100 1122 468999999999999999999986554321 334444445665553
No 12
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=98.59 E-value=6.2e-07 Score=83.97 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=80.7
Q ss_pred chhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCCC-CCCCCCCCchhhhhhhcccccchhhhh
Q 016803 156 TLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSE-RDPHSPIEGFWFSHMSWLFDKDSVLER 234 (382)
Q Consensus 156 T~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDTd-~DPHsp~rGF~~sH~GWll~~~~~~~~ 234 (382)
..-.|.. +|+++--++++..++..+..+..-.+...|...|..||+++.++ +||-.. + .+.
T Consensus 39 ~~~~Hda-~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~-----------~------~~~ 100 (207)
T cd03514 39 GTVIHDA-SHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF-----------L------LEW 100 (207)
T ss_pred HHHHHHc-ccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH-----------H------HHH
Confidence 3446877 99998878888666655544444457778999999999999975 887543 0 000
Q ss_pred hCCCCCCCccCCCceeeeehhhhhHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHhhhcccccc--CCCCCCCCC
Q 016803 235 CGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLYALGGFPFI-VWGMGVRIVWVYHITWLVNSACHVW--GKQAWNTGD 311 (382)
Q Consensus 235 ~g~~~d~~DL~~Dp~v~fq~r~y~~~~~~~~~vl~~~Gg~~~~-~wg~~lR~~l~~h~tw~VNS~aH~~--G~rpyd~~~ 311 (382)
...+... .++..+.++..+++..+ +| .+...+......+....+-|.- +++.++. .
T Consensus 101 -----------------~~~~~~~--~~~~~~~~~~~~~~~~~l~~-~iP~l~~~~~l~~~~~~~~H~~~~~~~~~~~-~ 159 (207)
T cd03514 101 -----------------LVARSLF--ITLLVIAILFGFLWELLNLW-FLPALIVGTYLALFFDWLPHHPFEETQRWDN-S 159 (207)
T ss_pred -----------------HHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHheeeCccCCCCccchhh-h
Confidence 0001111 11111111222222222 23 2223333333444444555652 2333322 2
Q ss_pred CCcchHHHHHHHhcCCCccCcccccc
Q 016803 312 LSRNNWWVALLAFGEGWHNNHHAFEY 337 (382)
Q Consensus 312 ~srNn~~vallt~GEGwHNnHHaFP~ 337 (382)
.+..+++..++++|.++|--||.||.
T Consensus 160 ~~~~~~l~~~l~~~~nyH~~HHL~P~ 185 (207)
T cd03514 160 RVYPSKLLNPLIMGQNYHLVHHLWPS 185 (207)
T ss_pred hcccchhHheeecCCchhHHHhCCCC
Confidence 33446788899999999999999997
No 13
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=98.41 E-value=6.5e-06 Score=81.19 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhchHHHHH-HHHHHHHHHhhhhcchhhhhhcCCCCCCCChHHHHHHHHH-hHhhccCchhhhhhhhhh
Q 016803 122 LAMHLLALFAPFCFTWSSLR-VAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYC-GVQSLQGNPIDWVSTHRY 199 (382)
Q Consensus 122 ~~lhl~al~~~~~~~w~tl~-~~~~ly~ltg~lGIT~G~HRl~sHRSfka~~~l~~~L~~~-gtlA~Qgs~~~Wv~~HR~ 199 (382)
+++.+++.+.....+|...+ .++++..... .++.+..|.. +|+++--++.+..++..+ +...+......|...|..
T Consensus 26 v~~~~~~~~~l~~~sw~~~ll~a~vi~~~~~-~~l~~l~Hd~-~H~~~f~~~~~N~~~g~~~~~~~g~p~~~~~r~~H~~ 103 (289)
T cd03508 26 VLLQIITAYLLRDSSWWKILLVAYFFGGTIN-HSLFLAIHEI-SHNLAFGKPLWNRLFGIFANLPIGVPYSISFKKYHLE 103 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHh-HHHhhcCChHHHHHHHHHHHHHhcCChhhHHHHHHHH
Confidence 33333333333345564333 3333322222 4556667988 899877777775555443 333333222358899999
Q ss_pred hccCCCCC-CCCCCCC
Q 016803 200 HHQFCDSE-RDPHSPI 214 (382)
Q Consensus 200 HHk~sDTd-~DPHsp~ 214 (382)
||+++-++ .||=-+.
T Consensus 104 HH~~~n~~~~DpDi~~ 119 (289)
T cd03508 104 HHRYLGEDGLDTDIPT 119 (289)
T ss_pred hccCCCCCCCCCCcch
Confidence 99999865 4775444
No 14
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=98.38 E-value=6.3e-06 Score=81.14 Aligned_cols=177 Identities=15% Similarity=0.104 Sum_probs=87.1
Q ss_pred hhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCC---CCCCCCCCC-Cchhhhhhhcc------cc
Q 016803 158 SFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCD---SERDPHSPI-EGFWFSHMSWL------FD 227 (382)
Q Consensus 158 G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sD---Td~DPHsp~-rGF~~sH~GWl------l~ 227 (382)
-.|.. +|+++--++++.-++..+. +..--+.-.|...|..||++++ .|.||-+.. ..--|..+.+. +.
T Consensus 44 l~Hd~-~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~~~~~~~~r~~~~~~ 121 (288)
T cd03509 44 LQHEL-LHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLSPEQWARLPRWQRALLRAN 121 (288)
T ss_pred HHHHh-hccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceecHHHHhhCcHHHHHHHHHh
Confidence 37888 9999998888877775542 2222355689999999999985 357887653 11111212111 00
Q ss_pred cchhhh-hhCC-----CCCCCccCC-CceeeeehhhhhHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 016803 228 KDSVLE-RCGG-----PNNVGDLEK-QPFYRFLRSTYILHPIA---LGGLLYALGGFPFIVWGMGVRIVWVYHITWLVNS 297 (382)
Q Consensus 228 ~~~~~~-~~g~-----~~d~~DL~~-Dp~v~fq~r~y~~~~~~---~~~vl~~~Gg~~~~~wg~~lR~~l~~h~tw~VNS 297 (382)
++.... -.|. .....|... .+-.+...+-+....+. +.+.+...+|++..+|. +.-..+...+.-+-+.
T Consensus 122 ~~~~~~~l~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~la~~~~~~~~~ 200 (288)
T cd03509 122 NTLLGRLILGPPLGLIAFARDEFRALRAGDRAALRAWLLHAALLAPLLAWLQLSAGIPWWAYL-LAVYYPALSLAKIRTF 200 (288)
T ss_pred hcchhHHhhhhHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHhhchH
Confidence 000000 0000 000000000 00001111112211111 11111223455555543 2233334444445677
Q ss_pred cccccCCCCCCCCCCCcchHHHHHHHhcCCCccCcccccc
Q 016803 298 ACHVWGKQAWNTGDLSRNNWWVALLAFGEGWHNNHHAFEY 337 (382)
Q Consensus 298 ~aH~~G~rpyd~~~~srNn~~vallt~GEGwHNnHHaFP~ 337 (382)
..|.++..+-.......-++++.+++..-++|.-||.+|.
T Consensus 201 ~Eh~~~~~~~~rs~~~~~~~~~~~l~~ninyH~~HH~~P~ 240 (288)
T cd03509 201 LEHRAHERPRGRTVINEAGGPLRLLFLNNNLHVVHHDLPT 240 (288)
T ss_pred hhccCCCCccCCceeeeCcHHHHHHHhcCCchHhhcCCCC
Confidence 7888876543211111125678999999999999999996
No 15
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=98.36 E-value=5.2e-06 Score=75.94 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHHHhhhhcchhhhhhcCCCCCCCChHHHHHHH-HHhHhhccCchhhhhhhhhhhccCCCCCCCCCCC
Q 016803 135 FTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFA-YCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSP 213 (382)
Q Consensus 135 ~~w~tl~~~~~ly~ltg~lGIT~G~HRl~sHRSfka~~~l~~~L~-~~gtlA~Qgs~~~Wv~~HR~HHk~sDTd~DPHsp 213 (382)
.+|....+++++..... .|+..-.|.. +|+++--++++..++. +++.+..-.+.-.|...|..||+++.|++||--.
T Consensus 16 ~~~~~~~l~~~~~g~~~-~~l~~l~Hea-~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH~~~~~~~Dpd~~ 93 (175)
T cd03510 16 PNWLAYLLAVLLIGARQ-RALAILMHDA-AHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHHRHLGTEDDPDLA 93 (175)
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHHHHH-HHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHhCccCCCCCCcHH
Confidence 35555554444433333 5666667887 8999877888876664 3333333336668999999999999999998765
No 16
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=98.27 E-value=1.3e-05 Score=80.67 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCCCCCC
Q 016803 137 WSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDP 210 (382)
Q Consensus 137 w~tl~~~~~ly~ltg~lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDTd~DP 210 (382)
|..+.+++++..... .|.-...|-+ .|+||.-++++--++..+.+...-.++..|...|..||+++-+++||
T Consensus 61 w~~~~l~~~~~~~~l-~~~~~v~Hd~-~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d 132 (343)
T COG3239 61 WWLLPLALLLAGLLL-TGLFSVGHDC-GHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDD 132 (343)
T ss_pred HHHHHHHHHHHHHHH-HHHHhhhhhc-cccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCC
Confidence 666665555444323 4555568888 99999989999777666555555577889999999999999998888
No 17
>PLN02598 omega-6 fatty acid desaturase
Probab=98.17 E-value=9.1e-05 Score=76.76 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=44.8
Q ss_pred hhcchhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCC-CCCCC
Q 016803 153 LGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCD-SERDP 210 (382)
Q Consensus 153 lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sD-Td~DP 210 (382)
.|+-+-.|.+ .|++|--++++.-++..+..+..--+...|...|+.||+++. .++||
T Consensus 137 ~~l~vl~Hec-~H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 194 (421)
T PLN02598 137 TGFFVIGHDC-GHNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDT 194 (421)
T ss_pred HHHHHHHHhc-cccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCC
Confidence 4567778999 999999999987776554444444688889999999999997 47785
No 18
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=98.16 E-value=0.00015 Score=68.66 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=43.5
Q ss_pred hhcchhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCC-CCCCCC
Q 016803 153 LGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDS-ERDPHS 212 (382)
Q Consensus 153 lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDT-d~DPHs 212 (382)
.|+-+-.|.+ .|+++-.++++..++..+..+....+.-.|...|..||+++.+ ++||--
T Consensus 45 ~~l~~l~He~-~H~~~~~~~~~N~~~g~~~~~~~~~p~~~w~~~H~~HH~~~~~~~~D~~~ 104 (222)
T cd03507 45 TGLFVLGHDC-GHGSFSDNRRLNDIVGHILHSPLLVPYHSWRISHNRHHAHTGNLEGDEVW 104 (222)
T ss_pred HHHHHHhhcc-CCcccccchhHHHHHHHHHHHHHhCChHHHHHHHHHHHhccCCCCCCCcc
Confidence 3445568888 9999988888866665544343445778899999999999886 677544
No 19
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=98.01 E-value=0.00017 Score=76.61 Aligned_cols=69 Identities=22% Similarity=0.222 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhhcCCCCCCCChHHHHHHHH-HhHhhccCchhhhhhhhhhhccCCCCCC
Q 016803 137 WSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAY-CGVQSLQGNPIDWVSTHRYHHQFCDSER 208 (382)
Q Consensus 137 w~tl~~~~~ly~ltg~lGIT~G~HRl~sHRSfka~~~l~~~L~~-~gtlA~Qgs~~~Wv~~HR~HHk~sDTd~ 208 (382)
|..++.++++.++.+-+|+ + .|-. .|.++.-++++.-++.. ++.+..-.|..+|...|..||.++-..+
T Consensus 234 ~~~ll~a~llgl~~~q~g~-l-~HD~-~H~s~~~~~~~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~ 303 (526)
T PLN03198 234 SAVLASACMMALCFQQCGW-L-SHDF-LHNQVFETRWLNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECD 303 (526)
T ss_pred HHHHHHHHHHHHHHHHHHH-H-HHhc-ccccccCCcHHHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCC
Confidence 4444444443333332333 2 3776 89998888777666644 3556555789999999999999998753
No 20
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=97.92 E-value=0.00073 Score=71.10 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=38.5
Q ss_pred hHHHHHHHhcCCCccCccccccccccCCCcccccchHHHHHHHHHhCcccccC
Q 016803 316 NWWVALLAFGEGWHNNHHAFEYSARHGLEWWQVDLTWYVVRFLQAVGLATDVK 368 (382)
Q Consensus 316 n~~vallt~GEGwHNnHHaFP~sar~G~~w~~~D~t~~~I~~l~~LGLA~dlK 368 (382)
++++.+++.|--+|=-||-||.-.|.-.. .+...+-.++++-|+-|...
T Consensus 406 s~~~~wf~GGLN~QIEHHLFP~mp~~~y~----~i~piVk~~C~k~glpY~~~ 454 (485)
T PLN03199 406 QAFVDWFCGGLQYQVDHHLFPMLPRHNIA----KCHALVESFCKEWGVKYHEA 454 (485)
T ss_pred chHHHHHhccchhhhhhhcCCCCchhhHH----hhhHHHHHHHHHhCCCcccc
Confidence 57999999999888899999997765532 46677777788888877654
No 21
>PLN02505 omega-6 fatty acid desaturase
Probab=97.80 E-value=0.0013 Score=67.57 Aligned_cols=55 Identities=29% Similarity=0.441 Sum_probs=41.6
Q ss_pred hcchhhhhhcCCCCCCCChHHHHHHH-HHhHhhccCchhhhhhhhhhhccCCCC-CCCC
Q 016803 154 GITLSFHRNLSHRSFKLPKWLEYLFA-YCGVQSLQGNPIDWVSTHRYHHQFCDS-ERDP 210 (382)
Q Consensus 154 GIT~G~HRl~sHRSfka~~~l~~~L~-~~gtlA~Qgs~~~Wv~~HR~HHk~sDT-d~DP 210 (382)
|+-+-.|.+ .|+||--++++.-++. +++. ....+...|...|+.||+++-. ++||
T Consensus 99 ~l~vl~HDc-gH~s~~~~~~lN~~vG~i~~~-~ll~p~~~Wr~~H~~HH~~tn~~~~D~ 155 (381)
T PLN02505 99 GVWVIAHEC-GHHAFSDYQWLDDTVGLVLHS-ALLVPYFSWKYSHRRHHSNTGSLERDE 155 (381)
T ss_pred HHHHHHHhh-cchhhhCChHHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhccCCCCCCc
Confidence 344467888 9999988888866664 3444 3457888999999999999974 6676
No 22
>PLN02498 omega-3 fatty acid desaturase
Probab=97.51 E-value=0.0097 Score=62.37 Aligned_cols=58 Identities=24% Similarity=0.196 Sum_probs=45.4
Q ss_pred hhcchhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCC-CCCCC
Q 016803 153 LGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDS-ERDPH 211 (382)
Q Consensus 153 lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDT-d~DPH 211 (382)
.|+-+=.|.+ .|++|--++++.-++..+..+...-+...|...|+.||+++-. |+||-
T Consensus 162 ~gL~vl~HDc-gHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~ 220 (450)
T PLN02498 162 WALFVLGHDC-GHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES 220 (450)
T ss_pred HHHHHHHHhc-cccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 3556668988 9999999988877766555555567888999999999999874 66664
No 23
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=97.23 E-value=0.0008 Score=65.71 Aligned_cols=105 Identities=20% Similarity=0.359 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHhhh--hcchhhhhhcCCC-CCCCChHH--HHHHHHHhHhhccCchhhh
Q 016803 119 GVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLL--GITLSFHRNLSHR-SFKLPKWL--EYLFAYCGVQSLQGNPIDW 193 (382)
Q Consensus 119 ~~~~~lhl~al~~~~~~~w~tl~~~~~ly~ltg~l--GIT~G~HRl~sHR-Sfka~~~l--~~~L~~~gtlA~Qgs~~~W 193 (382)
+.++++.+++.+.+-..+|.-+++ ..|+++||+ ..|+..|.+ ||. +|..++++ |++-++++--.+..=.+..
T Consensus 48 ~~~Vi~Q~~~~~ll~dl~W~~il~--~AYf~gg~iNhsl~LAIHei-SHN~aFg~~rpl~NR~~g~fANLPigvP~siSF 124 (324)
T KOG2987|consen 48 LGMVILQILAAYLLRDLDWKWILF--IAYFFGGFINHSLTLAIHEI-SHNLAFGTNRPLYNRIFGFFANLPIGVPMSISF 124 (324)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHH--HHHHhhhhhchhHHHHHHHh-hhhhhcccCchHHHHHHHHhhcCcccCceeeee
Confidence 355666777776666677866554 236666654 678889999 887 79997766 7777777777766666778
Q ss_pred hhhhhhhccCCCCC-CCCCCCC--Cchhh----hhhhccc
Q 016803 194 VSTHRYHHQFCDSE-RDPHSPI--EGFWF----SHMSWLF 226 (382)
Q Consensus 194 v~~HR~HHk~sDTd-~DPHsp~--rGF~~----sH~GWll 226 (382)
-.-|..||+|...| -|--=|+ ++.+| .-+-|+.
T Consensus 125 kkYHleHHry~G~DgiDtDvPT~~Ea~~f~t~~~K~iw~~ 164 (324)
T KOG2987|consen 125 KKYHLEHHRYLGVDGIDTDVPTRFEAWLFDTAFGKLIWVT 164 (324)
T ss_pred hhhhhHHhHhcCCccccCCCCchhheehhhhhhHHHHHHH
Confidence 89999999998754 2333343 55543 3444543
No 24
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=96.25 E-value=0.18 Score=52.51 Aligned_cols=193 Identities=17% Similarity=0.150 Sum_probs=102.5
Q ss_pred hhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCC-CCCCCCCCCchhhhhhhcccccchhhhhhCCC
Q 016803 160 HRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDS-ERDPHSPIEGFWFSHMSWLFDKDSVLERCGGP 238 (382)
Q Consensus 160 HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDT-d~DPHsp~rGF~~sH~GWll~~~~~~~~~g~~ 238 (382)
|-+.=++-||.++|-..+=++.+..--..|+-||...|-.||.++.. ++||=.-..-.| +-|-.+... ..+.++
T Consensus 162 Hd~gH~~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~f---l~g~~~~~~--~~k~kr 236 (430)
T KOG4232|consen 162 HDYGHLSIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAF---LLGDPNSHE--YGKKKR 236 (430)
T ss_pred cccccccccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchh---hhCCCchhh--hcccce
Confidence 44434445888888766666666665555899999999999999985 777765443322 333333221 111112
Q ss_pred CCCCccCCCceeeeehhhhh-------HHHHHHH-------------------------HHHHHhhhHHHHHH---HHHH
Q 016803 239 NNVGDLEKQPFYRFLRSTYI-------LHPIALG-------------------------GLLYALGGFPFIVW---GMGV 283 (382)
Q Consensus 239 ~d~~DL~~Dp~v~fq~r~y~-------~~~~~~~-------------------------~vl~~~Gg~~~~~w---g~~l 283 (382)
....+ ..|+.|+. .++.+.. ++.+.+++.+..+. ...+
T Consensus 237 k~~~~-------~~qh~yf~~~~~p~l~~~~~~~~~~~~~~~~~~w~Dl~~~~~~~~~~~i~~~~~~~~~~~~~L~~w~~ 309 (430)
T KOG4232|consen 237 KYTPY-------PEQHLYFFLIGPPFLRLMWFQQSIIFVQTNLLLWYDLYWPDRFYLRAFIYLHWGWGLLLLSCLPNWPI 309 (430)
T ss_pred eEeec-------ccceEEEEeccchHHHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHhhHHHhcchhhhHHHHhccCchH
Confidence 22212 22222222 1111000 01111111111111 0135
Q ss_pred HHHHHHHHHHhhhccccc----cCCCC----C-----CCCCCCcchHHHHHHHhcCCCccCccccccccccCCCcccccc
Q 016803 284 RIVWVYHITWLVNSACHV----WGKQA----W-----NTGDLSRNNWWVALLAFGEGWHNNHHAFEYSARHGLEWWQVDL 350 (382)
Q Consensus 284 R~~l~~h~tw~VNS~aH~----~G~rp----y-----d~~~~srNn~~vallt~GEGwHNnHHaFP~sar~G~~w~~~D~ 350 (382)
|.....-..|.+=-+.|. +-..+ | ++.++-....+..++..|-++|=-||-||.--|+-+. -+
T Consensus 310 r~~~~~~s~~v~l~~nH~~~~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghln~qieHHLFPtmpr~nL~----~v 385 (430)
T KOG4232|consen 310 RFLFSSWSFWVTLTMNHIDPEIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHLNFQIEHHLFPTMPRHNLN----KV 385 (430)
T ss_pred HHHHHHHHHHHHHhhhccchhhccCCcchhhHHHHHHhhccccCchhHHHHHHhhhhhhHHhhcCCCCCccchH----HH
Confidence 665554444444133443 11122 1 1112223446677777799999999999998887644 56
Q ss_pred hHHHHHHHHHhCcccccC
Q 016803 351 TWYVVRFLQAVGLATDVK 368 (382)
Q Consensus 351 t~~~I~~l~~LGLA~dlK 368 (382)
.-.+..+|++-|+.|..+
T Consensus 386 ~P~Vke~c~k~~l~y~~~ 403 (430)
T KOG4232|consen 386 APLVKELCKKHGLPYREK 403 (430)
T ss_pred HHHHHHHHHHcCCccccc
Confidence 678888899988888765
No 25
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=82.24 E-value=0.2 Score=46.09 Aligned_cols=40 Identities=10% Similarity=-0.345 Sum_probs=36.9
Q ss_pred CCCcchHHHHHHHhcCCCccCccccccccccCCCcccccchH
Q 016803 311 DLSRNNWWVALLAFGEGWHNNHHAFEYSARHGLEWWQVDLTW 352 (382)
Q Consensus 311 ~~srNn~~vallt~GEGwHNnHHaFP~sar~G~~w~~~D~t~ 352 (382)
.++++++...+-+.||| ||||++|-+++.+.+|++.|.+.
T Consensus 2 ~s~~~~~~~~l~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~ 41 (164)
T COG5274 2 ASKTSEKCVILSDGPKY--TNKLYAGKDHAALDWDSLVQEHA 41 (164)
T ss_pred CcccccceEEEeecCCc--ceeeecCccHHHHhHHHhhcchh
Confidence 35788888899999999 99999999999999999999998
No 26
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=63.42 E-value=53 Score=32.41 Aligned_cols=37 Identities=16% Similarity=0.461 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCCC
Q 016803 171 PKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSE 207 (382)
Q Consensus 171 ~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDTd 207 (382)
-+||-++++++|-+-+..+.+.+++.-|+--+++-++
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i~YikVrrm~~~~s~~~ 258 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFINYIKVRRMEEKYSNQS 258 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHhccc
Confidence 4899999999999999999999999999888777665
No 27
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=57.35 E-value=24 Score=32.33 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHhhhhcchhh
Q 016803 136 TWSSLRVAFGLYVVTGLLGITLSF 159 (382)
Q Consensus 136 ~w~tl~~~~~ly~ltg~lGIT~G~ 159 (382)
.|.+++..++++.++- +||+.|.
T Consensus 96 ~~~~~~~S~~~Fg~gl-lGisYGi 118 (153)
T PF11947_consen 96 PWAVLLVSLVFFGLGL-LGISYGI 118 (153)
T ss_pred chHHHHHHHHHHHHHH-Hhhhhhh
Confidence 4777777777777755 9999864
No 28
>PRK05470 fumarate reductase subunit D; Provisional
Probab=56.85 E-value=15 Score=32.33 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=28.2
Q ss_pred chhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCC
Q 016803 156 TLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCD 205 (382)
Q Consensus 156 T~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sD 205 (382)
..+|.|..+ |-.+..-+.++..+-.+. -|...||.||--=|
T Consensus 48 a~sy~~i~a---Fa~s~iG~l~ll~~i~lp------lWh~~HRihHglHD 88 (118)
T PRK05470 48 ALSYERVLA---FAQSFIGKLFLLLMIVLP------LWCGLHRIHHGMHD 88 (118)
T ss_pred ccCHHHHHH---HHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 577888854 777766676664333332 39999999998755
No 29
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=50.92 E-value=34 Score=32.06 Aligned_cols=47 Identities=32% Similarity=0.561 Sum_probs=29.8
Q ss_pred hhcchhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCCCCCCCCCC
Q 016803 153 LGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPI 214 (382)
Q Consensus 153 lGIT~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDTd~DPHsp~ 214 (382)
..+|--.|+. ||.....+++++++ +.....-|+ +.||.||+ .||+.+
T Consensus 95 v~~tnq~HkW-sH~~~~~P~~V~~L----Q~~gillsr----~~H~~HH~------aPh~~~ 141 (178)
T PF10520_consen 95 VAFTNQFHKW-SHTYKSLPPWVRFL----QDAGILLSR----KHHRIHHV------APHDTN 141 (178)
T ss_pred HHHHHHHHHH-HcCCCCCCHHHHHH----HHCCcccCc----hhhhcccc------CcccCC
Confidence 3445558886 99988866666654 333333343 46899997 466665
No 30
>PLN02601 beta-carotene hydroxylase
Probab=45.72 E-value=41 Score=33.74 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=16.8
Q ss_pred CCCCCCCCCcchHHHHHHHhcCCCccCccc
Q 016803 305 QAWNTGDLSRNNWWVALLAFGEGWHNNHHA 334 (382)
Q Consensus 305 rpyd~~~~srNn~~vallt~GEGwHNnHHa 334 (382)
|.|.....++|-.+-.+.. -|.-||+
T Consensus 234 qRfp~~~~a~~~Y~rrl~~----AHklHHa 259 (303)
T PLN02601 234 KRFPVGPIANVPYLRKVAA----AHQLHHT 259 (303)
T ss_pred cccccCCCCCCHHHHHHHH----HHHhhcc
Confidence 4444444566666666654 5899999
No 31
>cd00547 QFR_TypeD_subunitD Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=45.07 E-value=29 Score=30.42 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=29.4
Q ss_pred chhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCCC
Q 016803 156 TLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDS 206 (382)
Q Consensus 156 T~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sDT 206 (382)
..+|.|..+ |-.+..-+.++..+-.+. -|...||.||--=|=
T Consensus 44 a~~y~~i~a---Fa~s~iG~l~ll~~i~lp------lWh~~HRihh~lHDl 85 (115)
T cd00547 44 ALSYDRIIA---FAQSWIGKLFLLVLIILP------MWHAMHRIHHGLHDL 85 (115)
T ss_pred ccCHHHHHH---HHHhHHHHHHHHHHHHHH------HHHHHHHHHHhhhcc
Confidence 678999855 777766666654333332 399999999987773
No 32
>PLN02953 phosphatidate cytidylyltransferase
Probab=29.24 E-value=1.5e+02 Score=31.35 Aligned_cols=32 Identities=6% Similarity=0.090 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhccccc----cCCCCCCCCCCCc
Q 016803 282 GVRIVWVYHITWLVNSACHV----WGKQAWNTGDLSR 314 (382)
Q Consensus 282 ~lR~~l~~h~tw~VNS~aH~----~G~rpyd~~~~sr 314 (382)
.....+++-++|.-...+.. +|.++-. .++|.
T Consensus 268 l~~~l~~~~~vw~~Di~AY~~G~~fGk~kl~-~ISPk 303 (403)
T PLN02953 268 LVATLISFSGVIATDTFAFLGGKAFGRTPLT-SISPK 303 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-cCCCC
Confidence 34444555567777777665 4555654 45554
No 33
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=28.10 E-value=1.3e+02 Score=30.02 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.5
Q ss_pred CccCccccccccc
Q 016803 328 WHNNHHAFEYSAR 340 (382)
Q Consensus 328 wHNnHHaFP~sar 340 (382)
.||.||+++...+
T Consensus 100 ~H~~HH~~~n~~~ 112 (289)
T cd03508 100 YHLEHHRYLGEDG 112 (289)
T ss_pred HHHHhccCCCCCC
Confidence 4999999988544
No 34
>PLN02601 beta-carotene hydroxylase
Probab=24.38 E-value=1.5e+02 Score=29.90 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=21.5
Q ss_pred hhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhcc
Q 016803 158 SFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQ 202 (382)
Q Consensus 158 G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk 202 (382)
-.|-.+.||-|+..+-- -.+=...=++-|+.||+
T Consensus 226 fVHDgLVHqRfp~~~~a-----------~~~Y~rrl~~AHklHHa 259 (303)
T PLN02601 226 FVHDGLVHKRFPVGPIA-----------NVPYLRKVAAAHQLHHT 259 (303)
T ss_pred HHhhhhhccccccCCCC-----------CCHHHHHHHHHHHhhcc
Confidence 47999999998765221 11111223467999999
No 35
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=23.77 E-value=75 Score=31.04 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=12.7
Q ss_pred cCCCccCccccc-cccccC
Q 016803 325 GEGWHNNHHAFE-YSARHG 342 (382)
Q Consensus 325 GEGwHNnHHaFP-~sar~G 342 (382)
+-.+|.-||..- .+..+|
T Consensus 203 ~p~~H~lHH~~~~~~~Nyg 221 (271)
T COG3000 203 TPRHHRLHHSKDPYDKNYG 221 (271)
T ss_pred CchHHHHhccCCCCCCcch
Confidence 455899999876 555555
No 36
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=21.41 E-value=1.1e+02 Score=22.93 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHHhhhhcchhhhhhc
Q 016803 135 FTWSSLRVAFGLYVVTGLLGITLSFHRNL 163 (382)
Q Consensus 135 ~~w~tl~~~~~ly~ltg~lGIT~G~HRl~ 163 (382)
.+|...++++..-+++++.|-++ .||++
T Consensus 5 v~~~~yl~~~~~s~~sM~aGA~v-VH~~y 32 (47)
T PF14990_consen 5 VSWPSYLKSLVASLLSMLAGASV-VHNIY 32 (47)
T ss_pred CcHHHHHHHHHHHHHHHHhhhHH-HHHHh
Confidence 57888888888888888778887 77764
Done!