Query 016804
Match_columns 382
No_of_seqs 359 out of 2688
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:58:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 5.2E-68 1.1E-72 490.3 25.6 237 90-374 1-238 (240)
2 COG1127 Ttg2A ABC-type transpo 100.0 1.4E-64 3.1E-69 473.5 25.2 247 89-381 6-254 (263)
3 COG1135 AbcC ABC-type metal io 100.0 6.4E-62 1.4E-66 469.4 25.3 239 91-376 1-246 (339)
4 COG1125 OpuBA ABC-type proline 100.0 9.7E-62 2.1E-66 457.4 22.6 236 91-375 1-239 (309)
5 COG3842 PotA ABC-type spermidi 100.0 2.6E-61 5.6E-66 478.3 23.8 235 90-374 4-239 (352)
6 COG3839 MalK ABC-type sugar tr 100.0 1.4E-59 3E-64 463.7 25.5 232 91-373 3-235 (338)
7 COG1116 TauB ABC-type nitrate/ 100.0 1.3E-59 2.8E-64 443.4 23.5 220 90-333 2-222 (248)
8 COG1120 FepC ABC-type cobalami 100.0 3.1E-58 6.7E-63 439.4 22.4 233 91-373 2-237 (258)
9 COG1117 PstB ABC-type phosphat 100.0 4E-58 8.6E-63 423.7 22.1 238 89-376 5-252 (253)
10 COG1118 CysA ABC-type sulfate/ 100.0 1.7E-57 3.6E-62 438.1 19.5 234 90-373 1-239 (345)
11 COG1136 SalX ABC-type antimicr 100.0 3.2E-56 6.9E-61 418.1 25.9 205 91-313 1-212 (226)
12 TIGR02314 ABC_MetN D-methionin 100.0 1.2E-55 2.7E-60 439.4 29.7 236 91-374 1-243 (343)
13 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.4E-56 1.6E-60 421.5 24.0 219 90-362 3-227 (254)
14 COG3638 ABC-type phosphate/pho 100.0 4.5E-56 9.7E-61 415.3 22.0 226 90-361 2-236 (258)
15 COG1124 DppF ABC-type dipeptid 100.0 1.2E-55 2.5E-60 414.4 24.7 236 90-375 2-245 (252)
16 cd03261 ABC_Org_Solvent_Resist 100.0 3.2E-55 7E-60 412.0 27.8 232 92-370 1-234 (235)
17 PRK11650 ugpC glycerol-3-phosp 100.0 3E-55 6.5E-60 438.6 29.2 231 91-373 3-236 (356)
18 PRK11432 fbpC ferric transport 100.0 4.6E-55 9.9E-60 436.6 30.1 232 90-373 5-238 (351)
19 TIGR03265 PhnT2 putative 2-ami 100.0 5.5E-55 1.2E-59 436.3 29.8 232 90-373 3-236 (353)
20 COG2884 FtsE Predicted ATPase 100.0 6.7E-56 1.5E-60 402.5 21.0 217 91-355 1-219 (223)
21 PRK09452 potA putrescine/sperm 100.0 1.1E-54 2.4E-59 437.2 29.9 236 86-373 9-246 (375)
22 TIGR03258 PhnT 2-aminoethylpho 100.0 2.5E-54 5.4E-59 432.9 29.6 230 92-373 6-240 (362)
23 PRK10851 sulfate/thiosulfate t 100.0 3.4E-54 7.4E-59 430.6 29.8 232 91-373 2-238 (353)
24 COG1122 CbiO ABC-type cobalt t 100.0 1.8E-54 3.9E-59 410.4 24.0 224 90-362 2-228 (235)
25 PRK11607 potG putrescine trans 100.0 1.1E-53 2.4E-58 430.2 30.5 234 89-373 17-251 (377)
26 COG4175 ProV ABC-type proline/ 100.0 6.8E-55 1.5E-59 421.1 20.2 237 91-374 4-267 (386)
27 PRK13537 nodulation ABC transp 100.0 8.1E-54 1.8E-58 419.9 28.1 221 90-361 6-226 (306)
28 PRK15079 oligopeptide ABC tran 100.0 1.7E-53 3.7E-58 422.1 30.0 240 88-374 5-264 (331)
29 COG3840 ThiQ ABC-type thiamine 100.0 3.2E-54 6.9E-59 389.6 21.2 221 91-364 1-221 (231)
30 PRK11000 maltose/maltodextrin 100.0 2.8E-53 6.2E-58 426.1 29.8 231 91-373 3-235 (369)
31 COG1131 CcmA ABC-type multidru 100.0 1.5E-53 3.2E-58 416.1 26.4 220 91-360 4-224 (293)
32 PRK09493 glnQ glutamine ABC tr 100.0 5E-53 1.1E-57 398.3 28.8 236 91-373 1-237 (240)
33 COG0411 LivG ABC-type branched 100.0 3.7E-54 8E-59 404.3 20.3 236 90-374 3-249 (250)
34 PRK11831 putative ABC transpor 100.0 8.6E-53 1.9E-57 404.6 30.0 237 90-373 6-244 (269)
35 PRK11153 metN DL-methionine tr 100.0 6.9E-53 1.5E-57 419.4 30.4 236 91-374 1-243 (343)
36 cd03296 ABC_CysA_sulfate_impor 100.0 8.6E-53 1.9E-57 396.9 29.4 231 91-372 2-237 (239)
37 PRK11308 dppF dipeptide transp 100.0 9.7E-53 2.1E-57 416.1 30.4 239 89-374 3-257 (327)
38 cd03219 ABC_Mj1267_LivG_branch 100.0 5.3E-53 1.1E-57 396.5 27.0 222 92-361 1-231 (236)
39 PRK13536 nodulation factor exp 100.0 8.2E-53 1.8E-57 418.7 29.3 224 87-361 37-260 (340)
40 PRK11264 putative amino-acid A 100.0 1.2E-52 2.6E-57 397.7 28.7 237 91-374 3-246 (250)
41 TIGR00960 3a0501s02 Type II (G 100.0 5.8E-53 1.3E-57 391.6 25.5 205 91-313 1-208 (216)
42 TIGR01186 proV glycine betaine 100.0 6.2E-53 1.3E-57 422.8 27.2 228 99-374 1-232 (363)
43 TIGR00972 3a0107s01c2 phosphat 100.0 2.3E-52 5E-57 395.7 29.5 235 91-374 1-245 (247)
44 TIGR01288 nodI ATP-binding ABC 100.0 1.2E-52 2.5E-57 410.5 28.0 222 89-361 2-223 (303)
45 cd03259 ABC_Carb_Solutes_like 100.0 1E-52 2.2E-57 389.2 26.0 212 92-355 1-213 (213)
46 PRK10619 histidine/lysine/argi 100.0 3.5E-52 7.6E-57 397.0 30.4 240 90-376 4-256 (257)
47 cd03265 ABC_DrrA DrrA is the A 100.0 1.4E-52 3E-57 390.5 26.9 217 92-359 1-218 (220)
48 cd03258 ABC_MetN_methionine_tr 100.0 1.6E-52 3.5E-57 392.8 26.8 223 91-361 1-229 (233)
49 PRK11022 dppD dipeptide transp 100.0 2.7E-52 5.9E-57 412.6 29.7 236 91-373 3-255 (326)
50 cd03218 ABC_YhbG The ABC trans 100.0 2.6E-52 5.6E-57 390.9 27.9 221 92-361 1-221 (232)
51 PRK09473 oppD oligopeptide tra 100.0 3.7E-52 8E-57 412.4 30.5 238 89-373 10-263 (330)
52 TIGR02769 nickel_nikE nickel i 100.0 3.7E-52 7.9E-57 399.1 29.2 236 91-373 2-251 (265)
53 PRK11124 artP arginine transpo 100.0 4.5E-52 9.7E-57 392.3 29.0 235 91-372 2-240 (242)
54 cd03260 ABC_PstB_phosphate_tra 100.0 2.5E-52 5.5E-57 390.1 26.1 219 92-359 1-226 (227)
55 COG0444 DppD ABC-type dipeptid 100.0 2.1E-52 4.6E-57 406.3 26.5 238 91-374 1-256 (316)
56 PRK10070 glycine betaine trans 100.0 4.8E-52 1E-56 421.0 29.5 236 91-374 4-267 (400)
57 PRK09536 btuD corrinoid ABC tr 100.0 4.3E-52 9.3E-57 421.6 28.9 224 90-362 2-228 (402)
58 cd03301 ABC_MalK_N The N-termi 100.0 5.2E-52 1.1E-56 384.1 26.9 212 92-355 1-213 (213)
59 PRK13637 cbiO cobalt transport 100.0 5.3E-52 1.2E-56 403.2 28.3 222 91-361 2-233 (287)
60 COG4555 NatA ABC-type Na+ tran 100.0 2.1E-53 4.7E-58 389.3 17.3 220 91-361 1-221 (245)
61 cd03266 ABC_NatA_sodium_export 100.0 3.6E-52 7.7E-57 386.4 25.6 214 91-355 1-218 (218)
62 cd03224 ABC_TM1139_LivF_branch 100.0 3.6E-52 7.9E-57 387.0 25.2 219 92-361 1-220 (222)
63 cd03256 ABC_PhnC_transporter A 100.0 4.3E-52 9.4E-57 391.0 25.6 223 92-361 1-233 (241)
64 COG4598 HisP ABC-type histidin 100.0 2.1E-53 4.6E-58 383.9 15.9 237 90-373 5-253 (256)
65 TIGR02315 ABC_phnC phosphonate 100.0 2.8E-52 6E-57 393.2 24.3 223 91-360 1-233 (243)
66 PRK15093 antimicrobial peptide 100.0 9.8E-52 2.1E-56 409.1 29.3 238 90-374 2-261 (330)
67 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.2E-51 2.6E-56 389.7 28.5 232 92-373 1-237 (242)
68 TIGR03005 ectoine_ehuA ectoine 100.0 1.1E-51 2.5E-56 392.1 28.5 236 92-374 1-249 (252)
69 PRK14273 phosphate ABC transpo 100.0 1.4E-51 2.9E-56 392.0 28.7 237 89-374 5-251 (254)
70 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.3E-51 2.7E-56 384.0 27.8 211 92-357 1-218 (220)
71 TIGR03411 urea_trans_UrtD urea 100.0 1.9E-51 4.2E-56 387.6 28.8 224 90-362 1-231 (242)
72 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.4E-52 1.4E-56 384.7 24.9 203 92-313 1-210 (218)
73 cd03262 ABC_HisP_GlnQ_permease 100.0 8.8E-52 1.9E-56 382.1 25.7 205 92-313 1-205 (213)
74 cd03263 ABC_subfamily_A The AB 100.0 7.7E-52 1.7E-56 384.7 25.4 217 92-360 1-219 (220)
75 PRK10895 lipopolysaccharide AB 100.0 1E-51 2.3E-56 389.6 26.6 224 91-362 3-226 (241)
76 PRK14242 phosphate transporter 100.0 2.7E-51 5.9E-56 389.4 29.5 236 89-373 4-249 (253)
77 PRK11629 lolD lipoprotein tran 100.0 2.6E-51 5.6E-56 385.4 28.9 218 90-356 4-228 (233)
78 PRK14268 phosphate ABC transpo 100.0 3.3E-51 7.2E-56 390.8 30.2 236 89-374 10-255 (258)
79 PRK13647 cbiO cobalt transport 100.0 1.4E-51 3E-56 397.7 27.4 221 90-360 3-225 (274)
80 COG1137 YhbG ABC-type (unclass 100.0 3E-53 6.4E-58 388.0 14.1 235 90-374 3-238 (243)
81 TIGR02673 FtsE cell division A 100.0 1.5E-51 3.2E-56 381.3 25.6 205 91-313 1-207 (214)
82 PRK13634 cbiO cobalt transport 100.0 2E-51 4.4E-56 399.6 27.6 221 92-361 3-234 (290)
83 TIGR03522 GldA_ABC_ATP gliding 100.0 1.8E-51 3.9E-56 401.9 27.2 219 91-361 2-220 (301)
84 PRK13643 cbiO cobalt transport 100.0 2.3E-51 4.9E-56 399.0 27.6 223 91-362 1-233 (288)
85 PRK11300 livG leucine/isoleuci 100.0 2.7E-51 5.8E-56 389.5 27.4 225 90-362 4-243 (255)
86 cd03268 ABC_BcrA_bacitracin_re 100.0 1.2E-51 2.7E-56 380.6 24.3 208 92-355 1-208 (208)
87 PRK10908 cell division protein 100.0 3E-51 6.5E-56 382.0 26.9 205 91-313 1-207 (222)
88 cd03269 ABC_putative_ATPase Th 100.0 2.1E-51 4.6E-56 379.6 25.6 210 92-355 1-210 (210)
89 PRK13651 cobalt transporter AT 100.0 2.3E-51 4.9E-56 402.7 27.3 223 91-362 2-254 (305)
90 cd03264 ABC_drug_resistance_li 100.0 1.9E-51 4.1E-56 380.2 25.2 211 92-355 1-211 (211)
91 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.8E-51 3.9E-56 395.7 25.9 233 93-373 26-262 (269)
92 PRK14247 phosphate ABC transpo 100.0 6.1E-51 1.3E-55 386.3 29.0 235 91-375 3-248 (250)
93 cd03292 ABC_FtsE_transporter F 100.0 2.6E-51 5.7E-56 379.2 25.5 204 92-313 1-206 (214)
94 PRK10744 pstB phosphate transp 100.0 7.7E-51 1.7E-55 388.7 29.3 236 90-374 12-257 (260)
95 PRK13631 cbiO cobalt transport 100.0 4.8E-51 1E-55 402.9 28.7 227 87-362 17-265 (320)
96 PRK13650 cbiO cobalt transport 100.0 3.2E-51 7E-56 396.0 26.8 222 90-362 3-229 (279)
97 cd03257 ABC_NikE_OppD_transpor 100.0 4.6E-51 9.9E-56 380.6 26.8 218 91-355 1-228 (228)
98 PRK11614 livF leucine/isoleuci 100.0 3E-51 6.6E-56 385.5 25.8 222 90-362 4-226 (237)
99 PRK14267 phosphate ABC transpo 100.0 7.8E-51 1.7E-55 386.2 28.7 236 90-374 3-250 (253)
100 PRK14256 phosphate ABC transpo 100.0 1.1E-50 2.4E-55 385.3 29.7 237 91-375 4-250 (252)
101 PRK14250 phosphate ABC transpo 100.0 4.7E-51 1E-55 386.1 26.9 231 91-376 3-236 (241)
102 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.3E-51 1.6E-55 383.0 28.1 220 91-362 1-221 (236)
103 TIGR01188 drrA daunorubicin re 100.0 2.1E-51 4.5E-56 401.5 25.1 212 99-361 1-212 (302)
104 PRK15112 antimicrobial peptide 100.0 7.7E-51 1.7E-55 390.6 28.3 237 89-374 2-252 (267)
105 COG1123 ATPase components of v 100.0 2.4E-51 5.1E-56 423.5 26.5 240 88-374 277-532 (539)
106 PRK14274 phosphate ABC transpo 100.0 1.3E-50 2.7E-55 386.7 29.5 237 89-374 10-256 (259)
107 PRK13638 cbiO cobalt transport 100.0 4.1E-51 8.9E-56 393.0 26.2 224 91-362 1-225 (271)
108 PRK14270 phosphate ABC transpo 100.0 1.3E-50 2.9E-55 384.5 29.4 237 90-375 3-249 (251)
109 PRK13636 cbiO cobalt transport 100.0 7.4E-51 1.6E-55 394.3 28.2 224 90-362 4-231 (283)
110 PRK13641 cbiO cobalt transport 100.0 7.1E-51 1.5E-55 395.1 27.9 222 91-361 2-233 (287)
111 TIGR02211 LolD_lipo_ex lipopro 100.0 6.5E-51 1.4E-55 378.7 26.5 204 91-313 1-211 (221)
112 PRK14248 phosphate ABC transpo 100.0 1.3E-50 2.8E-55 388.7 29.4 239 87-374 17-265 (268)
113 PRK14245 phosphate ABC transpo 100.0 1.7E-50 3.7E-55 383.6 29.4 236 90-374 2-247 (250)
114 PRK13646 cbiO cobalt transport 100.0 7.1E-51 1.5E-55 394.9 27.2 223 91-362 2-235 (286)
115 PRK10575 iron-hydroxamate tran 100.0 7.1E-51 1.5E-55 390.2 26.8 225 89-362 9-237 (265)
116 PRK11231 fecE iron-dicitrate t 100.0 8E-51 1.7E-55 387.2 27.0 231 91-372 2-235 (255)
117 PRK13548 hmuV hemin importer A 100.0 9.4E-51 2E-55 388.2 27.6 228 91-362 2-230 (258)
118 PRK10584 putative ABC transpor 100.0 1.4E-50 3.1E-55 378.5 27.9 216 90-354 5-227 (228)
119 PRK14241 phosphate transporter 100.0 1.7E-50 3.8E-55 385.5 29.1 236 91-374 4-255 (258)
120 PRK11701 phnK phosphonate C-P 100.0 1.8E-50 3.9E-55 385.4 28.9 237 90-373 5-253 (258)
121 cd03226 ABC_cobalt_CbiO_domain 100.0 2.7E-51 5.8E-56 378.0 22.3 194 93-313 1-196 (205)
122 TIGR01978 sufC FeS assembly AT 100.0 1.3E-50 2.8E-55 381.4 27.1 222 92-361 1-233 (243)
123 PRK11248 tauB taurine transpor 100.0 2E-50 4.3E-55 385.8 28.6 212 91-357 1-215 (255)
124 COG0410 LivF ABC-type branched 100.0 6.6E-51 1.4E-55 379.8 24.6 232 90-372 2-234 (237)
125 PRK14235 phosphate transporter 100.0 3.4E-50 7.4E-55 386.1 30.0 238 88-374 16-264 (267)
126 PRK14239 phosphate transporter 100.0 3E-50 6.5E-55 381.7 29.2 236 90-374 4-249 (252)
127 PRK13644 cbiO cobalt transport 100.0 1.4E-50 3.1E-55 390.6 27.2 221 91-361 1-223 (274)
128 cd03225 ABC_cobalt_CbiO_domain 100.0 8.7E-51 1.9E-55 375.4 24.6 201 93-313 1-204 (211)
129 TIGR03415 ABC_choXWV_ATP choli 100.0 5.6E-51 1.2E-55 410.9 25.3 232 95-374 28-267 (382)
130 PRK13639 cbiO cobalt transport 100.0 1.9E-50 4.2E-55 389.7 27.7 223 91-362 1-226 (275)
131 TIGR03410 urea_trans_UrtE urea 100.0 1.2E-50 2.5E-55 379.6 24.8 217 92-360 1-219 (230)
132 PRK14269 phosphate ABC transpo 100.0 3.6E-50 7.8E-55 380.8 28.2 233 91-374 2-243 (246)
133 COG2274 SunT ABC-type bacterio 100.0 4.9E-51 1.1E-55 437.3 24.9 281 4-367 407-701 (709)
134 PRK13652 cbiO cobalt transport 100.0 3.3E-50 7.1E-55 388.4 28.1 220 91-361 3-226 (277)
135 PRK09984 phosphonate/organopho 100.0 2.8E-50 6E-55 384.9 27.3 235 90-374 3-251 (262)
136 PRK14240 phosphate transporter 100.0 5.3E-50 1.2E-54 379.9 29.0 235 91-374 3-247 (250)
137 PRK14251 phosphate ABC transpo 100.0 5.4E-50 1.2E-54 380.0 29.1 236 90-374 3-248 (251)
138 PRK14272 phosphate ABC transpo 100.0 6.7E-50 1.4E-54 379.3 29.4 238 90-375 3-250 (252)
139 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.6E-50 5.6E-55 372.6 25.8 210 92-355 1-211 (211)
140 PRK11144 modC molybdate transp 100.0 2.2E-50 4.8E-55 402.8 27.1 225 91-372 1-229 (352)
141 PRK13635 cbiO cobalt transport 100.0 3E-50 6.4E-55 389.5 27.2 221 90-361 4-228 (279)
142 PRK10253 iron-enterobactin tra 100.0 2.8E-50 6.2E-55 386.0 26.5 225 89-362 5-233 (265)
143 PRK10419 nikE nickel transport 100.0 8.4E-50 1.8E-54 383.9 29.7 237 91-374 3-253 (268)
144 TIGR02323 CP_lyasePhnK phospho 100.0 5.4E-50 1.2E-54 380.5 28.0 238 90-374 2-251 (253)
145 PRK14262 phosphate ABC transpo 100.0 8.7E-50 1.9E-54 378.4 29.2 234 91-373 3-246 (250)
146 PRK14237 phosphate transporter 100.0 1E-49 2.2E-54 382.8 30.1 238 88-374 17-264 (267)
147 PRK14249 phosphate ABC transpo 100.0 8.4E-50 1.8E-54 379.0 29.0 236 90-374 3-248 (251)
148 PRK10771 thiQ thiamine transpo 100.0 4.4E-50 9.6E-55 376.8 26.8 218 91-362 1-219 (232)
149 cd03235 ABC_Metallic_Cations A 100.0 1.1E-50 2.3E-55 375.7 22.2 197 93-313 1-202 (213)
150 PRK11247 ssuB aliphatic sulfon 100.0 3.7E-50 8E-55 385.1 26.7 209 89-358 10-219 (257)
151 PRK10261 glutathione transport 100.0 5.2E-50 1.1E-54 426.6 30.7 240 88-374 310-566 (623)
152 PRK13649 cbiO cobalt transport 100.0 5.4E-50 1.2E-54 386.7 27.5 222 91-361 2-233 (280)
153 PRK14261 phosphate ABC transpo 100.0 1.4E-49 3E-54 378.0 29.1 238 89-375 4-251 (253)
154 PRK13632 cbiO cobalt transport 100.0 6E-50 1.3E-54 385.2 26.8 223 89-361 5-230 (271)
155 PRK14238 phosphate transporter 100.0 1.2E-49 2.6E-54 383.3 28.8 238 88-374 21-268 (271)
156 PRK14255 phosphate ABC transpo 100.0 2.3E-49 5E-54 375.9 30.1 236 90-374 4-249 (252)
157 TIGR03873 F420-0_ABC_ATP propo 100.0 5.6E-50 1.2E-54 381.6 25.9 222 92-362 2-226 (256)
158 PRK14259 phosphate ABC transpo 100.0 1E-49 2.2E-54 383.5 27.7 235 89-375 11-267 (269)
159 PRK11174 cysteine/glutathione 100.0 5E-50 1.1E-54 422.6 27.9 272 17-372 298-581 (588)
160 PRK14253 phosphate ABC transpo 100.0 1.8E-49 4E-54 376.0 28.7 234 91-374 3-246 (249)
161 TIGR02142 modC_ABC molybdenum 100.0 7.2E-50 1.6E-54 399.2 27.3 215 96-362 4-221 (354)
162 PRK10762 D-ribose transporter 100.0 6.1E-50 1.3E-54 415.5 27.8 224 90-361 3-229 (501)
163 PRK14275 phosphate ABC transpo 100.0 1.5E-49 3.3E-54 385.8 28.7 238 88-374 36-283 (286)
164 PRK13640 cbiO cobalt transport 100.0 8.6E-50 1.9E-54 386.6 26.8 222 89-361 3-231 (282)
165 PRK14236 phosphate transporter 100.0 3.3E-49 7.2E-54 380.2 30.5 240 86-374 20-269 (272)
166 PRK09700 D-allose transporter 100.0 7E-50 1.5E-54 415.6 27.6 224 90-361 4-233 (510)
167 cd03300 ABC_PotA_N PotA is an 100.0 1.9E-49 4.2E-54 372.8 27.8 229 92-372 1-231 (232)
168 PRK13549 xylose transporter AT 100.0 7.8E-50 1.7E-54 415.1 27.6 224 90-361 4-231 (506)
169 cd03297 ABC_ModC_molybdenum_tr 100.0 1.2E-49 2.7E-54 369.2 26.0 210 92-355 2-214 (214)
170 PRK14260 phosphate ABC transpo 100.0 2.2E-49 4.8E-54 378.4 28.4 236 90-374 6-256 (259)
171 PRK14271 phosphate ABC transpo 100.0 4.2E-49 9.1E-54 380.9 30.0 236 89-374 19-264 (276)
172 PRK13633 cobalt transporter AT 100.0 1.4E-49 3.1E-54 384.5 26.7 222 90-362 3-233 (280)
173 TIGR01277 thiQ thiamine ABC tr 100.0 2.3E-49 5E-54 367.4 26.6 211 92-356 1-212 (213)
174 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-49 3.8E-54 413.2 28.6 219 90-361 10-228 (510)
175 PRK13648 cbiO cobalt transport 100.0 2.1E-49 4.5E-54 380.8 26.9 223 89-362 5-231 (269)
176 PRK14254 phosphate ABC transpo 100.0 5.4E-49 1.2E-53 382.0 30.0 237 88-374 36-282 (285)
177 KOG0058 Peptide exporter, ABC 100.0 3.4E-50 7.4E-55 421.4 23.0 285 6-373 404-702 (716)
178 PRK14243 phosphate transporter 100.0 3.3E-49 7.2E-54 378.7 27.8 235 89-374 8-261 (264)
179 COG1123 ATPase components of v 100.0 1.2E-49 2.6E-54 410.8 26.4 239 90-374 4-257 (539)
180 PRK13645 cbiO cobalt transport 100.0 2.7E-49 5.9E-54 383.9 27.2 222 91-361 6-239 (289)
181 TIGR03740 galliderm_ABC gallid 100.0 3.3E-49 7.1E-54 368.5 26.5 210 92-359 1-210 (223)
182 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.1E-49 4.5E-54 425.4 28.7 279 7-373 392-683 (686)
183 PRK14244 phosphate ABC transpo 100.0 4.1E-49 8.9E-54 374.3 27.4 231 92-371 6-247 (251)
184 TIGR00968 3a0106s01 sulfate AB 100.0 6.5E-49 1.4E-53 370.6 28.3 230 92-373 1-232 (237)
185 PRK13642 cbiO cobalt transport 100.0 3.8E-49 8.3E-54 381.0 27.2 222 90-362 3-229 (277)
186 PRK14258 phosphate ABC transpo 100.0 7.9E-49 1.7E-53 375.3 29.2 237 90-375 6-259 (261)
187 PRK14246 phosphate ABC transpo 100.0 5.4E-49 1.2E-53 376.3 28.0 239 88-376 7-256 (257)
188 PRK14257 phosphate ABC transpo 100.0 7E-49 1.5E-53 388.9 29.6 237 90-376 79-328 (329)
189 PRK13547 hmuV hemin importer A 100.0 2.7E-49 5.8E-54 382.0 26.0 230 91-362 1-244 (272)
190 COG1132 MdlB ABC-type multidru 100.0 1.6E-49 3.4E-54 417.6 25.9 282 6-372 268-561 (567)
191 cd03299 ABC_ModC_like Archeal 100.0 8.1E-49 1.8E-53 369.5 28.1 218 92-362 1-219 (235)
192 COG4988 CydD ABC-type transpor 100.0 1.6E-49 3.5E-54 409.2 25.0 281 4-365 255-546 (559)
193 PRK10261 glutathione transport 100.0 3.5E-49 7.5E-54 420.2 28.3 239 87-372 8-269 (623)
194 PRK14266 phosphate ABC transpo 100.0 1.3E-48 2.9E-53 370.3 28.2 235 91-374 3-247 (250)
195 PRK14265 phosphate ABC transpo 100.0 1.4E-48 3.1E-53 376.7 28.7 235 89-374 18-271 (274)
196 COG4161 ArtP ABC-type arginine 100.0 1.5E-49 3.3E-54 353.9 19.2 233 91-370 2-238 (242)
197 PRK10790 putative multidrug tr 100.0 8.8E-49 1.9E-53 413.7 28.5 265 15-365 290-566 (592)
198 PRK11176 lipid transporter ATP 100.0 5.1E-49 1.1E-53 414.2 26.5 282 7-372 282-576 (582)
199 TIGR02982 heterocyst_DevA ABC 100.0 1.2E-48 2.6E-53 364.3 26.0 205 91-313 1-211 (220)
200 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4E-49 8.7E-54 424.5 26.1 281 5-363 408-701 (710)
201 TIGR03608 L_ocin_972_ABC putat 100.0 8.6E-49 1.9E-53 360.4 23.9 201 94-313 1-203 (206)
202 CHL00131 ycf16 sulfate ABC tra 100.0 3.2E-48 6.8E-53 367.8 28.4 222 89-358 5-237 (252)
203 PRK15134 microcin C ABC transp 100.0 1.8E-48 4E-53 406.9 29.1 236 90-372 4-257 (529)
204 PRK10247 putative ABC transpor 100.0 9.8E-49 2.1E-53 366.7 24.3 201 89-313 5-207 (225)
205 COG4152 ABC-type uncharacteriz 100.0 1.5E-49 3.3E-54 372.8 18.6 218 90-361 1-218 (300)
206 PRK15134 microcin C ABC transp 100.0 1.4E-48 3E-53 407.8 27.9 237 88-372 272-526 (529)
207 TIGR03375 type_I_sec_LssB type 100.0 8.8E-49 1.9E-53 421.0 27.1 276 4-361 399-687 (694)
208 PRK10418 nikD nickel transport 100.0 3.6E-48 7.8E-53 369.1 28.0 228 91-373 4-242 (254)
209 PRK11288 araG L-arabinose tran 100.0 2E-48 4.3E-53 404.2 28.4 220 90-357 3-224 (501)
210 TIGR01193 bacteriocin_ABC ABC- 100.0 9.6E-49 2.1E-53 421.6 26.7 284 5-371 410-705 (708)
211 PRK14263 phosphate ABC transpo 100.0 7E-48 1.5E-52 369.4 29.5 235 89-374 6-258 (261)
212 COG4181 Predicted ABC-type tra 100.0 3.5E-49 7.5E-54 354.0 19.0 205 91-313 6-216 (228)
213 PRK14264 phosphate ABC transpo 100.0 7.7E-48 1.7E-52 377.2 29.8 243 85-375 39-303 (305)
214 PRK10982 galactose/methyl gala 100.0 1.6E-48 3.4E-53 403.8 26.2 220 94-361 1-222 (491)
215 PRK14252 phosphate ABC transpo 100.0 7.4E-48 1.6E-52 369.0 28.8 235 90-374 15-262 (265)
216 TIGR02633 xylG D-xylose ABC tr 100.0 2.9E-48 6.4E-53 402.4 27.8 222 91-360 1-228 (500)
217 PRK11160 cysteine/glutathione 100.0 5.5E-48 1.2E-52 407.2 28.5 258 36-372 302-571 (574)
218 TIGR00958 3a01208 Conjugate Tr 100.0 2.7E-48 5.8E-53 418.9 26.5 274 5-363 416-703 (711)
219 cd03234 ABCG_White The White s 100.0 5.1E-48 1.1E-52 361.5 24.9 213 91-355 3-226 (226)
220 cd03267 ABC_NatA_like Similar 100.0 4.4E-48 9.6E-53 365.0 24.7 207 99-355 29-236 (236)
221 PRK13543 cytochrome c biogenes 100.0 8.5E-48 1.8E-52 357.8 24.9 206 84-315 4-209 (214)
222 cd03252 ABCC_Hemolysin The ABC 100.0 2E-48 4.2E-53 366.1 20.9 217 92-363 1-226 (237)
223 PRK15056 manganese/iron transp 100.0 9.8E-48 2.1E-52 370.0 25.9 218 91-361 6-229 (272)
224 cd03251 ABCC_MsbA MsbA is an e 100.0 4.7E-48 1E-52 362.5 23.0 216 92-362 1-225 (234)
225 COG4559 ABC-type hemin transpo 100.0 1.7E-48 3.6E-53 359.6 19.1 237 91-373 1-239 (259)
226 TIGR02770 nickel_nikD nickel i 100.0 1.1E-47 2.4E-52 360.5 24.7 218 106-375 1-229 (230)
227 PRK09580 sufC cysteine desulfu 100.0 1.7E-47 3.7E-52 361.6 26.0 220 91-358 1-231 (248)
228 COG4525 TauB ABC-type taurine 100.0 3.9E-48 8.5E-53 353.5 20.7 199 91-313 3-203 (259)
229 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-47 2.9E-52 404.6 28.0 215 91-364 334-560 (588)
230 cd03245 ABCC_bacteriocin_expor 100.0 4.3E-48 9.2E-53 359.6 21.2 205 92-355 3-220 (220)
231 TIGR02203 MsbA_lipidA lipid A 100.0 7.8E-48 1.7E-52 403.8 25.8 285 5-373 269-566 (571)
232 PRK13549 xylose transporter AT 100.0 7.9E-48 1.7E-52 400.1 25.5 226 88-361 256-493 (506)
233 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-47 2.5E-52 399.9 26.7 225 88-361 276-516 (520)
234 COG1129 MglA ABC-type sugar tr 100.0 1.2E-47 2.5E-52 393.7 26.0 225 88-360 5-233 (500)
235 TIGR01184 ntrCD nitrate transp 100.0 1.3E-47 2.8E-52 360.6 24.0 200 107-360 1-202 (230)
236 TIGR02324 CP_lyasePhnL phospho 100.0 1.9E-47 4.2E-52 356.5 24.9 205 91-313 1-219 (224)
237 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-47 2.5E-52 399.8 26.1 222 92-361 1-257 (520)
238 COG4172 ABC-type uncharacteriz 100.0 1.7E-47 3.7E-52 379.0 25.8 244 86-376 271-531 (534)
239 KOG0055 Multidrug/pheromone ex 100.0 1.1E-48 2.3E-53 429.1 19.0 215 91-364 350-578 (1228)
240 PRK13538 cytochrome c biogenes 100.0 1.7E-47 3.6E-52 353.1 24.1 199 91-313 1-199 (204)
241 TIGR01846 type_I_sec_HlyB type 100.0 1.6E-47 3.6E-52 411.3 26.8 284 5-372 393-689 (694)
242 cd03254 ABCC_Glucan_exporter_l 100.0 6.7E-48 1.5E-52 360.3 20.2 211 92-361 3-225 (229)
243 TIGR01842 type_I_sec_PrtD type 100.0 7E-47 1.5E-51 396.0 30.0 277 5-361 256-541 (544)
244 COG4604 CeuD ABC-type enteroch 100.0 8.8E-49 1.9E-53 358.1 13.1 233 91-373 1-234 (252)
245 PRK03695 vitamin B12-transport 100.0 2E-47 4.4E-52 363.2 22.8 222 92-362 1-222 (248)
246 PRK09544 znuC high-affinity zi 100.0 4E-47 8.6E-52 362.7 24.8 203 90-361 3-208 (251)
247 cd03231 ABC_CcmA_heme_exporter 100.0 2.4E-47 5.2E-52 351.6 21.8 195 92-313 1-195 (201)
248 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.7E-47 3.7E-52 359.9 20.8 216 92-362 1-226 (238)
249 PRK09700 D-allose transporter 100.0 3.4E-47 7.4E-52 395.5 25.3 222 88-359 262-495 (510)
250 cd03253 ABCC_ATM1_transporter 100.0 6.1E-47 1.3E-51 355.4 24.5 216 92-362 1-224 (236)
251 PRK10938 putative molybdenum t 100.0 2.2E-47 4.8E-52 394.9 23.0 214 91-362 3-224 (490)
252 TIGR02633 xylG D-xylose ABC tr 100.0 4.1E-47 9E-52 393.8 25.0 224 89-360 255-490 (500)
253 TIGR01192 chvA glucan exporter 100.0 1.2E-46 2.7E-51 397.8 28.9 283 8-373 274-568 (585)
254 COG4987 CydC ABC-type transpor 100.0 1.3E-47 2.9E-52 390.8 20.7 279 11-373 280-571 (573)
255 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.9E-47 1.1E-51 355.5 22.7 202 92-355 23-224 (224)
256 TIGR02204 MsbA_rel ABC transpo 100.0 8.5E-47 1.9E-51 396.6 26.9 283 7-371 275-571 (576)
257 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.5E-47 7.7E-52 368.2 21.7 220 92-373 3-235 (275)
258 PRK10789 putative multidrug tr 100.0 1.4E-46 3E-51 396.1 27.0 273 7-363 254-539 (569)
259 cd03230 ABC_DR_subfamily_A Thi 100.0 1.3E-46 2.9E-51 339.0 23.0 165 92-313 1-165 (173)
260 cd03248 ABCC_TAP TAP, the Tran 100.0 3E-47 6.6E-52 355.6 19.3 202 87-313 7-218 (226)
261 cd03229 ABC_Class3 This class 100.0 1.9E-46 4.1E-51 339.4 22.4 170 92-313 1-171 (178)
262 TIGR02868 CydC thiol reductant 100.0 1.1E-46 2.5E-51 392.5 24.0 243 11-303 275-529 (529)
263 cd03244 ABCC_MRP_domain2 Domai 100.0 1.5E-46 3.2E-51 349.5 21.8 205 92-356 3-220 (221)
264 KOG0057 Mitochondrial Fe/S clu 100.0 1.8E-46 4E-51 382.9 24.1 221 92-373 352-584 (591)
265 PRK13539 cytochrome c biogenes 100.0 2.7E-46 5.9E-51 346.0 23.0 194 91-313 2-195 (207)
266 PRK13540 cytochrome c biogenes 100.0 2.9E-46 6.2E-51 343.9 23.0 196 91-313 1-196 (200)
267 cd03215 ABC_Carb_Monos_II This 100.0 2.5E-46 5.5E-51 339.7 22.3 170 89-313 2-174 (182)
268 cd03369 ABCC_NFT1 Domain 2 of 100.0 5.7E-46 1.2E-50 343.0 23.9 200 90-356 5-206 (207)
269 cd03288 ABCC_SUR2 The SUR doma 100.0 2.6E-46 5.6E-51 357.2 22.3 228 90-373 18-254 (257)
270 PRK10762 D-ribose transporter 100.0 4.1E-46 9E-51 386.8 25.5 220 89-361 255-483 (501)
271 cd03213 ABCG_EPDR ABCG transpo 100.0 5.6E-46 1.2E-50 341.2 23.3 183 91-355 3-194 (194)
272 COG3845 ABC-type uncharacteriz 100.0 3.6E-46 7.8E-51 377.5 24.1 219 90-356 3-223 (501)
273 TIGR01166 cbiO cobalt transpor 100.0 2.5E-46 5.4E-51 341.0 20.8 186 101-305 2-189 (190)
274 COG4608 AppF ABC-type oligopep 100.0 2.3E-46 5E-51 357.3 21.1 199 90-374 3-212 (268)
275 cd03233 ABC_PDR_domain1 The pl 100.0 9.8E-46 2.1E-50 341.6 24.7 192 91-355 3-202 (202)
276 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.3E-46 1.6E-50 341.7 23.6 188 92-360 1-191 (200)
277 TIGR01189 ccmA heme ABC export 100.0 6.2E-46 1.3E-50 340.8 22.6 195 92-313 1-195 (198)
278 cd03232 ABC_PDR_domain2 The pl 100.0 9.4E-46 2E-50 338.9 23.3 183 90-355 2-192 (192)
279 TIGR02857 CydD thiol reductant 100.0 6E-46 1.3E-50 387.1 24.8 251 9-313 263-526 (529)
280 PRK11288 araG L-arabinose tran 100.0 6.2E-46 1.4E-50 385.5 24.6 221 89-361 255-484 (501)
281 cd03214 ABC_Iron-Siderophores_ 100.0 3.7E-46 8.1E-51 338.0 19.8 179 93-355 1-180 (180)
282 PTZ00265 multidrug resistance 100.0 7.3E-46 1.6E-50 424.3 26.7 265 36-372 1124-1462(1466)
283 cd03246 ABCC_Protease_Secretio 100.0 7.5E-46 1.6E-50 334.1 20.9 163 92-313 1-165 (173)
284 KOG0055 Multidrug/pheromone ex 100.0 6.8E-46 1.5E-50 407.1 24.8 255 37-367 950-1218(1228)
285 COG4172 ABC-type uncharacteriz 100.0 1.2E-45 2.6E-50 365.9 23.6 240 89-374 4-260 (534)
286 PRK13546 teichoic acids export 100.0 5.3E-45 1.2E-49 350.8 27.3 220 91-373 4-243 (264)
287 cd03247 ABCC_cytochrome_bd The 100.0 9.2E-46 2E-50 334.6 20.0 176 92-355 1-178 (178)
288 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-45 3.7E-50 383.3 24.9 221 88-361 265-491 (510)
289 TIGR01257 rim_protein retinal- 100.0 3.1E-45 6.7E-50 423.5 28.5 221 89-360 1935-2157(2272)
290 PLN03130 ABC transporter C fam 100.0 4.6E-45 9.9E-50 421.1 29.0 219 91-369 1237-1468(1622)
291 COG4148 ModC ABC-type molybdat 100.0 2.6E-46 5.5E-51 356.7 15.2 213 96-363 5-219 (352)
292 TIGR01257 rim_protein retinal- 100.0 5.7E-45 1.2E-49 421.3 29.1 222 87-360 924-1147(2272)
293 PRK10982 galactose/methyl gala 100.0 3.2E-45 6.8E-50 379.1 24.3 222 89-360 248-478 (491)
294 PLN03232 ABC transporter C fam 100.0 3.8E-45 8.2E-50 420.2 27.4 215 91-365 1234-1461(1495)
295 cd03250 ABCC_MRP_domain1 Domai 100.0 2.5E-45 5.5E-50 337.9 20.0 180 92-313 1-197 (204)
296 PRK10938 putative molybdenum t 100.0 3.7E-45 7.9E-50 378.4 23.4 221 88-355 257-485 (490)
297 PRK15064 ABC transporter ATP-b 100.0 4.5E-45 9.7E-50 381.5 24.3 208 91-361 1-241 (530)
298 TIGR01187 potA spermidine/putr 100.0 5.9E-45 1.3E-49 360.0 23.6 200 122-373 1-202 (325)
299 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.6E-44 3.4E-49 379.6 28.1 274 5-354 266-551 (555)
300 TIGR00957 MRP_assoc_pro multi 100.0 8.9E-45 1.9E-49 417.7 28.1 275 17-372 1230-1517(1522)
301 PRK11819 putative ABC transpor 100.0 4.6E-45 1E-49 383.8 23.3 208 90-361 5-249 (556)
302 PRK13545 tagH teichoic acids e 100.0 2.1E-44 4.5E-49 373.1 27.4 211 89-362 19-232 (549)
303 PRK10535 macrolide transporter 100.0 3.5E-44 7.5E-49 383.5 29.7 223 90-361 3-231 (648)
304 PRK13541 cytochrome c biogenes 100.0 1.3E-44 2.9E-49 331.5 21.5 192 91-313 1-192 (195)
305 PRK10522 multidrug transporter 100.0 5.1E-44 1.1E-48 374.8 28.8 252 19-357 275-533 (547)
306 PRK15064 ABC transporter ATP-b 100.0 1.1E-44 2.3E-49 378.7 23.5 204 89-361 317-524 (530)
307 TIGR03771 anch_rpt_ABC anchore 100.0 1.4E-44 3E-49 338.5 21.4 196 112-362 1-201 (223)
308 cd03216 ABC_Carb_Monos_I This 100.0 3.6E-44 7.8E-49 320.9 23.1 152 92-313 1-152 (163)
309 PLN03211 ABC transporter G-25; 100.0 1.1E-44 2.3E-49 387.8 23.2 215 93-360 70-294 (659)
310 cd03228 ABCC_MRP_Like The MRP 100.0 1.1E-44 2.4E-49 325.9 19.5 162 92-313 1-164 (171)
311 PTZ00243 ABC transporter; Prov 100.0 3.9E-44 8.5E-49 412.5 29.2 223 91-372 1308-1543(1560)
312 cd03290 ABCC_SUR1_N The SUR do 100.0 3.7E-44 8E-49 333.4 21.8 194 93-313 2-211 (218)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.8E-44 8.2E-49 376.5 23.9 208 90-361 3-247 (552)
314 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.6E-43 1E-47 340.6 26.8 210 88-372 36-257 (282)
315 PTZ00265 multidrug resistance 100.0 1.4E-43 3E-48 405.6 26.5 242 36-317 346-653 (1466)
316 PRK11819 putative ABC transpor 100.0 3.5E-43 7.6E-48 369.6 25.6 208 89-362 322-533 (556)
317 cd03223 ABCD_peroxisomal_ALDP 100.0 3.1E-43 6.7E-48 315.8 20.6 156 92-313 1-157 (166)
318 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.3E-43 7.2E-48 369.3 24.2 190 88-313 319-510 (552)
319 COG4674 Uncharacterized ABC-ty 100.0 5.5E-44 1.2E-48 326.1 14.5 235 90-375 4-246 (249)
320 PRK10636 putative ABC transpor 100.0 6E-43 1.3E-47 373.4 24.4 203 88-360 309-515 (638)
321 PRK13409 putative ATPase RIL; 100.0 8.9E-43 1.9E-47 368.9 25.4 187 88-313 337-524 (590)
322 COG4619 ABC-type uncharacteriz 100.0 3E-44 6.5E-49 321.3 11.9 201 91-313 3-204 (223)
323 COG4167 SapF ABC-type antimicr 100.0 3.9E-43 8.4E-48 318.2 18.6 237 90-374 3-252 (267)
324 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.2E-43 6.9E-48 337.0 18.8 194 95-313 4-209 (255)
325 TIGR01271 CFTR_protein cystic 100.0 2.9E-42 6.3E-47 396.1 30.3 221 91-373 1217-1450(1490)
326 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.2E-42 2.5E-47 331.3 20.9 174 104-313 7-186 (246)
327 PRK11147 ABC transporter ATPas 100.0 1.9E-42 4.2E-47 369.2 24.9 191 87-313 315-507 (635)
328 COG1119 ModF ABC-type molybden 100.0 7.6E-43 1.7E-47 328.2 18.8 224 86-356 26-256 (257)
329 COG4618 ArpD ABC-type protease 100.0 1.8E-42 3.8E-47 351.1 21.1 261 17-361 286-559 (580)
330 PRK10636 putative ABC transpor 100.0 5.9E-42 1.3E-46 365.8 22.8 207 91-361 1-235 (638)
331 PRK15177 Vi polysaccharide exp 100.0 4.8E-42 1E-46 319.9 19.4 190 105-361 1-191 (213)
332 TIGR00956 3a01205 Pleiotropic 100.0 2.1E-41 4.5E-46 386.8 27.2 219 88-359 756-990 (1394)
333 COG4107 PhnK ABC-type phosphon 100.0 5.4E-42 1.2E-46 308.7 16.5 242 89-376 4-256 (258)
334 KOG0056 Heavy metal exporter H 100.0 1.8E-42 3.9E-47 349.0 14.7 214 91-363 537-762 (790)
335 TIGR00955 3a01204 The Eye Pigm 100.0 1.4E-41 3E-46 361.6 22.1 207 102-360 36-254 (617)
336 TIGR00954 3a01203 Peroxysomal 100.0 2.9E-41 6.4E-46 361.6 23.6 189 90-313 450-648 (659)
337 PRK11147 ABC transporter ATPas 100.0 4.2E-41 9.2E-46 358.9 24.1 206 91-361 3-242 (635)
338 PLN03073 ABC transporter F fam 100.0 7.3E-41 1.6E-45 360.9 25.5 203 89-360 506-712 (718)
339 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 9.3E-41 2E-45 293.6 20.2 137 92-313 1-137 (144)
340 PLN03130 ABC transporter C fam 100.0 2.3E-40 5.1E-45 382.1 27.5 234 36-362 579-828 (1622)
341 COG1101 PhnK ABC-type uncharac 100.0 6.2E-41 1.4E-45 310.0 17.0 221 91-359 1-235 (263)
342 PLN03232 ABC transporter C fam 100.0 2.9E-40 6.3E-45 379.9 26.4 247 19-362 567-828 (1495)
343 cd03222 ABC_RNaseL_inhibitor T 100.0 2.3E-40 4.9E-45 301.7 19.4 139 95-313 4-142 (177)
344 COG0396 sufC Cysteine desulfur 100.0 1E-39 2.2E-44 304.4 22.8 223 90-360 2-231 (251)
345 PLN03140 ABC transporter G fam 100.0 8.6E-40 1.9E-44 373.8 27.1 218 90-359 866-1107(1470)
346 TIGR00957 MRP_assoc_pro multi 100.0 2.7E-39 5.9E-44 372.4 28.1 238 36-362 598-850 (1522)
347 COG5265 ATM1 ABC-type transpor 100.0 2.1E-40 4.6E-45 330.0 16.3 213 92-363 263-487 (497)
348 COG1134 TagH ABC-type polysacc 100.0 5.5E-39 1.2E-43 302.2 21.7 195 104-361 40-235 (249)
349 PRK13409 putative ATPase RIL; 100.0 5.8E-40 1.3E-44 347.5 16.4 192 95-316 77-284 (590)
350 cd00267 ABC_ATPase ABC (ATP-bi 100.0 9.1E-39 2E-43 282.9 21.2 149 94-313 2-150 (157)
351 COG4586 ABC-type uncharacteriz 100.0 6.8E-40 1.5E-44 311.8 14.7 206 105-360 38-244 (325)
352 COG0488 Uup ATPase components 100.0 5.6E-39 1.2E-43 334.8 21.5 208 90-361 2-239 (530)
353 TIGR00956 3a01205 Pleiotropic 100.0 9E-39 2E-43 365.2 23.2 208 103-360 73-298 (1394)
354 TIGR01271 CFTR_protein cystic 100.0 5.5E-38 1.2E-42 360.9 27.0 197 92-363 429-637 (1490)
355 COG4136 ABC-type uncharacteriz 100.0 9.7E-39 2.1E-43 281.7 14.8 194 91-307 2-199 (213)
356 cd03238 ABC_UvrA The excision 100.0 4.1E-38 8.9E-43 286.6 19.3 149 103-313 7-158 (176)
357 PLN03140 ABC transporter G fam 100.0 3.4E-38 7.4E-43 360.7 19.9 206 103-360 177-425 (1470)
358 PLN03073 ABC transporter F fam 100.0 4.4E-38 9.6E-43 339.3 18.0 221 89-360 175-429 (718)
359 KOG0059 Lipid exporter ABCA1 a 100.0 1E-37 2.2E-42 343.6 19.8 222 90-360 563-785 (885)
360 KOG0054 Multidrug resistance-a 100.0 2.4E-37 5.2E-42 345.9 22.7 220 87-368 1136-1368(1381)
361 KOG0061 Transporter, ABC super 100.0 8.6E-37 1.9E-41 324.5 23.5 218 90-359 24-257 (613)
362 PTZ00243 ABC transporter; Prov 100.0 1.6E-36 3.4E-41 349.7 26.3 194 100-362 669-870 (1560)
363 COG4133 CcmA ABC-type transpor 100.0 3.7E-37 8.1E-42 279.7 15.7 192 91-306 2-193 (209)
364 cd03270 ABC_UvrA_I The excisio 100.0 2.1E-36 4.6E-41 284.4 19.1 198 101-355 5-226 (226)
365 COG0488 Uup ATPase components 100.0 1.4E-35 3E-40 309.5 20.6 187 87-313 317-506 (530)
366 KOG0054 Multidrug resistance-a 100.0 2E-34 4.3E-39 322.6 24.9 237 36-362 481-731 (1381)
367 COG4778 PhnL ABC-type phosphon 100.0 3.9E-35 8.6E-40 263.3 14.4 205 91-313 4-222 (235)
368 PF00005 ABC_tran: ABC transpo 100.0 5.4E-35 1.2E-39 251.4 12.6 133 107-262 1-137 (137)
369 COG4138 BtuD ABC-type cobalami 100.0 6.2E-35 1.3E-39 263.1 8.8 229 90-373 2-230 (248)
370 cd03271 ABC_UvrA_II The excisi 100.0 3.6E-33 7.9E-38 268.6 18.2 202 104-357 8-261 (261)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 5.1E-33 1.1E-37 256.8 13.9 165 106-313 11-185 (197)
372 COG1129 MglA ABC-type sugar tr 100.0 6.3E-32 1.4E-36 277.7 22.5 222 87-360 259-488 (500)
373 cd03273 ABC_SMC2_euk Eukaryoti 100.0 5.3E-33 1.1E-37 264.6 10.3 198 92-313 6-238 (251)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 6.2E-32 1.3E-36 254.7 12.8 201 92-315 4-232 (243)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 1E-31 2.2E-36 250.1 13.1 194 91-313 5-203 (213)
376 cd03274 ABC_SMC4_euk Eukaryoti 100.0 5.9E-33 1.3E-37 259.2 1.8 185 92-313 6-199 (212)
377 COG4170 SapD ABC-type antimicr 100.0 3.6E-30 7.8E-35 238.2 12.2 239 90-374 2-261 (330)
378 COG3845 ABC-type uncharacteriz 100.0 1.3E-28 2.8E-33 250.0 22.7 230 84-361 250-491 (501)
379 COG4615 PvdE ABC-type sideroph 100.0 2.7E-29 5.8E-34 249.1 16.5 251 20-359 276-533 (546)
380 PRK00635 excinuclease ABC subu 100.0 1.1E-28 2.4E-33 282.6 23.4 222 90-362 599-906 (1809)
381 PRK00349 uvrA excinuclease ABC 100.0 3.4E-29 7.3E-34 275.7 18.5 141 182-377 792-942 (943)
382 cd03240 ABC_Rad50 The catalyti 100.0 1.8E-29 3.9E-34 234.3 12.8 160 110-313 16-192 (204)
383 KOG0927 Predicted transporter 100.0 7.7E-30 1.7E-34 260.6 11.2 187 88-313 386-576 (614)
384 KOG0065 Pleiotropic drug resis 100.0 2E-28 4.3E-33 270.1 18.7 217 91-359 787-1018(1391)
385 COG4178 ABC-type uncharacteriz 100.0 8.1E-28 1.8E-32 251.8 20.5 187 89-313 390-583 (604)
386 KOG0927 Predicted transporter 99.9 1.7E-27 3.7E-32 243.5 15.2 213 91-361 75-308 (614)
387 COG1245 Predicted ATPase, RNas 99.9 1.7E-27 3.8E-32 239.6 14.7 189 89-315 340-528 (591)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.9 4.2E-27 9.2E-32 217.5 15.1 173 106-313 11-185 (198)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2E-27 4.3E-32 226.1 10.2 197 92-313 4-228 (247)
390 TIGR00630 uvra excinuclease AB 99.9 3.6E-26 7.9E-31 251.4 20.6 127 182-360 790-923 (924)
391 KOG0062 ATPase component of AB 99.9 6.2E-27 1.3E-31 238.3 9.9 184 91-313 80-265 (582)
392 KOG0062 ATPase component of AB 99.9 7E-26 1.5E-30 230.6 14.5 198 88-353 359-559 (582)
393 KOG0066 eIF2-interacting prote 99.9 1.4E-25 3E-30 224.9 12.4 186 83-309 578-767 (807)
394 KOG0060 Long-chain acyl-CoA tr 99.9 2.9E-24 6.3E-29 221.3 17.9 193 89-313 431-636 (659)
395 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.2E-23 2.6E-28 194.1 11.0 136 105-313 15-160 (200)
396 KOG2355 Predicted ABC-type tra 99.9 8.2E-23 1.8E-27 188.8 15.6 208 88-353 10-228 (291)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 4.4E-23 9.5E-28 193.0 12.5 182 107-313 14-202 (213)
398 COG1245 Predicted ATPase, RNas 99.9 7E-23 1.5E-27 206.5 9.4 189 96-313 79-283 (591)
399 cd03283 ABC_MutS-like MutS-lik 99.9 2.8E-22 6.2E-27 185.7 11.4 141 103-309 13-154 (199)
400 KOG0065 Pleiotropic drug resis 99.9 8.1E-22 1.8E-26 218.2 13.4 206 104-360 128-349 (1391)
401 cd03239 ABC_SMC_head The struc 99.9 8.8E-21 1.9E-25 172.8 15.2 73 227-313 95-167 (178)
402 KOG0064 Peroxisomal long-chain 99.8 1.2E-21 2.7E-26 200.1 8.6 184 91-313 481-678 (728)
403 COG2401 ABC-type ATPase fused 99.8 6.3E-21 1.4E-25 190.7 13.3 168 104-309 396-574 (593)
404 cd03241 ABC_RecN RecN ATPase i 99.8 2.8E-20 6E-25 180.1 17.2 73 226-313 170-242 (276)
405 KOG0066 eIF2-interacting prote 99.8 1.3E-21 2.9E-26 196.4 4.7 203 91-313 264-479 (807)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.8 9.1E-21 2E-25 178.5 10.0 141 102-313 15-162 (222)
407 cd03227 ABC_Class2 ABC-type Cl 99.8 4.1E-20 9E-25 165.2 12.9 138 108-313 12-150 (162)
408 PRK00635 excinuclease ABC subu 99.8 1.2E-19 2.6E-24 208.9 18.0 146 182-373 1661-1807(1809)
409 PRK00349 uvrA excinuclease ABC 99.8 5.8E-20 1.3E-24 203.0 14.1 135 179-362 434-585 (943)
410 cd03243 ABC_MutS_homologs The 99.8 6.3E-20 1.4E-24 169.4 8.8 140 107-313 19-160 (202)
411 COG0178 UvrA Excinuclease ATPa 99.8 4.8E-19 1E-23 188.5 14.8 123 207-374 802-931 (935)
412 cd03282 ABC_MSH4_euk MutS4 hom 99.8 2.8E-19 6.1E-24 166.4 10.9 145 102-311 14-159 (204)
413 TIGR00630 uvra excinuclease AB 99.8 2.8E-19 6E-24 197.3 12.0 133 181-362 434-583 (924)
414 cd03242 ABC_RecF RecF is a rec 99.8 2.4E-18 5.2E-23 166.0 14.7 73 224-310 181-255 (270)
415 cd03284 ABC_MutS1 MutS1 homolo 99.8 5.8E-18 1.3E-22 158.8 12.3 142 103-313 17-162 (216)
416 KOG0063 RNAse L inhibitor, ABC 99.7 1E-17 2.2E-22 168.3 12.3 180 99-314 343-528 (592)
417 TIGR02858 spore_III_AA stage I 99.7 2.6E-17 5.7E-22 159.4 11.2 157 118-361 112-268 (270)
418 smart00534 MUTSac ATPase domai 99.7 1.4E-16 3E-21 145.5 7.1 80 215-313 50-131 (185)
419 cd03281 ABC_MSH5_euk MutS5 hom 99.6 2.3E-15 5.1E-20 140.9 13.6 141 105-310 17-161 (213)
420 PF02463 SMC_N: RecF/RecN/SMC 99.6 2.8E-16 6.1E-21 146.0 4.0 180 108-313 16-208 (220)
421 TIGR01069 mutS2 MutS2 family p 99.6 1E-15 2.3E-20 166.9 8.7 152 91-307 295-449 (771)
422 PRK00064 recF recombination pr 99.6 6.2E-14 1.4E-18 141.0 17.6 74 225-311 272-347 (361)
423 cd00820 PEPCK_HprK Phosphoenol 99.6 2.9E-15 6.3E-20 126.1 6.2 77 104-191 2-78 (107)
424 PTZ00132 GTP-binding nuclear p 99.5 6.2E-15 1.3E-19 136.5 7.0 149 119-281 11-205 (215)
425 KOG0063 RNAse L inhibitor, ABC 99.5 1.2E-14 2.5E-19 146.5 4.6 175 114-316 97-286 (592)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.5 4.4E-13 9.5E-18 126.6 13.4 139 103-307 17-158 (222)
427 PRK07721 fliI flagellum-specif 99.5 1.3E-12 2.8E-17 134.5 16.5 186 103-359 145-340 (438)
428 cd01128 rho_factor Transcripti 99.4 2.6E-13 5.7E-18 130.2 9.3 178 112-352 11-212 (249)
429 COG0178 UvrA Excinuclease ATPa 99.4 3.1E-12 6.6E-17 137.2 16.1 128 211-378 465-593 (935)
430 PRK08533 flagellar accessory p 99.4 2.1E-12 4.6E-17 122.3 12.1 152 92-305 8-164 (230)
431 TIGR00618 sbcc exonuclease Sbc 99.4 8.2E-13 1.8E-17 148.9 10.8 84 216-313 940-1030(1042)
432 PRK00409 recombination and DNA 99.4 1.6E-12 3.4E-17 142.5 12.5 139 110-313 319-460 (782)
433 PHA02562 46 endonuclease subun 99.4 8.7E-13 1.9E-17 138.7 8.5 79 222-313 464-546 (562)
434 TIGR00634 recN DNA repair prot 99.4 1.2E-12 2.6E-17 138.8 9.2 74 225-313 439-512 (563)
435 PF13304 AAA_21: AAA domain; P 99.3 5E-12 1.1E-16 114.1 9.9 67 224-305 234-301 (303)
436 cd03286 ABC_MSH6_euk MutS6 hom 99.3 2.1E-11 4.5E-16 114.9 14.3 144 102-310 15-160 (218)
437 cd01124 KaiC KaiC is a circadi 99.3 1.1E-11 2.3E-16 111.6 11.0 86 212-313 57-159 (187)
438 PRK13695 putative NTPase; Prov 99.3 2.9E-12 6.2E-17 115.4 6.8 81 222-354 74-156 (174)
439 PRK10869 recombination and rep 99.3 7E-12 1.5E-16 132.8 9.9 73 226-313 430-502 (553)
440 PRK01156 chromosome segregatio 99.3 1.6E-11 3.5E-16 136.4 12.3 78 222-315 797-881 (895)
441 PRK06793 fliI flagellum-specif 99.3 2.7E-11 5.8E-16 124.4 12.2 175 91-328 130-306 (432)
442 TIGR00606 rad50 rad50. This fa 99.3 1.8E-11 3.8E-16 141.1 11.8 75 222-313 1195-1280(1311)
443 PRK03918 chromosome segregatio 99.3 1.2E-11 2.6E-16 136.7 9.5 75 221-313 783-863 (880)
444 PRK13830 conjugal transfer pro 99.3 7.7E-11 1.7E-15 130.0 15.2 79 219-307 605-699 (818)
445 TIGR03238 dnd_assoc_3 dnd syst 99.2 2.7E-12 5.8E-17 132.3 3.2 67 105-176 20-87 (504)
446 PRK10246 exonuclease subunit S 99.2 3.5E-11 7.6E-16 135.9 10.5 82 220-311 943-1025(1047)
447 TIGR02788 VirB11 P-type DNA tr 99.2 3E-11 6.6E-16 119.1 8.8 43 110-152 137-179 (308)
448 COG3910 Predicted ATPase [Gene 99.2 1.1E-10 2.3E-15 107.4 10.8 69 220-306 123-191 (233)
449 TIGR02168 SMC_prok_B chromosom 99.2 3.2E-11 6.9E-16 135.5 8.1 77 219-313 1082-1161(1179)
450 TIGR02169 SMC_prok_A chromosom 99.1 1.6E-10 3.5E-15 130.3 8.7 79 221-314 1069-1147(1164)
451 cd01120 RecA-like_NTPases RecA 99.1 3.2E-10 6.9E-15 98.0 8.6 131 119-307 1-141 (165)
452 PRK06995 flhF flagellar biosyn 99.0 8.4E-10 1.8E-14 114.9 8.6 147 106-283 245-392 (484)
453 PRK02224 chromosome segregatio 99.0 9.7E-10 2.1E-14 121.9 9.1 79 223-313 778-863 (880)
454 PRK06067 flagellar accessory p 99.0 5.4E-09 1.2E-13 98.5 11.4 150 113-312 21-174 (234)
455 cd01130 VirB11-like_ATPase Typ 98.9 1.4E-09 3E-14 99.3 6.5 82 107-193 15-98 (186)
456 PRK06002 fliI flagellum-specif 98.9 1.8E-09 3.9E-14 111.3 7.9 86 90-176 138-229 (450)
457 PRK07196 fliI flagellum-specif 98.9 1.4E-09 3.1E-14 111.8 5.4 89 103-192 142-237 (434)
458 smart00382 AAA ATPases associa 98.9 7.3E-08 1.6E-12 79.6 14.7 119 116-302 1-125 (148)
459 TIGR02655 circ_KaiC circadian 98.9 5.6E-11 1.2E-15 124.0 -5.7 158 113-316 17-189 (484)
460 PRK06315 type III secretion sy 98.9 2.7E-09 6E-14 110.0 6.7 124 104-229 152-294 (442)
461 PRK13891 conjugal transfer pro 98.9 7.6E-08 1.7E-12 107.0 18.0 55 237-308 680-735 (852)
462 cd01125 repA Hexameric Replica 98.9 8.7E-09 1.9E-13 97.5 9.2 137 117-304 1-160 (239)
463 cd01131 PilT Pilus retraction 98.8 3.4E-08 7.5E-13 91.3 11.4 57 236-317 66-122 (198)
464 cd02023 UMPK Uridine monophosp 98.8 4.2E-09 9.1E-14 96.5 4.8 114 119-267 1-114 (198)
465 PRK13898 type IV secretion sys 98.8 1E-07 2.2E-12 105.3 15.9 49 250-308 641-690 (800)
466 TIGR03881 KaiC_arch_4 KaiC dom 98.7 2E-09 4.4E-14 100.7 0.3 41 113-153 16-57 (229)
467 TIGR00611 recf recF protein. A 98.7 2.3E-08 4.9E-13 101.1 7.9 70 225-307 274-345 (365)
468 TIGR01026 fliI_yscN ATPase Fli 98.7 1.8E-07 4E-12 96.7 14.4 51 103-154 150-200 (440)
469 PRK09825 idnK D-gluconate kina 98.7 7.8E-09 1.7E-13 94.1 3.7 70 116-192 2-71 (176)
470 PRK05399 DNA mismatch repair p 98.6 4.2E-07 9.1E-12 101.1 15.1 141 104-313 595-739 (854)
471 TIGR02680 conserved hypothetic 98.6 9E-08 2E-12 110.9 9.6 106 219-350 1240-1350(1353)
472 COG0419 SbcC ATPase involved i 98.6 1.1E-07 2.5E-12 106.3 8.7 80 222-313 811-892 (908)
473 PRK08149 ATP synthase SpaL; Va 98.6 8.5E-08 1.8E-12 98.7 6.5 75 102-177 137-216 (428)
474 cd01876 YihA_EngB The YihA (En 98.5 2.7E-07 5.8E-12 79.5 8.1 146 120-279 2-169 (170)
475 TIGR00235 udk uridine kinase. 98.5 2.5E-08 5.5E-13 92.4 1.3 29 115-143 4-32 (207)
476 PLN03210 Resistant to P. syrin 98.5 2.4E-07 5.3E-12 106.0 9.2 44 109-152 199-243 (1153)
477 PRK01889 GTPase RsgA; Reviewed 98.5 1.3E-07 2.9E-12 95.2 5.9 78 107-190 185-262 (356)
478 PRK13873 conjugal transfer ATP 98.5 1E-06 2.3E-11 97.5 13.2 48 250-307 634-682 (811)
479 PRK00454 engB GTP-binding prot 98.5 3.1E-07 6.7E-12 82.8 7.2 67 206-282 126-195 (196)
480 PRK09862 putative ATP-dependen 98.5 9.8E-08 2.1E-12 100.2 4.4 63 94-156 187-249 (506)
481 PRK10078 ribose 1,5-bisphospho 98.5 2E-07 4.4E-12 84.9 5.6 55 117-176 2-56 (186)
482 PRK00300 gmk guanylate kinase; 98.5 1.3E-07 2.7E-12 86.9 4.2 40 115-156 3-54 (205)
483 TIGR02322 phosphon_PhnN phosph 98.5 4.3E-07 9.4E-12 81.7 7.3 67 117-185 1-82 (179)
484 PRK07594 type III secretion sy 98.5 1.5E-07 3.3E-12 97.0 4.8 63 91-154 129-192 (433)
485 TIGR02903 spore_lon_C ATP-depe 98.4 5.8E-07 1.2E-11 96.7 9.2 110 116-278 174-291 (615)
486 PRK14079 recF recombination pr 98.4 2.2E-07 4.7E-12 93.4 5.4 55 225-279 262-318 (349)
487 TIGR02546 III_secr_ATP type II 98.4 2.4E-07 5.2E-12 95.4 5.9 86 103-190 132-221 (422)
488 PRK10416 signal recognition pa 98.4 1.6E-07 3.5E-12 93.4 4.0 76 115-190 112-191 (318)
489 cd01136 ATPase_flagellum-secre 98.4 4.1E-07 8.9E-12 90.7 6.0 57 97-154 49-106 (326)
490 TIGR01420 pilT_fam pilus retra 98.4 4.2E-06 9.1E-11 83.9 12.9 39 114-152 119-158 (343)
491 PRK07960 fliI flagellum-specif 98.4 3.1E-07 6.8E-12 94.9 4.6 73 104-177 163-239 (455)
492 TIGR00554 panK_bact pantothena 98.3 4.8E-07 1E-11 88.9 5.2 71 118-192 63-135 (290)
493 TIGR00767 rho transcription te 98.3 8.3E-07 1.8E-11 90.6 6.4 53 91-143 130-194 (415)
494 PRK09270 nucleoside triphospha 98.3 8.6E-07 1.9E-11 83.6 5.8 69 115-190 31-103 (229)
495 PRK09099 type III secretion sy 98.3 8.4E-07 1.8E-11 91.7 5.7 51 103-154 150-200 (441)
496 TIGR02524 dot_icm_DotB Dot/Icm 98.3 8.2E-07 1.8E-11 89.7 5.2 119 115-236 132-269 (358)
497 TIGR03497 FliI_clade2 flagella 98.2 1.6E-06 3.4E-11 89.2 6.3 57 98-155 118-175 (413)
498 TIGR03498 FliI_clade3 flagella 98.2 1.3E-06 2.9E-11 89.8 5.8 63 92-155 115-178 (418)
499 TIGR03496 FliI_clade1 flagella 98.2 1.7E-06 3.8E-11 88.8 6.3 62 92-154 112-174 (411)
500 PF13555 AAA_29: P-loop contai 98.2 8.1E-07 1.7E-11 67.9 2.6 39 107-145 12-51 (62)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-68 Score=490.26 Aligned_cols=237 Identities=38% Similarity=0.644 Sum_probs=219.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+||+.++|+|||++|.+||+++||||||||||||||||+||.+|++|+|+++|+++.... +....|+++
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-hHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999999999999998764322 222234469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+|||+++|||++||.||+.++.....++++++.++.+.++|+++||.+..+.||.+|||||||||||||||+
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa------- 152 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA------- 152 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc-------
Confidence 9999999999999999999998876777899999999999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
++|+++|+|||||+|||+...++++.|++|+++| +|+|+|||+|.++.+.||||
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG----------mTMivVTHEM~FAr~Vadrv---------------- 206 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG----------MTMIIVTHEMGFAREVADRV---------------- 206 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC----------CeEEEEechhHHHHHhhheE----------------
Confidence 5799999999999999999999999999999998 79999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+||++|+|+++|++++++ +++++.+++|++.
T Consensus 207 --------------iFmd~G~iie~g~p~~~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 207 --------------IFMDQGKIIEEGPPEEFFDNPKSERTRQFLSK 238 (240)
T ss_pred --------------EEeeCCEEEEecCHHHHhcCCCCHHHHHHHHh
Confidence 999999999999999876 6788999999863
No 2
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-64 Score=473.48 Aligned_cols=247 Identities=47% Similarity=0.763 Sum_probs=231.1
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh-hccc
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-ISGL 167 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~-~~~~ 167 (382)
.+.|++++|+++||++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++........ ..+.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999999999999999999887654332 2244
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
++|++||+.+||.++||+||++|+++.+...+++.+++.+..-|+.+||... .+++|++|||||++|++|||||+.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial--- 162 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL--- 162 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc---
Confidence 6999999999999999999999999999889999999999999999999876 899999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|+||++||||+||||.+...+.++|++|++.-. .|++|||||++++..+|||+
T Consensus 163 ----dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg---------~T~i~VTHDl~s~~~i~Drv------------- 216 (263)
T COG1127 163 ----DPELLFLDEPTSGLDPISAGVIDELIRELNDALG---------LTVIMVTHDLDSLLTIADRV------------- 216 (263)
T ss_pred ----CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC---------CEEEEEECChHHHHhhhceE-------------
Confidence 5999999999999999999999999999998742 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcCCCCCCCC
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIR 381 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (382)
++|.+|||+|+|+++++....+|.+++|+.|..++|+.
T Consensus 217 -----------------~~L~~gkv~~~Gt~~el~~sd~P~v~qf~~G~~~gpi~ 254 (263)
T COG1127 217 -----------------AVLADGKVIAEGTPEELLASDDPWVRQFFNGIRDGPIP 254 (263)
T ss_pred -----------------EEEeCCEEEEeCCHHHHHhCCCHHHHHHhcCCCCCcee
Confidence 99999999999999999888999999999999999875
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-62 Score=469.35 Aligned_cols=239 Identities=37% Similarity=0.593 Sum_probs=219.5
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh-
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI- 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~- 164 (382)
||++++|+|.|.. ..+|+||||+|++||++||||.||||||||+|||++|.+|++|+|.++|+++..+.....+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6899999999975 4699999999999999999999999999999999999999999999999998876544322
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.|++|||+||+++|+...||++||+|++.. .+++++++++++.++|+.+||+++.++||.+|||||||||+|||||+.
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLei-ag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~- 158 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLEL-AGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN- 158 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhh-cCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc-
Confidence 344699999999999999999999999853 457889999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+|||.|||||+|||.+.+.++++|++++++-+ .||++|||.|+.++++||||
T Consensus 159 ------~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg---------lTIvlITHEm~Vvk~ic~rV----------- 212 (339)
T COG1135 159 ------NPKILLCDEATSALDPETTQSILELLKDINRELG---------LTIVLITHEMEVVKRICDRV----------- 212 (339)
T ss_pred ------CCCEEEecCccccCChHHHHHHHHHHHHHHHHcC---------CEEEEEechHHHHHHHhhhh-----------
Confidence 6999999999999999999999999999998742 69999999999999999999
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
.||++|+|+++|+..+++ .++++.+++|+....
T Consensus 213 -------------------avm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 213 -------------------AVLDQGRLVEEGTVSEVFANPKHAITQEFIGETL 246 (339)
T ss_pred -------------------eEeeCCEEEEeccHHHhhcCcchHHHHHHHHhhc
Confidence 999999999999999965 678999999998654
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.7e-62 Score=457.42 Aligned_cols=236 Identities=36% Similarity=0.561 Sum_probs=217.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|+++.+++++||+|++||++++||||||||||+||+|++|++|++|+|+++|+++....... + |++||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~-L-Rr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVE-L-RRKIG 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHH-H-HHhhh
Confidence 689999999999999999999999999999999999999999999999999999999999999987653322 2 34799
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc--ccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~--~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||-|...|||++||.|||++... ..++++++++++++|+|+.+||+ ++.+|||++|||||||||.+||||+.
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~-L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa----- 152 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPK-LLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA----- 152 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhh-hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhc-----
Confidence 99999999999999999998653 45688999999999999999997 48999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|+||||||||++|||.++..+++.+.+++++-+ +|||+||||++++.+++|||
T Consensus 153 --dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~---------kTivfVTHDidEA~kLadri--------------- 206 (309)
T COG1125 153 --DPPILLMDEPFGALDPITRKQLQEEIKELQKELG---------KTIVFVTHDIDEALKLADRI--------------- 206 (309)
T ss_pred --CCCeEeecCCccccChhhHHHHHHHHHHHHHHhC---------CEEEEEecCHHHHHhhhceE---------------
Confidence 6999999999999999999999999999998742 69999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++|+|++.++|.++. ++.+..+.+|+..+
T Consensus 207 ---------------~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 207 ---------------AVMDAGEIVQYDTPDEILANPANDFVEDFFGES 239 (309)
T ss_pred ---------------EEecCCeEEEeCCHHHHHhCccHHHHHHHhccc
Confidence 999999999999999975 67899999999865
No 5
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-61 Score=478.27 Aligned_cols=235 Identities=37% Similarity=0.609 Sum_probs=216.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+.|+++||+|+||+..+|+|+||+|++||+++|+||||||||||||+|+||+.|++|+|.++|+++..+.. .++.|
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp----~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP----EKRPI 79 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh----hhccc
Confidence 56999999999999999999999999999999999999999999999999999999999999999987532 23469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+|||+++|||+|||+|||+|++...+...++++++++.++|+.++|+++.+|+|++|||||||||||||||+.
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~------ 153 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP------ 153 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc------
Confidence 99999999999999999999999744445567788999999999999999999999999999999999999996
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++||||||+|+||...+.+++..++++.++-+ +|.|+||||.+++..++|||
T Consensus 154 -~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~g---------iT~i~VTHDqeEAl~msDrI---------------- 207 (352)
T COG3842 154 -EPKVLLLDEPLSALDAKLREQMRKELKELQRELG---------ITFVYVTHDQEEALAMSDRI---------------- 207 (352)
T ss_pred -CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcC---------CeEEEEECCHHHHhhhccce----------------
Confidence 6999999999999999999999999999987732 69999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|+|.+.|+|+|+. .+.+..+.+|+..
T Consensus 208 --------------~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~ 239 (352)
T COG3842 208 --------------AVMNDGRIEQVGTPEEIYERPATRFVADFIGE 239 (352)
T ss_pred --------------EEccCCceeecCCHHHHhhCcchHHHHHHhCc
Confidence 999999999999999975 5778888888863
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-59 Score=463.71 Aligned_cols=232 Identities=36% Similarity=0.582 Sum_probs=214.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+||+..+|+++||+|+.||+++|+||||||||||||+|+||++|++|+|+|+|+++..+.+. ++.|+
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~----~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE----KRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh----HCCEE
Confidence 58999999999976699999999999999999999999999999999999999999999999998775332 34699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||+++|||+|||+||++|++. ..+.++++++++++++++.++|+++++++|.+|||||||||||||||++
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk-~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr------- 150 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLK-LRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR------- 150 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhh-hCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc-------
Confidence 99999999999999999999985 3456788999999999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|+++|||||+|+||...+..+...|++++++-+ .|+|+||||..++..++|||
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~---------~T~IYVTHDq~EAmtladri----------------- 204 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG---------TTTIYVTHDQVEAMTLADRI----------------- 204 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcC---------CcEEEEcCCHHHHHhhCCEE-----------------
Confidence 6999999999999999999999999999998742 69999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|.+.|+|.|+. .+.+..+..|+.
T Consensus 205 -------------~Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG 235 (338)
T COG3839 205 -------------VVMNDGRIQQVGTPLELYERPANLFVAGFIG 235 (338)
T ss_pred -------------EEEeCCeeeecCChHHHhhCccchhhhhhcC
Confidence 999999999999999976 677888888876
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-59 Score=443.37 Aligned_cols=220 Identities=38% Similarity=0.594 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.++++++|+++|++..+|+|+||+|++||+++||||||||||||||+|+||.+|++|+|.++|+.+... ...+
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-------~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-------GPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-------CCCE
Confidence 358999999999999999999999999999999999999999999999999999999999999886321 2259
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.|||.+||+|||.+++... +.+.++..++++++|+.+||.++.+++|++|||||||||+|||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~-~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~------ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELR-GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT------ 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhcc-ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc------
Confidence 99999999999999999999988532 34566667789999999999999999999999999999999999996
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc-cccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI-FGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~-~~~~~~~~~~ 328 (382)
+|+||||||||++||..++..+++.+.++.++.+ .|+++||||++++..++|||++|.. +|+|..++-|
T Consensus 148 -~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~---------~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i 217 (248)
T COG1116 148 -RPKLLLLDEPFGALDALTREELQDELLRLWEETR---------KTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEI 217 (248)
T ss_pred -CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC---------CEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEec
Confidence 6999999999999999999999999999987642 5999999999999999999955543 2555555555
Q ss_pred ccCCC
Q 016804 329 GAVAP 333 (382)
Q Consensus 329 ~~~~~ 333 (382)
...+|
T Consensus 218 ~l~rp 222 (248)
T COG1116 218 DLPRP 222 (248)
T ss_pred CCCCC
Confidence 55444
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.1e-58 Score=439.35 Aligned_cols=233 Identities=37% Similarity=0.551 Sum_probs=205.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+++++||+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++..+.. .+.++ ++|
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~-kelAk-~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSP-KELAK-KLA 79 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCH-HHHhh-hEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999887643 33333 699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCC---CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKM---RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~---~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
||||.+...+.+||+|-+.++.+.+.++ ..++.++.+.++|+.+|+.++.+|...+|||||||||.|||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ---- 155 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ---- 155 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc----
Confidence 9999987777799999999987654322 234445578999999999999999999999999999999999998
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||..++.++++++++++++.+ +|+|+|+||++.+.++||++
T Consensus 156 ---~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~---------~tvv~vlHDlN~A~ryad~~-------------- 209 (258)
T COG1120 156 ---ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG---------LTVVMVLHDLNLAARYADHL-------------- 209 (258)
T ss_pred ---CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC---------CEEEEEecCHHHHHHhCCEE--------------
Confidence 6999999999999999999999999999996621 69999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|+++++|+|+++.++ +.+.+.+.
T Consensus 210 ----------------i~lk~G~i~a~G~p~evlT~--e~l~~Vyg 237 (258)
T COG1120 210 ----------------ILLKDGKIVAQGTPEEVLTE--ENLREVYG 237 (258)
T ss_pred ----------------EEEECCeEEeecCcchhcCH--HHHHHHhC
Confidence 99999999999999998753 34444443
No 9
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-58 Score=423.72 Aligned_cols=238 Identities=31% Similarity=0.508 Sum_probs=213.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-----cEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-----GEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s-----G~I~i~G~~i~~~~~~~~ 163 (382)
.+.++++||++.||++++|+|||++|++++++|||||||||||||||++.++.+... |+|.++|+++.....+..
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 356999999999999999999999999999999999999999999999999988764 999999999876432322
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
.-|++||+|||.|+.|| +|++|||+|+...+...+ ++.++.++..|+.+.|. +.+++.+..||||||||++|||
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 23457999999999999 899999999987665444 78899999999999995 4667788999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+- +|+|||||||||+|||.+...+.++|.+|+++ -|||+|||+|..+.+++|+.
T Consensus 163 alAv-------~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~-----------yTIviVTHnmqQAaRvSD~t------ 218 (253)
T COG1117 163 ALAV-------KPEVLLMDEPTSALDPISTLKIEELITELKKK-----------YTIVIVTHNMQQAARVSDYT------ 218 (253)
T ss_pred HHhc-------CCcEEEecCcccccCchhHHHHHHHHHHHHhc-----------cEEEEEeCCHHHHHHHhHhh------
Confidence 9985 79999999999999999999999999999876 49999999999999999999
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
+|+..|++++.|.+++++ ++++..+.+++.|..
T Consensus 219 ------------------------aFf~~G~LvE~g~T~~iF~~P~~~~TedYisGrf 252 (253)
T COG1117 219 ------------------------AFFYLGELVEFGPTDKIFTNPKHKRTEDYISGRF 252 (253)
T ss_pred ------------------------hhhcccEEEEEcCHHhhhcCccHHHHHHHhccCC
Confidence 899999999999999965 678899999999864
No 10
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-57 Score=438.10 Aligned_cols=234 Identities=38% Similarity=0.609 Sum_probs=210.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---ECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR---KRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~---~i~~~~~~~~~~~ 166 (382)
++|+++|++|.|+...+++||||+|+.||.+||+||||||||||||+|+||+.|++|.|.++|+ |... ...+.
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~----~~~~~ 76 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN----LAVRD 76 (345)
T ss_pred CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc----cchhh
Confidence 3689999999999999999999999999999999999999999999999999999999999999 5432 12233
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
++||||||++.||++|||.+||+|++...+ ..++.+++.++.++|+.+.|+++.++||.+|||||||||||||||+-
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~-- 154 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV-- 154 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc--
Confidence 479999999999999999999999985442 24567888999999999999999999999999999999999999985
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++||||||+++||...+.++..-|++++++-+ .|.++||||.+++.++||||
T Consensus 155 -----eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~---------~ttvfVTHD~eea~~ladrv------------ 208 (345)
T COG1118 155 -----EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG---------VTTVFVTHDQEEALELADRV------------ 208 (345)
T ss_pred -----CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC---------ceEEEEeCCHHHHHhhcceE------------
Confidence 7999999999999999999999999999988722 59999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|...|++.|+. .+..+.+-.|..
T Consensus 209 ------------------vvl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G 239 (345)
T COG1118 209 ------------------VVLNQGRIEQVGPPDEVYDHPASRFVARFLG 239 (345)
T ss_pred ------------------EEecCCeeeeeCCHHHHhcCCCccceecccc
Confidence 999999999999999975 456666666654
No 11
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.2e-56 Score=418.15 Aligned_cols=205 Identities=38% Similarity=0.601 Sum_probs=179.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--hh
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EI 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~~ 164 (382)
+++++||+|.|+. .++|++|||+|++||+++|+|||||||||||++|.|+.+|++|+|+++|+++..+.... ..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4789999999964 37999999999999999999999999999999999999999999999999988764332 23
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc-CCCCCCChHHHHHHHHHHHHhc
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-RLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~-~~~~~LSGGqrQRVaIArAL~~ 243 (382)
++.+||||||+++|+|.+||.|||.+++.. .+.......+++.++++.+||.+..+ ++|.+|||||||||||||||++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~-~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLI-AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHH-cCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 344699999999999999999999987743 33333356777889999999997666 8999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++||.||||++||..+.++++++|++++++.+ +|+||||||...+. +|||+
T Consensus 160 -------~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g---------~tii~VTHd~~lA~-~~dr~ 212 (226)
T COG1136 160 -------NPKIILADEPTGNLDSKTAKEVLELLRELNKERG---------KTIIMVTHDPELAK-YADRV 212 (226)
T ss_pred -------CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcC---------CEEEEEcCCHHHHH-hCCEE
Confidence 6999999999999999999999999999987731 59999999988776 67877
No 12
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.2e-55 Score=439.36 Aligned_cols=236 Identities=33% Similarity=0.557 Sum_probs=208.9
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh-hc
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-IS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~-~~ 165 (382)
||+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........ ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999952 479999999999999999999999999999999999999999999999999865432221 12
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+.+|||+||++.+|+.+||+||+.+++.. .+.+..+..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~-- 157 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL-DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS-- 157 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh--
Confidence 34699999999999999999999987642 234556677888999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||++||+.++..++++|++++++ | .|||+|||+++.+.++|||+
T Consensus 158 -----~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g----------~tiiliTH~~~~v~~~~d~v----------- 211 (343)
T TIGR02314 158 -----NPKVLLCDEATSALDPATTQSILELLKEINRRLG----------LTILLITHEMDVVKRICDCV----------- 211 (343)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999876 5 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|+|++.|++.++. .+.++.++.|+..
T Consensus 212 -------------------~vl~~G~iv~~g~~~~v~~~p~~~~~~~~~~~ 243 (343)
T TIGR02314 212 -------------------AVISNGELIEQGTVSEIFSHPKTPLAQKFIRS 243 (343)
T ss_pred -------------------EEEECCEEEEEcCHHHHHcCCCcHHHHHHHhh
Confidence 999999999999988875 4567788887754
No 13
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-56 Score=421.50 Aligned_cols=219 Identities=35% Similarity=0.570 Sum_probs=193.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++|++++|+++++|+||||+|++|++++||||||||||||+|+|+|+++|++|+|.++|++.... ..+.+|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~-----~~~~~I 77 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR-----RKRLRI 77 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc-----ccCCeE
Confidence 579999999999966899999999999999999999999999999999999999999999999875331 123479
Q ss_pred EEEecCCC---CCCCCCHHHHHHhhHhhcCCC---CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 170 GLVFQSAA---LFDSLTVRENVGFLLYENSKM---RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 170 g~V~Q~~~---l~~~lTV~eni~~~~~~~~~~---~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
|||||... -|| +||+|.+..+.+...++ ..++..+.+.++|+++|+.++.++...+|||||+|||.|||||++
T Consensus 78 gYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~ 156 (254)
T COG1121 78 GYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ 156 (254)
T ss_pred EEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc
Confidence 99999653 366 79999999986544321 123336789999999999999999999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|++|+|||||+|+|+.++..+.++|++|+++| +||+|||||++.+..++|+|
T Consensus 157 -------~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg----------~tIl~vtHDL~~v~~~~D~v---------- 209 (254)
T COG1121 157 -------NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG----------KTVLMVTHDLGLVMAYFDRV---------- 209 (254)
T ss_pred -------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCcHHhHhhCCEE----------
Confidence 699999999999999999999999999999987 69999999999999999988
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
+.|+ ++++..|+++++.+
T Consensus 210 --------------------i~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 210 --------------------ICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred --------------------EEEc-CeeEeccChhhccC
Confidence 7774 57889999999874
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-56 Score=415.34 Aligned_cols=226 Identities=34% Similarity=0.556 Sum_probs=202.2
Q ss_pred ceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh-ccc
Q 016804 90 VLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI-SGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~-~~~ 167 (382)
++|+++||++.| +++++|++|||+|++||+++||||||||||||||+|+|+++|++|+|.++|.++..+...... .+.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 579999999999 788999999999999999999999999999999999999999999999999998776544321 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcC-------CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArA 240 (382)
+|||+||+++|.+.+||.+|+..+...+. ++..++.+..+.++|+++|+.+.+.++..+|||||||||+||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa 161 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA 161 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence 69999999999999999999998753221 23334556778899999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|++ +|+|||.|||+|+|||.+.+.+++.|++++++.+ .|+|+..|+++.++++|||+
T Consensus 162 L~Q-------~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g---------~Tvi~nLH~vdlA~~Y~~Ri------- 218 (258)
T COG3638 162 LVQ-------QPKIILADEPVASLDPESAKKVMDILKDINQEDG---------ITVIVNLHQVDLAKKYADRI------- 218 (258)
T ss_pred Hhc-------CCCEEecCCcccccChhhHHHHHHHHHHHHHHcC---------CEEEEEechHHHHHHHHhhh-------
Confidence 998 5999999999999999999999999999987632 69999999999999999999
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
+-|++|+|+++|++.++.
T Consensus 219 -----------------------igl~~G~ivfDg~~~el~ 236 (258)
T COG3638 219 -----------------------IGLKAGRIVFDGPASELT 236 (258)
T ss_pred -----------------------eEecCCcEEEeCChhhhh
Confidence 999999999999888854
No 15
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-55 Score=414.35 Aligned_cols=236 Identities=32% Similarity=0.510 Sum_probs=207.4
Q ss_pred ceEEEEeEEEEeCCee----eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 90 VLIDCRNVYKSFGEKH----ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~----iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
++|+++|+++.|+.+. +|++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|+++|++........ ..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~-~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK-AF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch-hh
Confidence 5799999999998877 999999999999999999999999999999999999999999999998765432222 12
Q ss_pred cceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHh
Q 016804 166 GLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 166 ~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
...|.+|||||+ |.|..||.+-|..++..+ +.++ .++++.++|+.+||. .+++|+|.+|||||+|||||||||+
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccC-CccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 235999999985 789999999998887532 2333 345589999999996 6899999999999999999999998
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++||||||||+||+..+.+++++|.+++++.. .|+|+||||+..+..+||||
T Consensus 158 ~-------~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~---------lt~l~IsHdl~~v~~~cdRi--------- 212 (252)
T COG1124 158 P-------EPKLLILDEPTSALDVSVQAQILNLLLELKKERG---------LTYLFISHDLALVEHMCDRI--------- 212 (252)
T ss_pred c-------CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC---------ceEEEEeCcHHHHHHHhhhe---------
Confidence 5 7999999999999999999999999999988742 59999999999999999998
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcCC
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGS 375 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~ 375 (382)
+||++|++++.+++.++.+ +.+++++.++...
T Consensus 213 ---------------------~Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~ 245 (252)
T COG1124 213 ---------------------AVMDNGQIVEIGPTEELLSHPSHPYTRELLEAV 245 (252)
T ss_pred ---------------------eeeeCCeEEEeechhhhhcCCccHHHHHHHHhh
Confidence 9999999999999988764 5899999887643
No 16
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-55 Score=411.99 Aligned_cols=232 Identities=55% Similarity=0.889 Sum_probs=200.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccceEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~Ig 170 (382)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ...+.+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 47899999999889999999999999999999999999999999999999999999999999875432110 11233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+||+||+.++.........++..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~------- 153 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL------- 153 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998865322223455556778899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.+.|+++.++ + .|||+||||++++..+|||+
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~vsH~~~~~~~~~d~v---------------- 207 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG----------LTSIMVTHDLDTAFAIADRI---------------- 207 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhcCEE----------------
Confidence 69999999999999999999999999999874 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHH
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQ 370 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~ 370 (382)
++|++|++++.|+++++....+++++.
T Consensus 208 --------------~~l~~G~i~~~g~~~~~~~~~~~~~~~ 234 (235)
T cd03261 208 --------------AVLYDGKIVAEGTPEELRASDDPLVRQ 234 (235)
T ss_pred --------------EEEECCeEEEecCHHHHcCCCChhhhc
Confidence 999999999999888876555555543
No 17
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-55 Score=438.60 Aligned_cols=231 Identities=33% Similarity=0.543 Sum_probs=207.3
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+|+++||+|+| +++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~---~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PA---DRDI 78 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HH---HCCE
Confidence 59999999999 7888999999999999999999999999999999999999999999999999986532 21 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+|+++||+||+.|++.. .+.+..+..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~------ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKI-RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR------ 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhh-cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 9999999999999999999998643 234556667788999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+.++..+.+.|+++.++ + +|+|+||||++++..+|||+
T Consensus 152 -~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tii~vTHd~~ea~~l~D~i--------------- 205 (356)
T PRK11650 152 -EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLK----------TTSLYVTHDQVEAMTLADRV--------------- 205 (356)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE---------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. .+.++.+..|..
T Consensus 206 ---------------~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 206 ---------------VVMNGGVAEQIGTPVEVYEKPASTFVASFIG 236 (356)
T ss_pred ---------------EEEeCCEEEEECCHHHHHhCCccHHHHHHcC
Confidence 999999999999998875 455667766664
No 18
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-55 Score=436.57 Aligned_cols=232 Identities=34% Similarity=0.583 Sum_probs=209.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++|
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~---~~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-I---QQRDI 80 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-H---HHCCE
Confidence 4799999999999889999999999999999999999999999999999999999999999999986432 1 23469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+|+++||+||+.|++.. .+.+..+..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~-~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~------ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKM-LGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL------ 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhH-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 9999999999999999999998743 235566677889999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+..+.++.+.|+++.++ + .|+|+||||++++..+||||
T Consensus 154 -~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tii~vTHd~~e~~~laD~i--------------- 207 (351)
T PRK11432 154 -KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN----------ITSLYVTHDQSEAFAVSDTV--------------- 207 (351)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEE---------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|..
T Consensus 208 ---------------~vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g 238 (351)
T PRK11432 208 ---------------IVMNKGKIMQIGSPQELYRQPASRFMASFMG 238 (351)
T ss_pred ---------------EEEECCEEEEEcCHHHHHhCCCchHHHHhcC
Confidence 999999999999998875 456677777765
No 19
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=5.5e-55 Score=436.27 Aligned_cols=232 Identities=36% Similarity=0.598 Sum_probs=208.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... . .+++|
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~---~~r~i 78 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-P---QKRDY 78 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-H---HHCCE
Confidence 4699999999999888999999999999999999999999999999999999999999999999876432 2 13369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+||++||+||+.|++.. .+.+..+..+++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~-~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~------ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKN-RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT------ 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 9999999999999999999998643 234556677889999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+..+.++.+.|+++.++ + .|+|+||||++++..+|||+
T Consensus 152 -~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~----------~tvi~vTHd~~ea~~l~d~i--------------- 205 (353)
T TIGR03265 152 -SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG----------VTTIMVTHDQEEALSMADRI--------------- 205 (353)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEE---------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. .+.+..+.+|..
T Consensus 206 ---------------~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 236 (353)
T TIGR03265 206 ---------------VVMNHGVIEQVGTPQEIYRHPATPFVADFVG 236 (353)
T ss_pred ---------------EEEECCEEEEEcCHHHHHhCCCCHHHHHhcC
Confidence 999999999999998875 455677776664
No 20
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.7e-56 Score=402.53 Aligned_cols=217 Identities=39% Similarity=0.566 Sum_probs=199.0
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccce
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~ 168 (382)
||+++||+|.|++ .++|+||||+|++||++-|+||||||||||||+|.+..+|++|+|+++|.++..+...+ ..-+++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 6899999999964 55999999999999999999999999999999999999999999999999998764433 123457
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||+||||..|.+++||+||++|++. ..+..+.++++++.++|+.+||.+..+..|.+|||||||||+||||+++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~-v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~----- 154 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLR-VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN----- 154 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc-----
Confidence 9999999999999999999999885 3457788999999999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++||.||||.+|||....++++++.++++.| +||||+|||.+.+.++--|+
T Consensus 155 --~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G----------tTVl~ATHd~~lv~~~~~rv--------------- 207 (223)
T COG2884 155 --QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG----------TTVLMATHDLELVNRMRHRV--------------- 207 (223)
T ss_pred --CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC----------cEEEEEeccHHHHHhccCcE---------------
Confidence 699999999999999999999999999999988 69999999999999987666
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
+.|++|+++...
T Consensus 208 ---------------l~l~~Grl~~d~ 219 (223)
T COG2884 208 ---------------LALEDGRLVRDE 219 (223)
T ss_pred ---------------EEEeCCEEEecc
Confidence 999999998765
No 21
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.1e-54 Score=437.22 Aligned_cols=236 Identities=33% Similarity=0.564 Sum_probs=210.8
Q ss_pred CCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+...++|+++||+++|+++++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.... . .
T Consensus 9 ~~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~---~ 84 (375)
T PRK09452 9 SSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-A---E 84 (375)
T ss_pred ccCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-H---H
Confidence 34456799999999999889999999999999999999999999999999999999999999999999976432 1 1
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+++||||||++.+||++||+||+.|++.. .+.+..+.++++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~-- 161 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRM-QKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN-- 161 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc--
Confidence 23699999999999999999999998642 234556667788999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||++||+..+..+.+.|+++.++ + .|+|+||||++++..+|||+
T Consensus 162 -----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g----------~tiI~vTHd~~ea~~laDri----------- 215 (375)
T PRK09452 162 -----KPKVLLLDESLSALDYKLRKQMQNELKALQRKLG----------ITFVFVTHDQEEALTMSDRI----------- 215 (375)
T ss_pred -----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+.+|..
T Consensus 216 -------------------~vl~~G~i~~~g~~~~i~~~p~~~~~a~~~g 246 (375)
T PRK09452 216 -------------------VVMRDGRIEQDGTPREIYEEPKNLFVARFIG 246 (375)
T ss_pred -------------------EEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999999999999988875 456677777665
No 22
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.5e-54 Score=432.87 Aligned_cols=230 Identities=32% Similarity=0.537 Sum_probs=207.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc--cEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK--GEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s--G~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+|+|+++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|+++|+++.... . .+++|
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~---~~r~i 81 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-P---HKRGL 81 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-H---HHCCE
Confidence 899999999998889999999999999999999999999999999999999999 99999999875432 1 12369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+|+++||+||+.|++... +.+..+..+++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~------ 154 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI------ 154 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 99999999999999999999987432 35566677789999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK--GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~--g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+..+.++.+.|+++.++ | .|+|+||||++++..+||||
T Consensus 155 -~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g----------~til~vTHd~~ea~~l~dri-------------- 209 (362)
T TIGR03258 155 -EPDVLLLDEPLSALDANIRANMREEIAALHEELPE----------LTILCVTHDQDDALTLADKA-------------- 209 (362)
T ss_pred -CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. .+.+..+..|..
T Consensus 210 ----------------~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 240 (362)
T TIGR03258 210 ----------------GIMKDGRLAAHGEPQALYDAPADGFAAEFLG 240 (362)
T ss_pred ----------------EEEECCEEEEEcCHHHHHhCcCcHHHHHhhC
Confidence 999999999999999875 445666766665
No 23
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.4e-54 Score=430.58 Aligned_cols=232 Identities=34% Similarity=0.567 Sum_probs=207.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~---~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-A---RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-H---HHCCEE
Confidence 589999999999889999999999999999999999999999999999999999999999999975431 1 223699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
||||++.+|+++||+||+.|++... ...+.++..+++.++++.++|.++.+++|.+|||||||||+|||||+.
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~---- 153 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV---- 153 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc----
Confidence 9999999999999999999976421 123455667789999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+.++..+.+.|+++.++ + +|+|+||||++++..+||||
T Consensus 154 ---~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g----------~tii~vTHd~~ea~~~~Dri------------- 207 (353)
T PRK10851 154 ---EPQILLLDEPFGALDAQVRKELRRWLRQLHEELK----------FTSVFVTHDQEEAMEVADRV------------- 207 (353)
T ss_pred ---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.++.+..|..
T Consensus 208 -----------------~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 238 (353)
T PRK10851 208 -----------------VVMSQGNIEQAGTPDQVWREPATRFVLEFMG 238 (353)
T ss_pred -----------------EEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 999999999999988875 456677777654
No 24
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-54 Score=410.35 Aligned_cols=224 Identities=40% Similarity=0.621 Sum_probs=200.7
Q ss_pred ceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++++++|++++|++. .+|+++||+|++||+++|+||||||||||+++++|+++|++|+|.++|.++........ .+.+
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~-~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE-LRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH-hhcc
Confidence 478999999999765 89999999999999999999999999999999999999999999999998642111122 2346
Q ss_pred EEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 169 IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 169 Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
||||||+| .+|. -||++.++|++. +.+.+++++++++.++++.+|+.+++++.|.+|||||||||+||.+|+.
T Consensus 81 vG~VfQnpd~q~~~-~tV~~evafg~~-n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~--- 155 (235)
T COG1122 81 VGLVFQNPDDQLFG-PTVEDEVAFGLE-NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM--- 155 (235)
T ss_pred eEEEEECccccccc-CcHHHHHhhchh-hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc---
Confidence 99999998 4564 699999999984 4557777899999999999999999999999999999999999999985
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++||||||||+||+.+++++++++++|+++++ +|+|++|||++++..+|||+
T Consensus 156 ----~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~---------~tii~~tHd~~~~~~~ad~v------------- 209 (235)
T COG1122 156 ----GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGG---------KTIIIVTHDLELVLEYADRV------------- 209 (235)
T ss_pred ----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC---------CeEEEEeCcHHHHHhhCCEE-------------
Confidence 7999999999999999999999999999998842 69999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++.+|++.+++.
T Consensus 210 -----------------~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 210 -----------------VVLDDGKILADGDPAEIFN 228 (235)
T ss_pred -----------------EEEECCEEeecCCHHHHhh
Confidence 9999999999999888764
No 25
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-53 Score=430.19 Aligned_cols=234 Identities=32% Similarity=0.511 Sum_probs=208.3
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++|++|+|++..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~---~~r~ 92 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-P---YQRP 92 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-H---HHCC
Confidence 45799999999999888999999999999999999999999999999999999999999999999875432 1 2336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||||||++.+|+++||+||+.|++... +.+..+..+++.++++.++|.++.+++|.+|||||||||+|||||+.
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~----- 166 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK----- 166 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999986432 34556677889999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+..+..+.+.|+++.++.+ .|+|+||||++++..+|||+
T Consensus 167 --~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g---------~tii~vTHd~~ea~~laDri--------------- 220 (377)
T PRK11607 167 --RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG---------VTCVMVTHDQEEAMTMAGRI--------------- 220 (377)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC---------CEEEEEcCCHHHHHHhCCEE---------------
Confidence 6999999999999999999999999999876521 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. .+.+..+.+|..
T Consensus 221 ---------------~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 251 (377)
T PRK11607 221 ---------------AIMNRGKFVQIGEPEEIYEHPTTRYSAEFIG 251 (377)
T ss_pred ---------------EEEeCCEEEEEcCHHHHHhCCccHHHHHhcC
Confidence 999999999999998875 455666666654
No 26
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-55 Score=421.09 Aligned_cols=237 Identities=37% Similarity=0.587 Sum_probs=216.4
Q ss_pred eEEEEeEEEEeCCe------------------------eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 016804 91 LIDCRNVYKSFGEK------------------------HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (382)
Q Consensus 91 ~I~~~nvs~~yg~~------------------------~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG 146 (382)
.|+++||+|-||.+ .-++|+||+|++||++.|+|=||||||||+|+|++|++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 48899999999742 248999999999999999999999999999999999999999
Q ss_pred EEEECCEECCCCCChh--hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC
Q 016804 147 EVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224 (382)
Q Consensus 147 ~I~i~G~~i~~~~~~~--~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~ 224 (382)
+|+++|+++....... +.++.++++|||+..|+|+.||.||+.|++ ...+.++++.++++.++|+.+||+++.++||
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGL-ev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGL-EVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcce-eecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 9999999998764333 234456999999999999999999999998 4567888899999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
++|||||||||.|||||+. +|+|||+|||||+|||--+.++++.|.+|.++-+ +|||+||||++
T Consensus 163 ~eLSGGMqQRVGLARAla~-------~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~---------KTIvFitHDLd 226 (386)
T COG4175 163 NELSGGMQQRVGLARALAN-------DPDILLMDEAFSALDPLIRTEMQDELLELQAKLK---------KTIVFITHDLD 226 (386)
T ss_pred ccccchHHHHHHHHHHHcc-------CCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC---------CeEEEEecCHH
Confidence 9999999999999999986 5999999999999999999999999999988743 69999999999
Q ss_pred HHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc-ccCCCHHHHHHHcC
Q 016804 305 TIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF-TSSSNPIVQQFASG 374 (382)
Q Consensus 305 ~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~-~~~~~~~~~~~~~~ 374 (382)
++.++.||| .+|++|+|++.|+|+|+ .++.+.|+.+|..+
T Consensus 227 EAlriG~rI------------------------------aimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 227 EALRIGDRI------------------------------AIMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred HHHhccceE------------------------------EEecCCeEEEeCCHHHHHcCccHHHHHHHHhc
Confidence 999999988 99999999999999996 47899999999986
No 27
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=8.1e-54 Score=419.93 Aligned_cols=221 Identities=35% Similarity=0.573 Sum_probs=198.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++... ... .+.+|
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~--~~~-~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR--ARH-ARQRV 82 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc--hHH-HHhcE
Confidence 579999999999988999999999999999999999999999999999999999999999999987532 112 23469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
||+||++.+|+.+||+||+.+.... .+.+..+..+++.++++.++|.+..++++++||||||||++|||||++
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~------ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRY-FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN------ 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC------
Confidence 9999999999999999999875432 234445556778899999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..++++|++++++| +|||++||+++++.++||||
T Consensus 156 -~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~till~sH~l~e~~~~~d~i---------------- 208 (306)
T PRK13537 156 -DPDVLVLDEPTTGLDPQARHLMWERLRSLLARG----------KTILLTTHFMEEAERLCDRL---------------- 208 (306)
T ss_pred -CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE----------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 209 --------------~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 209 --------------CVIEEGRKIAEGAPHALI 226 (306)
T ss_pred --------------EEEECCEEEEECCHHHHH
Confidence 999999999999888764
No 28
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.7e-53 Score=422.13 Aligned_cols=240 Identities=29% Similarity=0.517 Sum_probs=209.1
Q ss_pred CcceEEEEeEEEEeCC-------------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 88 GDVLIDCRNVYKSFGE-------------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~-------------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
.+++|+++||+++|+. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|++
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 3578999999999962 469999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhh-hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCCh
Q 016804 155 RAGLISDEE-ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSG 229 (382)
Q Consensus 155 i~~~~~~~~-~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSG 229 (382)
+........ ..+.+|+||||++ .+++.+||++|+.+++..+. ..+.++..+++.++++.++|. +..+++|.+|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 865432211 1233699999998 58989999999998764332 345666777889999999995 578999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
||||||+|||||+. +|++||+||||++||+.++.++.++|++++++ + .|+|+||||++.+.+
T Consensus 165 G~~QRv~iArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~----------~til~iTHdl~~~~~ 227 (331)
T PRK15079 165 GQCQRIGIARALIL-------EPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG----------LSLIFIAHDLAVVKH 227 (331)
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHH
Confidence 99999999999997 69999999999999999999999999999875 4 599999999999999
Q ss_pred hhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 309 AVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 309 ~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+|||| ++|++|+|++.|+++++. .+.+++++.++..
T Consensus 228 ~~dri------------------------------~vl~~G~ive~g~~~~i~~~~~~py~~~l~~~ 264 (331)
T PRK15079 228 ISDRV------------------------------LVMYLGHAVELGTYDEVYHNPLHPYTKALMSA 264 (331)
T ss_pred hCCEE------------------------------EEEECCEEEEEcCHHHHHcCCCCHHHHHHHhh
Confidence 99988 999999999999888875 5678999887753
No 29
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.2e-54 Score=389.60 Aligned_cols=221 Identities=37% Similarity=0.591 Sum_probs=196.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||.+++|.++|+..+ =.++++|+.||++||+|||||||||||++|+||+.|.+|+|+|+|++.....+ ..+-++
T Consensus 1 ~l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P----~~RPVS 74 (231)
T COG3840 1 MLALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP----AERPVS 74 (231)
T ss_pred CccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc----ccCChh
Confidence 477899999998654 36788999999999999999999999999999999999999999999765322 233599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
++||+.+||.++||.+||.+++...-..+ .+.+++++.++.++||.++.+|.|.+|||||||||||||+|++
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR------- 146 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR------- 146 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhc-------
Confidence 99999999999999999999875433344 3456788999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+-+|||||||||+|||..+.++..++.+++.+.+ .|++||||+.+++.+++||+
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~---------~TllmVTH~~~Da~~ia~~~----------------- 200 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERK---------MTLLMVTHHPEDAARIADRV----------------- 200 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC---------CEEEEEeCCHHHHHHhhhce-----------------
Confidence 5899999999999999999999999999998743 69999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
+++++|||.|+|++.+++...
T Consensus 201 -------------~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 201 -------------VFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred -------------EEEeCCEEEeeccHHHHhccC
Confidence 999999999999999987543
No 30
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-53 Score=426.14 Aligned_cols=231 Identities=33% Similarity=0.547 Sum_probs=205.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~---~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-P---AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-H---hHCCEE
Confidence 489999999999889999999999999999999999999999999999999999999999999875432 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++... +....+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~------- 150 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA------- 150 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999876422 34455566788999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+.++..+.+.|+++.++ + .|+|+||||++++..+|||+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tvI~vTHd~~~~~~~~d~i---------------- 204 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG----------RTMIYVTHDQVEAMTLADKI---------------- 204 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999775 4 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. .+.+..+..|+.
T Consensus 205 --------------~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 235 (369)
T PRK11000 205 --------------VVLDAGRVAQVGKPLELYHYPANRFVAGFIG 235 (369)
T ss_pred --------------EEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999999999999988875 455667776665
No 31
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-53 Score=416.14 Aligned_cols=220 Identities=38% Similarity=0.659 Sum_probs=197.4
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+++++||+|+|+ ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.... ... .+.+|
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~-~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAK-VRRRI 80 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHH-HHhhe
Confidence 588999999999 69999999999999999999999999999999999999999999999999986531 111 23469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
||+||++.+++.+||+||+.|....+.. .....+++++++++.+||.+..++++++||+|||||++||+||++
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~------ 153 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH------ 153 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc------
Confidence 9999999999999999999997754432 224456788999999999987788999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+||||.++.++.++|++++++|+ +||+++||.++++..+||||
T Consensus 154 -~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~---------~tvlissH~l~e~~~~~d~v---------------- 207 (293)
T COG1131 154 -DPELLILDEPTSGLDPESRREIWELLRELAKEGG---------VTILLSTHILEEAEELCDRV---------------- 207 (293)
T ss_pred -CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC---------cEEEEeCCcHHHHHHhCCEE----------------
Confidence 6999999999999999999999999999998863 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|++.++
T Consensus 208 --------------~il~~G~~~~~g~~~~l 224 (293)
T COG1131 208 --------------IILNDGKIIAEGTPEEL 224 (293)
T ss_pred --------------EEEeCCEEEEeCCHHHH
Confidence 99999999999977765
No 32
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5e-53 Score=398.30 Aligned_cols=236 Identities=36% Similarity=0.564 Sum_probs=202.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++|++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..........+.+++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 58899999999988999999999999999999999999999999999999999999999999987532111111233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+++.+||+||+.+......+....+..+.+.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------- 153 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV------- 153 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc-------
Confidence 9999999998899999998754222223445556678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|++|||||||+|||+.++..+.++|+++++++ +|+|++||+++++..+|||+
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i----------------- 206 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG----------MTMVIVTHEIGFAEKVASRL----------------- 206 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE-----------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|++.++.. +..+.+.+++.
T Consensus 207 -------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 237 (240)
T PRK09493 207 -------------IFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQ 237 (240)
T ss_pred -------------EEEECCEEEeeCCHHHHhcCCchHHHHHHhh
Confidence 9999999999998887753 34555666554
No 33
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-54 Score=404.33 Aligned_cols=236 Identities=34% Similarity=0.592 Sum_probs=213.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+++++++|+|+||+-.+++||||++++||+++||||||||||||+|+|+|+++|++|+|.++|+++..+ +...+.+..|
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l-~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL-PPHRIARLGI 81 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCC-CHHHHHhccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999876 4444566679
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcC-----------CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENS-----------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~-----------~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA 238 (382)
+--||.+.+|++|||.||++.+...+. ....++..+++.++|+.+||.+..+++..+||+|||+|+.||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 999999999999999999998743210 013567788899999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++||||||.|||.+....++.++|+++++++. .||++|.|||+.+.++||||
T Consensus 162 rALa~-------~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g---------~tillIEHdM~~Vm~l~dri----- 220 (250)
T COG0411 162 RALAT-------QPKLLLLDEPAAGLNPEETEELAELIRELRDRGG---------VTILLIEHDMKLVMGLADRI----- 220 (250)
T ss_pred HHHhc-------CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCC---------cEEEEEEeccHHHhhhccEE-----
Confidence 99996 6999999999999999999999999999998642 69999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
+||+.|+++++|+|+++. .+|.+.+.|-|
T Consensus 221 -------------------------~Vl~~G~~IAeG~P~eV~--~dp~VieAYLG 249 (250)
T COG0411 221 -------------------------VVLNYGEVIAEGTPEEVR--NNPRVIEAYLG 249 (250)
T ss_pred -------------------------EeccCCcCcccCCHHHHh--cCHHhHHHhcC
Confidence 999999999999999987 46777766654
No 34
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8.6e-53 Score=404.57 Aligned_cols=237 Identities=35% Similarity=0.629 Sum_probs=203.9
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccce
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~ 168 (382)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ...+.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 5799999999999889999999999999999999999999999999999999999999999999875432111 111236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|+|+||++.+|+.+|+.||+.++.......+.....+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~----- 160 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL----- 160 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999899999998865322223344445667889999999988999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|+++.++ | .|+|++|||++++.++||++
T Consensus 161 --~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiiivsH~~~~~~~~~d~v-------------- 214 (269)
T PRK11831 161 --EPDLIMFDEPFVGQDPITMGVLVKLISELNSALG----------VTCVVVSHDVPEVLSIADHA-------------- 214 (269)
T ss_pred --CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhhCEE--------------
Confidence 69999999999999999999999999999765 4 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++....++.+..++.
T Consensus 215 ----------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 215 ----------------YIVADKKIVAHGSAQALQANPDPRVRQFLD 244 (269)
T ss_pred ----------------EEEECCEEEEeCCHHHHhcCCcHHHHHHHH
Confidence 999999999999888876544555666664
No 35
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-53 Score=419.44 Aligned_cols=236 Identities=36% Similarity=0.593 Sum_probs=205.2
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh-hc
Q 016804 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-IS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~-~~ 165 (382)
||+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........ ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 589999999997 4689999999999999999999999999999999999999999999999999765322211 11
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+.+||||||++.+|+.+||+||+.++... .+.+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~-- 157 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLEL-AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS-- 157 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc--
Confidence 34699999999999989999999987532 234455566778899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++ | +|+|++|||++++.++|||+
T Consensus 158 -----~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tiilvtH~~~~i~~~~d~v----------- 211 (343)
T PRK11153 158 -----NPKVLLCDEATSALDPATTRSILELLKDINRELG----------LTIVLITHEMDVVKRICDRV----------- 211 (343)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.++....|...
T Consensus 212 -------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 243 (343)
T PRK11153 212 -------------------AVIDAGRLVEQGTVSEVFSHPKHPLTREFIQS 243 (343)
T ss_pred -------------------EEEECCEEEEEcCHHHHHhCCCcHHHHHHHhc
Confidence 9999999999998888753 345666666653
No 36
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-53 Score=396.85 Aligned_cols=231 Identities=38% Similarity=0.602 Sum_probs=199.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... .+.+|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV----QERNVG 77 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc----cccceE
Confidence 5899999999998899999999999999999999999999999999999999999999999998653211 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
|++|++.+|+.+||.||+.++...... ....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~---- 153 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV---- 153 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc----
Confidence 999999999889999999886432211 1233445667889999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|++++++ + +|+|++|||++++..+|||+
T Consensus 154 ---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sH~~~~~~~~~d~i------------- 207 (239)
T cd03296 154 ---EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH----------VTTVFVTHDQEEALEVADRV------------- 207 (239)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHH
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 372 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 372 (382)
++|++|++++.|+++++.. +.++.+..++
T Consensus 208 -----------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 237 (239)
T cd03296 208 -----------------VVMNKGRIEQVGTPDEVYDHPASPFVYSFL 237 (239)
T ss_pred -----------------EEEECCeEEEecCHHHHhcCCCcHHHHHHh
Confidence 9999999999998887653 3455555544
No 37
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-53 Score=416.07 Aligned_cols=239 Identities=28% Similarity=0.500 Sum_probs=208.6
Q ss_pred cceEEEEeEEEEeCC----------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCC
Q 016804 89 DVLIDCRNVYKSFGE----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~----------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~ 158 (382)
+++|+++||+++|+. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 467999999999962 5799999999999999999999999999999999999999999999999998654
Q ss_pred CChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHH
Q 016804 159 ISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKR 234 (382)
Q Consensus 159 ~~~~-~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQR 234 (382)
.... ...+.+|+||||++ .|++.+||.+++.+.+..+......+..+++.++++.+||. ...+++|++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 2221 11233699999998 58899999999987654443345556677889999999996 47899999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+|||||+. +|++||+||||++||+.++.+++++|++++++ | .|+|+||||++.+.++||||
T Consensus 163 v~iArAL~~-------~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 163 IAIARALML-------DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG----------LSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred HHHHHHHHc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 999999997 69999999999999999999999999999875 4 59999999999999999988
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|+|++.|+++++. .+.+|+++.++..
T Consensus 226 ------------------------------~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~ 257 (327)
T PRK11308 226 ------------------------------MVMYLGRCVEKGTKEQIFNNPRHPYTQALLSA 257 (327)
T ss_pred ------------------------------EEEECCEEEEECCHHHHhcCCCCHHHHHHHHh
Confidence 999999999999888876 4678999988764
No 38
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.3e-53 Score=396.46 Aligned_cols=222 Identities=36% Similarity=0.618 Sum_probs=194.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCC-HHHHHhcCEEE
Confidence 46899999999888999999999999999999999999999999999999999999999999875432 22222335999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCC---------CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKM---------RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~---------~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+||++.+|+.+||+||+.++....... ...+..+.+.++++.+|+.+..++++.+|||||||||+|||||+
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999999999998865322111 13445567889999999998899999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||++||+.++..+.+.|+++++++ +|+|++|||++++..+|||+
T Consensus 160 ~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~vsH~~~~~~~~~d~i--------- 213 (236)
T cd03219 160 T-------DPKLLLLDEPAAGLNPEETEELAELIRELRERG----------ITVLLVEHDMDVVMSLADRV--------- 213 (236)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEE---------
Confidence 7 699999999999999999999999999998765 59999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 214 ---------------------~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 214 ---------------------TVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred ---------------------EEEeCCEEEeecCHHHhc
Confidence 999999999999777764
No 39
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.2e-53 Score=418.69 Aligned_cols=224 Identities=36% Similarity=0.558 Sum_probs=199.3
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
...++|+++||+|+|+++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ... .+
T Consensus 37 ~~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~--~~~-~~ 113 (340)
T PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR--ARL-AR 113 (340)
T ss_pred CCceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc--hHH-Hh
Confidence 344689999999999999999999999999999999999999999999999999999999999999987532 111 23
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.+|||+||++.+++.+|++||+.+....+ +.+..+..+++.++++.++|.+..++++.+||||||||++|||||++
T Consensus 114 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~--- 189 (340)
T PRK13536 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN--- 189 (340)
T ss_pred ccEEEEeCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc---
Confidence 46999999999999999999998754322 23444556677889999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++.+++++|++++++| .|||++||+++++.++||||
T Consensus 190 ----~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g----------~tilisSH~l~e~~~~~d~i------------- 242 (340)
T PRK13536 190 ----DPQLLILDEPTTGLDPHARHLIWERLRSLLARG----------KTILLTTHFMEEAERLCDRL------------- 242 (340)
T ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE-------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 243 -----------------~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 243 -----------------CVLEAGRKIAEGRPHALI 260 (340)
T ss_pred -----------------EEEECCEEEEEcCHHHHH
Confidence 999999999999888764
No 40
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-52 Score=397.65 Aligned_cols=237 Identities=36% Similarity=0.531 Sum_probs=203.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC------hhhh
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS------DEEI 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~------~~~~ 164 (382)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 6999999999998889999999999999999999999999999999999999999999999998753210 0111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+.+++|+||++.+|+.+|+.||+.++..........+..+++.++++.+|+....++++.+|||||||||+|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~- 161 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM- 161 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc-
Confidence 2336999999999998899999998754322233444556678899999999988899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|+++.+++ .|+|++|||++++.++|||+
T Consensus 162 ------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~tH~~~~~~~~~d~i----------- 214 (250)
T PRK11264 162 ------RPEVILFDEPTSALDPELVGEVLNTIRQLAQEK----------RTMVIVTHEMSFARDVADRA----------- 214 (250)
T ss_pred ------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE-----------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.++....|+.+
T Consensus 215 -------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 246 (250)
T PRK11264 215 -------------------IFMDQGRIVEQGPAKALFADPQQPRTRQFLEK 246 (250)
T ss_pred -------------------EEEECCEEEEeCCHHHHhcCCCCHHHHHHHHh
Confidence 9999999999998888653 455676666544
No 41
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.8e-53 Score=391.61 Aligned_cols=205 Identities=36% Similarity=0.557 Sum_probs=179.1
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccc
Q 016804 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~ 167 (382)
||+++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ...+.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 5899999999964 46999999999999999999999999999999999999999999999999875432111 11123
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+++|+||++.+|+.+||+||+.++.... +....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~---- 155 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH---- 155 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc----
Confidence 6999999999999899999998865322 23344456678899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++++++ .|+|++|||++++..+|||+
T Consensus 156 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~vsH~~~~~~~~~d~i 208 (216)
T TIGR00960 156 ---KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRG----------TTVLVATHDINLVETYRHRT 208 (216)
T ss_pred ---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999997765 59999999999999999988
No 42
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.2e-53 Score=422.76 Aligned_cols=228 Identities=32% Similarity=0.513 Sum_probs=201.9
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--hccceEEEEecCC
Q 016804 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--ISGLRIGLVFQSA 176 (382)
Q Consensus 99 ~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~~~~~Ig~V~Q~~ 176 (382)
|+|+++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++........ ..+.+||||||++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 56888899999999999999999999999999999999999999999999999999875422211 1134699999999
Q ss_pred CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 016804 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (382)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLL 256 (382)
.+|+++||+||+.++... .+.+.++..+++.++++.+||+.+.+++|.+|||||||||+|||||+. +|+|||
T Consensus 81 ~l~~~~TV~eNi~~~~~~-~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~-------~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPEL-LGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAA-------EPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEE
Confidence 999999999999987643 345566677889999999999999999999999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCc
Q 016804 257 YDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDK 335 (382)
Q Consensus 257 LDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~ 335 (382)
|||||++||+.++..+++.|.+++++ + +|+|+||||++++.++||||
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~----------~Tii~vTHd~~ea~~~~drI---------------------- 200 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQ----------KTIVFITHDLDEAIRIGDRI---------------------- 200 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE----------------------
Confidence 99999999999999999999999765 4 59999999999999999988
Q ss_pred ccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 336 EVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 336 ~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++++..|...
T Consensus 201 --------~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~~~ 232 (363)
T TIGR01186 201 --------VIMKAGEIVQVGTPDEILRNPANEYVEEFIGK 232 (363)
T ss_pred --------EEEeCCEEEeeCCHHHHHhCcccHHHHHHhhc
Confidence 999999999999988875 4567788877654
No 43
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.3e-52 Score=395.71 Aligned_cols=235 Identities=32% Similarity=0.519 Sum_probs=201.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-----sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+++|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++..........
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 488999999999888999999999999999999999999999999999999998 999999999875321111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+|+|+||++.+|+ +|++||+.+...........+..+.+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 336999999999998 899999988653222123445566788999999998 778899999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.++|+++.++ .|+|++|||++++..+|||+
T Consensus 160 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tiiivsH~~~~~~~~~d~i-------- 213 (247)
T TIGR00972 160 AV-------EPEVLLLDEPTSALDPIATGKIEELIQELKKK-----------YTIVIVTHNMQQAARISDRT-------- 213 (247)
T ss_pred hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-----------CeEEEEecCHHHHHHhCCEE--------
Confidence 97 69999999999999999999999999999764 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.++.+.+++.+
T Consensus 214 ----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 245 (247)
T TIGR00972 214 ----------------------AFFYDGELVEYGPTEQIFTNPKEKRTEDYISG 245 (247)
T ss_pred ----------------------EEEECCEEEEeCCHHHHHhCCCChHHHHHhcc
Confidence 9999999999998888753 456677777654
No 44
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.2e-52 Score=410.51 Aligned_cols=222 Identities=35% Similarity=0.561 Sum_probs=196.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+.+|+++||+|+|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ... .+.+
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~-~~~~ 78 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR--ARL-ARVA 78 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc--HHH-Hhhc
Confidence 3579999999999988999999999999999999999999999999999999999999999999986432 111 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|||+||++.+++.+||+||+.+....+ +.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~----- 152 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN----- 152 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999998643222 23444555677889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||+|||+.++..+.++|++++++| .|||++|||++++.++|||+
T Consensus 153 --~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g----------~til~~sH~~~~~~~~~d~i--------------- 205 (303)
T TIGR01288 153 --DPQLLILDEPTTGLDPHARHLIWERLRSLLARG----------KTILLTTHFMEEAERLCDRL--------------- 205 (303)
T ss_pred --CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE---------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 206 ---------------~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 206 ---------------CVLESGRKIAEGRPHALI 223 (303)
T ss_pred ---------------EEEECCEEEEEcCHHHHH
Confidence 999999999999887764
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-52 Score=389.18 Aligned_cols=212 Identities=39% Similarity=0.655 Sum_probs=188.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--P--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--h--hhccEEE
Confidence 47899999998889999999999999999999999999999999999999999999999999875421 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|++||+.+..... +.......+++.++++.+++.+..++++.+||||||||++|||||+. +
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~-------~ 148 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAR-------E 148 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998764322 23344555678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||+|||+.++..+.++|++++++ + .|||++|||++++.++|||+
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v----------------- 201 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELG----------ITTIYVTHDQEEALALADRI----------------- 201 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhcCEE-----------------
Confidence 9999999999999999999999999999764 5 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEe
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 202 -------------~~l~~G~i~~~g 213 (213)
T cd03259 202 -------------AVMNEGRIVQVG 213 (213)
T ss_pred -------------EEEECCEEEecC
Confidence 999999998765
No 46
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.5e-52 Score=396.99 Aligned_cols=240 Identities=34% Similarity=0.548 Sum_probs=205.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC----------
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI---------- 159 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~---------- 159 (382)
.+|+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 3599999999999899999999999999999999999999999999999999999999999999864210
Q ss_pred C-hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccc-cCCCCCCChHHHHHHHH
Q 016804 160 S-DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVAL 237 (382)
Q Consensus 160 ~-~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~-~~~~~~LSGGqrQRVaI 237 (382)
. .....+.+|+|+||++.+++.+|++||+.++..........+..+++.++++.+|+.+.. ++++.+||||||||++|
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 0 111123369999999999998999999987542222234445567788999999998764 88999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++..+.++|++++++| +|+|+||||++++..+|||+
T Consensus 164 aral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivsH~~~~~~~~~d~i---- 222 (257)
T PRK10619 164 ARALAM-------EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHV---- 222 (257)
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE----
Confidence 999997 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
++|++|++++.|+++++. .+.++..++|+.|++
T Consensus 223 --------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (257)
T PRK10619 223 --------------------------IFLHQGKIEEEGAPEQLFGNPQSPRLQQFLKGSL 256 (257)
T ss_pred --------------------------EEEECCEEEEeCCHHHhhhCccCHHHHHHhhccC
Confidence 999999999999887765 345577788887765
No 47
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-52 Score=390.51 Aligned_cols=217 Identities=35% Similarity=0.597 Sum_probs=192.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . .. .+.+++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~-~~-~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-P-RE-VRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-h-HH-HhhcEEE
Confidence 5789999999988999999999999999999999999999999999999999999999999886431 1 12 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+++.+||++|+.+..... +....+..+++.++++.++|.+..++++.+||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~-------~ 149 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLY-GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH-------R 149 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998865322 23444556678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||++||+.++..+.+.|+++.++ + .|+|++|||++++..+|||+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~~tH~~~~~~~~~d~i----------------- 202 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG----------MTILLTTHYMEEAEQLCDRV----------------- 202 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------------
Confidence 9999999999999999999999999999876 5 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|++|++++.|++++
T Consensus 203 -------------~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 203 -------------AIIDHGRIIAEGTPEE 218 (220)
T ss_pred -------------EEEeCCEEEEeCChHH
Confidence 9999999999886554
No 48
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-52 Score=392.82 Aligned_cols=223 Identities=38% Similarity=0.611 Sum_probs=195.1
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhc
Q 016804 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~ 165 (382)
||+++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 58999999999876 8999999999999999999999999999999999999999999999999875432111 111
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+.+|+|+||++.+|+.+|++||+.+..... +.......+.+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-- 157 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN-- 157 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc--
Confidence 336999999999999899999998865322 23444456678899999999998999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.+.|+++.++ + +|+|++||+++++.++||++
T Consensus 158 -----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sH~~~~~~~~~d~i----------- 211 (233)
T cd03258 158 -----NPKVLLCDEATSALDPETTQSILALLRDINRELG----------LTIVLITHEMEVVKRICDRV----------- 211 (233)
T ss_pred -----CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999775 5 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 212 -------------------~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 212 -------------------AVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred -------------------EEEECCEEEEecCHHHHh
Confidence 999999999999776654
No 49
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-52 Score=412.62 Aligned_cols=236 Identities=26% Similarity=0.451 Sum_probs=205.0
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEECCCCCChh
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~----p~sG~I~i~G~~i~~~~~~~ 162 (382)
+|+++||++.|+. .++|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999976 479999999999999999999999999999999999998 48999999999986543222
Q ss_pred hh--ccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCCChHHHHHH
Q 016804 163 EI--SGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKRV 235 (382)
Q Consensus 163 ~~--~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSGGqrQRV 235 (382)
.. .+.+|+||||++ .+++.+|+.+++...+..+.+...++..+++.++++.+||.+ ..+++|++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 11 223599999998 578899999998776544333455566778899999999963 57899999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
+|||||+. +|+|||+||||++||+.++.+++++|++++++ | .|+|+||||++.+.++||||
T Consensus 163 ~iArAL~~-------~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g----------~til~iTHdl~~~~~~adri- 224 (326)
T PRK11022 163 MIAMAIAC-------RPKLLIADEPTTALDVTIQAQIIELLLELQQKEN----------MALVLITHDLALVAEAAHKI- 224 (326)
T ss_pred HHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-
Confidence 99999997 69999999999999999999999999999875 4 59999999999999999988
Q ss_pred cccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 315 LFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|++.++. .+.+|+++.++.
T Consensus 225 -----------------------------~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 225 -----------------------------IVMYAGQVVETGKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred -----------------------------EEEECCEEEEECCHHHHhhCCCChHHHHHHH
Confidence 999999999999888876 567899988765
No 50
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.6e-52 Score=390.86 Aligned_cols=221 Identities=32% Similarity=0.594 Sum_probs=194.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP-MHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCC-HhHHHhccEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999865432 11222235999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|++||+.+..... .....+..+++.++++.+++.+..++.+.+||||||||++|||||+. +
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-------~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIR-GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT-------N 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998864322 23344455677899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|+++.+++ .|+|++|||++++.++|||+
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i------------------ 203 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG----------IGVLITDHNVRETLSITDRA------------------ 203 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE------------------
Confidence 99999999999999999999999999998765 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+.+++.
T Consensus 204 ------------~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 204 ------------YIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred ------------EEEECCeEEEEeCHHHhh
Confidence 999999999999777764
No 51
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.7e-52 Score=412.38 Aligned_cols=238 Identities=26% Similarity=0.472 Sum_probs=207.3
Q ss_pred cceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCCCh
Q 016804 89 DVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISD 161 (382)
Q Consensus 89 ~~~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~~~ 161 (382)
+++|+++||+++|+ ...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|+++|+++..+...
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 46899999999994 357999999999999999999999999999999999999996 99999999998764322
Q ss_pred hh--hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCCChHHHHH
Q 016804 162 EE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKR 234 (382)
Q Consensus 162 ~~--~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSGGqrQR 234 (382)
.. .++.+|+||||++ .+++.+|+.+|+.+....+.+....+..+++.++++.+||.+ ..+++|++||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 21 1223699999998 688999999999876544433455666678899999999964 4578999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+|||||+. +|++||+||||++||+.++..++++|++++++ + .|+|+||||++.+.++|||+
T Consensus 170 v~IArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 170 VMIAMALLC-------RPKLLIADEPTTALDVTVQAQIMTLLNELKREFN----------TAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred HHHHHHHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHHHhCCEE
Confidence 999999997 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+|+++.++.
T Consensus 233 ------------------------------~vm~~G~ive~g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 233 ------------------------------LVMYAGRTMEYGNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred ------------------------------EEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 999999999999988875 578999998875
No 52
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.7e-52 Score=399.11 Aligned_cols=236 Identities=30% Similarity=0.522 Sum_probs=203.4
Q ss_pred eEEEEeEEEEeC---------CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh
Q 016804 91 LIDCRNVYKSFG---------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 91 ~I~~~nvs~~yg---------~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
+|+++||+|+|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 689999999995 36799999999999999999999999999999999999999999999999987543221
Q ss_pred h-hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHH
Q 016804 162 E-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 162 ~-~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaI 237 (382)
. ...+.+|+|+||++ .+++.+|++||+.+...........+..+++.++++.+|+. ...++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 1 11123699999997 46777899999987653222234444556788999999996 67899999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
||||+. +|++|||||||++||+.++..+.+.|+++.++ + .|||++|||++.+..+||++
T Consensus 162 aral~~-------~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiiivsH~~~~~~~~~d~i--- 221 (265)
T TIGR02769 162 ARALAV-------KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG----------TAYLFITHDLRLVQSFCQRV--- 221 (265)
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHHhcEE---
Confidence 999997 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|++.++....+|+++++..
T Consensus 222 ---------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 251 (265)
T TIGR02769 222 ---------------------------AVMDKGQIVEECDVAQLLSFKHPAGRNLQS 251 (265)
T ss_pred ---------------------------EEEeCCEEEEECCHHHHcCCCCHHHHHHHH
Confidence 999999999999988887778899988873
No 53
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-52 Score=392.31 Aligned_cols=235 Identities=31% Similarity=0.501 Sum_probs=200.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC--C--hhhhcc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI--S--DEEISG 166 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~--~--~~~~~~ 166 (382)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... . .....+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 689999999999889999999999999999999999999999999999999999999999999863110 1 111112
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.+|+|+||++.+|+.+|+.||+.+......+....+..+++.++++.+|+.++.++++.+||||||||++|||||+.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--- 158 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM--- 158 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc---
Confidence 36999999999999999999997533222223344455678899999999988999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|+++.+++ +|+|++|||++++.++|||+
T Consensus 159 ----~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~~~~d~i------------- 211 (242)
T PRK11124 159 ----EPQVLLFDEPTAALDPEITAQIVSIIRELAETG----------ITQVIVTHEVEVARKTASRV------------- 211 (242)
T ss_pred ----CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEE-------------
Confidence 599999999999999999999999999997665 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|++++.|+++++..+.++...+++
T Consensus 212 -----------------~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 240 (242)
T PRK11124 212 -----------------VYMENGHIVEQGDASCFTQPQTEAFKNYL 240 (242)
T ss_pred -----------------EEEECCEEEEeCCHHHhcCcccHHHHHhh
Confidence 99999999999987777655555555544
No 54
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.5e-52 Score=390.09 Aligned_cols=219 Identities=38% Similarity=0.593 Sum_probs=188.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEECCEECCCCCChhhhcc
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-----~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++..........+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999999889999999999999999999999999999999999999 9999999999998754321011123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC--CCCCChHHHHHHHHHHHHhcC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL--PSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~--~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+|+|+||++.+| .+||+||+.+...........+..+++.++++.+|+.+..++. +.+||||||||++|||||+.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~- 158 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN- 158 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc-
Confidence 3699999999988 6899999988653221112223456788999999998877766 59999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++ .|+|++|||++++..+|||+
T Consensus 159 ------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sH~~~~~~~~~d~i----------- 210 (227)
T cd03260 159 ------EPEVLLLDEPTSALDPISTAKIEELIAELKKE-----------YTIVIVTHNMQQAARVADRT----------- 210 (227)
T ss_pred ------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-----------cEEEEEeccHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999765 39999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|++|++++.|++++
T Consensus 211 -------------------~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 -------------------AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred -------------------EEEeCCEEEEecCccc
Confidence 9999999999997654
No 55
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-52 Score=406.27 Aligned_cols=238 Identities=31% Similarity=0.563 Sum_probs=211.2
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-C----CccEEEECCEECCCCCCh
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-P----DKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-p----~sG~I~i~G~~i~~~~~~ 161 (382)
+|+++||+.+|.. .++++||||+|++||++||||.|||||||+.+.|+|+++ | .+|+|.|+|+++..+..+
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 3789999999953 479999999999999999999999999999999999998 4 579999999998776443
Q ss_pred h--hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCC-CHHHHHHHHHHHHHHcCCcc---cccCCCCCCChHHHH
Q 016804 162 E--EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKK 233 (382)
Q Consensus 162 ~--~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSGGqrQ 233 (382)
. ..+...|+||||+| .|.|.+||.+.+...+..+... .+++..+++.++|+.+|+.+ ..+.||++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2 23445799999997 5899999999998887655544 46677888999999999974 679999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
||.||.||+. +|++||.||||++||...+.+++++|++++++.+ +|+|+||||+..+.++||||
T Consensus 161 RV~IAmala~-------~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~---------~aiilITHDl~vva~~aDri 224 (316)
T COG0444 161 RVMIAMALAL-------NPKLLIADEPTTALDVTVQAQILDLLKELQREKG---------TALILITHDLGVVAEIADRV 224 (316)
T ss_pred HHHHHHHHhC-------CCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcC---------CEEEEEeCCHHHHHHhcceE
Confidence 9999999996 6999999999999999999999999999988532 69999999999999999988
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+||+.|+||+.|++++++ ++.|||++.+++.
T Consensus 225 ------------------------------~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 225 ------------------------------AVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred ------------------------------EEEECcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 999999999999998865 6899999998874
No 56
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-52 Score=420.95 Aligned_cols=236 Identities=34% Similarity=0.568 Sum_probs=203.9
Q ss_pred eEEEEeEEEEeCCee------------------------eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 016804 91 LIDCRNVYKSFGEKH------------------------ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~------------------------iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG 146 (382)
+|+++||+|.||..+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 577777777776543 89999999999999999999999999999999999999999
Q ss_pred EEEECCEECCCCCChh--hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC
Q 016804 147 EVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224 (382)
Q Consensus 147 ~I~i~G~~i~~~~~~~--~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~ 224 (382)
+|+++|+++....... ...+.++||+||++.+|+++||+||+.++... .+...++..+++.++++.+||.++.+++|
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~-~~~~~~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMEL-AGINAEERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence 9999999976532211 11233699999999999999999999987532 23444555677889999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCH
Q 016804 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl 303 (382)
.+|||||||||+|||||+. +|++|||||||++||+.++..+++.|++++++ + +|||++|||+
T Consensus 163 ~~LSgGq~QRv~LArAL~~-------~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g----------~TIIivTHd~ 225 (400)
T PRK10070 163 DELSGGMRQRVGLARALAI-------NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ----------RTIVFISHDL 225 (400)
T ss_pred ccCCHHHHHHHHHHHHHhc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC----------CeEEEEECCH
Confidence 9999999999999999997 69999999999999999999999999999764 4 5999999999
Q ss_pred HHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 304 STIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 304 ~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+++.++|||+ ++|++|++++.|+++++. .+.++++..|+.+
T Consensus 226 ~~~~~~~Dri------------------------------~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~~ 267 (400)
T PRK10070 226 DEAMRIGDRI------------------------------AIMQNGEVVQVGTPDEILNNPANDYVRTFFRG 267 (400)
T ss_pred HHHHHhCCEE------------------------------EEEECCEEEecCCHHHHHhCcccHHHHHHHhc
Confidence 9999999988 999999999999888875 4567788888765
No 57
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=4.3e-52 Score=421.56 Aligned_cols=224 Identities=30% Similarity=0.486 Sum_probs=198.9
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .... +++|
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~-~~~~-~~~i 79 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS-ARAA-SRRV 79 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCC-HHHH-hcce
Confidence 4799999999999999999999999999999999999999999999999999999999999999876532 2222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcC-CCC--HHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENS-KMR--DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~-~~~--~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
|||+|++.+++.+||+||+.++...+. ... ..+..+++.++++.+|+.++.++++.+|||||||||+|||||++
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~--- 156 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ--- 156 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc---
Confidence 999999999888999999988653221 111 23446678999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++.+++++|+++++++ .|||++|||++++.++|||+
T Consensus 157 ----~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g----------~TIIivsHdl~~~~~~adri------------- 209 (402)
T PRK09536 157 ----ATPVLLLDEPTASLDINHQVRTLELVRRLVDDG----------KTAVAAIHDLDLAARYCDEL------------- 209 (402)
T ss_pred ----CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEE-------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 210 -----------------i~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 210 -----------------VLLADGRVRAAGPPADVLT 228 (402)
T ss_pred -----------------EEEECCEEEEecCHHHHhC
Confidence 9999999999999888764
No 58
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5.2e-52 Score=384.08 Aligned_cols=212 Identities=36% Similarity=0.602 Sum_probs=189.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+.+++|
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~---~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-P---KDRDIAM 76 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-c---ccceEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999875321 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+..|++||+.++.... ....++..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~-------~ 148 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR-------E 148 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998864322 23445556778899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||+|||+.++..+.++|++++++ + .|+|++|||++++.++||++
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~~sH~~~~~~~~~d~i----------------- 201 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG----------TTTIYVTHDQVEAMTMADRI----------------- 201 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeE-----------------
Confidence 9999999999999999999999999999865 5 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEe
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 202 -------------~~l~~g~~~~~g 213 (213)
T cd03301 202 -------------AVMNDGQIQQIG 213 (213)
T ss_pred -------------EEEECCEEEecC
Confidence 999999998865
No 59
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-52 Score=403.19 Aligned_cols=222 Identities=35% Similarity=0.588 Sum_probs=193.5
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 46999999999999999999999999999999999999999999999999875421111112
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc--ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~--~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+||||||++ .+|+ .||+||+.++... .+..+++..+++.++++.+||. ++.++++.+||||||||++|||||
T Consensus 82 ~~~ig~v~q~~~~~~~~-~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFE-ETIEKDIAFGPIN-LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred hhceEEEecCchhcccc-ccHHHHHHhHHHH-CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 34699999997 3454 7999999986532 2355666777889999999997 678999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||+|||+.++.++.++|++++++ | .|||++|||++++.++||||
T Consensus 160 ~~-------~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~drv------- 215 (287)
T PRK13637 160 AM-------EPKILILDEPTAGLDPKGRDEILNKIKELHKEYN----------MTIILVSHSMEDVAKLADRI------- 215 (287)
T ss_pred Hc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-------
Confidence 97 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 -----------------------~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 216 -----------------------IVMNKGKCELQGTPREVF 233 (287)
T ss_pred -----------------------EEEECCEEEEECCHHHHH
Confidence 999999999999888764
No 60
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-53 Score=389.32 Aligned_cols=220 Identities=32% Similarity=0.575 Sum_probs=202.1
Q ss_pred eEEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~-iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
||++.+++|+|+..+ +++||||++++||++||+|||||||||+||+|++|+.|++|.|+++|.|.... ....+++|
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~---p~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD---PSFVRRKI 77 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC---hHHHhhhc
Confidence 689999999999866 99999999999999999999999999999999999999999999999986542 12234479
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|.+|.+..+|..||++|||.|....+ ++...+++.+++++.+.++|.+.++++..+||.||||||+|||||++
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~-~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh------ 150 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLN-GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVH------ 150 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhc------
Confidence 99998888999999999999876543 47778889999999999999999999999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++++|||||+|||..+++.+.+.|++++.+| +++|++||+|++++.+||||
T Consensus 151 -~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg----------r~viFSSH~m~EvealCDrv---------------- 203 (245)
T COG4555 151 -DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG----------RAVIFSSHIMQEVEALCDRV---------------- 203 (245)
T ss_pred -CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC----------cEEEEecccHHHHHHhhheE----------------
Confidence 599999999999999999999999999998887 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+++..|+.+++.
T Consensus 204 --------------ivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 204 --------------IVLHKGEVVLEGSIEALD 221 (245)
T ss_pred --------------EEEecCcEEEcCCHHHHH
Confidence 999999999999988764
No 61
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.6e-52 Score=386.45 Aligned_cols=214 Identities=34% Similarity=0.631 Sum_probs=189.7
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 91 ~I~~~nvs~~yg~~----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
||+++||+++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .... +
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~-~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE--PAEA-R 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC--HHHH-H
Confidence 48899999999876 799999999999999999999999999999999999999999999999987531 2222 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.+++|+||++.+|+.+||+||+.+....+ +....+..+++.++++.+|+.+..++.+.+||||||||++|||||+.
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--- 153 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH--- 153 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc---
Confidence 36999999999999899999998754322 23445556778899999999998999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+.++..+.++|+++.+++ .|+|++|||++++..+|||+
T Consensus 154 ----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~i------------- 206 (218)
T cd03266 154 ----DPPVLLLDEPTTGLDVMATRALREFIRQLRALG----------KCILFSTHIMQEVERLCDRV------------- 206 (218)
T ss_pred ----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhcCEE-------------
Confidence 699999999999999999999999999997665 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 207 -----------------~~l~~G~i~~~~ 218 (218)
T cd03266 207 -----------------VVLHRGRVVYEG 218 (218)
T ss_pred -----------------EEEECCEEeecC
Confidence 999999998754
No 62
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.6e-52 Score=387.00 Aligned_cols=219 Identities=31% Similarity=0.527 Sum_probs=189.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..... ....+.+|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP-HERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCH-HHHHhcCeEE
Confidence 578999999998899999999999999999999999999999999999999999999999998754322 1222336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHc-CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~-gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
+||++.+|+.+|++||+.+...... ..+..+.+.++++.+ ++.+..++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 149 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS------- 149 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999999999988653221 223345567788888 57888899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|++|||||||+|||+.++..+.++|+++++++ .|+|++|||++++.++||++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i----------------- 202 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG----------VTILLVEQNARFALEIADRA----------------- 202 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhccEE-----------------
Confidence 699999999999999999999999999997765 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 203 -------------~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 203 -------------YVLERGRVVLEGTAAELL 220 (222)
T ss_pred -------------EEeeCCeEEEeCCHHHHh
Confidence 999999999998766543
No 63
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-52 Score=391.02 Aligned_cols=223 Identities=35% Similarity=0.550 Sum_probs=191.7
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh-hhhccceE
Q 016804 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD-EEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~-~~~~~~~I 169 (382)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....+.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 7899999999999999999999999999999999999999999999999987543210 11122369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhc-------CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+|+||++.+|+.+||+||+.++.... .+.......+++.++++.+++.+..++++.+|||||||||+|||||+
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999899999998754210 01112334566788999999998899999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
. +|++|||||||+|||+.++..+.+.|+++.++ | .|||++|||++++..+||++
T Consensus 161 ~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~tH~~~~~~~~~d~v-------- 215 (241)
T cd03256 161 Q-------QPKLILADEPVASLDPASSRQVMDLLKRINREEG----------ITVIVSLHQVDLAREYADRI-------- 215 (241)
T ss_pred c-------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE--------
Confidence 7 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 ----------------------~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 216 ----------------------VGLKDGRIVFDGPPAELT 233 (241)
T ss_pred ----------------------EEEECCEEEeecCHHHhh
Confidence 999999999999777753
No 64
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-53 Score=383.95 Aligned_cols=237 Identities=34% Similarity=0.536 Sum_probs=213.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--------
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD-------- 161 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~-------- 161 (382)
+.|+++|+.|+||...+|++|||+-++|+++.|||.|||||||+||||+=|..|+.|+|.++|+.+.-....
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 458999999999999999999999999999999999999999999999999999999999999986421110
Q ss_pred -hh--hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH
Q 016804 162 -EE--ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 162 -~~--~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA 238 (382)
.. +.+.+.|+|||+.+|+.+|||.||+.......-+.++.+..++++.+|.++|+.+..+.||..||||||||++||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 11 112359999999999999999999977543334567888889999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+ ++|+++|+|||||+|||+..-++++.|++|+++| +|+++|||.|.++++.+.+|
T Consensus 165 RaLa-------meP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg----------rTMv~VTHEM~FAR~Vss~v----- 222 (256)
T COG4598 165 RALA-------MEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG----------RTMVVVTHEMGFARDVSSHV----- 222 (256)
T ss_pred HHHh-------cCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC----------CeEEEEeeehhHHHhhhhhe-----
Confidence 9997 5899999999999999999999999999999998 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|.++|+|++++ ++..+.+++|++
T Consensus 223 -------------------------~fLh~G~iEE~G~P~qvf~nP~S~RlkqFls 253 (256)
T COG4598 223 -------------------------IFLHQGKIEEEGPPEQVFGNPQSPRLKQFLS 253 (256)
T ss_pred -------------------------EEeecceecccCChHHHhcCCCCHHHHHHHH
Confidence 999999999999999976 678899999987
No 65
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.8e-52 Score=393.17 Aligned_cols=223 Identities=34% Similarity=0.536 Sum_probs=192.2
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccce
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~ 168 (382)
||+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 588999999998 778999999999999999999999999999999999999999999999999875432111 111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhc-------CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
++|+||++.+|+.+||+||+.++.... ......+..+++.++++.+|+.+..++++.+|||||||||+|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999899999998753211 0111233456788899999999889999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||+|||+.++..+.++|+++.++ + +|+|++|||++++.++||++
T Consensus 161 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~tH~~~~~~~~~d~v------- 216 (243)
T TIGR02315 161 AQ-------QPDLILADEPIASLDPKTSKQVMDYLKRINKEDG----------ITVIINLHQVDLAKKYADRI------- 216 (243)
T ss_pred hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeE-------
Confidence 97 69999999999999999999999999999765 4 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+++++
T Consensus 217 -----------------------~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 217 -----------------------VGLKAGEIVFDGAPSEL 233 (243)
T ss_pred -----------------------EEEECCEEEecCCHHHh
Confidence 99999999999987775
No 66
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-52 Score=409.10 Aligned_cols=238 Identities=24% Similarity=0.365 Sum_probs=201.6
Q ss_pred ceEEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEECCCCCCh
Q 016804 90 VLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA----PDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 90 ~~I~~~nvs~~y----g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~----p~sG~I~i~G~~i~~~~~~ 161 (382)
++|+++||+++| +...+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|+++|+++......
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 369999999999 44679999999999999999999999999999999999997 5899999999998654322
Q ss_pred hh--hccceEEEEecCCC--CCCCCCHHHHHHhhHhhc--CC---CCHHHHHHHHHHHHHHcCCcc---cccCCCCCCCh
Q 016804 162 EE--ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYEN--SK---MRDEQISELVKENLAAVGLKG---VEDRLPSELSG 229 (382)
Q Consensus 162 ~~--~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~--~~---~~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSG 229 (382)
.. ..+.+|+||||++. +++.+||.+|+.+....+ .+ ....+..+++.++|+.+||.+ ..+++|.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 21 12236999999985 678899999997643211 11 112344567889999999974 46899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
||||||+|||||+. +|+||||||||++||+.++.++.++|+++.++ | .|+|+||||++.+.+
T Consensus 162 G~~QRv~iArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~tii~itHdl~~v~~ 224 (330)
T PRK15093 162 GECQKVMIAIALAN-------QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNN----------TTILLISHDLQMLSQ 224 (330)
T ss_pred HHHHHHHHHHHHHC-------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHH
Confidence 99999999999997 69999999999999999999999999999875 4 599999999999999
Q ss_pred hhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 309 AVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 309 ~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+|||| ++|++|+|++.|++.++. .+.+++++.++..
T Consensus 225 ~~dri------------------------------~vm~~G~ive~g~~~~i~~~p~~~y~~~ll~~ 261 (330)
T PRK15093 225 WADKI------------------------------NVLYCGQTVETAPSKELVTTPHHPYTQALIRA 261 (330)
T ss_pred hCCEE------------------------------EEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99988 999999999999888875 5678998887764
No 67
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-51 Score=389.71 Aligned_cols=232 Identities=36% Similarity=0.598 Sum_probs=200.1
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ... +.+++
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~-~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP-VEL-RRKIG 78 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh-HHh-hcceE
Confidence 478999999987 789999999999999999999999999999999999999999999999998754322 122 33699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc--cccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~--~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|+||++.+|+.+|++||+.++... .+....+..+++.++++.+++.. +.++++.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~----- 152 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKL-LKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA----- 152 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999889999999876432 22344455667889999999985 7899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.+.|++++++ | .|+|++||+++++..+|||+
T Consensus 153 --~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tvii~sH~~~~~~~~~d~i-------------- 206 (242)
T cd03295 153 --DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG----------KTIVFVTHDIDEAFRLADRI-------------- 206 (242)
T ss_pred --CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999865 5 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. ..++....+..
T Consensus 207 ----------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (242)
T cd03295 207 ----------------AIMKNGEIVQVGTPDEILRSPANDFVAEFVG 237 (242)
T ss_pred ----------------EEEECCEEEEecCHHHHHcCCCChHHHHHhC
Confidence 9999999999998777643 34566666654
No 68
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.1e-51 Score=392.06 Aligned_cols=236 Identities=35% Similarity=0.526 Sum_probs=202.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC-------C--h-
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI-------S--D- 161 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~-------~--~- 161 (382)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..+. . .
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 47899999999889999999999999999999999999999999999999999999999999875321 0 0
Q ss_pred -hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHH
Q 016804 162 -EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 162 -~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArA 240 (382)
....+.+++|+||++.+|+.+|+.||+.++.....+....+..+.+.++++.+|+.+..++.+.+||||||||++||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 0112336999999999998899999998753222223444556678899999999988999999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
|+. +|++|||||||+|||+.++..+.++|+++.++ + .|+|++|||++++.++|||+
T Consensus 161 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiiivsH~~~~~~~~~d~i------ 217 (252)
T TIGR03005 161 LAM-------RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHD----------LTMLLVTHEMGFAREFADRV------ 217 (252)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHhcCEE------
Confidence 997 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+.+++. .+.++.+..++.+
T Consensus 218 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 249 (252)
T TIGR03005 218 ------------------------CFFDKGRIVEQGKPDEIFRQPKEERTREFLSK 249 (252)
T ss_pred ------------------------EEEECCEEEEeCCHHHHhcCCCcHHHHHHHhh
Confidence 999999999999887765 3456777777653
No 69
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-51 Score=391.98 Aligned_cols=237 Identities=28% Similarity=0.461 Sum_probs=201.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++........
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 3579999999999888899999999999999999999999999999999999997 58999999998642111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCC----cccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL----KGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL----~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|+|+||++.+|+ +||+||+.++.............+++.++++.+++ .+..++++.+|||||||||+|||
T Consensus 85 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 12336999999999885 89999998865322212334456678889999987 35678899999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..++++|+++++ + .|+|++||+++++.++|||+
T Consensus 164 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tvii~sH~~~~~~~~~d~i------ 219 (254)
T PRK14273 164 TLAI-------EPNVILMDEPTSALDPISTGKIEELIINLKE-S----------YTIIIVTHNMQQAGRISDRT------ 219 (254)
T ss_pred HHHc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.++.+..++.+
T Consensus 220 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 251 (254)
T PRK14273 220 ------------------------AFFLNGCIEEESSTDELFFNPKNTKTEEYISG 251 (254)
T ss_pred ------------------------EEEECCEEEEeCCHHHHHhCCCChHHHHhhcc
Confidence 999999999999888875 5678888887764
No 70
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-51 Score=384.02 Aligned_cols=211 Identities=39% Similarity=0.625 Sum_probs=187.7
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 92 I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-------~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP-------GP 73 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-------cC
Confidence 478999999987 7899999999999999999999999999999999999999999999999986421 23
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+++|+||++.+|+.+|++||+.+..... +.......+.+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~---- 148 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV---- 148 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc----
Confidence 6999999999998899999998865322 23344455678899999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++||+++++..+||++
T Consensus 149 ---~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i------------- 202 (220)
T cd03293 149 ---DPDVLLLDEPFSALDALTREQLQEELLDIWRETG----------KTVLLVTHDIDEAVFLADRV------------- 202 (220)
T ss_pred ---CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999654 4 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEe--CCeEEEEecc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLY--EGKIVWQGMT 357 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~--~G~i~~~g~~ 357 (382)
++|+ +|+++++++.
T Consensus 203 -----------------~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 203 -----------------VVLSARPGRIVAEVEV 218 (220)
T ss_pred -----------------EEEECCCCEEEEEEEe
Confidence 9999 7999988753
No 71
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.9e-51 Score=387.60 Aligned_cols=224 Identities=29% Similarity=0.481 Sum_probs=195.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.++
T Consensus 1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP-EHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCC-HHHHHhcCe
Confidence 3689999999998888999999999999999999999999999999999999999999999999875432 221223369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcC-------CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+|+||++.+|+.+||+||+.+...... ....++..+++.++++.+|+.+..++.+.+|||||||||+|||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999999999999999988542111 0122344567889999999998889999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++.++|||+
T Consensus 160 ~-------~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sH~~~~~~~~~d~i--------- 212 (242)
T TIGR03411 160 Q-------DPKLLLLDEPVAGMTDEETEKTAELLKSLAG-K----------HSVVVVEHDMEFVRSIADKV--------- 212 (242)
T ss_pred c-------CCCEEEecCCccCCCHHHHHHHHHHHHHHhc-C----------CEEEEEECCHHHHHHhCCEE---------
Confidence 7 6999999999999999999999999999976 4 49999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|++.++..
T Consensus 213 ---------------------~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 213 ---------------------TVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred ---------------------EEEECCeEEeeCCHHHHhc
Confidence 9999999999998777753
No 72
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.4e-52 Score=384.73 Aligned_cols=203 Identities=41% Similarity=0.631 Sum_probs=176.4
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--hhc
Q 016804 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EIS 165 (382)
Q Consensus 92 I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~~~ 165 (382)
|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999986 78999999999999999999999999999999999999999999999999875432111 112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+.+++|+||++.+|+.+||+||+.++.... +....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-- 157 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN-- 157 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc--
Confidence 236999999999999899999999865322 23334445678899999999988899999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++.++ + +|+|++|||++++. +||++
T Consensus 158 -----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~-~~d~v 210 (218)
T cd03255 158 -----DPKIILADEPTGNLDSETGKEVMELLRELNKEAG----------TTIVVVTHDPELAE-YADRI 210 (218)
T ss_pred -----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEECCHHHHh-hhcEE
Confidence 69999999999999999999999999999873 5 59999999999987 88887
No 73
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=8.8e-52 Score=382.11 Aligned_cols=205 Identities=40% Similarity=0.635 Sum_probs=178.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........+.+|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 47899999999889999999999999999999999999999999999999999999999999864211111112336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|++||+.++.....+...++..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 153 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM-------N 153 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998864222233444556678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||+|||+.++..+.++|+++++++ .|+|++||+++++.++||++
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~sh~~~~~~~~~d~i 205 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEG----------MTMVVVTHEMGFAREVADRV 205 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999999999999998765 59999999999999999988
No 74
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7.7e-52 Score=384.73 Aligned_cols=217 Identities=35% Similarity=0.552 Sum_probs=190.8
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .+.++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~-~~~~i 77 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD--RKA-ARQSL 77 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc--hHH-HhhhE
Confidence 578999999987 7899999999999999999999999999999999999999999999999987532 112 22369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+++.+|+++|+.+..... +....+..+++.++++.++|.+..++++.+||||||||++|||||+.
T Consensus 78 ~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------ 150 (220)
T cd03263 78 GYCPQFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG------ 150 (220)
T ss_pred EEecCcCCccccCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc------
Confidence 99999999998899999998865322 23444455678899999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+.++..+.+.|++++++ .|+|++||+++.+.++||++
T Consensus 151 -~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sH~~~~~~~~~d~i---------------- 202 (220)
T cd03263 151 -GPSVLLLDEPTSGLDPASRRAIWDLILEVRKG-----------RSIILTTHSMDEAEALCDRI---------------- 202 (220)
T ss_pred -CCCEEEECCCCCCCCHHHHHHHHHHHHHHhcC-----------CEEEEEcCCHHHHHHhcCEE----------------
Confidence 69999999999999999999999999999753 49999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+++++
T Consensus 203 --------------~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 203 --------------AIMSDGKLRCIGSPQEL 219 (220)
T ss_pred --------------EEEECCEEEecCCHHHc
Confidence 99999999999876553
No 75
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-51 Score=389.58 Aligned_cols=224 Identities=25% Similarity=0.482 Sum_probs=196.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... .....+.+|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP-LHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHHHHhCeE
Confidence 699999999999889999999999999999999999999999999999999999999999999875432 2122233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+|+.||+.+..........++..+++.++++.+|+.+..++.+.+|||||||||+|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA------- 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998754222123344455678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|++|||||||++||+.++..+.++|++++++| .|+|++||+++++.++||++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~sH~~~~~~~~~d~v----------------- 207 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSG----------LGVLITDHNVRETLAVCERA----------------- 207 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEEcCHHHHHHhcCEE-----------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 208 -------------~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 208 -------------YIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred -------------EEEeCCeEEeeCCHHHHhc
Confidence 9999999999998877753
No 76
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-51 Score=389.36 Aligned_cols=236 Identities=29% Similarity=0.459 Sum_probs=197.7
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.|+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++........
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 468999999999998889999999999999999999999999999999999974 689999999998753111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|+|+||++.+|+ .||+||+.++.........+...+++.++++.+++.+ ..++.+.+|||||||||+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 12336999999999998 5999999886532221233445667888999999853 468889999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++.++|||+
T Consensus 163 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tvii~tH~~~~~~~~~d~v------ 218 (253)
T PRK14242 163 ALAV-------EPEVLLMDEPASALDPIATQKIEELIHELKA-R----------YTIIIVTHNMQQAARVSDVT------ 218 (253)
T ss_pred HHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CeEEEEEecHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999954 4 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. +.+..+.+++.
T Consensus 219 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 249 (253)
T PRK14242 219 ------------------------AFFYMGKLIEVGPTEQIFTRPREKQTEDYIT 249 (253)
T ss_pred ------------------------EEEECCEEEEeCCHHHHHcCCCchHHHHHhh
Confidence 9999999999998888653 44566666654
No 77
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-51 Score=385.42 Aligned_cols=218 Identities=34% Similarity=0.599 Sum_probs=188.8
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-- 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~-- 163 (382)
++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 57999999999974 579999999999999999999999999999999999999999999999998765322211
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
..+.+|+|+||++.+|+.+|++||+.+.... .....++..+++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLI-GKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1123699999999999989999999886432 123344556678899999999988899999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+|++|||||||+|||+.++..+.++|++++++ | +|+|++|||++++..+ |++
T Consensus 163 -------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tvii~sH~~~~~~~~-~~~--------- 215 (233)
T PRK11629 163 -------NPRLVLADEPTGNLDARNADSIFQLLGELNRLQG----------TAFLVVTHDLQLAKRM-SRQ--------- 215 (233)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHhh-CEE---------
Confidence 69999999999999999999999999999764 5 5999999999998865 566
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
++|++|+|++.+.
T Consensus 216 ---------------------~~l~~G~i~~~~~ 228 (233)
T PRK11629 216 ---------------------LEMRDGRLTAELS 228 (233)
T ss_pred ---------------------EEEECCEEEEEec
Confidence 8999999998774
No 78
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-51 Score=390.77 Aligned_cols=236 Identities=28% Similarity=0.456 Sum_probs=201.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++|++++|+++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++........
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 4679999999999988899999999999999999999999999999999999985 89999999998643211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+..++|+||++.+|+ +|++||+.+..... +.+.++..+++.++++.+++. +..++++.+|||||||||+|||
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHH
Confidence 12336999999999998 89999998865322 234444556688899999983 4578899999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++.+ + +|+|++|||++++.++|||+
T Consensus 168 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~----------~tiiivsH~~~~~~~~~d~i------ 223 (258)
T PRK14268 168 TLAV-------KPKIILFDEPTSALDPISTARIEDLIMNLKK-D----------YTIVIVTHNMQQAARISDYT------ 223 (258)
T ss_pred HHHc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-C----------CEEEEEECCHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.++++..+
T Consensus 224 ------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK14268 224 ------------------------GFFLMGELIEFGQTRQIFHNPREKSTEDYITG 255 (258)
T ss_pred ------------------------EEEECCEEEEeCCHHHHhcCCCCHHHHHHhhc
Confidence 999999999999888875 4566778877654
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-51 Score=397.68 Aligned_cols=221 Identities=30% Similarity=0.515 Sum_probs=193.0
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..... +.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~-~~~ 80 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE-NEKWV-RSK 80 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC-CHHHH-Hhh
Confidence 3799999999996 56799999999999999999999999999999999999999999999999987542 22222 236
Q ss_pred EEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 169 IGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 169 Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
|||+||++. .+...||.||+.++... .+....+..+++.++++.+||.+..+++|.+|||||||||+|||||+.
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~---- 155 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVN-MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM---- 155 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 999999973 33457999999986532 234455566778899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+.++.++.++|++++++| .|||++|||++++.++|||+
T Consensus 156 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tili~tH~~~~~~~~~d~i-------------- 208 (274)
T PRK13647 156 ---DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG----------KTVIVATHDVDLAAEWADQV-------------- 208 (274)
T ss_pred ---CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+++++
T Consensus 209 ----------------~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 209 ----------------IVLKEGRVLAEGDKSLL 225 (274)
T ss_pred ----------------EEEECCEEEEECCHHHh
Confidence 99999999999987654
No 80
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3e-53 Score=388.02 Aligned_cols=235 Identities=29% Similarity=0.512 Sum_probs=211.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+++.++|+.|+|+.++++++|||+|++||+|||+|||||||||.+.++.||.+||+|+|.++|.|+..+. -..+++..|
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lP-m~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP-MHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCC-hHHHhhcCc
Confidence 4689999999999999999999999999999999999999999999999999999999999999998753 344566679
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||+||++..|..+||+|||...+.... .....+.+.+++++|+.+++.+..+++..+||||||+|+.|||||+.
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~----- 156 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA----- 156 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc-----
Confidence 999999999999999999988764433 22223445567899999999999999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|+.+||||||||+||.+..+++++++.|+..| ..|+++-|+..+...+|||.
T Consensus 157 --~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg----------iGvLITDHNVREtL~i~dRa--------------- 209 (243)
T COG1137 157 --NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG----------IGVLITDHNVRETLDICDRA--------------- 209 (243)
T ss_pred --CCCEEEecCCccCCCchhHHHHHHHHHHHHhCC----------ceEEEccccHHHHHhhhheE---------------
Confidence 699999999999999999999999999999887 68999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
.++++|+|.++|+++++. .++.+++.+-|
T Consensus 210 ---------------YIi~~G~vla~G~p~ei~--~n~~Vr~~YLG 238 (243)
T COG1137 210 ---------------YIISDGKVLAEGSPEEIV--NNEDVRRVYLG 238 (243)
T ss_pred ---------------EEEecCeEEecCCHHHHh--cChhhhhhccc
Confidence 889999999999999987 46788887765
No 81
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.5e-51 Score=381.28 Aligned_cols=205 Identities=40% Similarity=0.624 Sum_probs=179.6
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccce
Q 016804 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~ 168 (382)
||+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 58999999999 4678999999999999999999999999999999999999999999999999876432111 111236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
++|+||++.+|+.+|+.||+.+..... +.......+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN----- 154 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC-----
Confidence 999999999998899999998864322 23344456678899999999988899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++++++ .|+|++||+++++..+|||+
T Consensus 155 --~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~i 207 (214)
T TIGR02673 155 --SPPLLLADEPTGNLDPDLSERILDLLKRLNKRG----------TTVIVATHDLSLVDRVAHRV 207 (214)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEE
Confidence 699999999999999999999999999997765 59999999999999999988
No 82
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-51 Score=399.64 Aligned_cols=221 Identities=34% Similarity=0.527 Sum_probs=192.2
Q ss_pred EEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhhh
Q 016804 92 IDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEI 164 (382)
Q Consensus 92 I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~~ 164 (382)
|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 469999999999999999999999999999999999999999999999998743111 1111
Q ss_pred ccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 165 ~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
.+.+||||||++ .+|+ .||+||+.|+... .+...++..+++.++++.+||. ...++++.+|||||||||+|||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFE-ETVEKDICFGPMN-FGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHhhEEEEeeCchhhhhh-hhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 233699999997 4665 6999999987532 2345556667889999999997 678999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||+|||+.++..+.++|++++++ | .|||++|||++++.++||||
T Consensus 161 ~~-------~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g----------~tviiitHd~~~~~~~~drv------- 216 (290)
T PRK13634 161 AM-------EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG----------LTTVLVTHSMEDAARYADQI------- 216 (290)
T ss_pred Hc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-------
Confidence 97 69999999999999999999999999999775 5 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+++++|+++++.
T Consensus 217 -----------------------~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 217 -----------------------VVMHKGTVFLQGTPREIF 234 (290)
T ss_pred -----------------------EEEECCEEEEECCHHHHh
Confidence 999999999999887764
No 83
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.8e-51 Score=401.95 Aligned_cols=219 Identities=33% Similarity=0.554 Sum_probs=195.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+++++|++|+|+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ... .+.++|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~--~~~-~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN--PKE-VQRNIG 78 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--hHH-HHhceE
Confidence 58999999999999999999999999999999999999999999999999999999999999987532 122 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+|+.||+.+.... .+.+.++..+++.++++.+||.+..++++.+|||||||||+|||||++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------- 150 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGI-YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIH------- 150 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhc-------
Confidence 999999999999999999876532 233445556678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|++|||||||+|||+.++..++++|+++++ + +|||++||+++++.++|||+
T Consensus 151 ~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sH~l~~~~~~~d~i----------------- 202 (301)
T TIGR03522 151 DPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-D----------KTIILSTHIMQEVEAICDRV----------------- 202 (301)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHHHhCCEE-----------------
Confidence 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+.+++.
T Consensus 203 -------------~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 203 -------------IIINKGKIVADKKLDELS 220 (301)
T ss_pred -------------EEEECCEEEEeCCHHHHH
Confidence 999999999999887763
No 84
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-51 Score=398.95 Aligned_cols=223 Identities=32% Similarity=0.515 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhh
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~ 163 (382)
||+++||+|+|+. +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5899999999973 259999999999999999999999999999999999999999999999998742111 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArA 240 (382)
..+.+||||||++ .+|+ .||+||+.|+.... +.+..+..+++.++++.+||. ++.++.+.+||||||||++||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence 1234699999997 6776 69999999876432 345566677889999999996 57899999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|++++++| .|||++|||++++..+||||
T Consensus 159 L~~-------~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~til~vtHd~~~~~~~~dri------- 214 (288)
T PRK13643 159 LAM-------EPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG----------QTVVLVTHLMDDVADYADYV------- 214 (288)
T ss_pred HHh-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEE-------
Confidence 996 699999999999999999999999999998765 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++++|+++++..
T Consensus 215 -----------------------~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 215 -----------------------YLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred -----------------------EEEECCEEEEECCHHHHHc
Confidence 9999999999998888653
No 85
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-51 Score=389.45 Aligned_cols=225 Identities=26% Similarity=0.494 Sum_probs=195.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .....+..+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP-GHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCC-HHHHHhcCe
Confidence 4799999999999889999999999999999999999999999999999999999999999999875432 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcC------C------C--CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENS------K------M--RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~------~------~--~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV 235 (382)
+|+||++.+|+.+||+||+.++..... . . ...+..+.+.++++.+|+.+..++++.+||||||||+
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 999999999999999999988532100 0 0 1122345678889999999899999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
+|||||+. +|++|||||||+|||+.++..+.++|.+++++ + .|||++||+++++.++||++
T Consensus 163 ~la~al~~-------~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tii~~sH~~~~~~~~~d~i- 224 (255)
T PRK11300 163 EIARCMVT-------QPEILMLDEPAAGLNPKETKELDELIAELRNEHN----------VTVLLIEHDMKLVMGISDRI- 224 (255)
T ss_pred HHHHHHhc-------CCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcC----------CEEEEEeCCHHHHHHhCCEE-
Confidence 99999997 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred cccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 315 LFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 225 -----------------------------~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 225 -----------------------------YVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred -----------------------------EEEECCeEEecCCHHHHhh
Confidence 9999999999998777653
No 86
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.2e-51 Score=380.60 Aligned_cols=208 Identities=33% Similarity=0.609 Sum_probs=184.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---~~-~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---IE-ALRRIGA 76 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch---HH-HHhhEEE
Confidence 4789999999888999999999999999999999999999999999999999999999999876432 11 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+++.+|++||+.++..... .. .+++.++++.+++.+..++++.+|||||||||+|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~-~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 144 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLG-IR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG-------N 144 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcC-Cc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhc-------C
Confidence 9999999988999999988653221 11 3457788999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|+++++++ .|+|++|||++++..+||++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~v------------------ 196 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQG----------ITVLISSHLLSEIQKVADRI------------------ 196 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHhcCEE------------------
Confidence 99999999999999999999999999998765 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEe
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 197 ------------~~l~~g~i~~~g 208 (208)
T cd03268 197 ------------GIINKGKLIEEG 208 (208)
T ss_pred ------------EEEECCEEEecC
Confidence 999999998764
No 87
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3e-51 Score=382.01 Aligned_cols=205 Identities=34% Similarity=0.557 Sum_probs=179.3
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccce
Q 016804 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~ 168 (382)
||+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 48999999999 6778999999999999999999999999999999999999999999999999875432211 111236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
++|+||++.+++.+|+.||+.+.... .+...++..+.+.++++.+++.+..++.+.+||||||||++|||||+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~----- 154 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLII-AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN----- 154 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHh-cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc-----
Confidence 99999999988889999999886532 223444555677889999999988999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+|||+
T Consensus 155 --~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i 207 (222)
T PRK10908 155 --KPAVLLADEPTGNLDDALSEGILRLFEEFNRVG----------VTVLMATHDIGLISRRSYRM 207 (222)
T ss_pred --CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999997765 59999999999999999988
No 88
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-51 Score=379.57 Aligned_cols=210 Identities=30% Similarity=0.597 Sum_probs=186.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~--~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----A--ARNRIGY 74 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----H--HHccEEE
Confidence 478999999998899999999999999999999999999999999999999999999999987531 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+++.+|++||+.+.... .+....+..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-------~ 146 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQL-KGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIH-------D 146 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhc-------C
Confidence 99999999989999999875432 223344556678899999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.+.|+++.+++ .|+|++|||++++.++||++
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i------------------ 198 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAG----------KTVILSTHQMELVEELCDRV------------------ 198 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhhhEE------------------
Confidence 99999999999999999999999999997765 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEe
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 199 ------------~~l~~g~i~~~~ 210 (210)
T cd03269 199 ------------LLLNKGRAVLYG 210 (210)
T ss_pred ------------EEEeCCEEEecC
Confidence 999999998754
No 89
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-51 Score=402.68 Aligned_cols=223 Identities=34% Similarity=0.542 Sum_probs=193.0
Q ss_pred eEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC------
Q 016804 91 LIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI------ 159 (382)
Q Consensus 91 ~I~~~nvs~~yg~~-----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~------ 159 (382)
+|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++.....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999743 5999999999999999999999999999999999999999999999987652110
Q ss_pred ----------------ChhhhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccc
Q 016804 160 ----------------SDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVE 220 (382)
Q Consensus 160 ----------------~~~~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~ 220 (382)
......+.+||||||++ .+|. .||+||+.|+... .+...++..+++.++++.+||. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGPVS-MGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccccc-ccHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 00111234699999986 4554 6999999987642 3456667778899999999996 789
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 016804 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (382)
Q Consensus 221 ~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivT 300 (382)
++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|++++++| .|||+||
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~-------~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivt 222 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAM-------EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQG----------KTIILVT 222 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEe
Confidence 99999999999999999999997 699999999999999999999999999998766 5999999
Q ss_pred cCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 301 HQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 301 Hdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
||++.+.++|||| ++|++|++++.|+++++..
T Consensus 223 Hd~~~~~~~adrv------------------------------~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 223 HDLDNVLEWTKRT------------------------------IFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred eCHHHHHHhCCEE------------------------------EEEECCEEEEECCHHHHhc
Confidence 9999999999988 9999999999998888654
No 90
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-51 Score=380.18 Aligned_cols=211 Identities=30% Similarity=0.562 Sum_probs=186.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++.... .. .+.+++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~-~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP--QK-LRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch--HH-HHhheEE
Confidence 47899999998889999999999999 99999999999999999999999999999999998865422 22 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+||.||+.+..... +....+..+.+.++++.+|+.+..++++.+|||||||||+|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 148 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG-------D 148 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998865322 23344456678899999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|++++++ .|+|++|||++++.++|||+
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~vsH~~~~~~~~~d~i------------------ 199 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGED-----------RIVILSTHIVEDVESLCNQV------------------ 199 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCC-----------CEEEEEcCCHHHHHHhCCEE------------------
Confidence 9999999999999999999999999999753 49999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEe
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 200 ------------~~l~~g~i~~~g 211 (211)
T cd03264 200 ------------AVLNKGKLVFEG 211 (211)
T ss_pred ------------EEEECCEEEecC
Confidence 999999998764
No 91
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-51 Score=395.67 Aligned_cols=233 Identities=35% Similarity=0.540 Sum_probs=201.6
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--hccceEE
Q 016804 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--ISGLRIG 170 (382)
Q Consensus 93 ~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~~~~~Ig 170 (382)
.++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++........ ..+.+++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 57899999999999999999999999999999999999999999999999999999999998754321111 1223699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+|+.||+.+.... .+....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~------- 177 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEV-QGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAV------- 177 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhc-------
Confidence 999999999889999999886532 223344455678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|+++.++ | .|+|++|||++++.++||++
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiii~tH~~~~~~~~~d~v---------------- 231 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQ----------KTIVFITHDLDEALRLGDRI---------------- 231 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE----------------
Confidence 69999999999999999999999999999765 4 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. +.+++...|+.
T Consensus 232 --------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 262 (269)
T cd03294 232 --------------AIMKDGRLVQVGTPEEILTNPANDYVREFFR 262 (269)
T ss_pred --------------EEEECCEEEEeCCHHHHHhCcCcHHHHHHHh
Confidence 9999999999998888753 45667777765
No 92
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-51 Score=386.32 Aligned_cols=235 Identities=34% Similarity=0.525 Sum_probs=199.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++.... ... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~-~~~-~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD-VIE-L 80 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC-HHH-H
Confidence 59999999999988999999999999999999999999999999999999974 7999999999875432 222 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCC-CCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIArA 240 (382)
+.+|||+||++.+++.+||.||+.++...... ....+..+.+.++++.+||.+ ..++.+.+|||||||||+||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 33699999999888889999999886532211 133455667889999999853 5788999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.+.|+++.+ + .|+|++|||++++.++|||+
T Consensus 161 l~~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i------- 215 (250)
T PRK14247 161 LAF-------QPEVLLADEPTANLDPENTAKIESLFLELKK-D----------MTIVLVTHFPQQAARISDYV------- 215 (250)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCEE-------
Confidence 997 6999999999999999999999999999864 4 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcCC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGS 375 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~ 375 (382)
++|++|++++.|++.++.. +.++.+..|+.+.
T Consensus 216 -----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (250)
T PRK14247 216 -----------------------AFLYKGQIVEWGPTREVFTNPRHELTEKYVTGR 248 (250)
T ss_pred -----------------------EEEECCeEEEECCHHHHHcCCccHHHHHHhhcc
Confidence 9999999999998888753 3456666676554
No 93
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.6e-51 Score=379.19 Aligned_cols=204 Identities=36% Similarity=0.553 Sum_probs=178.3
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccceE
Q 016804 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~I 169 (382)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.+|
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 68999999999999999999999999999999999999999999999999875432111 1122369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+.+|++||+.++.... +...++..+++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------ 153 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVT-GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN------ 153 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc------
Confidence 99999999999899999998865322 23444556678899999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.+.|+++.+++ .|+|++|||++++..+||++
T Consensus 154 -~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tiiivtH~~~~~~~~~d~i 206 (214)
T cd03292 154 -SPTILIADEPTGNLDPDTTWEIMNLLKKINKAG----------TTVVVATHAKELVDTTRHRV 206 (214)
T ss_pred -CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999997665 59999999999999999988
No 94
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-51 Score=388.67 Aligned_cols=236 Identities=29% Similarity=0.496 Sum_probs=200.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.........
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 46999999999998889999999999999999999999999999999999986 5899999999987421111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+|+|+||++.+|+ .|++||+.++.......+.++..+++.++++.+++. +..++.+.+||||||||++||||
T Consensus 92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 170 (260)
T PRK10744 92 LRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARG 170 (260)
T ss_pred HhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 2336999999999998 799999987653222344455566788999999984 45788999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.+.|+++.+ + .|+|++||+++.+..+|||+
T Consensus 171 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~----------~tiii~sH~~~~~~~~~d~i------- 225 (260)
T PRK10744 171 IAI-------RPEVLLLDEPCSALDPISTGRIEELITELKQ-D----------YTVVIVTHNMQQAARCSDYT------- 225 (260)
T ss_pred HHC-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEE-------
Confidence 997 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+.+++.+
T Consensus 226 -----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 257 (260)
T PRK10744 226 -----------------------AFMYLGELIEFGNTDTIFTKPAKKQTEDYITG 257 (260)
T ss_pred -----------------------EEEECCEEEEeCCHHHHHhCCCcHHHHHHHhh
Confidence 999999999999888875 3456777777654
No 95
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-51 Score=402.91 Aligned_cols=227 Identities=30% Similarity=0.466 Sum_probs=195.8
Q ss_pred CCcceEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC--
Q 016804 87 DGDVLIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI-- 159 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~-- 159 (382)
.++++|+++||+++|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++....
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 44578999999999974 35999999999999999999999999999999999999999999999999874320
Q ss_pred ------------ChhhhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCC
Q 016804 160 ------------SDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLP 224 (382)
Q Consensus 160 ------------~~~~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~ 224 (382)
......+.+||||||++ .+|+ .||+||+.++... .+.+.++..+++.++++.+||. ++.++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVA-LGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHh-cCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 01111234699999997 5776 5999999887532 2345556667788999999996 6889999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
.+|||||||||+|||||+. +|++|||||||+|||+.++..++++|+++++++ .|||+||||++
T Consensus 175 ~~LSgGqkqRvaiAraL~~-------~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~TiiivtHd~~ 237 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAI-------QPEILIFDEPTAGLDPKGEHEMMQLILDAKANN----------KTVFVITHTME 237 (320)
T ss_pred ccCCHHHHHHHHHHHHHHc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHH
Confidence 9999999999999999997 699999999999999999999999999997765 59999999999
Q ss_pred HHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 305 TIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 305 ~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++.++|||+ ++|++|++++.|+++++..
T Consensus 238 ~~~~~adri------------------------------~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 238 HVLEVADEV------------------------------IVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHhCCEE------------------------------EEEECCEEEEeCCHHHHhc
Confidence 999999988 9999999999998877643
No 96
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-51 Score=396.02 Aligned_cols=222 Identities=32% Similarity=0.541 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
++|+++||+++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..... +
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~-~ 80 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE-NVWDI-R 80 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC-cHHHH-H
Confidence 36999999999963 4599999999999999999999999999999999999999999999999987542 22222 2
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 167 ~~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
.++||+||++. +++..||+||+.++... .+.++++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~-- 157 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLEN-KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM-- 157 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 36999999984 66678999999987532 234566667788999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++ | +|||++|||++++. .|||+
T Consensus 158 -----~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tilivtH~~~~~~-~~dri----------- 210 (279)
T PRK13650 158 -----RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ----------MTVISITHDLDEVA-LSDRV----------- 210 (279)
T ss_pred -----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHH-hCCEE-----------
Confidence 69999999999999999999999999999875 5 59999999999984 78877
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++..|+++++..
T Consensus 211 -------------------~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 211 -------------------LVMKNGQVESTSTPRELFS 229 (279)
T ss_pred -------------------EEEECCEEEEECCHHHHHc
Confidence 9999999999998887653
No 97
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.6e-51 Score=380.64 Aligned_cols=218 Identities=35% Similarity=0.600 Sum_probs=183.6
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh-hhhc
Q 016804 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD-EEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~-~~~~ 165 (382)
+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 48899999999765 799999999999999999999999999999999999999999999999987543211 1112
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHH-HHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISEL-VKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+++|+||++ .+++.+||++|+.+...........+..+. +.++++.+++. ...++.+.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 33699999998 567779999999876432221112222222 35789999995 678999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||++||+.++..+.+.|++++++ + .|||++|||++++..+||++
T Consensus 161 ~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~i------- 216 (228)
T cd03257 161 AL-------NPKLLIADEPTSALDVSVQAQILDLLKKLQEELG----------LTLLFITHDLGVVAKIADRV------- 216 (228)
T ss_pred hc-------CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeE-------
Confidence 97 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 217 -----------------------~~l~~G~i~~~g 228 (228)
T cd03257 217 -----------------------AVMYAGKIVEEG 228 (228)
T ss_pred -----------------------EEEeCCEEEecC
Confidence 999999998754
No 98
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-51 Score=385.49 Aligned_cols=222 Identities=25% Similarity=0.417 Sum_probs=193.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .....+.++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQ-TAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCC-HHHHHHhCE
Confidence 4799999999999888999999999999999999999999999999999999999999999999875432 211123369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHc-CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~-gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
+|+||++.+|+.+||.+|+.+.... . ...+..+.+.++++.+ ++.+..++++.+||||||||++|||||+.
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~-~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFF-A--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS----- 154 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhc-c--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh-----
Confidence 9999999999989999999875421 1 2233445567778888 58777888999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||+|||+.++..+.+.|+++++++ .|+|++|||++++.++|||+
T Consensus 155 --~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i--------------- 207 (237)
T PRK11614 155 --QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG----------MTIFLVEQNANQALKLADRG--------------- 207 (237)
T ss_pred --CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCcHHHHHhhCCEE---------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 208 ---------------~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 208 ---------------YVLENGHVVLEDTGDALLA 226 (237)
T ss_pred ---------------EEEeCCEEEeeCCHHHHhc
Confidence 9999999999998887753
No 99
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-51 Score=386.22 Aligned_cols=236 Identities=32% Similarity=0.539 Sum_probs=199.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCC-CChhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGL-ISDEE 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~-~~~~~ 163 (382)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... .....
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 469999999999988899999999999999999999999999999999999987 499999999987521 11111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCC-CCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIA 238 (382)
.+.+|+|+||++.+|+.+|+.||+.++...... ...++..+++.++++.+++. ...++++.+||||||||++||
T Consensus 83 -~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 83 -VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred -HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 233699999999999989999999876532211 13344556678899999984 356889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++|||++++..+|||+
T Consensus 162 ral~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i----- 218 (253)
T PRK14267 162 RALAM-------KPKILLMDEPTANIDPVGTAKIEELLFELKK-E----------YTIVLVTHSPAQAARVSDYV----- 218 (253)
T ss_pred HHHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-C----------CEEEEEECCHHHHHhhCCEE-----
Confidence 99997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++.. +.++....|+.|
T Consensus 219 -------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (253)
T PRK14267 219 -------------------------AFLYLGKLIEVGPTRKVFENPEHELTEKYVTG 250 (253)
T ss_pred -------------------------EEEECCEEEEeCCHHHHHhCCCcHHHHHHhcc
Confidence 9999999999998888753 445677777765
No 100
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-50 Score=385.30 Aligned_cols=237 Identities=30% Similarity=0.485 Sum_probs=200.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~--p---~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++..........
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 4899999999998889999999999999999999999999999999999986 4 6999999999875321111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+|+|+||++.+|+.+|++||+.++..........+..+++.++++.+++.. ..++.+.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 34699999999999989999999876432221233445567888999999853 56788999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.++|+++.++ .|+|++||+++++.++|||+
T Consensus 164 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-----------~tiiivsH~~~~~~~~~d~i-------- 217 (252)
T PRK14256 164 AV-------KPEVILMDEPASALDPISTLKIEELIEELKEK-----------YTIIIVTHNMQQAARVSDYT-------- 217 (252)
T ss_pred hc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-----------CcEEEEECCHHHHHhhCCEE--------
Confidence 97 69999999999999999999999999999753 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++|++++.|+++++. .+.++.+..++.+.
T Consensus 218 ----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (252)
T PRK14256 218 ----------------------AFFYMGDLVECGETKKIFTTPEKKQTEDYITGR 250 (252)
T ss_pred ----------------------EEEECCEEEEeCCHHHHHhCCCcHHHHHHHhhc
Confidence 999999999999888864 45678888887653
No 101
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-51 Score=386.10 Aligned_cols=231 Identities=34% Similarity=0.523 Sum_probs=199.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +..++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-~~~~-~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID-VIDL-RRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC-hHHh-hhcEE
Confidence 589999999998889999999999999999999999999999999999999999999999999875432 1222 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+||++.+|+ .|++||+.+..... . . ..+++.++++.+++. +..++++.+||||||||++|||||+.
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~-~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~------ 148 (241)
T PRK14250 81 MVFQQPHLFE-GTVKDNIEYGPMLK-G--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN------ 148 (241)
T ss_pred EEecCchhch-hhHHHHHhcchhhc-C--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc------
Confidence 9999999997 69999998754211 1 1 134577899999996 67899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+.++..+.+.|+++.++ | .|+|++|||++++..+|||+
T Consensus 149 -~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tii~~sH~~~~~~~~~d~i--------------- 202 (241)
T PRK14250 149 -NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN----------LTVIWITHNMEQAKRIGDYT--------------- 202 (241)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeccHHHHHHhCCEE---------------
Confidence 69999999999999999999999999999774 5 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
++|++|++++.|++.++. .+.+++...|..+.+
T Consensus 203 ---------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (241)
T PRK14250 203 ---------------AFLNKGILVEYAKTYDFFTNPQNEVTKLFIQGKL 236 (241)
T ss_pred ---------------EEEeCCEEEEeCCHHHHhcCCCcHHHHHHHhchh
Confidence 999999999999888875 345677787776543
No 102
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.3e-51 Score=383.03 Aligned_cols=220 Identities=30% Similarity=0.538 Sum_probs=192.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ... ..+++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~-~~~--~~~i~ 77 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAP-RAA--LARLG 77 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCC-hhh--hhhEE
Confidence 588999999999889999999999999999999999999999999999999999999999999875432 111 12699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+++.+|++||+.+..... +....+..+.+.++++.+|+.+..++.+.+||||||||++|||||+.
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~------- 149 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLH------- 149 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999888899999998764322 23344455678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.+.|++++++ + .|+|++||+++++.. |||+
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~-~d~i---------------- 202 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQG----------LSVLWATHLVDEIEA-DDRL---------------- 202 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecChhhHhh-CCEE----------------
Confidence 69999999999999999999999999999753 5 599999999999975 8877
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 203 --------------~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 203 --------------VVLHRGRVLADGAAAELRG 221 (236)
T ss_pred --------------EEEeCCeEEEeCCHHHHHH
Confidence 9999999999998777653
No 103
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.1e-51 Score=401.55 Aligned_cols=212 Identities=32% Similarity=0.566 Sum_probs=188.3
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 99 ~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
|+|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... .... +.+|||+||++.+
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~-~~~i~~~~q~~~~ 77 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE--PRKV-RRSIGIVPQYASV 77 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--HHHH-HhhcEEecCCCCC
Confidence 478888999999999999999999999999999999999999999999999999987531 1221 3369999999999
Q ss_pred CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe
Q 016804 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD 258 (382)
|+.+||+||+.+.... .+....+..+++.++++.+||.+..++++.+|||||||||+|||||++ +|++||||
T Consensus 78 ~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-------~p~lllLD 149 (302)
T TIGR01188 78 DEDLTGRENLEMMGRL-YGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIH-------QPDVLFLD 149 (302)
T ss_pred CCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhc-------CCCEEEEe
Confidence 9999999999886432 234445556678899999999988999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccc
Q 016804 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVF 338 (382)
Q Consensus 259 EPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (382)
|||+|||+.++..++++|++++++| .|||++||+++++.++|||+
T Consensus 150 EPt~gLD~~~~~~l~~~l~~~~~~g----------~tvi~~sH~~~~~~~~~d~v------------------------- 194 (302)
T TIGR01188 150 EPTTGLDPRTRRAIWDYIRALKEEG----------VTILLTTHYMEEADKLCDRI------------------------- 194 (302)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE-------------------------
Confidence 9999999999999999999998766 59999999999999999988
Q ss_pred cccEEEEEeCCeEEEEecccccc
Q 016804 339 FIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 339 ~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 195 -----~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 195 -----AIIDHGRIIAEGTPEELK 212 (302)
T ss_pred -----EEEECCEEEEECCHHHHH
Confidence 999999999999887753
No 104
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=7.7e-51 Score=390.60 Aligned_cols=237 Identities=29% Similarity=0.497 Sum_probs=201.6
Q ss_pred cceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC
Q 016804 89 DVLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~---------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~ 159 (382)
+++|+++||+|+|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~- 80 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG- 80 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC-
Confidence 357999999999962 4699999999999999999999999999999999999999999999999987532
Q ss_pred ChhhhccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHH
Q 016804 160 SDEEISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 160 ~~~~~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVa 236 (382)
.... .+.+|+|+||++. +++.+|+.+|+.+....+......+..+.+.++++.+|+. ...++++.+|||||||||+
T Consensus 81 ~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 81 DYSY-RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred chhh-HhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 1111 2236999999975 6778899999987654332334445566788999999994 6788899999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
|||||+. +|+||||||||++||+.++..+.++|+++.++ | .|||++||+++++..+|||+
T Consensus 160 laral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tviivsH~~~~~~~~~d~i-- 220 (267)
T PRK15112 160 LARALIL-------RPKVIIADEALASLDMSMRSQLINLMLELQEKQG----------ISYIYVTQHLGMMKHISDQV-- 220 (267)
T ss_pred HHHHHHh-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEeCCHHHHHHhcCEE--
Confidence 9999997 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++.. +.++.+..++.+
T Consensus 221 ----------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 221 ----------------------------LVMHQGEVVERGSTADVLASPLHELTKRLIAG 252 (267)
T ss_pred ----------------------------EEEECCEEEecCCHHHHhcCCCCHHHHHHHHh
Confidence 9999999999998887754 456777777654
No 105
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.4e-51 Score=423.46 Aligned_cols=240 Identities=33% Similarity=0.566 Sum_probs=210.9
Q ss_pred CcceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 88 GDVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~-----------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
.+++++++||+|+|.. ..+++||||++.+||++||||+||||||||.|+|+||++|++|+|.++|.+ .
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-L 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-c
Confidence 6789999999999972 368999999999999999999999999999999999999999999999987 3
Q ss_pred CCCChhh-hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHH
Q 016804 157 GLISDEE-ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMK 232 (382)
Q Consensus 157 ~~~~~~~-~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqr 232 (382)
....... ..++++-+||||| .|.|.+||++++..++..+......+.++++.++++.+||.. +++++|++||||||
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 2222211 1234689999998 489999999999998865554445666778999999999975 89999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
|||+|||||+. +|++|++|||||+||+..+..+.++|++++++-+ .|+|+||||+..++.+|||
T Consensus 436 QRvaIARALa~-------~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g---------~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 436 QRVAIARALAL-------EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG---------LTYLFISHDLAVVRYIADR 499 (539)
T ss_pred HHHHHHHHHhc-------CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhC---------CEEEEEeCCHHHHHhhCce
Confidence 99999999986 6999999999999999999999999999998732 6999999999999999998
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
| +||++|+||+.|++++++ .+++++++.+...
T Consensus 500 v------------------------------~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 500 V------------------------------AVMYDGRIVEEGPTEKVFENPQHPYTRKLLAA 532 (539)
T ss_pred E------------------------------EEEECCeEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 8 999999999999777765 5789999998864
No 106
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=386.69 Aligned_cols=237 Identities=28% Similarity=0.462 Sum_probs=199.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~--p---~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++||++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++........
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 357999999999998899999999999999999999999999999999999997 3 69999999998743111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|||+||++.+|+. |++||+.+.........+++..+++.++++.+++. +..++.+.+||||||||++|||
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 123369999999999985 99999987643221123344556678899999985 3568899999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++.++|||+
T Consensus 169 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiivtH~~~~~~~~~d~i------ 224 (259)
T PRK14274 169 ALAT-------NPDVLLMDEPTSALDPVSTRKIEELILKLKE-K----------YTIVIVTHNMQQAARVSDQT------ 224 (259)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEEcCHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999965 4 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|+++++|+++++. .+.++.+.+|+.+
T Consensus 225 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 256 (259)
T PRK14274 225 ------------------------AFFYMGELVECNDTNKMFSNPDDQRTLDYITG 256 (259)
T ss_pred ------------------------EEEECCEEEEECCHHHHhhCCCCHHHHHhhcc
Confidence 999999999999888875 4566777777765
No 107
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-51 Score=393.05 Aligned_cols=224 Identities=26% Similarity=0.439 Sum_probs=192.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..........+.+|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 58999999999988899999999999999999999999999999999999999999999999987421111111223699
Q ss_pred EEecCCCC-CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~l-~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+||++.+ +...|+.+|+.+.... .+....+..+++.++++.+|+.++.++++.+||||||||++|||||+.
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~------ 153 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN-LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL------ 153 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc------
Confidence 99999863 3346899999876432 233445556678889999999988999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|++++++| .|||++|||++++..+|||+
T Consensus 154 -~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~vtH~~~~~~~~~d~i---------------- 206 (271)
T PRK13638 154 -QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG----------NHVIISSHDIDLIYEISDAV---------------- 206 (271)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|++.++..
T Consensus 207 --------------~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 207 --------------YVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred --------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998777643
No 108
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=384.52 Aligned_cols=237 Identities=28% Similarity=0.455 Sum_probs=200.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 679999999999988899999999999999999999999999999999999875 899999999987532111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+++|+||++.+|+ +|++||+.+...........+..+++.++++.+++. +..++++.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 2336999999999997 899999987653222112344556678899999874 45788999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++.++ .|+|++||+++++.++|||+
T Consensus 162 l~~-------~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~-----------~tiiivsH~~~~~~~~~d~v------- 216 (251)
T PRK14270 162 IAV-------KPDVILMDEPTSALDPISTLKIEDLMVELKKE-----------YTIVIVTHNMQQASRVSDYT------- 216 (251)
T ss_pred Hhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-----------CeEEEEEcCHHHHHHhcCEE-------
Confidence 997 69999999999999999999999999999763 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++|++++.|+++++. .+.++.+.+|+...
T Consensus 217 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (251)
T PRK14270 217 -----------------------AFFLMGDLIEFNKTEKIFLEPQKKETEDYISGR 249 (251)
T ss_pred -----------------------EEEECCeEEEeCCHHHHhcCCCChHHHHhhccc
Confidence 999999999999888875 45677888777543
No 109
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-51 Score=394.28 Aligned_cols=224 Identities=29% Similarity=0.538 Sum_probs=194.1
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++|+++||+++|+ ++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..........+.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4799999999996 577999999999999999999999999999999999999999999999999874211111112236
Q ss_pred EEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 169 IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 169 Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
|||+||++ .+++ .|++||+.++.... +.+..+..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 84 ig~v~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~--- 158 (283)
T PRK13636 84 VGMVFQDPDNQLFS-ASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--- 158 (283)
T ss_pred EEEEecCcchhhcc-ccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc---
Confidence 99999997 3454 79999998865322 34455556778999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||+|||+.++..+.++|++++++ | .|||++|||++++..+|||+
T Consensus 159 ----~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tillvsH~~~~~~~~~dri------------ 212 (283)
T PRK13636 159 ----EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG----------LTIIIATHDIDIVPLYCDNV------------ 212 (283)
T ss_pred ----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEE------------
Confidence 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 213 ------------------~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 213 ------------------FVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred ------------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998877653
No 110
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-51 Score=395.11 Aligned_cols=222 Identities=31% Similarity=0.483 Sum_probs=192.0
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhh
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~ 163 (382)
+|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5899999999974 469999999999999999999999999999999999999999999999998743211 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArA 240 (382)
..+..|||+||++ .+| .+||+||+.++.... ....++..+++.++++.+||+ ++.++++.+||||||||++||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 1233699999997 456 479999998765322 244555667789999999997 68899999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|++++++| .|||++|||++++.++|||+
T Consensus 160 l~~-------~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~tvlivsH~~~~~~~~~d~v------- 215 (287)
T PRK13641 160 MAY-------EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAG----------HTVILVTHNMDDVAEYADDV------- 215 (287)
T ss_pred HHc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-------
Confidence 997 699999999999999999999999999997665 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 -----------------------~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 -----------------------LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred -----------------------EEEECCEEEEeCCHHHHh
Confidence 999999999999877754
No 111
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.5e-51 Score=378.75 Aligned_cols=204 Identities=37% Similarity=0.632 Sum_probs=175.2
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--h
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~ 164 (382)
+|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........ .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4789999999964 579999999999999999999999999999999999999999999999998754322111 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+.+|+|+||++.+|+.+|++||+.+..... .....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~- 158 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIG-KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN- 158 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC-
Confidence 1236999999999998899999998854321 23333445667889999999988999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.+.|++++++ + .|+|++|||++++.. ||++
T Consensus 159 ------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~tH~~~~~~~-~d~v 211 (221)
T TIGR02211 159 ------QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN----------TSFLVVTHDLELAKK-LDRV 211 (221)
T ss_pred ------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHhh-cCEE
Confidence 69999999999999999999999999999765 4 599999999998865 6877
No 112
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=388.68 Aligned_cols=239 Identities=28% Similarity=0.465 Sum_probs=199.3
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCCh
Q 016804 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~ 161 (382)
...++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++......
T Consensus 17 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 17 AKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 34568999999999998889999999999999999999999999999999999865 7999999999987532111
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHH
Q 016804 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaI 237 (382)
....+.+|+|+||++.+|+. |++||+.++............++.+.++++.+++. +..++.+.+||||||||++|
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~l 175 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCI 175 (268)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHH
Confidence 11123369999999999985 99999987643221112233455677889999884 45688999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++.++|||+
T Consensus 176 aral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~v---- 233 (268)
T PRK14248 176 ARTLAM-------KPAVLLLDEPASALDPISNAKIEELITELKE-E----------YSIIIVTHNMQQALRVSDRT---- 233 (268)
T ss_pred HHHHhC-------CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C----------CEEEEEEeCHHHHHHhCCEE----
Confidence 999997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+..++.+
T Consensus 234 --------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 265 (268)
T PRK14248 234 --------------------------AFFLNGDLVEYDQTEQIFTSPKQQKTEDYING 265 (268)
T ss_pred --------------------------EEEECCEEEEeCCHHHHHhCCCChHHHHHHhc
Confidence 999999999999888765 3466777777765
No 113
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-50 Score=383.58 Aligned_cols=236 Identities=33% Similarity=0.512 Sum_probs=197.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC---CCC--CccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL---LAP--DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl---~~p--~sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|+++.........
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 579999999999988999999999999999999999999999999999997 455 599999999987532111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+|+|+||++.+|+ .|++||+.++.........+...+.+.++++.+++.+ ..++.+.+||||||||++||||
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 2336999999999987 6999999876532211123345567788999999853 5688899999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++.++|||+
T Consensus 161 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiivtH~~~~~~~~~d~v------- 215 (250)
T PRK14245 161 MAV-------SPSVLLMDEPASALDPISTAKVEELIHELKK-D----------YTIVIVTHNMQQAARVSDKT------- 215 (250)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHhhCCEE-------
Confidence 997 6999999999999999999999999999954 4 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. ++.++.+.+|+.+
T Consensus 216 -----------------------~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14245 216 -----------------------AFFYMGEMVEYDDTKKIFTNPEKEATQNYITG 247 (250)
T ss_pred -----------------------EEEECCEEEEECCHHHHhcCCCChHHHHhhcc
Confidence 999999999999888875 4456777776654
No 114
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-51 Score=394.95 Aligned_cols=223 Identities=29% Similarity=0.478 Sum_probs=193.2
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hh
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~ 163 (382)
.|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...... ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999963 3699999999999999999999999999999999999999999999999987532111 11
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArA 240 (382)
..+.+||||||++ .+|+ .||+||+.++... .+.+..+..+++.++++.+||. +..++.+.+|||||||||+||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara 159 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKN-FKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI 159 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1233699999997 5676 5999999987532 2345566677889999999997 68899999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
|+. +|++|||||||+|||+.++..+.++|++++++ | .|||+||||++++.++|||+
T Consensus 160 L~~-------~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvl~vtH~~~~~~~~~dri------ 216 (286)
T PRK13646 160 LAM-------NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN----------KTIILVSHDMNEVARYADEV------ 216 (286)
T ss_pred HHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEE------
Confidence 997 69999999999999999999999999999764 5 59999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|++.++..
T Consensus 217 ------------------------~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 217 ------------------------IVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred ------------------------EEEECCEEEEECCHHHHHh
Confidence 9999999999998877653
No 115
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-51 Score=390.21 Aligned_cols=225 Identities=28% Similarity=0.405 Sum_probs=195.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +..
T Consensus 9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~-~~~ 86 (265)
T PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS-SKAF-ARK 86 (265)
T ss_pred CceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCC-HHHH-hhh
Confidence 46799999999999889999999999999999999999999999999999999999999999999875422 2222 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
++|+||++.+++.+|+.||+.++...... .......+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~-- 164 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ-- 164 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc--
Confidence 99999999888889999999875321110 1122345667889999999988999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+||||||||+|||+.++..+.++|++++++ + .|+|++||+++++.++|||+
T Consensus 165 -----~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~----------~tiii~sH~~~~i~~~~d~i----------- 218 (265)
T PRK10575 165 -----DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG----------LTVIAVLHDINMAARYCDYL----------- 218 (265)
T ss_pred -----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|++.++..
T Consensus 219 -------------------~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 219 -------------------VALRGGEMIAQGTPAELMR 237 (265)
T ss_pred -------------------EEEECCeEEEecCHHHhcC
Confidence 9999999999998777653
No 116
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-51 Score=387.22 Aligned_cols=231 Identities=28% Similarity=0.426 Sum_probs=197.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+. +..++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~-~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML-SSRQL-ARRLA 79 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC-CHHHH-hhheE
Confidence 68999999999988999999999999999999999999999999999999999999999999986432 12222 23599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
|+||++.+++.+|++||+.++.... .........+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~---- 155 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ---- 155 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc----
Confidence 9999999988899999998753111 111123345567889999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|+++.+++ .|+|++||+++++.++|||+
T Consensus 156 ---~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~----------~tiii~tH~~~~~~~~~d~i-------------- 208 (255)
T PRK11231 156 ---DTPVVLLDEPTTYLDINHQVELMRLMRELNTQG----------KTVVTVLHDLNQASRYCDHL-------------- 208 (255)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEECCHHHHHHhcCEE--------------
Confidence 699999999999999999999999999997765 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|++++.|+++++.. .+.+.+++
T Consensus 209 ----------------~~l~~G~i~~~~~~~~~~~--~~~~~~~~ 235 (255)
T PRK11231 209 ----------------VVLANGHVMAQGTPEEVMT--PGLLRTVF 235 (255)
T ss_pred ----------------EEEECCeEEEEcCHHHhcC--HHHHHHHh
Confidence 9999999999998777653 23444544
No 117
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-51 Score=388.22 Aligned_cols=228 Identities=34% Similarity=0.490 Sum_probs=193.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... .... +.+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~-~~~~-~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWS-PAEL-ARRRA 79 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCC-HHHh-hhheE
Confidence 589999999999889999999999999999999999999999999999999999999999999865432 1221 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+++.+||+||+.+..... ....++..+.+.++++.+|+.+..++.+.+|||||||||+|||||+..+.. -.
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~-~~ 157 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPH-GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP-DG 157 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhccc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc-CC
Confidence 9999999877899999998854221 122233455678899999999889999999999999999999999930000 01
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~-~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|+++. +++ .|||++|||++++.++|||+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i---------------- 211 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG----------LAVIVVLHDLNLAARYADRI---------------- 211 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhcCEE----------------
Confidence 599999999999999999999999999997 445 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 212 --------------~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 212 --------------VLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred --------------EEEECCEEEeeCCHHHHhC
Confidence 9999999999998777653
No 118
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.4e-50 Score=378.52 Aligned_cols=216 Identities=35% Similarity=0.530 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--h
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--E 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~ 163 (382)
++|+++||+++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 57999999999975 35999999999999999999999999999999999999999999999999875432211 1
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
..+.+++|+||++.+++.+|++||+.+..... .....+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLR-GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11236999999999999899999998764322 23344556778899999999988899999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+|++|||||||+|||+.++..+.+.|++++++ + .|||++|||++++.. ||++
T Consensus 164 -------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~-~d~i--------- 216 (228)
T PRK10584 164 -------RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG----------TTLILVTHDLQLAAR-CDRR--------- 216 (228)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHh-CCEE---------
Confidence 69999999999999999999999999999765 4 599999999998854 8877
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEE
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQ 354 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~ 354 (382)
++|++|++++.
T Consensus 217 ---------------------~~l~~g~i~~~ 227 (228)
T PRK10584 217 ---------------------LRLVNGQLQEE 227 (228)
T ss_pred ---------------------EEEECCEEEec
Confidence 99999999753
No 119
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-50 Score=385.53 Aligned_cols=236 Identities=32% Similarity=0.502 Sum_probs=198.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..........
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999988999999999999999999999999999999999999974 7999999999864211111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+..|+|+||++.+|+.+|++||+.++..........+..+++.++++.+|+. +..++.+.+|||||||||+|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3369999999999998999999987653222123445566788899999984 467889999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.++|+++++ + .|+|++||+++++.++|||+
T Consensus 164 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tviivsH~~~~~~~~~d~i-------- 217 (258)
T PRK14241 164 AV-------EPDVLLMDEPCSALDPISTLAIEDLINELKQ-D----------YTIVIVTHNMQQAARVSDQT-------- 217 (258)
T ss_pred hc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEecCHHHHHHhCCEE--------
Confidence 97 6999999999999999999999999999964 3 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEe------CCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLY------EGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~------~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|+ +|+|++.|+++++. .+.++.+.+++.+
T Consensus 218 ----------------------~~l~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK14241 218 ----------------------AFFNLEATGKPGRLVEIDDTEKIFSNPTQKATEDYISG 255 (258)
T ss_pred ----------------------EEEecccCCCCceEEecCCHHHHHhCcCcHHHHHHHhh
Confidence 7886 79999999888875 3445666776654
No 120
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.8e-50 Score=385.42 Aligned_cols=237 Identities=32% Similarity=0.517 Sum_probs=199.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE-----CCCCCChhh-
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-----RAGLISDEE- 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~-----i~~~~~~~~- 163 (382)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +........
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999999987 543211111
Q ss_pred -hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 164 -ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 -~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+..++|+||++ .+++.+|+++|+.+...........+..+.+.++++.+++. ...++.+.+||||||||++|||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 1123599999998 36777899999977542221122334566788999999997 4788999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||+. +|++|||||||++||+.++..+.+.|+++.++ | .|+|++|||++++.++||++
T Consensus 165 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~isH~~~~~~~~~d~i----- 222 (258)
T PRK11701 165 NLVT-------HPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG----------LAVVIVTHDLAVARLLAHRL----- 222 (258)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHhcCEE-----
Confidence 9997 69999999999999999999999999999765 4 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. ++.+++...|+.
T Consensus 223 -------------------------~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 253 (258)
T PRK11701 223 -------------------------LVMKQGRVVESGLTDQVLDDPQHPYTQLLVS 253 (258)
T ss_pred -------------------------EEEECCEEEEeCCHHHHhcCCCCHHHHHHHH
Confidence 999999999999888875 345566666654
No 121
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.7e-51 Score=377.96 Aligned_cols=194 Identities=31% Similarity=0.509 Sum_probs=169.5
Q ss_pred EEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 93 DCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 93 ~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
+++||+++|++ +++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.. .. .+.+|+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~-~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA----KE-RRKSIGY 75 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh----HH-hhcceEE
Confidence 46899999987 789999999999999999999999999999999999999999999999998632 11 2236999
Q ss_pred EecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 172 VFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 172 V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
+||++. .+..+|++||+.++.... . . ..+++.++++.+|+.++.++++.+||||||||++|||||+.
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~-~--~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 143 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKEL-D--A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLS------- 143 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhc-C--c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHh-------
Confidence 999974 233579999998754321 1 1 12457889999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++++++ .|+|++|||++++.++|||+
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQG----------KAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999997765 59999999999999999988
No 122
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.3e-50 Score=381.39 Aligned_cols=222 Identities=27% Similarity=0.408 Sum_probs=189.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.... .....+.++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE-PDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCC-HHHhhccce
Confidence 47899999999889999999999999999999999999999999999995 799999999999875432 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCC------CCHHHHHHHHHHHHHHcCCc-ccccCCCC-CCChHHHHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSK------MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALARSI 241 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~------~~~~~~~~~v~~~L~~~gL~-~~~~~~~~-~LSGGqrQRVaIArAL 241 (382)
+|+||++.+|+.+|+.||+.+....... ....+..+++.++++.+|+. ...++.+. +|||||||||+|||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 9999999999999999999875432111 12234456788999999997 56788887 5999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh-hchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~-aDrv~~~~~~~ 320 (382)
+. +|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+ ||++
T Consensus 160 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~vsH~~~~~~~~~~d~i------- 215 (243)
T TIGR01978 160 LL-------EPKLAILDEIDSGLDIDALKIVAEGINRLREPD----------RSFLIITHYQRLLNYIKPDYV------- 215 (243)
T ss_pred hc-------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------cEEEEEEecHHHHHhhcCCeE-------
Confidence 97 699999999999999999999999999997765 5999999999999998 7887
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 -----------------------~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 216 -----------------------HVLLDGRIVKSGDVELAK 233 (243)
T ss_pred -----------------------EEEeCCEEEEecCHHHhc
Confidence 999999999999776543
No 123
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-50 Score=385.84 Aligned_cols=212 Identities=30% Similarity=0.541 Sum_probs=188.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..+++
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-------~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-------GAERG 73 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-------CCcEE
Confidence 58999999999888899999999999999999999999999999999999999999999999986421 12589
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+||.||+.++... .+....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~------- 145 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQL-AGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAA------- 145 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc-------
Confidence 999999999889999999876432 223444455678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|+++.++ | .|+|++|||++++..+|||+
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tviivsH~~~~~~~~~d~i---------------- 199 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG----------KQVLLITHDIEEAVFMATEL---------------- 199 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999653 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEe--CCeEEEEecc
Q 016804 330 AVAPDKEVFFIYRLIFLY--EGKIVWQGMT 357 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~--~G~i~~~g~~ 357 (382)
++|+ +|++++.++.
T Consensus 200 --------------~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 200 --------------VLLSPGPGRVVERLPL 215 (255)
T ss_pred --------------EEEeCCCcEEEEEecC
Confidence 8898 5999988754
No 124
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-51 Score=379.79 Aligned_cols=232 Identities=30% Similarity=0.500 Sum_probs=202.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+|++++||+..||..++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.++|+|+.... ...+.+..|
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p-~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP-PHERARLGI 80 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCC-HHHHHhCCe
Confidence 5799999999999999999999999999999999999999999999999999999999999999998864 444556679
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHc-CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~-gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
+||||...+|+.+||+||+..+.+.... ++.....++++.+.| .|.+..+++..+|||||||.+||||||+.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~----- 153 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS----- 153 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc-----
Confidence 9999999999999999999988654332 111122256677777 36788999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||.||-|.-.+++++.|+++++++. +||++|.++...+.+++||.
T Consensus 154 --~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g---------~tIlLVEQn~~~Al~iaDr~--------------- 207 (237)
T COG0410 154 --RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG---------MTILLVEQNARFALEIADRG--------------- 207 (237)
T ss_pred --CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC---------cEEEEEeccHHHHHHhhCEE---------------
Confidence 6999999999999999999999999999997742 69999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|.+|+|+++|+.+++.. ++.+.+.+
T Consensus 208 ---------------yvle~Griv~~G~~~eL~~--~~~v~~~y 234 (237)
T COG0410 208 ---------------YVLENGRIVLSGTAAELLA--DPDVREAY 234 (237)
T ss_pred ---------------EEEeCCEEEEecCHHHHhc--CHHHHHHh
Confidence 8899999999998888764 34444433
No 125
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-50 Score=386.14 Aligned_cols=238 Identities=31% Similarity=0.475 Sum_probs=199.5
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~ 162 (382)
.+++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.......
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 34579999999999988999999999999999999999999999999999999975 8999999999875311111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCC-CCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaI 237 (382)
...+.+|+|+||++.+|+. |+.||+.++...+.. ....+..+++.++++.+|+.+ ..++.+.+||||||||++|
T Consensus 96 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred HHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 1123369999999999984 999999886532211 123344567888999999953 4678899999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++|||++++..+|||+
T Consensus 175 aral~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~----------~tiiivtH~~~~~~~~~d~v---- 232 (267)
T PRK14235 175 ARAIAV-------SPEVILMDEPCSALDPIATAKVEELIDELRQ-N----------YTIVIVTHSMQQAARVSQRT---- 232 (267)
T ss_pred HHHHHc-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-C----------CeEEEEEcCHHHHHhhCCEE----
Confidence 999997 6999999999999999999999999999965 4 49999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+.+|+.+
T Consensus 233 --------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (267)
T PRK14235 233 --------------------------AFFHLGNLVEVGDTEKMFTNPDDPRTQDYITG 264 (267)
T ss_pred --------------------------EEEECCEEEEeCCHHHHHhCCCCHHHHHHhhc
Confidence 999999999999888875 3456677776654
No 126
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-50 Score=381.66 Aligned_cols=236 Identities=26% Similarity=0.421 Sum_probs=196.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CC---CccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--AP---DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p---~sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|+++|+++.........
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4799999999999888999999999999999999999999999999999995 46 599999999987432111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+++|+||++.+|+ +|++||+.++.............+.+.++++.+++. +..++.+.+|||||||||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 1336999999999997 799999988643221112333456678889999874 45688999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++|||++++.++|||+
T Consensus 163 l~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sH~~~~~~~~~d~i------- 217 (252)
T PRK14239 163 LAT-------SPKIILLDEPTSALDPISAGKIEETLLGLKD-D----------YTMLLVTRSMQQASRISDRT------- 217 (252)
T ss_pred Hhc-------CCCEEEEcCCccccCHHHHHHHHHHHHHHhh-C----------CeEEEEECCHHHHHHhCCEE-------
Confidence 997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+..++. .+.++.+.+++.+
T Consensus 218 -----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14239 218 -----------------------GFFLDGDLIEYNDTKQMFMNPKHKETEDYISG 249 (252)
T ss_pred -----------------------EEEECCEEEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 999999999999888875 3455666666543
No 127
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-50 Score=390.60 Aligned_cols=221 Identities=35% Similarity=0.536 Sum_probs=191.9
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
||+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++......... +.+|
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~-~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI-RKLV 79 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH-Hhhe
Confidence 589999999995 56799999999999999999999999999999999999999999999999987543221222 2369
Q ss_pred EEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 170 GLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 170 g~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||+||++. .+...|++||+.+..... +.+..+..+++.++++.+||.+..++++.+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~----- 153 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM----- 153 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc-----
Confidence 99999985 355589999998865322 34555666778899999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|+||||||||+|||+.++..+.++|++++++| .|+|++|||++++. .|||+
T Consensus 154 --~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~til~~tH~~~~~~-~~d~v--------------- 205 (274)
T PRK13644 154 --EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG----------KTIVYITHNLEELH-DADRI--------------- 205 (274)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHh-hCCEE---------------
Confidence 699999999999999999999999999998766 59999999999985 58877
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 206 ---------------~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 206 ---------------IVMDRGKIVLEGEPENVL 223 (274)
T ss_pred ---------------EEEECCEEEEECCHHHHh
Confidence 999999999999887764
No 128
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.7e-51 Score=375.37 Aligned_cols=201 Identities=40% Similarity=0.672 Sum_probs=174.4
Q ss_pred EEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 93 DCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 93 ~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ... .+.+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i~ 78 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS-LKE-LRRKVG 78 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC-HHH-HHhhce
Confidence 47899999987 78999999999999999999999999999999999999999999999999875431 111 223699
Q ss_pred EEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+||++. .++.+|+.||+.+.... .+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~------ 151 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLEN-LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM------ 151 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc------
Confidence 9999985 35568999999875432 223344445678889999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.+.|+++++++ .|+|++|||++++..+||++
T Consensus 152 -~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tvi~~sH~~~~~~~~~d~i 204 (211)
T cd03225 152 -DPDILLLDEPTAGLDPAGRRELLELLKKLKAEG----------KTIIIVTHDLDLLLELADRV 204 (211)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999998765 59999999999999999988
No 129
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.6e-51 Score=410.90 Aligned_cols=232 Identities=31% Similarity=0.497 Sum_probs=201.0
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE----ECCCCCChh--hhccce
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRAGLISDE--EISGLR 168 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~----~i~~~~~~~--~~~~~~ 168 (382)
.++.++||...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++....... ..++.+
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45677888888999999999999999999999999999999999999999999999997 333221111 112246
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|+||||++.+|+++||+||+.+++.. .+.++.+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~-~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~----- 181 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM-QGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAM----- 181 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 99999999999999999999987632 234555666788999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|+||||||||++||+.++.++++.|.+++++ + +|+|+||||++++.++|||+
T Consensus 182 --~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~----------~TII~iTHdl~e~~~l~DrI-------------- 235 (382)
T TIGR03415 182 --DADILLMDEPFSALDPLIRTQLQDELLELQAKLN----------KTIIFVSHDLDEALKIGNRI-------------- 235 (382)
T ss_pred --CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999875 4 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.+.++..|..+
T Consensus 236 ----------------~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~~~ 267 (382)
T TIGR03415 236 ----------------AIMEGGRIIQHGTPEEIVLNPANDYVADFVAH 267 (382)
T ss_pred ----------------EEEECCEEEEecCHHHHhhCcchHHHHHHhcc
Confidence 999999999999888875 4556788888764
No 130
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-50 Score=389.66 Aligned_cols=223 Identities=35% Similarity=0.613 Sum_probs=192.4
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
||+++||+++|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 588999999996 4679999999999999999999999999999999999999999999999998742111111123369
Q ss_pred EEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 170 GLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 170 g~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|+||++. +++ .||.||+.++.... +...++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~-~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~---- 154 (275)
T PRK13639 81 GIVFQNPDDQLFA-PTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM---- 154 (275)
T ss_pred EEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhc----
Confidence 99999973 554 69999998764322 23445556678899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|+++.+++ .|||++|||++++.++|||+
T Consensus 155 ---~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~----------~til~vtH~~~~~~~~~d~i-------------- 207 (275)
T PRK13639 155 ---KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG----------ITIIISTHDVDLVPVYADKV-------------- 207 (275)
T ss_pred ---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEE--------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 208 ----------------~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 208 ----------------YVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred ----------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998887653
No 131
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-50 Score=379.56 Aligned_cols=217 Identities=31% Similarity=0.498 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP-HERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH-HHHHHhCeEE
Confidence 578999999998899999999999999999999999999999999999999999999999998754322 2212336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcC-CcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~g-L~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
+||++.+|+.+|+.+|+.++..... .. ..+.+.++++.++ +.+..++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------- 148 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALP-RR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT------- 148 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcC-cc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999998999999987653221 11 1234567788886 5777899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|.+++++ + .|+|++||+++++..+||++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v---------------- 202 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG----------MAILLVEQYLDFARELADRY---------------- 202 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCC----------cEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999875 4 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+.+++
T Consensus 203 --------------~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 203 --------------YVMERGRVVASGAGDEL 219 (230)
T ss_pred --------------EEEECCEEEEECCHHHc
Confidence 99999999999977776
No 132
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-50 Score=380.83 Aligned_cols=233 Identities=28% Similarity=0.463 Sum_probs=197.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~---p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+++++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..... .. .+.
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~-~~-~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV-VA-LRK 79 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH-HH-Hhh
Confidence 5899999999998899999999999999999999999999999999999984 799999999998754321 11 233
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCC-CHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHHh
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+|+|+||++.+|+ .|++||+.++....... ......+++.++++.+++. +..++.+.+|||||||||+|||||+
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 6999999999997 69999998764322111 2234455678899999995 4568889999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||+|||+.++..+.+.|+++.+ + .|+|++||+++++.++|||+
T Consensus 159 ~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~i--------- 211 (246)
T PRK14269 159 I-------KPKLLLLDEPTSALDPISSGVIEELLKELSH-N----------LSMIMVTHNMQQGKRVADYT--------- 211 (246)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-C----------CEEEEEecCHHHHHhhCcEE---------
Confidence 7 6999999999999999999999999999864 4 49999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++.. +.++.+.+|+.+
T Consensus 212 ---------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 243 (246)
T PRK14269 212 ---------------------AFFHLGELIEFGESKEFFENPKQEKTKAYLSG 243 (246)
T ss_pred ---------------------EEEECCEEEEECCHHHHHhCCCcHHHHHHhhh
Confidence 9999999999998888753 445677777664
No 133
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.9e-51 Score=437.31 Aligned_cols=281 Identities=30% Similarity=0.487 Sum_probs=234.3
Q ss_pred ccccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCC-CCCCCCCCCcccccccccC
Q 016804 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDG-FPATKFNDSSKSENVNTLF 82 (382)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (382)
++....+.|-..+..+.+|+..+.+.+ .-+...+...+|+..+...|+.+.+... .+-
T Consensus 407 lTlG~LiAf~~l~~~f~~pi~~L~~~~-----~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~---------------- 465 (709)
T COG2274 407 LTLGQLVAFNMLAGYFISPITRLSQLW-----TDFQQAKVALERLGDILDTPPEQEGDKTLIHL---------------- 465 (709)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCcccccccccccc----------------
Confidence 445666777777888899999998888 7888999999999999999976554442 110
Q ss_pred CCCCCCcceEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC
Q 016804 83 EPEDDGDVLIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 83 ~~~~~~~~~I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~ 160 (382)
+.-.++ |+++||+|+|+.. .+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.|+.....
T Consensus 466 -~~~~g~--I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 466 -PKLQGE--IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542 (709)
T ss_pred -cccCce--EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH
Confidence 222333 9999999999754 69999999999999999999999999999999999999999999999999876533
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCCh
Q 016804 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSG 229 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSG 229 (382)
.. . |++||||+|++.||.. |++||+.++.. ..+ .+++.++++..|++++..+.| ..|||
T Consensus 543 ~~-l-R~~ig~V~Q~~~Lf~g-SI~eNi~l~~p---~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSG 612 (709)
T COG2274 543 AS-L-RRQVGYVLQDPFLFSG-SIRENIALGNP---EAT----DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSG 612 (709)
T ss_pred HH-H-HhheeEEcccchhhcC-cHHHHHhcCCC---CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCH
Confidence 22 2 3479999999999975 99999998531 122 345677888889888877665 68999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
|||||++|||||++ +|+|||||||||+||+.+++.+.+.|.++.+. +|+|+|||+++.+..
T Consensus 613 GQrQrlalARaLl~-------~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~-----------~T~I~IaHRl~ti~~- 673 (709)
T COG2274 613 GQRQRLALARALLS-------KPKILLLDEATSALDPETEAIILQNLLQILQG-----------RTVIIIAHRLSTIRS- 673 (709)
T ss_pred HHHHHHHHHHHhcc-------CCCEEEEeCcccccCHhHHHHHHHHHHHHhcC-----------CeEEEEEccchHhhh-
Confidence 99999999999997 59999999999999999999999999999754 499999999999975
Q ss_pred hchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHH
Q 016804 310 VDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPI 367 (382)
Q Consensus 310 aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~ 367 (382)
|||| +||++|||+++|+.+|+......+
T Consensus 674 adrI------------------------------iVl~~Gkiv~~gs~~ell~~~g~y 701 (709)
T COG2274 674 ADRI------------------------------IVLDQGKIVEQGSHEELLAQGGLY 701 (709)
T ss_pred ccEE------------------------------EEccCCceeccCCHHHHHHhcChH
Confidence 6655 999999999999877777654333
No 134
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-50 Score=388.43 Aligned_cols=220 Identities=35% Similarity=0.594 Sum_probs=193.0
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+|+++||+++|+ .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ..... +.++
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~-~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE-NIREV-RKFV 80 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC-CHHHH-Hhhe
Confidence 689999999995 46799999999999999999999999999999999999999999999999987542 12222 2369
Q ss_pred EEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 170 GLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 170 g~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|+||++. ++ ..||.||+.++... .+...+...+++.++++.+||.+..++.+.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~-~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~---- 154 (277)
T PRK13652 81 GLVFQNPDDQIF-SPTVEQDIAFGPIN-LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM---- 154 (277)
T ss_pred EEEecCcccccc-cccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc----
Confidence 99999974 45 57999999876532 234555666778899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|++++++ + .|+|++||+++++.++|||+
T Consensus 155 ---~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvli~tH~~~~~~~~~drv------------- 208 (277)
T PRK13652 155 ---EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG----------MTVIFSTHQLDLVPEMADYI------------- 208 (277)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 209 -----------------~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 209 -----------------YVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred -----------------EEEECCeEEEECCHHHHh
Confidence 999999999999887764
No 135
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.8e-50 Score=384.95 Aligned_cols=235 Identities=31% Similarity=0.503 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCC---Chhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLI---SDEE 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~---~~~~ 163 (382)
++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.... ....
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 4799999999999899999999999999999999999999999999999999987 499999999864321 0111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcC-------CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
..+.+++|+||++.+|+.+|++||+.++..... ....++..+++.++++.+|+.+..++.+.+|||||||||+
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 113369999999999998999999987542100 1112334567889999999998899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
|||||+. +|++|||||||+|||+.++..+.++|+++.++ | .|+|++|||++++.++|||+
T Consensus 163 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tvii~tH~~~~~~~~~d~i-- 223 (262)
T PRK09984 163 IARALMQ-------QAKVILADEPIASLDPESARIVMDTLRDINQNDG----------ITVVVTLHQVDYALRYCERI-- 223 (262)
T ss_pred HHHHHhc-------CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE--
Confidence 9999997 69999999999999999999999999999764 5 59999999999999999988
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.+.+++.+
T Consensus 224 ----------------------------~~l~~g~i~~~g~~~~~~---~~~~~~~~~~ 251 (262)
T PRK09984 224 ----------------------------VALRQGHVFYDGSSQQFD---NERFDHLYRS 251 (262)
T ss_pred ----------------------------EEEECCEEEEeCCHHHhc---cHHHHHHHhh
Confidence 999999999999887762 2445555543
No 136
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-50 Score=379.88 Aligned_cols=235 Identities=29% Similarity=0.493 Sum_probs=197.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.|+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 48999999999888899999999999999999999999999999999999863 7999999999875311111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+|+|+||++.+|+ +|+++|+.+..........++.++++.++++.+++. +..++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 336999999999998 899999988653221122344566788889999874 456888999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||++||+.++..+.++|+++.+ + .|+|++|||++.+.++|||+
T Consensus 162 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~v-------- 215 (250)
T PRK14240 162 AV-------EPEVLLMDEPTSALDPISTLKIEELIQELKK-D----------YTIVIVTHNMQQASRISDKT-------- 215 (250)
T ss_pred hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEEeCHHHHHhhCCEE--------
Confidence 97 6999999999999999999999999999954 4 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.++.+.+++.+
T Consensus 216 ----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14240 216 ----------------------AFFLNGEIVEFGDTVDLFTNPKDKRTEDYITG 247 (250)
T ss_pred ----------------------EEEECCEEEEeCCHHHHHhCCCChHHHHhhcc
Confidence 999999999999888765 4466777777665
No 137
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-50 Score=380.01 Aligned_cols=236 Identities=30% Similarity=0.500 Sum_probs=197.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 46999999999998899999999999999999999999999999999999997 4899999999986431111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+..++|++|++.+|+ .|++||+.++.........+...+++.++++.+++. ...++.+.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 83 LRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 2336999999999987 799999987643221122333456678899999984 45688999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||++||+.++..+.+.|+++.+ + .|+|++||+++++.++|||+
T Consensus 162 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiiiisH~~~~~~~~~d~i------- 216 (251)
T PRK14251 162 LAV-------RPKVVLLDEPTSALDPISSSEIEETLMELKH-Q----------YTFIMVTHNLQQAGRISDQT------- 216 (251)
T ss_pred Hhc-------CCCEEEecCCCccCCHHHHHHHHHHHHHHHc-C----------CeEEEEECCHHHHHhhcCEE-------
Confidence 997 6999999999999999999999999999964 3 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.++.+..|+..
T Consensus 217 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14251 217 -----------------------AFLMNGDLIEAGPTEEMFIAPKKQITSDYLNG 248 (251)
T ss_pred -----------------------EEEECCEEEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 999999999999887765 4556677776653
No 138
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-50 Score=379.27 Aligned_cols=238 Identities=29% Similarity=0.495 Sum_probs=198.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-----sG~I~i~G~~i~~~~~~~~~ 164 (382)
.+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|+++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 3699999999999889999999999999999999999999999999999999874 89999999987532111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+|+|+||++.+|+.+|+.||+.+.........+++..+.+.++++.+++. +..++++.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 23369999999999998999999987643221112334455667777777763 45688899999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||++||+.++..+.+.|+++++ + .|+|++||+++++..+|||+
T Consensus 163 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i------- 217 (252)
T PRK14272 163 LAV-------EPEILLMDEPTSALDPASTARIEDLMTDLKK-V----------TTIIIVTHNMHQAARVSDTT------- 217 (252)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEE-------
Confidence 997 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++|++++.|+++++. .+.++....++.|.
T Consensus 218 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (252)
T PRK14272 218 -----------------------SFFLVGDLVEHGPTDQLFTNPRDERTEAYVSGR 250 (252)
T ss_pred -----------------------EEEECCEEEEeCCHHHHHhCcCcHHHHHHHhcc
Confidence 999999999999888875 34567777777653
No 139
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-50 Score=372.59 Aligned_cols=210 Identities=39% Similarity=0.625 Sum_probs=182.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+.+++|
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~---~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-P---ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-H---hHccEEE
Confidence 47899999998764 3999999999999999999999999999999999999999999999875431 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|++||+.+........ .++.++++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~-------~ 146 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVR-------D 146 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998754211111 22345568899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||++||+.++..+.++|++++++ + .|+|++|||++++..+|||+
T Consensus 147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~i----------------- 199 (211)
T cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETK----------MTVLMVTHQPEDAKRLAQRV----------------- 199 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHhhhCEE-----------------
Confidence 9999999999999999999999999999764 4 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEe
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 200 -------------~~l~~G~i~~~~ 211 (211)
T cd03298 200 -------------VFLDNGRIAAQG 211 (211)
T ss_pred -------------EEEECCEEeecC
Confidence 999999998654
No 140
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-50 Score=402.75 Aligned_cols=225 Identities=29% Similarity=0.447 Sum_probs=192.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~~~~~~ 168 (382)
||++ ||+|+|+++.+ |+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...... ....+++
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 5788 99999987643 89999999999999999999999999999999999999999999986432110 0111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|+|+||++.+|+++||+||+.++.. ....+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~----- 145 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT----- 145 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc-----
Confidence 9999999999999999999988642 1124567889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+.++..+.+.|+++.++ + .|+|+||||++++..+|||+
T Consensus 146 --~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tii~vTHd~~~~~~~~d~i-------------- 199 (352)
T PRK11144 146 --APELLLMDEPLASLDLPRKRELLPYLERLAREIN----------IPILYVSHSLDEILRLADRV-------------- 199 (352)
T ss_pred --CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEecCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHH
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 372 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 372 (382)
++|++|++++.|+++++.. +.+..+..|.
T Consensus 200 ----------------~~l~~G~i~~~g~~~~i~~~p~~~~~~~~~ 229 (352)
T PRK11144 200 ----------------VVLEQGKVKAFGPLEEVWASSAMRPWLPKE 229 (352)
T ss_pred ----------------EEEeCCEEEEecCHHHHHhCcchhhhhccc
Confidence 9999999999998888753 3334444443
No 141
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-50 Score=389.52 Aligned_cols=221 Identities=31% Similarity=0.535 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~-~~~~~-~~ 81 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE-TVWDV-RR 81 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC-cHHHH-hh
Confidence 57999999999974 5699999999999999999999999999999999999999999999999987543 22222 33
Q ss_pred eEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 168 RIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 168 ~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
+|||+||++. +++..||.||+.++.... +...++..+++.++++.+||+++.++++.+|||||||||+|||||+.
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~--- 157 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL--- 157 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc---
Confidence 6999999984 666689999998865322 34455566778999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|+||||||||+|||+.++..+.++|++++++ + .|||++|||++++.. |||+
T Consensus 158 ----~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~----------~tilivsH~~~~~~~-~d~i------------ 210 (279)
T PRK13635 158 ----QPDIIILDEATSMLDPRGRREVLETVRQLKEQKG----------ITVLSITHDLDEAAQ-ADRV------------ 210 (279)
T ss_pred ----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC----------CEEEEEecCHHHHHc-CCEE------------
Confidence 69999999999999999999999999999876 4 599999999999874 8877
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 211 ------------------~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 211 ------------------IVMNKGEILEEGTPEEIF 228 (279)
T ss_pred ------------------EEEECCEEEEECCHHHHh
Confidence 999999999999877654
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-50 Score=386.03 Aligned_cols=225 Identities=29% Similarity=0.442 Sum_probs=194.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
..+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~ 82 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYA-SKEV-ARR 82 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCC-HHHH-hhh
Confidence 45799999999999889999999999999999999999999999999999999999999999999875422 2222 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
|+|+||++.+|+.+|++||+.++...... ...+...+.+.++++.+||.+..++++.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~-- 160 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ-- 160 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc--
Confidence 99999999999889999999875311110 1122334567889999999988999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++|||++++.++|||+
T Consensus 161 -----~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~----------~tiii~tH~~~~~~~~~d~i----------- 214 (265)
T PRK10253 161 -----ETAIMLLDEPTTWLDISHQIDLLELLSELNREKG----------YTLAAVLHDLNQACRYASHL----------- 214 (265)
T ss_pred -----CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999764 4 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|++.++..
T Consensus 215 -------------------~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 215 -------------------IALREGKIVAQGAPKEIVT 233 (265)
T ss_pred -------------------EEEECCEEEEeCCHHHHhh
Confidence 9999999999998777653
No 143
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=8.4e-50 Score=383.88 Aligned_cols=237 Identities=29% Similarity=0.456 Sum_probs=203.5
Q ss_pred eEEEEeEEEEeC---------CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh
Q 016804 91 LIDCRNVYKSFG---------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 91 ~I~~~nvs~~yg---------~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
+|+++||+|+|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 699999999997 47899999999999999999999999999999999999999999999999987543221
Q ss_pred h-hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHH
Q 016804 162 E-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 162 ~-~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaI 237 (382)
. ...+.+++|+||++ .+++..|+.+|+.+...........+..+.+.++++.+|+. ...++.+.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 1 11133699999998 46677899999976543222233444456788999999997 57899999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
||||+. +|++|||||||+|||+.++..+.+.|++++++ + .|+|++||+++++.++||++
T Consensus 163 aral~~-------~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tiiivsH~~~~i~~~~d~i--- 222 (268)
T PRK10419 163 ARALAV-------EPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG----------TACLFITHDLRLVERFCQRV--- 222 (268)
T ss_pred HHHHhc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcC----------cEEEEEECCHHHHHHhCCEE---
Confidence 999997 69999999999999999999999999999775 4 59999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++....+++++.+...
T Consensus 223 ---------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 253 (268)
T PRK10419 223 ---------------------------MVMDNGQIVETQPVGDKLTFSSPAGRVLQNA 253 (268)
T ss_pred ---------------------------EEEECCEEeeeCChhhccCCCCHHHHHHHHh
Confidence 9999999999999888877778888887754
No 144
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=5.4e-50 Score=380.46 Aligned_cols=238 Identities=32% Similarity=0.495 Sum_probs=197.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE-----CCCCCChhh-
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-----RAGLISDEE- 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~-----i~~~~~~~~- 163 (382)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +........
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999999976 433211111
Q ss_pred -hccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 164 -ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 -~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+..|+|+||++. +++..|+.+|+.+..............+.+.++++.+++. ...++.+.+|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 11235999999975 4556799999976432111111223456778999999997 5889999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||+. +|++|||||||++||+.++..+.++|+++.++ + .|+|+|||+++++..+|||+
T Consensus 162 al~~-------~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~vsH~~~~~~~~~d~~----- 219 (253)
T TIGR02323 162 NLVT-------RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG----------LAVIIVTHDLGVARLLAQRL----- 219 (253)
T ss_pred HHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE-----
Confidence 9997 69999999999999999999999999998765 4 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.+++++.|+..
T Consensus 220 -------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~l~~ 251 (253)
T TIGR02323 220 -------------------------LVMQQGRVVESGLTDQVLDDPQHPYTQLLVSS 251 (253)
T ss_pred -------------------------EEEECCEEEEECCHHHHhcCCCCHHHHHHHHh
Confidence 9999999999998877653 456777777653
No 145
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-50 Score=378.42 Aligned_cols=234 Identities=30% Similarity=0.537 Sum_probs=196.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++..........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 69999999999988899999999999999999999999999999999999984 8999999999864311111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+++|+||++.+|+ .|++||+.+..........+..++.+.++++.+++.. ..++.+.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 336999999999998 8999999886532221223345566788899999853 47889999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.+.|+++.+ + .|+|++||+++++..+|||+
T Consensus 162 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tili~sH~~~~~~~~~d~i-------- 215 (250)
T PRK14262 162 AV-------EPEVILLDEPTSALDPIATQRIEKLLEELSE-N----------YTIVIVTHNIGQAIRIADYI-------- 215 (250)
T ss_pred hC-------CCCEEEEeCCccccCHHHHHHHHHHHHHHhc-C----------cEEEEEeCCHHHHHHhCCEE--------
Confidence 97 6999999999999999999999999999965 4 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. +.++....|..
T Consensus 216 ----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 246 (250)
T PRK14262 216 ----------------------AFMYRGELIEYGPTREIVERPKNKLTEEYLT 246 (250)
T ss_pred ----------------------EEEECCEEEEecCHHHHHhCCCChHHHHHhc
Confidence 9999999999998887653 34556666654
No 146
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-49 Score=382.85 Aligned_cols=238 Identities=26% Similarity=0.456 Sum_probs=199.3
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~ 162 (382)
..++|+++||+++|+++++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 3467999999999998899999999999999999999999999999999999996 58999999999874211111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIA 238 (382)
...+..|+|+||++.+|+ .||+||+.++..........+..+++.++++.+++. +..++++.+||||||||++||
T Consensus 97 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred HHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 112336999999999987 699999988653221123344566788899999985 457889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++..+|||+
T Consensus 176 ral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~i----- 232 (267)
T PRK14237 176 RAIAV-------KPDILLMDEPASALDPISTMQLEETMFELKK-N----------YTIIIVTHNMQQAARASDYT----- 232 (267)
T ss_pred HHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEecCHHHHHHhcCEE-----
Confidence 99997 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +....+.+++.+
T Consensus 233 -------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (267)
T PRK14237 233 -------------------------AFFYLGDLIEYDKTRNIFTNPKLQSTNDYVSG 264 (267)
T ss_pred -------------------------EEEECCEEEEeCCHHHHhcCCCcHHHHHhhhh
Confidence 9999999999998888753 345556666544
No 147
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-50 Score=379.04 Aligned_cols=236 Identities=28% Similarity=0.430 Sum_probs=198.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-----sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.........
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4699999999999888999999999999999999999999999999999999997 69999999986432111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+..++|+||++.+|+. |++||+.+..........++..+.+.++++.+++. +..++.+.+|||||||||+||||
T Consensus 83 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred hhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 23469999999999984 99999988653221112233455677788888874 45788999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++. ++ .|||++||+++++.++||++
T Consensus 162 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~----------~tilivsh~~~~~~~~~d~i------- 216 (251)
T PRK14249 162 LAI-------EPEVILMDEPCSALDPVSTMRIEELMQELK-QN----------YTIAIVTHNMQQAARASDWT------- 216 (251)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cC----------CEEEEEeCCHHHHHhhCCEE-------
Confidence 997 699999999999999999999999999995 44 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.++.+.+|+.+
T Consensus 217 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14249 217 -----------------------GFLLTGDLVEYGRTGEIFSRPRDKRTEDYITG 248 (251)
T ss_pred -----------------------EEEeCCeEEEeCCHHHHHhCCCChHHHHHHhc
Confidence 999999999999888865 4567778887765
No 148
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-50 Score=376.82 Aligned_cols=218 Identities=32% Similarity=0.557 Sum_probs=189.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+++|++.. .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+.+++
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~---~~~~i~ 74 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-P---SRRPVS 74 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-h---hhccEE
Confidence 589999999998644 4999999999999999999999999999999999999999999999865321 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+|+.||+.++....... .+...+++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 146 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVR------- 146 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998754211111 22345668899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++|||++++..+|||+
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i---------------- 200 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ----------LTLLMVSHSLEDAARIAPRS---------------- 200 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999764 4 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 201 --------------~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 201 --------------LVVADGRIAWDGPTDELLS 219 (232)
T ss_pred --------------EEEECCEEEEeCCHHHHHh
Confidence 9999999999998777764
No 149
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.1e-50 Score=375.70 Aligned_cols=197 Identities=37% Similarity=0.601 Sum_probs=171.3
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEE
Q 016804 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (382)
Q Consensus 93 ~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V 172 (382)
+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. . .+.+++|+
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~--~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----K--ERKRIGYV 73 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----H--HHhheEEe
Confidence 3689999998888999999999999999999999999999999999999999999999998642 1 12369999
Q ss_pred ecCCCCC--CCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 173 FQSAALF--DSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 173 ~Q~~~l~--~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
||++.++ ..+||+||+.+....... ...+...+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~---- 149 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQ---- 149 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHc----
Confidence 9998763 237999999875421111 1123345678899999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.+.|+++++++ .|+|++|||++++.++|||+
T Consensus 150 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~sH~~~~~~~~~d~i 202 (213)
T cd03235 150 ---DPDLLLLDEPFAGVDPKTQEDIYELLRELRREG----------MTILVVTHDLGLVLEYFDRV 202 (213)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE
Confidence 699999999999999999999999999998765 59999999999999999988
No 150
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-50 Score=385.12 Aligned_cols=209 Identities=36% Similarity=0.541 Sum_probs=186.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+.+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-------~~~~ 82 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE-------ARED 82 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH-------hhCc
Confidence 366999999999998889999999999999999999999999999999999999999999999986421 1236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
++|+||++.+|+.+||+||+.++.. . ...+++.++++.+||.+..++++.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~-----~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~----- 150 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK-----G--QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH----- 150 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc-----c--hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 9999999999998999999987531 1 123567889999999988999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++|||++++..+|||+
T Consensus 151 --~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tviivsHd~~~~~~~~d~i-------------- 204 (257)
T PRK11247 151 --RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG----------FTVLLVTHDVSEAVAMADRV-------------- 204 (257)
T ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999654 4 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTH 358 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~ 358 (382)
++|++|+++.+++..
T Consensus 205 ----------------~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 205 ----------------LLIEEGKIGLDLTVD 219 (257)
T ss_pred ----------------EEEECCEEEeecccc
Confidence 999999999988543
No 151
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-50 Score=426.56 Aligned_cols=240 Identities=25% Similarity=0.441 Sum_probs=206.7
Q ss_pred CcceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 88 GDVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~-----------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
..++|+++||+++|+. +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.
T Consensus 310 ~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 310 GEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred CCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 3578999999999961 47999999999999999999999999999999999999999999999999876
Q ss_pred CCCChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHH
Q 016804 157 GLISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMK 232 (382)
Q Consensus 157 ~~~~~~-~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqr 232 (382)
...... ...+.+|+||||++ .+++.+||.+|+.+.+..+......+..+++.++|+.+||. +..+++|++||||||
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 432111 11233699999998 58889999999988653222123444567788999999996 678999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||+|||||+. +|+||||||||++||+.++.+++++|++++++ | .|||+||||++++.++||
T Consensus 470 QRv~iAraL~~-------~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g----------~tvi~isHdl~~v~~~~d 532 (623)
T PRK10261 470 QRICIARALAL-------NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG----------IAYLFISHDMAVVERISH 532 (623)
T ss_pred HHHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCC
Confidence 99999999997 69999999999999999999999999999876 4 599999999999999999
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
|| ++|++|+|++.|++.++. .+.+++++.++..
T Consensus 533 ri------------------------------~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 533 RV------------------------------AVMYLGQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred EE------------------------------EEEECCEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 88 999999999999988875 4678999888764
No 152
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-50 Score=386.69 Aligned_cols=222 Identities=33% Similarity=0.523 Sum_probs=190.6
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhh
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~ 163 (382)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998754211 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArA 240 (382)
..+.+|+|+||++ .+|+ .|++||+.++.... +...++..+.+.++++.+||. ...++++.+||||||||++||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1233699999997 4665 69999998764322 234455566788899999997 57799999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||++||+.++..+.+.|+++++++ .|||++|||++++..+||++
T Consensus 160 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiiivsH~~~~~~~~~d~i------- 215 (280)
T PRK13649 160 LAM-------EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG----------MTIVLVTHLMDDVANYADFV------- 215 (280)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeccHHHHHHhCCEE-------
Confidence 997 699999999999999999999999999997765 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 -----------------------~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 -----------------------YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred -----------------------EEEECCEEEEeCCHHHHh
Confidence 999999999999877764
No 153
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=378.00 Aligned_cols=238 Identities=28% Similarity=0.482 Sum_probs=199.1
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++........
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 3579999999999988999999999999999999999999999999999999763 48999999998754211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+..|+|+||++.+|+ .||+||+.+.............++.+.++++.+++. ...++.+.+||||||||++|||
T Consensus 84 ~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhceEEEEecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 12336999999999998 499999998653222122334456678889998874 3468899999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|+++||||||+|||+.++..+.++|+++.++ .|+|++||+++++..+|||+
T Consensus 163 al~~-------~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-----------~tvii~sh~~~~~~~~~d~v------ 218 (253)
T PRK14261 163 TLAV-------NPEVILMDEPCSALDPIATAKIEDLIEDLKKE-----------YTVIIVTHNMQQAARVSDYT------ 218 (253)
T ss_pred HHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhhC-----------ceEEEEEcCHHHHHhhCCEE------
Confidence 9997 59999999999999999999999999999753 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++|++++.|+++++. .+.++..+.|..+.
T Consensus 219 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK14261 219 ------------------------GFMYLGKLIEFDKTTQIFENPHEELTENYITGR 251 (253)
T ss_pred ------------------------EEEECCEEEEcCCHHHHHhCCCcHHHHHHhccc
Confidence 999999999999888865 34567888777653
No 154
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-50 Score=385.22 Aligned_cols=223 Identities=34% Similarity=0.583 Sum_probs=192.7
Q ss_pred cceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
+++|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~-~~~~-~ 82 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN-LKEI-R 82 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC-HHHH-h
Confidence 46899999999995 467999999999999999999999999999999999999999999999999875321 1122 3
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 167 ~~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
.+|+|+||++. .|+.+|++||+.++... .....++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 83 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-- 159 (271)
T PRK13632 83 KKIGIIFQNPDNQFIGATVEDDIAFGLEN-KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL-- 159 (271)
T ss_pred cceEEEEeCHHHhcCcccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 36999999984 56678999999886532 223445556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||+|||+.++..++++|+++.+++. .|+|++||+++++. .||++
T Consensus 160 -----~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~---------~tiii~sH~~~~~~-~~d~v------------ 212 (271)
T PRK13632 160 -----NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRK---------KTLISITHDMDEAI-LADKV------------ 212 (271)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC---------cEEEEEEechhHHh-hCCEE------------
Confidence 6999999999999999999999999999977632 59999999999986 78877
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 213 ------------------~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 213 ------------------IVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred ------------------EEEECCEEEEecCHHHHh
Confidence 999999999999877754
No 155
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=383.31 Aligned_cols=238 Identities=29% Similarity=0.479 Sum_probs=197.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~ 162 (382)
+.++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 21 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred CceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 3568999999999998889999999999999999999999999999999999997 69999999999874211111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCC----cccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL----KGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL----~~~~~~~~~~LSGGqrQRVaIA 238 (382)
...+.+++|+||++.+|+ .|++||+.++............++.+.++++.+++ .+..++++.+||||||||++||
T Consensus 101 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence 112336999999999987 59999998865322111223334556777887754 4567889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++|||++++.++|||+
T Consensus 180 raL~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiivsH~~~~i~~~~d~i----- 236 (271)
T PRK14238 180 RCLAI-------EPDVILMDEPTSALDPISTLKVEELVQELKK-D----------YSIIIVTHNMQQAARISDKT----- 236 (271)
T ss_pred HHHHc-------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-C----------CEEEEEEcCHHHHHHhCCEE-----
Confidence 99997 6999999999999999999999999999965 4 49999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+.+++..
T Consensus 237 -------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 268 (271)
T PRK14238 237 -------------------------AFFLNGYVNEYDDTDKIFSNPSDKRTEDYITG 268 (271)
T ss_pred -------------------------EEEECCEEEEeCCHHHHHcCCCCHHHHHHHhh
Confidence 999999999999888875 3455666766653
No 156
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-49 Score=375.93 Aligned_cols=236 Identities=28% Similarity=0.459 Sum_probs=195.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~--p---~sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+.+ | ++|+|+++|+++.........
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 57999999999998889999999999999999999999999999999999975 5 599999999987431111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+++|+||++.+|+ .|+++|+.+..........+...+.+.++++.+++. +..++.+.+||||||||++||||
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lara 162 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARV 162 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHH
Confidence 2346999999999998 699999988643221112233345667788888763 45688999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++.++ .|+|++||+++++.++|||+
T Consensus 163 l~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~vsH~~~~~~~~~d~i------- 217 (252)
T PRK14255 163 LAV-------KPDVILLDEPTSALDPISSTQIENMLLELRDQ-----------YTIILVTHSMHQASRISDKT------- 217 (252)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHhC-----------CEEEEEECCHHHHHHhCCEE-------
Confidence 997 69999999999999999999999999999763 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.+....+|+.+
T Consensus 218 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14255 218 -----------------------AFFLTGNLIEFADTKQMFLNPKEKETEDYITG 249 (252)
T ss_pred -----------------------EEEECCEEEEeCCHHHHhcCCCChHHHHHhcc
Confidence 999999999999887765 3445566666654
No 157
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5.6e-50 Score=381.59 Aligned_cols=222 Identities=32% Similarity=0.447 Sum_probs=192.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+++|
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS-RRAR-ARRVAL 79 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCC-HHHH-hhheEE
Confidence 68999999999899999999999999999999999999999999999999999999999999875432 2221 235999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
++|++.+++.+||+||+.++.... ......+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ----- 154 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999998777899999998753111 011122334567889999999988999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|+++||||||+|||+.++..+.++|+++++++ .|+|++|||++++..+|||+
T Consensus 155 --~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i--------------- 207 (256)
T TIGR03873 155 --EPKLLLLDEPTNHLDVRAQLETLALVRELAATG----------VTVVAALHDLNLAASYCDHV--------------- 207 (256)
T ss_pred --CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE---------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+.+++..
T Consensus 208 ---------------~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 208 ---------------VVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred ---------------EEEeCCCEEEecCHHHhhC
Confidence 9999999999998777653
No 158
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-49 Score=383.52 Aligned_cols=235 Identities=31% Similarity=0.486 Sum_probs=197.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCC-CChh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGL-ISDE 162 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~-~~~~ 162 (382)
+++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... ....
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 467999999999998899999999999999999999999999999999999987 6999999999986421 1112
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIA 238 (382)
.. +.+|+|+||++.+|+ .||+||+.+..... +.. ....+++.++++.+++. +..++++.+||||||||++||
T Consensus 91 ~~-~~~i~~v~q~~~l~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 91 EV-RRRIGMVFQQPNPFP-KSIYENIAFGARIN-GYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred HH-hhceEEEccCCccch-hhHHHHHhhhhhhc-CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 22 236999999999998 59999998865322 222 23345667788888763 457889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.++|+++++ + .|+|++|||++++.++|||+
T Consensus 167 ral~~-------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiiivtH~~~~~~~~~d~i----- 223 (269)
T PRK14259 167 RTIAI-------EPEVILMDEPCSALDPISTLKIEETMHELKK-N----------FTIVIVTHNMQQAVRVSDMT----- 223 (269)
T ss_pred HHHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCEE-----
Confidence 99997 6999999999999999999999999999954 4 49999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeC-----------CeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYE-----------GKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~-----------G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++ |++++.|++.++. .+.++....++.+.
T Consensus 224 -------------------------~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
T PRK14259 224 -------------------------AFFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQDYISGK 267 (269)
T ss_pred -------------------------EEEeccccccccccccceEEEeCCHHHHHhCcCChHHHHHHhcc
Confidence 88886 6789999988875 45677777777653
No 159
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5e-50 Score=422.59 Aligned_cols=272 Identities=24% Similarity=0.343 Sum_probs=210.3
Q ss_pred HHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEe
Q 016804 17 KSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRN 96 (382)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~n 96 (382)
..++.++..+++.. .....+....+|+...+..|+....... . ..+.....-|+++|
T Consensus 298 ~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~~----------------~--~~~~~~~~~i~~~~ 354 (588)
T PRK11174 298 PEFYQPLRDLGTFY-----HAKAQAVGAAESLVTFLETPLAHPQQGE----------------K--ELASNDPVTIEAED 354 (588)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccCCCc----------------c--ccCCCCCceEEEEe
Confidence 34456666666555 5667788889999998877642111000 0 00000112399999
Q ss_pred EEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecC
Q 016804 97 VYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 97 vs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
|++.| +++++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|++||.++...... .. +.+|+||+|+
T Consensus 355 vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~-~l-r~~i~~v~Q~ 431 (588)
T PRK11174 355 LEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPE-SW-RKHLSWVGQN 431 (588)
T ss_pred eEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHH-HH-HhheEEecCC
Confidence 99765 5678999999999999999999999999999999999999 9999999999998775433 32 3369999999
Q ss_pred CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcC
Q 016804 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~ 244 (382)
+.+|+. |++|||.++. ...++ +++.++++.++++++.++.| ..||||||||++|||||++
T Consensus 432 ~~LF~~-TI~eNI~~g~---~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~- 502 (588)
T PRK11174 432 PQLPHG-TLRDNVLLGN---PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ- 502 (588)
T ss_pred CcCCCc-CHHHHhhcCC---CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc-
Confidence 999985 9999998852 12333 44667777777766554443 5799999999999999998
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+|||||||||+||+.+++.+++.|+++.++ +|+|+|||+++.+.. ||+|
T Consensus 503 ------~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~-----------~TvIiItHrl~~i~~-aD~I----------- 553 (588)
T PRK11174 503 ------PCQLLLLDEPTASLDAHSEQLVMQALNAASRR-----------QTTLMVTHQLEDLAQ-WDQI----------- 553 (588)
T ss_pred ------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCC-----------CEEEEEecChHHHHh-CCEE-----------
Confidence 59999999999999999999999999998643 499999999998865 6766
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|+|+++|+.+++... ++...+++
T Consensus 554 -------------------ivl~~G~i~e~G~~~eL~~~-~~~y~~l~ 581 (588)
T PRK11174 554 -------------------WVMQDGQIVQQGDYAELSQA-GGLFATLL 581 (588)
T ss_pred -------------------EEEeCCeEeecCCHHHHHhc-chHHHHHH
Confidence 99999999999976666543 34444443
No 160
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-49 Score=375.97 Aligned_cols=234 Identities=30% Similarity=0.503 Sum_probs=197.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++........ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~-~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD-L 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH-H
Confidence 58999999999988999999999999999999999999999999999999986 59999999998642111112 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+..++|+||++.+|+ .|+.||+.+..............+++.++++.+++. +..++++.+|||||||||+|||||
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 336999999999997 799999987643221112334456677889999874 456788999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.++|+++.++ .|||++||+++++..+|||+
T Consensus 161 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sh~~~~~~~~~d~i-------- 214 (249)
T PRK14253 161 AM-------EPDVILMDEPTSALDPIATHKIEELMEELKKN-----------YTIVIVTHSMQQARRISDRT-------- 214 (249)
T ss_pred Hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-----------CeEEEEecCHHHHHHhCCEE--------
Confidence 97 69999999999999999999999999999753 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+..++.+
T Consensus 215 ----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 246 (249)
T PRK14253 215 ----------------------AFFLMGELVEHDDTQVIFSNPKDDRTQGYVNG 246 (249)
T ss_pred ----------------------EEEECCEEEEeCCHHHHHcCCCChHHHHHhhc
Confidence 999999999999887765 3456777777665
No 161
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=7.2e-50 Score=399.23 Aligned_cols=215 Identities=32% Similarity=0.507 Sum_probs=187.3
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhhhccceEEEEe
Q 016804 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEISGLRIGLVF 173 (382)
Q Consensus 96 nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~~~~~~Ig~V~ 173 (382)
||+|+|+++. + ++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .....+.+|+|+|
T Consensus 4 ~l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 8999998766 4 9999999999999999999999999999999999999999999998753211 0011233699999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
|++.+|+++||+||+.++.... ...+..+++.++++.+||.++.++++.+|||||||||+|||||+. +|+
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~-------~p~ 151 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRA---RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLS-------SPR 151 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc-------CCC
Confidence 9999999999999999865321 223345568899999999999999999999999999999999997 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCC
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVA 332 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~ 332 (382)
+|||||||+|||+.++..+.+.|++++++ + .|+|++|||++++..+|||+
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tiiivtH~~~~~~~~~d~i------------------- 202 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFG----------IPILYVSHSLQEVLRLADRV------------------- 202 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-------------------
Confidence 99999999999999999999999999876 4 59999999999999999988
Q ss_pred CCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 333 PDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 333 ~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 203 -----------~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 203 -----------VVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred -----------EEEeCCEEEEECCHHHHhc
Confidence 9999999999998887653
No 162
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.1e-50 Score=415.46 Aligned_cols=224 Identities=24% Similarity=0.392 Sum_probs=196.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+|
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG-PKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHHHhCCE
Confidence 4799999999999889999999999999999999999999999999999999999999999999875321 222223369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
+|+||++.+++.+||+||+.++.... ...+..+.++++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--- 158 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF--- 158 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc---
Confidence 99999999999999999998864221 112334455678899999999988899999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+|||+
T Consensus 159 ----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tvii~sHd~~~~~~~~d~i------------- 211 (501)
T PRK10762 159 ----ESKVIIMDEPTDALTDTETESLFRVIRELKSQG----------RGIVYISHRLKEIFEICDDV------------- 211 (501)
T ss_pred ----CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 699999999999999999999999999997765 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|++.++.
T Consensus 212 -----------------~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 212 -----------------TVFRDGQFIAEREVADLT 229 (501)
T ss_pred -----------------EEEeCCEEEEecCcCcCC
Confidence 999999999999877653
No 163
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-49 Score=385.77 Aligned_cols=238 Identities=30% Similarity=0.495 Sum_probs=197.8
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~ 162 (382)
+.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.......
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5568999999999988889999999999999999999999999999999999864 49999999999864321111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIA 238 (382)
...+.+|+|+||++.+|+. ||.||+.++.......+....++++.++++.+++. +..++++.+|||||||||+||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 1123369999999999984 99999998653221112333456677889999873 567889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.+.|+++.+ + .|||++|||++++.++|||+
T Consensus 195 raL~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~----------~tvIivsH~~~~~~~~~d~i----- 251 (286)
T PRK14275 195 RTLAV-------EPEILLLDEPTSALDPKATAKIEDLIQELRG-S----------YTIMIVTHNMQQASRVSDYT----- 251 (286)
T ss_pred HHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEE-----
Confidence 99997 6999999999999999999999999999865 3 49999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++.. +.++....++.+
T Consensus 252 -------------------------~~L~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 283 (286)
T PRK14275 252 -------------------------MFFYEGVLVEHAPTAQLFTNPKDRMTEDYITG 283 (286)
T ss_pred -------------------------EEEECCEEEEeCCHHHHHhCCCcHHHHHHHHh
Confidence 9999999999998888753 445666666543
No 164
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-50 Score=386.64 Aligned_cols=222 Identities=32% Similarity=0.532 Sum_probs=193.3
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s---G~I~i~G~~i~~~~~~~~ 163 (382)
+.+|+++|++++|++ +++|+++||+|++||++||+||||||||||+++|+|+++|++ |+|+++|+++... ....
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~-~~~~ 81 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK-TVWD 81 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC-CHHH
Confidence 457999999999964 469999999999999999999999999999999999999998 8999999987532 1111
Q ss_pred hccceEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 164 ISGLRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
.+.+|||+||++. +++..||+||+.+.... .+.+.++..+++.++++.+||.++.++++.+||||||||++|||||+
T Consensus 82 -~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 82 -IREKVGIVFQNPDNQFVGATVGDDVAFGLEN-RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred -HHhheEEEEECHHHhhccCCHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 2336999999984 56678999999876432 23455666778899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
. +|++|||||||+|||+.++..+.++|++++++ | +|||++||+++++. .|||+
T Consensus 160 ~-------~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvli~tH~~~~~~-~~d~i-------- 213 (282)
T PRK13640 160 V-------EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN----------LTVISITHDIDEAN-MADQV-------- 213 (282)
T ss_pred c-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHH-hCCEE--------
Confidence 7 69999999999999999999999999999865 5 59999999999985 78877
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 214 ----------------------~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 214 ----------------------LVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred ----------------------EEEECCEEEEeCCHHHHh
Confidence 999999999999887764
No 165
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-49 Score=380.23 Aligned_cols=240 Identities=31% Similarity=0.479 Sum_probs=199.7
Q ss_pred CCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCC
Q 016804 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~ 160 (382)
++..++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.....
T Consensus 20 ~~~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 20 SDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCCCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 344568999999999998899999999999999999999999999999999999988 489999999998753111
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHH
Q 016804 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVa 236 (382)
.....+.+++|+||++.+|+. |++||+.+.........++..++.+.++++.+++. +..++.+.+|||||||||+
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 111123469999999999985 99999987643221112333456678889999985 3568889999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++.++|||+
T Consensus 179 laral~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~----------~tiiivtH~~~~~~~~~d~i--- 237 (272)
T PRK14236 179 IARAIAI-------EPEVLLLDEPTSALDPISTLKIEELITELKS-K----------YTIVIVTHNMQQAARVSDYT--- 237 (272)
T ss_pred HHHHHHC-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C----------CeEEEEeCCHHHHHhhCCEE---
Confidence 9999997 6999999999999999999999999999975 4 49999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.++.+..|..+
T Consensus 238 ---------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 269 (272)
T PRK14236 238 ---------------------------AFMYMGKLVEYGDTDTLFTSPAKKQTEDYITG 269 (272)
T ss_pred ---------------------------EEEECCEEEecCCHHHHhcCCCcHHHHHHhcc
Confidence 9999999999998888653 456666666554
No 166
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-50 Score=415.64 Aligned_cols=224 Identities=28% Similarity=0.434 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++|++++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+|
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~-~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCC-HHHHHHCCe
Confidence 5799999999999889999999999999999999999999999999999999999999999999875432 222223369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhc---CC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYEN---SK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~---~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
+||||++.+++.+||+||+.++.... .+ .+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998754211 11 1233455678899999999988999999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|++|||||||+|||+.++..+.++|++++++| +|||+||||++++..+|||+
T Consensus 163 -------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivsHd~~~~~~~~d~v---------- 215 (510)
T PRK09700 163 -------DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG----------TAIVYISHKLAEIRRICDRY---------- 215 (510)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE----------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 --------------------~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 216 --------------------TVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred --------------------EEEECCEEeeecchhhCC
Confidence 999999999999887764
No 167
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-49 Score=372.78 Aligned_cols=229 Identities=38% Similarity=0.595 Sum_probs=198.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+..++|
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~---~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-P---HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-h---hhcceEE
Confidence 46899999999889999999999999999999999999999999999999999999999999875421 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
++|++.+|+.+|+.+|+.+..... +.......+++.++++.+|+.++.++.+.+||+|||||++|||||+. +
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~-------~ 148 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN-------E 148 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998765322 23344556677889999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|+++||||||+|||+.++..+.++|++++++ + .|+|++||+++++.++|||+
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~----------~tiii~sh~~~~~~~~~d~i----------------- 201 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELG----------ITFVFVTHDQEEALTMSDRI----------------- 201 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEE-----------------
Confidence 9999999999999999999999999999875 5 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHH
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 372 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 372 (382)
++|++|++++.|+..++.. ..++...+|.
T Consensus 202 -------------~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~ 231 (232)
T cd03300 202 -------------AVMNKGKIQQIGTPEEIYEEPANRFVADFI 231 (232)
T ss_pred -------------EEEECCEEEecCCHHHHHhCCchHHHHHhc
Confidence 9999999999997766643 2345555553
No 168
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-50 Score=415.10 Aligned_cols=224 Identities=25% Similarity=0.394 Sum_probs=196.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
++|+++||+|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... ......+.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~-~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS-NIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC-CHHHHHHC
Confidence 579999999999988999999999999999999999999999999999999996 899999999987542 22212234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+||||||++.+|+.+||+||+.++...+ ...+.++..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~-- 160 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK-- 160 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc--
Confidence 6999999999999999999998865321 112334455678899999999988999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||++||+.++..+.++|++++++| .|+|++|||++++..+|||+
T Consensus 161 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tvi~~tH~~~~~~~~~d~v------------ 213 (506)
T PRK13549 161 -----QARLLILDEPTASLTESETAVLLDIIRDLKAHG----------IACIYISHKLNEVKAISDTI------------ 213 (506)
T ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCcHHHHHHhcCEE------------
Confidence 699999999999999999999999999997765 59999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 214 ------------------~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 214 ------------------CVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred ------------------EEEECCEEeeecccccCC
Confidence 999999999999887764
No 169
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-49 Score=369.17 Aligned_cols=210 Identities=35% Similarity=0.554 Sum_probs=181.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhhhccceE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~~~~~~I 169 (382)
+++ ||+|+|+++.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++..... .....+.++
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 445 99999998766 99999999 9999999999999999999999999999999999998642111 111113369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+.+|+.+|+.+..... .....++++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------ 148 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA------ 148 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc------
Confidence 99999999998899999998764221 233345667889999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||+|||+.+++.+.++|++++++ | .|+|++|||++++..+|||+
T Consensus 149 -~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i--------------- 202 (214)
T cd03297 149 -QPELLLLDEPFSALDRALRLQLLPELKQIKKNLN----------IPVIFVTHDLSEAEYLADRI--------------- 202 (214)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEecCHHHHHHhcCEE---------------
Confidence 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|+++++|
T Consensus 203 ---------------~~l~~G~i~~~g 214 (214)
T cd03297 203 ---------------VVMEDGRLQYIG 214 (214)
T ss_pred ---------------EEEECCEEEecC
Confidence 999999998765
No 170
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-49 Score=378.40 Aligned_cols=236 Identities=29% Similarity=0.456 Sum_probs=197.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.+|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 369999999999988899999999999999999999999999999999999985 589999999986421111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+|+|+||++.+|+ +|++||+.++........+.+..+++.++++.+++. +..++++.+|||||||||+||||
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 2336999999999998 899999987653222123344456678889999884 46788999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++..+|||+
T Consensus 165 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~i~~~~d~i------- 219 (259)
T PRK14260 165 LAI-------KPKVLLMDEPCSALDPIATMKVEELIHSLRS-E----------LTIAIVTHNMQQATRVSDFT------- 219 (259)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCeE-------
Confidence 997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEe-----CCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLY-----EGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~-----~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|+ +|++++.|++.++. .+.++.+.+++.+
T Consensus 220 -----------------------~~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (259)
T PRK14260 220 -----------------------AFFSTDESRIGQMVEFGVTTQIFSNPLDSRTRDYVSG 256 (259)
T ss_pred -----------------------EEEeccCCCCceEEEeCCHHHHhcCCCChHHHHhhhh
Confidence 8887 59999999888875 4556777777654
No 171
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-49 Score=380.94 Aligned_cols=236 Identities=28% Similarity=0.472 Sum_probs=200.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++........
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4689999999999989999999999999999999999999999999999999986 79999999998753211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIAr 239 (382)
.+.+|+|+||++.+|+ +|+++|+.++..........+..+.+.++++.+++.. ..++.+.+||||||||++|||
T Consensus 99 -~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 99 -FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred -HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 2336999999999998 7999999876432222344455566778899999964 467889999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||++||+.++..+.+.|+++.++ .|||++||+++++.++|||+
T Consensus 177 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-----------~tiiivsH~~~~~~~~~dri------ 232 (276)
T PRK14271 177 TLAV-------NPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-----------LTVIIVTHNLAQAARISDRA------ 232 (276)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHHhCCEE------
Confidence 9997 59999999999999999999999999999753 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.++...+|+.+
T Consensus 233 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK14271 233 ------------------------ALFFDGRLVEEGPTEQLFSSPKHAETARYVAG 264 (276)
T ss_pred ------------------------EEEECCEEEEeCCHHHHHhCcCcHHHHHHHhh
Confidence 9999999999998888753 456777777654
No 172
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-49 Score=384.53 Aligned_cols=222 Identities=34% Similarity=0.548 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEeCC------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 90 VLIDCRNVYKSFGE------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 57999999999963 469999999999999999999999999999999999999999999999998753211111
Q ss_pred hccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
.+.++||+||++. ++. .|+.+|+.|+... .+....+..+++.++++.+||.++.++++.+|||||||||+|||||
T Consensus 83 -~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 83 -IRNKAGMVFQNPDNQIVA-TIVEEDVAFGPEN-LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred -HhhheEEEecChhhhhcc-ccHHHHHHhhHhh-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 2346999999984 454 6999999886532 2345556667789999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||+|||+.++..+.+.|++++++ | .|+|++|||++++.. |||+
T Consensus 160 ~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tillvtH~~~~~~~-~d~v------- 214 (280)
T PRK13633 160 AM-------RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG----------ITIILITHYMEEAVE-ADRI------- 214 (280)
T ss_pred Hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecChHHHhc-CCEE-------
Confidence 97 69999999999999999999999999999765 5 599999999999876 8877
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 215 -----------------------~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 215 -----------------------IVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred -----------------------EEEECCEEEEecCHHHHhc
Confidence 9999999999998877653
No 173
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.3e-49 Score=367.43 Aligned_cols=211 Identities=32% Similarity=0.535 Sum_probs=184.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
++++||+++|+. .++++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... . .+.+++|
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~--~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--P--YQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--h--hccceEE
Confidence 468999999974 578999999999999999999999999999999999999999999999875321 1 2236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|+.||+.+...... ....+.++++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 146 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGL-KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVR-------P 146 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccC-CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhc-------C
Confidence 9999999998999999987543211 1122335567889999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||++||+.++..+.++|+++.++ + .|+|++||+++++..+||++
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tii~vsh~~~~~~~~~d~v----------------- 199 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQ----------RTLLMVTHHLSDARAIASQI----------------- 199 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHhhcCeE-----------------
Confidence 9999999999999999999999999999765 4 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEec
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
++|++|++++.|.
T Consensus 200 -------------~~l~~g~i~~~~~ 212 (213)
T TIGR01277 200 -------------AVVSQGKIKVVSD 212 (213)
T ss_pred -------------EEEECCeEEEecC
Confidence 9999999998874
No 174
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.7e-49 Score=413.22 Aligned_cols=219 Identities=32% Similarity=0.510 Sum_probs=195.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++... ......+..|
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARL-TPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHHHhCCE
Confidence 579999999999988899999999999999999999999999999999999999999999999987543 2222223369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
||+||++.+++.+||+||+.++.. ...+.++++.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~------ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLP-----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR------ 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccc-----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc------
Confidence 999999999999999999988542 122345678899999999988999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|++++++| +|||++|||++++..+|||+
T Consensus 158 -~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiiivtHd~~~~~~~~d~i---------------- 210 (510)
T PRK15439 158 -DSRILILDEPTASLTPAETERLFSRIRELLAQG----------VGIVFISHKLPEIRQLADRI---------------- 210 (510)
T ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 699999999999999999999999999998776 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 211 --------------~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 211 --------------SVMRDGTIALSGKTADLS 228 (510)
T ss_pred --------------EEEECCEEEEecChHHcC
Confidence 999999999999887764
No 175
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-49 Score=380.83 Aligned_cols=223 Identities=30% Similarity=0.463 Sum_probs=192.9
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ... .+
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~-~~~-~~ 82 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN-FEK-LR 82 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-HHH-HH
Confidence 467999999999975 45999999999999999999999999999999999999999999999999875421 112 23
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 167 ~~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
.+|+|+||++. +|+..|+.+|+.+..... ....++..+++.++++.+++.++.++++.+||||||||++|||||+.
T Consensus 83 ~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-- 159 (269)
T PRK13648 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL-- 159 (269)
T ss_pred hheeEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 36999999985 677789999998865322 23444556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.+.|++++++ + .|+|++||+++++.. |||+
T Consensus 160 -----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tiiivtH~~~~~~~-~d~i----------- 212 (269)
T PRK13648 160 -----NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN----------ITIISITHDLSEAME-ADHV----------- 212 (269)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCchHHhc-CCEE-----------
Confidence 69999999999999999999999999999765 4 599999999999975 8877
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 213 -------------------~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 213 -------------------IVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred -------------------EEEECCEEEEecCHHHHhc
Confidence 9999999999998877643
No 176
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-49 Score=381.99 Aligned_cols=237 Identities=32% Similarity=0.518 Sum_probs=198.0
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~ 162 (382)
+.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.......
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 5578999999999998899999999999999999999999999999999999997 69999999999864311111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIA 238 (382)
...+.+++|+||++.+|+. |++||+.+..... +... ...+++.++++.+++. +..++++.+|||||||||+||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~-~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ-GYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred HhhhccEEEEecCCccCcC-CHHHHHHHHHHHc-CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 1123469999999998885 9999998765322 2222 3456788999999984 457889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|+||||||||+|||+.++..+.++|++++++ .|+|++|||++++..+|||+
T Consensus 193 raL~~-------~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-----------~tiii~tH~~~~i~~~~dri----- 249 (285)
T PRK14254 193 RAIAP-------DPEVILMDEPASALDPVATSKIEDLIEELAEE-----------YTVVIVTHNMQQAARISDKT----- 249 (285)
T ss_pred HHHHc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHhhcCEE-----
Confidence 99997 69999999999999999999999999999764 39999999999999999986
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+++|++|+|++.|++.++. .+.++.+..|+..
T Consensus 250 ------------------------~v~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 282 (285)
T PRK14254 250 ------------------------AVFLTGGELVEFDDTDKIFENPESQRVEDYITG 282 (285)
T ss_pred ------------------------EEEeeCCEEEEeCCHHHHHhCcCCHHHHHHhhh
Confidence 1467999999999888765 3455666666643
No 177
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-50 Score=421.37 Aligned_cols=285 Identities=29% Similarity=0.446 Sum_probs=223.2
Q ss_pred ccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCC
Q 016804 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (382)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
+.....|++....+-..+..+++.. +-.-+.-..-+||.+.....|+-... .... |.
T Consensus 404 ~g~L~sFllY~~~~g~sl~~ls~~y-----s~lmkgvGAs~rvFel~dr~P~i~~~-G~~~-----------------p~ 460 (716)
T KOG0058|consen 404 SGALSSFLLYQVQLGSSLSGLSSFY-----SELMKGVGASERVFELMDRKPRIPLT-GTLA-----------------PD 460 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcchHHHHHHHhccCCCCCCC-Cccc-----------------cc
Confidence 3334445555555555555554444 44445556678899888887744433 1111 11
Q ss_pred CCCcceEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 86 DDGDVLIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~~---~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
.-.-.|+++||+|+|+.+ ++|+|+||+|++||++|||||||+||||+.++|..||+|++|+|.+||+|+.++...
T Consensus 461 -~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~- 538 (716)
T KOG0058|consen 461 -HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHK- 538 (716)
T ss_pred -cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHH-
Confidence 112249999999999764 599999999999999999999999999999999999999999999999999876433
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGq 231 (382)
+.+ ++||+|.|+|.||. -||+|||.|+.. ..+ ++++..+.++.+.+++....| .+|||||
T Consensus 539 ~lr-~~Ig~V~QEPvLFs-~sI~eNI~YG~~---~~t----~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 539 YLR-RKIGLVGQEPVLFS-GSIRENIAYGLD---NAT----DEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred HHH-HHeeeeeccceeec-ccHHHHHhcCCC---CCC----HHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 333 47999999999997 599999999763 233 344666777777776666555 5999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||+||||||++ +|.||||||.||+||.+++..+++.|.++.++ +|+|+|+|+++++++ ||
T Consensus 610 KQRIAIARALlr-------~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-----------rTVlvIAHRLSTV~~-Ad 670 (716)
T KOG0058|consen 610 KQRIAIARALLR-------NPRVLILDEATSALDAESEYLVQEALDRLMQG-----------RTVLVIAHRLSTVRH-AD 670 (716)
T ss_pred HHHHHHHHHHhc-------CCCEEEEechhhhcchhhHHHHHHHHHHhhcC-----------CeEEEEehhhhHhhh-cc
Confidence 999999999998 59999999999999999999999999998765 499999999999987 55
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
+|+|+++|+|++.|+.+|++...+....++.+
T Consensus 671 ------------------------------~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~ 702 (716)
T KOG0058|consen 671 ------------------------------QIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQ 702 (716)
T ss_pred ------------------------------EEEEEcCCeEEecccHHHHhhCcccHHHHHHH
Confidence 45999999999999777777666555555554
No 178
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-49 Score=378.69 Aligned_cols=235 Identities=29% Similarity=0.445 Sum_probs=195.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++........
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 458999999999998899999999999999999999999999999999999986 489999999998642111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|+|+||++.+|+ .|++||+.++.... +.. ....+++.++++.+++. +..++.+.+||||||||++|||
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN-GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhc-Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 12336999999999988 59999998865321 121 22345567778888874 3567889999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++.++ .|||++||+++++.++|||+
T Consensus 165 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-----------~tvi~vtH~~~~~~~~~d~v------ 220 (264)
T PRK14243 165 AIAV-------QPEVILMDEPCSALDPISTLRIEELMHELKEQ-----------YTIIIVTHNMQQAARVSDMT------ 220 (264)
T ss_pred HHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-----------CEEEEEecCHHHHHHhCCEE------
Confidence 9997 69999999999999999999999999999753 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEe---------CCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLY---------EGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~---------~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|+ +|++++.|++.++. .+.++.+.+++.+
T Consensus 221 ------------------------~~l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 261 (264)
T PRK14243 221 ------------------------AFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYVSG 261 (264)
T ss_pred ------------------------EEEecccccccccCceEEEeCCHHHHHhCCCcHHHHHHhhh
Confidence 8888 89999999888875 4566777776654
No 179
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-49 Score=410.78 Aligned_cols=239 Identities=32% Similarity=0.546 Sum_probs=211.7
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC----ccEEEECCEECCCCCCh
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAGLISD 161 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~----sG~I~i~G~~i~~~~~~ 161 (382)
++|+++||++.|.. .++++||||+|.+||++||||.|||||||+.+.|+|++++. +|+|.++|+++..+...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 47999999999953 26999999999999999999999999999999999999987 89999999988776443
Q ss_pred hh--hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc--CCCCCCChHHHHHH
Q 016804 162 EE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED--RLPSELSGGMKKRV 235 (382)
Q Consensus 162 ~~--~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~--~~~~~LSGGqrQRV 235 (382)
.. .++.+|+||||+| .|.|.+||.+.|.-.+..+.....++.++++.++|+.+||.+... +||++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 22 2344699999997 477779999999887766665667888899999999999976544 59999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
.||+||++ +|++||+||||++||+..+.+++++|+++.++.+ +++|+||||+..+.++||||
T Consensus 164 ~iAmALa~-------~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g---------~a~l~ITHDl~Vva~~aDrv-- 225 (539)
T COG1123 164 MIAMALAL-------KPKLLIADEPTTALDVTTQAQILDLLKDLQRELG---------MAVLFITHDLGVVAELADRV-- 225 (539)
T ss_pred HHHHHHhC-------CCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC---------cEEEEEcCCHHHHHHhcCeE--
Confidence 99999997 6999999999999999999999999999987642 79999999999999999988
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+||++|++++.|++++++ ++.||+++.+...
T Consensus 226 ----------------------------~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a 257 (539)
T COG1123 226 ----------------------------VVMYKGEIVETGPTEEILSNPQHPYTRGLLAA 257 (539)
T ss_pred ----------------------------EEEECCEEEEecCHHHHHhccCCcccHHHHhh
Confidence 999999999999999976 6789999987653
No 180
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-49 Score=383.94 Aligned_cols=222 Identities=31% Similarity=0.455 Sum_probs=189.2
Q ss_pred eEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCC---CChh
Q 016804 91 LIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL---ISDE 162 (382)
Q Consensus 91 ~I~~~nvs~~yg~~-----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~---~~~~ 162 (382)
.|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ....
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 48999999999764 499999999999999999999999999999999999999999999999986421 0011
Q ss_pred hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
...+.+|+|++|++ .+++ .|++||+.++... .+...++..+++.++++.++|. ++.++++.+||||||||++|||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVN-LGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 11233699999997 3555 6999999886532 2234445556778899999994 6889999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||+. +|++|||||||+|||+.++..+.++|+++.++ + +|+|++||+++++.++|||+
T Consensus 164 al~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiiiisH~~~~~~~~~d~i----- 221 (289)
T PRK13645 164 IIAM-------DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK----------KRIIMVTHNMDQVLRIADEV----- 221 (289)
T ss_pred HHHh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-----
Confidence 9997 69999999999999999999999999999764 4 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 222 -------------------------~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 -------------------------IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred -------------------------EEEECCEEEEeCCHHHHh
Confidence 999999999999877754
No 181
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.3e-49 Score=368.50 Aligned_cols=210 Identities=30% Similarity=0.566 Sum_probs=186.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . ...++|
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~--~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----D--LHKIGS 74 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----c--cccEEE
Confidence 4789999999988999999999999999999999999999999999999999999999999875321 1 126999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|++||+.+..... +.. .+++.++++.+|+++..++.+.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~-------~ 142 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLL-GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLN-------H 142 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHc-CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998764322 222 2356788999999998999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|+++++++ .|+|++|||++++.++|||+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~----------~tiii~sH~~~~~~~~~d~i------------------ 194 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQG----------ITVILSSHILSEVQQLADHI------------------ 194 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHhcCEE------------------
Confidence 99999999999999999999999999997665 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEecccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|++|++++.|++.+
T Consensus 195 ------------~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 195 ------------GIISEGVLGYQGKINK 210 (223)
T ss_pred ------------EEEeCCEEEEecChhh
Confidence 9999999999997653
No 182
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.1e-49 Score=425.38 Aligned_cols=279 Identities=28% Similarity=0.419 Sum_probs=219.8
Q ss_pred cchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 016804 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (382)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (382)
...+.+...+..+++++..+.+.. .....+....+|+......|....... . .+.
T Consensus 392 G~lva~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~-~-------------------~~~ 446 (686)
T TIGR03797 392 GSFLAFNTAFGSFSGAVTQLSNTL-----ISILAVIPLWERAKPILEALPEVDEAK-T-------------------DPG 446 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCcccccCc-C-------------------CCC
Confidence 444455555566677777776666 667788888899998877664211000 0 000
Q ss_pred CCcceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.....|+++||+|+|+ ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||+++..+.... .
T Consensus 447 ~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~-l 525 (686)
T TIGR03797 447 KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQA-V 525 (686)
T ss_pred CCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHH-H
Confidence 1112499999999995 357999999999999999999999999999999999999999999999999987754333 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (382)
+.+||||+|++.+|+. |++|||.++. . .+ ++++.++++.++++++.++.| ..|||||||
T Consensus 526 -r~~i~~v~Q~~~lf~g-TI~eNi~~~~---~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 526 -RRQLGVVLQNGRLMSG-SIFENIAGGA---P-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred -HhccEEEccCCccCcc-cHHHHHhcCC---C-CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 3369999999999985 9999998742 1 22 344678899999887666554 579999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||++ +|++||||||||+||+.+++.+++.|+++ + +|+|+|||+++.+.. ||||
T Consensus 596 RialARAll~-------~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~----------~T~IiItHr~~~i~~-~D~I 654 (686)
T TIGR03797 596 RLLIARALVR-------KPRILLFDEATSALDNRTQAIVSESLERL---K----------VTRIVIAHRLSTIRN-ADRI 654 (686)
T ss_pred HHHHHHHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHh---C----------CeEEEEecChHHHHc-CCEE
Confidence 9999999997 59999999999999999999999999876 3 499999999999865 7766
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|+|+++|+.+++... ++...+++.
T Consensus 655 ------------------------------ivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~ 683 (686)
T TIGR03797 655 ------------------------------YVLDAGRVVQQGTYDELMAR-EGLFAQLAR 683 (686)
T ss_pred ------------------------------EEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 99999999999977777654 444455443
No 183
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-49 Score=374.34 Aligned_cols=231 Identities=31% Similarity=0.508 Sum_probs=192.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhhhcc
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
-+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++..........+
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 468999999998899999999999999999999999999999999999986 479999999998643211111123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCC-CCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIArAL 241 (382)
.+++|+||++.+|+. |++||+.+....... ......++.+.++++.+|+.+ ..++.+.+||||||||++|||||
T Consensus 86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 86 AKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 369999999999985 999999876422211 123344566788999999964 46788999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.+.|+++.+ + .|+|++|||++++.++|||+
T Consensus 165 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiiisH~~~~~~~~~d~i-------- 218 (251)
T PRK14244 165 AV-------KPTMLLMDEPCSALDPVATNVIENLIQELKK-N----------FTIIVVTHSMKQAKKVSDRV-------- 218 (251)
T ss_pred hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHhhcCEE--------
Confidence 97 6999999999999999999999999999954 4 59999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHH
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQF 371 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~ 371 (382)
++|++|++++.|++.++.. +.++.+.++
T Consensus 219 ----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14244 219 ----------------------AFFQSGRIVEYNTTQEIFKNPQSSKTKRY 247 (251)
T ss_pred ----------------------EEEECCEEEEeCCHHHHhcCCCChHHHHh
Confidence 9999999999998888753 345555554
No 184
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.5e-49 Score=370.63 Aligned_cols=230 Identities=39% Similarity=0.638 Sum_probs=199.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+..++|
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~----~~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH----ARDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC----hhhcCEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999875321 12336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|+.||+.+..... +.......+.+.++++.+++.+..++.+.+||+||+||++|||||+. +
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~-------~ 148 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAV-------E 148 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998765322 23334445667889999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|+++||||||+|||+.++..+.++|++++++ + .|+|++||+++++.++|||+
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~----------~tvli~sH~~~~~~~~~d~i----------------- 201 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH----------VTTVFVTHDQEEAMEVADRI----------------- 201 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHhhcCEE-----------------
Confidence 9999999999999999999999999999875 4 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+.+++.. +.++.+..+..
T Consensus 202 -------------~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 232 (237)
T TIGR00968 202 -------------VVMSNGKIEQIGSPDEVYDHPANPFVMSFLG 232 (237)
T ss_pred -------------EEEECCEEEEecCHHHHHcCCCcHHHHHhcc
Confidence 9999999999998777653 34566665543
No 185
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-49 Score=380.99 Aligned_cols=222 Identities=32% Similarity=0.501 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
++|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .... .+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~-~~~~-~~ 80 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE-NVWN-LR 80 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC-CHHH-Hh
Confidence 36999999999974 3599999999999999999999999999999999999999999999999987542 1122 23
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 167 ~~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
.+|||+||++. +++..||.||+.++... .+...++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~-- 157 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMEN-QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL-- 157 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 46999999984 56668999999876432 223445556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||++||+.++..+.++|++++++ | .|+|++|||++++. .|||+
T Consensus 158 -----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tiil~sH~~~~~~-~~d~i----------- 210 (277)
T PRK13642 158 -----RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ----------LTVLSITHDLDEAA-SSDRI----------- 210 (277)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHH-hCCEE-----------
Confidence 69999999999999999999999999999875 5 59999999999997 58877
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 211 -------------------~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 211 -------------------LVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred -------------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998877653
No 186
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-49 Score=375.27 Aligned_cols=237 Identities=29% Similarity=0.434 Sum_probs=197.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-----sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.........
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 3699999999998888999999999999999999999999999999999999986 89999999986321111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC-CHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIAr 239 (382)
.+..++|+||++.+|+ +|++||+.+..... +. ...+..+++.++++.+++.+ ..++.+.+||||||||++|||
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV-GWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 2336999999999998 89999998764221 22 23344566788999998843 568889999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||+. +|++|||||||++||+.++..+.+.|++++++ + .|+|++|||++++.++|||+
T Consensus 164 al~~-------~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~----------~tiiivsH~~~~i~~~~d~i----- 221 (261)
T PRK14258 164 ALAV-------KPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE----------LTMVIVSHNLHQVSRLSDFT----- 221 (261)
T ss_pred HHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhcCEE-----
Confidence 9997 69999999999999999999999999998754 4 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeC-----CeEEEEeccccccc-CCCHHHHHHHcCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYE-----GKIVWQGMTHEFTS-SSNPIVQQFASGS 375 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~-----G~i~~~g~~~~~~~-~~~~~~~~~~~~~ 375 (382)
++|++ |+++..|+++++.. +......+|...+
T Consensus 222 -------------------------~~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (261)
T PRK14258 222 -------------------------AFFKGNENRIGQLVEFGLTKKIFNSPHDSRTREYVLSR 259 (261)
T ss_pred -------------------------EEEccCCCcCceEEEeCCHHHHHhCCCCHHHHHHHHhc
Confidence 99999 99999998888753 3455566665543
No 187
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-49 Score=376.34 Aligned_cols=239 Identities=29% Similarity=0.547 Sum_probs=201.4
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE------ECCCCCCh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR------KRAGLISD 161 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~------~i~~~~~~ 161 (382)
..++|+++|++|+|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|. ++... ..
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~-~~ 85 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI-DA 85 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC-CH
Confidence 347899999999999999999999999999999999999999999999999999999987777763 33221 11
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHH
Q 016804 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaI 237 (382)
.. .+.+++|+||++.+|+.+|+++|+.++........+++..+++.++++.+++. +..++.+..||+|||||++|
T Consensus 86 ~~-~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 86 IK-LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HH-HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 11 13369999999999988999999988653221123345556788999999996 35688999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++..+.+.|.++++ + .|+|++||+++++.++|||+
T Consensus 165 aral~~-------~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiilvsh~~~~~~~~~d~v---- 222 (257)
T PRK14246 165 ARALAL-------KPKVLLMDEPTSMIDIVNSQAIEKLITELKN-E----------IAIVIVSHNPQQVARVADYV---- 222 (257)
T ss_pred HHHHHc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------cEEEEEECCHHHHHHhCCEE----
Confidence 999997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcCCC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGSL 376 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~~ 376 (382)
++|++|+++..|+.+++.. +.++.++.|..|.+
T Consensus 223 --------------------------~~l~~g~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 256 (257)
T PRK14246 223 --------------------------AFLYNGELVEWGSSNEIFTSPKNELTEKYVIGRI 256 (257)
T ss_pred --------------------------EEEECCEEEEECCHHHHHhCCCcHHHHHHhhccC
Confidence 9999999999998888754 56678888777654
No 188
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-49 Score=388.90 Aligned_cols=237 Identities=33% Similarity=0.542 Sum_probs=199.2
Q ss_pred ceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChh
Q 016804 90 VLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 90 ~~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~ 162 (382)
.+|+++|++++|. .+++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++.......
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4799999999995 3579999999999999999999999999999999999986 57999999999975321111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCC-HHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR-DEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~-~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaI 237 (382)
...+.+++||||++.+|+ .|++||+.|+.... +.. .+..++.+.++++.++|. ...++++.+||||||||++|
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN-GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhc-CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 112336999999999996 79999999865321 222 233344567889998873 35678899999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|+||||||||++||+.+...+.+.|+++.++ .|+|+|||+++++.++||||
T Consensus 237 ARAl~~-------~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~-----------~Tii~iTH~l~~i~~~~Dri---- 294 (329)
T PRK14257 237 ARAIAL-------EPEVLLMDEPTSALDPIATAKIEELILELKKK-----------YSIIIVTHSMAQAQRISDET---- 294 (329)
T ss_pred HHHHHh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHHhCCEE----
Confidence 999997 69999999999999999999999999999763 49999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
++|++|+|++.|++.++. .+.++.+.+++.|..
T Consensus 295 --------------------------ivl~~G~i~e~g~~~~l~~~~~~~~~~~~~~~~~ 328 (329)
T PRK14257 295 --------------------------VFFYQGWIEEAGETKTIFIHPKNKRTKDYISGKI 328 (329)
T ss_pred --------------------------EEEECCEEEEeCCHHHHhcCCCcHHHHHHhcccc
Confidence 999999999999999965 567788888887653
No 189
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-49 Score=382.03 Aligned_cols=230 Identities=27% Similarity=0.371 Sum_probs=192.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--------ccEEEECCEECCCCCChh
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--------KGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~--------sG~I~i~G~~i~~~~~~~ 162 (382)
||+++|++++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.... ..
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~-~~ 79 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID-AP 79 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC-HH
Confidence 589999999999889999999999999999999999999999999999999998 999999999875421 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC---CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
.. +..++|+||++.+++.+|++||+.+...... .....+..+.+.++++.+|+.+..++++.+|||||||||+|||
T Consensus 80 ~~-~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 80 RL-ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HH-HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 22 2258999999876556899999987542111 1111234556788999999998899999999999999999999
Q ss_pred HHhcC--CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 240 SIIFD--NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 240 AL~~~--~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
||+.. +..-+.+|++|||||||++||+.++..+.++|+++.++ + .|+|++|||++++.++|||+
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tviiisH~~~~~~~~~d~i--- 225 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN----------LGVLAIVHDPNLAARHADRI--- 225 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEE---
Confidence 99930 00000259999999999999999999999999999875 5 59999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 226 ---------------------------~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 226 ---------------------------AMLADGAIVAHGAPADVLT 244 (272)
T ss_pred ---------------------------EEEECCeEEEecCHHHHcC
Confidence 9999999999998877754
No 190
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.6e-49 Score=417.62 Aligned_cols=282 Identities=29% Similarity=0.449 Sum_probs=225.8
Q ss_pred ccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCC
Q 016804 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (382)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
......++.....++.++..++... ..........+|+.+....|+.-...... ...
T Consensus 268 ~g~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~~~~~------------------~~~ 324 (567)
T COG1132 268 VGALAAFILYLLRLLTPILQLGEVV-----SLLQRASAAAERLFELLDEEPEVEDPPDP------------------LKD 324 (567)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccCCCCC------------------CCC
Confidence 3455667777777788888877777 77778888999999999886531111100 011
Q ss_pred CCCcceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 86 DDGDVLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
..+ -|+++||+|+|+ ++++|+|+||++++||.+|||||||||||||+++|+|+++|++|+|++||+|+........
T Consensus 325 ~~~--~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l- 401 (567)
T COG1132 325 TIG--SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL- 401 (567)
T ss_pred CCC--eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH-
Confidence 122 299999999998 6899999999999999999999999999999999999999999999999999987643333
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKK 233 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqrQ 233 (382)
+.+|+||||++.||. .||+|||.++.. ..++ +++.++++.++++++..+. ...|||||||
T Consensus 402 -r~~I~~V~Qd~~LF~-~TI~~NI~~g~~---~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQ 472 (567)
T COG1132 402 -RKRIGIVSQDPLLFS-GTIRENIALGRP---DATD----EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472 (567)
T ss_pred -HHhccEEcccceeec-ccHHHHHhcCCC---CCCH----HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHH
Confidence 336999999999998 699999998642 1233 3455666666665544443 3689999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||++ +|+|||||||||+||+.++..+++.+.++. ++ +|+|+|+|+++++.+ ||+|
T Consensus 473 rlaiARall~-------~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~----------rT~iiIaHRlsti~~-aD~I 533 (567)
T COG1132 473 RLAIARALLR-------NPPILILDEATSALDTETEALIQDALKKLL-KG----------RTTLIIAHRLSTIKN-ADRI 533 (567)
T ss_pred HHHHHHHHhc-------CCCEEEEeccccccCHHhHHHHHHHHHHHh-cC----------CEEEEEeccHhHHHh-CCEE
Confidence 9999999998 599999999999999999999999999887 43 489999999999988 7766
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
+||++|+|++.|+.+|+... +....++.
T Consensus 534 ------------------------------iVl~~G~i~e~G~h~eLl~~-~g~y~~l~ 561 (567)
T COG1132 534 ------------------------------IVLDNGRIVERGTHEELLAK-GGLYARLY 561 (567)
T ss_pred ------------------------------EEEECCEEEEecCHHHHHHc-CCHHHHHH
Confidence 99999999999988787755 44545444
No 191
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-49 Score=369.52 Aligned_cols=218 Identities=31% Similarity=0.544 Sum_probs=192.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|++. +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++.... . .+.+++|
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~-~---~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP-P---EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCC-h---hHcCEEE
Confidence 4689999999864 899999999999999999999999999999999999999999999999875421 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|+.||+.+.... .+....+..+.+.++++.+||.+..++++.+||||||||++|||||+. +
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 147 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKK-RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV-------N 147 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHc-------C
Confidence 99999999889999999876432 223344556677889999999999999999999999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|+++||||||+|||+.++..+.+.|+++.++ + .|+|++||+++++.++|||+
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~----------~tili~tH~~~~~~~~~d~i----------------- 200 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFG----------VTVLHVTHDFEEAWALADKV----------------- 200 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-----------------
Confidence 9999999999999999999999999999765 5 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+.+++..
T Consensus 201 -------------~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 201 -------------AIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred -------------EEEECCEEEEecCHHHHHh
Confidence 9999999999997766643
No 192
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-49 Score=409.16 Aligned_cols=281 Identities=26% Similarity=0.386 Sum_probs=220.8
Q ss_pred ccccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCC
Q 016804 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (382)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (382)
++....+++++++--+|.|+-.+++.. +--...+...+++......|....+...-. .
T Consensus 255 ltl~~~l~~LiLAPEff~PlR~lGs~f-----H~~~~g~aa~d~i~~~l~~~~~~~~~~~~~-----------------~ 312 (559)
T COG4988 255 LTLFAGLFVLILAPEFFQPLRDLGSFF-----HAAAAGEAAADKLFTLLESPVATPGSGEKA-----------------E 312 (559)
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHHhcCCCCCCCCcccc-----------------c
Confidence 334555666666777778887777666 555555566666666666665433322100 0
Q ss_pred CCCCCcceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 84 PEDDGDVLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 84 ~~~~~~~~I~~~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
........++++|++++|++. ++++|+||++++|+.++|||+||||||||+++|+|+.+|++|+|.+||.++..+....
T Consensus 313 ~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 313 VANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred cccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHH
Confidence 011112236667999999764 8999999999999999999999999999999999999999999999999988765555
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccC----------CCCCCChHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR----------LPSELSGGMK 232 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~----------~~~~LSGGqr 232 (382)
++ ++++||+|+|++|+. |++|||.++. ...+ ++.+.++++.+|+.++.++ ....|||||+
T Consensus 393 ~~--k~i~~v~Q~p~lf~g-TireNi~l~~---~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~ 462 (559)
T COG4988 393 WR--KQISWVSQNPYLFAG-TIRENILLAR---PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQA 462 (559)
T ss_pred HH--hHeeeeCCCCccccc-cHHHHhhccC---CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHH
Confidence 43 379999999999985 9999998853 1122 3456788889988877666 1256999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
|||++||||++ +++++|||||||+||.++++.+.+.|.++.++ +|+|++||++..+.++ |
T Consensus 463 QRlaLARAll~-------~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-----------ktvl~itHrl~~~~~~-D- 522 (559)
T COG4988 463 QRLALARALLS-------PASLLLLDEPTAHLDAETEQIILQALQELAKQ-----------KTVLVITHRLEDAADA-D- 522 (559)
T ss_pred HHHHHHHHhcC-------CCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-----------CeEEEEEcChHHHhcC-C-
Confidence 99999999997 59999999999999999999999999999887 4999999999999875 4
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCC
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSN 365 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~ 365 (382)
+|++|++|+++++|..+++..++.
T Consensus 523 -----------------------------~I~vld~G~l~~~g~~~~L~~~~~ 546 (559)
T COG4988 523 -----------------------------RIVVLDNGRLVEQGTHEELSEKQG 546 (559)
T ss_pred -----------------------------EEEEecCCceeccCCHHHHhhcCc
Confidence 559999999999997777665443
No 193
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-49 Score=420.23 Aligned_cols=239 Identities=26% Similarity=0.427 Sum_probs=201.7
Q ss_pred CCcceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCC-----
Q 016804 87 DGDVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG----- 157 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~----- 157 (382)
+.+++|+++||+++|+ +.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 8 ~~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 8 DARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CCCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 3456899999999996 2579999999999999999999999999999999999999999999999975421
Q ss_pred --C--CChh---hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc---ccccCCCC
Q 016804 158 --L--ISDE---EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPS 225 (382)
Q Consensus 158 --~--~~~~---~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~---~~~~~~~~ 225 (382)
. .... ..++.+||||||++ .+++.+||+||+.+++..+.+.+..+..+++.++++.+||. ...++++.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 0 0111 11223699999998 68888999999998764333345556677889999999995 35789999
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHH
Q 016804 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 226 ~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~ 304 (382)
+|||||||||+|||||+. +|+||||||||++||+.++.++.++|++++++ | +|||+||||++
T Consensus 168 ~LSgGq~QRv~iA~AL~~-------~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g----------~tvi~itHdl~ 230 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSC-------RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS----------MGVIFITHDMG 230 (623)
T ss_pred cCCHHHHHHHHHHHHHhC-------CCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHH
Confidence 999999999999999997 69999999999999999999999999999865 5 59999999999
Q ss_pred HHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHH
Q 016804 305 TIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFA 372 (382)
Q Consensus 305 ~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 372 (382)
++.++|||| ++|++|+|++.|+++++. .+.++++.++.
T Consensus 231 ~~~~~adri------------------------------~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~ 269 (623)
T PRK10261 231 VVAEIADRV------------------------------LVMYQGEAVETGSVEQIFHAPQHPYTRALL 269 (623)
T ss_pred HHHHhCCEE------------------------------EEeeCCeecccCCHHHhhcCCCChhhhhhh
Confidence 999999988 999999999999888875 34455555544
No 194
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=370.27 Aligned_cols=235 Identities=31% Similarity=0.521 Sum_probs=197.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++..........
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 5899999999998889999999999999999999999999999999999974 48999999999875321111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+++|+||++.+|+. |+.||+.+..........+..++++.++++.+++. +..++.+.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 3369999999999984 99999987643222123344567788899999984 346888999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.++|+++++ + .|+|++||+++++..+||++
T Consensus 162 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~~~~~i-------- 215 (250)
T PRK14266 162 AV-------SPEVILMDEPCSALDPISTTKIEDLIHKLKE-D----------YTIVIVTHNMQQATRVSKYT-------- 215 (250)
T ss_pred Hc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEECCHHHHHhhcCEE--------
Confidence 97 6999999999999999999999999999964 4 49999999999999999877
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+.+|+.+
T Consensus 216 ----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14266 216 ----------------------SFFLNGEIIESGLTDQIFINPKDKRTEDYITG 247 (250)
T ss_pred ----------------------EEEECCeEEEeCCHHHHHhCCCChHHHHHhcc
Confidence 999999999999888875 4456677776644
No 195
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-48 Score=376.68 Aligned_cols=235 Identities=29% Similarity=0.439 Sum_probs=195.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++........
T Consensus 18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred CceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 4689999999999988899999999999999999999999999999999999863 69999999998643111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|+|+||++.+|+ .|+.+|+.++.... ... ....+.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 98 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 174 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFP-KSIYENIAFAPRAN-GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIAR 174 (274)
T ss_pred HHhhcEEEEccCCcccc-ccHHHHHHhHHHhc-Cch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHH
Confidence 12346999999999987 49999998864321 121 12334567788888873 4568899999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++++ + .|||++|||++++.++|||+
T Consensus 175 aL~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~----------~tiii~sH~~~~~~~~~d~i------ 230 (274)
T PRK14265 175 AIAM-------KPDVLLMDEPCSALDPISTRQVEELCLELKE-Q----------YTIIMVTHNMQQASRVADWT------ 230 (274)
T ss_pred HHhh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEe---------CCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLY---------EGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~---------~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|+ +|++++.|++.++. .+.++.+..++.+
T Consensus 231 ------------------------~~l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~ 271 (274)
T PRK14265 231 ------------------------AFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYISG 271 (274)
T ss_pred ------------------------EEEecccccccccCceEEEeCCHHHHHhCCCCHHHHHHhhh
Confidence 8887 89999999988875 4456677776654
No 196
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=353.85 Aligned_cols=233 Identities=32% Similarity=0.525 Sum_probs=206.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC--CCCChhhhc--c
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA--GLISDEEIS--G 166 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~--~~~~~~~~~--~ 166 (382)
.|+++|+++.||..++|.|++|+.+.||.+.++||||||||||+|.|.-|.-|.+|+..|.|.... ....+.... +
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999887532 222222221 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
..+|+|||...|+|++||.||+........++++++...++.++|+++.|.+++|++|-.|||||+|||+|||||+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm---- 157 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM---- 157 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh----
Confidence 3599999999999999999999775544556888888899999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
++|++||+||||++|||+-..++.++|++|...| +|-++|||..+.+.+.+.||
T Consensus 158 ---mkpqvllfdeptaaldpeitaqvv~iikel~~tg----------itqvivthev~va~k~as~v------------- 211 (242)
T COG4161 158 ---MEPQVLLFDEPTAALDPEITAQIVSIIKELAETG----------ITQVIVTHEVEVARKTASRV------------- 211 (242)
T ss_pred ---cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcC----------ceEEEEEeehhHHHhhhhhe-------------
Confidence 4799999999999999999999999999999887 69999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHH
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQ 370 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~ 370 (382)
++|++|+|++.|+...|+.++.....+
T Consensus 212 -----------------vyme~g~ive~g~a~~ft~p~te~f~~ 238 (242)
T COG4161 212 -----------------VYMENGHIVEQGDASCFTEPQTEAFKN 238 (242)
T ss_pred -----------------EeeecCeeEeecchhhccCccHHHHHH
Confidence 999999999999877787554433333
No 197
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.8e-49 Score=413.68 Aligned_cols=265 Identities=25% Similarity=0.393 Sum_probs=209.3
Q ss_pred hhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEE
Q 016804 15 ATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDC 94 (382)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 94 (382)
.+..+..++..++... .-........+|+......+..+.+.. . .+.. ...|++
T Consensus 290 ~~~~~~~pl~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~-----------------~--~~~~--~~~i~~ 343 (592)
T PRK10790 290 YLGRLNEPLIELTTQQ-----SMLQQAVVAGERVFELMDGPRQQYGND-----------------D--RPLQ--SGRIDI 343 (592)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCccCCCC-----------------c--cCCC--CCeEEE
Confidence 3344556666655555 556667777788877765543211000 0 0011 123999
Q ss_pred EeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 95 RNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 95 ~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
+||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|++||.++........ +.+|+||+
T Consensus 344 ~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l--~~~i~~v~ 421 (592)
T PRK10790 344 DNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL--RQGVAMVQ 421 (592)
T ss_pred EEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH--HhheEEEc
Confidence 999999964 579999999999999999999999999999999999999999999999999876533332 33699999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHh
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSII 242 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~ 242 (382)
|++.+|+. |++|||.++. ..+ ++++.++++.+|++++.++.| ..||||||||++|||||+
T Consensus 422 Q~~~lF~~-Ti~~NI~~~~----~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl 492 (592)
T PRK10790 422 QDPVVLAD-TFLANVTLGR----DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV 492 (592)
T ss_pred cCCccccc-hHHHHHHhCC----CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 99999985 9999998852 122 334677888888877666554 579999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+ +|+|||||||||+||+.+++.+.+.|+++.++ +|+|+|||+++.+.. ||+|
T Consensus 493 ~-------~~~illlDEpts~LD~~t~~~i~~~l~~~~~~-----------~tvIivtHr~~~l~~-~D~i--------- 544 (592)
T PRK10790 493 Q-------TPQILILDEATANIDSGTEQAIQQALAAVREH-----------TTLVVIAHRLSTIVE-ADTI--------- 544 (592)
T ss_pred h-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCC-----------CEEEEEecchHHHHh-CCEE---------
Confidence 7 59999999999999999999999999998654 499999999988775 7766
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCC
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSN 365 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~ 365 (382)
++|++|++++.|+.+++.....
T Consensus 545 ---------------------i~l~~G~i~~~G~~~~L~~~~~ 566 (592)
T PRK10790 545 ---------------------LVLHRGQAVEQGTHQQLLAAQG 566 (592)
T ss_pred ---------------------EEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999998888765443
No 198
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.1e-49 Score=414.22 Aligned_cols=282 Identities=22% Similarity=0.361 Sum_probs=214.2
Q ss_pred cchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 016804 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (382)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (382)
....++......+..++..+.+.. ......+...+|+...+..|....... . .. ++
T Consensus 282 g~~~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~~~~~~~~~~~~-~---------------~~--~~- 337 (582)
T PRK11176 282 GTITVVFSSMIALMRPLKSLTNVN-----AQFQRGMAACQTLFAILDLEQEKDEGK-R---------------VI--ER- 337 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCcCCCCC-c---------------CC--CC-
Confidence 333333444444566776666555 566677778888888776653211000 0 00 01
Q ss_pred CCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
....|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++....... .
T Consensus 338 -~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~-~ 415 (582)
T PRK11176 338 -AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLAS-L 415 (582)
T ss_pred -CCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHH-H
Confidence 1123999999999964 67999999999999999999999999999999999999999999999999987653322 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (382)
+.+|+||||++.+|+ .|++|||.++.. ...+ ++++.++++.+|+.++.++.| .+|||||||
T Consensus 416 -~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~--~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 416 -RNQVALVSQNVHLFN-DTIANNIAYART--EQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred -HhhceEEccCceeec-chHHHHHhcCCC--CCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 236999999999998 599999987521 1122 344677788888776555443 569999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||++ +|+|||||||||+||+.++..+++.|.++.+. +|+|+|||+++.+.. ||+|
T Consensus 488 Ri~LARall~-------~~~ililDEptsaLD~~t~~~i~~~l~~~~~~-----------~tvI~VtHr~~~~~~-~D~I 548 (582)
T PRK11176 488 RIAIARALLR-------DSPILILDEATSALDTESERAIQAALDELQKN-----------RTSLVIAHRLSTIEK-ADEI 548 (582)
T ss_pred HHHHHHHHHh-------CCCEEEEECccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEecchHHHHh-CCEE
Confidence 9999999997 59999999999999999999999999998553 499999999988764 7766
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|+|++.|+.+++.... +..+.++
T Consensus 549 ------------------------------i~l~~g~i~e~g~~~~l~~~~-~~y~~l~ 576 (582)
T PRK11176 549 ------------------------------LVVEDGEIVERGTHAELLAQN-GVYAQLH 576 (582)
T ss_pred ------------------------------EEEECCEEEEeCCHHHHHhCC-ChHHHHH
Confidence 999999999999777766443 3344433
No 199
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.2e-48 Score=364.29 Aligned_cols=205 Identities=35% Similarity=0.569 Sum_probs=177.1
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhc
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~ 165 (382)
.|+++||++.|++ +.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ...
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 3789999999975 67999999999999999999999999999999999999999999999999875322111 112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+..|+|+||++.+|+.+|+.||+.+..........++..+.+.++++.+|+.+..++++.+||+|||||++|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~-- 158 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH-- 158 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc--
Confidence 336999999999998899999998865433223445556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++||+++. .++||++
T Consensus 159 -----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sh~~~~-~~~~d~v 211 (220)
T TIGR02982 159 -----RPKLVLADEPTAALDSKSGRDVVELMQKLAREQG----------CTILIVTHDNRI-LDVADRI 211 (220)
T ss_pred -----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHH-HhhCCEE
Confidence 69999999999999999999999999999864 4 599999999985 5788877
No 200
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4e-49 Score=424.47 Aligned_cols=281 Identities=26% Similarity=0.420 Sum_probs=217.5
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+....+.+...+..++.++..+.+.. .....+....+|+......|....... ... ... ... +
T Consensus 408 t~G~lva~~~l~~~~~~p~~~l~~~~-----~~~~~~~~~~~ri~~il~~~~e~~~~~-~~~-------~~~--~~~--~ 470 (710)
T TIGR03796 408 TIGMLVAFQSLMSSFLEPVNNLVGFG-----GTLQELEGDLNRLDDVLRNPVDPLLEE-EEA-------PAA--GSE--P 470 (710)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccccc-ccc-------ccc--ccc--c
Confidence 34455555566666777888777776 677888899999999988764321110 000 000 000 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
.......|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++..+....
T Consensus 471 ~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 471 SPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREV 550 (710)
T ss_pred CCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHH
Confidence 0011124999999999974 57999999999999999999999999999999999999999999999999987653322
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGq 231 (382)
. +.+||||+|++.+|+ .|++|||.++. ...+ ++++.++++.++++++.++.| ..|||||
T Consensus 551 -l-r~~i~~v~Q~~~lf~-gTi~eNi~l~~---~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 551 -L-ANSVAMVDQDIFLFE-GTVRDNLTLWD---PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred -H-HhheeEEecCChhhh-ccHHHHhhCCC---CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 2 336999999999997 59999998742 1123 344667788888876655443 6799999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||++|||||++ +|++||||||||+||+.+++.+.+.|++ .+ +|+|+|||+++.+.. ||
T Consensus 621 rQRiaLARall~-------~p~iliLDEptS~LD~~te~~i~~~l~~---~~----------~T~IiitHrl~~i~~-~D 679 (710)
T TIGR03796 621 RQRLEIARALVR-------NPSILILDEATSALDPETEKIIDDNLRR---RG----------CTCIIVAHRLSTIRD-CD 679 (710)
T ss_pred HHHHHHHHHHhh-------CCCEEEEECccccCCHHHHHHHHHHHHh---cC----------CEEEEEecCHHHHHh-CC
Confidence 999999999997 5999999999999999999999999976 33 599999999999875 77
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
|| ++|++|+|+++|+.+++...
T Consensus 680 ~I------------------------------ivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 680 EI------------------------------IVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred EE------------------------------EEEeCCEEEEecCHHHHHHc
Confidence 66 99999999999977777643
No 201
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8.6e-49 Score=360.42 Aligned_cols=201 Identities=38% Similarity=0.579 Sum_probs=174.8
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hhhccceEEE
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLRIGL 171 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~~~~~~Ig~ 171 (382)
++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...... ....+.+++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 47999999988999999999999999999999999999999999999999999999999986432111 1112336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
++|++.+|+.+|++||+.+.... .+....+..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~-------~ 152 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY-KKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK-------D 152 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc-------C
Confidence 99999999989999999886532 223344556678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||+|||+.++..+.+.|+++.+++ .|+|++||+++.+ .+||++
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~-~~~d~i 203 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEG----------KTIIIVTHDPEVA-KQADRV 203 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHH-hhcCEE
Confidence 99999999999999999999999999997765 5999999999876 579987
No 202
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.2e-48 Score=367.80 Aligned_cols=222 Identities=27% Similarity=0.420 Sum_probs=188.7
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.++|+++||+++|+++.+|+++||+|++||++||+||||||||||+++|+|+ ++|++|+|+++|.++.... .....+
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE-PEERAH 83 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC-hhhhhe
Confidence 3579999999999888899999999999999999999999999999999998 6899999999999876532 222222
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcC---C---CCHHHHHHHHHHHHHHcCCc-ccccCCCC-CCChHHHHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENS---K---MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALA 238 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~---~---~~~~~~~~~v~~~L~~~gL~-~~~~~~~~-~LSGGqrQRVaIA 238 (382)
..++|+||++.+++.+|+.+|+.+...... . ....+..+++.++++.+|+. ...++.+. +|||||||||+||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 248999999999999999999987542111 0 11223445678899999997 47788887 5999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh-hchhcccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQ 317 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~-aDrv~~~~ 317 (382)
|||+. +|++|||||||+|||+.++..+.++|+++.+++ .|+|++|||++++..+ |||+
T Consensus 164 ~al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~~tH~~~~~~~~~~d~i---- 222 (252)
T CHL00131 164 QMALL-------DSELAILDETDSGLDIDALKIIAEGINKLMTSE----------NSIILITHYQRLLDYIKPDYV---- 222 (252)
T ss_pred HHHHc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHhhhCCEE----
Confidence 99997 699999999999999999999999999998765 5999999999999886 7877
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccc
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTH 358 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~ 358 (382)
++|++|++++.|+++
T Consensus 223 --------------------------~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 223 --------------------------HVMQNGKIIKTGDAE 237 (252)
T ss_pred --------------------------EEEeCCEEEEecChh
Confidence 999999999999665
No 203
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-48 Score=406.85 Aligned_cols=236 Identities=27% Similarity=0.444 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCC
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~ 160 (382)
++|+++||+++|++ +++|+++||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++.....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 47999999999963 5799999999999999999999999999999999999987 79999999998754322
Q ss_pred hh--hhccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCCChHHHH
Q 016804 161 DE--EISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKK 233 (382)
Q Consensus 161 ~~--~~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSGGqrQ 233 (382)
.. ..++.+||||||++. +++.+|+.+|+.+......+.+..+..+++.++++.+||.+ ..++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 11 112236999999985 67778999999765422223445556678899999999975 468999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
||+|||||+. +|++|||||||++||+.++..+.++|++++++ + +|||+||||++++..+|||
T Consensus 164 rv~iAraL~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~dr 226 (529)
T PRK15134 164 RVMIAMALLT-------RPELLIADEPTTALDVSVQAQILQLLRELQQELN----------MGLLFITHNLSIVRKLADR 226 (529)
T ss_pred HHHHHHHHhc-------CCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC----------CeEEEEcCcHHHHHHhcCE
Confidence 9999999997 69999999999999999999999999999765 5 5999999999999999998
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHH
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 372 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 372 (382)
| ++|++|++++.|.+.++.. +.+...++++
T Consensus 227 i------------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 257 (529)
T PRK15134 227 V------------------------------AVMQNGRCVEQNRAATLFSAPTHPYTQKLL 257 (529)
T ss_pred E------------------------------EEEECCEEEEeCCHHHHhhCCCCHHHHHHH
Confidence 8 9999999999998877653 3344555554
No 204
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=9.8e-49 Score=366.72 Aligned_cols=201 Identities=32% Similarity=0.474 Sum_probs=173.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .. .+.+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~-~~~~ 82 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP-EI-YRQQ 82 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH-HH-HHhc
Confidence 457999999999998899999999999999999999999999999999999999999999999998754322 22 2336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
++|+||++.+|+ .|++||+.+...... ... ..+++.++++.+++. ...++++.+|||||||||+|||||+.
T Consensus 83 i~~~~q~~~l~~-~tv~enl~~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~---- 154 (225)
T PRK10247 83 VSYCAQTPTLFG-DTVYDNLIFPWQIRN-QQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF---- 154 (225)
T ss_pred cEEEeccccccc-ccHHHHHHhHHhhcC-CCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc----
Confidence 999999999997 599999987543221 111 234567899999996 57899999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++||+++++. .|||+
T Consensus 155 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sh~~~~~~-~~d~i 207 (225)
T PRK10247 155 ---MPKVLLLDEITSALDESNKHNVNEIIHRYVREQN----------IAVLWVTHDKDEIN-HADKV 207 (225)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECChHHHH-hCCEE
Confidence 69999999999999999999999999999765 4 59999999999986 68887
No 205
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-49 Score=372.81 Aligned_cols=218 Identities=30% Similarity=0.574 Sum_probs=203.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+++++++|+|+||++.+++|+||++++|++.|++|||||||||.+|+|+|+++|++|+|.|+|.++... .+.+|
T Consensus 1 ~~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~------~~~rI 74 (300)
T COG4152 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE------IKNRI 74 (300)
T ss_pred CceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh------hhhhc
Confidence 358999999999999999999999999999999999999999999999999999999999999986532 12369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
||+|.+..||+.+||.|.+.|.. ...+++.+++++.+..||+++++.+...+++.+||.|++|++.+-.|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla-~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviH------ 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLA-ELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIH------ 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHH-HhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhc------
Confidence 99999999999999999999866 45678999999999999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|+++|||||||||||.+.+.+.+.+.+++++| +|||++||.|+.++++||++
T Consensus 148 -ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G----------atIifSsH~Me~vEeLCD~l---------------- 200 (300)
T COG4152 148 -EPELLILDEPFSGLDPVNVELLKDAIFELKEEG----------ATIIFSSHRMEHVEELCDRL---------------- 200 (300)
T ss_pred -CCCEEEecCCccCCChhhHHHHHHHHHHHHhcC----------CEEEEecchHHHHHHHhhhh----------------
Confidence 799999999999999999999999999999998 69999999999999999999
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
+.|++|+.|-+|+..++.
T Consensus 201 --------------lmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 201 --------------LMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred --------------heecCCceEEeccHHHHH
Confidence 889999999999887764
No 206
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.4e-48 Score=407.78 Aligned_cols=237 Identities=28% Similarity=0.489 Sum_probs=200.7
Q ss_pred CcceEEEEeEEEEeC-----------CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 88 GDVLIDCRNVYKSFG-----------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg-----------~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
..++|+++||+++|+ ++++|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 356899999999995 3579999999999999999999999999999999999995 9999999999875
Q ss_pred CCCChhh-hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHH
Q 016804 157 GLISDEE-ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGM 231 (382)
Q Consensus 157 ~~~~~~~-~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGq 231 (382)
....... ..+.+|||+||++ .+++.+||.||+.++...+. .....+.++++.++++.+|+. +..++++.+|||||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 4321111 1123699999997 48888999999988653221 123344456788999999997 57899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
||||+|||||+. +|++|||||||+|||+.++..++++|++++++ + .|||+||||++++..+|
T Consensus 431 ~qrv~la~al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~vsHd~~~~~~~~ 493 (529)
T PRK15134 431 RQRIAIARALIL-------KPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ----------LAYLFISHDLHVVRALC 493 (529)
T ss_pred HHHHHHHHHHhC-------CCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC----------CEEEEEeCCHHHHHHhc
Confidence 999999999997 69999999999999999999999999999875 4 59999999999999999
Q ss_pred chhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHH
Q 016804 311 DRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFA 372 (382)
Q Consensus 311 Drv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 372 (382)
||+ ++|++|+|++.|++.++. .+.++++.+++
T Consensus 494 d~i------------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 526 (529)
T PRK15134 494 HQV------------------------------IVLRQGEVVEQGDCERVFAAPQQEYTRQLL 526 (529)
T ss_pred CeE------------------------------EEEECCEEEEEcCHHHHhcCCCChHHHHHh
Confidence 988 999999999999888875 45677777765
No 207
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=8.8e-49 Score=421.04 Aligned_cols=276 Identities=30% Similarity=0.411 Sum_probs=220.1
Q ss_pred ccccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCC
Q 016804 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (382)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (382)
++....+.+......+++++..+.+.. .-........+|+......|+....... ..
T Consensus 399 ls~G~l~a~~~~~~~~~~p~~~l~~~~-----~~~~~~~~~~~ri~~il~~~~e~~~~~~----------------~~-- 455 (694)
T TIGR03375 399 LTMGGLIACVMLSGRALAPLGQLAGLL-----TRYQQAKTALQSLDELMQLPVERPEGTR----------------FL-- 455 (694)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCCC----------------CC--
Confidence 344555566666667788888877777 6778889999999999887753211000 00
Q ss_pred CCCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh
Q 016804 84 PEDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 84 ~~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
........|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++......
T Consensus 456 ~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 456 HRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535 (694)
T ss_pred CCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHH
Confidence 00011124999999999963 5699999999999999999999999999999999999999999999999998765333
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChH
Q 016804 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGG 230 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGG 230 (382)
. . +.+|+||+|++.+|+. |++||+.++. ...+ ++++.++++.+++.++.++.| ..||||
T Consensus 536 ~-l-r~~i~~v~Q~~~lf~~-TI~eNi~~~~---~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 536 D-L-RRNIGYVPQDPRLFYG-TLRDNIALGA---PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred H-H-HhccEEECCChhhhhh-hHHHHHhCCC---CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 3 2 3469999999999984 9999998742 1122 344677788888877666555 579999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 231 qrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
||||++|||||++ +|++||||||||+||+.+++.+++.|.++.++ +|+|+|||+++.+. .|
T Consensus 606 QrQRlalARall~-------~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~-----------~T~iiItHrl~~~~-~~ 666 (694)
T TIGR03375 606 QRQAVALARALLR-------DPPILLLDEPTSAMDNRSEERFKDRLKRWLAG-----------KTLVLVTHRTSLLD-LV 666 (694)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCC-----------CEEEEEecCHHHHH-hC
Confidence 9999999999997 59999999999999999999999999998653 49999999999875 57
Q ss_pred chhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 311 DRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 311 Drv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
||| ++|++|+++++|+.+|+.
T Consensus 667 D~i------------------------------ivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 667 DRI------------------------------IVMDNGRIVADGPKDQVL 687 (694)
T ss_pred CEE------------------------------EEEeCCEEEeeCCHHHHH
Confidence 766 999999999999766654
No 208
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.6e-48 Score=369.07 Aligned_cols=228 Identities=26% Similarity=0.419 Sum_probs=193.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCEECCCCCChhhhcc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP----DKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p----~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
+|+++||+++| ++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ....+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~----~~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP----CALRG 78 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc----ccccc
Confidence 59999999999 57899999999999999999999999999999999999999 99999999998642 11122
Q ss_pred ceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCCChHHHHHHHHHHHH
Q 016804 167 LRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 167 ~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSGGqrQRVaIArAL 241 (382)
..|+|+||++. +++.+|+.+|+.+.+... +... ..+++.++++.+++.+ ..++.+.+|||||||||+|||||
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLAL-GKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHc-CCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 36999999984 455679999987643221 1222 2356788999999986 57899999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||+|||+.++..+.++|+++.++ | .|||++||+++++..+|||+
T Consensus 156 ~~-------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~til~~sH~~~~~~~~~d~v------- 211 (254)
T PRK10418 156 LC-------EAPFIIADEPTTDLDVVAQARILDLLESIVQKRA----------LGMLLVTHDMGVVARLADDV------- 211 (254)
T ss_pred hc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhCCEE-------
Confidence 97 69999999999999999999999999999765 4 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. +.++....|+.
T Consensus 212 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 242 (254)
T PRK10418 212 -----------------------AVMSHGRIVEQGDVETLFNAPKHAVTRSLVS 242 (254)
T ss_pred -----------------------EEEECCEEEEecCHHHHhhCCCCHHHHHHHH
Confidence 9999999999998888754 34566666654
No 209
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-48 Score=404.18 Aligned_cols=220 Identities=24% Similarity=0.354 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+|
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~-~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAS-TTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC-HHHHHhCCE
Confidence 5799999999999888999999999999999999999999999999999999999999999999875321 212223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhh-cCC-CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYE-NSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~-~~~-~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
||+||++.+|+.+||++|+.++... ..+ ....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~---- 157 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR---- 157 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh----
Confidence 9999999999999999999885421 111 2344556678899999999888899999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+.++..+.++|++++++| .|+|+||||++++.++|||+
T Consensus 158 ---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiiiitHd~~~~~~~~d~i-------------- 210 (501)
T PRK11288 158 ---NARVIAFDEPTSSLSAREIEQLFRVIRELRAEG----------RVILYVSHRMEEIFALCDAI-------------- 210 (501)
T ss_pred ---CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 699999999999999999999999999997766 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMT 357 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~ 357 (382)
++|++|+++..+..
T Consensus 211 ----------------~~l~~G~i~~~~~~ 224 (501)
T PRK11288 211 ----------------TVFKDGRYVATFDD 224 (501)
T ss_pred ----------------EEEECCEEEeecCc
Confidence 99999999876643
No 210
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=9.6e-49 Score=421.61 Aligned_cols=284 Identities=22% Similarity=0.314 Sum_probs=219.4
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+....+.+...+..+++++..+.+.. .-...+....+|+......|......... . +
T Consensus 410 s~G~lva~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~~~----------------~--~ 466 (708)
T TIGR01193 410 TLGQLITFNALLSYFLTPLENIINLQ-----PKLQAARVANNRLNEVYLVDSEFINKKKR----------------T--E 466 (708)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccccccc----------------c--C
Confidence 34445555555666677887777666 66778888999999998876432111000 0 0
Q ss_pred CCCCcceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 85 EDDGDVLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.......|+++||+|+|+ ++++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++........
T Consensus 467 ~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 467 LNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred CCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH
Confidence 001112399999999997 4679999999999999999999999999999999999999999999999999876543332
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMK 232 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqr 232 (382)
+.+||||+|++.+|+. |++|||.++.. ...+ ++++.++++.++++++.++. ...||||||
T Consensus 547 --r~~i~~v~Q~~~lf~g-TI~eNi~l~~~--~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 547 --RQFINYLPQEPYIFSG-SILENLLLGAK--ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred --HHheEEEecCceehhH-HHHHHHhccCC--CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 2369999999999985 99999988521 1122 23456777877776554443 367999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
||++|||||++ +|++|||||||++||+.+++.+++.|+++ ++ +|+|+|||+++.+. .||+
T Consensus 618 QRialARall~-------~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~----------~T~IiitHr~~~~~-~~D~ 677 (708)
T TIGR01193 618 QRIALARALLT-------DSKVLILDESTSNLDTITEKKIVNNLLNL--QD----------KTIIFVAHRLSVAK-QSDK 677 (708)
T ss_pred HHHHHHHHHhh-------CCCEEEEeCccccCCHHHHHHHHHHHHHh--cC----------CEEEEEecchHHHH-cCCE
Confidence 99999999997 59999999999999999999999999885 34 49999999999875 5776
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHH
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQF 371 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~ 371 (382)
| ++|++|+++++|+.+++... .+...++
T Consensus 678 i------------------------------~~l~~G~i~~~G~~~~L~~~-~~~y~~l 705 (708)
T TIGR01193 678 I------------------------------IVLDHGKIIEQGSHDELLDR-NGFYASL 705 (708)
T ss_pred E------------------------------EEEECCEEEEECCHHHHHhc-CCcHHHH
Confidence 6 99999999999977776643 3333443
No 211
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-48 Score=369.42 Aligned_cols=235 Identities=32% Similarity=0.476 Sum_probs=196.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.+.+.+++++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++........
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4679999999999998999999999999999999999999999999999999986 79999999998743211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|+|+||++.+|. +|++||+.++..... . ..+..+.+.++++.+++.. ..++++.+|||||+||++|||
T Consensus 86 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lar 162 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNR-Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIAR 162 (261)
T ss_pred hhhhceEEEecCCcccc-ccHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 12336999999999884 899999988753221 2 2334567888999999853 346788999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++.++.++|+++.+ + .|+|++||+++++..+|||+
T Consensus 163 al~~-------~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~i~~~~d~v------ 218 (261)
T PRK14263 163 AIAT-------EPEVLLLDEPCSALDPIATRRVEELMVELKK-D----------YTIALVTHNMQQAIRVADTT------ 218 (261)
T ss_pred HHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999954 4 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEe--------CCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLY--------EGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~--------~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|+ +|++++.|+++++.. +.++....+..|
T Consensus 219 ------------------------~~l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 258 (261)
T PRK14263 219 ------------------------AFFSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSDYISG 258 (261)
T ss_pred ------------------------EEEecccccccCCceEEEeCCHHHHHhCCCcHHHHHHhhc
Confidence 8885 899999998888754 345666666655
No 212
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.5e-49 Score=354.02 Aligned_cols=205 Identities=38% Similarity=0.570 Sum_probs=181.6
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--h
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~ 164 (382)
+|++++++|..+. .++|++|+|.|++||.+||||||||||||||-+++||..|++|+|++.|+++..+..+.. .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 6899999999864 479999999999999999999999999999999999999999999999999987654432 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
+..+||||||+..|.|+||..||++.++... +-...+....+.++|+++||.+.+..||.+|||||||||+|||||+.
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~-ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~- 163 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELR-GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG- 163 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhc-CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC-
Confidence 3446999999999999999999999987533 32334456678899999999999999999999999999999999985
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|+||+.||||.+||..+-+.+.++|-.++++.. +|.|+||||...+.+ |+|.
T Consensus 164 ------~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G---------~TlVlVTHD~~LA~R-c~R~ 216 (228)
T COG4181 164 ------RPDVLFADEPTGNLDRATGDKIADLLFALNRERG---------TTLVLVTHDPQLAAR-CDRQ 216 (228)
T ss_pred ------CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC---------ceEEEEeCCHHHHHh-hhhe
Confidence 7999999999999999999999999999987742 699999999998876 6766
No 213
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-48 Score=377.20 Aligned_cols=243 Identities=32% Similarity=0.483 Sum_probs=199.8
Q ss_pred CCCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCC
Q 016804 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLI 159 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~ 159 (382)
+-+..++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|+++|.++....
T Consensus 39 ~~~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 39 EFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ccCCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3345568999999999998899999999999999999999999999999999999986 68999999999875311
Q ss_pred ChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC-----------CCC-HHHHHHHHHHHHHHcCCc----ccccCC
Q 016804 160 SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS-----------KMR-DEQISELVKENLAAVGLK----GVEDRL 223 (382)
Q Consensus 160 ~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~-----------~~~-~~~~~~~v~~~L~~~gL~----~~~~~~ 223 (382)
......+.+|+|+||++.+|+ .||+||+.++..... ... .....+++.++++.+++. +..+++
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 197 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN 197 (305)
T ss_pred ccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence 111112336999999999998 599999988643211 011 223356678899999884 456888
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
+.+|||||||||+|||||++ +|+||||||||+|||+.++..+.++|++++++ .|+|++||++
T Consensus 198 ~~~LSgGq~qrv~LAraL~~-------~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-----------~tiiivtH~~ 259 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAV-------DPEVILMDEPASALDPIATSKIEDLIEELAEE-----------YTVVVVTHNM 259 (305)
T ss_pred cccCCHHHHHHHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEEcCH
Confidence 99999999999999999997 69999999999999999999999999999764 4999999999
Q ss_pred HHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcCC
Q 016804 304 STIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGS 375 (382)
Q Consensus 304 ~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~ 375 (382)
+.+..+|||+ +++|++|++++.|+++++.. ..++.+.+++.+.
T Consensus 260 ~~i~~~~d~i-----------------------------~~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 303 (305)
T PRK14264 260 QQAARISDQT-----------------------------AVFLTGGELVEYDDTDKIFENPESQRVEDYITGK 303 (305)
T ss_pred HHHHHhcCEE-----------------------------EEEecCCEEEEeCCHHHHHhCcccHHHHHHhccc
Confidence 9999999975 14679999999998888754 3456777777653
No 214
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-48 Score=403.78 Aligned_cols=220 Identities=21% Similarity=0.324 Sum_probs=191.9
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+++|+|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS-SKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCC-HHHHHhCCEEEEe
Confidence 478999999889999999999999999999999999999999999999999999999999875422 1112233699999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCC--CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 174 QSAALFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~--~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
|++.+++.+||+||+.++.....+ .+..+..+++.++++.+++....++++.+|||||||||+|||||+. +
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~-------~ 152 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY-------N 152 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh-------C
Confidence 999999899999999876421111 1334445678899999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|++++++| .|+|++|||++++..+|||+
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvii~tH~~~~~~~~~d~i------------------ 204 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG----------CGIVYISHKMEEIFQLCDEI------------------ 204 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEE------------------
Confidence 99999999999999999999999999998766 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 205 ------------~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 205 ------------TILRDGQWIATQPLAGLT 222 (491)
T ss_pred ------------EEEECCEEEeecChhhCC
Confidence 999999999999877753
No 215
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-48 Score=369.04 Aligned_cols=235 Identities=28% Similarity=0.469 Sum_probs=196.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCC--hh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLIS--DE 162 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~--~~ 162 (382)
.+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|.++..... ..
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 469999999999988999999999999999999999999999999999999975 79999999986531101 11
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCC-HHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR-DEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~-~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaI 237 (382)
...+.+|+|+||++.+|+. |++||+.++.... +.. ....++.+.++++.+++. +..++.+.+|||||||||+|
T Consensus 95 ~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 95 IEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR-GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred HHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc-CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 1123369999999999985 9999998765322 222 223345677888888873 45678899999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++..+.+.|+++++ + .|+|+|||+++++..+|||+
T Consensus 173 aral~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~----------~tiiivth~~~~~~~~~d~i---- 230 (265)
T PRK14252 173 ARALAT-------DPEILLFDEPTSALDPIATASIEELISDLKN-K----------VTILIVTHNMQQAARVSDYT---- 230 (265)
T ss_pred HHHHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C----------CEEEEEecCHHHHHHhCCEE----
Confidence 999997 6999999999999999999999999999975 3 49999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+.+++. .+.++.+.+|+.+
T Consensus 231 --------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 262 (265)
T PRK14252 231 --------------------------AYMYMGELIEFGATDTIFIKPKNKQTEDYITG 262 (265)
T ss_pred --------------------------EEEECCEEEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 999999999999887765 4557788887765
No 216
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.9e-48 Score=402.36 Aligned_cols=222 Identities=24% Similarity=0.422 Sum_probs=192.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.... .....+.+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN-IRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC-HHHHHhCC
Confidence 48999999999988999999999999999999999999999999999999997 7999999999875432 22222346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhc-C--CCCHHHHHHHHHHHHHHcCCcccc-cCCCCCCChHHHHHHHHHHHHhcC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYEN-S--KMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~-~--~~~~~~~~~~v~~~L~~~gL~~~~-~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
||||||++.+++.+||+||+.++.... . ....++..+++.++++.+++.+.. ++++.+|||||||||+|||||+.
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~- 158 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK- 158 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh-
Confidence 999999999999999999998864221 1 123344556788999999998654 67899999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+|||+
T Consensus 159 ------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviiitHd~~~~~~~~d~i----------- 211 (500)
T TIGR02633 159 ------QARLLILDEPSSSLTEKETEILLDIIRDLKAHG----------VACVYISHKLNEVKAVCDTI----------- 211 (500)
T ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCcHHHHHHhCCEE-----------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|.+.++
T Consensus 212 -------------------~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 212 -------------------CVIRDGQHVATKDMSTM 228 (500)
T ss_pred -------------------EEEeCCeEeeecCcccC
Confidence 99999999998877654
No 217
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.5e-48 Score=407.18 Aligned_cols=258 Identities=25% Similarity=0.418 Sum_probs=206.0
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC--eeeeEeeeEE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE--KHILRGVSFK 113 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~ 113 (382)
..........+|+......|+....... . ........|+++||+|+|++ +++|+|+||+
T Consensus 302 ~~~~~~~~s~~ri~~ll~~~~~~~~~~~-------~------------~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~ 362 (574)
T PRK11160 302 QHLGQVIASARRINEITEQKPEVTFPTT-------S------------TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQ 362 (574)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcc-------c------------CCCCCCCeEEEEEEEEECCCCCCcceecceEE
Confidence 4556677788899888877642110000 0 00011234999999999964 4699999999
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~ 193 (382)
|++||+++|+||||||||||+++|+|+++|++|+|++||+++........ +.+|+||+|++.+|+. |++||+.++..
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~--r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~ 439 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL--RQAISVVSQRVHLFSA-TLRDNLLLAAP 439 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH--HhheeEEcccchhhcc-cHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999876533332 3369999999999984 99999988531
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccC----------CCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC
Q 016804 194 ENSKMRDEQISELVKENLAAVGLKGVEDR----------LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (382)
Q Consensus 194 ~~~~~~~~~~~~~v~~~L~~~gL~~~~~~----------~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag 263 (382)
.. .++++.++++.++++++.++ ....||||||||++|||||++ +|++|||||||++
T Consensus 440 ---~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~-------~~~ililDE~ts~ 505 (574)
T PRK11160 440 ---NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH-------DAPLLLLDEPTEG 505 (574)
T ss_pred ---cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCccc
Confidence 12 23457788999999887766 346799999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEE
Q 016804 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343 (382)
Q Consensus 264 LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 343 (382)
||+.+++.+.+.|.++.+ + +|+|+|||+++.+.. ||+|
T Consensus 506 lD~~t~~~i~~~l~~~~~-~----------~tviiitHr~~~~~~-~d~i------------------------------ 543 (574)
T PRK11160 506 LDAETERQILELLAEHAQ-N----------KTVLMITHRLTGLEQ-FDRI------------------------------ 543 (574)
T ss_pred CCHHHHHHHHHHHHHHcC-C----------CEEEEEecChhHHHh-CCEE------------------------------
Confidence 999999999999999864 3 499999999999865 7766
Q ss_pred EEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 344 IFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 344 i~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|++++.|+.+|+... ++...+++
T Consensus 544 ~~l~~G~i~~~g~~~~l~~~-~g~y~~l~ 571 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLAQ-QGRYYQLK 571 (574)
T ss_pred EEEeCCeEEEeCCHHHHHhc-CcHHHHHH
Confidence 99999999999977776644 34444443
No 218
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.7e-48 Score=418.88 Aligned_cols=274 Identities=28% Similarity=0.427 Sum_probs=212.3
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+......+......+++++..+.+.. ..........+|+.+....++....... ..+
T Consensus 416 t~G~lva~~~~~~~l~~~l~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~~~~------------------~~~ 472 (711)
T TIGR00958 416 SSGNLVSFLLYQEQLGEAVRVLSYVY-----SGMMQAVGASEKVFEYLDRKPNIPLTGT------------------LAP 472 (711)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCCCCCCC------------------CCC
Confidence 33444555555566677777766666 6677788888999888776643211000 001
Q ss_pred CCCCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh
Q 016804 85 EDDGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
. .....|+++||+|+|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|++||+++..+...
T Consensus 473 ~-~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 473 L-NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred C-CCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 1 11224999999999964 4699999999999999999999999999999999999999999999999998765332
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChH
Q 016804 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGG 230 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGG 230 (382)
. . +.+|+||+|++.+|+ .|++|||.++.. ..+ ++++.++++.++++++.++.| .+||||
T Consensus 552 ~-l-r~~i~~v~Q~~~lF~-gTIreNI~~g~~---~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 552 Y-L-HRQVALVGQEPVLFS-GSVRENIAYGLT---DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred H-H-HhhceEEecCccccc-cCHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 2 2 236999999999997 599999988531 122 344667888888876655543 579999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 231 qrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
||||++|||||++ +|+|||||||||+||+++++.+++ .. ..++ +|+|+|||+++.+.. |
T Consensus 622 QkQRlalARALl~-------~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~----------~TvIiItHrl~~i~~-a 680 (711)
T TIGR00958 622 QKQRIAIARALVR-------KPRVLILDEATSALDAECEQLLQE-SR--SRAS----------RTVLLIAHRLSTVER-A 680 (711)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEEccccccCHHHHHHHHH-hh--ccCC----------CeEEEEeccHHHHHh-C
Confidence 9999999999997 599999999999999999998888 22 1233 599999999998865 6
Q ss_pred chhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 311 DRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 311 Drv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
|+| ++|++|+|+++|+.+|+...
T Consensus 681 D~I------------------------------ivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 681 DQI------------------------------LVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred CEE------------------------------EEEECCEEEEeeCHHHHHhC
Confidence 766 99999999999977776543
No 219
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.1e-48 Score=361.50 Aligned_cols=213 Identities=28% Similarity=0.498 Sum_probs=183.2
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEECCCCCChhh
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~---p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.+.++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~----~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP----DQ 78 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh----HH
Confidence 4679999999964 579999999999999999999999999999999999999 999999999998631 11
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcC--CCCHHHHHHHHHH-HHHHcCCcccccCCCCCCChHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKE-NLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~-~L~~~gL~~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+|+|+||++.+|+.+|+.||+.+...... ........+.+.+ .++.+++++..++.+.+||||||||++||||
T Consensus 79 -~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 79 -FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred -hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHH
Confidence 23469999999999999999999998653221 1112222234455 8999999988899999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH-HHHHHhhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl-~~~~~~aDrv~~~~~~ 319 (382)
|+. +|++|||||||+|||+.++..+.++|+++.+++ .|+|++||++ +++.++||++
T Consensus 158 l~~-------~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~----------~tiii~sh~~~~~~~~~~d~i------ 214 (226)
T cd03234 158 LLW-------DPKVLILDEPTSGLDSFTALNLVSTLSQLARRN----------RIVILTIHQPRSDLFRLFDRI------ 214 (226)
T ss_pred HHh-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCCCHHHHHhCCEE------
Confidence 997 599999999999999999999999999997765 5999999998 6899999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 215 ------------------------~~l~~G~i~~~g 226 (226)
T cd03234 215 ------------------------LLLSSGEIVYSG 226 (226)
T ss_pred ------------------------EEEeCCEEEecC
Confidence 999999998765
No 220
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.4e-48 Score=365.00 Aligned_cols=207 Identities=30% Similarity=0.534 Sum_probs=178.2
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe-cCCC
Q 016804 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF-QSAA 177 (382)
Q Consensus 99 ~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~-Q~~~ 177 (382)
++|+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . .. .+.+++|++ |++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~-~~-~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-R-KK-FLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-c-hh-hcccEEEEcCCccc
Confidence 566778899999999999999999999999999999999999999999999999875321 1 11 223699998 5577
Q ss_pred CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 016804 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257 (382)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLL 257 (382)
+++.+|++||+.+.... .+...++..+.+.++++.+|+.+..++++.+||||||||++|||||+. +|++|||
T Consensus 106 ~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~-------~p~llll 177 (236)
T cd03267 106 LWWDLPVIDSFYLLAAI-YDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLH-------EPEILFL 177 (236)
T ss_pred cCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-------CCCEEEE
Confidence 88889999999875432 223444556677889999999988899999999999999999999997 6999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCccc
Q 016804 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEV 337 (382)
Q Consensus 258 DEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~ 337 (382)
||||++||+.+++.+.++|++++++++ .|+|++||+++++.++||++
T Consensus 178 DEPt~~LD~~~~~~l~~~l~~~~~~~~---------~tiiivsH~~~~~~~~~d~i------------------------ 224 (236)
T cd03267 178 DEPTIGLDVVAQENIRNFLKEYNRERG---------TTVLLTSHYMKDIEALARRV------------------------ 224 (236)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCC---------CEEEEEecCHHHHHHhCCEE------------------------
Confidence 999999999999999999999976521 59999999999999999988
Q ss_pred ccccEEEEEeCCeEEEEe
Q 016804 338 FFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 338 ~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 225 ------~~l~~G~i~~~g 236 (236)
T cd03267 225 ------LVIDKGRLLYDG 236 (236)
T ss_pred ------EEEeCCEEEecC
Confidence 999999998764
No 221
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.5e-48 Score=357.81 Aligned_cols=206 Identities=30% Similarity=0.407 Sum_probs=180.2
Q ss_pred CCCCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 84 ~~~~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
|...++++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 4 ~~~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~----~ 79 (214)
T PRK13543 4 PLHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG----D 79 (214)
T ss_pred CCCCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----h
Confidence 344556789999999999988899999999999999999999999999999999999999999999999986431 1
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
.+..++|++|++.+++.+|++||+.+..... +. ...+.+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 80 -~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 80 -RSRFMAYLGHLPGLKADLSTLENLHFLCGLH-GR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred -hhhceEEeecCcccccCCcHHHHHHHHHHhc-CC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhc
Confidence 1235999999999998899999998764321 11 123456788999999988899999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|++|||||||++||+.+++.+.+.|+++.+++ .|+|++|||++++.++|||+++
T Consensus 155 -------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~~~i~~ 209 (214)
T PRK13543 155 -------PAPLWLLDEPYANLDLEGITLVNRMISAHLRGG----------GAALVTTHGAYAAPPVRTRMLT 209 (214)
T ss_pred -------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecChhhhhhhcceEEE
Confidence 599999999999999999999999999998776 5999999999999999998833
No 222
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2e-48 Score=366.06 Aligned_cols=217 Identities=30% Similarity=0.540 Sum_probs=179.0
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +.+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~-~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA-DPAWL-RRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc-CHHHH-hhcE
Confidence 478999999963 5799999999999999999999999999999999999999999999999986532 22222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHH-----HHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+|+||++.+|+ .||.||+.+... ........+ .+.++++.+ ++....++++.+|||||||||+|||||+
T Consensus 79 ~~~~q~~~~~~-~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 79 GVVLQENVLFN-RSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EEEcCCchhcc-chHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 99999998886 699999987431 112222111 123344554 5566667889999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||++||+.++..+.+.|+++.+ | .|+|++|||++++. .||++
T Consensus 155 ~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~-~~d~v--------- 206 (237)
T cd03252 155 H-------NPRILIFDEATSALDYESEHAIMRNMHDICA-G----------RTVIIIAHRLSTVK-NADRI--------- 206 (237)
T ss_pred h-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEeCCHHHHH-hCCEE---------
Confidence 7 6999999999999999999999999999964 5 59999999999985 58877
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|++++.|+++++...
T Consensus 207 ---------------------~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 207 ---------------------IVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred ---------------------EEEECCEEEEEcCHHHHHhc
Confidence 99999999999988777644
No 223
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-48 Score=370.04 Aligned_cols=218 Identities=27% Similarity=0.396 Sum_probs=184.8
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~-----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH-----hhccceE
Confidence 599999999995 5789999999999999999999999999999999999999999999999998531 1122359
Q ss_pred EEEecCCCCC--CCCCHHHHHHhhHhhcC---CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 170 GLVFQSAALF--DSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 170 g~V~Q~~~l~--~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
+|+||++.++ ...++++|+.++..... ........+++.++++.+||.+..++++.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~- 159 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ- 159 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc-
Confidence 9999998652 23478898865421110 11122334567889999999988999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++| .|+|++|||++++..+||++
T Consensus 160 ------~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g----------~tviivsH~~~~~~~~~d~v----------- 212 (272)
T PRK15056 160 ------QGQVILLDEPFTGVDVKTEARIISLLRELRDEG----------KTMLVSTHNLGSVTEFCDYT----------- 212 (272)
T ss_pred ------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 699999999999999999999999999998765 59999999999999999977
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
+++ +|++++.|+++++.
T Consensus 213 -------------------~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 213 -------------------VMV-KGTVLASGPTETTF 229 (272)
T ss_pred -------------------EEE-CCEEEeecCHHhcc
Confidence 777 89999999887764
No 224
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-48 Score=362.49 Aligned_cols=216 Identities=32% Similarity=0.530 Sum_probs=180.8
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|+++ ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~-~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT-LASL-RRQI 78 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC-HHHH-HhhE
Confidence 4789999999765 7999999999999999999999999999999999999999999999999865422 1222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHH-----HHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+|+||++.+|+ .|++||+.+.... ....+..+ .+.++++.+ ++....++++.+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~-~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 79 GLVSQDVFLFN-DTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred EEeCCCCeecc-ccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 99999999987 6999999875321 12222221 234555665 6777778889999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||++||+.++..+.+.|+++.+ + .|||++||+++++.. ||++
T Consensus 155 ~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~v--------- 206 (234)
T cd03251 155 K-------DPPILILDEATSALDTESERLVQAALERLMK-N----------RTTFVIAHRLSTIEN-ADRI--------- 206 (234)
T ss_pred c-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHhh-CCEE---------
Confidence 7 6999999999999999999999999999964 4 499999999999976 8877
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 207 ---------------------~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 207 ---------------------VVLEDGKIVERGTHEELLA 225 (234)
T ss_pred ---------------------EEecCCeEeeeCCHHHHHH
Confidence 9999999999997777653
No 225
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=359.61 Aligned_cols=237 Identities=29% Similarity=0.458 Sum_probs=206.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+.+|++++..++.+|++|||++++||++||+||||||||||||.|+|-+.|++|++.++|.++..+... ...+ +-+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~-~lA~-~ra 78 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE-ELAR-HRA 78 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHH-HHHH-Hhh
Confidence 68999999999999999999999999999999999999999999999999999999999999998876433 3332 468
Q ss_pred EEecCCCC-CCCCCHHHHHHhhHhhcCC-CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 171 LVFQSAAL-FDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 171 ~V~Q~~~l-~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
.+||+..+ || .||.|-+.++...+.. ....+..+.++++|.++++..+..+...+|||||||||.+||.|++-|+..
T Consensus 79 VlpQ~s~laFp-Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 79 VLPQNSSLAFP-FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hcccCcccccc-eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 99999887 65 7999999998765533 223355566889999999999999999999999999999999999866544
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
. ++++|+||||||+||+..+..++++.++++++| ..|+.|-||++.+..|||||
T Consensus 158 ~-~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g----------~~V~~VLHDLNLAA~YaDri--------------- 211 (259)
T COG4559 158 P-SGRWLFLDEPTSALDIAHQHHTLRLARQLAREG----------GAVLAVLHDLNLAAQYADRI--------------- 211 (259)
T ss_pred C-CCceEEecCCccccchHHHHHHHHHHHHHHhcC----------CcEEEEEccchHHHHhhhee---------------
Confidence 3 457999999999999999999999999999987 48999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++||++..|++.++++. +.+.+.+.
T Consensus 212 ---------------vll~~Grv~a~g~p~~vlt~--Etl~~vyg 239 (259)
T COG4559 212 ---------------VLLHQGRVIASGSPQDVLTD--ETLERVYG 239 (259)
T ss_pred ---------------eeeeCCeEeecCCHHHhcCH--HHHHHHhC
Confidence 99999999999999998753 34444444
No 226
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.1e-47 Score=360.45 Aligned_cols=218 Identities=30% Similarity=0.497 Sum_probs=184.9
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCEECCCCCChhhhccceEEEEecCCC--CC
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP----DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA--LF 179 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p----~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~--l~ 179 (382)
+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... +..+.+|+|++|++. ++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~----~~~~~~i~~~~q~~~~~~~ 76 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL----SIRGRHIATIMQNPRTAFN 76 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh----hhhhheeEEEecCchhhcC
Confidence 57899999999999999999999999999999999999 899999999986432 122236999999985 55
Q ss_pred CCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc---ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 016804 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (382)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~---~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLL 256 (382)
+.+|+++|+.+...... .......+++.++++.+++. +..++.+.+|||||||||+|||||+. +|+|||
T Consensus 77 ~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~-------~p~vll 148 (230)
T TIGR02770 77 PLFTMGNHAIETLRSLG-KLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL-------EPPFLI 148 (230)
T ss_pred cccCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc-------CCCEEE
Confidence 67899999977543221 22234456788999999998 56889999999999999999999997 699999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCc
Q 016804 257 YDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDK 335 (382)
Q Consensus 257 LDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~ 335 (382)
|||||+|||+.++..+.+.|++++++ + .|+|++||+++++..+|||+
T Consensus 149 LDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i---------------------- 196 (230)
T TIGR02770 149 ADEPTTDLDVVNQARVLKLLRELRQLFG----------TGILLITHDLGVVARIADEV---------------------- 196 (230)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE----------------------
Confidence 99999999999999999999999875 4 59999999999999999988
Q ss_pred ccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcCC
Q 016804 336 EVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGS 375 (382)
Q Consensus 336 ~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~ 375 (382)
++|++|++++.|+++++.. +......+++.+.
T Consensus 197 --------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (230)
T TIGR02770 197 --------AVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229 (230)
T ss_pred --------EEEECCEEEEeCCHHHHHhCcCCHHHHHHHHhc
Confidence 9999999999998888753 4566666776543
No 227
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.7e-47 Score=361.64 Aligned_cols=220 Identities=28% Similarity=0.430 Sum_probs=183.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
||+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.... .....+..
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELS-PEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCC-HHHHhhcc
Confidence 589999999999888999999999999999999999999999999999995 699999999998765432 22222235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhh---cCC---CCHHHHHHHHHHHHHHcCCc-ccccCCCC-CCChHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYE---NSK---MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALARS 240 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~---~~~---~~~~~~~~~v~~~L~~~gL~-~~~~~~~~-~LSGGqrQRVaIArA 240 (382)
++|++|++.+++.+|+.+++.+.... ... .......+.+.++++.+++. +..++.+. +|||||||||+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 99999999988877877776543211 000 12223456678899999994 56677775 899999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh-hchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~-aDrv~~~~~~ 319 (382)
|++ +|++|||||||++||+.++..+.++|+++++++ .|||++|||++++..+ ||++
T Consensus 160 l~~-------~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tiii~sH~~~~~~~~~~d~i------ 216 (248)
T PRK09580 160 AVL-------EPELCILDESDSGLDIDALKIVADGVNSLRDGK----------RSFIIVTHYQRILDYIKPDYV------ 216 (248)
T ss_pred HHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHhhhCCEE------
Confidence 997 599999999999999999999999999998765 5999999999999887 7877
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEeccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTH 358 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~ 358 (382)
++|++|++++.|+++
T Consensus 217 ------------------------~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 217 ------------------------HVLYQGRIVKSGDFT 231 (248)
T ss_pred ------------------------EEEECCeEEEeCCHH
Confidence 999999999999654
No 228
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-48 Score=353.46 Aligned_cols=199 Identities=35% Similarity=0.582 Sum_probs=182.9
Q ss_pred eEEEEeEEEEeCCee--eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~--iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++.+++++.+|++++ +|+|||++|.+||+++++||||||||||||+++|+.+|+.|+|.+||+.+.... . .
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg--a-----e 75 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG--A-----E 75 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC--c-----c
Confidence 577899999998877 999999999999999999999999999999999999999999999999886521 1 2
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
-|.|||++.|+|.+|+.||++|++. ..++.+.+..+++.+.+..+||.+..++++.+|||||||||.|||||+.
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~-l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~----- 149 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQ-LRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAV----- 149 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhc-----
Confidence 4899999999999999999999985 4567888888899999999999999999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|+||||+++||.-+++.++++|-++.++-+ +.+++||||++++.-+++|+
T Consensus 150 --eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg---------k~~lliTH~ieEAlflatrL 203 (259)
T COG4525 150 --EPQLLLLDEPFGALDALTREQMQELLLDLWQETG---------KQVLLITHDIEEALFLATRL 203 (259)
T ss_pred --CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC---------CeEEEEeccHHHHHhhhhee
Confidence 6999999999999999999999999999876521 58999999999999999988
No 229
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.4e-47 Score=404.56 Aligned_cols=215 Identities=27% Similarity=0.517 Sum_probs=180.6
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.|+++||+|+|++ +++|+|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++....... . +.+|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~-~-r~~i 411 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAS-L-RRNI 411 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHH-H-Hhhe
Confidence 4999999999975 57999999999999999999999999999999999999999999999999987653222 2 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqrQRVaIA 238 (382)
+||||++.+|+ .|++||+.++. ...++ +++.++++.++++++.++. ...||||||||++||
T Consensus 412 ~~v~Q~~~lf~-~Ti~~Ni~~~~---~~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 412 AVVFQDAGLFN-RSIEDNIRVGR---PDATD----EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred EEEecCccccc-ccHHHHHhcCC---CCCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 99999999997 59999998742 11232 3355667777766544443 357999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||++ +|+|||||||||+||+.+++.+++.|+++.+ + +|+|+|||+++.+. .||+|
T Consensus 484 Rall~-------~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~----------~tvIiitHr~~~~~-~~D~i----- 539 (588)
T PRK13657 484 RALLK-------DPPILILDEATSALDVETEAKVKAALDELMK-G----------RTTFIIAHRLSTVR-NADRI----- 539 (588)
T ss_pred HHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-C----------CEEEEEEecHHHHH-hCCEE-----
Confidence 99997 5999999999999999999999999998854 3 49999999998875 57766
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
++|++|++++.|+.+++....
T Consensus 540 -------------------------i~l~~G~i~~~g~~~~l~~~~ 560 (588)
T PRK13657 540 -------------------------LVFDNGRVVESGSFDELVARG 560 (588)
T ss_pred -------------------------EEEECCEEEEeCCHHHHHHCC
Confidence 999999999999777765443
No 230
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.3e-48 Score=359.58 Aligned_cols=205 Identities=35% Similarity=0.550 Sum_probs=174.7
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.... .... +..+
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i 80 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD-PADL-RRNI 80 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCC-HHHH-HhhE
Confidence 789999999975 56999999999999999999999999999999999999999999999999864321 1122 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIA 238 (382)
+|+||++.+|+ .|+.||+.+... ... .+.+.++++.+++.+..+++| .+||||||||++||
T Consensus 81 ~~~~q~~~~~~-~tv~e~l~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la 152 (220)
T cd03245 81 GYVPQDVTLFY-GTLRDNITLGAP---LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152 (220)
T ss_pred EEeCCCCcccc-chHHHHhhcCCC---CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence 99999999887 699999977431 111 234567788889887777655 69999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.++|++++++ .|+|++|||++.+ ++|||+
T Consensus 153 ~al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sH~~~~~-~~~d~v----- 208 (220)
T cd03245 153 RALLN-------DPPILLLDEPTSAMDMNSEERLKERLRQLLGD-----------KTLIIITHRPSLL-DLVDRI----- 208 (220)
T ss_pred HHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-----------CEEEEEeCCHHHH-HhCCEE-----
Confidence 99997 69999999999999999999999999998654 3999999999986 688877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 209 -------------------------~~l~~g~i~~~~ 220 (220)
T cd03245 209 -------------------------IVMDSGRIVADG 220 (220)
T ss_pred -------------------------EEEeCCeEeecC
Confidence 999999998654
No 231
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7.8e-48 Score=403.83 Aligned_cols=285 Identities=25% Similarity=0.407 Sum_probs=221.8
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+......+...+..++.++..+.+.. ......+...+|+...+..++...... . +
T Consensus 269 t~g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-~-------------------~ 323 (571)
T TIGR02203 269 TAGDFTAFITAMIALIRPLKSLTNVN-----APMQRGLAAAESLFTLLDSPPEKDTGT-R-------------------A 323 (571)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCC-C-------------------C
Confidence 33444555555666678887777776 667778888899988887664321100 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
.......|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ..
T Consensus 324 ~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~-~~ 402 (571)
T TIGR02203 324 IERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT-LA 402 (571)
T ss_pred CCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC-HH
Confidence 0011123999999999964 57999999999999999999999999999999999999999999999999987653 33
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGq 231 (382)
+. +.+|+|+||++.+|+. |++|||.++.. ...+ ++++.++++.+|++++.++.| ..|||||
T Consensus 403 ~~-~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~--~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 403 SL-RRQVALVSQDVVLFND-TIANNIAYGRT--EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred HH-HhhceEEccCcccccc-cHHHHHhcCCC--CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 32 3369999999999975 99999987421 1122 345677888888877665554 4699999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||++|||||++ +|+||||||||++||+.+++.+++.|+++.++ +|+|+|||+.+.+. .||
T Consensus 475 rQRiaLARall~-------~~~illLDEpts~LD~~~~~~i~~~L~~~~~~-----------~tiIiitH~~~~~~-~~D 535 (571)
T TIGR02203 475 RQRLAIARALLK-------DAPILILDEATSALDNESERLVQAALERLMQG-----------RTTLVIAHRLSTIE-KAD 535 (571)
T ss_pred HHHHHHHHHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEehhhHHHH-hCC
Confidence 999999999997 59999999999999999999999999988543 49999999997764 577
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
+| ++|++|++++.|+.+++... ++..+++..
T Consensus 536 ~i------------------------------i~l~~g~i~~~g~~~~l~~~-~~~~~~~~~ 566 (571)
T TIGR02203 536 RI------------------------------VVMDDGRIVERGTHNELLAR-NGLYAQLHN 566 (571)
T ss_pred EE------------------------------EEEeCCEEEeeCCHHHHHHc-CCHHHHHHH
Confidence 66 99999999999977776543 455555543
No 232
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-48 Score=400.08 Aligned_cols=226 Identities=23% Similarity=0.427 Sum_probs=192.6
Q ss_pred CcceEEEEeEEEEeC---CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEECCCCCChhh
Q 016804 88 GDVLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg---~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-p~sG~I~i~G~~i~~~~~~~~ 163 (382)
+.++|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|+++... ....
T Consensus 256 ~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~-~~~~ 334 (506)
T PRK13549 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIR-NPQQ 334 (506)
T ss_pred CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCC-CHHH
Confidence 346899999999993 4679999999999999999999999999999999999999 5999999999987532 1211
Q ss_pred hccceEEEEecCC---CCCCCCCHHHHHHhhHhh-cCC---CCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHH
Q 016804 164 ISGLRIGLVFQSA---ALFDSLTVRENVGFLLYE-NSK---MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~---~l~~~lTV~eni~~~~~~-~~~---~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRV 235 (382)
..+.+|+|+||++ .+++.+||.||+.++... ... .+..+..+++.++++.+++. +..++++.+|||||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 1233699999996 478889999999875421 111 12334456788999999996 578999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||+. +|++|||||||+|||+.++..++++|++++++| .|||++|||++++.++|||+
T Consensus 415 ~lA~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvi~~sHd~~~~~~~~d~v-- 475 (506)
T PRK13549 415 VLAKCLLL-------NPKILILDEPTRGIDVGAKYEIYKLINQLVQQG----------VAIIVISSELPEVLGLSDRV-- 475 (506)
T ss_pred HHHHHHhh-------CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhCCEE--
Confidence 99999997 699999999999999999999999999998776 59999999999999999988
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+++..|+++++.
T Consensus 476 ----------------------------~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 476 ----------------------------LVMHEGKLKGDLINHNLT 493 (506)
T ss_pred ----------------------------EEEECCEEEEEeccccCC
Confidence 999999999999877763
No 233
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-47 Score=399.88 Aligned_cols=225 Identities=33% Similarity=0.518 Sum_probs=189.5
Q ss_pred CcceEEEEeEEEEeC-----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC-CEE---CCCC
Q 016804 88 GDVLIDCRNVYKSFG-----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR-GRK---RAGL 158 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg-----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~-G~~---i~~~ 158 (382)
..++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++ |.+ +...
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 356899999999994 2579999999999999999999999999999999999999999999996 642 2111
Q ss_pred CC-hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-----cccCCCCCCChHHH
Q 016804 159 IS-DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----VEDRLPSELSGGMK 232 (382)
Q Consensus 159 ~~-~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-----~~~~~~~~LSGGqr 232 (382)
.. .....+.+|||+||++.+|+.+||+||+.+.... ....+..++++.++++.++|.+ +.++++.+||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 10 0111123699999999999999999999875421 1233334567888999999974 57899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||+|||||+. +|+||||||||+|||+.+++.+.++|++++++ + .|||+||||++++.++||
T Consensus 434 qrv~laral~~-------~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 434 HRVALAQVLIK-------EPRIVILDEPTGTMDPITKVDVTHSILKAREEME----------QTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred HHHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEeCCHHHHHHhCC
Confidence 99999999997 69999999999999999999999999999765 5 599999999999999999
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
|+ ++|++|++++.|++.++.
T Consensus 497 ~i------------------------------~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 497 RA------------------------------ALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred EE------------------------------EEEECCEEEEECCHHHHH
Confidence 88 999999999999776653
No 234
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=393.66 Aligned_cols=225 Identities=32% Similarity=0.479 Sum_probs=202.4
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..++++++|++|+||+.++|++|||++.+||++||+|.||||||||+|+|+|.++||+|+|+++|+..... +..+....
T Consensus 5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~-sp~~A~~~ 83 (500)
T COG1129 5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFS-SPRDALAA 83 (500)
T ss_pred ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCC-CHHHHHhC
Confidence 34689999999999999999999999999999999999999999999999999999999999999987643 34444455
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcC---CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.|+.|+|+.+|+|++||.||+.++..... ..++.+..+++.++|+.+++....+.++.+||.||||.|+|||||..
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~- 162 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF- 162 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc-
Confidence 79999999999999999999987754322 25778889999999999999644899999999999999999999987
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+++|||||||||+|+....+.+++++++|+++| .++|+|||+|+++.++||||
T Consensus 163 ------~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G----------v~ii~ISHrl~Ei~~i~Dri----------- 215 (500)
T COG1129 163 ------DARVLILDEPTAALTVKETERLFDLIRRLKAQG----------VAIIYISHRLDEVFEIADRI----------- 215 (500)
T ss_pred ------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCcHHHHHHhcCEE-----------
Confidence 599999999999999999999999999999988 69999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecc-ccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMT-HEF 360 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~-~~~ 360 (382)
.||++|+.+...+. .++
T Consensus 216 -------------------tVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 216 -------------------TVLRDGRVVGTRPTAAET 233 (500)
T ss_pred -------------------EEEeCCEEeeecccccCC
Confidence 89999999998873 554
No 235
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.3e-47 Score=360.55 Aligned_cols=200 Identities=35% Similarity=0.559 Sum_probs=175.8
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .+.+|+||++.+|+.+|++|
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-------~~~~~v~q~~~l~~~~tv~e 73 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-------PDRMVVFQNYSLLPWLTVRE 73 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-------hhheEEecCcccCCCCCHHH
Confidence 57999999999999999999999999999999999999999999999864321 12589999999999899999
Q ss_pred HHHhhHhh-cCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 187 NVGFLLYE-NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 187 ni~~~~~~-~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
|+.+.... .......+..+++.++++.+|+.+..++++.+||||||||++|||||+. +|++|||||||+|||
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-------~p~lllLDEPt~gLD 146 (230)
T TIGR01184 74 NIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSI-------RPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHc-------CCCEEEEcCCCcCCC
Confidence 99886421 1223444556678899999999988999999999999999999999997 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEE
Q 016804 266 PIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLI 344 (382)
Q Consensus 266 ~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 344 (382)
+.++..+.+.|++++++ + .|+|++|||++++.++|||+ +
T Consensus 147 ~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v------------------------------~ 186 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEEHR----------VTVLMVTHDVDEALLLSDRV------------------------------V 186 (230)
T ss_pred HHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE------------------------------E
Confidence 99999999999999775 4 59999999999999999988 9
Q ss_pred EEeCCeEEEEeccccc
Q 016804 345 FLYEGKIVWQGMTHEF 360 (382)
Q Consensus 345 ~l~~G~i~~~g~~~~~ 360 (382)
+|++|+++..|...++
T Consensus 187 ~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 187 MLTNGPAANIGQILEV 202 (230)
T ss_pred EEeCCcEecccCceec
Confidence 9999999998866554
No 236
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-47 Score=356.45 Aligned_cols=205 Identities=32% Similarity=0.475 Sum_probs=174.1
Q ss_pred eEEEEeEEEEeCC-------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC--CE--ECCCCC
Q 016804 91 LIDCRNVYKSFGE-------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR--GR--KRAGLI 159 (382)
Q Consensus 91 ~I~~~nvs~~yg~-------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~--G~--~i~~~~ 159 (382)
||+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++ |. ++....
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5899999999962 479999999999999999999999999999999999999999999998 42 332211
Q ss_pred Chh--hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHH
Q 016804 160 SDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 160 ~~~--~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVa 236 (382)
... ...+.+++|+||++.+++.+|++||+.+..... +.......+++.++++.+|+.+ ..++++.+||||||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 111 111235999999999999999999998754322 2334445667888999999976 458899999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||||+. +|++|||||||++||+.++..+.+.|++++++| .|+|++||+++++..+|||+
T Consensus 160 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~vsH~~~~~~~~~d~i 219 (224)
T TIGR02324 160 IARGFIA-------DYPILLLDEPTASLDAANRQVVVELIAEAKARG----------AALIGIFHDEEVRELVADRV 219 (224)
T ss_pred HHHHHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhccee
Confidence 9999997 699999999999999999999999999997765 59999999999999999988
No 237
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-47 Score=399.83 Aligned_cols=222 Identities=32% Similarity=0.479 Sum_probs=188.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECC-----------------
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRG----------------- 152 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G----------------- 152 (382)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999999889999999999999999999999999999999999997 79999999972
Q ss_pred ------EECCC----CC--Chh--hhccceEEEEecC-CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc
Q 016804 153 ------RKRAG----LI--SDE--EISGLRIGLVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217 (382)
Q Consensus 153 ------~~i~~----~~--~~~--~~~~~~Ig~V~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~ 217 (382)
.++.. .. ... ...+.+++|+||+ +.+|+.+|++||+.++.... +.+..+..+++.++++.+||+
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCh
Confidence 22110 00 010 1112359999998 67888899999999865322 244455567789999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEE
Q 016804 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASY 296 (382)
Q Consensus 218 ~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~ti 296 (382)
+..++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|+++.++ | .||
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tv 222 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAK-------EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG----------ISM 222 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhc-------CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEE
Confidence 88899999999999999999999997 69999999999999999999999999999764 5 599
Q ss_pred EEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 297 VVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 297 IivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
|+||||++.+.++|||+ ++|++|++++.|++.++.
T Consensus 223 iivtHd~~~~~~~~d~i------------------------------~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 223 VLTSHWPEVIEDLSDKA------------------------------IWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EEEeCCHHHHHHhcCEE------------------------------EEEeCCEEeeecCHHHHH
Confidence 99999999999999988 999999999988776653
No 238
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-47 Score=379.01 Aligned_cols=244 Identities=31% Similarity=0.518 Sum_probs=216.7
Q ss_pred CCCcceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 86 DDGDVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~-----------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
.+..+.++.+||.+.|.- ..++++|||++++||.+||||.||||||||-++|.+|++++ |+|.|+|++
T Consensus 271 ~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~ 349 (534)
T COG4172 271 EDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQD 349 (534)
T ss_pred CCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcc
Confidence 356678999999999941 25899999999999999999999999999999999999887 999999999
Q ss_pred CCCCCChhh-hccceEEEEecCCC--CCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCCh
Q 016804 155 RAGLISDEE-ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKG-VEDRLPSELSG 229 (382)
Q Consensus 155 i~~~~~~~~-~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSG 229 (382)
+..+....- ..+.++-.|||||+ |.|.|||.+-|..++..+. ..+..+..+++.++|+.+||+. -.+|||+++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 987644332 22446999999985 8999999999999987665 5678888999999999999974 68999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
|||||+|||||++. +|++++||||||+||...+.++.++|++|.++.. .++++||||+..++.+
T Consensus 430 GQRQRIAIARAliL-------kP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~---------LsYLFISHDL~VvrAl 493 (534)
T COG4172 430 GQRQRIAIARALIL-------KPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG---------LSYLFISHDLAVVRAL 493 (534)
T ss_pred chhhHHHHHHHHhc-------CCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhC---------CeEEEEeccHHHHHHh
Confidence 99999999999995 7999999999999999999999999999987742 5999999999999999
Q ss_pred hchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 310 VDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 310 aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
||+| +||++||||++|++++++ ++++++++++.....
T Consensus 494 ~~~v------------------------------iVm~~GkiVE~G~~~~if~~P~~~YT~~L~~aa~ 531 (534)
T COG4172 494 CHRV------------------------------IVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAF 531 (534)
T ss_pred hceE------------------------------EEEeCCEEeeeCCHHHHhcCCCcHHHHHHHHhhc
Confidence 9988 999999999999999865 688999999886543
No 239
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-48 Score=429.10 Aligned_cols=215 Identities=39% Similarity=0.614 Sum_probs=187.5
Q ss_pred eEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~---~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.|+++||+|+|+.+ ++|+|+||+|++|+++||||||||||||++++|.|+++|++|+|++||.|+..+..+ |++ .
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~-~lr-~ 427 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLK-WLR-S 427 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchH-HHH-h
Confidence 49999999999865 599999999999999999999999999999999999999999999999998876443 332 3
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVa 236 (382)
+||+|+|+|.||. .||+|||.|+. ++..++++.++++..+..++..+.| .+||||||||+|
T Consensus 428 ~iglV~QePvlF~-~tI~eNI~~G~-------~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIA 499 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFA-TTIRENIRYGK-------PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIA 499 (1228)
T ss_pred hcCeeeechhhhc-ccHHHHHhcCC-------CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHH
Confidence 7999999999996 69999999863 2233455677788777776666665 579999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||++ +|+|||||||||+||+++++.+++.|+++.+ | +|.|+|+|+++++++ ||+|
T Consensus 500 IARalv~-------~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-g----------rTTivVaHRLStIrn-aD~I--- 557 (1228)
T KOG0055|consen 500 IARALVR-------NPKILLLDEATSALDAESERVVQEALDKASK-G----------RTTIVVAHRLSTIRN-ADKI--- 557 (1228)
T ss_pred HHHHHHh-------CCCEEEecCcccccCHHHHHHHHHHHHHhhc-C----------CeEEEEeeehhhhhc-cCEE---
Confidence 9999998 5999999999999999999999999998865 4 499999999999998 7766
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
+||++|+|+|.|+++|+....
T Consensus 558 ---------------------------~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 558 ---------------------------AVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred ---------------------------EEEECCEEEEecCHHHHHhcc
Confidence 999999999999888876544
No 240
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-47 Score=353.06 Aligned_cols=199 Identities=32% Similarity=0.448 Sum_probs=174.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .. .+.+++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~--~~~~~~ 77 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DE--YHQDLL 77 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HH--hhhheE
Confidence 589999999999889999999999999999999999999999999999999999999999999875321 11 223699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|++|++.+++.+|+.||+.+....+ .. ...+++.++++.+|+.+..++++.+||||||||++|||||++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~-~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~------- 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLH-GP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLT------- 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhc-Cc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998865322 11 224567889999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+.+|+
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~i~~~~~~~ 199 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQG----------GMVILTTHQDLPVASDKVRK 199 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecChhhhccCCceE
Confidence 699999999999999999999999999997665 49999999999998865555
No 241
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.6e-47 Score=411.35 Aligned_cols=284 Identities=24% Similarity=0.388 Sum_probs=221.5
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+....+.+...+..++.++..+++.. .....++...+|+......|......... .
T Consensus 393 t~G~lia~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~~~-------------------~ 448 (694)
T TIGR01846 393 SPGQLVAFNMLAGRVTQPVLRLAQLW-----QDFQQTGIALERLGDILNSPTEPRSAGLA-------------------A 448 (694)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCccCCCCC-------------------C
Confidence 34555566666667788888777776 67788899999999988776432110000 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
.......|+++||+|+|++ +++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|++||.++.......
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHH
Confidence 0011124999999999953 56999999999999999999999999999999999999999999999999987653333
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGq 231 (382)
. +.+|+||+|++.+|+ .|++||+.++. ...+. +++.++++.++++++.++. ..+|||||
T Consensus 529 -~-r~~i~~v~q~~~lf~-~ti~eNi~~~~---~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 529 -L-RRQMGVVLQENVLFS-RSIRDNIALCN---PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred -H-HHhCeEEccCCeehh-hhHHHHHhcCC---CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 2 236999999999998 59999998742 11222 3455667777766554433 46899999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||++|||||++ +|++|||||||++||+.+++.+.+.|+++.+ + +|+|++||+++.+.. ||
T Consensus 599 ~qri~lARall~-------~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~~~~~~~-~d 659 (694)
T TIGR01846 599 RQRIAIARALVG-------NPRILIFDEATSALDYESEALIMRNMREICR-G----------RTVIIIAHRLSTVRA-CD 659 (694)
T ss_pred HHHHHHHHHHHh-------CCCEEEEECCCcCCCHHHHHHHHHHHHHHhC-C----------CEEEEEeCChHHHHh-CC
Confidence 999999999997 5999999999999999999999999999853 3 599999999999865 77
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++ ++|++|+|+++|+.+++... ++...+++
T Consensus 660 ~i------------------------------i~l~~G~i~~~g~~~~l~~~-~~~y~~l~ 689 (694)
T TIGR01846 660 RI------------------------------IVLEKGQIAESGRHEELLAL-QGLYARLW 689 (694)
T ss_pred EE------------------------------EEEeCCEEEEeCCHHHHHHc-CChHHHHH
Confidence 77 99999999999977777644 34445544
No 242
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-48 Score=360.32 Aligned_cols=211 Identities=30% Similarity=0.554 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ... .+.+++
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i~ 80 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS-RKS-LRSMIG 80 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC-HHH-HhhhEE
Confidence 789999999975 57999999999999999999999999999999999999999999999999865321 112 233599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHc-----------CCcccccCCCCCCChHHHHHHHHHH
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-----------GLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~-----------gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
|+||++.+|+. |++||+.+.... .... .+.++++.+ ++....++++.+|||||||||+|||
T Consensus 81 ~~~q~~~~~~~-tv~~~~~~~~~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~ 152 (229)
T cd03254 81 VVLQDTFLFSG-TIMENIRLGRPN---ATDE----EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIAR 152 (229)
T ss_pred EecCCchhhhh-HHHHHHhccCCC---CCHH----HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHH
Confidence 99999998885 999999875311 1111 223333333 4444456677999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.+.|+++. ++ .|+|++||+++++. .||++
T Consensus 153 al~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tii~~sh~~~~~~-~~d~i------ 207 (229)
T cd03254 153 AMLR-------DPKILILDEATSNIDTETEKLIQEALEKLM-KG----------RTSIIIAHRLSTIK-NADKI------ 207 (229)
T ss_pred HHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CC----------CEEEEEecCHHHHh-hCCEE------
Confidence 9997 699999999999999999999999999985 45 59999999999986 48877
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+.+++.
T Consensus 208 ------------------------~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 208 ------------------------LVLDDGKIIEEGTHDELL 225 (229)
T ss_pred ------------------------EEEeCCeEEEeCCHHHHH
Confidence 999999999988766654
No 243
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7e-47 Score=395.98 Aligned_cols=277 Identities=28% Similarity=0.428 Sum_probs=211.8
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+......+...+..++.++..+.+.. .....+....+|+......|....... .. +
T Consensus 256 t~g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-----------------~~--~ 311 (544)
T TIGR01842 256 TPGMMIAGSILVGRALAPIDGAIGGW-----KQFSGARQAYKRLNELLANYPSRDPAM-----------------PL--P 311 (544)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCccccCCC-----------------CC--C
Confidence 33444555555566677777776666 677888889999999887654321000 00 1
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
. ....|+++||+++|++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.......
T Consensus 312 ~--~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 312 E--PEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred C--CCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 1 1124999999999964 57999999999999999999999999999999999999999999999999987543222
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHH-----HHHHHHHc--CCcccccCCCCCCChHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL-----VKENLAAV--GLKGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-----v~~~L~~~--gL~~~~~~~~~~LSGGqrQRV 235 (382)
.+.+|+||||++.+|+. |++||+.++. ...++++..+. +.+.++.+ |++........+||||||||+
T Consensus 390 --~~~~i~~v~q~~~lf~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl 463 (544)
T TIGR01842 390 --FGKHIGYLPQDVELFPG-TVAENIARFG---ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRI 463 (544)
T ss_pred --HhhheEEecCCcccccc-cHHHHHhccC---CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHH
Confidence 23369999999999985 9999997532 11233332221 12233333 444445555688999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||++ +|++|||||||++||+.++..+.+.|+++.+++ +|+|++||+++.+. .||++
T Consensus 464 ~lARall~-------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~----------~tvi~ith~~~~~~-~~d~i-- 523 (544)
T TIGR01842 464 ALARALYG-------DPKLVVLDEPNSNLDEEGEQALANAIKALKARG----------ITVVVITHRPSLLG-CVDKI-- 523 (544)
T ss_pred HHHHHHhc-------CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCC----------CEEEEEeCCHHHHH-hCCEE--
Confidence 99999997 599999999999999999999999999987555 49999999998764 57776
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+.+++.
T Consensus 524 ----------------------------~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 524 ----------------------------LVLQDGRIARFGERDEVL 541 (544)
T ss_pred ----------------------------EEEECCEEEeeCCHHHHh
Confidence 999999999999766653
No 244
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-49 Score=358.06 Aligned_cols=233 Identities=31% Similarity=0.469 Sum_probs=209.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|+++.+|+++|++|++|.+++|||||||||||||.++++|+++++|+|+++|.++..+.+.. +++ +++
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~-LAk-~lS 78 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE-LAK-KLS 78 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHH-HHH-HHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998875444 332 589
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
.+-|+..+...+||+|-+.|+.+.+. +....+.++.+.++++.++|+++.+|+..+||||||||.-||+.|++|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd----- 153 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD----- 153 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc-----
Confidence 99999998888999999999976553 334556678899999999999999999999999999999999999985
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
.+.++||||.++||.....++++.|++++++-+ +||++|-||++++..++|+|
T Consensus 154 --TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~---------KtiviVlHDINfAS~YsD~I---------------- 206 (252)
T COG4604 154 --TDYVLLDEPLNNLDMKHSVQIMKILRRLADELG---------KTIVVVLHDINFASCYSDHI---------------- 206 (252)
T ss_pred --CcEEEecCcccccchHHHHHHHHHHHHHHHHhC---------CeEEEEEecccHHHhhhhhe----------------
Confidence 999999999999999999999999999998842 69999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
+-|++|+++.+|+++|+..+ ..+.+++.
T Consensus 207 --------------VAlK~G~vv~~G~~~eii~~--~~L~eiyd 234 (252)
T COG4604 207 --------------VALKNGKVVKQGSPDEIIQP--EILSEIYD 234 (252)
T ss_pred --------------eeecCCEEEecCCHHHhcCH--HHHHHHhc
Confidence 99999999999999998743 44555543
No 245
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2e-47 Score=363.21 Aligned_cols=222 Identities=27% Similarity=0.382 Sum_probs=184.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
++++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|+++|+++.... .... +..++|
T Consensus 1 ~~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~-~~~~-~~~i~~ 73 (248)
T PRK03695 1 MQLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWS-AAEL-ARHRAY 73 (248)
T ss_pred Ccccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCC-HHHH-hhheEE
Confidence 357888885 38999999999999999999999999999999999986 5999999999875432 2222 225999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+++.+|+++|+.+.... .....+..+++.++++.+++.+..++++.+||||||||++|||||+.+++....+
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~ 151 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPA 151 (248)
T ss_pred ecccCccCCCccHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCC
Confidence 99999888789999999875321 1233344567889999999998889999999999999999999998500000014
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|+++.+++ .|+|++||+++++.++||++
T Consensus 152 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~----------~tvi~~sH~~~~~~~~~d~i------------------ 203 (248)
T PRK03695 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQQG----------IAVVMSSHDLNHTLRHADRV------------------ 203 (248)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEE------------------
Confidence 79999999999999999999999999998765 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+.+++..
T Consensus 204 ------------~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 204 ------------WLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ------------EEEECCEEEEECCHHHHhC
Confidence 9999999999997777653
No 246
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4e-47 Score=362.68 Aligned_cols=203 Identities=32% Similarity=0.530 Sum_probs=179.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-------------~~i 69 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-------------LRI 69 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-------------cCE
Confidence 4799999999999888999999999999999999999999999999999999999999999862 159
Q ss_pred EEEecCCCCCCC--CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 170 GLVFQSAALFDS--LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 170 g~V~Q~~~l~~~--lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|+||++.+++. .|+.+|+.+. .... .+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~---- 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR----PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLN---- 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc----cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhc----
Confidence 999999988765 3788877542 1111 2346788999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++|||++++.++|||+
T Consensus 138 ---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tiiivsH~~~~i~~~~d~i------------- 191 (251)
T PRK09544 138 ---RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD----------CAVLMVSHDLHLVMAKTDEV------------- 191 (251)
T ss_pred ---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999775 5 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++ ++++.|+++++.
T Consensus 192 -----------------~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 192 -----------------LCLNH-HICCSGTPEVVS 208 (251)
T ss_pred -----------------EEECC-ceEeeCCHHHHh
Confidence 88864 799999887765
No 247
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.4e-47 Score=351.57 Aligned_cols=195 Identities=31% Similarity=0.459 Sum_probs=173.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... . .. .+.+++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~-~~-~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-R-DS-IARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-c-HH-hhhheEE
Confidence 4789999999988999999999999999999999999999999999999999999999999986432 1 11 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
++|++.+++.+|++||+.+... .. ..+++.++++.+++.+..++++.+||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~----~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 143 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHA----DH---SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS-------G 143 (201)
T ss_pred eccccccCCCcCHHHHHHhhcc----cc---cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhc-------C
Confidence 9999999888999999987431 11 23457889999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||++||+.++..+.+.|+++.+++ .|+|++|||......+|+|+
T Consensus 144 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~sH~~~~~~~~~~~~ 195 (201)
T cd03231 144 RPLWILDEPTTALDKAGVARFAEAMAGHCARG----------GMVVLTTHQDLGLSEAGARE 195 (201)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCchhhhhcccee
Confidence 99999999999999999999999999987765 59999999999999999988
No 248
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.7e-47 Score=359.92 Aligned_cols=216 Identities=33% Similarity=0.551 Sum_probs=176.9
Q ss_pred EEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 92 IDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 92 I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... .... +.+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN-LRWL-RSQ 78 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcC-HHHH-Hhh
Confidence 478999999964 46999999999999999999999999999999999999999999999999864321 2221 235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHH-----HHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL-----VKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-----v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
++|+||++.+|+ .|++||+.+.... ...++..+. +.++++.+ ++....++.+.+|||||||||+|||||
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 79 IGLVSQEPVLFD-GTIAENIRYGKPD---ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EEEECCchhhhh-hhHHHHhhccCCC---CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 999999998887 6999999875321 112221111 12233333 555567788899999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.+.|+++. ++ .|+|++||+++++. +||++
T Consensus 155 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g----------~~vi~~sh~~~~~~-~~d~v-------- 207 (238)
T cd03249 155 LR-------NPKILLLDEATSALDAESEKLVQEALDRAM-KG----------RTTIVIAHRLSTIR-NADLI-------- 207 (238)
T ss_pred hc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCCHHHHh-hCCEE--------
Confidence 97 699999999999999999999999999986 55 59999999999997 78877
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+.+++..
T Consensus 208 ----------------------~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 208 ----------------------AVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred ----------------------EEEECCEEEEeCCHHHHhh
Confidence 9999999999997766653
No 249
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-47 Score=395.48 Aligned_cols=222 Identities=21% Similarity=0.378 Sum_probs=188.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..++|+++|+++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.
T Consensus 262 ~~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~-~~~~~~~~ 338 (510)
T PRK09700 262 HETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPR-SPLDAVKK 338 (510)
T ss_pred CCcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCC-CHHHHHHC
Confidence 346899999999874 489999999999999999999999999999999999999999999999987432 12111223
Q ss_pred eEEEEecC---CCCCCCCCHHHHHHhhHhhc----C---C-CCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHH
Q 016804 168 RIGLVFQS---AALFDSLTVRENVGFLLYEN----S---K-MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 168 ~Ig~V~Q~---~~l~~~lTV~eni~~~~~~~----~---~-~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRV 235 (382)
+|||+||+ +.+++.+||+||+.++.... . + .......+.+.++++.+++. +..++++.+|||||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence 69999998 46888899999998753210 0 1 12233345678899999997 788999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||+. +|+||||||||+|||+.++..+.++|++++++| .|||+||||++++..+|||+
T Consensus 419 ~lAral~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvi~vsHd~~~~~~~~d~i-- 479 (510)
T PRK09700 419 LISKWLCC-------CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG----------KVILMVSSELPEIITVCDRI-- 479 (510)
T ss_pred HHHHHHhc-------CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHhhCCEE--
Confidence 99999997 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|++|++++.+...+
T Consensus 480 ----------------------------~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 480 ----------------------------AVFCEGRLTQILTNRD 495 (510)
T ss_pred ----------------------------EEEECCEEEEEecCcc
Confidence 9999999998886534
No 250
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-47 Score=355.38 Aligned_cols=216 Identities=33% Similarity=0.547 Sum_probs=177.0
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ... .+..++
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~-~~~-~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT-LDS-LRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC-HHH-HHhhEE
Confidence 47899999996 567999999999999999999999999999999999999999999999999875432 111 123599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHH-----HHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
|+||++.+|+ .|+.||+.++... .......+ .+.+.++.+ +++...++.+.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 79 VVPQDTVLFN-DTIGYNIRYGRPD---ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred EECCCChhhc-chHHHHHhhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999986 6999999875321 12222111 122233333 44555667789999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|++|||||||+|||+.++..+.++|.++++ + .|+|++||+++.+.. |||+
T Consensus 155 -------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~-~d~~---------- 205 (236)
T cd03253 155 -------NPPILLLDEATSALDTHTEREIQAALRDVSK-G----------RTTIVIAHRLSTIVN-ADKI---------- 205 (236)
T ss_pred -------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHHh-CCEE----------
Confidence 6999999999999999999999999999876 5 599999999999965 8877
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+.+++..
T Consensus 206 --------------------~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 206 --------------------IVLKDGRIVERGTHEELLA 224 (236)
T ss_pred --------------------EEEECCEEEeeCCHHHHhh
Confidence 9999999999997777654
No 251
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.2e-47 Score=394.92 Aligned_cols=214 Identities=21% Similarity=0.276 Sum_probs=185.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ..... +.++|
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~-~~~~~-~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRL-SFEQL-QKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccC-CHHHH-HHHhc
Confidence 69999999999988899999999999999999999999999999999999999999999999775432 11221 22599
Q ss_pred EEecCCCC--C-C-----CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 171 LVFQSAAL--F-D-----SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 171 ~V~Q~~~l--~-~-----~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
|+||++.+ + + .+|+++|+.+. .+..+++.++++.+||.+..++++.+|||||||||+|||||+
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 151 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALM 151 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99998653 2 1 46888887542 122456788999999998899999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||+|||+.++..+.++|++++++| .|+|++|||++++.++|||+
T Consensus 152 ~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tvii~tH~~~~~~~~~d~v--------- 205 (490)
T PRK10938 152 S-------EPDLLILDEPFDGLDVASRQQLAELLASLHQSG----------ITLVLVLNRFDEIPDFVQFA--------- 205 (490)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CeEEEEeCCHHHHHhhCCEE---------
Confidence 7 699999999999999999999999999998765 59999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++..|+++++..
T Consensus 206 ---------------------~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 206 ---------------------GVLADCTLAETGEREEILQ 224 (490)
T ss_pred ---------------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998777643
No 252
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.1e-47 Score=393.77 Aligned_cols=224 Identities=23% Similarity=0.386 Sum_probs=190.2
Q ss_pred cceEEEEeEEEEe---CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEECCCCCChhhh
Q 016804 89 DVLIDCRNVYKSF---GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 89 ~~~I~~~nvs~~y---g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.++|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++... .....
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~-~~~~~ 333 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR-NPAQA 333 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC-CHHHH
Confidence 4589999999999 346799999999999999999999999999999999999995 899999999987432 12112
Q ss_pred ccceEEEEecCC---CCCCCCCHHHHHHhhHhh-cC---CCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHH
Q 016804 165 SGLRIGLVFQSA---ALFDSLTVRENVGFLLYE-NS---KMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 165 ~~~~Ig~V~Q~~---~l~~~lTV~eni~~~~~~-~~---~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVa 236 (382)
.+.+|||+||++ .+++.+||++|+.++... .. .......++.+.++++.+++.. ..++++.+|||||||||+
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 233699999996 588889999999875321 11 1223334566889999999974 689999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||+. +|++|||||||+|||+.++..++++|++++++| .|||++|||++++.++|||+
T Consensus 414 la~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviivsHd~~~~~~~~d~v--- 473 (500)
T TIGR02633 414 LAKMLLT-------NPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG----------VAIIVVSSELAEVLGLSDRV--- 473 (500)
T ss_pred HHHHHhh-------CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE---
Confidence 9999997 699999999999999999999999999998776 59999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++..++.+++
T Consensus 474 ---------------------------~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 474 ---------------------------LVIGEGKLKGDFVNHAL 490 (500)
T ss_pred ---------------------------EEEECCEEEEEEccccC
Confidence 99999999988865543
No 253
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.2e-46 Score=397.81 Aligned_cols=283 Identities=23% Similarity=0.366 Sum_probs=210.4
Q ss_pred chhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC
Q 016804 8 GSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDD 87 (382)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (382)
....+...+..++.++..+++.. .....++...+|+.+....|+....... . . ....
T Consensus 274 ~l~a~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~ri~~~~~~~~~~~~~~~------~----------~--~~~~ 330 (585)
T TIGR01192 274 EVIAFIGFANLLIGRLDQMSGFI-----TQIFEARAKLEDFFDLEDSVFQREEPAD------A----------P--ELPN 330 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccCCcc------C----------C--CCCC
Confidence 33344444445566666666555 4556677778888887766532110000 0 0 0001
Q ss_pred CcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 88 GDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
....|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....... . +
T Consensus 331 ~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~-~ 408 (585)
T TIGR01192 331 VKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES-L-R 408 (585)
T ss_pred CCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH-H-H
Confidence 1224999999999975 57999999999999999999999999999999999999999999999999976543222 2 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCC-----------cccccCCCCCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-----------KGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL-----------~~~~~~~~~~LSGGqrQRV 235 (382)
..++||+|++.+|+ .|++||+.++. ...+.++ +.++++.+++ +.........||||||||+
T Consensus 409 ~~i~~v~q~~~lf~-~ti~~Ni~~~~---~~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl 480 (585)
T TIGR01192 409 KSIATVFQDAGLFN-RSIRENIRLGR---EGATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL 480 (585)
T ss_pred hheEEEccCCccCc-ccHHHHHhcCC---CCCCHHH----HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 36999999999997 59999998753 1123333 3334444443 3344455678999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||++ +|++|||||||++||+.+++.+.+.|+++.+ + +|+|+|||+++.+.. ||+|
T Consensus 481 ~lARall~-------~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvI~isH~~~~~~~-~d~i-- 539 (585)
T TIGR01192 481 AIARAILK-------NAPILVLDEATSALDVETEARVKNAIDALRK-N----------RTTFIIAHRLSTVRN-ADLV-- 539 (585)
T ss_pred HHHHHHhc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEEcChHHHHc-CCEE--
Confidence 99999997 6999999999999999999999999998854 3 599999999999854 7766
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+.+++.... +...++..
T Consensus 540 ----------------------------~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~ 568 (585)
T TIGR01192 540 ----------------------------LFLDQGRLIEKGSFQELIQKD-GRFYKLLR 568 (585)
T ss_pred ----------------------------EEEECCEEEEECCHHHHHHCC-ChHHHHHH
Confidence 999999999999777766443 34444433
No 254
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-47 Score=390.82 Aligned_cols=279 Identities=29% Similarity=0.439 Sum_probs=215.3
Q ss_pred hHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcc
Q 016804 11 LFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDV 90 (382)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (382)
++.+++|..+..|..++. + ...-....-.+.+|+..+...|+...-.+. +.+..+.
T Consensus 280 ~~ll~~f~~~eaf~~L~~-~---A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~-------------------~~~~~~~- 335 (573)
T COG4987 280 LALLVIFAALEAFEPLAP-G---AFQHLGQVIASARRLNDILDQKPEVTFPDE-------------------QTATTGQ- 335 (573)
T ss_pred HHHHHHHHHHHHHhhhcc-h---hHHHhhHHHHHHHHHhhhccCCcccCCCcc-------------------ccCCccc-
Confidence 333444555555655443 1 112234455666777777666642221110 0111222
Q ss_pred eEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++++||+|+|++. ++|+|+||++++||.+||+|+||||||||+++|+|.++|++|+|.++|.++..+..... +..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~--~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL--RET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhH--HHH
Confidence 69999999999765 49999999999999999999999999999999999999999999999999877643322 225
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaI 237 (382)
|++++|.+.+|.. |+++|+.+.. .. ..++.+.++++.+||+++....| ..||||||||++|
T Consensus 414 i~vl~Qr~hlF~~-Tlr~NL~lA~---~~----AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAl 485 (573)
T COG4987 414 ISVLTQRVHLFSG-TLRDNLRLAN---PD----ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL 485 (573)
T ss_pred HhhhccchHHHHH-HHHHHHhhcC---CC----CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHH
Confidence 9999999999985 9999998742 22 23455778899999987766654 7899999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||+|++ +.+++||||||.|||+.++++++++|.+-.+. +|+|||||++..+.+ ||
T Consensus 486 AR~LL~-------dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~-----------kTll~vTHrL~~le~-~d------ 540 (573)
T COG4987 486 ARALLH-------DAPLWLLDEPTEGLDPITERQVLALLFEHAEG-----------KTLLMVTHRLRGLER-MD------ 540 (573)
T ss_pred HHHHHc-------CCCeEEecCCcccCChhhHHHHHHHHHHHhcC-----------CeEEEEecccccHhh-cC------
Confidence 999998 49999999999999999999999999987653 499999999999886 45
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
||+||++||++++|+.+++.. .++...++++
T Consensus 541 ------------------------rIivl~~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 541 ------------------------RIIVLDNGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred ------------------------EEEEEECCeeeecCCHHhhhc-cccHHHHHhc
Confidence 459999999999998888775 5666666654
No 255
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.9e-47 Score=355.50 Aligned_cols=202 Identities=33% Similarity=0.472 Sum_probs=176.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
+.++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------------- 88 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------------- 88 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------------
Confidence 778999999999999999999999999999999999999999999999999999999999987421
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
..+...+++.+||+||+.+..... +....+..+++.++++.+++.+..++++.+||||||||++|||||+. +
T Consensus 89 ~~~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~-------~ 160 (224)
T cd03220 89 LGLGGGFNPELTGRENIYLNGRLL-GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATAL-------E 160 (224)
T ss_pred hcccccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 111223456789999998865322 23444555677889999999998999999999999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.+.|+++++++ .|+|++||+++++..+|||+
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i------------------ 212 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQG----------KTVILVSHDPSSIKRLCDRA------------------ 212 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE------------------
Confidence 99999999999999999999999999998765 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEe
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 213 ------------~~l~~G~i~~~g 224 (224)
T cd03220 213 ------------LVLEKGKIRFDG 224 (224)
T ss_pred ------------EEEECCEEEecC
Confidence 999999998764
No 256
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=8.5e-47 Score=396.63 Aligned_cols=283 Identities=25% Similarity=0.397 Sum_probs=213.3
Q ss_pred cchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 016804 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (382)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (382)
.....+...+..+..++..+.+.. .....++...+|+......|.... ....+ . . .+.
T Consensus 275 g~~~~~~~~~~~~~~pl~~~~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~-~~~~~-----~--------~---~~~ 332 (576)
T TIGR02204 275 GTLGQFVFYAVMVAGSIGTLSEVW-----GELQRAAGAAERLIELLQAEPDIK-APAHP-----K--------T---LPV 332 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCcCC-CCCCC-----c--------c---CCc
Confidence 333444444455566776666655 666778888889988877653211 00000 0 0 000
Q ss_pred CCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 87 DGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.....|+++||+++|++ +.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|++||.++.......
T Consensus 333 ~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~- 411 (576)
T TIGR02204 333 PLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE- 411 (576)
T ss_pred CCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH-
Confidence 11224999999999964 56999999999999999999999999999999999999999999999999987543222
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMK 232 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqr 232 (382)
. +.+|+|+||++.+|+ .|++||+.++. ...+ ++++.++++.+++.++.++. ...||||||
T Consensus 412 ~-~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~---~~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 412 L-RARMALVPQDPVLFA-ASVMENIRYGR---PDAT----DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred H-HHhceEEccCCcccc-ccHHHHHhcCC---CCCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 2 236999999999997 59999998742 1122 23466677777775544433 357999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
||++||||+++ +|++||||||||+||+.+++.+++.|+++.+ + +|+|+|||+++.+. .|||
T Consensus 483 Qrl~laRal~~-------~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~----------~t~IiitH~~~~~~-~~d~ 543 (576)
T TIGR02204 483 QRIAIARAILK-------DAPILLLDEATSALDAESEQLVQQALETLMK-G----------RTTLIIAHRLATVL-KADR 543 (576)
T ss_pred HHHHHHHHHHh-------CCCeEEEeCcccccCHHHHHHHHHHHHHHhC-C----------CEEEEEecchHHHH-hCCE
Confidence 99999999997 5999999999999999999999999999854 3 59999999998875 5776
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHH
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQF 371 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~ 371 (382)
+ ++|++|++++.|+.+++... ++..+++
T Consensus 544 v------------------------------i~l~~g~~~~~g~~~~l~~~-~~~~~~l 571 (576)
T TIGR02204 544 I------------------------------VVMDQGRIVAQGTHAELIAK-GGLYARL 571 (576)
T ss_pred E------------------------------EEEECCEEEeeecHHHHHHc-CChHHHH
Confidence 6 99999999999987776543 3333443
No 257
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.5e-47 Score=368.20 Aligned_cols=220 Identities=27% Similarity=0.472 Sum_probs=187.8
Q ss_pred EEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~y--g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+++| ++..+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+|+|.++... ..... +.+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~-~~~~l-r~~i 79 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV-PLQKW-RKAF 79 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC-CHHHH-hhhE
Confidence 8899999999 45679999999999999999999999999999999999998 789999999987643 22222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCC-----------CChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-----------LSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~-----------LSGGqrQRVaIA 238 (382)
+|+||++.+|+. |+++|+.... .... +++.++++.+||.++.+++|.. ||||||||++||
T Consensus 80 ~~v~q~~~lf~~-tv~~nl~~~~----~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~La 150 (275)
T cd03289 80 GVIPQKVFIFSG-TFRKNLDPYG----KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLA 150 (275)
T ss_pred EEECCCcccchh-hHHHHhhhcc----CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 999999999984 9999996321 1222 3467788999999989999977 999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|+||||||||++||+.++..+++.|+++.+ + +|||+|||+++++.. ||||
T Consensus 151 Rall~-------~p~illlDEpts~LD~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~i~~-~dri----- 206 (275)
T cd03289 151 RSVLS-------KAKILLLDEPSAHLDPITYQVIRKTLKQAFA-D----------CTVILSEHRIEAMLE-CQRF----- 206 (275)
T ss_pred HHHhc-------CCCEEEEECccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEECCHHHHHh-CCEE-----
Confidence 99997 6999999999999999999999999998753 4 599999999999875 8877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++... ..+..+++.
T Consensus 207 -------------------------~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~ 235 (275)
T cd03289 207 -------------------------LVIEENKVRQYDSIQKLLNE-KSHFKQAIS 235 (275)
T ss_pred -------------------------EEecCCeEeecCCHHHHhhC-cHHHHHHHh
Confidence 99999999999999897753 355555554
No 258
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.4e-46 Score=396.08 Aligned_cols=273 Identities=19% Similarity=0.304 Sum_probs=209.0
Q ss_pred cchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 016804 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (382)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (382)
.....+...+..+..++..+++.. ..........+|+......|+... .. .. +..
T Consensus 254 g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~ll~~~~~~~-~~--------~~-----------~~~ 308 (569)
T PRK10789 254 GQLTSFVMYLGLMIWPMLALAWMF-----NIVERGSAAYSRIRAMLAEAPVVK-DG--------SE-----------PVP 308 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCccc-CC--------CC-----------CCC
Confidence 334444445555566766655554 566677788888888876653211 00 00 000
Q ss_pred CCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.....|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++....... .
T Consensus 309 ~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~-~ 387 (569)
T PRK10789 309 EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS-W 387 (569)
T ss_pred CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHH-H
Confidence 11123899999999964 56999999999999999999999999999999999999999999999999986543222 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc-----------CCCCCCChHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----------RLPSELSGGMKK 233 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~-----------~~~~~LSGGqrQ 233 (382)
+.+|+|++|++.+|+. |++||+.++. ...++ +++.++++.+++.++.. .....|||||||
T Consensus 388 -~~~i~~v~q~~~lf~~-ti~~Ni~~~~---~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 388 -RSRLAVVSQTPFLFSD-TVANNIALGR---PDATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred -HhheEEEccCCeeccc-cHHHHHhcCC---CCCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 3369999999999985 9999998753 11232 33455677776654433 334689999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||++ +|++|||||||++||+.+++.+.+.|+++.+ + +|+|++||+++.+.. ||++
T Consensus 459 Ri~lARall~-------~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tii~itH~~~~~~~-~d~i 519 (569)
T PRK10789 459 RISIARALLL-------NAEILILDDALSAVDGRTEHQILHNLRQWGE-G----------RTVIISAHRLSALTE-ASEI 519 (569)
T ss_pred HHHHHHHHhc-------CCCEEEEECccccCCHHHHHHHHHHHHHHhC-C----------CEEEEEecchhHHHc-CCEE
Confidence 9999999997 5999999999999999999999999999853 4 499999999988764 7766
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|+++++|+.+++...
T Consensus 520 ------------------------------~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 520 ------------------------------LVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred ------------------------------EEEeCCEEEEecCHHHHHHc
Confidence 99999999999977776543
No 259
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-46 Score=338.97 Aligned_cols=165 Identities=42% Similarity=0.752 Sum_probs=151.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~-~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EE-VKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--Hh-hhccEEE
Confidence 46899999998888999999999999999999999999999999999999999999999999875421 22 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|+.||+. ||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~~~-------------------------------------LS~G~~qrv~laral~~-------~ 113 (173)
T cd03230 78 LPEEPSLYENLTVRENLK-------------------------------------LSGGMKQRLALAQALLH-------D 113 (173)
T ss_pred EecCCccccCCcHHHHhh-------------------------------------cCHHHHHHHHHHHHHHc-------C
Confidence 999999998899999983 99999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||++||+.++..+.++|+++.++| .|+|++|||.+++..+||++
T Consensus 114 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~th~~~~~~~~~d~i 165 (173)
T cd03230 114 PELLILDEPTSGLDPESRREFWELLRELKKEG----------KTILLSSHILEEAERLCDRV 165 (173)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhCCEE
Confidence 99999999999999999999999999998775 49999999999999999988
No 260
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3e-47 Score=355.60 Aligned_cols=202 Identities=28% Similarity=0.469 Sum_probs=169.6
Q ss_pred CCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 87 DGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
....+|+++|++++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~ 85 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE-HKY 85 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC-HHH
Confidence 44568999999999975 36999999999999999999999999999999999999999999999998764321 111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHH-----HHHHHHHHHHc--CCcccccCCCCCCChHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI-----SELVKENLAAV--GLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~-----~~~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVa 236 (382)
.+.+++|+||++.+|+ .|++||+.++... ....+. ...+.++++.+ |+....++++.+|||||||||+
T Consensus 86 -~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 86 -LHSKVSLVGQEPVLFA-RSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred -HHhhEEEEecccHHHh-hhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 2336999999999887 5999999875421 111111 12246778888 8888889999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||||+. +|++|||||||++||+.++..+.+.|+++.+ + .|+|++|||++++.. |||+
T Consensus 161 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~i 218 (226)
T cd03248 161 IARALIR-------NPQVLILDEATSALDAESEQQVQQALYDWPE-R----------RTVLVIAHRLSTVER-ADQI 218 (226)
T ss_pred HHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-C----------CEEEEEECCHHHHHh-CCEE
Confidence 9999997 6999999999999999999999999999865 3 499999999999964 8877
No 261
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=339.39 Aligned_cols=170 Identities=46% Similarity=0.747 Sum_probs=152.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........+..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999875432101112346999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
++|++.+|+.+|++||+.+. ||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~-----------------------------------lS~G~~qr~~la~al~~-------~ 118 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG-----------------------------------LSGGQQQRVALARALAM-------D 118 (178)
T ss_pred EecCCccCCCCCHHHheeec-----------------------------------CCHHHHHHHHHHHHHHC-------C
Confidence 99999999889999998652 99999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+++||||||+|||+.++..+.++|++++++ + .|+|++|||++++..+||++
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i 171 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLG----------ITVVLVTHDLDEAARLADRV 171 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE
Confidence 9999999999999999999999999999876 4 59999999999999999987
No 262
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-46 Score=392.50 Aligned_cols=243 Identities=31% Similarity=0.448 Sum_probs=188.6
Q ss_pred hHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcc
Q 016804 11 LFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDV 90 (382)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (382)
.+...+..++.++..+.+.. ..........+|+......|+.....+ .+. . ... .+ ...
T Consensus 275 ~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~------~-----~~~--~~--~~~ 333 (529)
T TIGR02868 275 VLVLLPLAAFEAFAPLPAAA-----QALTRVRAAAERIEEVTGAKGPRPEGV-VPA------A-----GAL--GL--GKP 333 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCCcCCCC-CCC------C-----ccc--CC--CCc
Confidence 33434444566666655555 566677888899988887764211100 000 0 000 11 112
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++... .... +.+|
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~l--r~~i 410 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDEL--RRRI 410 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHH--Hhhe
Confidence 3999999999975 5699999999999999999999999999999999999999999999999998765 3332 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIA 238 (382)
+||||++.+|+. |++|||.++. ...+ ++++.++++.++++++.++.| ..||||||||++||
T Consensus 411 ~~V~Q~~~lF~~-TI~eNI~~g~---~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 411 SVFAQDAHLFDT-TVRDNLRLGR---PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred EEEccCcccccc-cHHHHHhccC---CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 999999999985 9999998852 1122 345778899999987766654 57999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
|||++ +|+|||||||||+||++++..+++.|.++.++ +|+|+|||++
T Consensus 483 Rall~-------~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~-----------~TvIiItHrl 529 (529)
T TIGR02868 483 RALLA-------DAPILLLDEPTEHLDAGTESELLEDLLAALSG-----------KTVVVITHHL 529 (529)
T ss_pred HHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCC-----------CEEEEEecCC
Confidence 99997 59999999999999999999999999987543 5999999984
No 263
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-46 Score=349.50 Aligned_cols=205 Identities=30% Similarity=0.484 Sum_probs=172.9
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .... +.++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i 80 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG-LHDL-RSRI 80 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC-HHHH-hhhE
Confidence 789999999964 47999999999999999999999999999999999999999999999999865432 1222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccc-----------cCCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~-----------~~~~~~LSGGqrQRVaIA 238 (382)
+|+||++.+++ .|++||+.+.. .... +++.++++.+++.+.. ++++.+||||||||++||
T Consensus 81 ~~~~q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~la 151 (221)
T cd03244 81 SIIPQDPVLFS-GTIRSNLDPFG----EYSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLA 151 (221)
T ss_pred EEECCCCcccc-chHHHHhCcCC----CCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHH
Confidence 99999999887 59999996531 1222 2345566666665544 468899999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||++||+.++..+.++|+++.+ + .|+|++||+++++.. ||++
T Consensus 152 ral~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~i----- 207 (221)
T cd03244 152 RALLR-------KSKILVLDEATASVDPETDALIQKTIREAFK-D----------CTVLTIAHRLDTIID-SDRI----- 207 (221)
T ss_pred HHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEeCCHHHHhh-CCEE-----
Confidence 99997 6999999999999999999999999999864 3 499999999999975 8877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
++|++|++++.|+
T Consensus 208 -------------------------~~l~~g~~~~~~~ 220 (221)
T cd03244 208 -------------------------LVLDKGRVVEFDS 220 (221)
T ss_pred -------------------------EEEECCeEEecCC
Confidence 9999999998774
No 264
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-46 Score=382.88 Aligned_cols=221 Identities=33% Similarity=0.513 Sum_probs=189.5
Q ss_pred EEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~~~-iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
|+++||+++|++++ +|+++||+|++||.+||+|+|||||||++|+|.++.+ ++|+|++||+++.....+.. |.-||
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~Sl--R~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESL--RQSIG 428 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHh--hhhee
Confidence 99999999998766 9999999999999999999999999999999999999 99999999999876543332 33599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHH
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALAR 239 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIAr 239 (382)
||||+..||+. ||.+||.++.. ..+ .+++.++++++|+++...+.| ..|||||||||+|||
T Consensus 429 ~VPQd~~LFnd-TIl~NI~YGn~---sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 429 VVPQDSVLFND-TILYNIKYGNP---SAS----DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred EeCCcccccch-hHHHHhhcCCC---CcC----HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 99999999985 99999998642 122 345778899999988777776 469999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
|+++| |+|+++|||||+||.++++++.+.+..... + +|+|+|.|+++++.++ |
T Consensus 501 a~lKd-------a~Il~~DEaTS~LD~~TE~~i~~~i~~~~~-~----------rTvI~IvH~l~ll~~~-D-------- 553 (591)
T KOG0057|consen 501 AFLKD-------APILLLDEATSALDSETEREILDMIMDVMS-G----------RTVIMIVHRLDLLKDF-D-------- 553 (591)
T ss_pred HHhcC-------CCeEEecCcccccchhhHHHHHHHHHHhcC-C----------CeEEEEEecchhHhcC-C--------
Confidence 99985 999999999999999999999999998433 3 5999999999999874 5
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
+|++|++|++.+.|+.+|++. ......++..
T Consensus 554 ----------------------kI~~l~nG~v~e~gth~ell~-~s~~~~~~w~ 584 (591)
T KOG0057|consen 554 ----------------------KIIVLDNGTVKEYGTHSELLA-PSELYADLWT 584 (591)
T ss_pred ----------------------EEEEEECCeeEEeccHHHHhh-hhhHHHHHhc
Confidence 559999999999998888876 4455555443
No 265
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-46 Score=346.04 Aligned_cols=194 Identities=30% Similarity=0.435 Sum_probs=170.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. . . .+.+++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~--~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-D--VAEACH 76 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-h--hHhhcE
Confidence 6899999999998889999999999999999999999999999999999999999999999987531 1 1 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|++|++.+++.+|+.||+.+..... ... .+.+.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~------- 144 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFL-GGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS------- 144 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhc-CCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc-------
Confidence 9999988888899999998754221 111 2347889999999888899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++.+++ .|+|++||+++++.. |++
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~--~~~ 195 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQG----------GIVIAATHIPLGLPG--ARE 195 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCchhhcc--CcE
Confidence 699999999999999999999999999987766 599999999999886 877
No 266
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.9e-46 Score=343.86 Aligned_cols=196 Identities=26% Similarity=0.357 Sum_probs=171.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .+.+++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--~~~-~~~~i~ 77 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD--LCT-YQKQLC 77 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC--HHH-HHhheE
Confidence 58999999999988999999999999999999999999999999999999999999999999876431 111 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|++|++.+++.+||++|+.+.... ... ...+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~----~~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~------- 144 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHF----SPG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS------- 144 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhc----Ccc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc-------
Confidence 999999998889999999886421 111 2357889999999888889999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.+.|+++++++ .|+|++||+.+.+.. ||.-
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~-~d~~ 196 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKG----------GAVLLTSHQDLPLNK-ADYE 196 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCchhccc-cchh
Confidence 699999999999999999999999999997665 599999999988865 7754
No 267
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.5e-46 Score=339.73 Aligned_cols=170 Identities=30% Similarity=0.491 Sum_probs=151.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+++|+++|++++| +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ...+.+
T Consensus 2 ~~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR-DAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHH-HHHhCC
Confidence 3579999999999 99999999999999999999999999999999999999999999999987653212 222346
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 169 IGLVFQSA---ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 169 Ig~V~Q~~---~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
++|+||++ .+++.+|++||+.+... ||||||||++|||||+.
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------LS~G~~qrl~la~al~~-- 121 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------LSGGNQQKVVLARWLAR-- 121 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh---------------------------------cCHHHHHHHHHHHHHcc--
Confidence 99999995 57888999999976320 99999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|+++.+++ .|+|++||+++++.++||++
T Consensus 122 -----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~d~v 174 (182)
T cd03215 122 -----DPRVLILDEPTRGVDVGAKAEIYRLIRELADAG----------KAVLLISSELDELLGLCDRI 174 (182)
T ss_pred -----CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999997665 59999999999999999988
No 268
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.7e-46 Score=342.95 Aligned_cols=200 Identities=26% Similarity=0.432 Sum_probs=169.0
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~-~~ 82 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP-LEDL-RS 82 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCC-HHHH-Hh
Confidence 34999999999975 47999999999999999999999999999999999999999999999999875422 2221 33
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|+|+||++.+|+ .|++||+.+.. ....+ .+.++++ .++++.+||||||||++|||||+.
T Consensus 83 ~i~~v~q~~~~~~-~tv~~~l~~~~----~~~~~----~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~---- 142 (207)
T cd03369 83 SLTIIPQDPTLFS-GTIRSNLDPFD----EYSDE----EIYGALR-------VSEGGLNLSQGQRQLLCLARALLK---- 142 (207)
T ss_pred hEEEEecCCcccC-ccHHHHhcccC----CCCHH----HHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhh----
Confidence 6999999999887 59999996521 12221 2333443 467899999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+.++..+.++|+++. ++ .|+|++||+++++.. ||++
T Consensus 143 ---~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tiii~th~~~~~~~-~d~v-------------- 193 (207)
T cd03369 143 ---RPRVLVLDEATASIDYATDALIQKTIREEF-TN----------STILTIAHRLRTIID-YDKI-------------- 193 (207)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCCHHHHhh-CCEE--------------
Confidence 699999999999999999999999999985 34 599999999999876 8877
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
++|++|++++.|+
T Consensus 194 ----------------~~l~~g~i~~~g~ 206 (207)
T cd03369 194 ----------------LVMDAGEVKEYDH 206 (207)
T ss_pred ----------------EEEECCEEEecCC
Confidence 9999999998874
No 269
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.6e-46 Score=357.17 Aligned_cols=228 Identities=22% Similarity=0.340 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.... ... .+.
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~-~~~-~~~ 95 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP-LHT-LRS 95 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC-HHH-Hhh
Confidence 46999999999976 57999999999999999999999999999999999999999999999999875432 112 233
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHH-----HHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArA 240 (382)
+|+|+||++.+|+ .|+++|+.... . .......+ .+.+.++.+ +++...++.+.+||||||||++||||
T Consensus 96 ~i~~v~q~~~l~~-~tv~~nl~~~~---~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 96 RLSIILQDPILFS-GSIRFNLDPEC---K-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred hEEEECCCCcccc-cHHHHhcCcCC---C-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 6999999999887 59999985421 1 11111111 123344444 55555666778999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++++++.+ + .|+|++||+++.+.. |||+
T Consensus 171 l~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~-~dri------- 224 (257)
T cd03288 171 FVR-------KSSILIMDEATASIDMATENILQKVVMTAFA-D----------RTVVTIAHRVSTILD-ADLV------- 224 (257)
T ss_pred Hhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-C----------CEEEEEecChHHHHh-CCEE-------
Confidence 997 6999999999999999999999999998754 4 599999999999975 8877
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++....+...+.++.
T Consensus 225 -----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 225 -----------------------LVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred -----------------------EEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 999999999999888876555555555544
No 270
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.1e-46 Score=386.80 Aligned_cols=220 Identities=25% Similarity=0.402 Sum_probs=188.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ......+.+
T Consensus 255 ~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~-~~~~~~~~~ 328 (501)
T PRK10762 255 EVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTR-SPQDGLANG 328 (501)
T ss_pred CcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHHHHCC
Confidence 46899999995 379999999999999999999999999999999999999999999999987543 221222336
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhHhh-cC---C-CCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 169 IGLVFQSA---ALFDSLTVRENVGFLLYE-NS---K-MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 169 Ig~V~Q~~---~l~~~lTV~eni~~~~~~-~~---~-~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
||||||++ .+++.+||.||+.++... .. + ....+..+++.++++.+++. +..++++.+|||||||||+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 99999996 578889999999875321 10 1 22334456688999999995 6789999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++.++| .|+|++|||++++.++|||+
T Consensus 409 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tviivtHd~~~~~~~~d~v------ 465 (501)
T PRK10762 409 GLMT-------RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG----------LSIILVSSEMPEVLGMSDRI------ 465 (501)
T ss_pred HHhh-------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHhhCCEE------
Confidence 9997 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+++..|+++++.
T Consensus 466 ------------------------~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 466 ------------------------LVMHEGRISGEFTREQAT 483 (501)
T ss_pred ------------------------EEEECCEEEEEeccccCC
Confidence 999999999999877764
No 271
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.6e-46 Score=341.20 Aligned_cols=183 Identities=37% Similarity=0.561 Sum_probs=163.0
Q ss_pred eEEEEeEEEEeCC------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEECCCCCChh
Q 016804 91 LIDCRNVYKSFGE------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 91 ~I~~~nvs~~yg~------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G~~i~~~~~~~ 162 (382)
.|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~----~ 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK----R 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch----H
Confidence 4899999999975 67999999999999999999999999999999999999 9999999999998642 1
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
. .+.+++|+||++.+|+.+|++||+.+.... . +||||||||++|||||+
T Consensus 79 ~-~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------~-----------------~LS~G~~qrv~laral~ 127 (194)
T cd03213 79 S-FRKIIGYVPQDDILHPTLTVRETLMFAAKL-------------R-----------------GLSGGERKRVSIALELV 127 (194)
T ss_pred h-hhheEEEccCcccCCCCCcHHHHHHHHHHh-------------c-----------------cCCHHHHHHHHHHHHHH
Confidence 1 233699999999999989999999763210 0 89999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HHHHhhchhcccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~~~~aDrv~~~~~~~~ 321 (382)
. +|++|||||||++||+.+++.+.++|+++.+++ .|+|++|||++ ++..+|||+
T Consensus 128 ~-------~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~~d~v-------- 182 (194)
T cd03213 128 S-------NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTG----------RTIICSIHQPSSEIFELFDKL-------- 182 (194)
T ss_pred c-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCchHHHHHhcCEE--------
Confidence 7 699999999999999999999999999997765 59999999996 788899988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 183 ----------------------~~l~~G~i~~~~ 194 (194)
T cd03213 183 ----------------------LLLSQGRVIYFG 194 (194)
T ss_pred ----------------------EEEeCCEEEecC
Confidence 999999998754
No 272
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.6e-46 Score=377.53 Aligned_cols=219 Identities=29% Similarity=0.423 Sum_probs=200.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+.+++++++|+|++..++++|||+|++||+.||+|.||||||||+++|.|+++||+|+|+++|+++.- .+..+..+..|
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~-~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRI-KSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEecc-CCHHHHHHcCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999754 34555556679
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
|+|+|++.|++.+||.|||.++.... ...+..+..++++++.+++||.-..++++++||-||||||.|-+||.+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr---- 157 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR---- 157 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc----
Confidence 99999999999999999999976321 234677888899999999999988899999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+-|-|...+++++.|++|+++| +|||+|||.++++.++|||+
T Consensus 158 ---~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G----------~tIi~ITHKL~Ev~~iaDrv-------------- 210 (501)
T COG3845 158 ---GARLLILDEPTAVLTPQEADELFEILRRLAAEG----------KTIIFITHKLKEVMAIADRV-------------- 210 (501)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeccHHHHHHhhCee--------------
Confidence 599999999999999999999999999999998 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
-||..||++...+
T Consensus 211 ----------------TVLR~Gkvvgt~~ 223 (501)
T COG3845 211 ----------------TVLRRGKVVGTVD 223 (501)
T ss_pred ----------------EEEeCCeEEeeec
Confidence 8899999877665
No 273
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.5e-46 Score=341.05 Aligned_cols=186 Identities=37% Similarity=0.597 Sum_probs=158.0
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC--C
Q 016804 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA--L 178 (382)
Q Consensus 101 yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~--l 178 (382)
|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+++|+||++. +
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 46678999999999999999999999999999999999999999999999999864211111112336999999983 5
Q ss_pred CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe
Q 016804 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD 258 (382)
|+ .|++||+.+..... +...++..+++.++++.+|+.+..++++.+||||||||++|||||+. +|++||||
T Consensus 82 ~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-------~p~llllD 152 (190)
T TIGR01166 82 FA-ADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAM-------RPDVLLLD 152 (190)
T ss_pred cc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEc
Confidence 64 79999998864322 23445556678899999999989999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHH
Q 016804 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (382)
Q Consensus 259 EPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~ 305 (382)
|||+|||+.++..+.++|+++++++ .|+|++|||+++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~----------~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEG----------MTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeecccc
Confidence 9999999999999999999998765 599999999875
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-46 Score=357.30 Aligned_cols=199 Identities=34% Similarity=0.589 Sum_probs=180.6
Q ss_pred ceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC
Q 016804 90 VLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~ 160 (382)
++++++||+|.|.. ..+++||||+|++||++||||+||||||||-|+|+||++|++|+|+++|+++..+
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~-- 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL-- 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc--
Confidence 57999999999953 3799999999999999999999999999999999999999999999999885432
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
. .++..+++.++|+.+|+. ++++|+|++|||||+||++|||
T Consensus 81 ---------~-----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IAR 122 (268)
T COG4608 81 ---------S-----------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIAR 122 (268)
T ss_pred ---------c-----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHH
Confidence 1 234566789999999996 5899999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|+++++|||+|+||...+.++.++|.+++++-+ .|+++||||++.+..+|||+
T Consensus 123 ALal-------~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~---------lt~lFIsHDL~vv~~isdri------ 180 (268)
T COG4608 123 ALAL-------NPKLIVADEPVSALDVSVQAQILNLLKDLQEELG---------LTYLFISHDLSVVRYISDRI------ 180 (268)
T ss_pred HHhh-------CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC---------CeEEEEEEEHHhhhhhcccE------
Confidence 9986 7999999999999999999999999999988732 69999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+||+.|+|++.|.+++++ ++.||+++.+++.
T Consensus 181 ------------------------~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a 212 (268)
T COG4608 181 ------------------------AVMYLGKIVEIGPTEEVFSNPLHPYTKALLSA 212 (268)
T ss_pred ------------------------EEEecCceeEecCHHHHhhCCCCHHHHHHHHh
Confidence 999999999999998865 6889999998875
No 275
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-46 Score=341.60 Aligned_cols=192 Identities=29% Similarity=0.429 Sum_probs=164.9
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEECCCCCChhh
Q 016804 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~---p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.+.++||+|.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~--~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA--EK 80 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch--hh
Confidence 578999999995 4579999999999999999999999999999999999999 89999999999875421 11
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
.+.+++|+||++.+|+.+||+||+.+.... . .++++.+||||||||++|||||+.
T Consensus 81 -~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------~-----------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 81 -YPGEIIYVSEEDVHFPTLTVRETLDFALRC-------------K-----------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred -hcceEEEEecccccCCCCcHHHHHhhhhhh-------------c-----------cccchhhCCHHHHHHHHHHHHHhh
Confidence 233699999999999989999999774310 0 567889999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE-EccCHHHHHHhhchhccccccccc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV-VTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIi-vTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+|++|||||||++||+.+++.+.++|+++.++++ .|+|+ ++|+.+++.++||++
T Consensus 136 -------~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~---------~t~ii~~~h~~~~~~~~~d~i--------- 190 (202)
T cd03233 136 -------RASVLCWDNSTRGLDSSTALEILKCIRTMADVLK---------TTTFVSLYQASDEIYDLFDKV--------- 190 (202)
T ss_pred -------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC---------CEEEEEEcCCHHHHHHhCCeE---------
Confidence 6999999999999999999999999999987521 35555 556678999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 191 ---------------------~~l~~G~i~~~g 202 (202)
T cd03233 191 ---------------------LVLYEGRQIYYG 202 (202)
T ss_pred ---------------------EEEECCEEEecC
Confidence 999999998754
No 276
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.3e-46 Score=341.72 Aligned_cols=188 Identities=32% Similarity=0.564 Sum_probs=164.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|+++|+++.... .....+.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP-PEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCC-HHHHhhCcE
Confidence 4789999999988899999999999999999999999999999999999 5899999999999876532 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+.+++++++ ++.+.+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~~~~~~l--------------------------------~~~~~~LS~G~~qrv~laral~~------ 121 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL--------------------------------RYVNEGFSGGEKKRNEILQLLLL------ 121 (200)
T ss_pred EEeecChhhccCccHHHHH--------------------------------hhccccCCHHHHHHHHHHHHHhc------
Confidence 9999999999888888776 12346899999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH-hhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~-~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+.++..+.++|+++++++ .|+|++||+++.+.+ +|||+
T Consensus 122 -~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~----------~tiii~sh~~~~~~~~~~d~i--------------- 175 (200)
T cd03217 122 -EPDLAILDEPDSGLDIDALRLVAEVINKLREEG----------KSVLIITHYQRLLDYIKPDRV--------------- 175 (200)
T ss_pred -CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhhCCEE---------------
Confidence 699999999999999999999999999997765 599999999999987 78877
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.| +.++
T Consensus 176 ---------------~~l~~G~i~~~~-~~~~ 191 (200)
T cd03217 176 ---------------HVLYDGRIVKSG-DKEL 191 (200)
T ss_pred ---------------EEEECCEEEEEc-cHHH
Confidence 999999999998 4443
No 277
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=6.2e-46 Score=340.84 Aligned_cols=195 Identities=35% Similarity=0.520 Sum_probs=169.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~-~-~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-D-E-PHRNILY 77 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-H-H-hhhheEE
Confidence 47899999999999999999999999999999999999999999999999999999999999875431 1 1 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
++|++.+++.+|+.+|+.+...... .+ .+.+.++++.+++.+..++++.+||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 145 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHG---GA--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS-------R 145 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcC---Cc--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc-------C
Confidence 9999999988999999987543221 11 3457789999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||++||+.++..+.++|+++++++ .|+|++||+...+. |+|+
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sH~~~~~~--~~~~ 195 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARG----------GIVLLTTHQDLGLV--EARE 195 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEEccccccc--ceEE
Confidence 99999999999999999999999999997766 49999999986543 4554
No 278
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-46 Score=338.94 Aligned_cols=183 Identities=30% Similarity=0.476 Sum_probs=161.3
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEECCCCCChhh
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
..|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ..
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~ 76 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KN 76 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HH
Confidence 35899999999974 67999999999999999999999999999999999986 489999999999863 11
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
.+.+++|++|++.+|+.+|++||+.+... ++ +||||||||++|||||+.
T Consensus 77 -~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------------~~-------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 77 -FQRSTGYVEQQDVHSPNLTVREALRFSAL-----------------LR-------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred -hhhceEEecccCccccCCcHHHHHHHHHH-----------------Hh-------------cCCHHHhHHHHHHHHHhc
Confidence 12369999999999998999999986421 00 899999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HHHHhhchhccccccccc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~~~~aDrv~~~~~~~~~ 322 (382)
+|++|||||||++||+.++..+++.|+++++++ .|+|++||+++ .+.++|||+
T Consensus 126 -------~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiiivtH~~~~~~~~~~d~i--------- 179 (192)
T cd03232 126 -------KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSG----------QAILCTIHQPSASIFEKFDRL--------- 179 (192)
T ss_pred -------CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcC----------CEEEEEEcCChHHHHhhCCEE---------
Confidence 699999999999999999999999999998765 59999999998 478888877
Q ss_pred hheehhccCCCCcccccccEEEEEeC-CeEEEEe
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYE-GKIVWQG 355 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~-G~i~~~g 355 (382)
++|++ |++++.|
T Consensus 180 ---------------------~~l~~~g~i~~~g 192 (192)
T cd03232 180 ---------------------LLLKRGGKTVYFG 192 (192)
T ss_pred ---------------------EEEcCCCeEEeCC
Confidence 99998 9998765
No 279
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=6e-46 Score=387.10 Aligned_cols=251 Identities=27% Similarity=0.405 Sum_probs=196.0
Q ss_pred hhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCC
Q 016804 9 SLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDG 88 (382)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
.+.+...+..++.++..+++.. .....++...+|+.+.+..|+...... ... ...
T Consensus 263 ~~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~ll~~~~~~~~~~-----------------~~~-~~~-- 317 (529)
T TIGR02857 263 GLFVLLLAPEFYLPLRQLGADY-----HARADGVAAAEALFAVLDAPRPLAGKA-----------------PVT-AAP-- 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCcccCCCc-----------------CCC-CCC--
Confidence 3344444445566666665555 667788888999998886442111000 000 011
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
...|+++||+|+|++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++....... . +
T Consensus 318 ~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~-l-r 395 (529)
T TIGR02857 318 APSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS-W-R 395 (529)
T ss_pred CCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH-H-H
Confidence 124999999999975 46999999999999999999999999999999999999999999999999987653332 2 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRV 235 (382)
.+|+||+|++.+|+ .|++||+.++.. ..+ ++++.++++.++++++.++.| .+||||||||+
T Consensus 396 ~~i~~v~Q~~~lf~-~ti~~Ni~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri 467 (529)
T TIGR02857 396 DQIAWVPQHPFLFA-GTIAENIRLARP---DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRL 467 (529)
T ss_pred hheEEEcCCCcccC-cCHHHHHhccCC---CCC----HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHH
Confidence 36999999999997 599999987531 122 244677888888876655543 67999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|||||++ +|++|||||||++||+.+++.+++.++++.+ + +|+|+|||+++.+. .||+|
T Consensus 468 ~laRal~~-------~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~----------~t~i~itH~~~~~~-~~d~i 526 (529)
T TIGR02857 468 ALARAFLR-------DAPLLLLDEPTAHLDAETEALVTEALRALAQ-G----------RTVLLVTHRLALAE-RADRI 526 (529)
T ss_pred HHHHHHhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHH-hCCEE
Confidence 99999997 5999999999999999999999999999853 3 59999999999985 58887
No 280
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-46 Score=385.46 Aligned_cols=221 Identities=23% Similarity=0.365 Sum_probs=188.1
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.+.++++|+++. .+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 255 ~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 329 (501)
T PRK11288 255 EVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR-SPRDAIRAG 329 (501)
T ss_pred CcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC-CHHHHHhCC
Confidence 457999999842 589999999999999999999999999999999999999999999999987432 122222346
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhHhhcC---C--CCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 169 IGLVFQSA---ALFDSLTVRENVGFLLYENS---K--MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 169 Ig~V~Q~~---~l~~~lTV~eni~~~~~~~~---~--~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
|+|+||++ .+|+.+|++||+.++..... + ......++.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 99999997 38888999999987532110 1 12223345678899999994 6789999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|+||||||||+|||+.++.+++++|++++++| .|||+||||++++.++|||+
T Consensus 410 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviivsHd~~~~~~~~d~i------ 466 (501)
T PRK11288 410 WLSE-------DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQG----------VAVLFVSSDLPEVLGVADRI------ 466 (501)
T ss_pred HHcc-------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHhhCCEE------
Confidence 9997 699999999999999999999999999998776 59999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 467 ------------------------~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 467 ------------------------VVMREGRIAGELAREQAT 484 (501)
T ss_pred ------------------------EEEECCEEEEEEccccCC
Confidence 999999999999887754
No 281
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.7e-46 Score=338.05 Aligned_cols=179 Identities=41% Similarity=0.680 Sum_probs=160.0
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEE
Q 016804 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (382)
Q Consensus 93 ~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V 172 (382)
+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +..++|+
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~-~~~~-~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS-PKEL-ARKIAYV 78 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC-HHHH-HHHHhHH
Confidence 4789999998888999999999999999999999999999999999999999999999999875432 2111 2258888
Q ss_pred ecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
|| +++.+|+.+..++.+.+||||||||++|||||+. +|
T Consensus 79 ~q-----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~-------~p 116 (180)
T cd03214 79 PQ-----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQ-------EP 116 (180)
T ss_pred HH-----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc-------CC
Confidence 88 5777888888889999999999999999999997 69
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 253 ~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
+++||||||++||+.++..+.++|++++++ + .|+|++||+++++.++|||+
T Consensus 117 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~----------~tiii~sh~~~~~~~~~d~~------------------ 168 (180)
T cd03214 117 PILLLDEPTSHLDIAHQIELLELLRRLARERG----------KTVVMVLHDLNLAARYADRV------------------ 168 (180)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE------------------
Confidence 999999999999999999999999999776 4 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEe
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 169 ------------~~l~~g~i~~~~ 180 (180)
T cd03214 169 ------------ILLKDGRIVAQG 180 (180)
T ss_pred ------------EEEECCEEEecC
Confidence 899999987653
No 282
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.3e-46 Score=424.34 Aligned_cols=265 Identities=22% Similarity=0.363 Sum_probs=204.3
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeC---CeeeeEeeeE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFG---EKHILRGVSF 112 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg---~~~iL~~vsl 112 (382)
....+++...+|+......|+.....+. ... ... ++.....-|+++||+|+|+ ++++|+|+||
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~------~~~-------~~~-~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl 1189 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNIDVRDN------GGI-------RIK-NKNDIKGKIEIMDVNFRYISRPNVPIYKDLTF 1189 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCC------ccc-------ccc-cCCCCCceEEEEEEEEECCCCCCCccccCeeE
Confidence 4556777788888888876542100000 000 000 0001112399999999996 3479999999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------------------------------------------------
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAP------------------------------------------------- 143 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p------------------------------------------------- 143 (382)
+|++|+++|||||||||||||+++|+|+++|
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999998
Q ss_pred -----CccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc
Q 016804 144 -----DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218 (382)
Q Consensus 144 -----~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~ 218 (382)
++|+|++||.++..+.... + +.+||||+|+|.||+ .||+|||.++.. ..+ ++.+.++++.+++++
T Consensus 1270 ~~~~~~~G~I~idG~di~~~~~~~-l-R~~i~~V~Qep~LF~-gTIreNI~~g~~---~at----~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVDICDYNLKD-L-RNLFSIVSQEPMLFN-MSIYENIKFGKE---DAT----REDVKRACKFAAIDE 1339 (1466)
T ss_pred cccCCCCCeEEECCEEHHhCCHHH-H-HhhccEeCCCCcccc-ccHHHHHhcCCC---CCC----HHHHHHHHHHcCCHH
Confidence 6999999999987754333 2 336999999999997 699999998631 122 345778888888877
Q ss_pred cccCCC-----------CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCC
Q 016804 219 VEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENG 286 (382)
Q Consensus 219 ~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~g~~~ 286 (382)
+....| ..||||||||++|||||++ +|+|||||||||+||+.+++.+++.|.++.. ++
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr-------~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~--- 1409 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLR-------EPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAD--- 1409 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHHhccCC---
Confidence 766654 5799999999999999997 5999999999999999999999999999863 34
Q ss_pred CCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeC----CeEE-EEecccccc
Q 016804 287 LANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYE----GKIV-WQGMTHEFT 361 (382)
Q Consensus 287 ~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~----G~i~-~~g~~~~~~ 361 (382)
+|+|+|||+++.+.. ||+| ++|++ |+++ ++|+.+|+.
T Consensus 1410 -------~TvIiIaHRlsti~~-aD~I------------------------------vvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1410 -------KTIITIAHRIASIKR-SDKI------------------------------VVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred -------CEEEEEechHHHHHh-CCEE------------------------------EEEeCCCCCCCEEEEecCHHHHH
Confidence 599999999999875 6766 99999 9955 899766666
Q ss_pred cCCCHHHHHHH
Q 016804 362 SSSNPIVQQFA 372 (382)
Q Consensus 362 ~~~~~~~~~~~ 372 (382)
...++...+++
T Consensus 1452 ~~~~g~Y~~l~ 1462 (1466)
T PTZ00265 1452 SVQDGVYKKYV 1462 (1466)
T ss_pred hcCCChHHHHH
Confidence 53344444444
No 283
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.5e-46 Score=334.05 Aligned_cols=163 Identities=36% Similarity=0.627 Sum_probs=146.3
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ... .+.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i 78 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD-PNE-LGDHV 78 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC-HHH-HHhhe
Confidence 478999999975 56999999999999999999999999999999999999999999999999875432 222 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+ .|++||+ ||||||||++|||||+.
T Consensus 79 ~~~~q~~~~~~-~tv~~~l--------------------------------------LS~G~~qrv~la~al~~------ 113 (173)
T cd03246 79 GYLPQDDELFS-GSIAENI--------------------------------------LSGGQRQRLGLARALYG------ 113 (173)
T ss_pred EEECCCCcccc-CcHHHHC--------------------------------------cCHHHHHHHHHHHHHhc------
Confidence 99999999888 4999997 99999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.+.|+++++++ .|+|++|||++++. +|||+
T Consensus 114 -~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~-~~d~v 165 (173)
T cd03246 114 -NPRILVLDEPNSHLDVEGERALNQAIAALKAAG----------ATRIVIAHRPETLA-SADRI 165 (173)
T ss_pred -CCCEEEEECCccccCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEE
Confidence 699999999999999999999999999997765 59999999999884 78877
No 284
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.8e-46 Score=407.06 Aligned_cols=255 Identities=32% Similarity=0.462 Sum_probs=206.7
Q ss_pred hhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCCe---eeeEeeeEE
Q 016804 37 FYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEK---HILRGVSFK 113 (382)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~~---~iL~~vsl~ 113 (382)
-+.+++.+-.++..+...++.-.+.+... ...+.-.++ |+++||+|+|+.+ ++|+|+||+
T Consensus 950 d~~ka~~Aa~~iF~i~dr~~~i~~~~~~~---------------~~~~~~~G~--I~~~~V~F~YPsRP~~~Il~~l~l~ 1012 (1228)
T KOG0055|consen 950 DISKAKIAAGSIFEILDRKPTIDPDSTSG---------------GKLPNVKGD--IEFRNVSFAYPTRPDVPVLNNLSLS 1012 (1228)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCC---------------CccccceeE--EEEeeeEeeCCCCCCchhhcCCcEE
Confidence 45677777888888888876333222000 000122334 9999999999754 599999999
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~ 193 (382)
|++|+.+||||||||||||++.+|-++|+|++|.|.+||+|+.++... ++ |.+||.|.|+|.||. -|++|||.|+.
T Consensus 1013 i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~-~L-R~~i~lVsQEP~LF~-~TIrENI~YG~- 1088 (1228)
T KOG0055|consen 1013 IRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLK-WL-RKQIGLVSQEPVLFN-GTIRENIAYGS- 1088 (1228)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHH-HH-HHhcceeccCchhhc-ccHHHHHhccC-
Confidence 999999999999999999999999999999999999999999876433 33 347999999999997 59999999972
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 194 ~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
...+ ++++.++++..+.+++....| .+||||||||+|||||+++ +|+||||||.||
T Consensus 1089 --~~vs----~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR-------nPkILLLDEATS 1155 (1228)
T KOG0055|consen 1089 --EEVS----EEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR-------NPKILLLDEATS 1155 (1228)
T ss_pred --CCCC----HHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc-------CCCeeeeeccch
Confidence 1133 344677888888777766665 6999999999999999998 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccE
Q 016804 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYR 342 (382)
Q Consensus 263 gLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (382)
+||.++++.+++.|++... | +|.|+|+|+++++++ ||.|
T Consensus 1156 ALDseSErvVQeALd~a~~-g----------RT~IvIAHRLSTIqn-aD~I----------------------------- 1194 (1228)
T KOG0055|consen 1156 ALDSESERVVQEALDRAME-G----------RTTIVIAHRLSTIQN-ADVI----------------------------- 1194 (1228)
T ss_pred hhhhhhHHHHHHHHHHhhc-C----------CcEEEEecchhhhhc-CCEE-----------------------------
Confidence 9999999999999999865 3 499999999999987 5655
Q ss_pred EEEEeCCeEEEEecccccccCCCHH
Q 016804 343 LIFLYEGKIVWQGMTHEFTSSSNPI 367 (382)
Q Consensus 343 ii~l~~G~i~~~g~~~~~~~~~~~~ 367 (382)
+|+++|+|+|+|+.+++..+...+
T Consensus 1195 -~Vi~~G~VvE~GtH~~L~~~~G~Y 1218 (1228)
T KOG0055|consen 1195 -AVLKNGKVVEQGTHDELLAKRGIY 1218 (1228)
T ss_pred -EEEECCEEEecccHHHHHhCCCch
Confidence 999999999999666676644333
No 285
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-45 Score=365.94 Aligned_cols=240 Identities=28% Similarity=0.460 Sum_probs=215.3
Q ss_pred cceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCC
Q 016804 89 DVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLI 159 (382)
Q Consensus 89 ~~~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~ 159 (382)
.++|+++|+++.|. ...++++|||+|.+||.+||||.||||||-..+.|+||++- -+|+|.|+|+++-...
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46799999999996 57899999999999999999999999999999999999975 3799999999987653
Q ss_pred Chhh--hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc---ccccCCCCCCChHHH
Q 016804 160 SDEE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPSELSGGMK 232 (382)
Q Consensus 160 ~~~~--~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~---~~~~~~~~~LSGGqr 232 (382)
.... .+..+|+++||+| .|.|-.|+...+...+..+++++.++.++++.++|+.+|+. ..++.||++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 3221 2233699999998 58888899999999888888899999999999999999995 467899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
|||.||+||++ +|++||.||||++||...+.+++++|++|.++-+ +++++||||+..+.++|||
T Consensus 164 QRVMIAMALan-------~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~g---------Ma~lfITHDL~iVr~~ADr 227 (534)
T COG4172 164 QRVMIAMALAN-------EPDLLIADEPTTALDVTVQAQILDLLKELQAELG---------MAILFITHDLGIVRKFADR 227 (534)
T ss_pred hHHHHHHHHcC-------CCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhC---------cEEEEEeccHHHHHHhhhh
Confidence 99999999996 6999999999999999999999999999988732 7999999999999999999
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
| .||.+|+++++|.+++++ .+.|||++.++..
T Consensus 228 V------------------------------~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 228 V------------------------------YVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred E------------------------------EEEeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 9 888899999999998865 6899999998874
No 286
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-45 Score=350.83 Aligned_cols=220 Identities=23% Similarity=0.368 Sum_probs=189.1
Q ss_pred eEEEEeEEEEeCC--------------------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 016804 91 LIDCRNVYKSFGE--------------------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (382)
Q Consensus 91 ~I~~~nvs~~yg~--------------------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i 150 (382)
.|+++||+|.|.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3788888888732 34899999999999999999999999999999999999999999999
Q ss_pred CCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChH
Q 016804 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGG 230 (382)
Q Consensus 151 ~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGG 230 (382)
+|. +++++|++.+++.+|+.+|+.+.... .+...++..+.+.++++.+++.+..++++.+||||
T Consensus 84 ~g~---------------~~~~~~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 147 (264)
T PRK13546 84 NGE---------------VSVIAISAGLSGQLTGIENIEFKMLC-MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSG 147 (264)
T ss_pred CCE---------------EeEEecccCCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHH
Confidence 984 35678887777889999999875432 23444555666778899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 231 qrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
|||||+|||||+. +|++|||||||+|||+.++..+.+.|.++++++ .|+|++||+++++..+|
T Consensus 148 q~qrv~Laral~~-------~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g----------~tiIiisH~~~~i~~~~ 210 (264)
T PRK13546 148 MRAKLGFSINITV-------NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQN----------KTIFFVSHNLGQVRQFC 210 (264)
T ss_pred HHHHHHHHHHHhh-------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHHc
Confidence 9999999999997 599999999999999999999999999997665 59999999999999999
Q ss_pred chhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 311 DRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 311 Drv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
|++ ++|++|++++.|+.+++..........|..
T Consensus 211 d~i------------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 211 TKI------------------------------AWIEGGKLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred CEE------------------------------EEEECCEEEEeCCHHHHHHHhHHHHHHHHh
Confidence 988 999999999999888776554455555554
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=9.2e-46 Score=334.65 Aligned_cols=176 Identities=36% Similarity=0.654 Sum_probs=156.6
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .+.++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~-~~~~i 77 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKA-LSSLI 77 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH--HHH-HHhhE
Confidence 4789999999764 799999999999999999999999999999999999999999999999976432 111 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+ .|++||+ +.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~-~tv~~~i-----------------------------------~~~LS~G~~qrv~laral~~------ 115 (178)
T cd03247 78 SVLNQRPYLFD-TTLRNNL-----------------------------------GRRFSGGERQRLALARILLQ------ 115 (178)
T ss_pred EEEccCCeeec-ccHHHhh-----------------------------------cccCCHHHHHHHHHHHHHhc------
Confidence 99999999886 6999987 78999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+.+++.+.+.|+++. ++ .|+|++||+++++. .|||+
T Consensus 116 -~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tii~~sh~~~~~~-~~d~~---------------- 166 (178)
T cd03247 116 -DAPIVLLDEPTVGLDPITERQLLSLIFEVL-KD----------KTLIWITHHLTGIE-HMDKI---------------- 166 (178)
T ss_pred -CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CC----------CEEEEEecCHHHHH-hCCEE----------------
Confidence 699999999999999999999999999985 34 59999999999986 58877
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEe
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 167 --------------~~l~~g~i~~~~ 178 (178)
T cd03247 167 --------------LFLENGKIIMQG 178 (178)
T ss_pred --------------EEEECCEEEecC
Confidence 999999998754
No 288
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.7e-45 Score=383.31 Aligned_cols=221 Identities=20% Similarity=0.366 Sum_probs=187.6
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+.++|+++|+++ .+|+++||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++.... .....+.
T Consensus 265 ~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~-~~~~~~~ 338 (510)
T PRK15439 265 GAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALS-TAQRLAR 338 (510)
T ss_pred CCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCC-HHHHHhC
Confidence 456899999994 2699999999999999999999999999999999999999999999999875432 2222234
Q ss_pred eEEEEecCC---CCCCCCCHHHHHHhhHhh-cC-CCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHH
Q 016804 168 RIGLVFQSA---ALFDSLTVRENVGFLLYE-NS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 168 ~Ig~V~Q~~---~l~~~lTV~eni~~~~~~-~~-~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+|+|+||++ .+|+.+|+.+|+...... .. .......++.+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 699999985 488889999999643111 00 011223345678999999997 788999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|+||||||||+|||+.++..+.++|++++++| .|||+||||++++.++|||+
T Consensus 419 ~~-------~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~tiIivsHd~~~i~~~~d~i-------- 473 (510)
T PRK15439 419 EA-------SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN----------VAVLFISSDLEEIEQMADRV-------- 473 (510)
T ss_pred hh-------CCCEEEECCCCcCcChhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE--------
Confidence 97 699999999999999999999999999998776 59999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 474 ----------------------~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 474 ----------------------LVMHQGEISGALTGAAIN 491 (510)
T ss_pred ----------------------EEEECCEEEEEEccccCC
Confidence 999999999999887765
No 289
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.1e-45 Score=423.51 Aligned_cols=221 Identities=24% Similarity=0.391 Sum_probs=197.7
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
+.+|+++||+|+|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ... .+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~--~~~-~r 2011 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--ISD-VH 2011 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch--HHH-Hh
Confidence 457999999999985 5799999999999999999999999999999999999999999999999987431 111 23
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.+|||+||++.+++.+|++||+.+.... .+.+.++.++.++++++.+||.+..++++++|||||||||+||+||+.
T Consensus 2012 ~~IGy~pQ~~~L~~~LTv~E~L~l~a~l-~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~--- 2087 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDDLLTGREHLYLYARL-RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG--- 2087 (2272)
T ss_pred hhEEEEeccccCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc---
Confidence 3699999999999999999999886533 334555566778899999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|+||||||||+||||.+++.++++|++++++| +|||++||+++++..+|||+
T Consensus 2088 ----~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g----------~TIILtTH~mee~e~lcDrV------------- 2140 (2272)
T TIGR01257 2088 ----CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREG----------RAVVLTSHSMEECEALCTRL------------- 2140 (2272)
T ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 699999999999999999999999999998776 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++..|++.++
T Consensus 2141 -----------------~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2141 -----------------AIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred -----------------EEEECCEEEEECCHHHH
Confidence 99999999999988765
No 290
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.6e-45 Score=421.08 Aligned_cols=219 Identities=26% Similarity=0.423 Sum_probs=187.2
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.|+++||+++|.+ .++|+|+||+|++||.+||||+||||||||+++|.|+++|++|+|+|||.|+..... .+. |.+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l-~~L-R~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL-MDL-RKV 1314 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCH-HHH-Hhc
Confidence 4999999999964 369999999999999999999999999999999999999999999999999887533 333 337
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaI 237 (382)
|++|||+|.||+. |++|||.++. ..+ ++++.++++++++.++.++.| ..||||||||++|
T Consensus 1315 IsiVpQdp~LF~G-TIreNLd~~~----~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaL 1385 (1622)
T PLN03130 1315 LGIIPQAPVLFSG-TVRFNLDPFN----EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSL 1385 (1622)
T ss_pred cEEECCCCccccc-cHHHHhCcCC----CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHH
Confidence 9999999999985 9999997531 122 345778889888877666655 5899999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||++ +|+|||||||||+||..+.+.+++.|++..+. +|+|+|+|+++++.. ||||
T Consensus 1386 ARALLr-------~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~-----------~TvI~IAHRL~tI~~-~DrI---- 1442 (1622)
T PLN03130 1386 ARALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKS-----------CTMLIIAHRLNTIID-CDRI---- 1442 (1622)
T ss_pred HHHHHc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-----------CEEEEEeCChHHHHh-CCEE----
Confidence 999998 59999999999999999999999999988543 599999999999987 6766
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHH
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQ 369 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~ 369 (382)
+||++|+|++.|+++++....+....
T Consensus 1443 --------------------------lVLd~G~IvE~Gt~~eLl~~~~g~f~ 1468 (1622)
T PLN03130 1443 --------------------------LVLDAGRVVEFDTPENLLSNEGSAFS 1468 (1622)
T ss_pred --------------------------EEEECCEEEEeCCHHHHHhCCCCHHH
Confidence 99999999999998888754333333
No 291
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-46 Score=356.66 Aligned_cols=213 Identities=31% Similarity=0.499 Sum_probs=183.0
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--hhccceEEEEe
Q 016804 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLRIGLVF 173 (382)
Q Consensus 96 nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~~~~~~Ig~V~ 173 (382)
|+.+++|+. -=+++|+.+.-.++||.|+||||||||+|+|+||.+|++|.|.+||+-+.+..... ...+++|||||
T Consensus 5 ~~~~~lG~~--~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 5 NFRQRLGNF--ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred ehhhhcCce--EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEe
Confidence 344555543 23789999887899999999999999999999999999999999998765432211 12345799999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
|+..|||++||+.|+.|+... .. .....++.+.+|++++++|+|.+|||||||||||+|||+. .|+
T Consensus 83 QDARLFpH~tVrgNL~YG~~~---~~----~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt-------~P~ 148 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWK---SM----RAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT-------APE 148 (352)
T ss_pred eccccccceEEecchhhhhcc---cc----hHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc-------CCC
Confidence 999999999999999998642 11 2335678899999999999999999999999999999997 599
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCC
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAP 333 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~ 333 (382)
+||||||.|+||..-+.+++-.|++|+++-+ +-|++|||.++++.++||||
T Consensus 149 LLLmDEPLaSLD~~RK~EilpylERL~~e~~---------IPIlYVSHS~~Ev~RLAd~v-------------------- 199 (352)
T COG4148 149 LLLMDEPLASLDLPRKREILPYLERLRDEIN---------IPILYVSHSLDEVLRLADRV-------------------- 199 (352)
T ss_pred eeeecCchhhcccchhhHHHHHHHHHHHhcC---------CCEEEEecCHHHHHhhhheE--------------------
Confidence 9999999999999999999999999998743 68999999999999999988
Q ss_pred CcccccccEEEEEeCCeEEEEecccccccC
Q 016804 334 DKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 334 ~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++||+.+.|..++++..
T Consensus 200 ----------V~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 200 ----------VVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred ----------EEecCCeEEecCcHHHHhcC
Confidence 99999999999988887643
No 292
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.7e-45 Score=421.31 Aligned_cols=222 Identities=24% Similarity=0.392 Sum_probs=196.7
Q ss_pred CCcceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
...+.|+++||+|+|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....
T Consensus 924 ~~~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~--~~~~- 1000 (2272)
T TIGR01257 924 GLVPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET--NLDA- 1000 (2272)
T ss_pred CCCceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc--hHHH-
Confidence 3446899999999995 5789999999999999999999999999999999999999999999999998753 1111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+..+||+||++.+|+.+||+||+.+.... .+...++.++++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l-kg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~- 1078 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQL-KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG- 1078 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc-
Confidence 234699999999999999999999987543 334445566778999999999999999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+||||||||+|||+.+++.++++|++++ +| +|||++||+++++..+|||+
T Consensus 1079 ------~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g----------~TIIltTHdmdea~~laDrI----------- 1130 (2272)
T TIGR01257 1079 ------DAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SG----------RTIIMSTHHMDEADLLGDRI----------- 1130 (2272)
T ss_pred ------CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CC----------CEEEEEECCHHHHHHhCCEE-----------
Confidence 699999999999999999999999999995 45 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++..|++.++
T Consensus 1131 -------------------~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1131 -------------------AIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred -------------------EEEECCEEEEecCHHHH
Confidence 99999999999977654
No 293
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-45 Score=379.14 Aligned_cols=222 Identities=22% Similarity=0.357 Sum_probs=185.7
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+++|+++||+++| +++|+++||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++... +.....+..
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~~~~~ 324 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH-NANEAINHG 324 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCC-CHHHHHHCC
Confidence 4689999999985 4699999999999999999999999999999999999999999999999987543 222222335
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhH-h---hcCC-CCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 169 IGLVFQSA---ALFDSLTVRENVGFLL-Y---ENSK-MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 169 Ig~V~Q~~---~l~~~lTV~eni~~~~-~---~~~~-~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
++|+||++ .+|+.+|+.+|..+.. . ...+ ......++.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence 99999985 4788888887743221 0 0011 12334456678899999995 5679999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|+||||||||+|||+.++..++++|+++.+++ .|||++|||++++.++|||+
T Consensus 405 al~~-------~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~----------~tvi~vsHd~~~~~~~~d~v------ 461 (491)
T PRK10982 405 WLLT-------QPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD----------KGIIIISSEMPELLGITDRI------ 461 (491)
T ss_pred HHhc-------CCCEEEEcCCCcccChhHHHHHHHHHHHHHHCC----------CEEEEECCChHHHHhhCCEE------
Confidence 9997 699999999999999999999999999998776 59999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++..++++++
T Consensus 462 ------------------------~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 462 ------------------------LVMSNGLVAGIVDTKTT 478 (491)
T ss_pred ------------------------EEEECCEEEEEEccccC
Confidence 99999999988866544
No 294
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.8e-45 Score=420.25 Aligned_cols=215 Identities=27% Similarity=0.426 Sum_probs=184.8
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.|+++||+++|++ +++|+|+||+|++||.+|||||||||||||+++|.|+++|++|+|.+||.|+....... . +.+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~-l-R~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTD-L-RRV 1311 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHH-H-Hhh
Confidence 4999999999953 47999999999999999999999999999999999999999999999999987653333 2 336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaI 237 (382)
|+||||+|.+|+. |++|||.++. ..+ ++++.++++.+++.++.++.| ..||||||||++|
T Consensus 1312 i~iVpQdp~LF~g-TIr~NL~~~~----~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232 1312 LSIIPQSPVLFSG-TVRFNIDPFS----EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred cEEECCCCeeeCc-cHHHHcCCCC----CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence 9999999999985 9999997531 122 344677888888877665554 5899999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||++ +|+|||||||||+||+++.+.+++.|++..++ +|+|+|||+++++.+ ||||
T Consensus 1383 ARALLr-------~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~-----------~TvI~IAHRl~ti~~-~DrI---- 1439 (1495)
T PLN03232 1383 ARALLR-------RSKILVLDEATASVDVRTDSLIQRTIREEFKS-----------CTMLVIAHRLNTIID-CDKI---- 1439 (1495)
T ss_pred HHHHHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEeCCHHHHHh-CCEE----
Confidence 999997 59999999999999999999999999987543 599999999999987 6666
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSN 365 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~ 365 (382)
+||++|+|++.|+++|+....+
T Consensus 1440 --------------------------lVL~~G~ivE~Gt~~eLl~~~~ 1461 (1495)
T PLN03232 1440 --------------------------LVLSSGQVLEYDSPQELLSRDT 1461 (1495)
T ss_pred --------------------------EEEECCEEEEECCHHHHHhCCC
Confidence 9999999999998888775443
No 295
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.5e-45 Score=337.91 Aligned_cols=180 Identities=26% Similarity=0.414 Sum_probs=152.0
Q ss_pred EEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 92 IDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 92 I~~~nvs~~yg~~-----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
|+++||+++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 4789999999764 699999999999999999999999999999999999999999999998
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcC-----------CcccccCCCCCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-----------LKGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~g-----------L~~~~~~~~~~LSGGqrQRV 235 (382)
+|+|+||++.+|+ .|++||+.+... ...+. ..++++.++ +....++.+.+||+|||||+
T Consensus 67 -~i~~~~q~~~l~~-~t~~enl~~~~~----~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv 136 (204)
T cd03250 67 -SIAYVSQEPWIQN-GTIRENILFGKP----FDEER----YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRI 136 (204)
T ss_pred -EEEEEecCchhcc-CcHHHHhccCCC----cCHHH----HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHH
Confidence 4899999999985 699999987532 12211 223333333 33445667899999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~-lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|||||+. +|+++||||||++||+.+++.+.+ +++++.+++ .|+|++||+++.+.. ||++
T Consensus 137 ~laral~~-------~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~----------~tvi~~sh~~~~~~~-~d~i 197 (204)
T cd03250 137 SLARAVYS-------DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN----------KTRILVTHQLQLLPH-ADQI 197 (204)
T ss_pred HHHHHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC----------CEEEEEeCCHHHHhh-CCEE
Confidence 99999997 699999999999999999999988 567665555 599999999999987 8877
No 296
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.7e-45 Score=378.37 Aligned_cols=221 Identities=26% Similarity=0.393 Sum_probs=181.2
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEECCCCCChhhhcc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
..++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++........ .+
T Consensus 257 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~-~~ 335 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWD-IK 335 (490)
T ss_pred CCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHH-HH
Confidence 35689999999999988899999999999999999999999999999999999876 79999999986532111111 22
Q ss_pred ceEEEEecCCCCCC--CCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHH
Q 016804 167 LRIGLVFQSAALFD--SLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~--~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+|||++|++.++. ..++.+++.++.... ......+.+++++++++.++|.+ ..++++.+|||||||||+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 36999999986643 246777765432110 01112233566889999999987 8899999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH-hhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~-~aDrv~~~~~~ 319 (382)
|+. +|++|||||||+|||+.++..+.++|+++++++. .|||++|||++++.+ +|||+
T Consensus 416 l~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~---------~tviivsHd~~~~~~~~~d~v------ 473 (490)
T PRK10938 416 LVK-------HPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGE---------TQLLFVSHHAEDAPACITHRL------ 473 (490)
T ss_pred Hhc-------CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC---------cEEEEEecchhhhhhhhheeE------
Confidence 997 6999999999999999999999999999987652 479999999999987 58877
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|+|++.-
T Consensus 474 ------------------------~~l~~G~i~~~~ 485 (490)
T PRK10938 474 ------------------------EFVPDGDIYRYV 485 (490)
T ss_pred ------------------------EEecCCceEEee
Confidence 999999998765
No 297
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-45 Score=381.46 Aligned_cols=208 Identities=29% Similarity=0.456 Sum_probs=179.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|. .+||
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i~ 67 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-------------ERLG 67 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CEEE
Confidence 589999999999889999999999999999999999999999999999999999999999872 1599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhc----------CCC---------------------CHHHHHHHHHHHHHHcCCccc
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYEN----------SKM---------------------RDEQISELVKENLAAVGLKGV 219 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~----------~~~---------------------~~~~~~~~v~~~L~~~gL~~~ 219 (382)
|++|++.+++.+||+||+.++.... ... ...+.++++.++++.+|+.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 9999999999999999998753100 000 001224567889999999764
Q ss_pred -ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 016804 220 -EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (382)
Q Consensus 220 -~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIi 298 (382)
.++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|++ .+ .|||+
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~----------~tiii 207 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFS-------NPDILLLDEPTNNLDINTIRWLEDVLNE---RN----------STMII 207 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCcccCHHHHHHHHHHHHh---CC----------CeEEE
Confidence 357899999999999999999997 6999999999999999999999999863 34 49999
Q ss_pred EccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeE-EEEecccccc
Q 016804 299 VTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKI-VWQGMTHEFT 361 (382)
Q Consensus 299 vTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i-~~~g~~~~~~ 361 (382)
||||++.+.++|||+ ++|++|++ ++.|+++++.
T Consensus 208 vsHd~~~~~~~~d~i------------------------------~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 208 ISHDRHFLNSVCTHM------------------------------ADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EeCCHHHHHhhcceE------------------------------EEEeCCEEEEecCCHHHHH
Confidence 999999999999988 99999999 4788777664
No 298
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=5.9e-45 Score=360.00 Aligned_cols=200 Identities=37% Similarity=0.606 Sum_probs=174.6
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHH
Q 016804 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE 201 (382)
Q Consensus 122 LiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~ 201 (382)
|+||||||||||+|+|+|+++|++|+|+++|+++.... . .+.+|+|+||++.+|+++||+||+.|++... +....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~---~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-P---HLRHINMVFQSYALFPHMTVEENVAFGLKMR-KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-H---HHCCEEEEecCccccCCCcHHHHHHHHHhhc-CCCHH
Confidence 68999999999999999999999999999999875432 1 1236999999999999999999999875322 33445
Q ss_pred HHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 016804 202 QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK 281 (382)
Q Consensus 202 ~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~ 281 (382)
+..+++.++++.++|.++.++++.+|||||||||+|||||+. +|++|||||||+|||+.++..+.+.|+++.+
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~-------~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF-------KPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 556778899999999999999999999999999999999997 6999999999999999999999999999987
Q ss_pred c-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 282 K-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 282 ~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
+ + .|+|+||||++++.++|||+ ++|++|++++.|+++++
T Consensus 149 ~~g----------~tiiivTHd~~e~~~~~d~i------------------------------~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 149 QLG----------ITFVFVTHDQEEAMTMSDRI------------------------------AIMRKGKIAQIGTPEEI 188 (325)
T ss_pred hcC----------CEEEEEeCCHHHHHHhCCEE------------------------------EEEECCEEEEEcCHHHH
Confidence 5 4 59999999999999999988 99999999999998887
Q ss_pred cc-CCCHHHHHHHc
Q 016804 361 TS-SSNPIVQQFAS 373 (382)
Q Consensus 361 ~~-~~~~~~~~~~~ 373 (382)
.. +.+..+..|..
T Consensus 189 ~~~~~~~~~~~~~~ 202 (325)
T TIGR01187 189 YEEPANLFVARFIG 202 (325)
T ss_pred HhCCCcHHHHHhcC
Confidence 54 45567776665
No 299
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.6e-44 Score=379.55 Aligned_cols=274 Identities=22% Similarity=0.297 Sum_probs=208.0
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+....+.|...+..++.++..+++.. .....+..+.+|+...+..+..+........ .. ..... +
T Consensus 266 t~g~l~a~~~~~~~l~~pi~~l~~~~-----~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~---~~-----~~~~~--~ 330 (555)
T TIGR01194 266 DAAAISAFVLALLYIKGPLEMLVSAL-----PILAQAQIACQRLADFGERFNEPEPELELSD---AD-----NVLLL--A 330 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhccccccccccc---cc-----ccccc--c
Confidence 33445556666667788888888777 7788889999999998754321100000000 00 00000 0
Q ss_pred CCCCcceEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC
Q 016804 85 EDDGDVLIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~~-----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~ 159 (382)
+......|+++||+|+|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++....
T Consensus 331 ~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 331 HDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS 410 (555)
T ss_pred cCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC
Confidence 00112349999999999752 5999999999999999999999999999999999999999999999999987643
Q ss_pred ChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC------CCCChHHHH
Q 016804 160 SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP------SELSGGMKK 233 (382)
Q Consensus 160 ~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~------~~LSGGqrQ 233 (382)
.. +. +.+++||+|++.+|+. |+++|.. +...++++.++++.++++++.++.| ..|||||||
T Consensus 411 ~~-~~-~~~i~~v~q~~~lf~~-ti~~n~~----------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RD-DY-RDLFSAIFADFHLFDD-LIGPDEG----------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HH-HH-HhhCcEEccChhhhhh-hhhcccc----------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 22 22 2369999999999974 8988841 1123455778999999988776655 469999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR-SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~-~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
|++|||||++ +|++|||||||++||+.+++.+.+.+. .+..++ +|+|+|||+++.+. .||+
T Consensus 478 RlalaRall~-------~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~----------~tiiiisH~~~~~~-~~d~ 539 (555)
T TIGR01194 478 RLALICAWLE-------DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQG----------KTIIIISHDDQYFE-LADQ 539 (555)
T ss_pred HHHHHHHHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeccHHHHH-hCCE
Confidence 9999999997 599999999999999999999988654 455555 59999999998765 6776
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEE
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQ 354 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~ 354 (382)
| ++|++|++++.
T Consensus 540 i------------------------------~~l~~G~i~~~ 551 (555)
T TIGR01194 540 I------------------------------IKLAAGCIVKD 551 (555)
T ss_pred E------------------------------EEEECCEEEEe
Confidence 6 99999999865
No 300
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.9e-45 Score=417.71 Aligned_cols=275 Identities=24% Similarity=0.309 Sum_probs=209.5
Q ss_pred HHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEe
Q 016804 17 KSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRN 96 (382)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~n 96 (382)
..++.++..+.... ........+.+|+.+.+..|+....... .. .....-+..+ .|+++|
T Consensus 1230 ~~~~~~l~~l~~~~-----~~~e~~~~s~eRi~~~~~~~~e~~~~~~------~~-------~~~~~wp~~g--~I~f~n 1289 (1522)
T TIGR00957 1230 LQVTFYLNWLVRMS-----SEMETNIVAVERLKEYSETEKEAPWQIQ------ET-------APPSGWPPRG--RVEFRN 1289 (1522)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCCcccccc------CC-------CCCCCCCCCC--cEEEEE
Confidence 33344444444443 4556667788899988877642210000 00 0000001122 399999
Q ss_pred EEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEec
Q 016804 97 VYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174 (382)
Q Consensus 97 vs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q 174 (382)
|+++|++ .++|+||||+|++||.+||||+||||||||+++|.|+++|++|+|++||.|+...... +. |.+|++|||
T Consensus 1290 Vsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~-~L-R~~i~iVpQ 1367 (1522)
T TIGR00957 1290 YCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLH-DL-RFKITIIPQ 1367 (1522)
T ss_pred EEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHH-HH-HhcCeEECC
Confidence 9999964 4699999999999999999999999999999999999999999999999999875433 32 336999999
Q ss_pred CCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhc
Q 016804 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIF 243 (382)
Q Consensus 175 ~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~ 243 (382)
+|.||++ |+++||... ...++ +++.++++.+++.++..+.| ..||||||||++|||||++
T Consensus 1368 dp~LF~g-TIr~NLdp~----~~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1368 DPVLFSG-SLRMNLDPF----SQYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred CCcccCc-cHHHHcCcc----cCCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 9999985 999999631 11233 34677888888876554443 5799999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|+|||||||||+||+++...+++.|++..++ +|+|+|+|+++++.. ||||
T Consensus 1439 -------~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~-----------~TvI~IAHRl~ti~~-~DrI---------- 1489 (1522)
T TIGR00957 1439 -------KTKILVLDEATAAVDLETDNLIQSTIRTQFED-----------CTVLTIAHRLNTIMD-YTRV---------- 1489 (1522)
T ss_pred -------CCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEecCHHHHHh-CCEE----------
Confidence 59999999999999999999999999987543 599999999999987 5655
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
+||++|+|++.|+++++... +....+++
T Consensus 1490 --------------------lVld~G~IvE~G~~~eLl~~-~~~f~~l~ 1517 (1522)
T TIGR00957 1490 --------------------IVLDKGEVAEFGAPSNLLQQ-RGIFYSMA 1517 (1522)
T ss_pred --------------------EEEECCEEEEECCHHHHHhC-CCHHHHHH
Confidence 99999999999988887754 34444443
No 301
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.6e-45 Score=383.75 Aligned_cols=208 Identities=29% Similarity=0.427 Sum_probs=179.9
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+||+++||+++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. .+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-------------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-------------IK 71 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CE
Confidence 5899999999998 788999999999999999999999999999999999999999999999741 15
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhc-------------CCCCH----------------------HHHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYEN-------------SKMRD----------------------EQISELVKENLAA 213 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~-------------~~~~~----------------------~~~~~~v~~~L~~ 213 (382)
||||||++.+++.+||.||+.++.... ..... .+..+++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 999999999999999999998753210 00000 0124567889999
Q ss_pred cCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 016804 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (382)
Q Consensus 214 ~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~ 293 (382)
+|+.. .++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.+.|+++. +
T Consensus 152 ~gl~~-~~~~~~~LSgGqkqrv~la~al~~-------~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~---------- 211 (556)
T PRK11819 152 LRCPP-WDAKVTKLSGGERRRVALCRLLLE-------KPDMLLLDEPTNHLDAESVAWLEQFLHDYP--G---------- 211 (556)
T ss_pred CCCCc-ccCchhhcCHHHHHHHHHHHHHhC-------CCCEEEEcCCCCcCChHHHHHHHHHHHhCC--C----------
Confidence 99964 789999999999999999999997 699999999999999999999999998872 2
Q ss_pred eEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 294 ASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 294 ~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
|||+||||++++..+||+| ++|++|+++ +.|+.+++.
T Consensus 212 -tviiisHd~~~~~~~~d~i------------------------------~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 212 -TVVAVTHDRYFLDNVAGWI------------------------------LELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred -eEEEEeCCHHHHHhhcCeE------------------------------EEEeCCEEEEecCCHHHHH
Confidence 8999999999999999988 999999986 778766543
No 302
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-44 Score=373.11 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=184.2
Q ss_pred cceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 89 DVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.++++++||+++|++ +.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------- 88 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence 457999999999976 4699999999999999999999999999999999999999999999999641
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
++.+.+.+++.+|++||+.+.... .+.+.++..+++.++++.+++.++.++++.+||||||||++|||||+.
T Consensus 89 -----~i~~~~~l~~~lTV~EnL~l~~~~-~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~-- 160 (549)
T PRK13545 89 -----LIAISSGLNGQLTGIENIELKGLM-MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHI-- 160 (549)
T ss_pred -----eEEeccccCCCCcHHHHHHhhhhh-cCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHh--
Confidence 122234566778999999875422 224455556677889999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||+|||+.++..+.+.|++++++| .|+|++|||++++.++|||+
T Consensus 161 -----~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G----------~TIIIVSHdl~~i~~l~DrI------------ 213 (549)
T PRK13545 161 -----NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQG----------KTIFFISHSLSQVKSFCTKA------------ 213 (549)
T ss_pred -----CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhCCEE------------
Confidence 699999999999999999999999999997665 59999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 214 ------------------ivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 214 ------------------LWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred ------------------EEEECCEEEEECCHHHHHh
Confidence 9999999999998877654
No 303
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.5e-44 Score=383.48 Aligned_cols=223 Identities=30% Similarity=0.493 Sum_probs=194.8
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-- 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~-- 163 (382)
++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++........
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 47999999999953 479999999999999999999999999999999999999999999999998765432221
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
..+..++|+||++.+|+++|+.||+.+.... .+....+.++++.++++.+|+.+..++.+.+|||||+||++|||||+.
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVY-AGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 1234699999999999999999999876532 223444556678899999999999999999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|++|||||||+|||+.+++.+.++|+++++++ .|+|++||+++.+. .|||+
T Consensus 162 -------~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g----------~tilivsH~~~~~~-~~d~i---------- 213 (648)
T PRK10535 162 -------GGQVILADEPTGALDSHSGEEVMAILHQLRDRG----------HTVIIVTHDPQVAA-QAERV---------- 213 (648)
T ss_pred -------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHH-hCCEE----------
Confidence 699999999999999999999999999998765 59999999999875 58877
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+++++|++.+..
T Consensus 214 --------------------~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 214 --------------------IEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred --------------------EEEECCEEEeecCccccc
Confidence 999999999999888753
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-44 Score=331.53 Aligned_cols=192 Identities=23% Similarity=0.337 Sum_probs=165.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++|++++|+++.+++ +||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++... .+..++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~------~~~~~~ 73 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI------AKPYCT 73 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh------hhhhEE
Confidence 488999999998766665 9999999999999999999999999999999999999999999876431 122589
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|++|++.+++.+||+||+.+..... . ..+.+.++++.+++.+..++.+.+||||||||++|||||+.
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~------- 140 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIY-N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIAC------- 140 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhc-c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999988877899999998754221 1 13356778999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|++..+++ .|+|++||+++++.. +|.+
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSG----------GIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCccccch-hhee
Confidence 699999999999999999999999998776555 599999999998876 6643
No 305
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.1e-44 Score=374.79 Aligned_cols=252 Identities=21% Similarity=0.271 Sum_probs=193.8
Q ss_pred hhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEE
Q 016804 19 VSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVY 98 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 98 (382)
+..++..+++.. .....+....+|+.+....|....... . .+. .....|+++||+
T Consensus 275 ~~~pl~~l~~~~-----~~~~~~~~a~~ri~~l~~~~~~~~~~~----~---------------~~~-~~~~~i~~~~v~ 329 (547)
T PRK10522 275 LRTPLLSAVGAL-----PTLLSAQVAFNKLNKLALAPYKAEFPR----P---------------QAF-PDWQTLELRNVT 329 (547)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccccccccc----c---------------ccc-CcCceEEEEEEE
Confidence 345666555555 456677788888888765443111000 0 000 011249999999
Q ss_pred EEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC
Q 016804 99 KSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177 (382)
Q Consensus 99 ~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~ 177 (382)
|+|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|+++|+++....... . +.+|+||+|++.
T Consensus 330 f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~-~~~i~~v~q~~~ 407 (547)
T PRK10522 330 FAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPED-Y-RKLFSAVFTDFH 407 (547)
T ss_pred EEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHH-H-hhheEEEecChh
Confidence 99965 56999999999999999999999999999999999999999999999999987543222 2 336999999999
Q ss_pred CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----CCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----PSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
+|+ .|+++| + . ...++.+.++++.+++....+.. ..+||||||||++|||||++ +|
T Consensus 408 lf~-~ti~~n---~----~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~-------~~ 468 (547)
T PRK10522 408 LFD-QLLGPE---G----K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE-------ER 468 (547)
T ss_pred HHH-Hhhccc---c----C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc-------CC
Confidence 997 488887 1 1 11234567788899987654322 35899999999999999997 59
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 253 ~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
++|||||||++||+.+++.+.+.+.++.+ .+ +|+|+|||+++.+. .||++
T Consensus 469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~----------~tvi~itH~~~~~~-~~d~i------------------ 519 (547)
T PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMG----------KTIFAISHDDHYFI-HADRL------------------ 519 (547)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEEechHHHH-hCCEE------------------
Confidence 99999999999999999999999887654 34 59999999998765 57766
Q ss_pred CCCcccccccEEEEEeCCeEEEEecc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMT 357 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~ 357 (382)
++|++|++++....
T Consensus 520 ------------~~l~~G~i~e~~~~ 533 (547)
T PRK10522 520 ------------LEMRNGQLSELTGE 533 (547)
T ss_pred ------------EEEECCEEEEecCC
Confidence 99999999987533
No 306
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=378.66 Aligned_cols=204 Identities=24% Similarity=0.388 Sum_probs=179.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ .+
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-------------~~ 383 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-------------AN 383 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-------------eE
Confidence 45899999999999888999999999999999999999999999999999999999999999873 15
Q ss_pred EEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 169 IGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 169 Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
|||++|++. +++.+|+.+|+.+.. . .. ..++++.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~-- 455 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWR--Q--EG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ-- 455 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhc--c--CC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhc--
Confidence 999999974 566789999986521 1 11 1234578899999994 67899999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||++||+.++..+.+.|+++ . .|||+||||++++..+|||+
T Consensus 456 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-----------~tvi~vsHd~~~~~~~~d~i------------ 505 (530)
T PRK15064 456 -----KPNVLVMDEPTNHMDMESIESLNMALEKY--E-----------GTLIFVSHDREFVSSLATRI------------ 505 (530)
T ss_pred -----CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--C-----------CEEEEEeCCHHHHHHhCCEE------------
Confidence 69999999999999999999999999886 2 28999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
++|++|+++ +.|++.++.
T Consensus 506 ------------------~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 506 ------------------IEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred ------------------EEEECCeEEEcCCCHHHHH
Confidence 999999998 778776664
No 307
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.4e-44 Score=338.47 Aligned_cols=196 Identities=30% Similarity=0.481 Sum_probs=167.7
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCC--CCCHHHHHH
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD--SLTVRENVG 189 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~--~lTV~eni~ 189 (382)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+.+++|+||++.++. .+|+.+|+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-------~~~~i~~v~q~~~~~~~~~~tv~~~l~ 73 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-------GWRHIGYVPQRHEFAWDFPISVAHTVM 73 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH-------hhCcEEEecccccccCCCCccHHHHHH
Confidence 5789999999999999999999999999999999999999987421 1236999999987632 479999998
Q ss_pred hhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCH
Q 016804 190 FLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (382)
Q Consensus 190 ~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~ 266 (382)
++.....+ .......+++.++++.+++++..++++.+||||||||++|||||++ +|++|||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-------~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 74 SGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALAT-------RPSVLLLDEPFTGLDM 146 (223)
T ss_pred hccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEeCCcccCCH
Confidence 75321111 1122334568889999999988999999999999999999999997 6999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEE
Q 016804 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL 346 (382)
Q Consensus 267 ~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l 346 (382)
.++..+.+.|+++.+++ .|+|++|||++++.++||++ ++|
T Consensus 147 ~~~~~l~~~l~~~~~~~----------~tvii~sH~~~~~~~~~d~i------------------------------~~l 186 (223)
T TIGR03771 147 PTQELLTELFIELAGAG----------TAILMTTHDLAQAMATCDRV------------------------------VLL 186 (223)
T ss_pred HHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE------------------------------EEE
Confidence 99999999999998765 59999999999999999987 888
Q ss_pred eCCeEEEEeccccccc
Q 016804 347 YEGKIVWQGMTHEFTS 362 (382)
Q Consensus 347 ~~G~i~~~g~~~~~~~ 362 (382)
+|++++.|+++++..
T Consensus 187 -~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 187 -NGRVIADGTPQQLQD 201 (223)
T ss_pred -CCEEEeecCHHHhcC
Confidence 799999998888754
No 308
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.6e-44 Score=320.95 Aligned_cols=152 Identities=32% Similarity=0.599 Sum_probs=138.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+..+.+++|
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~-~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS-PRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC-HHHHHhcCeEE
Confidence 47899999999889999999999999999999999999999999999999999999999999876432 11222336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+|| ||||||||++|||||+. +
T Consensus 80 ~~q----------------------------------------------------LS~G~~qrl~laral~~-------~ 100 (163)
T cd03216 80 VYQ----------------------------------------------------LSVGERQMVEIARALAR-------N 100 (163)
T ss_pred EEe----------------------------------------------------cCHHHHHHHHHHHHHhc-------C
Confidence 999 99999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||++||+.+++.+.++|+++++++ .|+|++|||++++..+|||+
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~d~~ 152 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQG----------VAVIFISHRLDEVFEIADRV 152 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999999999999997665 59999999999999999988
No 309
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-44 Score=387.80 Aligned_cols=215 Identities=30% Similarity=0.500 Sum_probs=187.1
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--ccEEEECCEECCCCCChhhhccceEE
Q 016804 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 93 ~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~--sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
..+|++++|+++++|+|+|+++++||++||+|||||||||||++|+|+.+|+ +|+|.++|+++.. . . +.++|
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~-~-~~~i~ 143 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----Q-I-LKRTG 143 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----h-h-ccceE
Confidence 3677889998899999999999999999999999999999999999999985 8999999998531 1 1 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcccc-----cCCCCCCChHHHHHHHHHHHHhc
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVE-----DRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~~-----~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
||+|++.+++.+||+||+.+..... ...++++..++++++++.+||.+.. ++.+++|||||||||+|||||+.
T Consensus 144 yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~ 223 (659)
T PLN03211 144 FVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 223 (659)
T ss_pred EECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh
Confidence 9999999999999999999865322 1234455567789999999998765 44578899999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HHHHhhchhccccccccc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~~~~aDrv~~~~~~~~~ 322 (382)
+|+||+|||||+|||+.++..+.+.|++++++| +|||++||+++ .+.+++|++
T Consensus 224 -------~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~TvI~~sH~~~~~i~~~~D~i--------- 277 (659)
T PLN03211 224 -------NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKG----------KTIVTSMHQPSSRVYQMFDSV--------- 277 (659)
T ss_pred -------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCC----------CEEEEEecCCCHHHHHhhceE---------
Confidence 599999999999999999999999999998766 59999999998 588899887
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++..|+++++
T Consensus 278 ---------------------ilL~~G~iv~~G~~~~~ 294 (659)
T PLN03211 278 ---------------------LVLSEGRCLFFGKGSDA 294 (659)
T ss_pred ---------------------EEecCCcEEEECCHHHH
Confidence 99999999999987664
No 310
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=325.91 Aligned_cols=162 Identities=41% Similarity=0.680 Sum_probs=145.3
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ... .+.++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i 78 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD-LES-LRKNI 78 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC-HHH-HHhhE
Confidence 4789999999876 7999999999999999999999999999999999999999999999999865432 112 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+ .|++||+ ||||||||++|||||+.
T Consensus 79 ~~~~~~~~~~~-~t~~e~l--------------------------------------LS~G~~~rl~la~al~~------ 113 (171)
T cd03228 79 AYVPQDPFLFS-GTIRENI--------------------------------------LSGGQRQRIAIARALLR------ 113 (171)
T ss_pred EEEcCCchhcc-chHHHHh--------------------------------------hCHHHHHHHHHHHHHhc------
Confidence 99999998887 5999987 99999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++.+ + +|+|++|||++++.. ||++
T Consensus 114 -~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~~ 164 (171)
T cd03228 114 -DPPILILDEATSALDPETEALILEALRALAK-G----------KTVIVIAHRLSTIRD-ADRI 164 (171)
T ss_pred -CCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHHh-CCEE
Confidence 6999999999999999999999999999864 4 599999999999987 8887
No 311
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.9e-44 Score=412.47 Aligned_cols=223 Identities=27% Similarity=0.421 Sum_probs=187.6
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.|+++||+++|++ ..+|+||||+|++||.+||||+||||||||+++|+|+++|++|+|++||+|+..+.... . +.+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~-L-R~~ 1385 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRE-L-RRQ 1385 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHH-H-Hhc
Confidence 4999999999964 35999999999999999999999999999999999999999999999999987753333 2 346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaI 237 (382)
||||||+|.||+. ||++||... ...+ ++++.++++.++++++..+.| ..||||||||++|
T Consensus 1386 I~iVpQdp~LF~g-TIreNIdp~----~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaL 1456 (1560)
T PTZ00243 1386 FSMIPQDPVLFDG-TVRQNVDPF----LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCM 1456 (1560)
T ss_pred ceEECCCCccccc-cHHHHhCcc----cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHH
Confidence 9999999999985 999999642 1122 345778899999987655543 5799999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+++ +|+|||||||||+||+.+.+.+++.|++..++ +|+|+|+|+++++.. ||+|
T Consensus 1457 ARALL~~------~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~-----------~TvI~IAHRl~ti~~-~DrI---- 1514 (1560)
T PTZ00243 1457 ARALLKK------GSGFILMDEATANIDPALDRQIQATVMSAFSA-----------YTVITIAHRLHTVAQ-YDKI---- 1514 (1560)
T ss_pred HHHHhcC------CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCC-----------CEEEEEeccHHHHHh-CCEE----
Confidence 9999972 38999999999999999999999999987543 599999999999976 5655
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
+||++|+|++.|+++++....+....+++
T Consensus 1515 --------------------------lVLd~G~VvE~Gt~~eLl~~~~~~f~~l~ 1543 (1560)
T PTZ00243 1515 --------------------------IVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543 (1560)
T ss_pred --------------------------EEEECCEEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999998888754344444443
No 312
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.7e-44 Score=333.37 Aligned_cols=194 Identities=23% Similarity=0.339 Sum_probs=157.4
Q ss_pred EEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hhhccceE
Q 016804 93 DCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLRI 169 (382)
Q Consensus 93 ~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~~~~~~I 169 (382)
.+.|+.++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....+..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999997 46799999999999999999999999999999999999999999999999876432111 11122369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-----------ccCCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-----------EDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-----------~~~~~~~LSGGqrQRVaIA 238 (382)
+|++|++.+|+ .|++||+.+... ...+ ...++++.+++.+. .++++.+|||||||||+||
T Consensus 82 ~~~~q~~~~~~-~t~~~nl~~~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 82 AYAAQKPWLLN-ATVEENITFGSP----FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EEEcCCCcccc-ccHHHHHhhcCc----CCHH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999999885 799999987431 1221 22345556665432 3467899999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED--LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~--lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||+. +|++|||||||++||+.++..+++ +++.+.+++ .|+|++||+++.+. .||++
T Consensus 153 ral~~-------~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~----------~tii~~sH~~~~~~-~~d~i 211 (218)
T cd03290 153 RALYQ-------NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDK----------RTLVLVTHKLQYLP-HADWI 211 (218)
T ss_pred HHHhh-------CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCC----------CEEEEEeCChHHHh-hCCEE
Confidence 99997 699999999999999999999998 677766555 59999999999985 58877
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.8e-44 Score=376.45 Aligned_cols=208 Identities=29% Similarity=0.419 Sum_probs=177.7
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.+|+++||+++|+ ++++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. .+
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-------------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-------------IK 69 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CE
Confidence 5799999999998 778999999999999999999999999999999999999999999998751 15
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcC-------------CCCHHH----------------------HHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENS-------------KMRDEQ----------------------ISELVKENLAA 213 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~-------------~~~~~~----------------------~~~~v~~~L~~ 213 (382)
||||||++.+++.+||.||+.++..... .....+ ..+++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 9999999999999999999987532100 000010 12456678888
Q ss_pred cCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 016804 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (382)
Q Consensus 214 ~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~ 293 (382)
+|+.. .++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.+.|+++ +
T Consensus 150 ~~l~~-~~~~~~~LSgGqkqrv~la~al~~-------~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~---------- 208 (552)
T TIGR03719 150 LRCPP-WDADVTKLSGGERRRVALCRLLLS-------KPDMLLLDEPTNHLDAESVAWLEQHLQEY---P---------- 208 (552)
T ss_pred CCCCc-ccCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCCCCChHHHHHHHHHHHhC---C----------
Confidence 88854 688999999999999999999997 69999999999999999999999999876 2
Q ss_pred eEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 294 ASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 294 ~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
.|+|+||||++.+..+||++ ++|++|+++ +.|+..++.
T Consensus 209 ~tvIiisHd~~~~~~~~d~v------------------------------~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 209 GTVVAVTHDRYFLDNVAGWI------------------------------LELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CeEEEEeCCHHHHHhhcCeE------------------------------EEEECCEEEEecCCHHHHH
Confidence 28999999999999999988 999999975 778776654
No 314
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.6e-43 Score=340.59 Aligned_cols=210 Identities=25% Similarity=0.389 Sum_probs=170.0
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..+.|+++|+++. ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------------- 98 (282)
T cd03291 36 DDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------------- 98 (282)
T ss_pred CCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------------
Confidence 3456999999985 46799999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-----------cccCCCCCCChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----------VEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-----------~~~~~~~~LSGGqrQRVa 236 (382)
+|+|++|++.+|+. ||+||+.+... .... .+.++++.+++.+ ..++.+.+||||||||++
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~----~~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~ 169 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVS----YDEY----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhcccc----cCHH----HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHH
Confidence 38999999998884 99999987431 1111 1223344444433 233456799999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL-~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
|||||+. +|++|||||||++||+.++..+.+.+ +++.+ + .|||++||+++.+. .||++
T Consensus 170 lAraL~~-------~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~-~----------~tIiiisH~~~~~~-~~d~i-- 228 (282)
T cd03291 170 LARAVYK-------DADLYLLDSPFGYLDVFTEKEIFESCVCKLMA-N----------KTRILVTSKMEHLK-KADKI-- 228 (282)
T ss_pred HHHHHhc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHhhC-C----------CEEEEEeCChHHHH-hCCEE--
Confidence 9999997 69999999999999999999998754 56643 4 49999999999985 68877
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|++++.|++.++..........++
T Consensus 229 ----------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 257 (282)
T cd03291 229 ----------------------------LILHEGSSYFYGTFSELQSLRPDFSSKLM 257 (282)
T ss_pred ----------------------------EEEECCEEEEECCHHHHHhcchHHHHHHh
Confidence 99999999999988887644334444443
No 315
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-43 Score=405.61 Aligned_cols=242 Identities=26% Similarity=0.396 Sum_probs=187.9
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSF 112 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~---~~iL~~vsl 112 (382)
....++..+.+|+...+..++....... .. . .+... .|+++||+|+|++ .++|+|+||
T Consensus 346 ~~~~~a~~a~~ri~~ii~~~~~~~~~~~------~~--------~---~~~~~--~I~~~nVsf~Y~~~~~~~vL~~isl 406 (1466)
T PTZ00265 346 TEYMKSLEATNSLYEIINRKPLVENNDD------GK--------K---LKDIK--KIQFKNVRFHYDTRKDVEIYKDLNF 406 (1466)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCC------Cc--------c---CCCCC--cEEEEEEEEEcCCCCCCceeccceE
Confidence 3456777888889888877653211000 00 0 01111 4999999999975 369999999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-CCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI-RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i-~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~ 191 (382)
+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++.... ..+. +.+||||+|++.+|+ .||+|||.++
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~-~~~l-r~~Ig~V~Q~~~LF~-~TI~eNI~~g 483 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDIN-LKWW-RSKIGVVSQDPLLFS-NSIKNNIKYS 483 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCC-HHHH-HHhccEecccccchh-ccHHHHHHhc
Confidence 99999999999999999999999999999999999999 567765432 2222 336999999999998 5999999986
Q ss_pred HhhcCC---------C-----------------------------------------CHHHHHHHHHHHHHHcCCcccc-
Q 016804 192 LYENSK---------M-----------------------------------------RDEQISELVKENLAAVGLKGVE- 220 (382)
Q Consensus 192 ~~~~~~---------~-----------------------------------------~~~~~~~~v~~~L~~~gL~~~~- 220 (382)
...... . .....++.+.++++.++++++.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~ 563 (1466)
T PTZ00265 484 LYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVS 563 (1466)
T ss_pred CCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHH
Confidence 421000 0 0011235678889999887664
Q ss_pred ----------cCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCC
Q 016804 221 ----------DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLAN 289 (382)
Q Consensus 221 ----------~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~g~~~~~~ 289 (382)
.+.+.+||||||||++|||||++ +|+||||||||++||+.++..+++.|+++.+ +|
T Consensus 564 ~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~-------~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g------ 630 (1466)
T PTZ00265 564 ALPDKYETLVGSNASKLSGGQKQRISIARAIIR-------NPKILILDEATSSLDNKSEYLVQKTINNLKGNEN------ 630 (1466)
T ss_pred hCccccCceeCCCCCcCCHHHHHHHHHHHHHhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCC------
Confidence 34567899999999999999997 5999999999999999999999999999975 34
Q ss_pred CCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 290 PGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 290 ~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
+|+|+|||+++++ +.||+|++|+
T Consensus 631 ----~TvIiIsHrls~i-~~aD~Iivl~ 653 (1466)
T PTZ00265 631 ----RITIIIAHRLSTI-RYANTIFVLS 653 (1466)
T ss_pred ----CEEEEEeCCHHHH-HhCCEEEEEe
Confidence 5999999999998 5799986665
No 316
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.5e-43 Score=369.56 Aligned_cols=208 Identities=31% Similarity=0.478 Sum_probs=178.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~------------~~ 388 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T------------VK 388 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c------------eE
Confidence 4689999999999988999999999999999999999999999999999999999999999954 1 15
Q ss_pred EEEEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 169 IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 169 Ig~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
|||+||++ .+++.+||+||+.++.... ..... ...++++++.+++.. ..++++.+|||||||||+|||||+.
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--- 462 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDII-KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ--- 462 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccc-ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc---
Confidence 99999997 6888899999998764211 11111 123457899999974 5799999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|+++ .+ |+|+||||++++..+|||+
T Consensus 463 ----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-----------tvi~vtHd~~~~~~~~d~i------------- 512 (556)
T PRK11819 463 ----GGNVLLLDEPTNDLDVETLRALEEALLEF--PG-----------CAVVISHDRWFLDRIATHI------------- 512 (556)
T ss_pred ----CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-----------eEEEEECCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999987 23 8999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeC-CeEE-EEeccccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYE-GKIV-WQGMTHEFTS 362 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~-G~i~-~~g~~~~~~~ 362 (382)
++|++ |++. +.|+..++.+
T Consensus 513 -----------------~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 513 -----------------LAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred -----------------EEEECCCeEEEecCCHHHHHH
Confidence 89986 7876 5676666653
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.1e-43 Score=315.79 Aligned_cols=156 Identities=29% Similarity=0.458 Sum_probs=141.0
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-------------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-------------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-------------ceEE
Confidence 47899999995 467999999999999999999999999999999999999999999999873 2699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|++|++.++ ..|++||+.+. ++.+||||||||++|||||+.
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-------------------------------~~~~LS~G~~~rv~laral~~------- 108 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-------------------------------WDDVLSGGEQQRLAFARLLLH------- 108 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-------------------------------CCCCCCHHHHHHHHHHHHHHc-------
Confidence 999999876 47999999652 468999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|+++ + .|+|++|||++.+ .+|||+
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~----------~tiiivsh~~~~~-~~~d~i 157 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL---G----------ITVISVGHRPSLW-KFHDRV 157 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh---C----------CEEEEEeCChhHH-hhCCEE
Confidence 69999999999999999999999999886 3 4999999999865 588877
No 318
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.3e-43 Score=369.33 Aligned_cols=190 Identities=33% Similarity=0.507 Sum_probs=165.7
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++ + .
T Consensus 319 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~------------~ 385 (552)
T TIGR03719 319 GDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T------------V 385 (552)
T ss_pred CCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c------------e
Confidence 35689999999999988999999999999999999999999999999999999999999999954 1 1
Q ss_pred eEEEEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 168 RIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 168 ~Ig~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+|||+||++ .+++.+||.||+.++.... ..... ...+.++++.+++.. ..++++.+|||||||||+|||||+.
T Consensus 386 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~-- 460 (552)
T TIGR03719 386 KLAYVDQSRDALDPNKTVWEEISGGLDII-QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS-- 460 (552)
T ss_pred EEEEEeCCccccCCCCcHHHHHHhhcccc-ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh--
Confidence 599999997 4788899999998864211 11111 223557899999974 5799999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++. + |+|+||||++++.++|||+
T Consensus 461 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-----------~viivsHd~~~~~~~~d~i 510 (552)
T TIGR03719 461 -----GGNVLLLDEPTNDLDVETLRALEEALLEFA--G-----------CAVVISHDRWFLDRIATHI 510 (552)
T ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-----------eEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999872 3 8999999999999999988
No 319
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.5e-44 Score=326.12 Aligned_cols=235 Identities=31% Similarity=0.524 Sum_probs=207.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC-EECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG-RKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G-~~i~~~~~~~~~~~~~ 168 (382)
++++++||+++|++..+|+++||++.+||.-+|||||||||||+|..|.|..+|++|+|+++| .++..+ +...+.+..
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~-~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKL-PEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccC-CHHHHHHhc
Confidence 579999999999999999999999999999999999999999999999999999999999999 788765 455566667
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCC-------CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKM-------RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~-------~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
||-=||.|..|+.+||+||+.+.....+.. ...+-+++++++|+..||.+..++....||-||||++.|++-+
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence 999999999999999999999876432221 1233356799999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
++ +|++||||||+||+-.......-++|++++.. .+|++|.|||.+++.+|++|
T Consensus 163 ~Q-------~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~-----------hsilVVEHDM~Fvr~~A~~V-------- 216 (249)
T COG4674 163 AQ-------DPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-----------HSILVVEHDMGFVREIADKV-------- 216 (249)
T ss_pred cc-------CCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-----------ceEEEEeccHHHHHHhhhee--------
Confidence 98 59999999999999999999999999999876 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcCC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGS 375 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 375 (382)
-||++|.+..+|+.+++. .+|.+.+.|-|+
T Consensus 217 ----------------------TVlh~G~VL~EGsld~v~--~dp~ViEvYLGr 246 (249)
T COG4674 217 ----------------------TVLHEGSVLAEGSLDEVQ--NDPKVIEVYLGR 246 (249)
T ss_pred ----------------------EEEeccceeecccHHHhh--cCcceEeeeccc
Confidence 999999999999888875 355555555443
No 320
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-43 Score=373.38 Aligned_cols=203 Identities=27% Similarity=0.497 Sum_probs=177.3
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+.++|+++||+++|+++.+|+|+||+|.+||++||+||||||||||||+|+|+++|++|+|.+++. .
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~ 375 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-------------I 375 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-------------E
Confidence 456899999999999889999999999999999999999999999999999999999999999741 1
Q ss_pred eEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 168 RIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 168 ~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
+|||++|+. .+.+..|+.+++... ......+.+.++|+.+++. +..++++.+|||||||||+|||||+.
T Consensus 376 ~igy~~Q~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~- 447 (638)
T PRK10636 376 KLGYFAQHQLEFLRADESPLQHLARL-------APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ- 447 (638)
T ss_pred EEEEecCcchhhCCccchHHHHHHHh-------CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhc-
Confidence 599999985 356667888876421 1112345678899999996 47899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+||||||||++||+.++..+.++|+++ +| |||+||||++++.++|||+
T Consensus 448 ------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-----------tvi~vSHd~~~~~~~~d~i----------- 497 (638)
T PRK10636 448 ------RPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-----------ALVVVSHDRHLLRSTTDDL----------- 497 (638)
T ss_pred ------CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-----------eEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999987 33 8999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEE-EEeccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEF 360 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~ 360 (382)
++|++|+++ +.|+.+++
T Consensus 498 -------------------~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 498 -------------------YLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred -------------------EEEECCEEEEcCCCHHHH
Confidence 999999997 67877776
No 321
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.9e-43 Score=368.91 Aligned_cols=187 Identities=31% Similarity=0.419 Sum_probs=167.8
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+.++|+++|++++|++. .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ +
T Consensus 337 ~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~------------ 400 (590)
T PRK13409 337 RETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L------------ 400 (590)
T ss_pred CceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e------------
Confidence 45789999999999875 5999999999999999999999999999999999999999999985 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|||+||++.+++.+||+||+.++... ... ...+.++++.+++.+..++++.+|||||||||+|||||++
T Consensus 401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~---~~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~---- 470 (590)
T PRK13409 401 KISYKPQYIKPDYDGTVEDLLRSITDD---LGS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR---- 470 (590)
T ss_pred eEEEecccccCCCCCcHHHHHHHHhhh---cCh---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhc----
Confidence 489999999888889999999875321 111 2246789999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|++++++ + .|+|+||||++++..+|||+
T Consensus 471 ---~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tviivsHD~~~~~~~aDrv 524 (590)
T PRK13409 471 ---DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEERE----------ATALVVDHDIYMIDYISDRL 524 (590)
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 69999999999999999999999999999775 4 59999999999999999988
No 322
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3e-44 Score=321.35 Aligned_cols=201 Identities=31% Similarity=0.493 Sum_probs=175.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
.++++++.+.-++.++|+++||++++||+++|.||||||||||+|+++-|.+|++|+++|.|++++.+..+.. +.+|+
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~--Rq~Vs 80 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAY--RQQVS 80 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHH--HHHHH
Confidence 4677788777788999999999999999999999999999999999999999999999999999987654443 34799
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+.|.|.||+. ||+||+.|+...+.... ......+.++++++.+ .+++.+.+||||||||++|+|-|..
T Consensus 81 Y~~Q~paLfg~-tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~------ 150 (223)
T COG4619 81 YCAQTPALFGD-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF------ 150 (223)
T ss_pred HHHcCcccccc-chhhccccchHHhccCC---ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc------
Confidence 99999999985 99999999865432211 2344677899999964 7899999999999999999999987
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
-|+|||||||||+||+.+.+.+.++|.++.++.. .+++.||||-+++.+.+|++
T Consensus 151 -~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~---------vAv~WiTHd~dqa~rha~k~ 204 (223)
T COG4619 151 -MPKILLLDEITSALDESNKRNIEEMIHRYVREQN---------VAVLWITHDKDQAIRHADKV 204 (223)
T ss_pred -CCceEEecCchhhcChhhHHHHHHHHHHHhhhhc---------eEEEEEecChHHHhhhhheE
Confidence 4999999999999999999999999999975432 69999999999999999988
No 323
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.9e-43 Score=318.17 Aligned_cols=237 Identities=31% Similarity=0.508 Sum_probs=210.1
Q ss_pred ceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC
Q 016804 90 VLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~ 160 (382)
+.++++|++|.|.. ..+++.|||++++|+.+||||.||||||||.|+|+|+++|++|+|++||+.+.. .
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~--~ 80 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF--G 80 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc--c
Confidence 46899999999843 358999999999999999999999999999999999999999999999998753 2
Q ss_pred hhhhccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHH
Q 016804 161 DEEISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaI 237 (382)
+...+..+|-++||+|+ +.|.+.+.+-+..++.....+.++...+++.+.|+.+||- +..+-+|..||-||||||++
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaL 160 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVAL 160 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHH
Confidence 33223346999999985 7788888888888887777788888889999999999995 67899999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+- +|+|+|.||..++||...+.++.+++-+|.++-+ .+.|.|+.++..+..++|.|
T Consensus 161 ARALIL-------~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~G---------iSyiYV~QhlG~iKHi~D~v---- 220 (267)
T COG4167 161 ARALIL-------RPKIIIADEALASLDMSMRSQLINLMLELQEKQG---------ISYIYVTQHIGMIKHISDQV---- 220 (267)
T ss_pred HHHHhc-------CCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhC---------ceEEEEechhhHhhhhcccE----
Confidence 999996 6999999999999999999999999999987632 69999999999999999987
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+||++|++++.|.+++++ .+.++.++.+...
T Consensus 221 --------------------------iVM~EG~vvE~G~t~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 221 --------------------------LVMHEGEVVERGSTADVLASPLHELTKRLIES 252 (267)
T ss_pred --------------------------EEEecCceeecCChhhhhcCCccHHHHHHHHH
Confidence 999999999999999975 6788888877664
No 324
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.2e-43 Score=337.04 Aligned_cols=194 Identities=28% Similarity=0.426 Sum_probs=164.9
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEECCCCCChh
Q 016804 95 RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDE 162 (382)
Q Consensus 95 ~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~-----------i~G~~i~~~~~~~ 162 (382)
.||+|+|+++ .+|+|+|+ +++||+++|+||||||||||||+|+|+++|++|+|+ ++|+++.......
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4799999865 59999995 999999999999999999999999999999999996 7787764321111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
......++|++|+..+++ .++.+|+.+.+ ......+.+.++++.+|+.+..++.+.+||||||||++|||||+
T Consensus 83 ~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 155 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIP-KAVKGKVGELL------KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA 155 (255)
T ss_pred hhcccceeeecchhccCc-hHHHHHHHHHh------chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 111224899999998888 48888887643 12233456788999999998889999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
. +|+++||||||++||+.++..+.++|+++.+++ .|+|++|||++.+.++||++
T Consensus 156 ~-------~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~----------~tIIiiSHd~~~~~~~ad~i 209 (255)
T cd03236 156 R-------DADFYFFDEPSSYLDIKQRLNAARLIRELAEDD----------NYVLVVEHDLAVLDYLSDYI 209 (255)
T ss_pred h-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEE
Confidence 7 599999999999999999999999999998765 59999999999999999988
No 325
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.9e-42 Score=396.13 Aligned_cols=221 Identities=25% Similarity=0.449 Sum_probs=186.3
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.|+++||+++|+. .++|+||||+|++||.+||+|+||||||||+++|+|+++ ++|+|++||.++....... . +.+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~-l-R~~ 1293 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQT-W-RKA 1293 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHH-H-Hhc
Confidence 4999999999963 679999999999999999999999999999999999997 7999999999987653332 2 337
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaI 237 (382)
|+||||+|.+|+. ||++||.... ..+ ++++.++|++++|.++..+.| ..||||||||++|
T Consensus 1294 is~IpQdp~LF~G-TIR~NLdp~~----~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~L 1364 (1490)
T TIGR01271 1294 FGVIPQKVFIFSG-TFRKNLDPYE----QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364 (1490)
T ss_pred eEEEeCCCccCcc-CHHHHhCccc----CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHH
Confidence 9999999999985 9999995421 122 345778899999977665554 3799999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||++ +|+|||||||||+||+.+...+++.|++..++ +|+|+|||+++.+.. ||||
T Consensus 1365 ARALLr-------~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~-----------~TvI~IaHRl~ti~~-~DrI---- 1421 (1490)
T TIGR01271 1365 ARSILS-------KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSN-----------CTVILSEHRVEALLE-CQQF---- 1421 (1490)
T ss_pred HHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEecCHHHHHh-CCEE----
Confidence 999997 59999999999999999999999999987543 599999999999986 6666
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|+|++.|++.++... +....+++.
T Consensus 1422 --------------------------lvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~ 1450 (1490)
T TIGR01271 1422 --------------------------LVIEGSSVKQYDSIQKLLNE-TSLFKQAMS 1450 (1490)
T ss_pred --------------------------EEEECCEEEEeCCHHHHHcC-CcHHHHHHH
Confidence 99999999999999888753 444444443
No 326
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-42 Score=331.32 Aligned_cols=174 Identities=29% Similarity=0.418 Sum_probs=150.8
Q ss_pred eeeeEeeeEEEe-----CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 104 KHILRGVSFKIR-----HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 104 ~~iL~~vsl~i~-----~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
.+.+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|+ +|+|++|++.+
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--------------~i~~~~q~~~~ 72 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--------------TVSYKPQYIKA 72 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--------------eEEEecccccC
Confidence 345666777665 79999999999999999999999999999999999883 48999999887
Q ss_pred CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe
Q 016804 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD 258 (382)
++.+||.||+.+...... .. .+...++++.+++.+..++++.+|||||||||+|||||+. +|+++|||
T Consensus 73 ~~~~tv~e~l~~~~~~~~--~~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~-------~p~llllD 140 (246)
T cd03237 73 DYEGTVRDLLSSITKDFY--TH---PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK-------DADIYLLD 140 (246)
T ss_pred CCCCCHHHHHHHHhhhcc--cc---HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEe
Confidence 667899999976432111 11 2235678999999988999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 259 EPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 259 EPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||++||+.++..+.++|++++++ + +|+|+||||++++..+|||+
T Consensus 141 EPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiiivsHd~~~~~~~~d~i 186 (246)
T cd03237 141 EPSAYLDVEQRLMASKVIRRFAENNE----------KTAFVVEHDIIMIDYLADRL 186 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999999999765 4 59999999999999999988
No 327
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.9e-42 Score=369.23 Aligned_cols=191 Identities=27% Similarity=0.420 Sum_probs=166.4
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.+.++|+++||+++|+++++|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|++ |.+
T Consensus 315 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~------------ 381 (635)
T PRK11147 315 SGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK------------ 381 (635)
T ss_pred CCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC------------
Confidence 3467899999999999889999999999999999999999999999999999999999999998 532
Q ss_pred ceEEEEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 167 LRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 167 ~~Ig~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+|||++|++ .+++.+||.||+.+..... ... ...+.+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 382 ~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~- 457 (635)
T PRK11147 382 LEVAYFDQHRAELDPEKTVMDNLAEGKQEV-MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK- 457 (635)
T ss_pred cEEEEEeCcccccCCCCCHHHHHHhhcccc-ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc-
Confidence 1599999986 5888899999998753211 011 1134577889999996 56899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|+++ .+ |||+||||++++..+||++
T Consensus 458 ------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~-----------tvi~vSHd~~~~~~~~d~i 507 (635)
T PRK11147 458 ------PSNLLILDEPTNDLDVETLELLEELLDSY--QG-----------TVLLVSHDRQFVDNTVTEC 507 (635)
T ss_pred ------CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-----------eEEEEECCHHHHHHhcCEE
Confidence 69999999999999999999999999876 32 8999999999999999988
No 328
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-43 Score=328.23 Aligned_cols=224 Identities=30% Similarity=0.430 Sum_probs=190.0
Q ss_pred CCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
...+++|+++||+++|+++++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+....-....++
T Consensus 26 ~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el- 104 (257)
T COG1119 26 EINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL- 104 (257)
T ss_pred CCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH-
Confidence 3456789999999999999999999999999999999999999999999999999999999999999987543222333
Q ss_pred cceEEEEecC--CCCCCCCCHHHHHHhhHhhcCC----CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHH
Q 016804 166 GLRIGLVFQS--AALFDSLTVRENVGFLLYENSK----MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 166 ~~~Ig~V~Q~--~~l~~~lTV~eni~~~~~~~~~----~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
+++||||.-. ..+.+..+|+|-|.-+.+..-+ ...++..+++..+++.+|+.+.++++..+||-||||||.|||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHH
Confidence 3479999864 3345567888888665432111 123455677889999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||++ +|++|||||||+|||..+++.+.+.|.++... +. .++|+|||..+++....+++
T Consensus 185 ALv~-------~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~---------~~ll~VtHh~eEi~~~~th~----- 243 (257)
T COG1119 185 ALVK-------DPELLILDEPAQGLDLIAREQLLNRLEELAASPGA---------PALLFVTHHAEEIPPCFTHR----- 243 (257)
T ss_pred HHhc-------CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCC---------ceEEEEEcchhhcccccceE-----
Confidence 9998 59999999999999999999999999999765 21 48999999999999887766
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
+.+++|+++.+|.
T Consensus 244 -------------------------lll~~g~v~~~g~ 256 (257)
T COG1119 244 -------------------------LLLKEGEVVAQGK 256 (257)
T ss_pred -------------------------EEeeCCceeeccc
Confidence 9999999999883
No 329
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.8e-42 Score=351.12 Aligned_cols=261 Identities=29% Similarity=0.485 Sum_probs=209.5
Q ss_pred HHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEe
Q 016804 17 KSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRN 96 (382)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~n 96 (382)
.....|++.+-..+ ..+-.++++-+|+...+..-+.....-.. |.+.+. |.+++
T Consensus 286 gRaLaPid~aI~~W-----kq~~~Ar~s~~Rl~~lL~~~p~~~~~m~L-------------------P~P~g~--L~Ve~ 339 (580)
T COG4618 286 GRALAPIDLAIANW-----KQFVAARQSYKRLNELLAELPAAAERMPL-------------------PAPQGA--LSVER 339 (580)
T ss_pred hhhhccHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCccccCCCCC-------------------CCCCce--eeEee
Confidence 34456666544444 45667888889998887664422222111 222333 89999
Q ss_pred EEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEec
Q 016804 97 VYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174 (382)
Q Consensus 97 vs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q 174 (382)
+++.=+ .+++|+++||++.+||.+|||||||||||||.|+|.|.++|.+|.|++||.++..+..+. -.++|||+||
T Consensus 340 l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~--lG~hiGYLPQ 417 (580)
T COG4618 340 LTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ--LGRHIGYLPQ 417 (580)
T ss_pred eeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH--hccccCcCcc
Confidence 998553 367999999999999999999999999999999999999999999999999998875433 3457999999
Q ss_pred CCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhc
Q 016804 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIF 243 (382)
Q Consensus 175 ~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~ 243 (382)
+..||+. ||.|||+-. .++...+.+-++.+..|.+++.-+.| ..||||||||++|||||..
T Consensus 418 dVeLF~G-TIaeNIaRf-------~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 418 DVELFDG-TIAENIARF-------GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred cceecCC-cHHHHHHhc-------cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 9999996 999999642 22222344667788888877766666 6899999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|.+++||||-|+||...+..+.+.|.+++++| .|+|+|||+.+.+. .+|+|
T Consensus 490 -------~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG----------~~vvviaHRPs~L~-~~Dki---------- 541 (580)
T COG4618 490 -------DPFLVVLDEPNSNLDSEGEAALAAAILAAKARG----------GTVVVIAHRPSALA-SVDKI---------- 541 (580)
T ss_pred -------CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHh-hccee----------
Confidence 599999999999999999999999999999887 59999999998876 45655
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++...|+.+|++
T Consensus 542 --------------------lvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 542 --------------------LVLQDGRIAAFGPREEVL 559 (580)
T ss_pred --------------------eeecCChHHhcCCHHHHH
Confidence 999999999999777764
No 330
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-42 Score=365.77 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=171.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+||++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.++|.. +|+
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-------------~i~ 67 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-------------QLA 67 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-------------EEE
Confidence 5899999999999999999999999999999999999999999999999999999999998731 488
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhh-----------------------c---CCCCHHHHHHHHHHHHHHcCCc-ccccCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYE-----------------------N---SKMRDEQISELVKENLAAVGLK-GVEDRL 223 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~-----------------------~---~~~~~~~~~~~v~~~L~~~gL~-~~~~~~ 223 (382)
|++|++..+. .|+.+++...... . ......+..+++.++++.+|+. +..+++
T Consensus 68 ~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 8888654443 4665554321000 0 0001112345688899999997 578999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
+.+|||||||||+|||||+. +|+||||||||++||+.++..+.+.|+++ + .|||+||||+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~-------~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~----------~tviivsHd~ 206 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALIC-------RSDLLLLDEPTNHLDLDAVIWLEKWLKSY---Q----------GTLILISHDR 206 (638)
T ss_pred hhhcCHHHHHHHHHHHHHcc-------CCCEEEEcCCCCcCCHHHHHHHHHHHHhC---C----------CeEEEEeCCH
Confidence 99999999999999999997 69999999999999999999999998876 2 3899999999
Q ss_pred HHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 304 STIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 304 ~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
+++.++|||+ ++|++|+++ +.|+.+.+.
T Consensus 207 ~~l~~~~d~i------------------------------~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 207 DFLDPIVDKI------------------------------IHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred HHHHHhcCEE------------------------------EEEeCCEEEEecCCHHHHH
Confidence 9999999988 999999996 467655543
No 331
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=4.8e-42 Score=319.88 Aligned_cols=190 Identities=22% Similarity=0.283 Sum_probs=159.7
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-ECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~-i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+ .+.|.+.+|+.+|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~---------------~~~~~~~l~~~lt 65 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL---------------PLGANSFILPGLT 65 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee---------------ccccccccCCcCc
Confidence 379999999999999999999999999999999999999999997 776431 1234567888999
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag 263 (382)
+.||+.+....+ +...++.. ..+.+.+++....++++.+||||||||++|||||+. +|+++||||||++
T Consensus 66 v~enl~~~~~~~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~-------~p~llllDEP~~~ 134 (213)
T PRK15177 66 GEENARMMASLY-GLDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLL-------PCRLYIADGKLYT 134 (213)
T ss_pred HHHHHHHHHHHc-CCCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhc-------CCCEEEECCCCcc
Confidence 999998865432 23333322 234566788888899999999999999999999997 6999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEE
Q 016804 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343 (382)
Q Consensus 264 LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 343 (382)
+|+.++..+.+.+.+..++ .|+|++||+++++..+||++
T Consensus 135 lD~~~~~~~~~~l~~~~~~-----------~~ii~vsH~~~~~~~~~d~i------------------------------ 173 (213)
T PRK15177 135 GDNATQLRMQAALACQLQQ-----------KGLIVLTHNPRLIKEHCHAF------------------------------ 173 (213)
T ss_pred CCHHHHHHHHHHHHHHhhC-----------CcEEEEECCHHHHHHhcCee------------------------------
Confidence 9999999999988665443 37999999999999999988
Q ss_pred EEEeCCeEEEEecccccc
Q 016804 344 IFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 344 i~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.++.++..
T Consensus 174 ~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 174 GVLLHGKITMCEDLAQAT 191 (213)
T ss_pred EEEECCeEEEeCCHHHHH
Confidence 999999999999777653
No 332
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.1e-41 Score=386.77 Aligned_cols=219 Identities=26% Similarity=0.440 Sum_probs=189.6
Q ss_pred CcceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEECCCCCC
Q 016804 88 GDVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~---p~sG~I~i~G~~i~~~~~ 160 (382)
+..+++++||+++|+ ++.+|+|||+++++||++||+|||||||||||++|+|+.+ |++|+|+++|+++..
T Consensus 756 ~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 756 GEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred CCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---
Confidence 345689999999995 4679999999999999999999999999999999999998 789999999998631
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC--CCCHHHHHHHHHHHHHHcCCcccccCCCC----CCChHHHHH
Q 016804 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS----ELSGGMKKR 234 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~L~~~gL~~~~~~~~~----~LSGGqrQR 234 (382)
. . ++++|||+|++.+++.+||+||+.+....+. ..+.++..++++++++.++|.+..++.+. +||||||||
T Consensus 833 -~-~-~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqR 909 (1394)
T TIGR00956 833 -S-F-QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR 909 (1394)
T ss_pred -h-h-hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhH
Confidence 1 1 3369999999888889999999998754321 23445566788999999999988888887 799999999
Q ss_pred HHHHHHHhcCCCCCCCCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHH-HHHhhch
Q 016804 235 VALARSIIFDNTKESVEPE-VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST-IRRAVDR 312 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~-iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~-~~~~aDr 312 (382)
|+|||||+. +|+ ||+|||||+|||+.++..+++.|++++++| .|||+++|+++. +.+.+||
T Consensus 910 l~Ia~aL~~-------~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g----------~tvI~t~H~~~~~~~~~~D~ 972 (1394)
T TIGR00956 910 LTIGVELVA-------KPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHG----------QAILCTIHQPSAILFEEFDR 972 (1394)
T ss_pred HHHHHHHHc-------CCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC----------CEEEEEecCCCHHHHHhcCE
Confidence 999999997 597 999999999999999999999999998776 599999999987 4567887
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCC-eEEEEecccc
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEG-KIVWQGMTHE 359 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G-~i~~~g~~~~ 359 (382)
+ ++|++| ++++.|++.+
T Consensus 973 v------------------------------l~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 973 L------------------------------LLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred E------------------------------EEEcCCCEEEEECCccc
Confidence 7 999987 9999997643
No 333
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-42 Score=308.69 Aligned_cols=242 Identities=31% Similarity=0.485 Sum_probs=196.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE-----CCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-----RAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~-----i~~~~~~~~ 163 (382)
.|.+++++++|.||....+++|||++.+||+.||||.|||||||||+||++-+.|++|+|.+.-++ +..+...+.
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 367999999999999999999999999999999999999999999999999999999999996532 222211111
Q ss_pred --hccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHH
Q 016804 164 --ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 164 --~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIA 238 (382)
+.+...|||.|+|. |-...+...||..-+.......-..++..+.+||+++.++ ...+..|.++|||||||+.||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiA 163 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHH
Confidence 11224899999984 4333344445533221111111234566678899999996 578999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|-|+. .|+++++||||.|||...+..++++++.|..+-+ .++++||||+..+.-++||.
T Consensus 164 RnLVt-------~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~---------la~viVTHDl~VarLla~rl----- 222 (258)
T COG4107 164 RNLVT-------RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG---------LAVVIVTHDLAVARLLADRL----- 222 (258)
T ss_pred HHhcc-------CCceEEecCCCCCcchhhHHHHHHHHHHHHHhcC---------ceEEEEechhHHHHHhhhcc-----
Confidence 99996 6999999999999999999999999999987742 58999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
.+|++|+++++|-++.++ .+.+|+++-+.+..+
T Consensus 223 -------------------------mvmk~g~vve~GLTDrvLDDP~hPYTQLLVSsvL 256 (258)
T COG4107 223 -------------------------MVMKQGQVVESGLTDRVLDDPHHPYTQLLVSSVL 256 (258)
T ss_pred -------------------------eeecCCCEeccccccccccCCCCchHHHHHHHhc
Confidence 999999999999988876 578999988776543
No 334
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-42 Score=349.01 Aligned_cols=214 Identities=29% Similarity=0.482 Sum_probs=180.9
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
-|+++||+|.|. ++++|+||||++.+|+.+|||||||+||||++|+|.++++.++|.|+|||+|+....... -|..|
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~S--LRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSS--LRSSI 614 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHH--HHHhc
Confidence 399999999995 688999999999999999999999999999999999999999999999999986542222 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIA 238 (382)
|.||||..||++ |+..||.++. ...+ .+++.++.+..++++..-..| -.||||||||||||
T Consensus 615 GVVPQDtvLFNd-TI~yNIryak---~~As----neevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 615 GVVPQDTVLFND-TILYNIRYAK---PSAS----NEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred CcccCcceeecc-eeeeheeecC---CCCC----hHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 999999999975 9999998853 1222 334556666666665544444 47999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|++++ .|.+++|||.||+||..+++.++..|.+++.. +|.|+|.|+++++-+.
T Consensus 687 RtiLK-------~P~iIlLDEATSALDT~tER~IQaaL~rlca~-----------RTtIVvAHRLSTivnA--------- 739 (790)
T KOG0056|consen 687 RTILK-------APSIILLDEATSALDTNTERAIQAALARLCAN-----------RTTIVVAHRLSTIVNA--------- 739 (790)
T ss_pred HHHhc-------CCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-----------CceEEEeeeehheecc---------
Confidence 99998 49999999999999999999999999999876 4899999999999874
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
|.|+++++|+|++.|..+|+...
T Consensus 740 ----------------------D~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 740 ----------------------DLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred ----------------------cEEEEEeCCeEeecCcHHHHHhc
Confidence 45599999999999966666544
No 335
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.4e-41 Score=361.60 Aligned_cols=207 Identities=29% Similarity=0.476 Sum_probs=181.4
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
+++++|+|+|+++++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++.. .. .+..+|||+|++.+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~----~~-~~~~i~yv~Q~~~~ 110 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA----KE-MRAISAYVQQDDLF 110 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH----HH-Hhhhceeecccccc
Confidence 3577999999999999999999999999999999999999885 8999999998531 12 23369999999999
Q ss_pred CCCCCHHHHHHhhHhhcC--CCCHHHHHHHHHHHHHHcCCcccccCCCC------CCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 179 FDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS------ELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~L~~~gL~~~~~~~~~------~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
++.+||+||+.|+..... ....++..++++++++.+||.+..++.+. .|||||||||+|||||+.
T Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~------- 183 (617)
T TIGR00955 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT------- 183 (617)
T ss_pred CccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc-------
Confidence 999999999999764321 23456667789999999999988888876 599999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|+|||||+|||+.+...+.+.|++++++| +|+|+++|+.+ ++.+++|++
T Consensus 184 ~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g----------~tvi~~~hq~~~~i~~~~D~i---------------- 237 (617)
T TIGR00955 184 DPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG----------KTIICTIHQPSSELFELFDKI---------------- 237 (617)
T ss_pred CCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCC----------CEEEEEeCCCCHHHHHHhceE----------------
Confidence 599999999999999999999999999998766 59999999995 788899888
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++++|+++++
T Consensus 238 --------------~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 238 --------------ILMAEGRVAYLGSPDQA 254 (617)
T ss_pred --------------EEeeCCeEEEECCHHHH
Confidence 99999999999988764
No 336
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.9e-41 Score=361.57 Aligned_cols=189 Identities=23% Similarity=0.292 Sum_probs=159.1
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-------------~~~ 516 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-------------KGK 516 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-------------CCc
Confidence 3699999999995 56799999999999999999999999999999999999999999998764 125
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC---------CCCChHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP---------SELSGGMKKRVALAR 239 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~---------~~LSGGqrQRVaIAr 239 (382)
|+||||++.+|+. |++||+.++............++++.++++.++++++.+++. .+||||||||++|||
T Consensus 517 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 517 LFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred EEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 9999999999986 999999876421100001112345678899999987776643 799999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
||++ +|++|||||||++||+.++..+.+.+++. + .|+|+|||+++.+ +.||++
T Consensus 596 al~~-------~p~illLDEpts~LD~~~~~~l~~~l~~~---~----------~tvI~isH~~~~~-~~~d~i 648 (659)
T TIGR00954 596 LFYH-------KPQFAILDECTSAVSVDVEGYMYRLCREF---G----------ITLFSVSHRKSLW-KYHEYL 648 (659)
T ss_pred HHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHc---C----------CEEEEEeCchHHH-HhCCEE
Confidence 9997 69999999999999999999999988763 4 4999999999987 568877
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.2e-41 Score=358.92 Aligned_cols=206 Identities=30% Similarity=0.426 Sum_probs=168.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-------------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-------------IVA 69 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-------------EEE
Confidence 6999999999999899999999999999999999999999999999999999999999998631 367
Q ss_pred EEecCCCCCCCCCHHHHHHhhH------------------------------hh---cCCCCHHHHHHHHHHHHHHcCCc
Q 016804 171 LVFQSAALFDSLTVRENVGFLL------------------------------YE---NSKMRDEQISELVKENLAAVGLK 217 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~------------------------------~~---~~~~~~~~~~~~v~~~L~~~gL~ 217 (382)
|++|++......++.+++..+. .. ..........+++.++++.+|+.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 7777653333345555542110 00 00000112345678899999997
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE
Q 016804 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297 (382)
Q Consensus 218 ~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiI 297 (382)
.++++.+|||||||||+|||||+. +|+||||||||++||+.++..+.++|+++. + |||
T Consensus 150 --~~~~~~~LSgGekqRv~LAraL~~-------~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~-----------tvl 207 (635)
T PRK11147 150 --PDAALSSLSGGWLRKAALGRALVS-------NPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--G-----------SII 207 (635)
T ss_pred --CCCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCCccCHHHHHHHHHHHHhCC--C-----------EEE
Confidence 388999999999999999999997 699999999999999999999999998872 2 899
Q ss_pred EEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEE-Eecccccc
Q 016804 298 VVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVW-QGMTHEFT 361 (382)
Q Consensus 298 ivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~-~g~~~~~~ 361 (382)
+||||..++.++||+| ++|++|+++. .|+..++.
T Consensus 208 ivsHd~~~l~~~~d~i------------------------------~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 208 FISHDRSFIRNMATRI------------------------------VDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred EEeCCHHHHHHhcCeE------------------------------EEEECCEEEEecCCHHHHH
Confidence 9999999999999988 9999999974 57666543
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.3e-41 Score=360.91 Aligned_cols=203 Identities=28% Similarity=0.481 Sum_probs=170.2
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|++++. .
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-------------~ 572 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-------------V 572 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-------------e
Confidence 468999999999964 56999999999999999999999999999999999999999999998652 2
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhh-cCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYE-NSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~-~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+|||++|++. +.+++.+|..+.... ..... .+.+.++|+.+|+. +..++++.+|||||||||+|||||+.
T Consensus 573 ~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~-- 644 (718)
T PLN03073 573 RMAVFSQHHV--DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-- 644 (718)
T ss_pred eEEEEecccc--ccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc--
Confidence 5999999862 345666665432211 11122 34577899999997 46789999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||++||+.++..+.+.|.++ ++ |+|+||||++++..+|||+
T Consensus 645 -----~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-----------tvIivSHd~~~i~~~~drv------------ 694 (718)
T PLN03073 645 -----KPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-----------GVLMVSHDEHLISGSVDEL------------ 694 (718)
T ss_pred -----CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-----------EEEEEECCHHHHHHhCCEE------------
Confidence 69999999999999999999988887664 33 8999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEE-EEeccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEF 360 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~ 360 (382)
++|++|+++ +.|+..++
T Consensus 695 ------------------~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 695 ------------------WVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred ------------------EEEECCEEEEeCCCHHHH
Confidence 999999998 66755443
No 339
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=9.3e-41 Score=293.57 Aligned_cols=137 Identities=36% Similarity=0.647 Sum_probs=129.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|++.++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ ..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-------------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-------------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-------------EEEEE
Confidence 47899999998888999999999999999999999999999999999999999999999984 15999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+|| ||+||+||++|||||+. +
T Consensus 68 ~~~----------------------------------------------------lS~G~~~rv~laral~~-------~ 88 (144)
T cd03221 68 FEQ----------------------------------------------------LSGGEKMRLALAKLLLE-------N 88 (144)
T ss_pred Ecc----------------------------------------------------CCHHHHHHHHHHHHHhc-------C
Confidence 999 99999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+++||||||++||+.++..+.+.|+++ + .|+|++||+++++..+||++
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~---~----------~til~~th~~~~~~~~~d~v 137 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY---P----------GTVILVSHDRYFLDQVATKI 137 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc---C----------CEEEEEECCHHHHHHhCCEE
Confidence 9999999999999999999999999887 2 39999999999999999988
No 340
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-40 Score=382.11 Aligned_cols=234 Identities=29% Similarity=0.445 Sum_probs=186.7
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSF 112 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~---~~iL~~vsl 112 (382)
.....+....+|+...+..+......+. +.......|+++|++|+|+. +++|+|+||
T Consensus 579 ~~~~~a~~s~~RI~~~L~~~e~~~~~~~--------------------~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl 638 (1622)
T PLN03130 579 TQAVNANVSLKRLEELLLAEERVLLPNP--------------------PLEPGLPAISIKNGYFSWDSKAERPTLSNINL 638 (1622)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccCC--------------------cccCCCCceEEEeeEEEccCCCCCceeeceeE
Confidence 4566778888999988876643211110 00001124999999999964 579999999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s-G~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~ 191 (382)
+|++||.++|+||||||||||+++|+|+++|++ |+|.+.| +|+||+|+|.+|+ .||+|||.|+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~---------------~Iayv~Q~p~Lfn-gTIreNI~fg 702 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG---------------TVAYVPQVSWIFN-ATVRDNILFG 702 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC---------------eEEEEcCccccCC-CCHHHHHhCC
Confidence 999999999999999999999999999999999 9998543 5999999999997 5999999986
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC
Q 016804 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (382)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP 260 (382)
.. .+ ++++.++++.++|.+..+..| ..|||||||||+||||+.+ +|+|+|||||
T Consensus 703 ~~----~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~-------~~~IlLLDEp 767 (1622)
T PLN03130 703 SP----FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS-------NSDVYIFDDP 767 (1622)
T ss_pred Cc----cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC-------CCCEEEECCC
Confidence 31 22 345677888888866555443 5799999999999999997 5999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCccccc
Q 016804 261 TAGLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFF 339 (382)
Q Consensus 261 tagLD~~~~~~l~-~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (382)
||+||+...+.+. +.++.+. ++ +|+|+|||+++.+.. ||+|
T Consensus 768 tSALD~~~~~~I~~~~l~~~l-~~----------kTvIlVTH~l~~l~~-aD~I-------------------------- 809 (1622)
T PLN03130 768 LSALDAHVGRQVFDKCIKDEL-RG----------KTRVLVTNQLHFLSQ-VDRI-------------------------- 809 (1622)
T ss_pred ccccCHHHHHHHHHHHhhHHh-cC----------CEEEEEECCHhHHHh-CCEE--------------------------
Confidence 9999999988775 4566553 33 599999999988654 6766
Q ss_pred ccEEEEEeCCeEEEEeccccccc
Q 016804 340 IYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 340 ~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+|+++|+.+++..
T Consensus 810 ----i~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 810 ----ILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred ----EEEeCCEEEEeCCHHHHHh
Confidence 9999999999998777653
No 341
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.2e-41 Score=310.01 Aligned_cols=221 Identities=32% Similarity=0.446 Sum_probs=184.4
Q ss_pred eEEEEeEEEEeC-----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFG-----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg-----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
|+++.|+.+.|. .+++|+++||+|++|+++.|+|.||||||||++.|+|-+.|++|+|.|+|.++....... +
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~--R 78 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK--R 78 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHH--H
Confidence 467888888884 257999999999999999999999999999999999999999999999999987653222 2
Q ss_pred cceEEEEecCCC--CCCCCCHHHHHHhhHhh--cCCCCH---HHHHHHHHHHHHHc--CCcccccCCCCCCChHHHHHHH
Q 016804 166 GLRIGLVFQSAA--LFDSLTVRENVGFLLYE--NSKMRD---EQISELVKENLAAV--GLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 166 ~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~--~~~~~~---~~~~~~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVa 236 (382)
...++-|||+|. .++.+||+||+.+.... .++... ....+...+.++.+ ||+..++.+..-|||||||-++
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 235889999984 69999999999886533 112222 22233344556665 4578889999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
+++|-++ .|+||+|||-||+|||.....++++=.++.++.+ .|.+||||+|+.+.+|.+|.
T Consensus 159 L~MAtl~-------~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~k---------lTtlMVTHnm~~Al~yG~Rl--- 219 (263)
T COG1101 159 LLMATLH-------PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK---------LTTLMVTHNMEDALDYGNRL--- 219 (263)
T ss_pred HHHHhcC-------CCcEEEecchhhcCCcchHHHHHHHHHHHHHhcC---------CceEEEeccHHHHHhhCCeE---
Confidence 9999997 6999999999999999999999999999988764 69999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
|+|++|+|+.+-.-++
T Consensus 220 ---------------------------ImLh~G~IvlDv~g~~ 235 (263)
T COG1101 220 ---------------------------IMLHSGKIVLDVTGEE 235 (263)
T ss_pred ---------------------------EEEeCCeEEEEccccc
Confidence 9999999998754433
No 342
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-40 Score=379.91 Aligned_cols=247 Identities=28% Similarity=0.392 Sum_probs=189.9
Q ss_pred hhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEE
Q 016804 19 VSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVY 98 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 98 (382)
+..++..+.... .....+..+.+|+...+..|+.....+ . +.......|+++|++
T Consensus 567 l~~pl~~l~~~~-----~~~~~a~~s~~Ri~~~L~~~~~~~~~~--------~------------~~~~~~~~I~~~~vs 621 (1495)
T PLN03232 567 LRSPLNMLPNLL-----SQVVNANVSLQRIEELLLSEERILAQN--------P------------PLQPGAPAISIKNGY 621 (1495)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCcccccccc--------C------------CcCCCCCcEEEEeeE
Confidence 344454444443 566778889999999887764211000 0 000111249999999
Q ss_pred EEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecC
Q 016804 99 KSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 99 ~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
|+|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|.+.. + +.+|+||+|+
T Consensus 622 F~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~----~----------~~~Iayv~Q~ 687 (1495)
T PLN03232 622 FSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV----I----------RGSVAYVPQV 687 (1495)
T ss_pred EEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE----e----------cCcEEEEcCc
Confidence 99964 57999999999999999999999999999999999999999987631 1 1259999999
Q ss_pred CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcC
Q 016804 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~ 244 (382)
|.+|+ .||+|||.|+.. .+ ++++.++++.++|.+..+..| ..||||||||++||||+.+
T Consensus 688 p~Lf~-gTIreNI~fg~~----~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~- 757 (1495)
T PLN03232 688 SWIFN-ATVRENILFGSD----FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS- 757 (1495)
T ss_pred ccccc-ccHHHHhhcCCc----cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc-
Confidence 99997 599999998631 23 234666778888765555444 4799999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDL-IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~l-L~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|+|+|||||||+||+.+.+.+++. ++.+. ++ +|+|+|||+++.+. .||+|
T Consensus 758 ------~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~----------kT~IlvTH~~~~l~-~aD~I---------- 809 (1495)
T PLN03232 758 ------NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KG----------KTRVLVTNQLHFLP-LMDRI---------- 809 (1495)
T ss_pred ------CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cC----------CEEEEEECChhhHH-hCCEE----------
Confidence 5999999999999999999887654 55443 33 59999999998865 47766
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+|+++|+.+++..
T Consensus 810 --------------------i~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 810 --------------------ILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred --------------------EEEeCCEEEEecCHHHHHh
Confidence 9999999999997777653
No 343
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.3e-40 Score=301.67 Aligned_cols=139 Identities=32% Similarity=0.481 Sum_probs=128.6
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEec
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q 174 (382)
.||+|+|+++.+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT--------------PVYKPQ 68 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE--------------EEEEcc
Confidence 5899999999999985 9999999999999999999999999999999999999999852 789998
Q ss_pred CCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcE
Q 016804 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254 (382)
Q Consensus 175 ~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~i 254 (382)
++. ||||||||++|||||+. +|++
T Consensus 69 ~~~-------------------------------------------------LSgGq~qrv~laral~~-------~p~l 92 (177)
T cd03222 69 YID-------------------------------------------------LSGGELQRVAIAAALLR-------NATF 92 (177)
T ss_pred cCC-------------------------------------------------CCHHHHHHHHHHHHHhc-------CCCE
Confidence 643 99999999999999997 6999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 255 LLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+||||||++||+.++..+.+.|++++++++ .|+|++||+++++.++||++
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~---------~tiiivsH~~~~~~~~~d~i 142 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGK---------KTALVVEHDLAVLDYLSDRI 142 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCC---------CEEEEEECCHHHHHHhCCEE
Confidence 999999999999999999999999977642 49999999999999999988
No 344
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-39 Score=304.45 Aligned_cols=223 Identities=27% Similarity=0.438 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.+|+++||+.+..++ ++|++|||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|+++..+. ..++++
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~-~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS-PDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC-HhHHHh
Confidence 479999999999885 9999999999999999999999999999999999995 789999999999998874 444566
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCC--HHHHHHHHHHHHHHcCCcc-cccCCCC-CCChHHHHHHHHHHHHh
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMR--DEQISELVKENLAAVGLKG-VEDRLPS-ELSGGMKKRVALARSII 242 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~--~~~~~~~v~~~L~~~gL~~-~~~~~~~-~LSGGqrQRVaIArAL~ 242 (382)
..|.+-||.|.=+|..|+.+.+.......++.. ..+..+++++.++.+++.+ +++|.+. .+|||||+|..|+.+++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 679999999999999999999988764332221 2456778899999999985 8888885 69999999999999998
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++.|||||-||||..+-+.+.+.+++++.++ .++++|||.-..+..+-
T Consensus 161 l-------ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~----------~~~liITHy~rll~~i~------------ 211 (251)
T COG0396 161 L-------EPKLAILDEPDSGLDIDALKIVAEGINALREEG----------RGVLIITHYQRLLDYIK------------ 211 (251)
T ss_pred c-------CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCC----------CeEEEEecHHHHHhhcC------------
Confidence 5 799999999999999999999999999999886 59999999865544331
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
-|++.+|.+|+|+..|.+ ++
T Consensus 212 -----------------pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 212 -----------------PDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred -----------------CCEEEEEECCEEEecCCH-HH
Confidence 156699999999999987 54
No 345
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=8.6e-40 Score=373.77 Aligned_cols=218 Identities=26% Similarity=0.419 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEeC-------------CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEE
Q 016804 90 VLIDCRNVYKSFG-------------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRK 154 (382)
Q Consensus 90 ~~I~~~nvs~~yg-------------~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~ 154 (382)
..+.++||++... .+++|+|||+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 3599999999873 24799999999999999999999999999999999999874 78999999987
Q ss_pred CCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcccccCCC-----CCC
Q 016804 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLP-----SEL 227 (382)
Q Consensus 155 i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----~~L 227 (382)
.. ... .++.+|||+|++.+++.+||+||+.|....+ ...+.++..+.++++++.+||.+..++.+ ..|
T Consensus 946 ~~----~~~-~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~L 1020 (1470)
T PLN03140 946 KK----QET-FARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020 (1470)
T ss_pred CC----hHH-hhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCc
Confidence 42 111 1235999999999999999999999875322 12344455667899999999998888886 589
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HH
Q 016804 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TI 306 (382)
Q Consensus 228 SGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~ 306 (382)
||||||||+||++|+. +|+||+|||||+|||+.++..+++.|++++++| .|||+++|+++ .+
T Consensus 1021 SgGerkRvsIa~aL~~-------~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g----------~tVI~t~Hq~~~~i 1083 (1470)
T PLN03140 1021 STEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG----------RTVVCTIHQPSIDI 1083 (1470)
T ss_pred CHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCCCHHH
Confidence 9999999999999997 699999999999999999999999999998876 59999999998 57
Q ss_pred HHhhchhccccccccchheehhccCCCCcccccccEEEEEeC-CeEEEEecccc
Q 016804 307 RRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYE-GKIVWQGMTHE 359 (382)
Q Consensus 307 ~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~-G~i~~~g~~~~ 359 (382)
.+.+|++ ++|++ |+++..|++.+
T Consensus 1084 ~~~~D~v------------------------------llL~~gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1084 FEAFDEL------------------------------LLMKRGGQVIYSGPLGR 1107 (1470)
T ss_pred HHhCCEE------------------------------EEEcCCCEEEEECCccc
Confidence 7888877 99986 89999997643
No 346
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.7e-39 Score=372.44 Aligned_cols=238 Identities=24% Similarity=0.332 Sum_probs=186.1
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC--eeeeEeeeEE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE--KHILRGVSFK 113 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~ 113 (382)
.....+..+.+|+...+..+..+..... . . .. .+ .....|+++|++++|++ +++|+|+||+
T Consensus 598 ~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-------~---~----~~--~~-~~~~~i~~~~~~~~~~~~~~~~l~~isl~ 660 (1522)
T TIGR00957 598 SSIVQASVSLKRLRIFLSHEELEPDSIE-------R---R----TI--KP-GEGNSITVHNATFTWARDLPPTLNGITFS 660 (1522)
T ss_pred HHHHHHHHHHHHHHHHHcCccccccccc-------c---c----cc--CC-CCCCcEEEEEeEEEcCCCCCceeeeeEEE
Confidence 4566778889999998877643211000 0 0 00 00 11125999999999974 5799999999
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~ 193 (382)
|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|++.+|+ .||+|||.++..
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~i~yv~Q~~~l~~-~Ti~eNI~~g~~ 724 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------------SVAYVPQQAWIQN-DSLRENILFGKA 724 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---------------EEEEEcCCccccC-CcHHHHhhcCCc
Confidence 999999999999999999999999999999999999986 3899999999986 699999998632
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCc-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 194 ENSKMRDEQISELVKENLAAVGLK-----------GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 194 ~~~~~~~~~~~~~v~~~L~~~gL~-----------~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
.+++.. +++++.+++. ......+.+||||||||++|||||+. +|+++||||||+
T Consensus 725 ----~~~~~~----~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~-------~~~illLDEp~s 789 (1522)
T TIGR00957 725 ----LNEKYY----QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS-------NADIYLFDDPLS 789 (1522)
T ss_pred ----cCHHHH----HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEcCCcc
Confidence 223222 2233333322 23456678999999999999999997 699999999999
Q ss_pred CCCHHHHHHHHHHHHHHH--HcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccc
Q 016804 263 GLDPIASTVVEDLIRSVH--KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFI 340 (382)
Q Consensus 263 gLD~~~~~~l~~lL~~l~--~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (382)
+||+.+.+.+++.+.+.. .++ +|+|+|||+++.+.. ||+|
T Consensus 790 aLD~~~~~~i~~~l~~~~~~~~~----------~tvIlvTH~~~~l~~-~D~i--------------------------- 831 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKN----------KTRILVTHGISYLPQ-VDVI--------------------------- 831 (1522)
T ss_pred ccCHHHHHHHHHHHhhhhhhhcC----------CEEEEEeCChhhhhh-CCEE---------------------------
Confidence 999999999999987542 223 599999999999875 7776
Q ss_pred cEEEEEeCCeEEEEeccccccc
Q 016804 341 YRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 341 ~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+|+++|+.+++..
T Consensus 832 ---i~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 832 ---IVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred ---EEecCCeEEeeCCHHHHHh
Confidence 9999999999998777653
No 347
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-40 Score=330.00 Aligned_cols=213 Identities=32% Similarity=0.510 Sum_probs=182.0
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+.++||+|.|. .+++|+++||+++.|+.+|++||||+||||++++|.+++++++|.|.+||+++....... .++-||
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~s--lR~aIg 340 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS--LRRAIG 340 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHH--HHHHhC
Confidence 88999999995 578999999999999999999999999999999999999999999999999987643222 233599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHH
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALAR 239 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIAr 239 (382)
+|||+..||.+ |++.|+.++. +....+++..+++.+.+.++....| -.|||||||||+|||
T Consensus 341 ~VPQDtvLFND-ti~yni~ygr-------~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar 412 (497)
T COG5265 341 IVPQDTVLFND-TIAYNIKYGR-------PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412 (497)
T ss_pred cCcccceehhh-hHHHHHhccC-------ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHH
Confidence 99999999975 9999999853 1222344566777777777766666 379999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
++++ +|+||+|||.||+||..++++++..|+++.+. .|.++|.|+++++...
T Consensus 413 ~ilk-------~p~il~~deatsaldt~te~~iq~~l~~~~~~-----------rttlviahrlsti~~a---------- 464 (497)
T COG5265 413 TILK-------NPPILILDEATSALDTHTEQAIQAALREVSAG-----------RTTLVIAHRLSTIIDA---------- 464 (497)
T ss_pred HHhc-------CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCC-----------CeEEEEeehhhhccCC----------
Confidence 9998 59999999999999999999999999999753 4899999999999874
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
|.|+||++|+|++.|+..+++..
T Consensus 465 ---------------------deiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 465 ---------------------DEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred ---------------------ceEEEeeCCEEEecCcHHHHHHc
Confidence 45599999999999965556544
No 348
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.5e-39 Score=302.15 Aligned_cols=195 Identities=32% Similarity=0.453 Sum_probs=175.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEec-CCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ-SAALFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q-~~~l~~~l 182 (382)
..+|+||||++++||.+||||+||||||||||+|+|.++||+|+|.++|+- +++.. ...+-|.+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v---------------~~li~lg~Gf~pel 104 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV---------------APLIELGAGFDPEL 104 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE---------------ehhhhcccCCCccc
Confidence 469999999999999999999999999999999999999999999999963 11111 12234569
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
|.+||+.+... ..++..+++++.++++.+..+|.++.++++.++|-||+-|+++|-|... +|+|||+||-.+
T Consensus 105 TGreNi~l~~~-~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~-------~pdILllDEvla 176 (249)
T COG1134 105 TGRENIYLRGL-ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHV-------EPDILLLDEVLA 176 (249)
T ss_pred chHHHHHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhc-------CCCEEEEehhhh
Confidence 99999988653 3457889999999999999999999999999999999999999999975 699999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccE
Q 016804 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYR 342 (382)
Q Consensus 263 gLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (382)
..|+.-++.-.+.+.++.+++ .|+|+||||++.++++|||+
T Consensus 177 vGD~~F~~K~~~rl~e~~~~~----------~tiv~VSHd~~~I~~~Cd~~----------------------------- 217 (249)
T COG1134 177 VGDAAFQEKCLERLNELVEKN----------KTIVLVSHDLGAIKQYCDRA----------------------------- 217 (249)
T ss_pred cCCHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHHHhcCee-----------------------------
Confidence 999999999999999997775 49999999999999999988
Q ss_pred EEEEeCCeEEEEecccccc
Q 016804 343 LIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 343 ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+|...|+++++.
T Consensus 218 -i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 218 -IWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred -EEEeCCEEEEcCCHHHHH
Confidence 999999999999998875
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.8e-40 Score=347.48 Aligned_cols=192 Identities=29% Similarity=0.433 Sum_probs=159.9
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEECCCCCChh
Q 016804 95 RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDE 162 (382)
Q Consensus 95 ~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~-----------i~G~~i~~~~~~~ 162 (382)
++++++||.+ .+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|+++..+....
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 4499999864 6999999 8999999999999999999999999999999999998 8998764321000
Q ss_pred hhccceEEEEecC----CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQS----AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~----~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA 238 (382)
...+.++++.+|. +.+|. .||.||+... +..+.+.++++.++|....++.+.+|||||||||+||
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia 224 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV----------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIA 224 (590)
T ss_pred hccCcceeecccchhhhhhhhc-chHHHHHHhh----------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 0011235555554 44444 3999998641 1234578899999999889999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
+||+. +|++|||||||++||+..+..+.+.|+++.+ + .|+|+||||++++..+|||++++
T Consensus 225 ~al~~-------~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g----------~tvIivsHd~~~l~~~~D~v~vl 284 (590)
T PRK13409 225 AALLR-------DADFYFFDEPTSYLDIRQRLNVARLIRELAE-G----------KYVLVVEHDLAVLDYLADNVHIA 284 (590)
T ss_pred HHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-C----------CEEEEEeCCHHHHHHhCCEEEEE
Confidence 99997 6999999999999999999999999999987 6 59999999999999999998444
No 350
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-39 Score=282.87 Aligned_cols=149 Identities=44% Similarity=0.739 Sum_probs=135.2
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.... ... ...+++|+|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-~~~-~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-LEE-LRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC-HHH-HHhceEEEe
Confidence 689999998889999999999999999999999999999999999999999999999999865321 111 123699999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
| ||+||+||++|||||+. +|+
T Consensus 80 q----------------------------------------------------lS~G~~~r~~l~~~l~~-------~~~ 100 (157)
T cd00267 80 Q----------------------------------------------------LSGGQRQRVALARALLL-------NPD 100 (157)
T ss_pred e----------------------------------------------------CCHHHHHHHHHHHHHhc-------CCC
Confidence 9 99999999999999997 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+++|||||++||+.++..+.+.|+++.+++ .|+|++||+++++..+||++
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~~~~d~i 150 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEG----------RTVIIVTHDPELAELAADRV 150 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999999999999997764 49999999999999999987
No 351
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.8e-40 Score=311.85 Aligned_cols=206 Identities=30% Similarity=0.515 Sum_probs=175.9
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe-cCCCCCCCCC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF-QSAALFDSLT 183 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~-Q~~~l~~~lT 183 (382)
.+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.++|.+... ..+.. -+++++|+ |...++..+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~--~~~~~-~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR--RREEY-LRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch--hHHHH-HHHHHHHhhhhheeeeech
Confidence 48999999999999999999999999999999999999999999999987532 11111 12588876 4455655566
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag 263 (382)
+.|-+..... ....+.++..++...+-+.++|+++++.+++.||-|||.|+.||.||++ +|+||+|||||-|
T Consensus 115 ~~ds~~v~~~-Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh-------~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKL-IYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLH-------PPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHH-HHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcC-------CCcEEEecCCccC
Confidence 6666654322 2236778889999999999999999999999999999999999999997 6999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEE
Q 016804 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343 (382)
Q Consensus 264 LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 343 (382)
||..++..+.+.+++.+++.. +||+++||+++.+..+||||
T Consensus 187 LDV~aq~~ir~Flke~n~~~~---------aTVllTTH~~~di~~lc~rv------------------------------ 227 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQ---------ATVLLTTHIFDDIATLCDRV------------------------------ 227 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhC---------ceEEEEecchhhHHHhhhhe------------------------------
Confidence 999999999999999987642 69999999999999999998
Q ss_pred EEEeCCeEEEEeccccc
Q 016804 344 IFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 344 i~l~~G~i~~~g~~~~~ 360 (382)
+.|+.|+++..|+..++
T Consensus 228 ~~I~~Gqlv~dg~l~~l 244 (325)
T COG4586 228 LLIDQGQLVFDGTLAQL 244 (325)
T ss_pred EEeeCCcEeecccHHHH
Confidence 99999999998876654
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=5.6e-39 Score=334.84 Aligned_cols=208 Identities=34% Similarity=0.532 Sum_probs=177.9
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+|+++|++++||++++|+++||+|.+|+.+||||+||||||||||+|+|...|++|+|...+. .+|
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-------------~~v 68 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-------------LRV 68 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-------------ceE
Confidence 4699999999999999999999999999999999999999999999999999999999998752 269
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCC-----------------------------CHHHHHHHHHHHHHHcCCcccc
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKM-----------------------------RDEQISELVKENLAAVGLKGVE 220 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~-----------------------------~~~~~~~~v~~~L~~~gL~~~~ 220 (382)
||+.|++.+.+..||.+.+..+....... ..-..+.++..++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999999889999887654211000 001123456778888899877
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 016804 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (382)
Q Consensus 221 ~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivT 300 (382)
+++.++||||||.||+||+||+. +|++|||||||++||..+...+.+.|.++ .| |+|+||
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~-------~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-----------tviiVS 207 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLE-------EPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-----------TVIVVS 207 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-----------cEEEEe
Confidence 99999999999999999999997 69999999999999999999999999865 33 899999
Q ss_pred cCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 301 HQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 301 Hdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
||-+++.++|++| +.++.|++. +.|.-+.+.
T Consensus 208 HDR~FLd~V~t~I------------------------------~~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 208 HDRYFLDNVATHI------------------------------LELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred CCHHHHHHHhhhe------------------------------EEecCCceeEecCCHHHHH
Confidence 9999999999988 999999874 556555554
No 353
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9e-39 Score=365.20 Aligned_cols=208 Identities=23% Similarity=0.290 Sum_probs=175.6
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL----APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~----~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
.+++|+|||+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++.... ...+..++||+|+..+
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~---~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK---KHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH---hhcCceeEEecccccc
Confidence 467999999999999999999999999999999999996 579999999999864211 1123359999999999
Q ss_pred CCCCCHHHHHHhhHhhcC------CCCHHHHHHH-HHHHHHHcCCcccccCC-----CCCCChHHHHHHHHHHHHhcCCC
Q 016804 179 FDSLTVRENVGFLLYENS------KMRDEQISEL-VKENLAAVGLKGVEDRL-----PSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~------~~~~~~~~~~-v~~~L~~~gL~~~~~~~-----~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
++.+||+||+.|....+. ...+++..++ ++++++.+||++..+++ ++.|||||||||+||+||+.
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--- 226 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--- 226 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh---
Confidence 999999999999764321 1233333333 46689999998776654 57899999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCH-HHHHHhhchhccccccccchh
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH-STIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl-~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+|++|||||+|||+.++..+.+.|++++++ | .|+|+++|+. +++.+++|++
T Consensus 227 ----~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g----------~tvii~~Hq~~~~i~~l~D~v----------- 281 (1394)
T TIGR00956 227 ----GAKIQCWDNATRGLDSATALEFIRALKTSANILD----------TTPLVAIYQCSQDAYELFDKV----------- 281 (1394)
T ss_pred ----CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCCCHHHHHhhceE-----------
Confidence 69999999999999999999999999999875 5 5999999996 7888999888
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+++++
T Consensus 282 -------------------~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 282 -------------------IVLYEGYQIYFGPADKA 298 (1394)
T ss_pred -------------------EEEeCCeEEEECCHHHH
Confidence 99999999999988764
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.5e-38 Score=360.91 Aligned_cols=197 Identities=25% Similarity=0.441 Sum_probs=161.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
++++|+++. .+++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| +|+|
T Consensus 429 ~~~~~~s~~--~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---------------~iay 491 (1490)
T TIGR01271 429 LFFSNFSLY--VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------------RISF 491 (1490)
T ss_pred ccccccccc--cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------------EEEE
Confidence 556666654 35799999999999999999999999999999999999999999999987 3899
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-----------cccCCCCCCChHHHHHHHHHHH
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----------VEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-----------~~~~~~~~LSGGqrQRVaIArA 240 (382)
++|++.+|+. ||+|||.|+.. .+.+. ..++++.++|.+ .....+.+|||||||||+||||
T Consensus 492 v~Q~~~l~~~-Ti~eNI~~g~~----~~~~~----~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARA 562 (1490)
T TIGR01271 492 SPQTSWIMPG-TIKDNIIFGLS----YDEYR----YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARA 562 (1490)
T ss_pred EeCCCccCCc-cHHHHHHhccc----cchHH----HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHH
Confidence 9999999985 99999998642 12211 222233333321 2345578999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL-IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~l-L~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
|+. +|+++||||||++||+..+..+++. +.++.+ + +|+|+|||+++.+.. ||||
T Consensus 563 l~~-------~~~illLDep~saLD~~~~~~i~~~~l~~~~~-~----------~tvilvtH~~~~~~~-ad~i------ 617 (1490)
T TIGR01271 563 VYK-------DADLYLLDSPFTHLDVVTEKEIFESCLCKLMS-N----------KTRILVTSKLEHLKK-ADKI------ 617 (1490)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-C----------CeEEEEeCChHHHHh-CCEE------
Confidence 997 5999999999999999999999984 666643 4 599999999999865 8877
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|+|++.|+.+++...
T Consensus 618 ------------------------i~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 618 ------------------------LLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred ------------------------EEEECCEEEEEcCHHHHHhc
Confidence 99999999999988877644
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.7e-39 Score=281.68 Aligned_cols=194 Identities=34% Similarity=0.522 Sum_probs=169.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
++.++||+.+.++...|.++||+|.+||++.|+||||||||||+.-+.|.+.++ +|+++++++++..+.. .++
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa----~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA----AQR 77 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch----hhh
Confidence 578999999999999999999999999999999999999999999999999985 8999999999865422 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+||++||++.|||+++|.+|+.|.+... ..-+..++.+..+|++.||.+..++.|.+||||||-||++-|+|+.
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~--~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla---- 151 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPAT--LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA---- 151 (213)
T ss_pred heeeeecccccccccccccceEEecCcc--cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh----
Confidence 7999999999999999999999976322 2223445667889999999999999999999999999999999996
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~-l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+|+.++||||+|.||...+.++.+..-. +...| ...|+||||+..+.
T Consensus 152 ---~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ag----------iPtv~VTHD~~Dvp 199 (213)
T COG4136 152 ---QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG----------IPTVQVTHDLQDVP 199 (213)
T ss_pred ---CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcC----------CCeEEEecccccCC
Confidence 7999999999999999999999987554 44445 57899999998876
No 356
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.1e-38 Score=286.59 Aligned_cols=149 Identities=25% Similarity=0.316 Sum_probs=128.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
.+++|+|+||+|++|++++|+||||||||||||+|. +++|+|.++|... . . .+.+++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~----~--~~~~~~~~~q-------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-K----F--SRNKLIFIDQ-------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-c----c--ccccEEEEhH--------
Confidence 367999999999999999999999999999999996 3799999987631 1 1 1224788887
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC--CcEEEEeC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVE--PEVLLYDE 259 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~--P~iLLLDE 259 (382)
.++++.++|.. ..++++.+||||||||++|||||+. + |++|||||
T Consensus 68 -------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~-------~~~p~llLlDE 115 (176)
T cd03238 68 -------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFS-------EPPGTLFILDE 115 (176)
T ss_pred -------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhh-------CCCCCEEEEeC
Confidence 23578889876 4789999999999999999999996 7 99999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 260 PtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
||++||+.++..+.+.|+++++.| .|||++||+++++ +.|||+
T Consensus 116 Pt~~LD~~~~~~l~~~l~~~~~~g----------~tvIivSH~~~~~-~~~d~i 158 (176)
T cd03238 116 PSTGLHQQDINQLLEVIKGLIDLG----------NTVILIEHNLDVL-SSADWI 158 (176)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHH-HhCCEE
Confidence 999999999999999999997665 5999999999987 468877
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.4e-38 Score=360.69 Aligned_cols=206 Identities=25% Similarity=0.370 Sum_probs=174.1
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCCChhhhccceEEEEecCCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~ 179 (382)
.+++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .+..++||+|+..++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~~ 251 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV-----PRKTSAYISQNDVHV 251 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc-----ccceeEEecccccCC
Confidence 366999999999999999999999999999999999999998 999999999864321 133699999999999
Q ss_pred CCCCHHHHHHhhHhhcCC---------CCHHHH------------------------HHHHHHHHHHcCCcccc-----c
Q 016804 180 DSLTVRENVGFLLYENSK---------MRDEQI------------------------SELVKENLAAVGLKGVE-----D 221 (382)
Q Consensus 180 ~~lTV~eni~~~~~~~~~---------~~~~~~------------------------~~~v~~~L~~~gL~~~~-----~ 221 (382)
+.+||+||+.|....... ..+++. ...++++++.+||++.. +
T Consensus 252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~ 331 (1470)
T PLN03140 252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD 331 (1470)
T ss_pred CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC
Confidence 999999999997642210 011110 11356789999998654 5
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEc
Q 016804 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVT 300 (382)
Q Consensus 222 ~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivT 300 (382)
+.++.|||||||||+||++|+. +|++|+|||||+|||+.+..++.+.|++++++ | .|+|+++
T Consensus 332 ~~~rglSGGerkRVsia~aL~~-------~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g----------~Tviis~ 394 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVG-------PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTE----------ATVLMSL 394 (1470)
T ss_pred ccccCCCcccceeeeehhhhcC-------CCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcC----------CEEEEEe
Confidence 6778999999999999999997 69999999999999999999999999999764 4 5999999
Q ss_pred cCH-HHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 301 HQH-STIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 301 Hdl-~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
|+. .++.+++|+| ++|++|+++.+|+.+++
T Consensus 395 Hqp~~~i~~lfD~v------------------------------ilL~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 395 LQPAPETFDLFDDI------------------------------ILLSEGQIVYQGPRDHI 425 (1470)
T ss_pred cCCCHHHHHHhheE------------------------------EEeeCceEEEeCCHHHH
Confidence 986 6888899887 99999999999987764
No 358
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.4e-38 Score=339.33 Aligned_cols=221 Identities=24% Similarity=0.308 Sum_probs=167.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEECCEECCCCC-Ch---
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL---APDKGEVYIRGRKRAGLI-SD--- 161 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~---~p~sG~I~i~G~~i~~~~-~~--- 161 (382)
..+|+++|++|+|+++.+|+|+||+|.+|+++|||||||||||||||+|+|.. .|++|+|.+.++++.... ..
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 45799999999999888999999999999999999999999999999999964 588999987665432111 00
Q ss_pred -----hhh---ccceEEEEecCCCCCCCCCHHHHHHhh-----------------HhhcCCCCHHHHHHHHHHHHHHcCC
Q 016804 162 -----EEI---SGLRIGLVFQSAALFDSLTVRENVGFL-----------------LYENSKMRDEQISELVKENLAAVGL 216 (382)
Q Consensus 162 -----~~~---~~~~Ig~V~Q~~~l~~~lTV~eni~~~-----------------~~~~~~~~~~~~~~~v~~~L~~~gL 216 (382)
.+. .+..++|++|++.+... ++.+|.... +...........++++.++|+.+|+
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 000 01136788887654221 222221110 0000001111345567788889999
Q ss_pred c-ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE
Q 016804 217 K-GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295 (382)
Q Consensus 217 ~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~t 295 (382)
. +..++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.+.|+++ + .|
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~----------~t 393 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFI-------EPDLLLLDEPTNHLDLHAVLWLETYLLKW---P----------KT 393 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHc---C----------CE
Confidence 6 56788999999999999999999997 69999999999999999999999999886 3 39
Q ss_pred EEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEE-EEeccccc
Q 016804 296 YVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEF 360 (382)
Q Consensus 296 iIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~ 360 (382)
+|+||||++++..+||++ ++|++|++. +.|+..++
T Consensus 394 viivsHd~~~l~~~~d~i------------------------------~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 394 FIVVSHAREFLNTVVTDI------------------------------LHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCHHHHHHhCCEE------------------------------EEEECCEEEEeCCCHHHH
Confidence 999999999999999988 999999996 56655544
No 359
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1e-37 Score=343.59 Aligned_cols=222 Identities=29% Similarity=0.484 Sum_probs=202.0
Q ss_pred ceEEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~-iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
..+.++|++|.|+.+. +++++||.|++||+.|+.|||||||||++|+|.|..+|++|+++++|.++.... +.+..+..
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~-~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVST-DFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCcccccc-chhhhhhh
Confidence 4688999999999877 999999999999999999999999999999999999999999999999876432 22223346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
+||+||...+++.+|.+|.+.+..+ .++..+.++.+.++.+++.++|.+..+++.+.+|||+|+|+++|.||+.
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~ar-lrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig----- 715 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYAR-LRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG----- 715 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHH-HcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc-----
Confidence 9999999999999999999998764 4567777888889999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++++|||||+|+||.+++.+++++.+++++| +.+|++||.|++++.+|||+
T Consensus 716 --~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g----------~aiiLTSHsMeE~EaLCtR~--------------- 768 (885)
T KOG0059|consen 716 --DPSVILLDEPSTGLDPKARRHLWDIIARLRKNG----------KAIILTSHSMEEAEALCTRT--------------- 768 (885)
T ss_pred --CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHHhhhh---------------
Confidence 699999999999999999999999999999876 38999999999999999999
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
..|.+|++..-|++.++
T Consensus 769 ---------------aImv~G~l~ciGs~q~L 785 (885)
T KOG0059|consen 769 ---------------AIMVIGQLRCIGSPQEL 785 (885)
T ss_pred ---------------heeecCeeEEecChHHH
Confidence 88999999999988765
No 360
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-37 Score=345.87 Aligned_cols=220 Identities=28% Similarity=0.512 Sum_probs=188.3
Q ss_pred CCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.++ |+++|++.+|.. ..+|+||||+|++||.+||||+.|||||||+++|-++..|.+|+|.|||.|+.... -.++
T Consensus 1136 ~G~--I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ig-L~dL 1212 (1381)
T KOG0054|consen 1136 KGE--IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIG-LHDL 1212 (1381)
T ss_pred CCe--EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccccc-HHHH
Confidence 444 999999999965 47999999999999999999999999999999999999999999999999998753 3333
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (382)
|.+++.+||+|.||.+ |++.|+.= . ...+ ++++-++|++++|.+...+.| .++|-||||
T Consensus 1213 -RsrlsIIPQdPvLFsG-TvR~NLDP-f---~e~s----D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQ 1282 (1381)
T KOG0054|consen 1213 -RSRLSIIPQDPVLFSG-TVRFNLDP-F---DEYS----DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQ 1282 (1381)
T ss_pred -HhcCeeeCCCCceecC-ccccccCc-c---cccC----HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHH
Confidence 3379999999999985 99999942 1 1122 344677888888876665555 689999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
.++|||||++ +++||+|||+||++|+++-..+++.|++--++ .|||.|.|+++++.+. |||
T Consensus 1283 LlCLARALLr-------~skILvLDEATAsVD~~TD~lIQ~tIR~~F~d-----------cTVltIAHRl~TVmd~-DrV 1343 (1381)
T KOG0054|consen 1283 LLCLARALLR-------KSKILVLDEATASVDPETDALIQKTIREEFKD-----------CTVLTIAHRLNTVMDS-DRV 1343 (1381)
T ss_pred HHHHHHHHhc-------cCCEEEEecccccCChHHHHHHHHHHHHHhcC-----------CeEEEEeeccchhhhc-CeE
Confidence 9999999997 69999999999999999999999999997665 5999999999999984 555
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHH
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIV 368 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~ 368 (382)
+||++|+|+|.|+|.++++..+...
T Consensus 1344 ------------------------------lVld~G~v~EfdsP~~Ll~~~~S~f 1368 (1381)
T KOG0054|consen 1344 ------------------------------LVLDAGRVVEFDSPAELLSDKDSLF 1368 (1381)
T ss_pred ------------------------------EEeeCCeEeecCChHHHHhCCcchH
Confidence 9999999999999999886554443
No 361
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.6e-37 Score=324.45 Aligned_cols=218 Identities=37% Similarity=0.573 Sum_probs=190.3
Q ss_pred ceEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CccEEEECCEECCCCCCh
Q 016804 90 VLIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP---DKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 90 ~~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p---~sG~I~i~G~~i~~~~~~ 161 (382)
..++++|++....+ +++|+|||.++++||+.||+|||||||||||++|+|.... .+|+|++||+... ..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~---~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD---SR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc---hh
Confidence 34788898888743 6799999999999999999999999999999999999975 6899999996532 11
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC--CCCHHHHHHHHHHHHHHcCCcccccCCCC-----CCChHHHHH
Q 016804 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS-----ELSGGMKKR 234 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~L~~~gL~~~~~~~~~-----~LSGGqrQR 234 (382)
..+...|||.|+..+++.+||+|++.|....+- ..+.++.+++|+++++.+||....|..++ .+|||||||
T Consensus 101 --~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkR 178 (613)
T KOG0061|consen 101 --SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKR 178 (613)
T ss_pred --hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhH
Confidence 123369999999999999999999999764432 24678889999999999999988888885 599999999
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH-HHHHHhhchh
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRL 313 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl-~~~~~~aDrv 313 (382)
|+||.-|+. +|.||+|||||+|||..+..++.+.|++++++| +|||++-|+. ..+.++-|++
T Consensus 179 vsia~Ell~-------~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~g----------rtVi~tIHQPss~lf~lFD~l 241 (613)
T KOG0061|consen 179 VSIALELLT-------DPSILFLDEPTSGLDSFSALQVVQLLKRLARSG----------RTVICTIHQPSSELFELFDKL 241 (613)
T ss_pred HHHHHHHHc-------CCCEEEecCCCCCcchhhHHHHHHHHHHHHhCC----------CEEEEEEeCCcHHHHHHHhHh
Confidence 999999997 599999999999999999999999999999987 5999999987 5667777777
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|.+|+++..|++.+
T Consensus 242 ------------------------------~lLs~G~~vy~G~~~~ 257 (613)
T KOG0061|consen 242 ------------------------------LLLSEGEVVYSGSPRE 257 (613)
T ss_pred ------------------------------hhhcCCcEEEecCHHH
Confidence 9999999999998865
No 362
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-36 Score=349.69 Aligned_cols=194 Identities=28% Similarity=0.444 Sum_probs=157.4
Q ss_pred EeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCC
Q 016804 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (382)
Q Consensus 100 ~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~ 179 (382)
.++++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ +|||++|++.+|
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~---------------~i~yv~Q~~~l~ 733 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER---------------SIAYVPQQAWIM 733 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---------------eEEEEeCCCccC
Confidence 34556799999999999999999999999999999999999999999998631 599999999998
Q ss_pred CCCCHHHHHHhhHhhcCCCCHHHHHH-----HHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 180 DSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
+ .||+|||.++.. .+.+...+ .+.+.++.+ |+....++++.+|||||||||+|||||+. +|
T Consensus 734 ~-~Tv~enI~~~~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~-------~p 801 (1560)
T PTZ00243 734 N-ATVRGNILFFDE----EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA-------NR 801 (1560)
T ss_pred C-CcHHHHHHcCCh----hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc-------CC
Confidence 6 699999988531 11111111 122334444 66666678899999999999999999997 69
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 253 EVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 253 ~iLLLDEPtagLD~~~~~~l~~lL-~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
+++||||||++||+.....+++.+ .... ++ +|+|++||+++.+. .||+|
T Consensus 802 ~illLDEP~saLD~~~~~~i~~~~~~~~~-~~----------~TvIlvTH~~~~~~-~ad~i------------------ 851 (1560)
T PTZ00243 802 DVYLLDDPLSALDAHVGERVVEECFLGAL-AG----------KTRVLATHQVHVVP-RADYV------------------ 851 (1560)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHhh-CC----------CEEEEEeCCHHHHH-hCCEE------------------
Confidence 999999999999999988887643 3322 34 59999999999985 57777
Q ss_pred CCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++++|+.+++..
T Consensus 852 ------------i~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 852 ------------VALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred ------------EEEECCEEEEecCHHHHHh
Confidence 9999999999998877653
No 363
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-37 Score=279.72 Aligned_cols=192 Identities=32% Similarity=0.494 Sum_probs=166.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+++.+|++...+++.++.++||++.+||++-|.||||||||||||+|+||.+|++|+|+++|..+.... +. ....+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~--~~~~l~ 78 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ES--YHQALL 78 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hh--HHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999998765421 11 112467
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+--.+.+=+.+|++||+.|....+...+ ...+.++++.+||.++.|.++.+||-|||+||||||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~----~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls------- 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGN----AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLS------- 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCc----hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcC-------
Confidence 88888888889999999999765443222 2346789999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~ 306 (382)
.+++.||||||++||......+-.++.+-..+|+ .||.+||+.--+
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GG----------iVllttHq~l~~ 193 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGG----------IVLLTTHQPLPI 193 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCC----------EEEEecCCccCC
Confidence 6999999999999999999999999999877763 799999986444
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.1e-36 Score=284.44 Aligned_cols=198 Identities=29% Similarity=0.355 Sum_probs=140.8
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHH-HHHHcCCCCCccEEEECC-------EECCCCC-Ch-hhhccceEE
Q 016804 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL-KIIAGLLAPDKGEVYIRG-------RKRAGLI-SD-EEISGLRIG 170 (382)
Q Consensus 101 yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLL-klI~Gl~~p~sG~I~i~G-------~~i~~~~-~~-~~~~~~~Ig 170 (382)
..+.++|++|||+|++||++||+||||||||||+ ..|. .+|++.+.. ....... .. ........+
T Consensus 5 ~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 5 GAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred cchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 3456799999999999999999999999999995 4443 234433210 0000000 00 011112345
Q ss_pred EEecCCC--CCCCCCHHH---HHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 171 LVFQSAA--LFDSLTVRE---NVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 171 ~V~Q~~~--l~~~lTV~e---ni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
+..|++. +.+..+|.. ...+.... .......++ .++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~- 154 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLL---FARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGS- 154 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHH---hhhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHh-
Confidence 5555543 344445543 22221100 112222333 56899999986 5899999999999999999999997
Q ss_pred CCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 245 NTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 245 ~~~~a~~P--~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+| ++|||||||++||+..+..+.+.|++++++| .|+|++|||++++ .+|||+
T Consensus 155 ------~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g----------~tii~itH~~~~~-~~~d~i--------- 208 (226)
T cd03270 155 ------GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG----------NTVLVVEHDEDTI-RAADHV--------- 208 (226)
T ss_pred ------CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEEeCHHHH-HhCCEE---------
Confidence 46 6999999999999999999999999997766 5999999999987 488877
Q ss_pred hheehhccCCCCcccccccEEEEE------eCCeEEEEe
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQG 355 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g 355 (382)
++| ++|+|+++|
T Consensus 209 ---------------------~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 209 ---------------------IDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred ---------------------EEeCCCccccCCEEEecC
Confidence 899 999999876
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=309.48 Aligned_cols=187 Identities=31% Similarity=0.510 Sum_probs=164.4
Q ss_pred CCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 87 DGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.+..+++++|+++.|++ +.+++++||.|.+|+.+|||||||+|||||||+|+|...|.+|+|.+.-.
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~------------ 384 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET------------ 384 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc------------
Confidence 45678999999999965 68999999999999999999999999999999999999999999998531
Q ss_pred cceEEEEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 166 GLRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 166 ~~~Ig~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
.+|||..|+. .+++..|+.|++.-.. ... .+..++..|..+++. +...+++..||||||-|+.||+.++.
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~---~~~----~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGF---PDG----DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhC---ccc----cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 2699999997 4567789999986532 111 155688999999997 46688999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|.+|||||||++||..+...+.+.|.++ +| |+|+||||..++.++|+++
T Consensus 457 -------~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~G-----------tvl~VSHDr~Fl~~va~~i 506 (530)
T COG0488 457 -------PPNLLLLDEPTNHLDIESLEALEEALLDF--EG-----------TVLLVSHDRYFLDRVATRI 506 (530)
T ss_pred -------CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CC-----------eEEEEeCCHHHHHhhcceE
Confidence 69999999999999999999999999887 34 9999999999999999988
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-34 Score=322.57 Aligned_cols=237 Identities=28% Similarity=0.416 Sum_probs=193.5
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSF 112 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~---~~iL~~vsl 112 (382)
+....+..+.+|+......+..+...... .+..+.+..++++|.+++.+. .+.|+||||
T Consensus 481 ~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~------------------~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~ 542 (1381)
T KOG0054|consen 481 SQLVQAKVSLKRLKEFLLSEELDPDSVER------------------SPDEAGENAIEIKNGSFSWDSESPEPTLKDINF 542 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcccccc------------------CCCCCCCceEEEeeeeEecCCCCCcccccceeE
Confidence 45566788999999999988654433311 122344556999999999864 348999999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
+|++|+.+||+||-|||||+||.+|+|-++..+|+|.++|. ++||+|.|.+++ .||+|||.|+.
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs---------------iaYv~Q~pWI~n-gTvreNILFG~ 606 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS---------------VAYVPQQPWIQN-GTVRENILFGS 606 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe---------------EEEeccccHhhC-CcHHHhhhcCc
Confidence 99999999999999999999999999999999999999982 899999999997 49999999975
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
. ++ +++.++.++.+.|+...+..| -+||||||||++||||+-+ +++|+|||.|+
T Consensus 607 ~----~d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~-------~adIYLLDDpl 671 (1381)
T KOG0054|consen 607 P----YD----EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ-------DADIYLLDDPL 671 (1381)
T ss_pred c----cc----HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc-------cCCEEEEcCcc
Confidence 2 33 344667788888876666655 5899999999999999998 59999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCccccccc
Q 016804 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIY 341 (382)
Q Consensus 262 agLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (382)
|++|....+.+++-.-...-++ +|+|+|||.++...+ ||
T Consensus 672 SAVDahvg~~if~~ci~~~L~~----------KT~ILVTHql~~L~~-ad------------------------------ 710 (1381)
T KOG0054|consen 672 SAVDAHVGKHIFEECIRGLLRG----------KTVILVTHQLQFLPH-AD------------------------------ 710 (1381)
T ss_pred hhhhHhhhHHHHHHHHHhhhcC----------CEEEEEeCchhhhhh-CC------------------------------
Confidence 9999999888776544322223 599999999888775 55
Q ss_pred EEEEEeCCeEEEEeccccccc
Q 016804 342 RLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 342 ~ii~l~~G~i~~~g~~~~~~~ 362 (382)
+|++|++|+|.+.|+.+|+..
T Consensus 711 ~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 711 QIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred EEEEecCCeEecccCHHHHHh
Confidence 559999999999998888763
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=263.31 Aligned_cols=205 Identities=32% Similarity=0.459 Sum_probs=175.3
Q ss_pred eEEEEeEEEEeC-----C--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE----CCCCC
Q 016804 91 LIDCRNVYKSFG-----E--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK----RAGLI 159 (382)
Q Consensus 91 ~I~~~nvs~~yg-----~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~----i~~~~ 159 (382)
.|.++||+|+|- + -++|+++||+++.||+++|=||||||||||||+|-|-|.||+|+|++.... +....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 488999999992 2 369999999999999999999999999999999999999999999996432 21111
Q ss_pred Chh--hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHH
Q 016804 160 SDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 160 ~~~--~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVa 236 (382)
... ..++..||||.|--...|..+..|-++.++.. .+.+.+..+.++..+|.++++.+ +..-.|.++||||||||.
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 111 12334599999988888888889999888754 45778888889999999999965 556678999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||.++. +-+||||||||++||..++..+.++|++-+..| .++|=|-||-+.=...|||+
T Consensus 163 IaRgfiv-------d~pILLLDEPTasLDa~Nr~vVveli~e~Ka~G----------aAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 163 IARGFIV-------DYPILLLDEPTASLDATNRAVVVELIREAKARG----------AALVGIFHDEEVREAVADRL 222 (235)
T ss_pred hhhhhhc-------cCceEEecCCcccccccchHHHHHHHHHHHhcC----------ceEEEeeccHHHHHHHhhhe
Confidence 9999997 489999999999999999999999999988887 58999999998888899998
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=5.4e-35 Score=251.39 Aligned_cols=133 Identities=50% Similarity=0.774 Sum_probs=115.6
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .....+..++|++|++.+++.+|+.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI--DIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS--HHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999999999999999998652 22223346999999999999999999
Q ss_pred HHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC----CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP----SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~----~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
| ...+++.++++.+++.+..++.+ .+||+|||||++|||||++ +|++||||||||
T Consensus 79 ~--------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~-------~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N--------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLK-------NPKLLLLDEPTN 137 (137)
T ss_dssp H--------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT-------TSSEEEEESTTT
T ss_pred c--------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHc-------CCCEEEEeCCCC
Confidence 9 12344677888888876655555 9999999999999999997 699999999997
No 369
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.2e-35 Score=263.14 Aligned_cols=229 Identities=25% Similarity=0.377 Sum_probs=192.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+++++||..+- =|-.+|.++..||++-+||||||||||||-.++|+. |-+|+|.++|.++..+. ..+..+ +-
T Consensus 2 ~l~qln~v~~~t----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~-~~eLAr-hR 74 (248)
T COG4138 2 ILMQLNDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWS-ATELAR-HR 74 (248)
T ss_pred ceeeeccccccc----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHh-HhHHHH-HH
Confidence 357888887643 478899999999999999999999999999999997 57899999999976553 223332 35
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+.|+..-...|.|+.++.+.. +.++....+.++...+++++.+.|..++|||||.|||-+|-..++-++...
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~q------P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~N 148 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLHQ------PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDAN 148 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhcC------chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCC
Confidence 79998765444589999987632 234555667889999999999999999999999999999999988666666
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
...++||+|||.++||...+..+..+|.+++++| .+|||++||++...+.||++
T Consensus 149 P~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G----------~~vims~HDLNhTLrhA~~~---------------- 202 (248)
T COG4138 149 PAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQG----------LAIVMSSHDLNHTLRHAHRA---------------- 202 (248)
T ss_pred ccceeEEecCCCcchhHHHHHHHHHHHHHHHhCC----------cEEEEeccchhhHHHHHHHH----------------
Confidence 6678999999999999999999999999999998 69999999999999999999
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
|.|+.|++..+|..+|++++ ++..+.+.
T Consensus 203 --------------wLL~rG~l~~~G~~~eVlt~--~vL~q~fg 230 (248)
T COG4138 203 --------------WLLKRGKLLASGRREEVLTP--PVLAQAYG 230 (248)
T ss_pred --------------HHHhcCeEEeecchhhhcCh--HHHHHHhc
Confidence 99999999999999998753 45555544
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.6e-33 Score=268.63 Aligned_cols=202 Identities=24% Similarity=0.320 Sum_probs=154.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-----c-CC----CCCcc-----------EEEECCEECCCCCChh
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-----G-LL----APDKG-----------EVYIRGRKRAGLISDE 162 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~-----G-l~----~p~sG-----------~I~i~G~~i~~~~~~~ 162 (382)
..-|+|||++|+.|.+++|.|+||||||||++.+. . +. .|..+ -|.++..++.......
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999999662 1 11 12211 3666665553321100
Q ss_pred --------h-hc----------c-----ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc
Q 016804 163 --------E-IS----------G-----LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218 (382)
Q Consensus 163 --------~-~~----------~-----~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~ 218 (382)
+ ++ + +.+.|..++...+..+||.|++.|.... . . .+++.++++.+||..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~----~--~-~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI----P--K-IARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh----h--h-HHHHHHHHHHcCCch
Confidence 0 00 0 1255666666666789999999885421 1 1 234677899999987
Q ss_pred -cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE
Q 016804 219 -VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297 (382)
Q Consensus 219 -~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiI 297 (382)
.+++++.+|||||+||++|||+|++++ .+|+++||||||+|||+..+..+.+.|+++.++| .|+|
T Consensus 161 l~l~~~~~~LSgGe~QRl~LAraL~~~~----~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~tvI 226 (261)
T cd03271 161 IKLGQPATTLSGGEAQRIKLAKELSKRS----TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKG----------NTVV 226 (261)
T ss_pred hhhcCccccCCHHHHHHHHHHHHHhcCC----CCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEE
Confidence 579999999999999999999999631 1389999999999999999999999999998776 4999
Q ss_pred EEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecc
Q 016804 298 VVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMT 357 (382)
Q Consensus 298 ivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~ 357 (382)
++||+++.+. .||++ ++| ++|+|+++|++
T Consensus 227 iitH~~~~i~-~aD~i------------------------------i~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 227 VIEHNLDVIK-CADWI------------------------------IDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEeCCHHHHH-hCCEE------------------------------EEecCCcCCCCCEEEEeCCC
Confidence 9999999986 68877 999 89999999853
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=5.1e-33 Score=256.83 Aligned_cols=165 Identities=26% Similarity=0.358 Sum_probs=130.2
Q ss_pred ee-EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---------cEEEECCEECCCCCChhhhccceEEEEecC
Q 016804 106 IL-RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---------GEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 106 iL-~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s---------G~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
-+ ++++|++++| +++|+||||||||||+++|+|+.+|.. |++.++|++... .. ...+|+||||+
T Consensus 11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~v~~vfq~ 84 (197)
T cd03278 11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PA--NFAEVTLTFDN 84 (197)
T ss_pred CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CC--ceEEEEEEEEc
Confidence 35 6789999999 999999999999999999999987653 467777776432 11 12469999999
Q ss_pred CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 016804 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iL 255 (382)
+..+ |.. .. .+++.++++. .+..++.+.+||||||||++|||+|+.. ...+|+++
T Consensus 85 ~~~~----------~~~-----~~----~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~---~~~~~~il 139 (197)
T cd03278 85 SDGR----------YSI-----IS----QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIF---RVRPSPFC 139 (197)
T ss_pred CCCc----------eeE-----Ee----hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHh---ccCCCCEE
Confidence 9876 211 01 2345566666 5567889999999999999999999620 00147999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 256 LLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
||||||++||+..+..+.+.|+++++ + .|||++||+++.+ ++||++
T Consensus 140 llDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiIiitH~~~~~-~~~d~v 185 (197)
T cd03278 140 VLDEVDAALDDANVERFARLLKEFSK-E----------TQFIVITHRKGTM-EAADRL 185 (197)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcc-C----------CEEEEEECCHHHH-hhcceE
Confidence 99999999999999999999999865 3 4899999999986 579988
No 372
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-32 Score=277.72 Aligned_cols=222 Identities=26% Similarity=0.402 Sum_probs=190.2
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.+.+.++++|++..- .++|+||++++||++||.|==|||+|-|+++|.|..++++|+|+++|+++... +..+..+
T Consensus 259 ~~~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~-sp~~Ai~ 333 (500)
T COG1129 259 IGEPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIR-SPRDAIK 333 (500)
T ss_pred CCCcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCC-CHHHHHH
Confidence 356789999998542 68999999999999999999999999999999999999999999999987653 3333334
Q ss_pred ceEEEEecCC---CCCCCCCHHHHHHhhH-hhcC---CCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHH
Q 016804 167 LRIGLVFQSA---ALFDSLTVRENVGFLL-YENS---KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 167 ~~Ig~V~Q~~---~l~~~lTV~eni~~~~-~~~~---~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIA 238 (382)
..|+|||.|- .++..++|.+|+.+.. .... -.+.....+.++++.+.+++. .-.+..+.+||||.||||.||
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 4699999984 5888999999998872 1211 245555567788899999996 456788999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|.|.. +|++|||||||.|+|.-++.+++++|++|+++| ++|||+|-++.++..+||||
T Consensus 414 rwL~~-------~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G----------~ail~iSSElpEll~~~DRI----- 471 (500)
T COG1129 414 RWLAT-------DPKVLILDEPTRGIDVGAKAEIYRLIRELAAEG----------KAILMISSELPELLGLSDRI----- 471 (500)
T ss_pred HHHhc-------CCCEEEECCCCcCcccchHHHHHHHHHHHHHCC----------CEEEEEeCChHHHHhhCCEE-----
Confidence 99986 699999999999999999999999999999998 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
+||++|+|+..-..+++
T Consensus 472 -------------------------lVm~~Gri~~e~~~~~~ 488 (500)
T COG1129 472 -------------------------LVMREGRIVGELDREEA 488 (500)
T ss_pred -------------------------EEEECCEEEEEeccccC
Confidence 99999999986655553
No 373
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.98 E-value=5.3e-33 Score=264.57 Aligned_cols=198 Identities=22% Similarity=0.301 Sum_probs=147.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCE-ECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGR-KRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-sG~I~i~G~-~i~~~~~~~~~~~~~I 169 (382)
|+++|. ++|.+..++.++ ...+++||||||||||||+++|++++.++ .|++++.|. ++............+|
T Consensus 6 ~~~~~f-~~~~~~~~~~~~-----~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISGF-----DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeeccC-----CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 567776 667654433332 25699999999999999999999999987 468888776 3221111111123369
Q ss_pred EEEecCC---------CCCCCCCHHHHHHhhHhhcCCC-CHHHHHHHHHHHHHHcCCc--------------------cc
Q 016804 170 GLVFQSA---------ALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLK--------------------GV 219 (382)
Q Consensus 170 g~V~Q~~---------~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~L~~~gL~--------------------~~ 219 (382)
+++||++ .+.+.+||.+|+.++....... ......+++.++|+.+|+. +.
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~ 159 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGV 159 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHh
Confidence 9999985 3456789998886643211101 1223346788899999996 45
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhc---CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEE
Q 016804 220 EDRLPSELSGGMKKRVALARSIIF---DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY 296 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIArAL~~---~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~ti 296 (382)
.++++.+||+|||||++|||||+. . +|+++||||||++||+..+..+.+.|+++.+ | .|+
T Consensus 160 ~~~~~~~lS~G~~qr~~la~al~~~~~~------~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g----------~~i 222 (251)
T cd03273 160 WKESLTELSGGQRSLVALSLILALLLFK------PAPMYILDEVDAALDLSHTQNIGRMIKTHFK-G----------SQF 222 (251)
T ss_pred hcccccccCHHHHHHHHHHHHHHHhhcc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-C----------CEE
Confidence 568899999999999999999972 1 4899999999999999999999999999854 4 489
Q ss_pred EEEccCHHHHHHhhchh
Q 016804 297 VVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 297 IivTHdl~~~~~~aDrv 313 (382)
|++||+ .++.+.||++
T Consensus 223 i~iSH~-~~~~~~~d~v 238 (251)
T cd03273 223 IVVSLK-EGMFNNANVL 238 (251)
T ss_pred EEEECC-HHHHHhCCEE
Confidence 999999 5555679988
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=6.2e-32 Score=254.69 Aligned_cols=201 Identities=22% Similarity=0.274 Sum_probs=140.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------cCCCCCcc--------E
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA----------------GLLAPDKG--------E 147 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~----------------Gl~~p~sG--------~ 147 (382)
|+++|. |+|++..++++++ |++++|+||||||||||+++|+ +++.+++| +
T Consensus 4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 566665 3688888888887 8899999999999999999998 55666667 6
Q ss_pred EEECCEECCC-CCChhhhccceEEEEecCCCCCC-CCCHHHHHHhhHhhcCCCCHHHHHH--HHHHHHHHcCCcccccCC
Q 016804 148 VYIRGRKRAG-LISDEEISGLRIGLVFQSAALFD-SLTVRENVGFLLYENSKMRDEQISE--LVKENLAAVGLKGVEDRL 223 (382)
Q Consensus 148 I~i~G~~i~~-~~~~~~~~~~~Ig~V~Q~~~l~~-~lTV~eni~~~~~~~~~~~~~~~~~--~v~~~L~~~gL~~~~~~~ 223 (382)
|.+++.+-.. ........++++++++|++.+++ ..|..|...+.. .. +........ ...+..+.+++.+..++.
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~-~~-gl~~~~~~~~~~qg~i~~l~~l~~~~~~~ 155 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLE-SA-GFSRSNPYYIVPQGKINSLTNMKQDEQQE 155 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHH-Hc-CCCCCCCcEEEEcCchHHhhhcccccccc
Confidence 7776532110 00111112335999999988877 357666554432 21 222110000 001233345566667889
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
+.+||||||||++|||||+... ..+|+++||||||++||+.++..+.+.|+++.+ + .++|++||+.
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~---~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~----------~~ii~~~h~~ 221 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQK---CDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-G----------AQFITTTFRP 221 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhc---cCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEecCH
Confidence 9999999999999999996200 014899999999999999999999999999865 4 4788888885
Q ss_pred HHHHHhhchhcc
Q 016804 304 STIRRAVDRLCL 315 (382)
Q Consensus 304 ~~~~~~aDrv~~ 315 (382)
++.++|||+++
T Consensus 222 -~~~~~~d~i~~ 232 (243)
T cd03272 222 -ELLEVADKFYG 232 (243)
T ss_pred -HHHhhCCEEEE
Confidence 56789999844
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.97 E-value=1e-31 Score=250.13 Aligned_cols=194 Identities=23% Similarity=0.261 Sum_probs=136.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEe-CCcEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIR-HGEAVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~-~Ge~vaLiGpNGaGKSTLLklI~G-l~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.|+++|+. +|.+. .+++|+.. +|++++|+||||||||||+++|++ ++-+..+....+. .... .... .....
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~-~~~~-~~~~-~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN-LRSV-FAPG-EDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchh-HHHH-hcCC-CccEE
Confidence 38899998 77554 56667644 589999999999999999999995 4444445444321 1000 0111 11235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC--
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT-- 246 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~-- 246 (382)
|+++||+.... .++..+ .+.+.++..+.+ .++..++.++.++++.+||||||||++|||||+..+.
T Consensus 78 v~~~f~~~~~~--~~~~r~--------~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~ 145 (213)
T cd03279 78 VSFTFQLGGKK--YRVERS--------RGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQ 145 (213)
T ss_pred EEEEEEECCeE--EEEEEe--------cCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhh
Confidence 99999987421 111111 123333332221 3455567788899999999999999999999974100
Q ss_pred -CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 247 -KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 247 -~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+...+|+++||||||++||+..+..+.+.|+++++++ .|+|+|||+++.+..+||++
T Consensus 146 ~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~----------~tii~itH~~~~~~~~~~~i 203 (213)
T cd03279 146 NRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN----------RMVGVISHVEELKERIPQRL 203 (213)
T ss_pred hccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEECchHHHHhhCcEE
Confidence 0002589999999999999999999999999997765 59999999999999999887
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=5.9e-33 Score=259.22 Aligned_cols=185 Identities=19% Similarity=0.235 Sum_probs=140.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|.. +|+++.++++++| ++++|+||||||||||+++|. +++|.+... ..+.++++
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~------~~~~~i~~ 63 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK------MRQKKLSD 63 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH------hhhhhHHH
Confidence 7788887 8999999999998 899999999999999999997 334543211 11235899
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhc-------CCCCHHHHHH--HHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 172 VFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISE--LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~--~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
++|+..+++.+|+.+++.+..... .+...+.... ...++++.++|.+..++++..||+|||||++||||++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~ 143 (212)
T cd03274 64 LIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA 143 (212)
T ss_pred HhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence 999988888889888776543210 1111111000 0145667888888888899999999999999999996
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
... ..+|++++|||||+|||+.++..+.+.|+++.++ .|+|++||+. ++.++|||+
T Consensus 144 ~~~---~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~-----------~~~iivs~~~-~~~~~~d~v 199 (212)
T cd03274 144 LHH---YKPTPLYVMDEIDAALDFRNVSIVANYIKERTKN-----------AQFIVISLRN-NMFELADRL 199 (212)
T ss_pred hcc---cCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCC-----------CEEEEEECcH-HHHHhCCEE
Confidence 300 0047999999999999999999999999998654 3899999995 667899988
No 377
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=3.6e-30 Score=238.18 Aligned_cols=239 Identities=24% Similarity=0.340 Sum_probs=191.2
Q ss_pred ceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEECCCCCCh
Q 016804 90 VLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA----PDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 90 ~~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~----p~sG~I~i~G~~i~~~~~~ 161 (382)
+.+.++|++..+. -.+++++||+++.+||+-|+||.||||||-..|.|+|..+ .+.-..++++.++-.+...
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 3577889988883 3579999999999999999999999999999999999975 3566788888887666443
Q ss_pred hhh--ccceEEEEecCCC--CCCCCCHHHHHHhh--HhhcCCCCH---HHHHHHHHHHHHHcCCcc---cccCCCCCCCh
Q 016804 162 EEI--SGLRIGLVFQSAA--LFDSLTVRENVGFL--LYENSKMRD---EQISELVKENLAAVGLKG---VEDRLPSELSG 229 (382)
Q Consensus 162 ~~~--~~~~Ig~V~Q~~~--l~~~lTV~eni~~~--~~~~~~~~~---~~~~~~v~~~L~~~gL~~---~~~~~~~~LSG 229 (382)
+.+ ....|+++||+|. |-|+.+|...+.-. .+.+.+... .-.++++-++|.++|+.+ ....||.+|.-
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 321 1234999999985 56665665444221 111111100 112455778999999964 45679999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
||=|+|.||.|++. +|++||.||||+++|+.++.+++++|.++++... .||++++||+..+.+.
T Consensus 162 GE~QKVMIA~A~An-------qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~---------TtILL~s~Dl~~is~W 225 (330)
T COG4170 162 GECQKVMIAIALAN-------QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN---------TTILLISHDLQMISQW 225 (330)
T ss_pred Ccceeeeeehhhcc-------CCceEeccCCCcccCccHHHHHHHHHHHhhccCC---------ceEEEEcccHHHHHHH
Confidence 99999999999986 7999999999999999999999999999987642 6999999999999999
Q ss_pred hchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 310 VDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 310 aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
||++ -||+.|+-++.+.++++. .+.||++++++..
T Consensus 226 ~d~i------------------------------~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~a 261 (330)
T COG4170 226 ADKI------------------------------NVLYCGQTVESAPSEELVTMPHHPYTQALIRA 261 (330)
T ss_pred hhhe------------------------------EEEEecccccccchhHHhcCCCCchHHHHHHh
Confidence 9988 899999999999888865 5789999998874
No 378
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=250.00 Aligned_cols=230 Identities=26% Similarity=0.444 Sum_probs=198.5
Q ss_pred CCCCCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC-CCCCCh
Q 016804 84 PEDDGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR-AGLISD 161 (382)
Q Consensus 84 ~~~~~~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i-~~~~~~ 161 (382)
+...+++.++++||+..-.. .+.+++|||+|++||++||.|=.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ..+ +.
T Consensus 250 ~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~-~~ 328 (501)
T COG3845 250 PSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRL-SP 328 (501)
T ss_pred CCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccC-CH
Confidence 44456889999999987643 5789999999999999999999999999999999999999999999999996 333 33
Q ss_pred hhhccceEEEEecCC---CCCCCCCHHHHHHhhHhhc-----C-CCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHH
Q 016804 162 EEISGLRIGLVFQSA---ALFDSLTVRENVGFLLYEN-----S-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGM 231 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~---~l~~~lTV~eni~~~~~~~-----~-~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGq 231 (382)
..+.+..+||||.|. .+.+.+|+.||+.+..+.. . -.+..++.+.+.++++.+++. .-...+...||||+
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 333445799999985 5788899999998865421 1 146678888899999999996 45566789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
+||+-+||-|.+ +|++||+.+||.|||..+.+.+.+.|.+.+++| ++|+++|-|++++..+||
T Consensus 409 qQK~IlaREl~~-------~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G----------~AVLLiS~dLDEil~lsD 471 (501)
T COG3845 409 QQKLILARELAR-------RPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG----------KAVLLISEDLDEILELSD 471 (501)
T ss_pred eehhhhhhhhcc-------CCCEEEEcCCCccccHHHHHHHHHHHHHHHhcC----------CEEEEEehhHHHHHHhhh
Confidence 999999999986 699999999999999999999999999999987 599999999999999999
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
|| .||++|+|+....+++.+
T Consensus 472 rI------------------------------aVi~~Gri~~~~~~~~~t 491 (501)
T COG3845 472 RI------------------------------AVIYEGRIVGIVPPEEAT 491 (501)
T ss_pred ee------------------------------eeeeCCceecccccccCC
Confidence 88 999999999888777643
No 379
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.7e-29 Score=249.14 Aligned_cols=251 Identities=24% Similarity=0.319 Sum_probs=187.3
Q ss_pred hhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEE
Q 016804 20 SSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYK 99 (382)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~ 99 (382)
-+++..+...- -.+..++...+|+.+.--.|+......+... | + -..|+++||.|
T Consensus 276 r~pL~s~vgil-----P~l~~AqvA~~kiakle~~~~~a~~~~~q~~------------------p-~-~~~lelrnvrf 330 (546)
T COG4615 276 RTPLLSAVGIL-----PTLLTAQVAFNKIAKLELAPYKADFPRPQAF------------------P-D-WKTLELRNVRF 330 (546)
T ss_pred hhHHHHHHhhh-----hHHHHHHHHHHHHHHhhcCCccccCCCCCcC------------------C-c-ccceeeeeeee
Confidence 44554444333 3677889999999988877754443332111 1 1 12499999999
Q ss_pred EeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 100 SFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 100 ~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
.|.+. .-+..||++|++||++-|+|.||||||||++++.||++|++|+|++||+++..-. .++.+ .-++-||-|.+|
T Consensus 331 ay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~-ledYR-~LfSavFsDyhL 408 (546)
T COG4615 331 AYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQ-LEDYR-KLFSAVFSDYHL 408 (546)
T ss_pred ccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCC-HHHHH-HHHHHHhhhHhh
Confidence 99765 6799999999999999999999999999999999999999999999999876532 22222 237889999999
Q ss_pred CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc---ccccCC--CCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRL--PSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~---~~~~~~--~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
|+.+--.|+- .+ .+.++.+|+++.+. ...+.. +-.||.|||+|+|+--||+- +-+
T Consensus 409 F~~ll~~e~~---------as----~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE-------eR~ 468 (546)
T COG4615 409 FDQLLGPEGK---------AS----PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE-------ERD 468 (546)
T ss_pred hHhhhCCccC---------CC----hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh-------hCC
Confidence 9852111110 12 23355666666654 333433 46799999999999999996 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCC
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVA 332 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~-l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~ 332 (382)
|+++||=-+..||.-++.+...+-- ++++| +||+.||||-.-. .+|||+
T Consensus 469 Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG----------KTI~aIsHDd~YF-~~ADrl------------------- 518 (546)
T COG4615 469 ILVLDEWAADQDPAFRREFYQVLLPLLKEQG----------KTIFAISHDDHYF-IHADRL------------------- 518 (546)
T ss_pred eEEeehhhccCChHHHHHHHHHHhHHHHHhC----------CeEEEEecCchhh-hhHHHH-------------------
Confidence 9999999999999999999887655 45667 5999999996554 468888
Q ss_pred CCcccccccEEEEEeCCeEEEEecccc
Q 016804 333 PDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 333 ~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
+.|.+|++++.- +++
T Consensus 519 -----------l~~~~G~~~e~t-ge~ 533 (546)
T COG4615 519 -----------LEMRNGQLSELT-GEE 533 (546)
T ss_pred -----------HHHhcCceeecc-ccc
Confidence 778899998864 444
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=1.1e-28 Score=282.57 Aligned_cols=222 Identities=22% Similarity=0.345 Sum_probs=163.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHH---------HHHcCCCCCc----cE----EEECC
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK---------IIAGLLAPDK----GE----VYIRG 152 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLk---------lI~Gl~~p~s----G~----I~i~G 152 (382)
..|+++|++. ..|+++||+|++||+++|.|+||||||||++ .|.|...+.. +. |.|+-
T Consensus 599 ~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 599 GTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred CeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 3688998873 3799999999999999999999999999999 6666543311 11 22322
Q ss_pred EECCCCCC---hh------hhc---------c---c-eEEEEecC------------------C----------------
Q 016804 153 RKRAGLIS---DE------EIS---------G---L-RIGLVFQS------------------A---------------- 176 (382)
Q Consensus 153 ~~i~~~~~---~~------~~~---------~---~-~Ig~V~Q~------------------~---------------- 176 (382)
..+..... .. +++ + . ...|.|+. +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 22111000 00 000 0 0 12233332 0
Q ss_pred ----CCCCCCCHHHHHHhhHhhcC--CCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 177 ----ALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 177 ----~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
..|...||.|++.+...... ....+++.+++ ++|+.+||.+. .++.+.+||||||||++|||||+.. +
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~----~ 828 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAP----S 828 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhc----C
Confidence 24667899999988764321 12344566666 58999999876 7999999999999999999999731 1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
.+|++|||||||+|||+..+..++++|++++++| .|||+|||+++.+ ++||++
T Consensus 829 ~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G----------~TVIiIsHdl~~i-~~aDrV---------------- 881 (1809)
T PRK00635 829 KKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG----------HTVVIIEHNMHVV-KVADYV---------------- 881 (1809)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHH-HhCCEE----------------
Confidence 2699999999999999999999999999998776 4999999999998 788877
Q ss_pred cCCCCcccccccEEEEEe------CCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFLY------EGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~------~G~i~~~g~~~~~~~ 362 (382)
++|. +|+++++|+++++..
T Consensus 882 --------------i~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 882 --------------LELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred --------------EEEccCCCCCCCEEEEeCCHHHHHh
Confidence 8885 799999999988754
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=3.4e-29 Score=275.74 Aligned_cols=141 Identities=28% Similarity=0.376 Sum_probs=116.9
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC---cEEEE
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEP---EVLLY 257 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P---~iLLL 257 (382)
+||.|++.|.... . .+. ...+.|+.+||.. .+++.+.+|||||+||++|||+|++ +| +++||
T Consensus 792 ltv~E~l~~f~~~----~--~i~-~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~-------~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAI----P--KIA-RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSK-------RSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhc----h--hhh-HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhc-------CCCCCeEEEE
Confidence 6888888774321 1 122 2357899999986 5789999999999999999999997 47 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCccc
Q 016804 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEV 337 (382)
Q Consensus 258 DEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~ 337 (382)
||||+|||+..+..++++|+++.++| .|||+|||+++.+. .||++
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G----------~TVIiitH~~~~i~-~aD~i------------------------ 902 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKG----------NTVVVIEHNLDVIK-TADWI------------------------ 902 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHH-hCCEE------------------------
Confidence 99999999999999999999998776 49999999999985 68877
Q ss_pred ccccEEEEE------eCCeEEEEecccccccCCCHHHHHHHcCCCC
Q 016804 338 FFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASGSLE 377 (382)
Q Consensus 338 ~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
++| ++|+|+++|+++++.......+.+|+.+.++
T Consensus 903 ------i~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~~~~~ 942 (943)
T PRK00349 903 ------IDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLKPVLE 942 (943)
T ss_pred ------EEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHHHHhh
Confidence 999 7999999999998876555777887765443
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.96 E-value=1.8e-29 Score=234.26 Aligned_cols=160 Identities=25% Similarity=0.330 Sum_probs=124.1
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHH----cCCCCCccEEEECCEECCCCCChhhhccceEEEEecCC-----CCCC
Q 016804 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIA----GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA-----ALFD 180 (382)
Q Consensus 110 vsl~i~~Ge~vaLiGpNGaGKSTLLklI~----Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~-----~l~~ 180 (382)
.++++.+| +++|+||||||||||+++|. |..+|++|.+..+.+.+.. . ..+..|+++||++ ....
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~--~~~~~v~~~f~~~~~~~~~v~r 89 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---G--EVRAQVKLAFENANGKKYTITR 89 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---C--CCcEEEEEEEEeCCCCEEEEEE
Confidence 34566677 99999999999999999995 9999988877622221111 1 1223699999998 3455
Q ss_pred CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHH------HHHHHHHhcCCCCCCCCCcE
Q 016804 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR------VALARSIIFDNTKESVEPEV 254 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQR------VaIArAL~~~~~~~a~~P~i 254 (382)
.+|+++|+.+. ...+ +.+.+ ++.+.+||+||+|| ++|||||+. +|++
T Consensus 90 ~~~~~~~~~~~-------~~~~----~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~-------~p~i 142 (204)
T cd03240 90 SLAILENVIFC-------HQGE----SNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGS-------NCGI 142 (204)
T ss_pred EhhHhhceeee-------chHH----HHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhcc-------CCCE
Confidence 56899999663 1122 22222 78899999999996 789999986 6999
Q ss_pred EEEeCCCCCCCHHHHH-HHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 255 LLYDEPTAGLDPIAST-VVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 255 LLLDEPtagLD~~~~~-~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+||||||++||+..+. .+.++|++++++ + .|+|++||+++.+. .||++
T Consensus 143 lllDEP~~~LD~~~~~~~l~~~l~~~~~~~~----------~~iiiitH~~~~~~-~~d~i 192 (204)
T cd03240 143 LALDEPTTNLDEENIEESLAEIIEERKSQKN----------FQLIVITHDEELVD-AADHI 192 (204)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHHHhccC----------CEEEEEEecHHHHh-hCCEE
Confidence 9999999999999999 999999999876 4 59999999998764 68877
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=7.7e-30 Score=260.63 Aligned_cols=187 Identities=28% Similarity=0.388 Sum_probs=157.0
Q ss_pred CcceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 88 GDVLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
..|.+.+.||+|.|.+. .++++++|-|..++.+++|||||||||||||++.|.+.|+.|.|.-.-..
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~------------ 453 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN------------ 453 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc------------
Confidence 35789999999999766 58999999999999999999999999999999999999999998754321
Q ss_pred ceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 167 LRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 167 ~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
++++.-|+. .+--..++.|++.-.+ .. ....+.++.++.++||+ +....+.++||+|||.||.+|+.+++
T Consensus 454 -~~~~y~Qh~~e~ldl~~s~le~~~~~~---~~---~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 454 -KLPRYNQHLAEQLDLDKSSLEFMMPKF---PD---EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred -cchhhhhhhHhhcCcchhHHHHHHHhc---cc---cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhc
Confidence 355666653 2333467888875422 11 22345678899999998 56678889999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|.+|||||||+|||..+...+.+.|.++ .| ++|+||||...+.++++++
T Consensus 527 -------qP~lLlLDEPtnhLDi~tid~laeaiNe~--~G-----------gvv~vSHDfrlI~qVaeEi 576 (614)
T KOG0927|consen 527 -------QPHLLLLDEPTNHLDIETIDALAEAINEF--PG-----------GVVLVSHDFRLISQVAEEI 576 (614)
T ss_pred -------CCcEEEecCCCcCCCchhHHHHHHHHhcc--CC-----------ceeeeechhhHHHHHHHHh
Confidence 69999999999999999999999999887 23 7999999999999999999
No 384
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=2e-28 Score=270.13 Aligned_cols=217 Identities=30% Similarity=0.439 Sum_probs=182.0
Q ss_pred eEEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEECCCCCChhhh
Q 016804 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 91 ~I~~~nvs~~y----g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i~~~~~~~~~ 164 (382)
+...+|+.+.- +.+++|+|||=-+++|-.+||+|+|||||||||++|+|-..- .+|+|+++|.+..+ ..
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q-----~t 861 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ-----ET 861 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch-----hh
Confidence 45566666555 457899999999999999999999999999999999997542 47999999987431 22
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcccccCCCCC----CChHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLPSE----LSGGMKKRVALA 238 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~----LSGGqrQRVaIA 238 (382)
-++.+|||-|+....+.+||+|-+.|.+..+ ...+.++..+.++++++.++|+++.+..++. ||.+||+|+.||
T Consensus 862 F~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIG 941 (1391)
T ss_pred hccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEE
Confidence 2346999999988789999999999987544 3355666678899999999999998888876 999999999999
Q ss_pred HHHhcCCCCCCCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HHHHhhchhccc
Q 016804 239 RSIIFDNTKESVEP-EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLF 316 (382)
Q Consensus 239 rAL~~~~~~~a~~P-~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~~~~aDrv~~~ 316 (382)
--|+. +| .||+|||||||||..+...+++.+++++..| .||+.+-|+.+ .+.+.-||+
T Consensus 942 VELvA-------~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tG----------qtIlCTIHQPS~~ife~FD~L--- 1001 (1391)
T KOG0065|consen 942 VELVA-------NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTG----------QTILCTIHQPSIDIFEAFDEL--- 1001 (1391)
T ss_pred EEEec-------CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcC----------CeEEEEecCCcHHHHHHHhHH---
Confidence 99986 69 9999999999999999999999999999988 49999999874 445566777
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeC-CeEEEEecccc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYE-GKIVWQGMTHE 359 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~-G~i~~~g~~~~ 359 (382)
++|++ |+.|..|+..+
T Consensus 1002 ---------------------------LLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 1002 ---------------------------LLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ---------------------------HHHhcCCeEEEecCccc
Confidence 66654 89999997654
No 385
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.96 E-value=8.1e-28 Score=251.76 Aligned_cols=187 Identities=26% Similarity=0.379 Sum_probs=155.4
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+..|+++||+..-++ +..|++.||+|++||.+-|.||||||||||+|+|+|++|--+|+|.+-.. .
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-------------~ 456 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-------------S 456 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-------------C
Confidence 456999999999965 67899999999999999999999999999999999999999998876411 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC------CCCCChHHHHHHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL------PSELSGGMKKRVALARSI 241 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~------~~~LSGGqrQRVaIArAL 241 (382)
.+-|+||.|++... |.+|-|.++..... .+ ++.+.++|.++||.++.++. -..||+|||||+++||.|
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~~~-~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil 530 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAAPD-FS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL 530 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCCCC-CC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH
Confidence 47899999998775 99999988653221 33 34467889999998765553 268999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
++ +|++++|||.|++||+.++..+++++++-..+ +|||-|.|+-.. ..+.++.
T Consensus 531 L~-------kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~-----------~tvISV~Hr~tl-~~~h~~~ 583 (604)
T COG4178 531 LH-------KPKWVFLDEATSALDEETEDRLYQLLKEELPD-----------ATVISVGHRPTL-WNFHSRQ 583 (604)
T ss_pred Hc-------CCCEEEEecchhccChHHHHHHHHHHHhhCCC-----------CEEEEeccchhh-HHHHhhh
Confidence 97 79999999999999999999999998774332 699999998655 4555554
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=243.51 Aligned_cols=213 Identities=26% Similarity=0.420 Sum_probs=156.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC--CEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR--GRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~--G~~i~~~~~~~~~~~~~ 168 (382)
-+.++|++++|.++.+++|++|++.+|+.+||+|||||||||+|++|.|-..|..=++-+. .+++.. +.. . -
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~p--s~~--~--a 148 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEP--SEK--Q--A 148 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCC--chH--H--H
Confidence 3899999999999999999999999999999999999999999999999999865444332 222110 110 0 0
Q ss_pred EEEEec--------------CCCCC-CC--CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChH
Q 016804 169 IGLVFQ--------------SAALF-DS--LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGG 230 (382)
Q Consensus 169 Ig~V~Q--------------~~~l~-~~--lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGG 230 (382)
+-++++ +...+ +. .--.+++.. +...++.+..+.++.++|.-+|.. +..++....||||
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~---r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYE---RLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHH---HHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 111211 00000 00 000111110 111234445555666677777764 6888999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 231 qrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
+|.|++|||||.. +|++|||||||++||+.+...+.+.|.+... .++++++|+.+++-.+|
T Consensus 226 wrmR~aLAr~Lf~-------kP~LLLLDEPtnhLDleA~~wLee~L~k~d~------------~~lVi~sh~QDfln~vC 286 (614)
T KOG0927|consen 226 WRMRAALARALFQ-------KPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR------------IILVIVSHSQDFLNGVC 286 (614)
T ss_pred HHHHHHHHHHHhc-------CCCEEEecCCccCCCHHHHHHHHHHHHhccC------------ceEEEEecchhhhhhHh
Confidence 9999999999997 6999999999999999999999999987632 27999999999999999
Q ss_pred chhccccccccchheehhccCCCCcccccccEEEEEeCCe-EEEEecccccc
Q 016804 311 DRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGK-IVWQGMTHEFT 361 (382)
Q Consensus 311 Drv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~-i~~~g~~~~~~ 361 (382)
.+| +.|++++ +.++|+-+++.
T Consensus 287 T~I------------------------------i~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 287 TNI------------------------------IHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred hhh------------------------------heecccceeeecCCHHHHh
Confidence 998 8899998 66778666653
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=239.59 Aligned_cols=189 Identities=30% Similarity=0.448 Sum_probs=151.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+.+++-.+++|.||+. .|+-=.=+|..||+++++||||-||||+.++|+|.++|++|. ..+ .+
T Consensus 340 ~~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~------------~~ 402 (591)
T COG1245 340 DTLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED------------LK 402 (591)
T ss_pred ceeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc------------ce
Confidence 3457777788888743 344444457788999999999999999999999999999998 211 25
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|+|=||--.--...||.+.+.-..... .... -.-.++++-++|++..++++.+|||||.|||+||.||.+
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~--~~~s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~r----- 472 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSA--FGSS---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSR----- 472 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhh--cccc---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhcc-----
Confidence 899999654333479999886533211 1111 112467888999999999999999999999999999987
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+++++|||||+|.||.+.+..+-+.|+++..+.+ +|.++|.||+-.+..++||++|
T Consensus 473 --eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~---------kta~vVdHDi~~~dyvsDr~iv 528 (591)
T COG1245 473 --EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNE---------KTALVVDHDIYMIDYVSDRLIV 528 (591)
T ss_pred --ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcC---------ceEEEEecceehhhhhhceEEE
Confidence 6999999999999999999999999999987643 6999999999999999998833
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=4.2e-27 Score=217.53 Aligned_cols=173 Identities=21% Similarity=0.230 Sum_probs=122.4
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~ 185 (382)
.++++++++.+| +.+|+||||||||||+..|.-.+..... ....|.....+.... .....|.+.||+..+++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~-~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG-ESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC-CCeEEEEEEEEcCCccC-----
Confidence 346778888887 8899999999999999999854433221 111232111110000 01225899999887775
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
| . ... ..++.+.++++. .+..++++.+||+|||||++||+||+. ..+.+|+++||||||++||
T Consensus 83 -~---~------~~~-~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~---~~~~~p~illlDEP~~glD 145 (198)
T cd03276 83 -N---P------LCV-LSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSL---WEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred -C---c------CCH-HHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHH---hcccCCCEEEecCcccccC
Confidence 1 0 111 113446666766 666788999999999999999999941 0002699999999999999
Q ss_pred HHHHHHHHHHHHHHHHc--CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 266 PIASTVVEDLIRSVHKK--GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 266 ~~~~~~l~~lL~~l~~~--g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+..+..+.+.|+++.++ +. .|+|++||+++.+.++ |||
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~~---------~~iii~th~~~~i~~~-d~v 185 (198)
T cd03276 146 MVNRKISTDLLVKEAKKQPGR---------QFIFITPQDISGLASS-DDV 185 (198)
T ss_pred HHHHHHHHHHHHHHHhcCCCc---------EEEEEECCcccccccc-cce
Confidence 99999999999998654 21 4899999999999876 877
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=2e-27 Score=226.12 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=128.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE-CCCCCCh--hhhccce
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-RAGLISD--EEISGLR 168 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~-i~~~~~~--~~~~~~~ 168 (382)
|+++|. ++|.+...++ ..++ +++|+||||||||||+++|++++.++.|+++..+.+ +...... .......
T Consensus 4 i~l~nf-~~~~~~~~~~-----~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~ 76 (247)
T cd03275 4 LELENF-KSYKGRHVIG-----PFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY 76 (247)
T ss_pred EEEECc-cccCCCeeec-----CCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE
Confidence 678886 6776443332 2344 999999999999999999999998888888765421 1000000 0001113
Q ss_pred EEEEe--cCCCC-CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc--------------ccc--------CC
Q 016804 169 IGLVF--QSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--------------VED--------RL 223 (382)
Q Consensus 169 Ig~V~--Q~~~l-~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~--------------~~~--------~~ 223 (382)
|..+| |++.. +-..++.+.... . ...+ .....+.+.++++.+|+.. ..+ ++
T Consensus 77 v~~~f~~~~~~~~~~~~~~~~~~~~-~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~ 152 (247)
T cd03275 77 VTAVYEDDDGEEKTFRRIITGGSSS-Y-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRD 152 (247)
T ss_pred EEEEEEcCCCcEEEEEEEEECCceE-E-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhh
Confidence 44444 43321 111222222111 0 0111 1112334567888888842 222 33
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
+.+||+|||||++||||++.++ ..+|+++||||||++||+..+..+.+.|++++++| .++|+|||+.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~---~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g----------~~vi~isH~~ 219 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHS---YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPN----------FQFIVISLKE 219 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhc---cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCC----------cEEEEEECCH
Confidence 4899999999999999998410 01389999999999999999999999999997665 5999999997
Q ss_pred HHHHHhhchh
Q 016804 304 STIRRAVDRL 313 (382)
Q Consensus 304 ~~~~~~aDrv 313 (382)
+.+ ..|||+
T Consensus 220 ~~~-~~~d~i 228 (247)
T cd03275 220 EFF-SKADAL 228 (247)
T ss_pred HHH-hhCCeE
Confidence 665 679988
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=3.6e-26 Score=251.42 Aligned_cols=127 Identities=29% Similarity=0.379 Sum_probs=103.1
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP 260 (382)
+||.|.+.|.... . .+. ...++|+.+||.. .+++++.+|||||+||++||++|+++ ..+|+++|||||
T Consensus 790 ~tv~e~~~f~~~~----~--~i~-~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~----~~~p~llILDEP 858 (924)
T TIGR00630 790 MTVEEAYEFFEAV----P--SIS-RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKR----STGRTLYILDEP 858 (924)
T ss_pred CcHHHHHHHHHhc----c--chh-HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhc----CCCCCEEEEECC
Confidence 5666766664211 1 111 2457899999975 47899999999999999999999852 125999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccc
Q 016804 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFI 340 (382)
Q Consensus 261 tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (382)
|+|||+..+..++++|+++.++| .|+|++||+++.+. .||++
T Consensus 859 tsgLD~~~~~~L~~~L~~l~~~G----------~TVIvi~H~~~~i~-~aD~i--------------------------- 900 (924)
T TIGR00630 859 TTGLHFDDIKKLLEVLQRLVDQG----------NTVVVIEHNLDVIK-TADYI--------------------------- 900 (924)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEE---------------------------
Confidence 99999999999999999998776 49999999999885 58877
Q ss_pred cEEEEE------eCCeEEEEeccccc
Q 016804 341 YRLIFL------YEGKIVWQGMTHEF 360 (382)
Q Consensus 341 ~~ii~l------~~G~i~~~g~~~~~ 360 (382)
++| ++|+|++.|+++++
T Consensus 901 ---i~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 901 ---IDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ---EEecCCccCCCCEEEEeCCHHHh
Confidence 999 79999999977654
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.2e-27 Score=238.30 Aligned_cols=184 Identities=25% Similarity=0.373 Sum_probs=140.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
-|.+.+.+..||++.+|.+-++++..|..+||+|+||+|||||||+|+. |+|.....+ ++.. =-
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-------qE~~---g~ 143 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-------QEVR---GD 143 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-------hhee---cc
Confidence 3889999999999999999999999999999999999999999999997 666554432 1111 11
Q ss_pred EEecC-CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 171 LVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 171 ~V~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
+++-. ..+-..+++.+.+..-....... ...+...++|.-+|.+ +...++..+||||.|.|++|||||.+
T Consensus 144 ~t~~~~~~l~~D~~~~dfl~~e~~l~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~----- 215 (582)
T KOG0062|consen 144 DTEALQSVLESDTERLDFLAEEKELLAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFA----- 215 (582)
T ss_pred chHHHhhhhhccHHHHHHHHhhhhhhccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhc-----
Confidence 22211 12233344444443221101111 2233344488899997 46677889999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|+||||||||+.||..+...+.+.|..+. .|+|+||||-+++-..|..|
T Consensus 216 --~pDlLLLDEPTNhLDv~av~WLe~yL~t~~-------------~T~liVSHDr~FLn~V~tdI 265 (582)
T KOG0062|consen 216 --KPDLLLLDEPTNHLDVVAVAWLENYLQTWK-------------ITSLIVSHDRNFLNTVCTDI 265 (582)
T ss_pred --CCCEEeecCCcccchhHHHHHHHHHHhhCC-------------ceEEEEeccHHHHHHHHHHH
Confidence 699999999999999999999999998763 39999999999999999988
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7e-26 Score=230.62 Aligned_cols=198 Identities=26% Similarity=0.354 Sum_probs=163.5
Q ss_pred CcceEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 88 GDVLIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
..|.+++.+|+|.|... +.+.+++++++.-+.++++|+||+||||++|++.|-..|.+|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~------------- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP------------- 425 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-------------
Confidence 44789999999999654 499999999999999999999999999999999999999999887764
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
+++|+|-+|+..=+-.++|-. +.+....+.+.. ++.++..|..+||+ +...+....||||||-||++|.+...
T Consensus 426 r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~- 499 (582)
T KOG0062|consen 426 RLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN- 499 (582)
T ss_pred cceecchhHhhhhHHHHHhHH-HHHHHHhCCCCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC-
Confidence 237999999754222233322 222222233333 44567789999997 46666689999999999999999986
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|.+|+|||||+.||..+...+-+.|+.+. | .||+||||.+++...|+.+
T Consensus 500 ------~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--G-----------GVv~VSHd~~fi~~~c~E~----------- 549 (582)
T KOG0062|consen 500 ------NPHLLVLDEPTNHLDRDSLGALAKALKNFN--G-----------GVVLVSHDEEFISSLCKEL----------- 549 (582)
T ss_pred ------CCcEEEecCCCccccHHHHHHHHHHHHhcC--C-----------cEEEEECcHHHHhhcCcee-----------
Confidence 699999999999999999999999998873 3 5999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEE
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVW 353 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~ 353 (382)
|+.++|++..
T Consensus 550 -------------------Wvve~g~vt~ 559 (582)
T KOG0062|consen 550 -------------------WVVEDGKVTP 559 (582)
T ss_pred -------------------EEEcCCcEEe
Confidence 9999999965
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.4e-25 Score=224.87 Aligned_cols=186 Identities=31% Similarity=0.474 Sum_probs=151.6
Q ss_pred CCCCCCcceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh
Q 016804 83 EPEDDGDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 83 ~~~~~~~~~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
+|+.-..|++-+.||+|.| |.++.+.+++|-|.--..+|||||||.||||||++|.|-+.|+.|+.+=+-
T Consensus 578 ep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh--------- 648 (807)
T KOG0066|consen 578 EPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH--------- 648 (807)
T ss_pred CCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc---------
Confidence 3444566899999999999 567899999999999999999999999999999999999999999875432
Q ss_pred hhhccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc-CCCCCCChHHHHHHHHH
Q 016804 162 EEISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-RLPSELSGGMKKRVALA 238 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~-~~~~~LSGGqrQRVaIA 238 (382)
+++||+.-|+.. |-..-|..|++.-.+ ..+. +.++..|-.+||...++ -.+..|||||+-||++|
T Consensus 649 ----rL~iG~FdQh~~E~L~~Eetp~EyLqr~F----Nlpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRVala 716 (807)
T KOG0066|consen 649 ----RLRIGWFDQHANEALNGEETPVEYLQRKF----NLPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALA 716 (807)
T ss_pred ----eeeeechhhhhHHhhccccCHHHHHHHhc----CCCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHH
Confidence 347999999863 555567777764322 2333 33567899999975544 35789999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
-.-+. .|+||||||||++||.++...+-+.|+++. | .|||||||-..+.+.
T Consensus 717 eLal~-------~PDvlILDEPTNNLDIESIDALaEAIney~--G-----------gVi~VsHDeRLi~eT 767 (807)
T KOG0066|consen 717 ELALG-------GPDVLILDEPTNNLDIESIDALAEAINEYN--G-----------GVIMVSHDERLIVET 767 (807)
T ss_pred HHhcC-------CCCEEEecCCCCCcchhhHHHHHHHHHhcc--C-----------cEEEEecccceeeec
Confidence 87765 699999999999999999999999998873 3 699999998776553
No 394
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=2.9e-24 Score=221.27 Aligned_cols=193 Identities=23% Similarity=0.306 Sum_probs=153.0
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
+.+|++++|+..-++ ..+++|+||+|+.|+-+-|.||||||||+|+|.++|||+-.+|++.--.+.- .
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-----~----- 500 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-----P----- 500 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----C-----
Confidence 467999999999865 4578889999999999999999999999999999999999999998654320 0
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqrQRV 235 (382)
..+-||||.|++-.+ |.+|.|.++........+....+.+.+.|+.++|.+...+. ...||+|||||+
T Consensus 501 ~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 501 KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred CceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 147899999997665 99999998753222222222234566677777776544433 268999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
++||-+.+ +|++-+|||-||++|...+..+.+.+++. | +|.|-|+|+-+.-. +-|.+
T Consensus 580 a~ARLfy~-------kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---g----------iT~iSVgHRkSL~k-fHd~~ 636 (659)
T KOG0060|consen 580 AFARLFYH-------KPKFAILDECTSAVTEDVEGALYRKCREM---G----------ITFISVGHRKSLWK-FHDYV 636 (659)
T ss_pred HHHHHHhc-------CCceEEeechhhhccHHHHHHHHHHHHHc---C----------CeEEEeccHHHHHh-hhhEE
Confidence 99999996 79999999999999999998888877664 4 69999999987765 44533
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.90 E-value=1.2e-23 Score=194.08 Aligned_cols=136 Identities=19% Similarity=0.304 Sum_probs=101.7
Q ss_pred eeeEeeeEEEeCCc-EEEEEcCCCccHHHHHHHHH--------cCCCCCccEEEECCEECCCCCChhhhccceEEEEecC
Q 016804 105 HILRGVSFKIRHGE-AVGIIGPSGTGKSTILKIIA--------GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge-~vaLiGpNGaGKSTLLklI~--------Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
+.+-++||++.+|+ +++|.||||||||||||+|+ |+.-|....+ .++|+.|.
T Consensus 15 ~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-------------------~~~~~~~~ 75 (200)
T cd03280 15 EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-------------------SLPVFENI 75 (200)
T ss_pred CceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-------------------cCcCccEE
Confidence 34668999999995 79999999999999999998 4433321000 13333332
Q ss_pred CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 016804 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iL 255 (382)
.. .++..+..++..+++|+||||++.|++++. +|+++
T Consensus 76 ~~-----------------------------------~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~--------~p~ll 112 (200)
T cd03280 76 FA-----------------------------------DIGDEQSIEQSLSTFSSHMKNIARILQHAD--------PDSLV 112 (200)
T ss_pred EE-----------------------------------ecCchhhhhcCcchHHHHHHHHHHHHHhCC--------CCcEE
Confidence 11 111222344556799999999999999874 59999
Q ss_pred EEeCCCCCCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 256 LYDEPTAGLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 256 LLDEPtagLD~~~~~~l~-~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+||||+|||+..+..+. .+++++.+.+ .++|++||+. .+..+||++
T Consensus 113 llDEp~~glD~~~~~~i~~~~l~~l~~~~----------~~vi~~tH~~-~l~~~~d~~ 160 (200)
T cd03280 113 LLDELGSGTDPVEGAALAIAILEELLERG----------ALVIATTHYG-ELKAYAYKR 160 (200)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCHH-HHHHHHhcC
Confidence 999999999999999986 5788887665 5999999984 566788888
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.90 E-value=8.2e-23 Score=188.80 Aligned_cols=208 Identities=21% Similarity=0.293 Sum_probs=160.2
Q ss_pred CcceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 88 GDVLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
++..|++.++.|+|. ..+++-|+|++++.|...-+||.||||||||||+|+|---.-.|.|.+.|++.-.-..-. ..
T Consensus 10 ~~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~--~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE--SS 87 (291)
T ss_pred ccceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc--cc
Confidence 345699999999995 468999999999999999999999999999999999987777799999998642210000 11
Q ss_pred ceEEEEec----------CCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHH
Q 016804 167 LRIGLVFQ----------SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 167 ~~Ig~V~Q----------~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
-...|+-- +..+--.+++.+.| |+. .+.+. ++-+++++.++++ +..+.+.+|-|||+||.
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV---~g~dp----~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQ 157 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGV---GGDDP----ERREKLIDILDID--LRWRMHKVSDGQRRRVQ 157 (291)
T ss_pred CceeEecccccccccccccccccccccHHHHH-hhc---cCCCh----hHhhhhhhheecc--ceEEEeeccccchhhhH
Confidence 12344332 22222346666555 433 12222 2234566776665 45667899999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|++.|++ .=++|||||-|-.||..++..+++.+++-+++.+ +||++.||-.+-.+....++
T Consensus 158 icMGLL~-------PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rg---------atIVYATHIFDGLe~Wpthl--- 218 (291)
T KOG2355|consen 158 ICMGLLK-------PFKVLLLDEVTVDLDVLARADLLEFLKEECEQRG---------ATIVYATHIFDGLETWPTHL--- 218 (291)
T ss_pred HHHhccc-------ceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcC---------cEEEEEeeeccchhhcchhE---
Confidence 9999997 3699999999999999999999999999877632 79999999999999998877
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEE
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVW 353 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~ 353 (382)
+.|+.|+++-
T Consensus 219 ---------------------------~yi~~Gkl~~ 228 (291)
T KOG2355|consen 219 ---------------------------VYIKSGKLVD 228 (291)
T ss_pred ---------------------------EEecCCeeee
Confidence 8899999986
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=4.4e-23 Score=192.97 Aligned_cols=182 Identities=20% Similarity=0.215 Sum_probs=107.9
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
++++.+++.+| +.+|+|||||||||||..|.-.+-...... ........+.... .....|-..++...- .=..+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~~~~~~i~~g-~~~~~v~~~~~~~~~---~~~~~ 87 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAKKVGEFVKRG-CDEGTIEIELYGNPG---NIQVD 87 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccccCHHHHhhCC-CCcEEEEEEEEeCCC---ccccC
Confidence 34566666665 778999999999999999877653222100 0110000000000 000123333333210 00112
Q ss_pred HHHhhHh-----hcCCCCHHHHHHHHHHHHHHcCC-cccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC
Q 016804 187 NVGFLLY-----ENSKMRDEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (382)
Q Consensus 187 ni~~~~~-----~~~~~~~~~~~~~v~~~L~~~gL-~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP 260 (382)
|+.+... ....+.+. +.+..++. .+..+..+.+||+|||||+.+|++|+.. ...+|+++|+|||
T Consensus 88 n~~~~~~q~~~~~~~~~~~~-------e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~---~~~~p~llllDEP 157 (213)
T cd03277 88 NLCQFLPQDRVGEFAKLSPI-------ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQ---ELTRCPFRVVDEI 157 (213)
T ss_pred CceEEEchHHHHHHHhCChH-------hHheeeecCCCccccchhhccccHHHHHHHHHHHHHH---hccCCCEEEEecc
Confidence 2211000 00001111 22223322 2345678899999999999888665310 0126999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 261 TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 261 tagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++||+..+..+++.|.++.++ |. .|+|++||++..+...||++
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~~~g~---------~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETACKEGT---------SQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCC---------ceEEEEchhhccCCcccCce
Confidence 9999999999999999999765 42 47999999999999999987
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=7e-23 Score=206.55 Aligned_cols=189 Identities=31% Similarity=0.412 Sum_probs=137.4
Q ss_pred eEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-----------CCEECCCCCChhh
Q 016804 96 NVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI-----------RGRKRAGLISDEE 163 (382)
Q Consensus 96 nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i-----------~G~~i~~~~~~~~ 163 (382)
++..+||. ...|.++- ..++|.++||+||||-||||-+|+|+|-+.|.=|+..= .|.++..+-..-.
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 57788974 23444443 26789999999999999999999999999998664310 1111000000000
Q ss_pred hccceEEEEecC----CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQS----AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~----~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
-...++..=+|- |..+. -+|.|-+.-. ++ .....++.++++|+...+|-+++|||||.||+|||.
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~K-G~v~elLk~~-------de---~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVK-GKVGELLKKV-------DE---RGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred cCCcceecchHHHHHHHHHhc-chHHHHHHhh-------hh---cCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence 001123333342 22333 2566555321 11 123567899999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+++ +++++++|||||-||...+-.+-+++++|.+.+ ++||+|.|||..+.-++|-|
T Consensus 227 ~l~r-------dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~----------k~ViVVEHDLavLD~lsD~v 283 (591)
T COG1245 227 ALLR-------DADVYFFDEPSSYLDIRQRLNAARVIRELAEDG----------KYVIVVEHDLAVLDYLSDFV 283 (591)
T ss_pred HHhc-------cCCEEEEcCCcccccHHHHHHHHHHHHHHhccC----------CeEEEEechHHHHHHhhhee
Confidence 9998 599999999999999999999999999999875 49999999999999999977
No 399
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.87 E-value=2.8e-22 Score=185.66 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=108.1
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
++.+++|++|+. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|...+|+.+
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-----------~~~~~q~~~l~~~~ 74 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-----------SSFELPPVKIFTSI 74 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-----------CccCcccceEEEec
Confidence 356888887765 79999999999999999999988553 2235654321 13677866789999
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
|+.||+.++... ...+. +++.++++.+++ . +|+++|+||||+
T Consensus 75 ~~~d~l~~~~s~----~~~e~-~~~~~iL~~~~~--------------------------~-------~p~llllDEp~~ 116 (199)
T cd03283 75 RVSDDLRDGISY----FYAEL-RRLKEIVEKAKK--------------------------G-------EPVLFLLDEIFK 116 (199)
T ss_pred cchhccccccCh----HHHHH-HHHHHHHHhccC--------------------------C-------CCeEEEEecccC
Confidence 999999886421 12333 557788888773 3 599999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 263 GLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 263 gLD~~~~~~l~-~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
|+|+..+..+. .+++++.+.+ .|+|++||+++.+...
T Consensus 117 glD~~~~~~l~~~ll~~l~~~~----------~tiiivTH~~~~~~~~ 154 (199)
T cd03283 117 GTNSRERQAASAAVLKFLKNKN----------TIGIISTHDLELADLL 154 (199)
T ss_pred CCCHHHHHHHHHHHHHHHHHCC----------CEEEEEcCcHHHHHhh
Confidence 99999988765 5788887655 5999999999998765
No 400
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=8.1e-22 Score=218.18 Aligned_cols=206 Identities=28% Similarity=0.413 Sum_probs=167.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CccEEEECCEECCCCCChhhhccceEEEEecCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP---DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p---~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~ 180 (382)
..+|+|+|.-+++|+.+-++||.||||||||+.++|-++- ..|+|.+||.+...... +..++|++|+...++
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~-----~~~~aY~~e~DvH~p 202 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-----KKTVAYNSEQDVHFP 202 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc-----CceEEeccccccccc
Confidence 4799999999999999999999999999999999998764 35799999998654322 336999999999999
Q ss_pred CCCHHHHHHhhHhhcCC------CCHHHH-HHHHHHHHHHcCCcccccCC-----CCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 181 SLTVRENVGFLLYENSK------MRDEQI-SELVKENLAAVGLKGVEDRL-----PSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~------~~~~~~-~~~v~~~L~~~gL~~~~~~~-----~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
.|||+|-+.|.++.... ..+.+. ....+.+++.+||+.-.|.. .+..|||||+||++|-+++.
T Consensus 203 ~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~----- 277 (1391)
T KOG0065|consen 203 ELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG----- 277 (1391)
T ss_pred eeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec-----
Confidence 99999999997753221 222221 12456899999998655554 57899999999999999996
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH-HHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl-~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+++++.+||+|.|||..+.-++.+.|+++....+ .|.+++-|+. .++..+-
T Consensus 278 --~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~---------~t~~vsi~Q~s~~~~~lF----------------- 329 (1391)
T KOG0065|consen 278 --PASILFWDEITRGLDSSTAFQIIKALRQLAHITG---------ATALVSILQPSPEIYDLF----------------- 329 (1391)
T ss_pred --CcceeeeecccccccHHHHHHHHHHHHHHHhhhc---------ceEEEEeccCChHHHHhh-----------------
Confidence 6999999999999999999999999999987632 4777777753 3333443
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
|.|++|.+|+++.+|+.++.
T Consensus 330 -------------D~v~lL~eG~~iy~Gp~d~~ 349 (1391)
T KOG0065|consen 330 -------------DDVILLSEGYQIYQGPRDEV 349 (1391)
T ss_pred -------------hheeeeeccceEEeccHHHH
Confidence 56699999999999987764
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.86 E-value=8.8e-21 Score=172.82 Aligned_cols=73 Identities=32% Similarity=0.461 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH
Q 016804 227 LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (382)
Q Consensus 227 LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~ 306 (382)
||+|||||++|||+|+.. ...+|+++|+|||+++||+..+..+.+.|.++.+++ .|+|++||+.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~---~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g----------~tiIiiSH~~~~~ 161 (178)
T cd03239 95 LSGGEKSLSALALIFALQ---EIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHT----------SQFIVITLKKEMF 161 (178)
T ss_pred CCHHHHHHHHHHHHHHHh---cCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHH
Confidence 999999999999999620 002699999999999999999999999999997665 5999999999877
Q ss_pred HHhhchh
Q 016804 307 RRAVDRL 313 (382)
Q Consensus 307 ~~~aDrv 313 (382)
. .+||+
T Consensus 162 ~-~adrv 167 (178)
T cd03239 162 E-NADKL 167 (178)
T ss_pred h-hCCeE
Confidence 5 78887
No 402
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.85 E-value=1.2e-21 Score=200.07 Aligned_cols=184 Identities=24% Similarity=0.292 Sum_probs=142.9
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
-|.++||-.--+. ..++..++|+|++|-.+-|+||||||||+|+|+|.||||...|...+- ...++
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P-------------~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP-------------RPNNI 547 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC-------------CCcce
Confidence 3888998877754 457899999999999999999999999999999999999876655431 11258
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHh----hcCCCCHHHHHHHHHHHHHHcCCcccccCCC---------CCCChHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLY----ENSKMRDEQISELVKENLAAVGLKGVEDRLP---------SELSGGMKKRVA 236 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~----~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~---------~~LSGGqrQRVa 236 (382)
-|+||.|++- .-|.+|.|-++-. ..++..++ ....+|+.+.|+..+.+-. ..||||||||++
T Consensus 548 FYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~ 622 (728)
T KOG0064|consen 548 FYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMG 622 (728)
T ss_pred EeccCCCccC-cCcccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHH
Confidence 9999999976 4588998877531 11223332 3556677777765554433 579999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+||.+.+ +|+..+|||-|++..+..+..+.+..+.. | .+.|-|||+.+.... -.++
T Consensus 623 mARm~yH-------rPkyalLDEcTsAvsidvE~~i~~~ak~~---g----------i~llsithrpslwk~-h~~l 678 (728)
T KOG0064|consen 623 MARMFYH-------RPKYALLDECTSAVSIDVEGKIFQAAKDA---G----------ISLLSITHRPSLWKY-HTHL 678 (728)
T ss_pred HHHHHhc-------CcchhhhhhhhcccccchHHHHHHHHHhc---C----------ceEEEeecCccHHHH-HHHH
Confidence 9999997 69999999999999999888877766543 4 699999999988754 3444
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.85 E-value=6.3e-21 Score=190.74 Aligned_cols=168 Identities=30% Similarity=0.432 Sum_probs=134.7
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--------CCCCccEEEECCEECCCCCChhhhccceEEEEecC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--------LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--------~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
..+|+|+||+|++|++++|+|+|||||||||++|+|. ++||+|.|.+--..+ -+++|-+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-------------~a~iPge 462 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-------------SALIPGE 462 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-------------hhccCcc
Confidence 4689999999999999999999999999999999997 578999988743221 1345543
Q ss_pred CC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc--cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 176 AA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 176 ~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~--~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
.. -|...|+.|.+.-- . .+. ..+.++|.++|+.+ +..+.+++||-|||.|+.||+++.. .|
T Consensus 463 ~Ep~f~~~tilehl~s~----t-GD~----~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae-------rp 526 (593)
T COG2401 463 YEPEFGEVTILEHLRSK----T-GDL----NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE-------RP 526 (593)
T ss_pred cccccCchhHHHHHhhc----c-Cch----hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc-------CC
Confidence 21 14355777766321 1 111 12457899999975 5677889999999999999999986 69
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 253 ~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
.+++.||-.|.||+.+...+..-|.+++++-+ .|++++||+.+....+
T Consensus 527 n~~~iDEF~AhLD~~TA~rVArkiselaRe~g---------iTlivvThrpEv~~AL 574 (593)
T COG2401 527 NVLLIDEFAAHLDELTAVRVARKISELAREAG---------ITLIVVTHRPEVGNAL 574 (593)
T ss_pred CcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC---------CeEEEEecCHHHHhcc
Confidence 99999999999999999999999999987742 7999999999888776
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.8e-20 Score=180.06 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=61.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHH
Q 016804 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (382)
Q Consensus 226 ~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~ 305 (382)
.|||||+||++||++++.-. ..+|+++|+||||++||+..+..+.+.|+++.+ + .|+|++||+++.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~---~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~ 235 (276)
T cd03241 170 IASGGELSRLMLALKAILAR---KDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-S----------HQVLCITHLPQV 235 (276)
T ss_pred hcChhHHHHHHHHHHHHHhc---CCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEechHHH
Confidence 39999999999999765300 015999999999999999999999999999865 3 499999999985
Q ss_pred HHHhhchh
Q 016804 306 IRRAVDRL 313 (382)
Q Consensus 306 ~~~~aDrv 313 (382)
..+||++
T Consensus 236 -~~~~d~~ 242 (276)
T cd03241 236 -AAMADNH 242 (276)
T ss_pred -HHhcCcE
Confidence 4688877
No 405
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.3e-21 Score=196.42 Aligned_cols=203 Identities=25% Similarity=0.383 Sum_probs=148.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEECCCCCChh-h----
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDE-E---- 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--~~p~sG~I~i~G~~i~~~~~~~-~---- 163 (382)
-|.++|.+.+-.++..+.+.||.|-.|..+|||||||-||||||+.|+.- --|..=.|+++-+.+....... .
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 48999999999889999999999999999999999999999999999853 3344455666666543211100 0
Q ss_pred hccceEEEEecCCCC-----CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAAL-----FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l-----~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaI 237 (382)
....+..++-....| -...|+.|-+.-.+...+.......+.+++.+|.-+|++ +.-+++...+|||.|.||+|
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 000112222211111 123466665544332222222233345677888889997 56677888999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
||||.. +|-+|+|||||++||..+...+-..|+-|. +|+++||||..++...|..|
T Consensus 424 ARALfl-------EPTLLMLDEPTNHLDLNAVIWLdNYLQgWk-------------KTLLIVSHDQgFLD~VCtdI 479 (807)
T KOG0066|consen 424 ARALFL-------EPTLLMLDEPTNHLDLNAVIWLDNYLQGWK-------------KTLLIVSHDQGFLDSVCTDI 479 (807)
T ss_pred HHHHhc-------CceeeeecCCccccccceeeehhhHHhhhh-------------heeEEEecccchHHHHHHHH
Confidence 999984 799999999999999999999999998875 38999999999999999988
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.83 E-value=9.1e-21 Score=178.46 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=104.4
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE-EEecCCCCCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFD 180 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig-~V~Q~~~l~~ 180 (382)
+...+.+|+++++++|++++|.||||+|||||+++|+-. .-.. ++| |||.+...++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------------------~~la--~~g~~vpa~~~~~~ 71 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------------------VLMA--QIGCFVPCDSADIP 71 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------------------HHHH--HhCCCcCcccEEEe
Confidence 345689999999999999999999999999999999811 0011 345 5665543222
Q ss_pred CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH--hcCCCCCCCCCcEEEEe
Q 016804 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI--IFDNTKESVEPEVLLYD 258 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL--~~~~~~~a~~P~iLLLD 258 (382)
+ +++++..+++.+.. ...+|.||+|++.+++++ +. +|+++|||
T Consensus 72 ---~----------------------~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~-------~~sLvLLD 116 (222)
T cd03285 72 ---I----------------------VDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSAT-------ENSLIIID 116 (222)
T ss_pred ---c----------------------cceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCC-------CCeEEEEe
Confidence 1 12234455665432 568999999999999999 54 69999999
Q ss_pred CC---CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 259 EP---TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 259 EP---tagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|| |++||+.+... ..++.+.++ + .++|++||+ .++.++||++
T Consensus 117 Ep~~gT~~lD~~~~~~--~il~~l~~~~~----------~~vlisTH~-~el~~~~~~~ 162 (222)
T cd03285 117 ELGRGTSTYDGFGLAW--AIAEYIATQIK----------CFCLFATHF-HELTALADEV 162 (222)
T ss_pred cCcCCCChHHHHHHHH--HHHHHHHhcCC----------CeEEEEech-HHHHHHhhcC
Confidence 99 99999988853 344555543 3 489999995 7778899988
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.83 E-value=4.1e-20 Score=165.24 Aligned_cols=138 Identities=30% Similarity=0.391 Sum_probs=98.8
Q ss_pred EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE-EEecCCCCCCCCCHHH
Q 016804 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDSLTVRE 186 (382)
Q Consensus 108 ~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig-~V~Q~~~l~~~lTV~e 186 (382)
...++.+.++.++.|+|||||||||+++.+....-..+|.+.... +. +.| ++++...-|
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~------------~~g~~~~~~~~~~------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV------------KAGCIVAAVSAEL------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc------------cCCCcceeeEEEE-------
Confidence 444555566679999999999999999998877666655554411 10 011 111111101
Q ss_pred HHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCH
Q 016804 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (382)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~ 266 (382)
+ +. . .+||+||+||++||++|.... ..+|+++|+|||++|+|+
T Consensus 72 -i-~~-------~-------------------------~~lS~G~~~~~~la~~L~~~~---~~~~~llllDEp~~gld~ 114 (162)
T cd03227 72 -I-FT-------R-------------------------LQLSGGEKELSALALILALAS---LKPRPLYILDEIDRGLDP 114 (162)
T ss_pred -e-hh-------e-------------------------eeccccHHHHHHHHHHHHhcC---CCCCCEEEEeCCCCCCCH
Confidence 0 00 0 019999999999999998520 015899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 267 ~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
..+..+.+.+.++.+++ .++|++||+.+.+. .+|++
T Consensus 115 ~~~~~l~~~l~~~~~~~----------~~vii~TH~~~~~~-~~d~~ 150 (162)
T cd03227 115 RDGQALAEAILEHLVKG----------AQVIVITHLPELAE-LADKL 150 (162)
T ss_pred HHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHH-hhhhE
Confidence 99999999999986654 59999999999876 57887
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.82 E-value=1.2e-19 Score=208.92 Aligned_cols=146 Identities=18% Similarity=0.224 Sum_probs=111.1
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP 260 (382)
|||.|-+.|.. ....+.+ ..+.|..+||.- .+.+...+|||||.||+-||.-|.+. ...+.+++||||
T Consensus 1661 mtv~ea~~~F~------~~~~i~~-~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~----~~~~~lyilDEP 1729 (1809)
T PRK00635 1661 TPIEEVAETFP------FLKKIQK-PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLP----PKHPTLFLLDEI 1729 (1809)
T ss_pred CCHHHHHHHhh------ccHHHHH-HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcC----CCCCcEEEEcCC
Confidence 56666665531 1122333 356799999974 57889999999999999999999752 124689999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccc
Q 016804 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFI 340 (382)
Q Consensus 261 tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (382)
|.||++.....++++|++|.+.|+ |||+|.||++.+.. ||+|+=|-++
T Consensus 1730 t~GLh~~d~~~Ll~~l~~L~~~g~----------tvivieH~~~~i~~-aD~iidlgp~--------------------- 1777 (1809)
T PRK00635 1730 ATSLDNQQKSALLVQLRTLVSLGH----------SVIYIDHDPALLKQ-ADYLIEMGPG--------------------- 1777 (1809)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCC----------eEEEEeCCHHHHHh-CCEEEEcCCC---------------------
Confidence 999999999999999999998873 99999999999986 8876211111
Q ss_pred cEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 341 YRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 341 ~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
-=-+.|+|+++|+|+++....+.++..+++
T Consensus 1778 ---gG~~GG~iva~Gtp~~i~~~~~S~t~~~l~ 1807 (1809)
T PRK00635 1778 ---SGKTGGKILFSGPPKDISASKDSLLKTYMC 1807 (1809)
T ss_pred ---cccCCCEEEEEeCHHHHhhCCCCcHHHHhc
Confidence 012458999999999987666667766654
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.82 E-value=5.8e-20 Score=202.97 Aligned_cols=135 Identities=28% Similarity=0.440 Sum_probs=110.8
Q ss_pred CCCCCHHHHHHhhHhhcCCCCH----------HHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 179 FDSLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+..+||.|.+.|.- .. ..++ .++.++++ +|+.+||..+ +++.+.+|||||+|||+||+||+.+
T Consensus 434 ~~~~~v~~~~~~~~-~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~--- 507 (943)
T PRK00349 434 VSELSIGEALEFFE-NL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSG--- 507 (943)
T ss_pred HhcCcHHHHHHHHH-hc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhC---
Confidence 34689999998832 21 1222 13445553 7889999876 7999999999999999999999863
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
.+|+++||||||+|||+.....+.++|++|+++| .|||+|+||++++. .||||
T Consensus 508 --~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G----------~TVIvVeH~~~~i~-~aD~v-------------- 560 (943)
T PRK00349 508 --LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLG----------NTLIVVEHDEDTIR-AADYI-------------- 560 (943)
T ss_pred --CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEE--------------
Confidence 1249999999999999999999999999998776 49999999999986 58877
Q ss_pred hccCCCCcccccccEEEEE------eCCeEEEEeccccccc
Q 016804 328 LGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTS 362 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~ 362 (382)
++| ++|+|+++|++.++..
T Consensus 561 ----------------i~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 561 ----------------VDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred ----------------EEeccccCCCCCEEeeccCHHHHhc
Confidence 899 8999999998888754
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.81 E-value=6.3e-20 Score=169.39 Aligned_cols=140 Identities=18% Similarity=0.178 Sum_probs=90.0
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~ 185 (382)
.-..|+++.+|++++|+|||||||||||++|++.. .+..|..... ...++++..|....+ +..
T Consensus 19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-------------~~~~i~~~dqi~~~~---~~~ 82 (202)
T cd03243 19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-------------ESASIPLVDRIFTRI---GAE 82 (202)
T ss_pred eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-------------cccccCCcCEEEEEe---cCc
Confidence 34456666789999999999999999999999543 2222321110 011244433221111 111
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
+ ......+.+|.+++| +..+.+++. +|+++|+||||+|+|
T Consensus 83 d--------------------------------~i~~~~s~~~~e~~~-l~~i~~~~~-------~~~llllDEp~~gld 122 (202)
T cd03243 83 D--------------------------------SISDGRSTFMAELLE-LKEILSLAT-------PRSLVLIDELGRGTS 122 (202)
T ss_pred c--------------------------------cccCCceeHHHHHHH-HHHHHHhcc-------CCeEEEEecCCCCCC
Confidence 1 122233456777776 444455554 699999999999999
Q ss_pred HHHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 266 PIASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 266 ~~~~~~l~~-lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+..+..+.. +++.+.+.+ .++|++||+.+.+. .++++
T Consensus 123 ~~~~~~l~~~ll~~l~~~~----------~~vi~~tH~~~~~~-~~~~~ 160 (202)
T cd03243 123 TAEGLAIAYAVLEHLLEKG----------CRTLFATHFHELAD-LPEQV 160 (202)
T ss_pred HHHHHHHHHHHHHHHHhcC----------CeEEEECChHHHHH-HhhcC
Confidence 998887754 567676655 58999999987765 56666
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=4.8e-19 Score=188.54 Aligned_cols=123 Identities=26% Similarity=0.364 Sum_probs=102.8
Q ss_pred HHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 016804 207 VKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGEN 285 (382)
Q Consensus 207 v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~ 285 (382)
..+.|..+||.- .+-++..+|||||.|||-||.-|.+. +...-++||||||.||-....+.+++.|.+|..+|.
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~----~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~Gn- 876 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKR----STGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGN- 876 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhc----cCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC-
Confidence 345688899973 56888999999999999999999864 345689999999999999999999999999999874
Q ss_pred CCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecccc
Q 016804 286 GLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHE 359 (382)
Q Consensus 286 ~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~ 359 (382)
|||+|.|+|+.+. .||.| |-| +.|+|+++|+|++
T Consensus 877 ---------TViVIEHNLdVIk-~AD~I------------------------------IDLGPeGG~~GG~iva~GTPee 916 (935)
T COG0178 877 ---------TVIVIEHNLDVIK-TADWI------------------------------IDLGPEGGDGGGEIVASGTPEE 916 (935)
T ss_pred ---------EEEEEecccceEe-ecCEE------------------------------EEcCCCCCCCCceEEEecCHHH
Confidence 9999999999987 47755 543 4589999999999
Q ss_pred cccCCCHHHHHHHcC
Q 016804 360 FTSSSNPIVQQFASG 374 (382)
Q Consensus 360 ~~~~~~~~~~~~~~~ 374 (382)
+......++.+|+..
T Consensus 917 va~~~~S~Tg~yLk~ 931 (935)
T COG0178 917 VAKVKASYTGKYLKK 931 (935)
T ss_pred HHhCccchhHHHHHH
Confidence 875556666666654
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=2.8e-19 Score=166.44 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=108.0
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~ 181 (382)
.+..+.+|++|++++|++++|+||||+||||++++|+++. + .. ++|+-. |..+..
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------~--------la--~~G~~v--pa~~~~ 68 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA-------------I--------MA--QIGCFV--PAEYAT 68 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH-------------H--------HH--HcCCCc--chhhcC
Confidence 3467999999999999999999999999999999999884 0 11 233211 445556
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
+++.|+|... ++..+..++..+++|+|++|+. .+.+++. +|+++|+|||+
T Consensus 69 l~~~d~I~~~----------------------~~~~d~~~~~~S~fs~e~~~~~-~il~~~~-------~~~lvllDE~~ 118 (204)
T cd03282 69 LPIFNRLLSR----------------------LSNDDSMERNLSTFASEMSETA-YILDYAD-------GDSLVLIDELG 118 (204)
T ss_pred ccChhheeEe----------------------cCCccccchhhhHHHHHHHHHH-HHHHhcC-------CCcEEEecccc
Confidence 6777777331 2233344566788999999764 4444554 69999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 262 AGLDPIASTVV-EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 262 agLD~~~~~~l-~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
+|+|+.....+ ..+++.+.+.+ .++|++||+.+.+...++
T Consensus 119 ~gt~~~~~~~l~~~il~~l~~~~----------~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 119 RGTSSADGFAISLAILECLIKKE----------STVFFATHFRDIAAILGN 159 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECChHHHHHHhhc
Confidence 99999775554 55677777665 599999999999887654
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=2.8e-19 Score=197.29 Aligned_cols=133 Identities=29% Similarity=0.419 Sum_probs=106.6
Q ss_pred CCCHHHHHHhhHhhcCCCCH----------HHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 181 SLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
.|||.|.+.|..... ... .++.+++ +.+..+||..+ +++.+.+|||||+|||+||+||+.+
T Consensus 434 ~~~v~~~~~~~~~l~--~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~----- 505 (924)
T TIGR00630 434 ELSIREAHEFFNQLD--LTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSG----- 505 (924)
T ss_pred cCCHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhC-----
Confidence 578888877753211 111 1222332 34778899765 7999999999999999999999963
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
..|+++||||||+|||+.....+.++|++++++| .|||+|+||++++. .|||+
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G----------~TVIvVeHd~~~i~-~aD~v---------------- 558 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLG----------NTVIVVEHDEETIR-AADYV---------------- 558 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHh-hCCEE----------------
Confidence 2258999999999999999999999999998876 49999999999986 78877
Q ss_pred cCCCCcccccccEEEEE------eCCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~ 362 (382)
++| ++|+|+++|++.++..
T Consensus 559 --------------i~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 559 --------------IDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred --------------EEecccccCCCCEEeeccCHHHHhc
Confidence 899 8999999998888743
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.4e-18 Score=166.04 Aligned_cols=73 Identities=25% Similarity=0.131 Sum_probs=55.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcc
Q 016804 224 PSELSGGMKKRVALARSIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~--~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTH 301 (382)
...||+||||+++|||+|+.-. ..-..+|+++|+||||++||+..+..+.+.|+++. .+++++|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~--------------q~ii~~~ 246 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV--------------QTFVTTT 246 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC--------------CEEEEeC
Confidence 3568999999999999985100 00002699999999999999999999998887652 3567777
Q ss_pred CHHHHHHhh
Q 016804 302 QHSTIRRAV 310 (382)
Q Consensus 302 dl~~~~~~a 310 (382)
+...+..+|
T Consensus 247 ~~~~~~~~~ 255 (270)
T cd03242 247 DLADFDALW 255 (270)
T ss_pred Cchhccchh
Confidence 777777776
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.75 E-value=5.8e-18 Score=158.76 Aligned_cols=142 Identities=24% Similarity=0.286 Sum_probs=96.2
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
.+.+.++++|+.++ ++++|+||||||||||||+|+++.-. |+ .|..+. . ...+++++.| +|+.+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp----~---~~~~i~~~~~---i~~~~ 80 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP----A---SKAEIGVVDR---IFTRI 80 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec----c---ccceecceee---EeccC
Confidence 45689999999887 99999999999999999999875422 11 121111 1 1225788865 56778
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC--
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP-- 260 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP-- 260 (382)
++.||+..+. |.=+..++.|++++.+ +.+|+++|||||
T Consensus 81 ~~~~~ls~g~-----------------------------------s~f~~e~~~l~~~l~~-----~~~~~llllDEp~~ 120 (216)
T cd03284 81 GASDDLAGGR-----------------------------------STFMVEMVETANILNN-----ATERSLVLLDEIGR 120 (216)
T ss_pred CchhhhccCc-----------------------------------chHHHHHHHHHHHHHh-----CCCCeEEEEecCCC
Confidence 8888886531 2223333444444432 137999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 261 -TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 261 -tagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+++|.... ...+++.+.+. + .++|++||+. ++.+++|++
T Consensus 121 gt~~lD~~~~--~~~il~~l~~~~~----------~~vi~~TH~~-~l~~l~~~~ 162 (216)
T cd03284 121 GTSTYDGLSI--AWAIVEYLHEKIG----------AKTLFATHYH-ELTELEGKL 162 (216)
T ss_pred CCChHHHHHH--HHHHHHHHHhccC----------CcEEEEeCcH-HHHHHhhcC
Confidence 888888652 34455556554 4 4899999996 456688876
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.74 E-value=1e-17 Score=168.29 Aligned_cols=180 Identities=27% Similarity=0.380 Sum_probs=140.5
Q ss_pred EEeCC-eeeeEeeeEEEeCCc-----EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEE
Q 016804 99 KSFGE-KHILRGVSFKIRHGE-----AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (382)
Q Consensus 99 ~~yg~-~~iL~~vsl~i~~Ge-----~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V 172 (382)
++|++ +.-+.+..|.|..|+ ++..+|.||.||||++++++|.++|++|. ++. ...|+|=
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p---------~lnVSyk 407 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP---------VLNVSYK 407 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc---------ccceecc
Confidence 34543 567889999999885 68999999999999999999999999761 121 2258888
Q ss_pred ecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
||...--..-||++-+.--.+. .-+. .+.+.+.++-+.+++..++-+.+|||||+|||+||.+|-+ .+
T Consensus 408 pqkispK~~~tvR~ll~~kIr~-ay~~----pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGK-------pA 475 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRD-AYMH----PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGK-------PA 475 (592)
T ss_pred ccccCccccchHHHHHHHHhHh-hhcC----HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCC-------CC
Confidence 8876543345888876432210 0022 2345677888888889999999999999999999999987 49
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 253 ~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
++.+.|||.+-||.+.+..--..++++--..+ +|-.+|.||.-.+-..+|||+
T Consensus 476 dvYliDEpsAylDSeQRi~AskvikRfilhak---------ktafvVEhdfImaTYladrvi 528 (592)
T KOG0063|consen 476 DVYLIDEPSAYLDSEQRIIASKVIKRFILHAK---------KTAFVVEHDFIMATYLADRVI 528 (592)
T ss_pred ceEEecCchhhcChHHHHHHHHHHHHHHHhcc---------chhhhhhhHHHHHHhhcceeE
Confidence 99999999999999999988888888743221 489999999998888999883
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.72 E-value=2.6e-17 Score=159.42 Aligned_cols=157 Identities=25% Similarity=0.277 Sum_probs=106.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK 197 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~ 197 (382)
.-++|+||||||||||+++|+|+++|++|+|.++|+++.......+.. ..+++++|+. +++.++|.+|..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~-~~~~~~~q~~-~~~r~~v~~~~~k------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIA-GCVNGVPQHD-VGIRTDVLDGCPK------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHH-HHhccccccc-ccccccccccchH-------
Confidence 578999999999999999999999999999999999986432222332 2478888854 5556777666311
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 016804 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277 (382)
Q Consensus 198 ~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~ 277 (382)
. . |+ .+++|++ +|+++|+|||++ .+.+..+++
T Consensus 183 ---~------~---------------------~~---~~~i~~~---------~P~villDE~~~------~e~~~~l~~ 214 (270)
T TIGR02858 183 ---A------E---------------------GM---MMLIRSM---------SPDVIVVDEIGR------EEDVEALLE 214 (270)
T ss_pred ---H------H---------------------HH---HHHHHhC---------CCCEEEEeCCCc------HHHHHHHHH
Confidence 0 0 00 3444443 699999999974 344555666
Q ss_pred HHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecc
Q 016804 278 SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMT 357 (382)
Q Consensus 278 ~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~ 357 (382)
.+. .| .++|++||+.+. ..+++|=.+ +.=++..+.+|+++|++|+ ..|.+
T Consensus 215 ~~~-~G----------~~vI~ttH~~~~-~~~~~r~~~----------------~~l~~~~~~~r~i~L~~~~--~~g~~ 264 (270)
T TIGR02858 215 ALH-AG----------VSIIATAHGRDV-EDLYKRPVF----------------KELIENEAFERYVVLSRRK--GPGTV 264 (270)
T ss_pred HHh-CC----------CEEEEEechhHH-HHHHhChHH----------------HHHHhcCceEEEEEEecCC--CCCce
Confidence 654 45 599999998644 344443200 1123446678999999887 66766
Q ss_pred cccc
Q 016804 358 HEFT 361 (382)
Q Consensus 358 ~~~~ 361 (382)
.++.
T Consensus 265 ~~i~ 268 (270)
T TIGR02858 265 EAVY 268 (270)
T ss_pred eecc
Confidence 6654
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.66 E-value=1.4e-16 Score=145.50 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=59.4
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCC
Q 016804 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPGN 292 (382)
Q Consensus 215 gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l-~~lL~~l~~~-g~~~~~~~~~ 292 (382)
++.+..++..+++|+|++|...+++.. .+|+++|+|||++|+|+.....+ ..+++.+.++ +
T Consensus 50 ~~~d~~~~~~s~fs~~~~~l~~~l~~~--------~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~--------- 112 (185)
T smart00534 50 GASDSLAQGLSTFMVEMKETANILKNA--------TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIG--------- 112 (185)
T ss_pred CCCCchhccccHHHHHHHHHHHHHHhC--------CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC---------
Confidence 344455667889999988854444432 26999999999999999977776 4667777664 4
Q ss_pred ceEEEEEccCHHHHHHhhchh
Q 016804 293 IASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 293 ~~tiIivTHdl~~~~~~aDrv 313 (382)
.++|++||+++ +.+++|+-
T Consensus 113 -~~iii~TH~~~-l~~~~~~~ 131 (185)
T smart00534 113 -ALTLFATHYHE-LTKLADEH 131 (185)
T ss_pred -CeEEEEecHHH-HHHHhhcC
Confidence 48999999995 56677753
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=2.3e-15 Score=140.85 Aligned_cols=141 Identities=22% Similarity=0.224 Sum_probs=95.2
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCC-CC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA--GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF-DS 181 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~--Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~-~~ 181 (382)
.+-.|++++=..+.+++|.||||+|||||||.|+ +++ +..|...... ..+++|..|...-+ ..
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------------~~~~~~~d~i~~~l~~~ 82 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------------SATIGLVDKIFTRMSSR 82 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------------CcEEeeeeeeeeeeCCc
Confidence 3445555532223789999999999999999998 434 5667665432 11578887764322 12
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
.++.+++ + .+ .-+.||+++|++++. +|+++|+|||+
T Consensus 83 ~si~~~~----------------------------S--------~f-~~el~~l~~~l~~~~-------~~slvllDE~~ 118 (213)
T cd03281 83 ESVSSGQ----------------------------S--------AF-MIDLYQVSKALRLAT-------RRSLVLIDEFG 118 (213)
T ss_pred cChhhcc----------------------------c--------hH-HHHHHHHHHHHHhCC-------CCcEEEecccc
Confidence 2222221 1 11 345689999999986 69999999999
Q ss_pred CCCCHHHH-HHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 262 AGLDPIAS-TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 262 agLD~~~~-~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
+|+|+... ..+..+++++.+.+. +..++|++||+++.+....
T Consensus 119 ~gtd~~~~~~~~~ail~~l~~~~~-------~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 119 KGTDTEDGAGLLIATIEHLLKRGP-------ECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCC-------CCcEEEEEcChHHHHHhhh
Confidence 99999764 444678888876421 0037999999999988763
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.61 E-value=2.8e-16 Score=145.99 Aligned_cols=180 Identities=24% Similarity=0.338 Sum_probs=98.2
Q ss_pred EeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC--CCCccEEEECCEECCCCCCh----hhhccceEEEEecCCCCC-
Q 016804 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLL--APDKGEVYIRGRKRAGLISD----EEISGLRIGLVFQSAALF- 179 (382)
Q Consensus 108 ~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~-Gl~--~p~sG~I~i~G~~i~~~~~~----~~~~~~~Ig~V~Q~~~l~- 179 (382)
+...+.+.+ .++.|+|||||||||++.+|. .|- +..+.+ +.....+... .......|...+++..-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r----~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR----GSKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccc----ccccccccccccccccccccccccccccccccc
Confidence 455556644 599999999999999999993 343 111111 1111111110 011111366666654321
Q ss_pred ---CC-CCHHHHHHh-hHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcE
Q 016804 180 ---DS-LTVRENVGF-LLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254 (382)
Q Consensus 180 ---~~-lTV~eni~~-~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~i 254 (382)
.. ..+...+.- ....+.--......+.+.+.+..+.+... .||||||.+++||--|+.. ...+.++
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~---~~~~~p~ 161 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQ---RYKPSPF 161 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHH---TCS--SE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccc---ccccccc
Confidence 00 000000000 00000000011112345556666665432 9999999999999776431 1347899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 255 LLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|||||.++||...+..+.++|+++.++ .-+|++||+-.... .||+.
T Consensus 162 ~ilDEvd~~LD~~~~~~l~~~l~~~~~~-----------~Q~ii~Th~~~~~~-~a~~~ 208 (220)
T PF02463_consen 162 LILDEVDAALDEQNRKRLADLLKELSKQ-----------SQFIITTHNPEMFE-DADKL 208 (220)
T ss_dssp EEEESTTTTS-HHHHHHHHHHHHHHTTT-----------SEEEEE-S-HHHHT-T-SEE
T ss_pred cccccccccccccccccccccccccccc-----------cccccccccccccc-ccccc
Confidence 9999999999999999999999998654 37999999976654 56766
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.61 E-value=1e-15 Score=166.94 Aligned_cols=152 Identities=21% Similarity=0.265 Sum_probs=103.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCC-cEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHG-EAVGIIGPSGTGKSTILKIIAGL-LAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~G-e~vaLiGpNGaGKSTLLklI~Gl-~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.+.++++..-+-...-.-.+|+++..+ ++++|.||||+|||||||+|+|+ +.+..|-
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------------- 353 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------------- 353 (771)
T ss_pred CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------------
Confidence 477777665332111123478889887 99999999999999999999987 3333331
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
+||..... .+.+++++.. .... .+......+++|+||+|++.|++++-
T Consensus 354 --~Vpa~~~~--~~~~~d~i~~------~i~~----------------~~si~~~LStfS~~m~~~~~il~~~~------ 401 (771)
T TIGR01069 354 --PIPANEHS--EIPYFEEIFA------DIGD----------------EQSIEQNLSTFSGHMKNISAILSKTT------ 401 (771)
T ss_pred --CccCCccc--cccchhheee------ecCh----------------HhHHhhhhhHHHHHHHHHHHHHHhcC------
Confidence 33333210 0111222210 0111 11123346789999999999998873
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l-~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+|.++|+|||++|+|+.....+ ..++..+.+.+ .++|++||+.+...
T Consensus 402 --~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g----------~~viitTH~~eL~~ 449 (771)
T TIGR01069 402 --ENSLVLFDELGAGTDPDEGSALAISILEYLLKQN----------AQVLITTHYKELKA 449 (771)
T ss_pred --CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECChHHHHH
Confidence 5999999999999999999988 57788887765 58999999987644
No 422
>PRK00064 recF recombination protein F; Reviewed
Probab=99.58 E-value=6.2e-14 Score=141.00 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=57.5
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 225 SELSGGMKKRVALARSIIFD--NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~--~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
..+|.||||+++||++|+.- ......+|+|||||||+++||+..+..+.+.+.++ + ..++++||+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~----------~qv~it~~~ 338 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---G----------AQVFITTTD 338 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---C----------CEEEEEcCC
Confidence 58999999999999998610 00000269999999999999999999999888764 2 268999999
Q ss_pred HHHHHHhhc
Q 016804 303 HSTIRRAVD 311 (382)
Q Consensus 303 l~~~~~~aD 311 (382)
.+.+...++
T Consensus 339 ~~~~~~~~~ 347 (361)
T PRK00064 339 LEDLADLLE 347 (361)
T ss_pred hhhhhhhhc
Confidence 887766543
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.57 E-value=2.9e-15 Score=126.14 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=63.2
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
..+|++++|++++||+++|+||||||||||++++. +|++.++|.++..+.. .. ....+++++|+ +|+ .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~-~~-~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIRE-DS-KDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhh-hh-cCCEEEEechh--cch-hh
Confidence 57899999999999999999999999999999986 8999999998765422 21 22247788887 665 59
Q ss_pred HHHHHHhh
Q 016804 184 VRENVGFL 191 (382)
Q Consensus 184 V~eni~~~ 191 (382)
++|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999874
No 424
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.55 E-value=6.2e-15 Score=136.53 Aligned_cols=149 Identities=23% Similarity=0.300 Sum_probs=88.6
Q ss_pred EEEEEcCCCccHHHHH-HHHHcCCCC-----------------CccEEEECCEECCCCCChhhhccceEEEEecCCC---
Q 016804 119 AVGIIGPSGTGKSTIL-KIIAGLLAP-----------------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA--- 177 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLL-klI~Gl~~p-----------------~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~--- 177 (382)
.++|+|+||||||||+ +++.|..++ +.|.+.+.+.|..+.... ...+.+|+.+...
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~---~~~~~~~~~~~~~~i~ 87 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF---GGLRDGYYIKGQCAII 87 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhh---hhhhHHHhccCCEEEE
Confidence 4899999999999999 689998764 568888888876532111 1111122222211
Q ss_pred CCCCCC---HHHHHHhh--------------HhhcC-CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChH--HHHHHHH
Q 016804 178 LFDSLT---VRENVGFL--------------LYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGG--MKKRVAL 237 (382)
Q Consensus 178 l~~~lT---V~eni~~~--------------~~~~~-~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGG--qrQRVaI 237 (382)
.|+ .| -.+++... +..++ .....+......+.++..++. +. ..+.+||+ |++++.|
T Consensus 88 v~d-~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 88 MFD-VTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ-YY--DISAKSNYNFEKPFLWL 163 (215)
T ss_pred EEE-CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE-EE--EEeCCCCCCHHHHHHHH
Confidence 011 11 11111100 00011 011111111112334444432 11 23445555 8999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPT-----AGLDPIASTVVEDLIRSVHK 281 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPt-----agLD~~~~~~l~~lL~~l~~ 281 (382)
||+++. +|+++++|||| ++||+..++.+.+.++++++
T Consensus 164 a~~l~~-------~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 164 ARRLTN-------DPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHhh-------cccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999997 69999999999 99999999999999999864
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.50 E-value=1.2e-14 Score=146.48 Aligned_cols=175 Identities=27% Similarity=0.345 Sum_probs=122.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE--CCEECCCCCChhhhcc---------ce----EEEEecCCCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI--RGRKRAGLISDEEISG---------LR----IGLVFQSAAL 178 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i--~G~~i~~~~~~~~~~~---------~~----Ig~V~Q~~~l 178 (382)
-++|++.++||-||-||||-+++++|-.+|.-|.-.- +++++-......++.. .+ .-||.|-|..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 3579999999999999999999999999998664321 1111110000000000 00 0111111111
Q ss_pred CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe
Q 016804 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD 258 (382)
.. .+|.+++.- ...++...++++.+.|....+|-..+|||||-||.+||.+.++ +.++.++|
T Consensus 177 ~k-~~v~~~l~~----------~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq-------~advyMFD 238 (592)
T KOG0063|consen 177 VK-GTVGSLLDR----------KDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQ-------KADVYMFD 238 (592)
T ss_pred HH-HHHHHHHHH----------HhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhh-------hcceeEec
Confidence 10 122222211 1112234567888889989999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 259 EPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
||.+.||...+..--..|++|.... .=+|+|.||++....++|-+|.+
T Consensus 239 EpSsYLDVKQRLkaA~~IRsl~~p~----------~YiIVVEHDLsVLDylSDFiCcL 286 (592)
T KOG0063|consen 239 EPSSYLDVKQRLKAAITIRSLINPD----------RYIIVVEHDLSVLDYLSDFICCL 286 (592)
T ss_pred CCcccchHHHhhhHHHHHHHhhCCC----------CeEEEEEeechHHHhhhcceeEE
Confidence 9999999999999999999997654 36999999999999999988665
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.48 E-value=4.4e-13 Score=126.57 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=91.3
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G-l~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~ 181 (382)
...+.+|++|++.+|++++|.||||+||||++++|++ .+.++.|...+... .+++|..|= |..
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-------------~~~~~~~~i---~~~ 80 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-------------ATLSIFDSV---LTR 80 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-------------eEEeccceE---EEE
Confidence 3568999999999999999999999999999999999 67788888665421 124443331 111
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
+...|++.- .+|-=+..-..+++.+-. +.++.++|+|||.
T Consensus 81 ~~~~d~~~~-----------------------------------~~StF~~e~~~~~~il~~-----~~~~sLvllDE~~ 120 (222)
T cd03287 81 MGASDSIQH-----------------------------------GMSTFMVELSETSHILSN-----CTSRSLVILDELG 120 (222)
T ss_pred ecCcccccc-----------------------------------ccchHHHHHHHHHHHHHh-----CCCCeEEEEccCC
Confidence 111222211 111111111112222211 1269999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHH
Q 016804 262 AGLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 262 agLD~~~~~~l-~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+|.|+.....+ ..+++.+.+. + .++|++||+.+...
T Consensus 121 ~gT~~~d~~~i~~~il~~l~~~~~----------~~~i~~TH~~~l~~ 158 (222)
T cd03287 121 RGTSTHDGIAIAYATLHYLLEEKK----------CLVLFVTHYPSLGE 158 (222)
T ss_pred CCCChhhHHHHHHHHHHHHHhccC----------CeEEEEcccHHHHH
Confidence 99987766664 5677777765 4 58999999998764
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.46 E-value=1.3e-12 Score=134.47 Aligned_cols=186 Identities=18% Similarity=0.255 Sum_probs=117.6
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC---C---hhhhccceEEEEecCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI---S---DEEISGLRIGLVFQSA 176 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~---~---~~~~~~~~Ig~V~Q~~ 176 (382)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++-.... . .....++.|.++.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 35689999 999999999999999999999999999999999999999665432111 0 0011123588887642
Q ss_pred CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCCh-HHHHHHHHHHHHhcCCCCCCCCCcEE
Q 016804 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG-GMKKRVALARSIIFDNTKESVEPEVL 255 (382)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSG-GqrQRVaIArAL~~~~~~~a~~P~iL 255 (382)
. ++.+-+.-+.. .-.+.|++..-|-+-+. ...+|+- -|-|| .|+-++ .+|+
T Consensus 224 ~-----~~~~r~~~~~~----------a~~iAEyfr~~g~~Vll--~~Dsltr~A~A~r-Eisl~~--------ge~P-- 275 (438)
T PRK07721 224 Q-----PALMRIKGAYT----------ATAIAEYFRDQGLNVML--MMDSVTRVAMAQR-EIGLAV--------GEPP-- 275 (438)
T ss_pred C-----CHHHHHHHHHH----------HHHHHHHHHHCCCcEEE--EEeChHHHHHHHH-HHHHhc--------CCCC--
Confidence 1 22222221110 01123344433432110 1123321 11111 111111 1344
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-CCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCC
Q 016804 256 LYDEPTAGLDPIASTVVEDLIRSVHK--KGE-NGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVA 332 (382)
Q Consensus 256 LLDEPtagLD~~~~~~l~~lL~~l~~--~g~-~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~ 332 (382)
.|+|+||.....+.++++++.. +|. |.+ .||++.+||+++ .+||++
T Consensus 276 ----~~~G~dp~~~~~l~~ller~~~~~~GsIT~~------~TVlv~~hdm~e--~i~d~v------------------- 324 (438)
T PRK07721 276 ----TTKGYTPSVFAILPKLLERTGTNASGSITAF------YTVLVDGDDMNE--PIADTV------------------- 324 (438)
T ss_pred ----ccccCCHHHHHHHHHHHHHhcCCCCCCeeeE------EEEEEECCCCCc--hhhhhE-------------------
Confidence 5899999999999999999874 220 000 289999999995 788888
Q ss_pred CCcccccccEEEEEeCCeEEEEecccc
Q 016804 333 PDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 333 ~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
..+.+|+|+.++...+
T Consensus 325 -----------~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 325 -----------RGILDGHFVLDRQLAN 340 (438)
T ss_pred -----------EEecCEEEEEeccHHH
Confidence 8999999999887654
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.44 E-value=2.6e-13 Score=130.16 Aligned_cols=178 Identities=17% Similarity=0.125 Sum_probs=103.6
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEECCCCCChhhhc-cceEEEEecCCCCCCCCCHHHHH
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRKRAGLISDEEIS-GLRIGLVFQSAALFDSLTVRENV 188 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG--~I~i~G~~i~~~~~~~~~~-~~~Ig~V~Q~~~l~~~lTV~eni 188 (382)
+.+.+||.++|+||+|+|||||++.|++......+ .+++....-... ...+.. ...-.+|...... +....+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~-ev~el~~~I~~~~v~~~~~~----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPE-EVTDMQRSVKGEVIASTFDE----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCc-cHHHHHHHhccEEEEecCCC----CHHHHH
Confidence 47889999999999999999999999999877643 323221110000 111111 1111122222111 112221
Q ss_pred Hhh-------Hhh-cCCCC----HHHHHHHHHHHHHHcCCcccccCCCCCCChHH--------HHHHHHHHHHhcCCCCC
Q 016804 189 GFL-------LYE-NSKMR----DEQISELVKENLAAVGLKGVEDRLPSELSGGM--------KKRVALARSIIFDNTKE 248 (382)
Q Consensus 189 ~~~-------~~~-~~~~~----~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGq--------rQRVaIArAL~~~~~~~ 248 (382)
... .+. ..+.+ -+++.+ ..+..+.+.. .....+|||+ +||+++||++.+
T Consensus 86 ~~~~~~~~~a~~~~~~G~~vll~iDei~r-~a~a~~ev~~-----~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~----- 154 (249)
T cd01128 86 QVAEMVLEKAKRLVEHGKDVVILLDSITR-LARAYNTVVP-----PSGKILSGGVDANALHKPKRFFGAARNIEE----- 154 (249)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHH-hhhhhhhccc-----cCCCCCCCCcChhhhhhhHHHHHHhcCCCC-----
Confidence 110 000 00100 011111 1122222222 2234579999 999999999876
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTV-VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~-l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+++|.+| ||+.+|..+... +. +.++...+ .|.|++||++.....+
T Consensus 155 --~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~----------~~~ivls~~la~~~~~------------------ 200 (249)
T cd01128 155 --GGSLTII--ATALVDTGSRMDDVI--FEEFKGTG----------NMELVLDRRLAERRIF------------------ 200 (249)
T ss_pred --CCceEEe--eeheecCCCcccchH--HHHHhcCC----------CcEEEEchHHhhCCCC------------------
Confidence 5999999 999999655543 43 55555333 3899999999888765
Q ss_pred hccCCCCcccccccEEEEEeCCeEE
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIV 352 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~ 352 (382)
|.|.+|+.|++.
T Consensus 201 -------------paI~vl~s~sr~ 212 (249)
T cd01128 201 -------------PAIDILKSGTRK 212 (249)
T ss_pred -------------CeEEEcCCCCcc
Confidence 566999999984
No 429
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.42 E-value=3.1e-12 Score=137.19 Aligned_cols=128 Identities=28% Similarity=0.391 Sum_probs=103.7
Q ss_pred HHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCC
Q 016804 211 LAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN 289 (382)
Q Consensus 211 L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~ 289 (382)
|-.+||.- -++|...+|||||.||+.||.-+-.. .--=+++||||+.||-+..-+.+.+.|+.|+..|.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~-----LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGN----- 534 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSG-----LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGN----- 534 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhccc-----ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCC-----
Confidence 44568864 36888999999999999999998542 33567899999999999999999999999998873
Q ss_pred CCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHH
Q 016804 290 PGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQ 369 (382)
Q Consensus 290 ~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~ 369 (382)
|+|+|.||-+.++ .||+|+= ||-- .=.+.|+|+++|++++++...+..+-
T Consensus 535 -----TviVVEHDedti~-~AD~iID------------iGPg------------AG~~GGeIv~~Gtp~~i~~~~~SlTG 584 (935)
T COG0178 535 -----TVIVVEHDEDTIR-AADHIID------------IGPG------------AGEHGGEIVAEGTPEELLANPESLTG 584 (935)
T ss_pred -----eEEEEecCHHHHh-hcCEEEe------------eCCC------------CCcCCCEEEEccCHHHHHhCCcchhh
Confidence 9999999988876 5787710 1100 12467999999999999987788999
Q ss_pred HHHcCCCCC
Q 016804 370 QFASGSLEG 378 (382)
Q Consensus 370 ~~~~~~~~~ 378 (382)
+|++|....
T Consensus 585 ~YLsg~~~i 593 (935)
T COG0178 585 QYLSGKKTI 593 (935)
T ss_pred HhhcCCccc
Confidence 999997654
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.40 E-value=2.1e-12 Score=122.27 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=94.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHH-HHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTI-LKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTL-LklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+.++++.+.+++. +++|+++.|.|||||||||| +++++++.++... +.
T Consensus 8 ~~~~~ld~~l~gg---------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~----------------------~~ 56 (230)
T PRK08533 8 LSRDELHKRLGGG---------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS----------------------VS 56 (230)
T ss_pred EEEeeeehhhCCC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc----------------------EE
Confidence 6677888877652 79999999999999999999 7999988764322 33
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+..+ .+..+.+..... .+++-++ .... +.-...+-.| .+|+++.++-.+++.+-.- ...
T Consensus 57 yi~~e------~~~~~~~~~~~~--~g~~~~~-------~~~~-~~l~~~~~~~-~~~~~~~~~~~l~~il~~~---~~~ 116 (230)
T PRK08533 57 YVSTQ------LTTTEFIKQMMS--LGYDINK-------KLIS-GKLLYIPVYP-LLSGNSEKRKFLKKLMNTR---RFY 116 (230)
T ss_pred EEeCC------CCHHHHHHHHHH--hCCchHH-------Hhhc-CcEEEEEecc-cccChHHHHHHHHHHHHHH---Hhc
Confidence 44311 233333333211 1111111 1111 1111122223 4677776666666554320 013
Q ss_pred CCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHH
Q 016804 251 EPEVLLYDEPTAGL----DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (382)
Q Consensus 251 ~P~iLLLDEPtagL----D~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~ 305 (382)
+|+++++||||+++ |+...+.+.+.++.++++| .| +++||+...
T Consensus 117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g----------~t-vi~t~~~~~ 164 (230)
T PRK08533 117 EKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLN----------KV-IILTANPKE 164 (230)
T ss_pred CCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCC----------CE-EEEEecccc
Confidence 69999999999999 8888889999999998766 34 555676554
No 431
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=8.2e-13 Score=148.95 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=74.1
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHhc-------CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCC
Q 016804 216 LKGVEDRLPSELSGGMKKRVALARSIIF-------DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLA 288 (382)
Q Consensus 216 L~~~~~~~~~~LSGGqrQRVaIArAL~~-------~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~ 288 (382)
+....++.+.+|||||++||+||+||+. . ..+|++||+||||++||+.+...++++|.++...|
T Consensus 940 ~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~----~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g----- 1010 (1042)
T TIGR00618 940 AYTGSVRPSATLSGGETFLASLSLALALADLLSTSG----GTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGS----- 1010 (1042)
T ss_pred CCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhcc----CCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCC-----
Confidence 3445677899999999999999999973 1 12699999999999999999999999999998765
Q ss_pred CCCCceEEEEEccCHHHHHHhhchh
Q 016804 289 NPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 289 ~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
.+|+||||+.+....++|+|
T Consensus 1011 -----~~i~iisH~~~~~~~~~~~i 1030 (1042)
T TIGR00618 1011 -----KMIGIISHVPEFRERIPHRI 1030 (1042)
T ss_pred -----CEEEEEeCcHHHHHhhCCEE
Confidence 58999999999999999988
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.40 E-value=1.6e-12 Score=142.47 Aligned_cols=139 Identities=20% Similarity=0.291 Sum_probs=98.6
Q ss_pred eeEEEe-CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE-EEecCCCCCCCCCHHHH
Q 016804 110 VSFKIR-HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDSLTVREN 187 (382)
Q Consensus 110 vsl~i~-~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig-~V~Q~~~l~~~lTV~en 187 (382)
.++.+. .+.++.|.|||++||||+||.++...- .. ++| +||-+.. ..+.++++
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~---------------------ma--q~G~~vpa~~~--~~i~~~~~ 373 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL---------------------MA--KSGLPIPANEP--SEIPVFKE 373 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHH---------------------HH--HhCCCcccCCC--ccccccce
Confidence 344444 457899999999999999999953310 00 223 4554321 11233344
Q ss_pred HHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHH
Q 016804 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (382)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~ 267 (382)
|.. .+|-.+...+.++++|+||+|++.|++++- +|.++|+|||++|+||.
T Consensus 374 i~~----------------------~ig~~~si~~~lStfS~~m~~~~~Il~~~~--------~~sLvLlDE~~~GtDp~ 423 (782)
T PRK00409 374 IFA----------------------DIGDEQSIEQSLSTFSGHMTNIVRILEKAD--------KNSLVLFDELGAGTDPD 423 (782)
T ss_pred EEE----------------------ecCCccchhhchhHHHHHHHHHHHHHHhCC--------cCcEEEecCCCCCCCHH
Confidence 311 122333455678899999999999999993 59999999999999999
Q ss_pred HHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 268 ASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 268 ~~~~l~-~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
....+. .++..+.+.+ .++|++||+.+.....+++.
T Consensus 424 eg~ala~aile~l~~~~----------~~vIitTH~~el~~~~~~~~ 460 (782)
T PRK00409 424 EGAALAISILEYLRKRG----------AKIIATTHYKELKALMYNRE 460 (782)
T ss_pred HHHHHHHHHHHHHHHCC----------CEEEEECChHHHHHHHhcCC
Confidence 988885 4677777665 58999999999888877766
No 433
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.37 E-value=8.7e-13 Score=138.70 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=62.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhc-CC--CCCCCCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE
Q 016804 222 RLPSELSGGMKKRVALARSIIF-DN--TKESVEPEVLLYDEPT-AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297 (382)
Q Consensus 222 ~~~~~LSGGqrQRVaIArAL~~-~~--~~~a~~P~iLLLDEPt-agLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiI 297 (382)
..+.+||||||||++||+||+. +- .+...+|++||||||| ++||+..+..+.+.|.++ ++ .|+|
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~----------~~ii 531 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KD----------TNVF 531 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CC----------CeEE
Confidence 3568999999999999999861 00 0000159999999998 789999999999999998 34 4999
Q ss_pred EEccCHHHHHHhhchh
Q 016804 298 VVTHQHSTIRRAVDRL 313 (382)
Q Consensus 298 ivTHdl~~~~~~aDrv 313 (382)
+|||+.+.. ..|||+
T Consensus 532 iish~~~~~-~~~d~~ 546 (562)
T PHA02562 532 VISHKDHDP-QKFDRH 546 (562)
T ss_pred EEECchhch-hhhhcE
Confidence 999997655 467877
No 434
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.37 E-value=1.2e-12 Score=138.77 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
..|||||+||++||++++..+. .+|++|||||||+|||+.....+.+.|+++.+ + .+||+|||++.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~---~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~----------~~vi~iTH~~~ 504 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSS---AAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-R----------HQVLCVTHLPQ 504 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-C----------CEEEEEEChHH
Confidence 4789999999999999986310 13799999999999999999999999999975 4 49999999998
Q ss_pred HHHHhhchh
Q 016804 305 TIRRAVDRL 313 (382)
Q Consensus 305 ~~~~~aDrv 313 (382)
.+. +||++
T Consensus 505 ~~~-~ad~~ 512 (563)
T TIGR00634 505 VAA-HADAH 512 (563)
T ss_pred HHH-hcCeE
Confidence 875 78877
No 435
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.34 E-value=5e-12 Score=114.11 Aligned_cols=67 Identities=27% Similarity=0.388 Sum_probs=53.1
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEP-EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P-~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
...+|.|+||.+.|+.+|... .+. .++++|||-++|+|..+..+.+.|.++.+.+ .-+|++||.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~-----~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~----------~QviitTHS 298 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSA-----KKNGSILLIDEPENHLHPSWQRKLIELLKELSKKN----------IQVIITTHS 298 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTT-----TTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGS----------SEEEEEES-
T ss_pred eccCCHHHHHHHHHHHHHhCc-----CCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccC----------CEEEEeCcc
Confidence 467799999999999998863 223 9999999999999999999999998887633 479999998
Q ss_pred HHH
Q 016804 303 HST 305 (382)
Q Consensus 303 l~~ 305 (382)
...
T Consensus 299 p~i 301 (303)
T PF13304_consen 299 PFI 301 (303)
T ss_dssp GGG
T ss_pred chh
Confidence 754
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.34 E-value=2.1e-11 Score=114.91 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=91.7
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~ 181 (382)
++..+-+|++|++++|++++|.||||+||||+++++++..-... -|-.+. .. ..+++++. .+|..
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-----~G~~vp----a~---~~~i~~~~---~i~~~ 79 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-----MGMDVP----AK---SMRLSLVD---RIFTR 79 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-----cCCccC----cc---ccEecccc---EEEEe
Confidence 35678999999999999999999999999999999987643211 011110 00 01233221 12223
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
+...|++..+.. .+. -|-+++ ++.|-. +.+|.++|+|||+
T Consensus 80 ~~~~d~~~~~~S--------------------------------tF~-~e~~~~--~~il~~-----~~~~sLvLlDE~~ 119 (218)
T cd03286 80 IGARDDIMKGES--------------------------------TFM-VELSET--ANILRH-----ATPDSLVILDELG 119 (218)
T ss_pred cCcccccccCcc--------------------------------hHH-HHHHHH--HHHHHh-----CCCCeEEEEeccc
Confidence 333344432110 010 112222 222211 1269999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 262 AGLDPIASTVVEDL-IRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 262 agLD~~~~~~l~~l-L~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
+|+|+.....+... ++.|.+. + .++|++||+++.+..++
T Consensus 120 ~Gt~~~dg~~la~ail~~L~~~~~----------~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 120 RGTSTHDGYAIAHAVLEYLVKKVK----------CLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCCCchHHHHHHHHHHHHHHHhcC----------CcEEEEeccHHHHHHhh
Confidence 99999998888888 7777764 4 58999999999988875
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.32 E-value=1.1e-11 Score=111.59 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=67.3
Q ss_pred HHcCCcccccCCCCCCChHHHH-----HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcC
Q 016804 212 AAVGLKGVEDRLPSELSGGMKK-----RVALARSIIFDNTKESVEPEVLLYDEPTAGLD---PIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 212 ~~~gL~~~~~~~~~~LSGGqrQ-----RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD---~~~~~~l~~lL~~l~~~g 283 (382)
...|.....+..+..+|+|++| +..+.+++.. .+|+++++|||++.+| ...+..+.++++.+++.|
T Consensus 57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~------~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g 130 (187)
T cd01124 57 EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEE------FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFG 130 (187)
T ss_pred HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHH------hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCC
Confidence 3456556678889999999998 3444444432 3799999999999999 888888999999998776
Q ss_pred CCCCCCCCCceEEEEEccCHHH---------HHHhhchh
Q 016804 284 ENGLANPGNIASYVVVTHQHST---------IRRAVDRL 313 (382)
Q Consensus 284 ~~~~~~~~~~~tiIivTHdl~~---------~~~~aDrv 313 (382)
.|+|+++|+... +..+||.+
T Consensus 131 ----------~tvi~v~~~~~~~~~~~~~~~~~~~aD~i 159 (187)
T cd01124 131 ----------VTTLLTSEQSGLEGTGFGGGDVEYLVDGV 159 (187)
T ss_pred ----------CEEEEEeccccCCCcccCcCceeEeeeEE
Confidence 599999998765 55666666
No 438
>PRK13695 putative NTPase; Provisional
Probab=99.31 E-value=2.9e-12 Score=115.43 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=61.6
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP--TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 222 ~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP--tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
++...|||+++-++.+++..+. +|+++++||| +.++|+. +.+.+.++.+.+ .++|++
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~-------~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~----------~~~i~v 132 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALE-------EADVIIIDEIGKMELKSPK----FVKAVEEVLDSE----------KPVIAT 132 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccC-------CCCEEEEECCCcchhhhHH----HHHHHHHHHhCC----------CeEEEE
Confidence 4455799999999999988875 6999999995 4455443 456666665555 489999
Q ss_pred ccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEE
Q 016804 300 THQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQ 354 (382)
Q Consensus 300 THdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~ 354 (382)
+|+. .+...+|++ ..+++|+|.+-
T Consensus 133 ~h~~-~~~~~~~~i------------------------------~~~~~~~i~~~ 156 (174)
T PRK13695 133 LHRR-SVHPFVQEI------------------------------KSRPGGRVYEL 156 (174)
T ss_pred ECch-hhHHHHHHH------------------------------hccCCcEEEEE
Confidence 9994 555678887 88999998765
No 439
>PRK10869 recombination and repair protein; Provisional
Probab=99.30 E-value=7e-12 Score=132.75 Aligned_cols=73 Identities=27% Similarity=0.390 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHH
Q 016804 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (382)
Q Consensus 226 ~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~ 305 (382)
.|||||+||++||++++..+ ..+|+++|||||++|||......+.+.|+++.+. .+||+|||++..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~---~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~-----------~qvi~iTH~~~~ 495 (553)
T PRK10869 430 VASGGELSRIALAIQVITAR---KMETPALIFDEVDVGISGPTAAVVGKLLRQLGES-----------TQVMCVTHLPQV 495 (553)
T ss_pred hCCHHHHHHHHHHHHHHhcc---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcC-----------CEEEEEecCHHH
Confidence 47999999999999999520 1258999999999999999999999999999653 489999999987
Q ss_pred HHHhhchh
Q 016804 306 IRRAVDRL 313 (382)
Q Consensus 306 ~~~~aDrv 313 (382)
+ .+||+.
T Consensus 496 ~-~~ad~~ 502 (553)
T PRK10869 496 A-GCGHQH 502 (553)
T ss_pred H-HhCCEE
Confidence 6 688877
No 440
>PRK01156 chromosome segregation protein; Provisional
Probab=99.29 E-value=1.6e-11 Score=136.37 Aligned_cols=78 Identities=29% Similarity=0.375 Sum_probs=64.5
Q ss_pred CCCCCCChHHHHHHHH------HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCce
Q 016804 222 RLPSELSGGMKKRVAL------ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIA 294 (382)
Q Consensus 222 ~~~~~LSGGqrQRVaI------ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~ 294 (382)
..+..||||||+|++| ||+|+. +|++++|||||++||+..+..+.++|...... +. ..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~-------~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~--------~~ 861 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNN-------DKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSD--------IP 861 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhcc-------CCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC--------CC
Confidence 4688999999999975 488886 59999999999999999999999999865433 21 13
Q ss_pred EEEEEccCHHHHHHhhchhcc
Q 016804 295 SYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 295 tiIivTHdl~~~~~~aDrv~~ 315 (382)
++|+||||.+.+ .+||+++.
T Consensus 862 ~ii~ish~~~~~-~~~d~ii~ 881 (895)
T PRK01156 862 QVIMISHHRELL-SVADVAYE 881 (895)
T ss_pred eEEEEECchHHH-HhcCeEEE
Confidence 899999999876 58998843
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.27 E-value=2.7e-11 Score=124.38 Aligned_cols=175 Identities=21% Similarity=0.240 Sum_probs=116.3
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.++.+.++..|. +..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer--------------- 193 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER--------------- 193 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC---------------
Confidence 367788888885 35688885 9999999999999999999999999999999998877766642
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
..+|.|++...+. .-++.. ..=...++.|.|+|+|++.+.+.+...-.+
T Consensus 194 -----------g~ev~e~~~~~l~-------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~ 243 (432)
T PRK06793 194 -----------GREVKDFIRKELG-------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRD 243 (432)
T ss_pred -----------cccHHHHHHHHhh-------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1356666543211 001110 111446788999999999988876100000
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
..++-+|++|+||...|+. +++...+.+.-..| -+..+.||. .++++|...+. .|+|-.++.+
T Consensus 244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G----------~~~~~~s~l----~~L~ERag~~~-~GSiT~~~tv 306 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGG----------KTLLMESYM----KKLLERSGKTQ-KGSITGIYTV 306 (432)
T ss_pred cCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCC----------eeeeeeccc----hhHHHHhccCC-CcceEEEEEE
Confidence 1369999999999999995 55555555443223 477777883 44555552222 4444444443
No 442
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.8e-11 Score=141.08 Aligned_cols=75 Identities=23% Similarity=0.312 Sum_probs=65.9
Q ss_pred CCCCCCChHHHH------HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCCCCCCC
Q 016804 222 RLPSELSGGMKK------RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-----KGENGLANP 290 (382)
Q Consensus 222 ~~~~~LSGGqrQ------RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-----~g~~~~~~~ 290 (382)
..+..||||||| |++|||||+. +|++|+|||||++||+.+...+.+.|..+.. .|
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~-------~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~------- 1260 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCL-------NCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN------- 1260 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhc-------CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccC-------
Confidence 345789999999 9999999997 6999999999999999999999999988743 13
Q ss_pred CCceEEEEEccCHHHHHHhhchh
Q 016804 291 GNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 291 ~~~~tiIivTHdl~~~~~~aDrv 313 (382)
.++|+||||++++..+|.+.
T Consensus 1261 ---~~viiitHd~~~~~~~~~~~ 1280 (1311)
T TIGR00606 1261 ---FQLLVITHDEDFVELLGRSE 1280 (1311)
T ss_pred ---CeEEEEecCHHHHHHHhhcc
Confidence 59999999999999997543
No 443
>PRK03918 chromosome segregation protein; Provisional
Probab=99.26 E-value=1.2e-11 Score=136.67 Aligned_cols=75 Identities=27% Similarity=0.345 Sum_probs=63.6
Q ss_pred cCCCCCCChHHHHHH------HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 016804 221 DRLPSELSGGMKKRV------ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (382)
Q Consensus 221 ~~~~~~LSGGqrQRV------aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~ 294 (382)
++++..|||||+|++ +||++++. +|+++||||||++||+..+..+.++|..+...+ .
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~-------~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~----------~ 845 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAG-------NIPLLILDEPTPFLDEERRRKLVDIMERYLRKI----------P 845 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcC-------CCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcC----------C
Confidence 466789999999954 55556764 699999999999999999999999999987655 4
Q ss_pred EEEEEccCHHHHHHhhchh
Q 016804 295 SYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 295 tiIivTHdl~~~~~~aDrv 313 (382)
++|+||||.+. ..+||++
T Consensus 846 ~iiiith~~~~-~~~~d~~ 863 (880)
T PRK03918 846 QVIIVSHDEEL-KDAADYV 863 (880)
T ss_pred EEEEEECCHHH-HHhCCeE
Confidence 89999999875 5689888
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.25 E-value=7.7e-11 Score=130.03 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=57.6
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhcCC---------------CCCCCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHc
Q 016804 219 VEDRLPSELSGGMKKRVALARSIIFDN---------------TKESVEPEVLLYDEPTAGL-DPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 219 ~~~~~~~~LSGGqrQRVaIArAL~~~~---------------~~~a~~P~iLLLDEPtagL-D~~~~~~l~~lL~~l~~~ 282 (382)
+.+.....||.|+.|.+.|...+-... .....+|+++++|||+.+| |+.....+.+.++++++.
T Consensus 605 lfd~~~d~l~~~~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~ 684 (818)
T PRK13830 605 LLDAEEDGLALGAFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA 684 (818)
T ss_pred ecCCCccccCccceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc
Confidence 345555678887656554443320000 0002479999999999999 799999999999999887
Q ss_pred CCCCCCCCCCceEEEEEccCHHHHH
Q 016804 283 GENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 283 g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+ .+++++||+++.+.
T Consensus 685 ~----------~~vil~Tq~~~d~~ 699 (818)
T PRK13830 685 N----------CAVVLATQSISDAE 699 (818)
T ss_pred C----------CEEEEEeCCHHHHh
Confidence 6 48999999999986
No 445
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.25 E-value=2.7e-12 Score=132.32 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=56.3
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEECCCCCChhhhccceEEEEecCC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG-~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~ 176 (382)
.+|++|||++++||+++|+|||||||||||+ +|+..|++| +|.++|+++... ....+...+ +|||+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~-~~~ai~~LR--~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSP-NKNAMETLD--EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCC-CHHHHHHHH--HHHHhh
Confidence 5899999999999999999999999999999 788889988 799999998764 333333334 888875
No 446
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.22 E-value=3.5e-11 Score=135.88 Aligned_cols=82 Identities=23% Similarity=0.253 Sum_probs=65.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhc-CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 016804 220 EDRLPSELSGGMKKRVALARSIIF-DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIArAL~~-~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIi 298 (382)
.++.+.+|||||+++++||+||+. |-.....+|++||+||||++||+.+...+++.|..+.+.| +||+|
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g----------~~v~i 1012 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASG----------KTIGV 1012 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEE
Confidence 458899999999999999999983 0000002599999999999999999999999999998776 59999
Q ss_pred EccCHHHHHHhhc
Q 016804 299 VTHQHSTIRRAVD 311 (382)
Q Consensus 299 vTHdl~~~~~~aD 311 (382)
|||......++..
T Consensus 1013 isH~~~l~~~i~~ 1025 (1047)
T PRK10246 1013 ISHVEAMKERIPV 1025 (1047)
T ss_pred EecHHHHHHhccc
Confidence 9996555444433
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.22 E-value=3e-11 Score=119.05 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=39.4
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 110 vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
+++.++.|+.++|+||+|||||||+++|+++++++.|.+.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence 5577889999999999999999999999999999999888864
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.20 E-value=1.1e-10 Score=107.35 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=59.0
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
..+.....|-||-=---+.+.+- +.-+.|||||-|+|.|.-+.+++..|+++.+.| .-+||+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~rf~--------~~GiYiLDEPEa~LSp~RQlella~l~~la~sG----------aQ~IiA 184 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNRFN--------GQGIYILDEPEAALSPSRQLELLAILRDLADSG----------AQIIIA 184 (233)
T ss_pred CCcchhhhccchHHHHHHHHHhc--------cCceEEecCccccCCHHHHHHHHHHHHHHHhcC----------CeEEEE
Confidence 34445678999988888888886 479999999999999999999999999999987 479999
Q ss_pred ccCHHHH
Q 016804 300 THQHSTI 306 (382)
Q Consensus 300 THdl~~~ 306 (382)
||..=..
T Consensus 185 THSPiLl 191 (233)
T COG3910 185 THSPILL 191 (233)
T ss_pred ecChhhe
Confidence 9986443
No 449
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.18 E-value=3.2e-11 Score=135.51 Aligned_cols=77 Identities=29% Similarity=0.380 Sum_probs=67.2
Q ss_pred cccCCCCCCChHHHHHHHHHHHHh---cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE
Q 016804 219 VEDRLPSELSGGMKKRVALARSII---FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295 (382)
Q Consensus 219 ~~~~~~~~LSGGqrQRVaIArAL~---~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~t 295 (382)
..+.++..||||||||++||++++ . ..|+++||||||++||+..+..+.++|.++++. .+
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~------~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-----------~~ 1144 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKV------KPAPFCILDEVDAPLDDANVERFANLLKEFSKN-----------TQ 1144 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHcc------CCCCeEEecCccccccHHHHHHHHHHHHHhccC-----------CE
Confidence 345678999999999999999984 2 257999999999999999999999999998654 38
Q ss_pred EEEEccCHHHHHHhhchh
Q 016804 296 YVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 296 iIivTHdl~~~~~~aDrv 313 (382)
+|||||+++.+ .+||++
T Consensus 1145 ~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168 1145 FIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred EEEEEcChhHH-HHhhhH
Confidence 99999999976 579998
No 450
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.10 E-value=1.6e-10 Score=130.31 Aligned_cols=79 Identities=25% Similarity=0.280 Sum_probs=65.9
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 016804 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (382)
Q Consensus 221 ~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivT 300 (382)
.+.+..||||||++++||++|+.. ....|+++|||||+++||+.++..+.++|.++.+. .++|++|
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~---~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-----------~~~i~~t 1134 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQ---RYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-----------AQFIVVS 1134 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHH---hcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-----------CeEEEEE
Confidence 345679999999999999999730 01258999999999999999999999999998654 3799999
Q ss_pred cCHHHHHHhhchhc
Q 016804 301 HQHSTIRRAVDRLC 314 (382)
Q Consensus 301 Hdl~~~~~~aDrv~ 314 (382)
|+...+ .+||+++
T Consensus 1135 ~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169 1135 LRSPMI-EYADRAI 1147 (1164)
T ss_pred CcHHHH-HhcceeE
Confidence 998755 7899883
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.10 E-value=3.2e-10 Score=97.96 Aligned_cols=131 Identities=16% Similarity=0.119 Sum_probs=77.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (382)
++.|.||||+||||+++.+++...+..|.|.+.+ .+.... ...++... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~---------------------~e~~~~---~~~~~~~~-------~ 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD---------------------IEEEIE---ELTERLIG-------E 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE---------------------CCcchH---HHHHHHhh-------h
Confidence 3689999999999999999998876555554433 221111 01111100 0
Q ss_pred CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC----------CCCHHH
Q 016804 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA----------GLDPIA 268 (382)
Q Consensus 199 ~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta----------gLD~~~ 268 (382)
... ...+...+........+.++.++++.+++... +|+++++||+++ +.|...
T Consensus 50 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lviDe~~~~~~~~~~~~~~~~~~~ 112 (165)
T cd01120 50 SLK----------GALDNLIIVFATADDPAAARLLSKAERLRERG-------GDDLIILDELTRLVRALREIREGYPGEL 112 (165)
T ss_pred hhc----------cccccEEEEEcCCCCCcHHHHHHHHHHHHhCC-------CCEEEEEEcHHHHHHHHHHHHhcCChHH
Confidence 000 00011112223333445556667777777765 699999999995 445555
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 269 ~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
...+.+++..+.+.+ .|+|+++|......
T Consensus 113 ~~~l~~l~~~~~~~~----------~~vv~~~~~~~~~~ 141 (165)
T cd01120 113 DEELRELLERARKGG----------VTVIFTLQVPSGDK 141 (165)
T ss_pred HHHHHHHHHHHhcCC----------ceEEEEEecCCccc
Confidence 666666666654444 69999999875543
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.00 E-value=8.4e-10 Score=114.89 Aligned_cols=147 Identities=15% Similarity=0.258 Sum_probs=92.1
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~ 185 (382)
++++.++.+++|++++++||||+||||++..|++.+....|. .+|++|.+++ | ..++.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-------------------~kV~LI~~Dt--~-RigA~ 302 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-------------------SKVALLTTDS--Y-RIGGH 302 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-------------------CeEEEEeCCc--c-chhHH
Confidence 566777788899999999999999999999999887655442 1488999887 3 46899
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHH-HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKK-RVALARSIIFDNTKESVEPEVLLYDEPTAGL 264 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQ-RVaIArAL~~~~~~~a~~P~iLLLDEPtagL 264 (382)
|++.+..... +.+........+......++.+.....+.+...+++. .+.-+.+++.+... ..+ .+|+||.++.+
T Consensus 303 EQLr~~Aeil-GVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~-p~e-~~LVLdAt~~~- 378 (484)
T PRK06995 303 EQLRIYGKIL-GVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGA-PVK-RLLLLNATSHG- 378 (484)
T ss_pred HHHHHHHHHh-CCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCC-CCe-eEEEEeCCCcH-
Confidence 9998865432 1221111222333445566766555666675444432 23334444432100 011 78999999887
Q ss_pred CHHHHHHHHHHHHHHHHcC
Q 016804 265 DPIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 265 D~~~~~~l~~lL~~l~~~g 283 (382)
..+.+.++.+...+
T Consensus 379 -----~~l~~i~~~f~~~~ 392 (484)
T PRK06995 379 -----DTLNEVVQAYRGPG 392 (484)
T ss_pred -----HHHHHHHHHhccCC
Confidence 33455555554443
No 453
>PRK02224 chromosome segregation protein; Provisional
Probab=98.99 E-value=9.7e-10 Score=121.86 Aligned_cols=79 Identities=33% Similarity=0.423 Sum_probs=63.9
Q ss_pred CCCCCChHHHH------HHHHHHHHhcCCCCCCCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE
Q 016804 223 LPSELSGGMKK------RVALARSIIFDNTKESVE-PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295 (382)
Q Consensus 223 ~~~~LSGGqrQ------RVaIArAL~~~~~~~a~~-P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~t 295 (382)
.+..||||||| |++||++++.... ... ++++||||||++||+..+..+.++|..+...|. .+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~--~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~---------~q 846 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIE--GDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGV---------EQ 846 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhccc--CCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCC---------Ce
Confidence 36799999999 9999999874100 001 267999999999999999999999999976542 37
Q ss_pred EEEEccCHHHHHHhhchh
Q 016804 296 YVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 296 iIivTHdl~~~~~~aDrv 313 (382)
||+||||.+.+. .||++
T Consensus 847 viiish~~~~~~-~ad~~ 863 (880)
T PRK02224 847 IVVVSHDDELVG-AADDL 863 (880)
T ss_pred EEEEECChHHHH-hcCee
Confidence 999999998885 68887
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.96 E-value=5.4e-09 Score=98.48 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=85.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIA-GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~-Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~ 191 (382)
-+++|.++.|.|++|||||||...++ +... ..+ ++.|+..+. +..+-+.-.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~---------------------~~~y~~~e~------~~~~~~~~~ 72 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK---------------------KVYVITTEN------TSKSYLKQM 72 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC---------------------EEEEEEcCC------CHHHHHHHH
Confidence 48899999999999999999998885 2111 111 244554321 222221110
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC---CCHHH
Q 016804 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG---LDPIA 268 (382)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag---LD~~~ 268 (382)
. ..+++-.+. .....+ .+.+..-......|.++++.+..++.++.. .+|+++++||||+. +|...
T Consensus 73 ~--~~g~~~~~~--~~~g~l---~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~-----~~~~~iviDs~t~~~~~~~~~~ 140 (234)
T PRK06067 73 E--SVKIDISDF--FLWGYL---RIFPLNTEGFEWNSTLANKLLELIIEFIKS-----KREDVIIIDSLTIFATYAEEDD 140 (234)
T ss_pred H--HCCCChhHH--HhCCCc---eEEeccccccccCcchHHHHHHHHHHHHHh-----cCCCEEEEecHHHHHhcCCHHH
Confidence 0 011111110 000001 111111112234578899999999999862 47999999999964 44555
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 269 ~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
...+.+.++.+++++ .|+++++|+.......+++
T Consensus 141 ~~~~l~~l~~l~~~g----------~tvllt~~~~~~~~~~~~~ 174 (234)
T PRK06067 141 ILNFLTEAKNLVDLG----------KTILITLHPYAFSEELLSR 174 (234)
T ss_pred HHHHHHHHHHHHhCC----------CEEEEEecCCcCCHHHHHH
Confidence 555555566666665 5899999976553333333
No 455
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.94 E-value=1.4e-09 Score=99.35 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=61.4
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCC--CCCCCCCH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA--ALFDSLTV 184 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~--~l~~~lTV 184 (382)
.+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... . .+..+++++|.. ..++..+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~---~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--P---HPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--C---CCCEEEEEEecCCCCCCCccCH
Confidence 3345567899999999999999999999999999999999999987532211 1 122467776654 34666788
Q ss_pred HHHHHhhHh
Q 016804 185 RENVGFLLY 193 (382)
Q Consensus 185 ~eni~~~~~ 193 (382)
.+.+...++
T Consensus 90 ~~~l~~~lR 98 (186)
T cd01130 90 ADLLRSALR 98 (186)
T ss_pred HHHHHHHhc
Confidence 888876553
No 456
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.93 E-value=1.8e-09 Score=111.33 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=68.6
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC---EECCCCCChh--h
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG---RKRAGLISDE--E 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G---~~i~~~~~~~--~ 163 (382)
..++.+++++.|. +..+++.++ .|.+||+++|+||||||||||+++|+++.+|+.|.|.+.| +++..+.... .
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 3589999999995 467999996 9999999999999999999999999999999999999864 5443321111 1
Q ss_pred hccceEEEEecCC
Q 016804 164 ISGLRIGLVFQSA 176 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~ 176 (382)
..++.|+||+|..
T Consensus 217 ~r~rtI~vV~qsd 229 (450)
T PRK06002 217 NLKKAVAVVATSD 229 (450)
T ss_pred hhCCeEEEEEcCC
Confidence 1223699999965
No 457
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.89 E-value=1.4e-09 Score=111.85 Aligned_cols=89 Identities=20% Similarity=0.283 Sum_probs=67.6
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE---EEECCEECCCCCChh----hhccceEEEEecC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE---VYIRGRKRAGLISDE----EISGLRIGLVFQS 175 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~---I~i~G~~i~~~~~~~----~~~~~~Ig~V~Q~ 175 (382)
+..+++++ |++.+|++++|+||||||||||+++|+|+.+++.+. |-.+|+++....... ...+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999999998643 333443332211110 1123359999999
Q ss_pred CCCCCCCCHHHHHHhhH
Q 016804 176 AALFDSLTVRENVGFLL 192 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~ 192 (382)
...+..+++.+++.+..
T Consensus 221 ~s~~~rl~a~e~a~~iA 237 (434)
T PRK07196 221 ESPLMRIKATELCHAIA 237 (434)
T ss_pred CChhhhHHHHHHHHHHH
Confidence 99998899999987644
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.89 E-value=7.3e-08 Score=79.56 Aligned_cols=119 Identities=28% Similarity=0.406 Sum_probs=78.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhh
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE 194 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s-G~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~ 194 (382)
.+..+.|+||+|+||||+++.|+..+.... +-+.++....... ......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE----VLDQLL-------------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc----CHHHHH--------------------------
Confidence 467899999999999999999999987665 4555555432110 000000
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 016804 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274 (382)
Q Consensus 195 ~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~ 274 (382)
............+++..+..+++|--. +|.++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~viiiDei~~~~~~~~~~~~~~ 101 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKL-------KPDVLILDEITSLLDAEQEALLLL 101 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhc-------CCCEEEEECCcccCCHHHHHHHHh
Confidence 111222334677888888888888864 479999999999999988876664
Q ss_pred H-----HHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 275 L-----IRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 275 l-----L~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
. ......... ..+|.++|.
T Consensus 102 ~~~~~~~~~~~~~~~---------~~~i~~~~~ 125 (148)
T smart00382 102 LEELRLLLLLKSEKN---------LTVILTTND 125 (148)
T ss_pred hhhhHHHHHHHhcCC---------CEEEEEeCC
Confidence 1 222222221 478888884
No 459
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.88 E-value=5.6e-11 Score=124.03 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=101.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHH--HcCCCCCccEEEECCEECCCCCChhhhc--cceEEEEecCCCCCCCCCHHHHH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKII--AGLLAPDKGEVYIRGRKRAGLISDEEIS--GLRIGLVFQSAALFDSLTVRENV 188 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI--~Gl~~p~sG~I~i~G~~i~~~~~~~~~~--~~~Ig~V~Q~~~l~~~lTV~eni 188 (382)
=+++|..+.|.||+|||||||..-+ .|..+..+.-+++...+ +..+.. ...+||-+++..-- +++
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE-----~~~~l~~~~~~~G~~~~~~~~~------g~l 85 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE-----SPQDIIKNARSFGWDLQKLVDE------GKL 85 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-----CHHHHHHHHHHcCCCHHHHhhc------Cce
Confidence 3789999999999999999999876 56666566777776643 122211 11366655532100 011
Q ss_pred HhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH--HHHhcCCCCCCCCCcEEEEeCCCCCCCH
Q 016804 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA--RSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (382)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA--rAL~~~~~~~a~~P~iLLLDEPtagLD~ 266 (382)
.+ . . ..... ....+++.+++.+..++.+..+|+|++|||.|+ .+|.. .|+.. .
T Consensus 86 ~~-~---~-~~~~~---~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~-------~~~~~----------~ 140 (484)
T TIGR02655 86 FI-L---D-ASPDP---EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQ-------QYDAV----------S 140 (484)
T ss_pred EE-E---e-cCchh---ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhh-------hcCch----------H
Confidence 10 0 0 00000 011245566777788888999999999999999 55543 23332 5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH---------HHhhchhccc
Q 016804 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI---------RRAVDRLCLF 316 (382)
Q Consensus 267 ~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~---------~~~aDrv~~~ 316 (382)
..++.+.++++.+++.| .|+|+++|+.+.. ..+||.|+.|
T Consensus 141 ~~r~~l~~Li~~L~~~g----------~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L 189 (484)
T TIGR02655 141 VVRREIFRLVARLKQIG----------VTTVMTTERIEEYGPIARYGVEEFVSDNVVIL 189 (484)
T ss_pred HHHHHHHHHHHHHHHCC----------CEEEEEecCcccccccccCCceeEeeeeEEEE
Confidence 67888999999998776 6999999987642 4456666444
No 460
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.87 E-value=2.7e-09 Score=109.95 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=83.6
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECC---EECCCCCChhhh-ccceEEEE-----e
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRG---RKRAGLISDEEI-SGLRIGLV-----F 173 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G---~~i~~~~~~~~~-~~~~Ig~V-----~ 173 (382)
..+++++ |.+.+||.++|+|+||||||||+++|+|+.++ +.|.|.+.| +++......... ...+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5689998 99999999999999999999999999999854 456777644 444322111111 12245666 9
Q ss_pred cCCC--CCCCCCHHHHHHhhHhhcCC--CCHHHHHHHHHHHHHHcCCc-----ccccCCCCCCCh
Q 016804 174 QSAA--LFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAVGLK-----GVEDRLPSELSG 229 (382)
Q Consensus 174 Q~~~--l~~~lTV~eni~~~~~~~~~--~~~~~~~~~v~~~L~~~gL~-----~~~~~~~~~LSG 229 (382)
|+|. +.+.+ +...++..+..+.. ....+...++.++++.++|. .....+|+.||.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~ 294 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST 294 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH
Confidence 9874 44444 55555554433321 12244567788999999993 466788888874
No 461
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.86 E-value=7.6e-08 Score=106.95 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=48.4
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGL-DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagL-D~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
|++++.. +|+++++|||+.+| |+..+..+.+.++.+++.+ .+++++||+++.+..
T Consensus 680 i~~~l~~-------~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g----------~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKG-------QPAVIILDEAWLMLGHPAFRAKIREWLKVLRKAN----------CLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcC-------CCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHhh
Confidence 5666654 79999999999999 7999999999999998876 489999999999976
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.86 E-value=8.7e-09 Score=97.53 Aligned_cols=137 Identities=23% Similarity=0.300 Sum_probs=81.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC-EECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhc
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG-RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN 195 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G-~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~ 195 (382)
|.+..|+||.|+|||||+-.++=- ..+|.=.+++ ... ....++-|+.=+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~--va~G~~~~g~~~~~--------~~~~~Vlyi~~E-------------------- 50 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALA--MALGKNLFGGGLKV--------TEPGRVVYLSAE-------------------- 50 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHH--HhcCccccCCcccc--------CCCceEEEEECC--------------------
Confidence 678899999999999999888632 1233222211 100 001134444311
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHH----------------HHhcCCCCCCCCCcEEEEeC
Q 016804 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR----------------SIIFDNTKESVEPEVLLYDE 259 (382)
Q Consensus 196 ~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIAr----------------AL~~~~~~~a~~P~iLLLDE 259 (382)
.+.+++.+++..+...+++.+..++... .+|+.|++.+++ +.. .+|+++++|
T Consensus 51 --d~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~-------~~~~lvviD- 118 (239)
T cd01125 51 --DPREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLI-------RRIDLVVID- 118 (239)
T ss_pred --CCHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHh-------cCCCEEEEC-
Confidence 1122334445555555554443333322 245666655544 222 379999999
Q ss_pred CCCC------CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 260 PTAG------LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 260 Ptag------LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
|+++ +|+.....+++.|.+++++.+ .|+|+++|...
T Consensus 119 pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g---------~avl~v~H~~K 160 (239)
T cd01125 119 PLVSFHGVSENDNGAMDAVIKALRRIAAQTG---------AAILLVHHVRK 160 (239)
T ss_pred ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhC---------CEEEEEeccCc
Confidence 7764 799999999999999987521 69999999864
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.82 E-value=3.4e-08 Score=91.29 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|+++|.. +|+++++|||. |++.. ..++ +....| ..++.++|..+.+ ...||++.
T Consensus 66 ~i~~aLr~-------~pd~ii~gEir---d~e~~---~~~l-~~a~~G----------~~v~~t~Ha~~~~-~~~~Rl~~ 120 (198)
T cd01131 66 ALKAALRQ-------DPDVILVGEMR---DLETI---RLAL-TAAETG----------HLVMSTLHTNSAA-KTIDRIID 120 (198)
T ss_pred HHHHHhcC-------CcCEEEEcCCC---CHHHH---HHHH-HHHHcC----------CEEEEEecCCcHH-HHHhHHHh
Confidence 37888875 69999999996 55543 3333 344556 3799999998876 56899854
Q ss_pred cc
Q 016804 316 FQ 317 (382)
Q Consensus 316 ~~ 317 (382)
+-
T Consensus 121 l~ 122 (198)
T cd01131 121 VF 122 (198)
T ss_pred hc
Confidence 43
No 464
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.80 E-value=4.2e-09 Score=96.55 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=68.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (382)
++||.||||||||||.++|++++ ..|.+.+.+.| .... .++..+........+ ..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D---------------------~~~~-~~~~~~~~~~~~~~~-~~ 55 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD---------------------SYYK-DLSHEELEERKNNNY-DH 55 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec---------------------cccc-ccccccHHHhccCCC-CC
Confidence 58999999999999999999998 33444443333 1111 111111111100000 00
Q ss_pred CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHH
Q 016804 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (382)
Q Consensus 199 ~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~ 267 (382)
......+...+.++.+...+..+.+..++|.|++++..+ .+. .++++|+|+|+.+.++.
T Consensus 56 ~~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~-------~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 56 PDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVY-------PADVIILEGILALYDKE 114 (198)
T ss_pred CCcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecC-------CCCEEEEechhhccchh
Confidence 000011233455666666666777788999999887655 343 59999999999999873
No 465
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.79 E-value=1e-07 Score=105.26 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=43.8
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 250 VEPEVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD-~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
.+|.++++|||...|| +.....+.+.++.+++.+ ..++++||+++.+..
T Consensus 641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~----------~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 641 GTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLN----------TFVIFATQSVEDASK 690 (800)
T ss_pred CCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHh
Confidence 4799999999999999 888999999999998776 389999999988664
No 466
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.73 E-value=2e-09 Score=100.71 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=31.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIA-GLLAPDKGEVYIRGR 153 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~-Gl~~p~sG~I~i~G~ 153 (382)
-+++|+++.|.||+|||||||...++ ....+.++-+++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 48899999999999999999988654 233455566777654
No 467
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.73 E-value=2.3e-08 Score=101.10 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=56.2
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 225 SELSGGMKKRVALARSIIFD--NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~--~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
..+|.||||+++||.+|+.- ..+...+|+|||||||+++||+..+..+.+.|.+. | .+++++||+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~----------~qv~it~~~ 340 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---G----------VQVFVTAIS 340 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---C----------CEEEEEecC
Confidence 47999999999999999850 00000149999999999999999999999998764 3 389999999
Q ss_pred HHHHH
Q 016804 303 HSTIR 307 (382)
Q Consensus 303 l~~~~ 307 (382)
++.+.
T Consensus 341 ~~~~~ 345 (365)
T TIGR00611 341 LDHLK 345 (365)
T ss_pred hhhcc
Confidence 87655
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.72 E-value=1.8e-07 Score=96.68 Aligned_cols=51 Identities=29% Similarity=0.515 Sum_probs=46.8
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|+.+|+.|.+...|..
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 46799999 9999999999999999999999999999999999988776654
No 469
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.72 E-value=7.8e-09 Score=94.13 Aligned_cols=70 Identities=26% Similarity=0.377 Sum_probs=52.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.. .....+...|+.+|+...++..++.+|+.+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~---~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP---AKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC---HhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 5999999999999999999999999987 6889987642 11122224677788766666677777776643
No 470
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.64 E-value=4.2e-07 Score=101.10 Aligned_cols=141 Identities=22% Similarity=0.297 Sum_probs=91.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
..+-+|++|. +.+.++.|.|||++||||+||.++-.. -..-| .|||-... .+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G-----------------------~~VPa~~a---~i 647 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG-----------------------SFVPAESA---RI 647 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC-----------------------Cceeccce---Ee
Confidence 3567788887 678899999999999999999986432 01111 12332211 11
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC--
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP-- 260 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP-- 260 (382)
.+.+.| | -++|- .+.....+|--+.....++++|-+ +.++.++|+|||
T Consensus 648 ~~~d~I-~---------------------triga---~d~i~~g~STF~~E~~~~~~il~~-----at~~sLvllDE~Gr 697 (854)
T PRK05399 648 GIVDRI-F---------------------TRIGA---SDDLASGRSTFMVEMTETANILNN-----ATERSLVLLDEIGR 697 (854)
T ss_pred cccCee-e---------------------eccCc---ccccccCcccHHHHHHHHHHHHHh-----CCCCcEEEEecCCC
Confidence 122222 0 01121 122344677778888888888864 457999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 261 -TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 261 -tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+.+|..+ ....+++.+.+.++ .++|++||. .++..++++.
T Consensus 698 GTs~~dg~a--ia~aile~l~~~~~---------~~~l~aTH~-~el~~l~~~~ 739 (854)
T PRK05399 698 GTSTYDGLS--IAWAVAEYLHDKIG---------AKTLFATHY-HELTELEEKL 739 (854)
T ss_pred CCCcchhHH--HHHHHHHHHHhcCC---------ceEEEEech-HHHHHHhhhc
Confidence 99999544 46667777776531 489999999 5556677764
No 471
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.62 E-value=9e-08 Score=110.90 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=72.7
Q ss_pred cccCCCCCCChHHHHHHH----HHHHHhcCC-CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 016804 219 VEDRLPSELSGGMKKRVA----LARSIIFDN-TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (382)
Q Consensus 219 ~~~~~~~~LSGGqrQRVa----IArAL~~~~-~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~ 293 (382)
..++....||||||||++ +|+++++=. .-...+|+++||||||++||+.++..++++|.++ +
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~---------- 1306 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---D---------- 1306 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---C----------
Confidence 344456899999999996 576633000 0012479999999999999999999999999888 3
Q ss_pred eEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCe
Q 016804 294 ASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGK 350 (382)
Q Consensus 294 ~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~ 350 (382)
.++||+||++-- ..+ ++..+=|-.+.+|+= .-+|.-+-+.-||+
T Consensus 1307 ~~~i~~s~~~Wg---~Y~---------tVp~laI~el~R~~~-~~~V~v~ry~WnG~ 1350 (1353)
T TIGR02680 1307 LDFVMTSEREWG---CYP---------EVPGLAICQLLRPDG-VDAVTVSRWTWNGR 1350 (1353)
T ss_pred CCEEEEccchhc---ccc---------CCCcceEEEEecCCC-CCEEEEEEEEeCCc
Confidence 379999998622 222 346666667777632 13555555555665
No 472
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.58 E-value=1.1e-07 Score=106.25 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=64.0
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 222 RLPSELSGGMKKRVALARSIIFDNTKESVE--PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 222 ~~~~~LSGGqrQRVaIArAL~~~~~~~a~~--P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
+.+.+|||||+=.++||-+|+-. ...+.+ -++|+|||||..||+.....+.+.|.++...+ .+|+||
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs-~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~----------~qiiII 879 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALS-DLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG----------RQIIII 879 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHH-HHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcC----------CeEEEE
Confidence 67899999999988888776420 011124 69999999999999999999999999998876 499999
Q ss_pred ccCHHHHHHhhchh
Q 016804 300 THQHSTIRRAVDRL 313 (382)
Q Consensus 300 THdl~~~~~~aDrv 313 (382)
||+-++.. .+|++
T Consensus 880 SH~eel~e-~~~~~ 892 (908)
T COG0419 880 SHVEELKE-RADVR 892 (908)
T ss_pred eChHHHHH-hCCeE
Confidence 99976654 55655
No 473
>PRK08149 ATP synthase SpaL; Validated
Probab=98.57 E-value=8.5e-08 Score=98.67 Aligned_cols=75 Identities=19% Similarity=0.370 Sum_probs=60.6
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEECCCCCChhhh--ccceEEEEecCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISDEEI--SGLRIGLVFQSA 176 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s---G~I~i~G~~i~~~~~~~~~--~~~~Ig~V~Q~~ 176 (382)
.+..+++++ +++.+||+++|+|+||+|||||+++|+++..++. |.|..+|+++......... ...++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 456799999 9999999999999999999999999999999988 9999999887543222111 123689998865
Q ss_pred C
Q 016804 177 A 177 (382)
Q Consensus 177 ~ 177 (382)
.
T Consensus 216 d 216 (428)
T PRK08149 216 D 216 (428)
T ss_pred C
Confidence 4
No 474
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.54 E-value=2.7e-07 Score=79.46 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=77.4
Q ss_pred EEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCEECCCCCChhhhccceEEEEecC-CCCCC----------------
Q 016804 120 VGIIGPSGTGKSTILKIIA--GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS-AALFD---------------- 180 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~--Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~-~~l~~---------------- 180 (382)
++|+|++|||||||++.|. +..++.+|++...- ..... .. .-.+++-+ |.+-.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~-~~~~~----~~---~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 73 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQ-LINFF----NV---NDKFRLVDLPGYGYAKVSKEVKEKWGKLIE 73 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcce-eEEEE----Ec---cCeEEEecCCCccccccCHHHHHHHHHHHH
Confidence 6899999999999999999 77777777643211 10000 00 00122222 11100
Q ss_pred -CCCHHHHHHhhHhhc-CCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 016804 181 -SLTVRENVGFLLYEN-SKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257 (382)
Q Consensus 181 -~lTV~eni~~~~~~~-~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLL 257 (382)
.++..+|+....... ...........+.++++..+.. -....+...+|++++++........... ....++++
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~--~~~~~~~~-- 149 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL--FEIDPPII-- 149 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh--ccCCCceE--
Confidence 011222222111110 0011112233455667766643 2233446678999988876655422100 00246666
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH
Q 016804 258 DEPTAGLDPIASTVVEDLIRSV 279 (382)
Q Consensus 258 DEPtagLD~~~~~~l~~lL~~l 279 (382)
|++++|.....++.+.|.++
T Consensus 150 --~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 150 --LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred --EEecCCCCCHHHHHHHHHHh
Confidence 99999999999999888764
No 475
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.53 E-value=2.5e-08 Score=92.39 Aligned_cols=29 Identities=38% Similarity=0.540 Sum_probs=27.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 476
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.52 E-value=2.4e-07 Score=106.01 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=36.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECC
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRG 152 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-~p~sG~I~i~G 152 (382)
-++++.++++++||+|++|+|||||++.+.+.+ ...+|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 346778899999999999999999999995554 45589998876
No 477
>PRK01889 GTPase RsgA; Reviewed
Probab=98.51 E-value=1.3e-07 Score=95.24 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=61.0
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
++.+.-.+.+|++++|+|+||+|||||++.|+|...++.|+|.+++..... .....++++++|+..+++ .....
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~-----tt~~~~l~~l~~~~~l~D-tpG~~ 258 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH-----TTTHRELHPLPSGGLLID-TPGMR 258 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc-----hhhhccEEEecCCCeecC-CCchh
Confidence 555566678999999999999999999999999999999999998753211 112336899999988886 35666
Q ss_pred HHHh
Q 016804 187 NVGF 190 (382)
Q Consensus 187 ni~~ 190 (382)
++.+
T Consensus 259 ~~~l 262 (356)
T PRK01889 259 ELQL 262 (356)
T ss_pred hhcc
Confidence 6654
No 478
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.50 E-value=1e-06 Score=97.51 Aligned_cols=48 Identities=25% Similarity=0.424 Sum_probs=42.8
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 250 VEPEVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD-~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
.+|+++++|||+..|| +..+..+.+.++.+++.+ .+++++||+++.+.
T Consensus 634 ~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~----------~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 634 GRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKN----------VSVIFATQSLADID 682 (811)
T ss_pred CCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHh
Confidence 4799999999999999 788999999999998776 48999999998765
No 479
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.48 E-value=3.1e-07 Score=82.82 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCc-ccccCCCCCCChHHHHHHH--HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 016804 206 LVKENLAAVGLK-GVEDRLPSELSGGMKKRVA--LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 206 ~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVa--IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~ 282 (382)
.+.++++..++. -..-.++..+|+||+|++. +++.+-. .+++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~------~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKF------GDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh------cCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345566666664 3445567789999999987 6666632 124443 99999999999999999887654
No 480
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.48 E-value=9.8e-08 Score=100.16 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=59.1
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
+.|+++.||...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 458999999889999999999999999999999999999999999999999999999987654
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.47 E-value=2e-07 Score=84.93 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=41.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~ 176 (382)
|++++|+||||||||||+++|++...+ .+.+.+..+...... . ....+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASA-G-SENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccch-h-HHhheeEcHHHH
Confidence 789999999999999999999999876 588888765532111 1 112478888864
No 482
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.47 E-value=1.3e-07 Score=86.88 Aligned_cols=40 Identities=38% Similarity=0.579 Sum_probs=34.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCEECC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA------------PDKGEVYIRGRKRA 156 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~------------p~sG~I~i~G~~i~ 156 (382)
++|++++|+||||||||||+++|++.++ |..|+ ++|.+..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~ 54 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYF 54 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeE
Confidence 5899999999999999999999999985 77788 4776643
No 483
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.45 E-value=4.3e-07 Score=81.69 Aligned_cols=67 Identities=33% Similarity=0.493 Sum_probs=45.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-----------CCEECCCCCChhhh----ccceEEEEecCCCCCCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI-----------RGRKRAGLISDEEI----SGLRIGLVFQSAALFDS 181 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i-----------~G~~i~~~~~~~~~----~~~~Ig~V~Q~~~l~~~ 181 (382)
|++++|+||||||||||++.|++.+.+. |.+.+ +|.+.... ..... ....++.++|...++..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIAL-STEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCcccccc-CHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65554 44443222 11111 12248888998777766
Q ss_pred CCHH
Q 016804 182 LTVR 185 (382)
Q Consensus 182 lTV~ 185 (382)
.++.
T Consensus 79 ~~~~ 82 (179)
T TIGR02322 79 IPAE 82 (179)
T ss_pred ChHH
Confidence 6653
No 484
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.45 E-value=1.5e-07 Score=96.98 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=57.3
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 91 ~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
.++.++++..| .+..+++++ |++.+||.++|+|+||+|||||+++|+|+..++.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47788899888 467899999 9999999999999999999999999999999999988887764
No 485
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.44 E-value=5.8e-07 Score=96.72 Aligned_cols=110 Identities=23% Similarity=0.315 Sum_probs=74.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccE--------EEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHH
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE--------VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN 187 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~--------I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~en 187 (382)
..+.+.|+||||||||||+++|.++.++..|. |.++|..+. + + .....|
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~---------------------d-~~~i~~ 230 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-W---------------------D-PREVTN 230 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-C---------------------C-HHHHhH
Confidence 35679999999999999999999998765443 555553321 0 0 000011
Q ss_pred HHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHH
Q 016804 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (382)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~ 267 (382)
..++. . .+...+.+.+.++.+|+.+....++.++||| +|+||| +..||+.
T Consensus 231 ~llg~-----~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG-----------------------vL~LDE-i~~Ld~~ 280 (615)
T TIGR02903 231 PLLGS-----V-HDPIYQGARRDLAETGVPEPKTGLVTDAHGG-----------------------VLFIDE-IGELDPL 280 (615)
T ss_pred HhcCC-----c-cHHHHHHHHHHHHHcCCCchhcCchhhcCCC-----------------------eEEEec-cccCCHH
Confidence 11211 1 1112233455688889988888888888888 589999 8999999
Q ss_pred HHHHHHHHHHH
Q 016804 268 ASTVVEDLIRS 278 (382)
Q Consensus 268 ~~~~l~~lL~~ 278 (382)
.+..+.+.|++
T Consensus 281 ~Q~~Ll~~Le~ 291 (615)
T TIGR02903 281 LQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHhh
Confidence 99998888865
No 486
>PRK14079 recF recombination protein F; Provisional
Probab=98.44 E-value=2.2e-07 Score=93.43 Aligned_cols=55 Identities=33% Similarity=0.244 Sum_probs=43.2
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 016804 225 SELSGGMKKRVALARSIIFD--NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~--~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l 279 (382)
..+|+|||+++++|+.|+.- ..+...+|+++|||||+++||+..+..+.+.|...
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~ 318 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL 318 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC
Confidence 47899999999999999700 00000269999999999999999999998888643
No 487
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.44 E-value=2.4e-07 Score=95.40 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=63.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hhh--ccceEEEEecCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEI--SGLRIGLVFQSAAL 178 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~~--~~~~Ig~V~Q~~~l 178 (382)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|+..|+.|.+...|++-...... ... .....+++++++..
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~ 210 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSD 210 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEecccc
Confidence 46799999 99999999999999999999999999999999999998866542221100 000 01236788998877
Q ss_pred CCCCCHHHHHHh
Q 016804 179 FDSLTVRENVGF 190 (382)
Q Consensus 179 ~~~lTV~eni~~ 190 (382)
+|.++.. +..+
T Consensus 211 ~p~~~r~-~~~~ 221 (422)
T TIGR02546 211 RPSLERL-KAAY 221 (422)
T ss_pred CCHHHHH-HHHH
Confidence 7755443 4433
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.42 E-value=1.6e-07 Score=93.37 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=57.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC----hhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~----~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~ 190 (382)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|...... ..+..+..+.+++|.....+..++++++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 5799999999999999999999999999988999998877532110 112223358999997666665566677654
No 489
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.39 E-value=4.1e-07 Score=90.71 Aligned_cols=57 Identities=26% Similarity=0.460 Sum_probs=49.7
Q ss_pred EEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 97 VYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 97 vs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
++..|. +..+++++ |.+.+||+++|+|+||+|||||+++|+|+..|+.|.+.+.|++
T Consensus 49 ~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 49 IDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred ceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 444453 46799999 9999999999999999999999999999999999988886653
No 490
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.38 E-value=4.2e-06 Score=83.89 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=31.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRG 152 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-p~sG~I~i~G 152 (382)
..++..+.|.||+||||||+++.|.+.+. +..|.|....
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 35688999999999999999999998765 3456665543
No 491
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.36 E-value=3.1e-07 Score=94.90 Aligned_cols=73 Identities=25% Similarity=0.424 Sum_probs=57.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEECCCCCChh-hhccceEEEEecCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISDE-EISGLRIGLVFQSAA 177 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s---G~I~i~G~~i~~~~~~~-~~~~~~Ig~V~Q~~~ 177 (382)
..+++.+ |++.+|++++|+|+||+|||||+++|+|+.+|+. |.|-++|+++....... ....+..++|+|+..
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4466666 9999999999999999999999999999999996 99999999874321111 111235889999865
No 492
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.34 E-value=4.8e-07 Score=88.88 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=51.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC--CCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~--p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
.++||.||||||||||+++|.+++. |++|.|.+-+.|-... ...... +.+++ |.....+.+++.+.+.+..
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~-~~~~l~--~~g~~-~~~g~P~s~D~~~l~~~L~ 135 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH-PNQVLK--ERNLM-KKKGFPESYDMHRLVKFLS 135 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc-cHHHHH--HcCCc-cccCCChhccHHHHHHHHH
Confidence 5899999999999999999999998 7889988866653221 222222 35654 7666677788888877643
No 493
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.32 E-value=8.3e-07 Score=90.58 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=48.2
Q ss_pred eEEEEeEEEEeCC-eeeeE-----------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 91 LIDCRNVYKSFGE-KHILR-----------GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~-----------~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
-++++||++.|++ +.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 4899999999965 56897 99999999999999999999999999999998753
No 494
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.31 E-value=8.6e-07 Score=83.55 Aligned_cols=69 Identities=28% Similarity=0.404 Sum_probs=48.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE----EEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE----VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~----I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~ 190 (382)
.+..++||.||||||||||++.|++++++++|. |.+|+... ...... ..|++++... ++.+++.+++.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~----~~~~~~--~~g~~~~~~~-~~~~d~~~~~~~ 103 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL----DNAVLD--AHGLRPRKGA-PETFDVAGLAAL 103 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC----CHHHHH--hcccccccCC-CCCCCHHHHHHH
Confidence 456799999999999999999999999999998 44454321 222211 3577766433 345677666655
No 495
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.29 E-value=8.4e-07 Score=91.73 Aligned_cols=51 Identities=27% Similarity=0.524 Sum_probs=47.8
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+..++.|.|.+.|+.
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 46799999 9999999999999999999999999999999999999998864
No 496
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.28 E-value=8.2e-07 Score=89.68 Aligned_cols=119 Identities=23% Similarity=0.201 Sum_probs=64.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC--Ccc-EEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG-~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~ 191 (382)
++|..+.|+||+||||||+|+.|++.+.+ .++ .|.....++ .+... .. ....+++.|...--...+-.+-+...
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~-~~-~~~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYD-EI-ETISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEecc-cc-ccccceeeeeeccccccCHHHHHHHH
Confidence 48899999999999999999999999843 344 554443332 22111 11 11257788864211112333333322
Q ss_pred HhhcCC---CCHHHHHHHHHHHHHH-------------cCCcccccCCCCCCChHHHHHHH
Q 016804 192 LYENSK---MRDEQISELVKENLAA-------------VGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 192 ~~~~~~---~~~~~~~~~v~~~L~~-------------~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
++.... ..+-...+.+..+++. -+..+...|....+|+|||--+.
T Consensus 209 LR~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~~ 269 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGRT 269 (358)
T ss_pred hccCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhHH
Confidence 221111 0111112334445555 33345566777889999875443
No 497
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.24 E-value=1.6e-06 Score=89.20 Aligned_cols=57 Identities=30% Similarity=0.462 Sum_probs=50.5
Q ss_pred EEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 98 YKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 98 s~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
+..| .+..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|+..
T Consensus 118 ~~~~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 118 RDPLETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred hhhccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 3444 346799999 99999999999999999999999999999999999999888753
No 498
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.24 E-value=1.3e-06 Score=89.76 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=51.9
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 92 I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
++-..++..+. +..+++ .+|.+.+|+.++|+|+||+|||||+++|+++.+|+.|.|.+.|+..
T Consensus 115 ~~R~~i~~~l~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 115 MSRARVGEPLDTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred hhccCcccccCCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 33444555553 455675 6999999999999999999999999999999999999999888753
No 499
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.22 E-value=1.7e-06 Score=88.79 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=53.4
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 92 I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
++-+.++..|. +..+++.+ |.+.+|++++|+|+||+|||||+++|+++..|+.+.+...|++
T Consensus 112 ~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 112 LKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred HhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 45566677774 46789999 9999999999999999999999999999999998887777764
No 500
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.21 E-value=8.1e-07 Score=67.88 Aligned_cols=39 Identities=33% Similarity=0.587 Sum_probs=31.4
Q ss_pred eEeeeEEEeC-CcEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 016804 107 LRGVSFKIRH-GEAVGIIGPSGTGKSTILKIIAGLLAPDK 145 (382)
Q Consensus 107 L~~vsl~i~~-Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s 145 (382)
+++.++++.+ |.++.|.||||||||||+.+|.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3445667775 67999999999999999999987776654
Done!