Query 016803
Match_columns 382
No_of_seqs 207 out of 1158
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 04:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8d_A Myosin-VI; myosin VI, m 12.7 24 0.00083 30.4 -1.6 20 204-223 25-44 (141)
2 2hzs_I RNA polymerase II media 9.7 2.3E+02 0.0078 17.5 2.5 9 325-333 19-27 (27)
3 1kf6_D Fumarate reductase 13 k 7.8 1E+02 0.0035 26.0 0.5 41 156-205 49-89 (119)
4 3gv0_A Transcriptional regulat 6.1 1.2E+02 0.004 26.9 0.0 12 322-333 277-288 (288)
5 1xmp_A PURE, phosphoribosylami 6.0 1.9E+02 0.0064 25.8 1.3 47 325-372 1-48 (170)
6 2i9f_A Nucleocapsid; assembly, 5.0 3.2E+02 0.011 20.2 1.7 51 329-379 3-63 (69)
7 2kta_A Putative helicase; PSI, 4.7 3.1E+02 0.011 20.8 1.6 19 350-368 50-68 (74)
8 3l4f_D SH3 and multiple ankyri 4.4 2.3E+02 0.008 23.0 0.8 19 196-214 4-24 (132)
9 2byg_A Channel associated prot 4.1 1.9E+02 0.0065 22.9 0.0 15 200-214 5-19 (117)
10 3u7d_B Protein HEG homolog 1; 4.1 2.4E+02 0.0082 17.4 0.4 8 34-41 9-16 (26)
No 1
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=12.67 E-value=24 Score=30.43 Aligned_cols=20 Identities=30% Similarity=0.949 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCchhhhhhh
Q 016803 204 CDSERDPHSPIEGFWFSHMS 223 (382)
Q Consensus 204 sDTd~DPHsp~rGF~~sH~G 223 (382)
+|..+||.++++|+||+|+-
T Consensus 25 ~~~~k~~~~~k~G~WYAHFd 44 (141)
T 3h8d_A 25 ADQYKDPQNKKKGWWYAHFD 44 (141)
T ss_dssp GGTTSCGGGCCEEEEEEEEE
T ss_pred cccccCCCCcccceEEEeeC
Confidence 56777888899999999975
No 2
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=9.68 E-value=2.3e+02 Score=17.54 Aligned_cols=9 Identities=56% Similarity=1.062 Sum_probs=5.8
Q ss_pred cCCCccCcc
Q 016803 325 GEGWHNNHH 333 (382)
Q Consensus 325 GEGwHNnHH 333 (382)
||--|..||
T Consensus 19 gekhhhhhh 27 (27)
T 2hzs_I 19 GEKHHHHHH 27 (27)
T ss_dssp CCCCSSCCC
T ss_pred ccccccccC
Confidence 886665554
No 3
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=7.79 E-value=1e+02 Score=26.03 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=25.4
Q ss_pred chhhhhhcCCCCCCCChHHHHHHHHHhHhhccCchhhhhhhhhhhccCCC
Q 016803 156 TLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCD 205 (382)
Q Consensus 156 T~G~HRl~sHRSfka~~~l~~~L~~~gtlA~Qgs~~~Wv~~HR~HHk~sD 205 (382)
+.+|.|.. +|-.++.-+.++...-.+ --|...||.||---|
T Consensus 49 ~lsY~~~~---aFa~s~ig~l~ll~~i~l------plWh~~HRihh~lHD 89 (119)
T 1kf6_D 49 ALSYERVL---AFAQSFIGRVFLFLMIVL------PLWCGLHRMHHAMHD 89 (119)
T ss_dssp TTSHHHHH---HHHTSHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred cccHHHHH---HHHhcHHHHHHHHHHHHH------HHHHHHHHHHHhhhh
Confidence 34677763 455565556555333222 239999999997666
No 4
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=6.06 E-value=1.2e+02 Score=26.91 Aligned_cols=12 Identities=50% Similarity=0.836 Sum_probs=0.0
Q ss_pred HHhcCCCccCcc
Q 016803 322 LAFGEGWHNNHH 333 (382)
Q Consensus 322 lt~GEGwHNnHH 333 (382)
..-|||||..||
T Consensus 277 ~~~~~~~~~~~~ 288 (288)
T 3gv0_A 277 MAPKEGHHHHHH 288 (288)
T ss_dssp ------------
T ss_pred cCCcccccccCC
Confidence 355999998887
No 5
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=6.04 E-value=1.9e+02 Score=25.79 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=26.2
Q ss_pred cCCCccCcccccccc-ccCCCcccccchHHHHHHHHHhCcccccCCCCH
Q 016803 325 GEGWHNNHHAFEYSA-RHGLEWWQVDLTWYVVRFLQAVGLATDVKLPSE 372 (382)
Q Consensus 325 GEGwHNnHHaFP~sa-r~G~~w~~~D~t~~~I~~l~~LGLA~dlK~~s~ 372 (382)
|..-|..||.-|.-+ -.|-. -.++...-....|+.+|.-+|++..+.
T Consensus 1 ~~~~~~~~~~~~~V~IimGS~-SD~~v~~~a~~~L~~~Gi~~dv~V~Sa 48 (170)
T 1xmp_A 1 GSSHHHHHHMKSLVGVIMGST-SDWETMKYACDILDELNIPYEKKVVSA 48 (170)
T ss_dssp ----------CCSEEEEESSG-GGHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCccccccCCCcEEEEECcH-HHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 445677888888743 23322 145666688899999999999987664
No 6
>2i9f_A Nucleocapsid; assembly, viral protein; 2.00A {Equine arteritis virus} SCOP: d.254.1.1
Probab=5.00 E-value=3.2e+02 Score=20.18 Aligned_cols=51 Identities=33% Similarity=0.357 Sum_probs=29.8
Q ss_pred ccCccccccccccCCCccc-ccchHHHHHHHH---------HhCcccccCCCCHHHHhhhh
Q 016803 329 HNNHHAFEYSARHGLEWWQ-VDLTWYVVRFLQ---------AVGLATDVKLPSETQKQRMT 379 (382)
Q Consensus 329 HNnHHaFP~sar~G~~w~~-~D~t~~~I~~l~---------~LGLA~dlK~~s~~~~~~~~ 379 (382)
|..||--|.|-|+.+.--| -.++.-+-|+|- +=||.|-+..++..|++|+-
T Consensus 3 hhhhhhepgdlrhdlnqqeratlssnvqrffmighgsltadaggltytvswvptkqiqrkv 63 (69)
T 2i9f_A 3 HHHHHHEPGDLRHDLNQQERATLSSNVQRFFMIGHGSLTADAGGLTYTVSWVPTKQIQRKV 63 (69)
T ss_dssp ---CCCCCSSGGGGCCHHHHHHHHHHHHHHHHTTCSEEEECSSSEEEEEEECCCHHHHHHH
T ss_pred cccccCCCccccchhhHHHHHHHhhhhhheeeecccceeecCCCcEEEEEeeeHHHhhhhc
Confidence 5567777888887754111 123334444442 34788888877788887763
No 7
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=4.67 E-value=3.1e+02 Score=20.83 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=15.6
Q ss_pred chHHHHHHHHHhCcccccC
Q 016803 350 LTWYVVRFLQAVGLATDVK 368 (382)
Q Consensus 350 ~t~~~I~~l~~LGLA~dlK 368 (382)
++--=|..|+.||.+|+|.
T Consensus 50 Ls~eRi~~L~~lGf~w~~~ 68 (74)
T 2kta_A 50 LPNDRRLLLDKIGFVWSLE 68 (74)
T ss_dssp CCHHHHHHHHHHTCCCCCC
T ss_pred CCHHHHHHHHHcCCEeccc
Confidence 5566688999999999985
No 8
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=4.42 E-value=2.3e+02 Score=22.96 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=4.9
Q ss_pred hhhhhccCCC--CCCCCCCCC
Q 016803 196 THRYHHQFCD--SERDPHSPI 214 (382)
Q Consensus 196 ~HR~HHk~sD--Td~DPHsp~ 214 (382)
.|..||.+.+ ...||||+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~s~~ 24 (132)
T 3l4f_D 4 SHHHHHHSQDPLVPRGSGSDY 24 (132)
T ss_dssp ---------------CCSCCC
T ss_pred chhhhhhhcCCCccCCCCCCc
Confidence 4667777777 578888885
No 9
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=4.13 E-value=1.9e+02 Score=22.89 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=0.0
Q ss_pred hccCCCCCCCCCCCC
Q 016803 200 HHQFCDSERDPHSPI 214 (382)
Q Consensus 200 HHk~sDTd~DPHsp~ 214 (382)
||--.+.+.||||-.
T Consensus 5 ~~~~~~~~~dp~s~y 19 (117)
T 2byg_A 5 HHHSSGVDLGTENLY 19 (117)
T ss_dssp ---------------
T ss_pred ccccCccCCCCcccc
Confidence 333344689999976
No 10
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=4.10 E-value=2.4e+02 Score=17.43 Aligned_cols=8 Identities=25% Similarity=0.206 Sum_probs=5.5
Q ss_pred ccCccccc
Q 016803 34 GNSNLQHK 41 (382)
Q Consensus 34 ~~~~~~~~ 41 (382)
|+|||.|+
T Consensus 9 gqynpsfi 16 (26)
T 3u7d_B 9 GQYNPSFI 16 (26)
T ss_pred CccCcccc
Confidence 67777664
Done!