Query 016804
Match_columns 382
No_of_seqs 359 out of 2688
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 9.9E-60 3.4E-64 470.6 30.0 240 87-374 20-266 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 1.3E-59 4.5E-64 468.9 29.2 235 91-373 4-240 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 3.7E-59 1.3E-63 468.7 30.6 231 91-373 3-235 (381)
4 2olj_A Amino acid ABC transpor 100.0 3E-58 1E-62 441.2 31.4 236 90-373 23-260 (263)
5 1b0u_A Histidine permease; ABC 100.0 2.5E-58 8.5E-63 440.8 29.1 236 90-372 5-253 (262)
6 3tif_A Uncharacterized ABC tra 100.0 4.5E-58 1.5E-62 432.3 28.0 223 91-361 1-233 (235)
7 1z47_A CYSA, putative ABC-tran 100.0 7.1E-58 2.4E-62 455.9 29.6 234 88-373 11-247 (355)
8 2pcj_A ABC transporter, lipopr 100.0 1.3E-57 4.5E-62 426.0 28.4 218 90-356 3-222 (224)
9 3gfo_A Cobalt import ATP-bindi 100.0 3.3E-58 1.1E-62 443.6 24.9 225 89-362 5-233 (275)
10 2yyz_A Sugar ABC transporter, 100.0 1E-57 3.5E-62 455.4 29.2 231 91-373 3-235 (359)
11 4g1u_C Hemin import ATP-bindin 100.0 9.1E-58 3.1E-62 438.2 27.4 237 90-373 10-246 (266)
12 2it1_A 362AA long hypothetical 100.0 1.2E-57 4.1E-62 455.3 29.3 231 91-373 3-235 (362)
13 1ji0_A ABC transporter; ATP bi 100.0 2.2E-57 7.6E-62 428.5 28.7 224 89-362 4-228 (240)
14 1g6h_A High-affinity branched- 100.0 4.7E-58 1.6E-62 437.2 24.3 223 89-359 5-239 (257)
15 1g29_1 MALK, maltose transport 100.0 2.1E-57 7.1E-62 455.2 30.0 235 91-373 3-241 (372)
16 1v43_A Sugar-binding transport 100.0 2.2E-57 7.6E-62 454.9 29.3 231 91-373 11-243 (372)
17 1oxx_K GLCV, glucose, ABC tran 100.0 1.8E-57 6.1E-62 452.7 27.2 235 91-373 3-242 (353)
18 3d31_A Sulfate/molybdate ABC t 100.0 6.2E-57 2.1E-61 448.1 27.8 227 91-373 1-229 (348)
19 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-56 3.7E-61 428.7 27.7 221 90-361 14-234 (256)
20 2onk_A Molybdate/tungstate ABC 100.0 7.2E-56 2.5E-60 419.1 24.1 226 91-373 1-227 (240)
21 2ihy_A ABC transporter, ATP-bi 100.0 7.1E-56 2.4E-60 427.9 20.9 235 87-372 17-260 (279)
22 2yz2_A Putative ABC transporte 100.0 2.5E-55 8.4E-60 420.7 22.0 217 91-361 2-226 (266)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 2.7E-55 9.1E-60 416.7 21.8 220 91-358 3-229 (250)
24 2zu0_C Probable ATP-dependent 100.0 1.1E-54 3.6E-59 416.7 24.3 224 89-360 18-252 (267)
25 2nq2_C Hypothetical ABC transp 100.0 8.4E-54 2.9E-58 407.7 27.6 210 90-362 3-217 (253)
26 2ixe_A Antigen peptide transpo 100.0 2.2E-54 7.5E-59 415.6 21.4 227 90-369 15-252 (271)
27 2ff7_A Alpha-hemolysin translo 100.0 5.4E-54 1.8E-58 407.5 23.6 214 91-363 7-233 (247)
28 3nh6_A ATP-binding cassette SU 100.0 5.2E-54 1.8E-58 420.3 23.5 215 91-364 53-279 (306)
29 2qi9_C Vitamin B12 import ATP- 100.0 1.6E-53 5.6E-58 405.2 23.2 213 90-362 3-222 (249)
30 1mv5_A LMRA, multidrug resista 100.0 8.6E-54 2.9E-58 404.5 18.2 225 91-374 1-237 (243)
31 1sgw_A Putative ABC transporte 100.0 1.5E-53 5.1E-58 397.2 19.2 200 89-317 8-207 (214)
32 3b5x_A Lipid A export ATP-bind 100.0 1.2E-51 4E-56 433.7 27.8 276 5-363 280-568 (582)
33 2yl4_A ATP-binding cassette SU 100.0 2.4E-51 8.3E-56 432.3 29.6 277 7-362 279-570 (595)
34 2ghi_A Transport protein; mult 100.0 3.2E-52 1.1E-56 398.1 20.1 219 90-368 16-248 (260)
35 3b60_A Lipid A export ATP-bind 100.0 1.3E-51 4.3E-56 433.4 24.5 275 6-363 281-568 (582)
36 4a82_A Cystic fibrosis transme 100.0 1.3E-51 4.3E-56 433.3 24.3 276 8-365 279-567 (578)
37 2pjz_A Hypothetical protein ST 100.0 4.4E-52 1.5E-56 398.4 18.9 207 91-361 1-214 (263)
38 3gd7_A Fusion complex of cysti 100.0 1.6E-52 5.5E-57 422.0 15.0 223 90-373 18-254 (390)
39 2pze_A Cystic fibrosis transme 100.0 3.3E-51 1.1E-55 383.9 21.6 201 90-363 5-219 (229)
40 3qf4_A ABC transporter, ATP-bi 100.0 3.2E-51 1.1E-55 431.2 23.2 266 16-363 289-567 (587)
41 3qf4_B Uncharacterized ABC tra 100.0 1.1E-51 3.9E-56 435.4 19.6 263 19-364 306-580 (598)
42 2cbz_A Multidrug resistance-as 100.0 1.3E-50 4.6E-55 381.8 18.3 207 91-367 3-222 (237)
43 4f4c_A Multidrug resistance pr 100.0 1.2E-49 4E-54 452.2 18.6 253 37-364 1040-1306(1321)
44 4f4c_A Multidrug resistance pr 100.0 6.4E-48 2.2E-52 437.9 25.2 274 10-364 356-643 (1321)
45 2bbs_A Cystic fibrosis transme 100.0 8.7E-48 3E-52 373.5 17.2 197 90-362 39-247 (290)
46 3g5u_A MCG1178, multidrug resi 100.0 1.3E-46 4.3E-51 426.4 24.6 215 91-364 387-615 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 1.9E-46 6.4E-51 425.0 20.9 220 91-367 1030-1263(1284)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 4.8E-44 1.6E-48 373.5 22.5 207 88-362 284-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 3.3E-44 1.1E-48 379.6 21.2 207 88-362 354-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 8.5E-44 2.9E-48 371.7 21.1 191 88-313 266-456 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2.1E-42 7E-47 365.8 17.3 213 95-374 350-571 (608)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 8.2E-43 2.8E-47 364.2 9.5 196 92-315 21-230 (538)
53 3bk7_A ABC transporter ATP-bin 100.0 9.7E-43 3.3E-47 368.3 9.4 195 91-313 83-298 (607)
54 3ux8_A Excinuclease ABC, A sub 100.0 2.9E-41 9.9E-46 359.9 15.4 217 103-374 30-310 (670)
55 2iw3_A Elongation factor 3A; a 100.0 7.2E-41 2.4E-45 368.1 14.8 206 88-356 668-981 (986)
56 2iw3_A Elongation factor 3A; a 100.0 1.6E-39 5.6E-44 357.4 23.7 197 91-361 435-634 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 8.5E-39 2.9E-43 340.9 17.5 216 104-372 335-650 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 1.6E-38 5.4E-43 336.2 10.0 193 96-314 82-292 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-38 1.2E-42 329.3 9.7 191 95-315 3-209 (538)
60 3pih_A Uvrabc system protein A 100.0 1.4E-35 4.7E-40 325.2 20.0 227 91-374 589-914 (916)
61 2vf7_A UVRA2, excinuclease ABC 100.0 1.2E-35 4.2E-40 323.2 17.5 231 89-372 500-837 (842)
62 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.2E-39 4E-44 334.7 -17.2 212 89-375 116-351 (460)
63 2r6f_A Excinuclease ABC subuni 100.0 2.7E-35 9.1E-40 322.5 15.7 227 89-372 627-952 (972)
64 2ygr_A Uvrabc system protein A 100.0 8.4E-35 2.9E-39 319.4 15.6 232 89-377 645-975 (993)
65 4aby_A DNA repair protein RECN 100.0 6.3E-33 2.1E-37 277.3 16.8 188 104-313 48-365 (415)
66 3b85_A Phosphate starvation-in 100.0 4.6E-34 1.6E-38 264.4 -15.2 151 99-308 8-163 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 3.2E-29 1.1E-33 249.7 14.9 85 221-353 274-364 (365)
68 1e69_A Chromosome segregation 100.0 1E-29 3.5E-34 248.2 8.1 197 92-313 6-291 (322)
69 4gp7_A Metallophosphoesterase; 100.0 7.2E-30 2.5E-34 227.4 4.7 148 109-309 1-165 (171)
70 1znw_A Guanylate kinase, GMP k 100.0 4.7E-32 1.6E-36 247.8 -11.7 177 104-316 9-201 (207)
71 1tq4_A IIGP1, interferon-induc 99.9 3.4E-31 1.2E-35 268.5 -10.3 180 104-313 36-247 (413)
72 3b9q_A Chloroplast SRP recepto 99.9 2.3E-29 7.7E-34 245.2 -4.7 168 97-301 80-255 (302)
73 1ye8_A Protein THEP1, hypothet 99.9 4.3E-28 1.5E-32 218.8 1.1 142 119-313 2-153 (178)
74 2dpy_A FLII, flagellum-specifi 99.9 9.5E-30 3.3E-34 259.7 -12.7 196 90-360 130-342 (438)
75 1z6g_A Guanylate kinase; struc 99.9 4.6E-30 1.6E-34 237.6 -17.1 180 105-313 11-204 (218)
76 2v9p_A Replication protein E1; 99.9 4.7E-31 1.6E-35 257.8 -25.6 208 21-360 56-264 (305)
77 2og2_A Putative signal recogni 99.9 1.1E-27 3.8E-32 238.7 -3.1 157 108-301 148-312 (359)
78 2pt7_A CAG-ALFA; ATPase, prote 99.9 8.7E-27 3E-31 229.4 0.2 138 94-317 151-288 (330)
79 3sop_A Neuronal-specific septi 99.9 1.4E-27 4.8E-32 228.9 -5.8 148 119-304 4-151 (270)
80 3aez_A Pantothenate kinase; tr 99.9 7.9E-29 2.7E-33 242.4 -16.7 173 91-313 43-239 (312)
81 2o8b_B DNA mismatch repair pro 99.9 3.6E-25 1.2E-29 245.8 3.7 162 89-316 748-925 (1022)
82 2obl_A ESCN; ATPase, hydrolase 99.9 2.8E-26 9.7E-31 227.5 -4.8 195 90-360 44-253 (347)
83 2o5v_A DNA replication and rep 99.9 8.5E-24 2.9E-28 210.7 12.5 84 223-360 261-354 (359)
84 1tf7_A KAIC; homohexamer, hexa 99.9 3.1E-27 1.1E-31 245.2 -16.9 181 90-317 11-208 (525)
85 3pih_A Uvrabc system protein A 99.9 5.1E-24 1.7E-28 233.8 7.6 177 132-376 383-575 (916)
86 1cr0_A DNA primase/helicase; R 99.9 1.5E-24 5E-29 207.9 2.9 180 104-317 22-233 (296)
87 3qkt_A DNA double-strand break 99.9 6.7E-23 2.3E-27 201.5 14.5 79 219-315 241-325 (339)
88 1tf7_A KAIC; homohexamer, hexa 99.9 3.4E-24 1.2E-28 222.3 1.8 169 91-317 257-441 (525)
89 2jeo_A Uridine-cytidine kinase 99.9 2E-24 6.9E-29 202.2 -0.7 164 101-312 9-175 (245)
90 4ad8_A DNA repair protein RECN 99.9 2.2E-22 7.6E-27 208.4 11.3 72 223-313 393-467 (517)
91 2ehv_A Hypothetical protein PH 99.9 1.8E-24 6.2E-29 199.5 -4.3 183 91-317 6-206 (251)
92 2r6f_A Excinuclease ABC subuni 99.9 1.3E-21 4.4E-26 214.6 15.1 145 181-374 451-612 (972)
93 2vf7_A UVRA2, excinuclease ABC 99.9 4.8E-22 1.6E-26 216.6 10.3 192 125-374 270-487 (842)
94 2qnr_A Septin-2, protein NEDD5 99.9 1.6E-24 5.4E-29 210.4 -8.7 165 95-304 2-168 (301)
95 2ygr_A Uvrabc system protein A 99.9 1.6E-21 5.4E-26 214.5 13.1 148 179-375 466-630 (993)
96 3szr_A Interferon-induced GTP- 99.8 3.4E-24 1.2E-28 226.6 -9.3 171 90-306 9-199 (608)
97 2eyu_A Twitching motility prot 99.8 6.2E-23 2.1E-27 195.7 -0.2 141 92-318 6-147 (261)
98 1rj9_A FTSY, signal recognitio 99.8 4.1E-23 1.4E-27 201.3 -2.4 154 116-304 101-259 (304)
99 3thx_A DNA mismatch repair pro 99.8 6E-21 2E-25 210.1 11.7 150 90-313 630-794 (934)
100 1ewq_A DNA mismatch repair pro 99.8 1.2E-21 4.2E-26 211.8 5.2 145 91-310 550-704 (765)
101 4a74_A DNA repair and recombin 99.8 3.7E-22 1.3E-26 181.8 0.3 151 113-314 21-195 (231)
102 1w1w_A Structural maintenance 99.8 2.2E-20 7.7E-25 188.7 12.8 76 224-313 331-406 (430)
103 3asz_A Uridine kinase; cytidin 99.8 8E-24 2.8E-28 192.1 -11.4 146 114-304 3-162 (211)
104 3thx_B DNA mismatch repair pro 99.8 6.5E-21 2.2E-25 209.4 7.0 156 91-313 640-805 (918)
105 1pui_A ENGB, probable GTP-bind 99.8 9.1E-23 3.1E-27 183.6 -7.7 173 91-283 3-200 (210)
106 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 8.3E-20 2.8E-24 160.5 9.0 76 220-313 51-132 (148)
107 1wb9_A DNA mismatch repair pro 99.8 1.8E-20 6E-25 203.7 4.3 155 91-313 577-739 (800)
108 2i3b_A HCR-ntpase, human cance 99.8 3.4E-22 1.2E-26 182.1 -9.4 127 117-277 1-133 (189)
109 2qag_C Septin-7; cell cycle, c 99.8 4.1E-21 1.4E-25 194.9 -4.7 165 90-304 10-178 (418)
110 1pzn_A RAD51, DNA repair and r 99.8 8.7E-21 3E-25 187.8 -2.5 154 105-308 118-291 (349)
111 2w0m_A SSO2452; RECA, SSPF, un 99.8 3.1E-19 1.1E-23 161.9 6.3 167 104-317 9-190 (235)
112 1nlf_A Regulatory protein REPA 99.7 4.2E-18 1.4E-22 162.0 11.8 154 113-307 26-185 (279)
113 1lw7_A Transcriptional regulat 99.7 9.8E-23 3.4E-27 201.9 -21.5 164 106-315 157-340 (365)
114 3jvv_A Twitching mobility prot 99.7 8.3E-19 2.8E-23 174.5 5.4 142 96-317 93-244 (356)
115 2qag_B Septin-6, protein NEDD5 99.7 5.4E-20 1.9E-24 187.0 -4.5 181 91-303 16-219 (427)
116 2qm8_A GTPase/ATPase; G protei 99.7 1.5E-21 5.1E-26 192.5 -19.6 185 91-281 29-260 (337)
117 2bbw_A Adenylate kinase 4, AK4 99.7 2.2E-20 7.5E-25 174.4 -11.1 145 116-282 26-199 (246)
118 1zp6_A Hypothetical protein AT 99.7 9.7E-21 3.3E-25 168.7 -12.9 141 113-281 5-149 (191)
119 2bdt_A BH3686; alpha-beta prot 99.7 3.1E-20 1.1E-24 165.9 -11.7 172 117-360 2-182 (189)
120 1s96_A Guanylate kinase, GMP k 99.7 1.1E-18 3.7E-23 162.3 -2.6 129 112-308 11-145 (219)
121 3kta_B Chromosome segregation 99.7 9.2E-17 3.1E-21 144.6 10.1 79 220-313 58-136 (173)
122 2rcn_A Probable GTPase ENGC; Y 99.7 7.7E-18 2.6E-22 167.7 3.3 123 106-242 205-329 (358)
123 1htw_A HI0065; nucleotide-bind 99.7 8.7E-20 3E-24 161.8 -10.1 92 92-192 8-100 (158)
124 2yhs_A FTSY, cell division pro 99.7 7.9E-19 2.7E-23 181.2 -5.8 166 107-309 283-454 (503)
125 2gza_A Type IV secretion syste 99.7 5.8E-18 2E-22 168.2 0.3 149 93-317 137-300 (361)
126 3e70_C DPA, signal recognition 99.7 4.9E-18 1.7E-22 167.2 -0.9 149 114-302 126-278 (328)
127 2cvh_A DNA repair and recombin 99.7 9.2E-17 3.1E-21 145.2 6.6 152 105-317 7-183 (220)
128 2yv5_A YJEQ protein; hydrolase 99.6 5.9E-18 2E-22 164.2 -2.8 123 113-239 161-300 (302)
129 1nij_A Hypothetical protein YJ 99.6 2.2E-20 7.5E-25 182.3 -20.9 159 118-307 5-193 (318)
130 2ewv_A Twitching motility prot 99.6 7.6E-17 2.6E-21 160.9 3.4 131 105-317 126-257 (372)
131 1n0w_A DNA repair protein RAD5 99.6 3.3E-16 1.1E-20 143.6 4.1 42 113-154 20-68 (243)
132 2f1r_A Molybdopterin-guanine d 99.6 1.2E-17 4E-22 150.0 -7.4 139 118-283 3-163 (171)
133 1u0l_A Probable GTPase ENGC; p 99.6 2.3E-17 8E-22 159.7 -6.3 111 112-229 164-294 (301)
134 1p9r_A General secretion pathw 99.6 7E-19 2.4E-23 178.5 -18.6 152 91-256 143-314 (418)
135 3ec2_A DNA replication protein 99.5 1.9E-15 6.5E-20 133.9 3.7 112 111-304 32-144 (180)
136 3auy_A DNA double-strand break 99.5 1.1E-14 3.7E-19 144.6 9.1 73 222-313 276-355 (371)
137 1in4_A RUVB, holliday junction 99.5 3.6E-18 1.2E-22 167.1 -18.1 179 92-313 19-212 (334)
138 2oap_1 GSPE-2, type II secreti 99.5 2E-17 6.8E-22 171.7 -14.0 175 104-312 247-459 (511)
139 1sxj_E Activator 1 40 kDa subu 99.5 1.1E-14 3.9E-19 141.2 5.7 138 119-305 38-176 (354)
140 1udx_A The GTP-binding protein 99.5 4.7E-15 1.6E-19 150.3 2.2 168 107-313 147-319 (416)
141 1odf_A YGR205W, hypothetical 3 99.5 7.7E-16 2.6E-20 148.9 -3.6 127 115-267 29-168 (290)
142 2kjq_A DNAA-related protein; s 99.5 2.2E-14 7.4E-19 125.3 4.9 103 106-313 30-139 (149)
143 1sq5_A Pantothenate kinase; P- 99.5 1.1E-16 3.9E-21 155.2 -11.8 93 91-192 37-153 (308)
144 3lda_A DNA repair protein RAD5 99.5 1.5E-14 5.1E-19 146.0 3.0 132 113-303 174-328 (400)
145 2x8a_A Nuclear valosin-contain 99.4 6.2E-18 2.1E-22 161.8 -21.1 148 101-276 30-190 (274)
146 1t9h_A YLOQ, probable GTPase E 99.4 3E-15 1E-19 146.2 -3.2 119 112-234 168-303 (307)
147 3c8u_A Fructokinase; YP_612366 99.4 8.7E-16 3E-20 139.9 -8.3 139 114-281 19-171 (208)
148 1lvg_A Guanylate kinase, GMP k 99.4 8.8E-17 3E-21 146.1 -15.8 161 115-309 2-180 (198)
149 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 2.8E-16 9.4E-21 158.3 -16.4 158 113-314 16-193 (392)
150 1ls1_A Signal recognition part 99.3 1.3E-12 4.3E-17 126.4 4.0 133 92-280 77-210 (295)
151 1vma_A Cell division protein F 99.3 3.1E-12 1E-16 124.7 5.9 114 109-280 96-212 (306)
152 3euj_A Chromosome partition pr 99.3 2.1E-12 7.2E-17 133.1 4.3 61 94-157 9-69 (483)
153 2px0_A Flagellar biosynthesis 99.2 1.7E-11 5.7E-16 118.7 9.6 132 115-313 103-236 (296)
154 3lnc_A Guanylate kinase, GMP k 99.2 2.5E-13 8.6E-18 125.2 -3.5 183 104-313 14-205 (231)
155 1iy2_A ATP-dependent metallopr 99.2 3.9E-16 1.3E-20 148.1 -23.2 134 91-243 49-186 (278)
156 1ixz_A ATP-dependent metallopr 99.2 3.4E-16 1.2E-20 146.0 -23.8 144 91-262 25-172 (254)
157 3tr0_A Guanylate kinase, GMP k 99.2 4.4E-13 1.5E-17 120.0 -2.9 74 111-190 1-74 (205)
158 2ius_A DNA translocase FTSK; n 99.2 2.1E-13 7.1E-18 141.5 -5.8 194 109-330 159-375 (512)
159 1qhl_A Protein (cell division 99.2 5.5E-13 1.9E-17 124.8 -3.7 77 91-175 9-91 (227)
160 2dr3_A UPF0273 protein PH0284; 99.2 2.7E-12 9.2E-17 117.5 -0.7 48 106-153 11-60 (247)
161 3k1j_A LON protease, ATP-depen 99.1 4.1E-13 1.4E-17 141.4 -8.7 167 95-278 38-227 (604)
162 2r6a_A DNAB helicase, replicat 99.1 5.9E-11 2E-15 120.8 7.2 180 104-317 190-397 (454)
163 2zr9_A Protein RECA, recombina 99.1 6.5E-11 2.2E-15 117.1 5.6 30 113-142 57-86 (349)
164 1oix_A RAS-related protein RAB 99.0 7.6E-11 2.6E-15 105.1 3.8 37 119-155 31-78 (191)
165 4eun_A Thermoresistant glucoki 98.9 4.3E-11 1.5E-15 107.9 -4.2 75 109-190 21-95 (200)
166 2f9l_A RAB11B, member RAS onco 98.9 7.9E-10 2.7E-14 98.6 3.4 37 235-280 130-166 (199)
167 3nwj_A ATSK2; P loop, shikimat 98.8 1.5E-10 5.2E-15 109.6 -2.2 52 90-141 16-72 (250)
168 3kta_A Chromosome segregation 98.8 1E-09 3.4E-14 96.7 2.6 135 93-235 3-151 (182)
169 4e22_A Cytidylate kinase; P-lo 98.8 3.2E-10 1.1E-14 106.5 -0.8 81 104-188 17-113 (252)
170 2qtf_A Protein HFLX, GTP-bindi 98.8 4.7E-10 1.6E-14 111.6 -0.5 144 116-282 177-354 (364)
171 1svm_A Large T antigen; AAA+ f 98.8 1.4E-11 4.7E-16 123.4 -13.3 139 104-262 156-312 (377)
172 3uie_A Adenylyl-sulfate kinase 98.7 3.9E-10 1.3E-14 101.6 -3.6 60 95-155 3-64 (200)
173 3hr8_A Protein RECA; alpha and 98.7 7.5E-09 2.6E-13 102.9 3.7 70 113-187 57-127 (356)
174 1zu4_A FTSY; GTPase, signal re 98.7 2E-09 6.9E-14 105.3 -1.1 83 107-189 95-185 (320)
175 2dhr_A FTSH; AAA+ protein, hex 98.6 6.7E-11 2.3E-15 122.4 -12.7 144 91-262 40-187 (499)
176 3a00_A Guanylate kinase, GMP k 98.6 7.5E-09 2.6E-13 92.2 2.0 32 117-148 1-32 (186)
177 2e87_A Hypothetical protein PH 98.6 2.2E-08 7.4E-13 98.6 4.8 126 116-305 166-294 (357)
178 2xau_A PRE-mRNA-splicing facto 98.6 4.6E-08 1.6E-12 106.0 7.7 81 223-320 187-269 (773)
179 2j41_A Guanylate kinase; GMP, 98.6 2.2E-08 7.7E-13 89.1 4.2 35 112-146 1-35 (207)
180 2ce7_A Cell division protein F 98.6 3.2E-08 1.1E-12 101.9 5.1 151 94-335 28-188 (476)
181 3t34_A Dynamin-related protein 98.5 1.3E-07 4.5E-12 92.9 8.1 176 104-301 24-212 (360)
182 1fnn_A CDC6P, cell division co 98.5 6E-07 2E-11 87.1 10.9 51 251-312 125-178 (389)
183 4a1f_A DNAB helicase, replicat 98.4 3.7E-07 1.2E-11 90.1 8.8 129 106-301 35-164 (338)
184 1kgd_A CASK, peripheral plasma 98.4 5.9E-08 2E-12 86.0 2.3 36 116-151 4-40 (180)
185 1jjv_A Dephospho-COA kinase; P 98.4 7.8E-09 2.7E-13 92.9 -3.7 122 119-313 4-127 (206)
186 3vaa_A Shikimate kinase, SK; s 98.4 1.3E-07 4.5E-12 84.8 3.5 38 104-141 12-49 (199)
187 2dy1_A Elongation factor G; tr 98.4 3E-08 1E-12 105.7 -1.3 135 111-306 3-139 (665)
188 2vp4_A Deoxynucleoside kinase; 98.3 1.1E-07 3.6E-12 87.7 1.6 41 111-155 14-54 (230)
189 3tqc_A Pantothenate kinase; bi 98.3 1.9E-08 6.6E-13 98.5 -4.5 49 95-143 64-118 (321)
190 1rz3_A Hypothetical protein rb 98.3 8.7E-08 3E-12 86.4 -0.1 43 113-155 18-60 (201)
191 3ney_A 55 kDa erythrocyte memb 98.2 2.9E-07 1E-11 84.2 2.3 31 112-142 14-44 (197)
192 1ega_A Protein (GTP-binding pr 98.2 2.8E-07 9.7E-12 88.7 2.0 154 116-313 7-169 (301)
193 3tau_A Guanylate kinase, GMP k 98.2 5.1E-07 1.7E-11 81.8 3.5 36 115-150 6-42 (208)
194 3kl4_A SRP54, signal recogniti 98.2 2.9E-06 9.8E-11 86.3 9.0 39 116-154 96-134 (433)
195 2p67_A LAO/AO transport system 98.2 8.1E-09 2.8E-13 101.3 -9.6 65 91-155 30-94 (341)
196 1knq_A Gluconate kinase; ALFA/ 98.2 3.2E-07 1.1E-11 80.0 1.5 37 115-155 6-42 (175)
197 3cr8_A Sulfate adenylyltranfer 98.2 3.3E-07 1.1E-11 95.9 1.2 43 113-155 365-409 (552)
198 1sxj_C Activator 1 40 kDa subu 98.1 3.1E-09 1.1E-13 103.3 -13.9 56 97-152 24-81 (340)
199 2qt1_A Nicotinamide riboside k 98.1 1.2E-06 4.2E-11 78.6 3.8 31 112-142 16-46 (207)
200 3m6a_A ATP-dependent protease 98.0 8.1E-08 2.8E-12 100.1 -6.7 62 92-154 84-145 (543)
201 3bh0_A DNAB-like replicative h 98.0 1.5E-05 5E-10 77.1 9.6 122 105-282 56-177 (315)
202 3lxx_A GTPase IMAP family memb 98.0 8E-05 2.8E-09 68.2 13.9 29 119-147 31-59 (239)
203 1kag_A SKI, shikimate kinase I 98.0 2.2E-06 7.4E-11 74.2 2.6 33 116-152 3-35 (173)
204 2qby_A CDC6 homolog 1, cell di 97.9 1.5E-06 5.1E-11 83.7 -0.2 30 115-144 43-72 (386)
205 1cke_A CK, MSSA, protein (cyti 97.9 1.4E-06 4.9E-11 78.7 -0.4 59 117-176 5-74 (227)
206 2pez_A Bifunctional 3'-phospho 97.9 2.6E-06 9E-11 74.6 1.2 39 115-154 3-43 (179)
207 1mky_A Probable GTP-binding pr 97.9 1E-05 3.6E-10 81.6 5.2 166 119-309 182-371 (439)
208 2z4s_A Chromosomal replication 97.8 7.8E-06 2.7E-10 82.8 4.2 42 251-302 194-236 (440)
209 2ffh_A Protein (FFH); SRP54, s 97.8 9.9E-07 3.4E-11 89.5 -2.9 59 94-156 79-137 (425)
210 1ypw_A Transitional endoplasmi 97.8 4.2E-06 1.4E-10 91.1 1.7 31 112-142 233-263 (806)
211 3ice_A Transcription terminati 97.8 2E-06 6.8E-11 86.6 -0.9 51 91-141 133-198 (422)
212 2www_A Methylmalonic aciduria 97.8 3.5E-06 1.2E-10 82.9 0.8 42 115-156 72-113 (349)
213 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 1.1E-05 3.8E-10 69.8 3.8 30 109-139 16-45 (149)
214 1v5w_A DMC1, meiotic recombina 97.8 7.6E-05 2.6E-09 73.0 9.9 28 113-140 118-145 (343)
215 4eaq_A DTMP kinase, thymidylat 97.8 7.8E-06 2.7E-10 75.6 2.6 44 107-151 13-59 (229)
216 3b9p_A CG5977-PA, isoform A; A 97.8 3.1E-05 1.1E-09 73.0 6.3 26 116-141 53-78 (297)
217 1m7g_A Adenylylsulfate kinase; 97.7 6.3E-06 2.2E-10 74.4 0.9 43 112-154 20-64 (211)
218 1j8m_F SRP54, signal recogniti 97.7 9.4E-07 3.2E-11 85.4 -5.7 60 94-156 77-137 (297)
219 1m2o_B GTP-binding protein SAR 97.7 3.3E-05 1.1E-09 68.1 4.7 34 105-139 12-45 (190)
220 1f6b_A SAR1; gtpases, N-termin 97.7 7.5E-06 2.6E-10 72.9 0.5 55 98-153 6-69 (198)
221 2qag_A Septin-2, protein NEDD5 97.7 2.6E-06 9.1E-11 84.2 -2.9 57 91-153 17-73 (361)
222 2gj8_A MNME, tRNA modification 97.6 3.9E-05 1.3E-09 66.6 4.8 28 115-142 2-29 (172)
223 3qks_A DNA double-strand break 97.5 5.6E-05 1.9E-09 68.5 4.5 29 109-138 16-44 (203)
224 2z43_A DNA repair and recombin 97.5 0.00028 9.7E-09 68.2 9.6 28 113-140 103-130 (324)
225 1y63_A LMAJ004144AAA protein; 97.5 4.6E-05 1.6E-09 67.3 3.0 32 109-140 2-33 (184)
226 2yvu_A Probable adenylyl-sulfa 97.5 2.8E-05 9.7E-10 68.4 1.5 37 113-149 9-45 (186)
227 2wji_A Ferrous iron transport 97.5 0.00013 4.6E-09 62.4 5.6 24 119-142 5-28 (165)
228 2if2_A Dephospho-COA kinase; a 97.5 5.1E-05 1.8E-09 67.5 3.0 22 119-140 3-24 (204)
229 2wjg_A FEOB, ferrous iron tran 97.4 8.3E-05 2.8E-09 64.4 4.1 22 119-140 9-30 (188)
230 2qor_A Guanylate kinase; phosp 97.4 7.1E-05 2.4E-09 67.1 3.1 30 113-142 8-37 (204)
231 3auy_A DNA double-strand break 97.4 0.00016 5.4E-09 71.3 5.6 44 92-138 3-46 (371)
232 2w58_A DNAI, primosome compone 97.4 0.00036 1.2E-08 61.8 7.3 25 118-142 55-79 (202)
233 2ohf_A Protein OLA1, GTP-bindi 97.3 9.2E-05 3.2E-09 74.4 3.5 41 113-153 18-69 (396)
234 1u94_A RECA protein, recombina 97.3 0.00024 8.3E-09 70.2 6.4 27 114-140 60-86 (356)
235 1l8q_A Chromosomal replication 97.3 0.00065 2.2E-08 64.9 9.1 33 251-283 98-131 (324)
236 2q6t_A DNAB replication FORK h 97.2 0.0011 3.8E-08 66.8 10.4 37 105-141 188-224 (444)
237 2zej_A Dardarin, leucine-rich 97.2 0.00016 5.3E-09 63.1 3.2 26 119-144 4-29 (184)
238 1np6_A Molybdopterin-guanine d 97.2 0.00012 4.1E-09 65.2 2.1 38 117-154 6-46 (174)
239 3t61_A Gluconokinase; PSI-biol 97.1 0.00017 6E-09 64.1 2.8 33 117-153 18-50 (202)
240 3cm0_A Adenylate kinase; ATP-b 97.1 0.00019 6.4E-09 62.6 2.9 25 115-139 2-26 (186)
241 1q3t_A Cytidylate kinase; nucl 97.1 0.00027 9.1E-09 64.8 3.4 36 114-149 13-51 (236)
242 2p5t_B PEZT; postsegregational 97.0 0.00022 7.6E-09 66.3 2.6 40 113-154 28-67 (253)
243 2ga8_A Hypothetical 39.9 kDa p 97.0 6E-05 2.1E-09 74.8 -1.5 37 105-141 10-48 (359)
244 3h4m_A Proteasome-activating n 97.0 0.00068 2.3E-08 63.2 5.8 28 114-141 48-75 (285)
245 3kb2_A SPBC2 prophage-derived 97.0 0.00034 1.1E-08 59.7 3.4 23 119-141 3-25 (173)
246 3r20_A Cytidylate kinase; stru 97.0 0.00013 4.6E-09 68.1 0.5 32 117-148 9-43 (233)
247 1lv7_A FTSH; alpha/beta domain 97.0 0.00023 7.9E-09 65.7 2.0 34 107-142 37-70 (257)
248 1qhx_A CPT, protein (chloramph 96.9 0.00046 1.6E-08 59.6 3.6 26 117-142 3-28 (178)
249 1gtv_A TMK, thymidylate kinase 96.9 0.00015 5E-09 64.6 0.1 30 119-148 2-31 (214)
250 2jaq_A Deoxyguanosine kinase; 96.9 0.00047 1.6E-08 60.5 3.2 23 119-141 2-24 (205)
251 1kht_A Adenylate kinase; phosp 96.9 0.00057 2E-08 59.3 3.5 25 117-141 3-27 (192)
252 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00028 9.7E-09 69.6 1.6 47 251-307 262-311 (392)
253 3lw7_A Adenylate kinase relate 96.8 0.00058 2E-08 57.8 3.1 19 119-137 3-21 (179)
254 1uf9_A TT1252 protein; P-loop, 96.8 0.0005 1.7E-08 60.4 2.8 31 117-152 8-38 (203)
255 1vht_A Dephospho-COA kinase; s 96.8 0.00061 2.1E-08 61.2 3.4 32 116-152 3-34 (218)
256 3ihw_A Centg3; RAS, centaurin, 96.8 0.0013 4.5E-08 57.4 5.3 35 119-153 22-65 (184)
257 2rhm_A Putative kinase; P-loop 96.7 0.00071 2.4E-08 59.0 3.1 26 115-140 3-28 (193)
258 3trf_A Shikimate kinase, SK; a 96.7 0.00097 3.3E-08 58.0 3.5 26 116-141 4-29 (185)
259 2v54_A DTMP kinase, thymidylat 96.6 0.0011 3.7E-08 58.4 3.6 26 116-141 3-28 (204)
260 1jal_A YCHF protein; nucleotid 96.6 0.0014 4.8E-08 65.1 4.8 36 117-152 2-48 (363)
261 3iij_A Coilin-interacting nucl 96.6 0.00093 3.2E-08 58.1 3.1 25 115-139 9-33 (180)
262 2ze6_A Isopentenyl transferase 96.6 0.00086 2.9E-08 62.6 3.0 23 119-141 3-25 (253)
263 1via_A Shikimate kinase; struc 96.6 0.00096 3.3E-08 57.8 3.0 23 119-141 6-28 (175)
264 3cf0_A Transitional endoplasmi 96.6 0.00073 2.5E-08 64.4 2.4 30 112-141 44-73 (301)
265 1ly1_A Polynucleotide kinase; 96.6 0.0011 3.7E-08 56.9 3.3 31 118-151 3-33 (181)
266 1ko7_A HPR kinase/phosphatase; 96.6 0.0019 6.5E-08 63.0 5.3 49 103-152 131-183 (314)
267 1ex7_A Guanylate kinase; subst 96.6 0.001 3.5E-08 60.0 3.0 22 120-141 4-25 (186)
268 2plr_A DTMP kinase, probable t 96.6 0.0012 4.2E-08 58.1 3.5 27 116-142 3-29 (213)
269 2c95_A Adenylate kinase 1; tra 96.5 0.0012 4.3E-08 57.5 3.4 27 115-141 7-33 (196)
270 2wwf_A Thymidilate kinase, put 96.5 0.0013 4.4E-08 58.3 3.4 26 115-140 8-33 (212)
271 1fzq_A ADP-ribosylation factor 96.5 0.0013 4.4E-08 57.1 3.3 23 119-141 18-40 (181)
272 1gvn_B Zeta; postsegregational 96.5 0.0012 4.1E-08 62.9 3.2 36 115-152 31-66 (287)
273 1tev_A UMP-CMP kinase; ploop, 96.5 0.0014 4.9E-08 56.8 3.3 24 117-140 3-26 (196)
274 1nn5_A Similar to deoxythymidy 96.5 0.0015 5E-08 58.0 3.4 27 114-140 6-32 (215)
275 1nks_A Adenylate kinase; therm 96.4 0.0014 4.8E-08 56.7 3.1 23 119-141 3-25 (194)
276 3k53_A Ferrous iron transport 96.4 0.0014 4.7E-08 61.3 3.1 45 260-313 144-188 (271)
277 3ake_A Cytidylate kinase; CMP 96.4 0.0016 5.4E-08 57.4 3.1 23 119-141 4-26 (208)
278 2z0h_A DTMP kinase, thymidylat 96.4 0.0017 5.8E-08 56.7 3.3 23 119-141 2-24 (197)
279 4fcw_A Chaperone protein CLPB; 96.3 0.0013 4.3E-08 61.9 2.1 31 118-148 48-78 (311)
280 2vli_A Antibiotic resistance p 96.3 0.0015 5.1E-08 56.5 2.4 26 116-141 4-29 (183)
281 2bwj_A Adenylate kinase 5; pho 96.3 0.0021 7.2E-08 56.2 3.2 28 114-141 9-36 (199)
282 2ged_A SR-beta, signal recogni 96.2 0.0022 7.4E-08 55.6 3.1 25 118-142 49-73 (193)
283 1xjc_A MOBB protein homolog; s 96.2 0.0022 7.5E-08 57.0 3.1 26 118-143 5-30 (169)
284 3llm_A ATP-dependent RNA helic 96.2 0.0015 5.1E-08 59.7 2.0 115 115-270 74-196 (235)
285 1z2a_A RAS-related protein RAB 96.2 0.0023 7.7E-08 53.6 2.9 23 119-141 7-29 (168)
286 2pbr_A DTMP kinase, thymidylat 96.2 0.0026 9E-08 55.2 3.3 23 119-141 2-24 (195)
287 2nzj_A GTP-binding protein REM 96.2 0.0025 8.7E-08 53.8 3.1 23 119-141 6-28 (175)
288 1zd8_A GTP:AMP phosphotransfer 96.2 0.0026 8.8E-08 57.6 3.3 27 115-141 5-31 (227)
289 1aky_A Adenylate kinase; ATP:A 96.2 0.0029 1E-07 56.9 3.6 26 116-141 3-28 (220)
290 3fb4_A Adenylate kinase; psych 96.2 0.0026 9.1E-08 56.7 3.3 22 119-140 2-23 (216)
291 2erx_A GTP-binding protein DI- 96.2 0.0026 9E-08 53.3 3.1 22 119-140 5-26 (172)
292 2ce2_X GTPase HRAS; signaling 96.2 0.0023 7.8E-08 53.1 2.7 23 119-141 5-27 (166)
293 3bgw_A DNAB-like replicative h 96.1 0.0081 2.8E-07 60.9 7.1 34 106-139 186-219 (444)
294 3q72_A GTP-binding protein RAD 96.1 0.0021 7.2E-08 53.9 2.4 24 119-142 4-27 (166)
295 1kao_A RAP2A; GTP-binding prot 96.1 0.0026 8.8E-08 53.0 2.9 23 119-141 5-27 (167)
296 1e6c_A Shikimate kinase; phosp 96.1 0.0024 8.2E-08 54.6 2.7 23 118-140 3-25 (173)
297 1u8z_A RAS-related protein RAL 96.1 0.0026 9E-08 52.9 2.9 23 119-141 6-28 (168)
298 1q57_A DNA primase/helicase; d 96.1 0.027 9.1E-07 57.4 10.9 27 113-139 238-264 (503)
299 3q85_A GTP-binding protein REM 96.1 0.0029 1E-07 53.2 3.1 24 119-142 4-27 (169)
300 1zuh_A Shikimate kinase; alpha 96.1 0.0032 1.1E-07 54.0 3.4 24 117-140 7-30 (168)
301 3cbq_A GTP-binding protein REM 96.1 0.0028 9.4E-08 56.0 3.0 22 119-140 25-46 (195)
302 1qf9_A UMP/CMP kinase, protein 96.1 0.0029 9.8E-08 54.8 3.1 24 117-140 6-29 (194)
303 2dyk_A GTP-binding protein; GT 96.1 0.003 1E-07 52.6 3.1 23 119-141 3-25 (161)
304 2pt5_A Shikimate kinase, SK; a 96.1 0.0032 1.1E-07 53.7 3.3 22 119-140 2-23 (168)
305 1z0j_A RAB-22, RAS-related pro 96.1 0.0028 9.7E-08 53.1 2.9 23 119-141 8-30 (170)
306 2cdn_A Adenylate kinase; phosp 96.1 0.0035 1.2E-07 55.4 3.6 25 116-140 19-43 (201)
307 1zak_A Adenylate kinase; ATP:A 96.1 0.0026 8.8E-08 57.3 2.7 26 116-141 4-29 (222)
308 1ek0_A Protein (GTP-binding pr 96.1 0.0029 9.9E-08 52.9 2.9 23 119-141 5-27 (170)
309 1ukz_A Uridylate kinase; trans 96.1 0.0031 1.1E-07 55.7 3.2 25 117-141 15-39 (203)
310 3dl0_A Adenylate kinase; phosp 96.1 0.0032 1.1E-07 56.3 3.3 22 119-140 2-23 (216)
311 1z08_A RAS-related protein RAB 96.1 0.0029 1E-07 53.1 2.9 23 119-141 8-30 (170)
312 1g16_A RAS-related protein SEC 96.0 0.0028 9.5E-08 53.2 2.7 23 119-141 5-27 (170)
313 1ky3_A GTP-binding protein YPT 96.0 0.003 1E-07 53.6 2.9 23 119-141 10-32 (182)
314 1c1y_A RAS-related protein RAP 96.0 0.0031 1E-07 52.7 2.9 22 119-140 5-26 (167)
315 2lkc_A Translation initiation 96.0 0.004 1.4E-07 52.8 3.7 25 116-140 7-31 (178)
316 3tw8_B RAS-related protein RAB 96.0 0.0027 9.4E-08 53.8 2.6 23 119-141 11-33 (181)
317 3b1v_A Ferrous iron uptake tra 96.0 0.0033 1.1E-07 59.5 3.3 23 119-141 5-27 (272)
318 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0031 1.1E-07 53.5 2.9 23 119-141 9-31 (177)
319 3pqc_A Probable GTP-binding pr 96.0 0.0033 1.1E-07 54.0 3.0 23 119-141 25-47 (195)
320 1svi_A GTP-binding protein YSX 96.0 0.0033 1.1E-07 54.4 3.0 23 118-140 24-46 (195)
321 2iyv_A Shikimate kinase, SK; t 96.0 0.003 1E-07 54.9 2.7 23 118-140 3-25 (184)
322 2fn4_A P23, RAS-related protei 96.0 0.0031 1E-07 53.5 2.6 22 119-140 11-32 (181)
323 2cxx_A Probable GTP-binding pr 95.9 0.0033 1.1E-07 53.9 2.8 23 119-141 3-25 (190)
324 2qmh_A HPR kinase/phosphorylas 95.9 0.0058 2E-07 56.1 4.5 39 102-141 20-58 (205)
325 3bos_A Putative DNA replicatio 95.9 0.0045 1.5E-07 55.1 3.7 27 116-142 51-77 (242)
326 3cmw_A Protein RECA, recombina 95.9 0.0077 2.6E-07 70.2 6.5 29 114-142 729-757 (1706)
327 1r2q_A RAS-related protein RAB 95.9 0.0037 1.3E-07 52.3 2.9 22 119-140 8-29 (170)
328 1uj2_A Uridine-cytidine kinase 95.9 0.0039 1.3E-07 57.6 3.3 24 118-141 23-46 (252)
329 3clv_A RAB5 protein, putative; 95.9 0.0036 1.2E-07 53.8 2.9 23 119-141 9-31 (208)
330 3bc1_A RAS-related protein RAB 95.9 0.0038 1.3E-07 53.4 2.9 23 119-141 13-35 (195)
331 3lxw_A GTPase IMAP family memb 95.9 0.0041 1.4E-07 57.5 3.4 24 119-142 23-46 (247)
332 3iby_A Ferrous iron transport 95.9 0.0047 1.6E-07 57.8 3.8 23 119-141 3-25 (256)
333 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0038 1.3E-07 53.4 2.9 23 119-141 6-28 (189)
334 3t1o_A Gliding protein MGLA; G 95.9 0.004 1.4E-07 53.5 3.1 25 119-143 16-40 (198)
335 2dby_A GTP-binding protein; GD 95.9 0.0036 1.2E-07 62.1 3.1 21 120-140 4-24 (368)
336 1moz_A ARL1, ADP-ribosylation 95.9 0.0024 8.1E-08 54.6 1.5 23 117-139 18-40 (183)
337 2oil_A CATX-8, RAS-related pro 95.9 0.0039 1.3E-07 54.1 2.9 23 119-141 27-49 (193)
338 2grj_A Dephospho-COA kinase; T 95.9 0.0044 1.5E-07 55.7 3.3 24 117-140 12-35 (192)
339 1upt_A ARL1, ADP-ribosylation 95.9 0.004 1.4E-07 52.3 2.9 22 119-140 9-30 (171)
340 2hxs_A RAB-26, RAS-related pro 95.8 0.0044 1.5E-07 52.6 3.1 23 119-141 8-30 (178)
341 1r8s_A ADP-ribosylation factor 95.8 0.0043 1.5E-07 51.9 2.9 21 119-139 2-22 (164)
342 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0048 1.6E-07 57.5 3.5 25 116-140 3-27 (260)
343 2y8e_A RAB-protein 6, GH09086P 95.8 0.004 1.4E-07 52.6 2.7 22 119-140 16-37 (179)
344 2a9k_A RAS-related protein RAL 95.8 0.0044 1.5E-07 52.8 2.9 23 119-141 20-42 (187)
345 2g6b_A RAS-related protein RAB 95.8 0.0045 1.5E-07 52.6 2.9 23 119-141 12-34 (180)
346 1z0f_A RAB14, member RAS oncog 95.8 0.0047 1.6E-07 52.2 2.9 23 119-141 17-39 (179)
347 3con_A GTPase NRAS; structural 95.7 0.0047 1.6E-07 53.3 2.9 23 119-141 23-45 (190)
348 1wf3_A GTP-binding protein; GT 95.7 0.0051 1.7E-07 59.0 3.4 23 119-141 9-31 (301)
349 2xb4_A Adenylate kinase; ATP-b 95.7 0.0054 1.9E-07 55.6 3.3 23 119-141 2-24 (223)
350 2efe_B Small GTP-binding prote 95.7 0.0051 1.7E-07 52.3 2.9 23 119-141 14-36 (181)
351 2f6r_A COA synthase, bifunctio 95.7 0.0049 1.7E-07 58.3 3.1 23 117-139 75-97 (281)
352 3iev_A GTP-binding protein ERA 95.7 0.0056 1.9E-07 58.6 3.4 23 119-141 12-34 (308)
353 2bme_A RAB4A, RAS-related prot 95.7 0.0049 1.7E-07 52.7 2.7 23 119-141 12-34 (186)
354 1jbk_A CLPB protein; beta barr 95.6 0.0067 2.3E-07 51.5 3.5 26 116-141 42-67 (195)
355 2bov_A RAla, RAS-related prote 95.6 0.0053 1.8E-07 53.4 2.9 23 119-141 16-38 (206)
356 4dhe_A Probable GTP-binding pr 95.6 0.0039 1.3E-07 55.4 2.0 24 118-141 30-53 (223)
357 3tlx_A Adenylate kinase 2; str 95.6 0.006 2.1E-07 56.3 3.3 25 116-140 28-52 (243)
358 1nrj_B SR-beta, signal recogni 95.6 0.006 2E-07 54.0 3.1 23 119-141 14-36 (218)
359 3tkl_A RAS-related protein RAB 95.6 0.0057 1.9E-07 52.8 2.9 23 119-141 18-40 (196)
360 1vg8_A RAS-related protein RAB 95.6 0.0056 1.9E-07 53.5 2.9 23 119-141 10-32 (207)
361 1a7j_A Phosphoribulokinase; tr 95.6 0.0032 1.1E-07 60.1 1.4 26 116-141 4-29 (290)
362 1njg_A DNA polymerase III subu 95.6 0.0012 4E-08 58.2 -1.6 24 119-142 47-70 (250)
363 2gf9_A RAS-related protein RAB 95.6 0.0058 2E-07 52.9 2.9 23 119-141 24-46 (189)
364 3kkq_A RAS-related protein M-R 95.6 0.006 2.1E-07 52.2 2.9 22 119-140 20-41 (183)
365 2gf0_A GTP-binding protein DI- 95.6 0.0055 1.9E-07 53.1 2.6 22 119-140 10-31 (199)
366 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.0061 2.1E-07 51.9 2.9 22 119-140 7-28 (186)
367 3t5d_A Septin-7; GTP-binding p 95.6 0.0048 1.6E-07 57.8 2.4 23 119-141 10-32 (274)
368 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0056 1.9E-07 52.8 2.7 22 119-140 9-30 (184)
369 2xtp_A GTPase IMAP family memb 95.6 0.0062 2.1E-07 56.0 3.1 23 119-141 24-46 (260)
370 1ksh_A ARF-like protein 2; sma 95.5 0.006 2E-07 52.4 2.8 26 116-141 17-42 (186)
371 1e4v_A Adenylate kinase; trans 95.5 0.0066 2.3E-07 54.4 3.1 22 119-140 2-23 (214)
372 2fg5_A RAB-22B, RAS-related pr 95.5 0.0059 2E-07 53.2 2.6 23 119-141 25-47 (192)
373 1zbd_A Rabphilin-3A; G protein 95.5 0.007 2.4E-07 52.9 3.1 23 119-141 10-32 (203)
374 3be4_A Adenylate kinase; malar 95.5 0.0072 2.5E-07 54.4 3.2 26 116-141 4-29 (217)
375 2wsm_A Hydrogenase expression/ 95.5 0.0065 2.2E-07 54.0 2.9 24 118-141 31-54 (221)
376 3tqf_A HPR(Ser) kinase; transf 95.4 0.014 4.8E-07 52.5 4.9 35 104-139 4-38 (181)
377 1z06_A RAS-related protein RAB 95.4 0.007 2.4E-07 52.4 2.9 22 119-140 22-43 (189)
378 3t5g_A GTP-binding protein RHE 95.4 0.0066 2.2E-07 51.8 2.7 21 119-139 8-28 (181)
379 3oes_A GTPase rhebl1; small GT 95.4 0.0066 2.2E-07 53.3 2.7 23 119-141 26-48 (201)
380 2cjw_A GTP-binding protein GEM 95.4 0.0078 2.7E-07 52.9 3.1 22 119-140 8-29 (192)
381 2a5j_A RAS-related protein RAB 95.4 0.0073 2.5E-07 52.4 2.9 23 119-141 23-45 (191)
382 1ltq_A Polynucleotide kinase; 95.4 0.0078 2.7E-07 56.5 3.3 22 118-139 3-24 (301)
383 3dz8_A RAS-related protein RAB 95.4 0.0068 2.3E-07 52.6 2.7 23 119-141 25-47 (191)
384 1jwy_B Dynamin A GTPase domain 95.4 0.0075 2.6E-07 56.9 3.1 24 119-142 26-49 (315)
385 2il1_A RAB12; G-protein, GDP, 95.4 0.0068 2.3E-07 52.9 2.6 23 119-141 28-50 (192)
386 2iwr_A Centaurin gamma 1; ANK 95.4 0.0066 2.3E-07 51.7 2.5 22 119-140 9-30 (178)
387 2o52_A RAS-related protein RAB 95.4 0.0076 2.6E-07 53.0 2.9 22 119-140 27-48 (200)
388 1sky_E F1-ATPase, F1-ATP synth 95.4 0.0078 2.7E-07 61.7 3.3 43 105-148 140-182 (473)
389 1x3s_A RAS-related protein RAB 95.4 0.0077 2.6E-07 51.8 2.9 23 119-141 17-39 (195)
390 1zj6_A ADP-ribosylation factor 95.4 0.0085 2.9E-07 51.7 3.1 22 119-140 18-39 (187)
391 3reg_A RHO-like small GTPase; 95.4 0.0078 2.7E-07 52.3 2.9 23 119-141 25-47 (194)
392 3cnl_A YLQF, putative uncharac 95.3 0.0092 3.1E-07 56.1 3.6 31 118-148 100-130 (262)
393 3cph_A RAS-related protein SEC 95.3 0.0078 2.7E-07 52.7 2.9 23 119-141 22-44 (213)
394 1zd9_A ADP-ribosylation factor 95.3 0.008 2.7E-07 52.1 2.9 22 119-140 24-45 (188)
395 4bas_A ADP-ribosylation factor 95.3 0.008 2.7E-07 52.0 2.9 23 119-141 19-41 (199)
396 2h57_A ADP-ribosylation factor 95.3 0.0056 1.9E-07 53.0 1.9 23 119-141 23-45 (190)
397 2bcg_Y Protein YP2, GTP-bindin 95.3 0.0074 2.5E-07 52.9 2.7 23 119-141 10-32 (206)
398 2atv_A RERG, RAS-like estrogen 95.3 0.008 2.8E-07 52.4 2.9 22 119-140 30-51 (196)
399 2h17_A ADP-ribosylation factor 95.3 0.0071 2.4E-07 52.0 2.5 23 119-141 23-45 (181)
400 2p65_A Hypothetical protein PF 95.3 0.009 3.1E-07 50.8 3.1 27 116-142 42-68 (187)
401 1ak2_A Adenylate kinase isoenz 95.3 0.01 3.4E-07 54.0 3.6 26 116-141 15-40 (233)
402 2p5s_A RAS and EF-hand domain 95.3 0.0083 2.8E-07 52.5 2.9 23 119-141 30-52 (199)
403 2ew1_A RAS-related protein RAB 95.3 0.0075 2.6E-07 53.6 2.7 22 119-140 28-49 (201)
404 4edh_A DTMP kinase, thymidylat 95.3 0.0098 3.4E-07 54.3 3.5 28 115-142 4-31 (213)
405 2h92_A Cytidylate kinase; ross 95.3 0.0083 2.8E-07 53.5 2.9 25 117-141 3-27 (219)
406 2qu8_A Putative nucleolar GTP- 95.3 0.0086 3E-07 53.9 3.0 22 119-140 31-52 (228)
407 3bwd_D RAC-like GTP-binding pr 95.3 0.011 3.7E-07 50.3 3.5 23 118-140 9-31 (182)
408 3a1s_A Iron(II) transport prot 95.3 0.0093 3.2E-07 55.7 3.3 23 119-141 7-29 (258)
409 2f7s_A C25KG, RAS-related prot 95.3 0.0091 3.1E-07 52.8 3.1 24 119-142 27-50 (217)
410 3i8s_A Ferrous iron transport 95.3 0.0086 3E-07 56.3 3.1 23 119-141 5-27 (274)
411 2q3h_A RAS homolog gene family 95.2 0.0096 3.3E-07 51.9 3.1 22 119-140 22-43 (201)
412 3llu_A RAS-related GTP-binding 95.2 0.0098 3.4E-07 52.0 3.2 24 119-142 22-45 (196)
413 2fv8_A H6, RHO-related GTP-bin 95.2 0.0086 3E-07 52.8 2.6 23 119-141 27-49 (207)
414 3d3q_A TRNA delta(2)-isopenten 95.2 0.01 3.4E-07 58.4 3.3 25 118-142 8-32 (340)
415 3lv8_A DTMP kinase, thymidylat 95.2 0.011 3.8E-07 55.0 3.4 27 116-142 26-52 (236)
416 3v9p_A DTMP kinase, thymidylat 95.1 0.0087 3E-07 55.4 2.6 28 115-142 23-50 (227)
417 3zvl_A Bifunctional polynucleo 95.1 0.0099 3.4E-07 59.5 3.2 27 114-140 255-281 (416)
418 2j1l_A RHO-related GTP-binding 95.1 0.0098 3.4E-07 52.9 2.9 22 119-140 36-57 (214)
419 3c5c_A RAS-like protein 12; GD 95.1 0.01 3.5E-07 51.6 2.9 22 119-140 23-44 (187)
420 1sxj_D Activator 1 41 kDa subu 95.1 0.0025 8.5E-08 60.8 -1.2 42 251-304 133-174 (353)
421 2aka_B Dynamin-1; fusion prote 95.1 0.01 3.5E-07 55.4 3.0 24 119-142 28-51 (299)
422 1gwn_A RHO-related GTP-binding 95.1 0.0093 3.2E-07 53.1 2.7 23 119-141 30-52 (205)
423 2ocp_A DGK, deoxyguanosine kin 95.1 0.011 3.9E-07 53.9 3.2 27 116-142 1-27 (241)
424 2fu5_C RAS-related protein RAB 95.1 0.0066 2.2E-07 51.9 1.5 23 119-141 10-32 (183)
425 2fh5_B SR-beta, signal recogni 95.1 0.015 5.3E-07 51.2 4.0 23 119-141 9-31 (214)
426 4tmk_A Protein (thymidylate ki 95.0 0.013 4.3E-07 53.6 3.4 27 116-142 2-28 (213)
427 2i1q_A DNA repair and recombin 95.0 0.013 4.5E-07 56.0 3.7 27 113-139 94-120 (322)
428 2gco_A H9, RHO-related GTP-bin 95.0 0.01 3.5E-07 52.1 2.7 22 120-141 28-49 (201)
429 3cmu_A Protein RECA, recombina 95.0 0.018 6.1E-07 68.2 5.2 27 114-140 380-406 (2050)
430 2atx_A Small GTP binding prote 95.0 0.011 3.7E-07 51.2 2.6 22 119-140 20-41 (194)
431 3a8t_A Adenylate isopentenyltr 94.9 0.013 4.5E-07 57.6 3.4 27 116-142 39-65 (339)
432 3def_A T7I23.11 protein; chlor 94.9 0.013 4.3E-07 54.5 3.1 23 119-141 38-60 (262)
433 2b6h_A ADP-ribosylation factor 94.9 0.01 3.5E-07 51.9 2.4 22 119-140 31-52 (192)
434 1h65_A Chloroplast outer envel 94.9 0.013 4.4E-07 54.6 3.1 23 119-141 41-63 (270)
435 2hf9_A Probable hydrogenase ni 94.9 0.012 4.2E-07 52.4 2.9 24 118-141 39-62 (226)
436 3tmk_A Thymidylate kinase; pho 94.9 0.015 5.1E-07 53.4 3.4 33 115-148 3-35 (216)
437 3crm_A TRNA delta(2)-isopenten 94.8 0.015 5E-07 56.8 3.3 25 118-142 6-30 (323)
438 3ld9_A DTMP kinase, thymidylat 94.8 0.016 5.6E-07 53.5 3.4 28 115-142 19-46 (223)
439 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.015 5E-07 53.0 3.1 26 116-141 38-63 (262)
440 1ypw_A Transitional endoplasmi 94.7 0.0047 1.6E-07 67.1 -0.4 44 110-155 504-547 (806)
441 3exa_A TRNA delta(2)-isopenten 94.7 0.016 5.6E-07 56.5 3.5 25 117-141 3-27 (322)
442 2zts_A Putative uncharacterize 94.7 0.021 7.3E-07 51.2 4.0 25 114-138 27-51 (251)
443 1p5z_B DCK, deoxycytidine kina 94.7 0.0096 3.3E-07 55.2 1.8 28 115-142 22-49 (263)
444 4dcu_A GTP-binding protein ENG 94.7 0.012 4.2E-07 59.3 2.7 22 119-140 25-46 (456)
445 4djt_A GTP-binding nuclear pro 94.7 0.0062 2.1E-07 53.9 0.4 23 119-141 13-35 (218)
446 2g3y_A GTP-binding protein GEM 94.7 0.017 5.8E-07 52.3 3.3 22 119-140 39-60 (211)
447 2yc2_C IFT27, small RAB-relate 94.7 0.0062 2.1E-07 53.0 0.4 22 119-140 22-43 (208)
448 2r62_A Cell division protease 94.7 0.0034 1.2E-07 57.9 -1.4 32 107-140 36-67 (268)
449 2hup_A RAS-related protein RAB 94.7 0.014 4.9E-07 51.3 2.6 23 119-141 31-53 (201)
450 2x77_A ADP-ribosylation factor 94.6 0.0097 3.3E-07 51.3 1.5 21 119-139 24-44 (189)
451 3cpj_B GTP-binding protein YPT 94.6 0.016 5.3E-07 51.9 2.9 23 119-141 15-37 (223)
452 4gzl_A RAS-related C3 botulinu 94.6 0.016 5.3E-07 51.2 2.7 21 119-139 32-52 (204)
453 3q3j_B RHO-related GTP-binding 94.5 0.018 6E-07 51.4 2.9 22 119-140 29-50 (214)
454 2j0v_A RAC-like GTP-binding pr 94.4 0.017 5.9E-07 50.8 2.7 22 119-140 11-32 (212)
455 2v3c_C SRP54, signal recogniti 94.4 0.0044 1.5E-07 62.8 -1.5 35 118-152 100-134 (432)
456 2chg_A Replication factor C sm 94.3 0.022 7.7E-07 49.3 3.1 23 119-141 40-62 (226)
457 3n70_A Transport activator; si 94.3 0.022 7.4E-07 48.0 2.8 27 116-142 23-49 (145)
458 3umf_A Adenylate kinase; rossm 94.2 0.025 8.6E-07 52.0 3.2 29 113-141 25-53 (217)
459 3foz_A TRNA delta(2)-isopenten 94.1 0.025 8.6E-07 55.1 3.3 25 117-141 10-34 (316)
460 3dm5_A SRP54, signal recogniti 94.1 0.018 6.2E-07 58.5 2.3 28 116-143 99-126 (443)
461 3cmw_A Protein RECA, recombina 94.1 0.043 1.5E-06 64.1 5.7 27 114-140 380-406 (1706)
462 2v1u_A Cell division control p 94.1 0.019 6.6E-07 54.8 2.4 28 115-142 42-69 (387)
463 2orw_A Thymidine kinase; TMTK, 93.9 0.035 1.2E-06 49.2 3.4 25 116-140 2-27 (184)
464 1puj_A YLQF, conserved hypothe 93.9 0.037 1.2E-06 52.6 3.8 30 117-146 120-149 (282)
465 4hlc_A DTMP kinase, thymidylat 93.8 0.034 1.2E-06 50.3 3.3 26 117-142 2-27 (205)
466 3sr0_A Adenylate kinase; phosp 93.8 0.035 1.2E-06 50.4 3.3 23 119-141 2-24 (206)
467 3syl_A Protein CBBX; photosynt 93.8 0.034 1.2E-06 52.0 3.3 26 116-141 66-91 (309)
468 3th5_A RAS-related C3 botulinu 92.8 0.012 3.9E-07 51.7 0.0 21 119-139 32-52 (204)
469 3gj0_A GTP-binding nuclear pro 93.6 0.021 7.3E-07 50.7 1.6 21 120-140 18-39 (221)
470 3p32_A Probable GTPase RV1496/ 93.6 0.034 1.2E-06 54.2 3.1 27 116-142 78-104 (355)
471 2hjg_A GTP-binding protein ENG 93.6 0.029 1E-06 56.2 2.7 22 119-140 5-26 (436)
472 3eph_A TRNA isopentenyltransfe 93.5 0.034 1.2E-06 56.0 3.1 24 118-141 3-26 (409)
473 3uk6_A RUVB-like 2; hexameric 93.5 0.035 1.2E-06 53.3 3.0 29 115-143 68-96 (368)
474 1d2n_A N-ethylmaleimide-sensit 93.4 0.04 1.4E-06 51.0 3.1 25 116-140 63-87 (272)
475 2x2e_A Dynamin-1; nitration, h 93.4 0.027 9.1E-07 54.8 1.9 23 119-141 33-55 (353)
476 1wxq_A GTP-binding protein; st 93.4 0.039 1.3E-06 55.1 3.1 23 119-141 2-24 (397)
477 3r7w_A Gtpase1, GTP-binding pr 93.3 0.048 1.6E-06 52.0 3.6 24 118-141 4-27 (307)
478 1ofh_A ATP-dependent HSL prote 93.3 0.041 1.4E-06 51.1 3.0 25 117-141 50-74 (310)
479 3ec1_A YQEH GTPase; atnos1, at 93.2 0.039 1.3E-06 54.4 2.9 25 116-140 161-185 (369)
480 2qby_B CDC6 homolog 3, cell di 93.2 0.047 1.6E-06 52.4 3.3 26 116-141 44-69 (384)
481 3l0i_B RAS-related protein RAB 93.2 0.0075 2.6E-07 52.8 -2.2 23 119-141 35-57 (199)
482 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.05 1.7E-06 52.3 3.5 26 116-141 44-69 (322)
483 2qen_A Walker-type ATPase; unk 93.1 0.052 1.8E-06 51.0 3.5 26 116-141 30-55 (350)
484 2qgz_A Helicase loader, putati 93.1 0.055 1.9E-06 51.8 3.7 25 117-141 152-176 (308)
485 2bjv_A PSP operon transcriptio 93.1 0.065 2.2E-06 49.2 4.0 27 116-142 28-54 (265)
486 3hws_A ATP-dependent CLP prote 93.1 0.046 1.6E-06 53.0 3.1 25 117-141 51-75 (363)
487 1knx_A Probable HPR(Ser) kinas 93.0 0.096 3.3E-06 50.9 5.2 37 102-139 133-169 (312)
488 2qpt_A EH domain-containing pr 93.0 0.045 1.5E-06 56.9 3.0 23 119-141 67-89 (550)
489 1lnz_A SPO0B-associated GTP-bi 93.0 0.055 1.9E-06 52.9 3.4 32 109-140 150-181 (342)
490 3h2y_A GTPase family protein; 92.9 0.042 1.4E-06 54.1 2.6 26 116-141 159-184 (368)
491 3gmt_A Adenylate kinase; ssgci 92.8 0.054 1.8E-06 50.4 3.0 23 118-140 9-31 (230)
492 3d8b_A Fidgetin-like protein 1 92.8 0.062 2.1E-06 52.3 3.5 27 115-141 115-141 (357)
493 3pvs_A Replication-associated 92.8 0.051 1.8E-06 55.0 3.1 39 110-148 41-81 (447)
494 2vhj_A Ntpase P4, P4; non- hyd 92.8 0.063 2.1E-06 52.6 3.5 28 112-139 118-145 (331)
495 3eie_A Vacuolar protein sortin 92.8 0.065 2.2E-06 51.2 3.6 26 116-141 50-75 (322)
496 3pfi_A Holliday junction ATP-d 92.7 0.055 1.9E-06 51.4 3.1 24 119-142 57-80 (338)
497 3geh_A MNME, tRNA modification 92.7 0.041 1.4E-06 56.1 2.1 25 116-140 223-247 (462)
498 1x6v_B Bifunctional 3'-phospho 92.6 0.061 2.1E-06 57.0 3.5 38 116-153 51-89 (630)
499 3t15_A Ribulose bisphosphate c 92.6 0.059 2E-06 51.0 3.0 24 118-141 37-60 (293)
500 1lw7_A Transcriptional regulat 92.6 0.062 2.1E-06 52.3 3.2 32 225-261 295-329 (365)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.9e-60 Score=470.58 Aligned_cols=240 Identities=32% Similarity=0.540 Sum_probs=212.2
Q ss_pred CCcceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 87 DGDVLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
...++|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.......
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34568999999999963 46999999999999999999999999999999999999999999999999987643222
Q ss_pred h-hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 163 E-ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 163 ~-~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
. ..+++||||||++.+|+.+||+||+.+++.. .+.+.++..+++.++|+.+||.++.+++|.+|||||||||+|||||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~-~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL-DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 1 1234699999999999999999999998743 3456777788899999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|+||||||||+|||+.++..++++|++++++ | +|||+||||++++.++||||
T Consensus 179 ~~-------~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g----------~Tii~vTHdl~~~~~~aDrv------- 234 (366)
T 3tui_C 179 AS-------NPKVLLCDQATSALDPATTRSILELLKDINRRLG----------LTILLITHEMDVVKRICDCV------- 234 (366)
T ss_dssp TT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC----------CEEEEEESCHHHHHHHCSEE-------
T ss_pred hc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEE-------
Confidence 97 69999999999999999999999999999876 5 69999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|+|+++|++++++ .+.+++++.|+..
T Consensus 235 -----------------------~vl~~G~iv~~g~~~ev~~~p~~~~~~~~~~~ 266 (366)
T 3tui_C 235 -----------------------AVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266 (366)
T ss_dssp -----------------------EEEETTEEEECCBHHHHHSSCCSHHHHHHHHH
T ss_pred -----------------------EEEECCEEEEEcCHHHHHhCCCcHHHHHHHhh
Confidence 999999999999999976 4667888877654
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.3e-59 Score=468.89 Aligned_cols=235 Identities=30% Similarity=0.484 Sum_probs=207.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+|+++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..........+++||
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 69999999999999999999999999999999999999999999999999999999999999987321111112234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++.. .+...++.++++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~------- 155 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGN-GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP------- 155 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTT-SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 999999999999999999998643 234556677889999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+..+.++++.|.++.++ | +|+|+||||++++..+||||
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g----------~tvi~vTHd~~ea~~~aDri---------------- 209 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANG----------KSAVFVSHDREEALQYADRI---------------- 209 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHHHHCSEE----------------
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHHCCEE----------------
Confidence 69999999999999999999999988887654 5 69999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|..
T Consensus 210 --------------~vl~~G~i~~~g~~~el~~~p~~~~~a~~~g 240 (359)
T 3fvq_A 210 --------------AVMKQGRILQTASPHELYRQPADLDAALFIG 240 (359)
T ss_dssp --------------EEEETTEEEEEECHHHHHHSCSCHHHHHHHS
T ss_pred --------------EEEECCEEEEEeCHHHHHhCcccHHHHHhcc
Confidence 999999999999999976 455666766664
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.7e-59 Score=468.75 Aligned_cols=231 Identities=32% Similarity=0.533 Sum_probs=211.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~-~---~~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-P---AERGVG 78 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-G---GGSCEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC-H---HHCCEE
Confidence 599999999999999999999999999999999999999999999999999999999999999986532 2 124699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+||++||+||+.|++.. .+.++++.++++.++++.++|.++.+++|.+|||||||||+|||||+.
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~------- 150 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA------- 150 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHH-TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH-------
T ss_pred EEecCCcCCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc-------
Confidence 999999999999999999998754 346677788899999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|+||||||||++||+..+.++++.|++++++ | +|+|+||||++++..+||||
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g----------~tii~vTHd~~ea~~~aDri---------------- 204 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG----------RTMIYVTHDQVEAMTLADKI---------------- 204 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEECSCHHHHHHHCSEE----------------
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999765 6 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|++.++. .+.++++..|..
T Consensus 205 --------------~vl~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 205 --------------VVLDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp --------------EEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred --------------EEEECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 999999999999999975 567888888775
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3e-58 Score=441.23 Aligned_cols=236 Identities=35% Similarity=0.551 Sum_probs=205.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC-hhhhccce
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~-~~~~~~~~ 168 (382)
++|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++. ... .....+.+
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-STTCCHHHHHHH
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-CccccHHHHhCc
Confidence 4799999999999889999999999999999999999999999999999999999999999999874 111 11111235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||||||++.+|+.+||+||+.++.....+....+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~----- 176 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM----- 176 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-----
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC-----
Confidence 999999999999999999999864222334455556778999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||+|||+.++..+.++|++++++| +|||+||||++++.++|||+
T Consensus 177 --~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v--------------- 229 (263)
T 2olj_A 177 --EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG----------MTMVVVTHEMGFAREVGDRV--------------- 229 (263)
T ss_dssp --CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEE---------------
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHHHHhCCEE---------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. +..+.+..++.
T Consensus 230 ---------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 260 (263)
T 2olj_A 230 ---------------LFMDGGYIIEEGKPEDLFDRPQHERTKAFLS 260 (263)
T ss_dssp ---------------EEEETTEEEEEECHHHHHHSCCSHHHHHHHT
T ss_pred ---------------EEEECCEEEEECCHHHHHhCcccHHHHHHHH
Confidence 9999999999998888764 44566666654
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-58 Score=440.79 Aligned_cols=236 Identities=33% Similarity=0.531 Sum_probs=204.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCC----------CC
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG----------LI 159 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~----------~~ 159 (382)
++|+++||+|+|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ..
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 47999999999998899999999999999999999999999999999999999999999999998741 11
Q ss_pred Chh-hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHH
Q 016804 160 SDE-EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 160 ~~~-~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaI 237 (382)
... ...+.+||||||++.+|+.+||+||+.++.....+....+..+++.++++.+||.+. .++++.+|||||||||+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 111 111236999999999999999999999864222234455556778999999999998 999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|+||||||||+|||+.++..+.++|++++++| +|||+||||++++.++|||+
T Consensus 165 AraL~~-------~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v---- 223 (262)
T 1b0u_A 165 ARALAM-------EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHV---- 223 (262)
T ss_dssp HHHHHT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT----------CCEEEECSCHHHHHHHCSEE----
T ss_pred HHHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE----
Confidence 999997 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHH
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 372 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 372 (382)
++|++|++++.|+++++.. +..+.+..++
T Consensus 224 --------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 253 (262)
T 1b0u_A 224 --------------------------IFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 253 (262)
T ss_dssp --------------------------EEEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred --------------------------EEEECCEEEEeCCHHHHHhCcchHHHHHHH
Confidence 9999999999998888754 3455555554
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.5e-58 Score=432.31 Aligned_cols=223 Identities=36% Similarity=0.544 Sum_probs=192.8
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--h
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~ 164 (382)
+|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........ .
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 5899999999963 469999999999999999999999999999999999999999999999999865432221 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL 241 (382)
.+.+||||||++.+|+.+||+||+.++.... .....++..+++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 1235999999999999999999999876432 134556667788999999999875 5999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
++ +|++|||||||+|||+.++..++++|++++++ | +|+|+||||++.+ .+|||+
T Consensus 161 ~~-------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vtHd~~~~-~~~d~i------- 215 (235)
T 3tif_A 161 AN-------NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG----------KTVVVVTHDINVA-RFGERI------- 215 (235)
T ss_dssp TT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEECSCHHHH-TTSSEE-------
T ss_pred Hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEcCCHHHH-HhCCEE-------
Confidence 97 69999999999999999999999999999765 6 5999999999864 788877
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+|++.++++++.
T Consensus 216 -----------------------~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 216 -----------------------IYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp -----------------------EEEETTEEEEEEECC---
T ss_pred -----------------------EEEECCEEEEEcChhhhc
Confidence 999999999999877754
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=7.1e-58 Score=455.90 Aligned_cols=234 Identities=40% Similarity=0.670 Sum_probs=209.8
Q ss_pred CcceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 88 GDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 88 ~~~~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
+.++|+++||+|+| +++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... . .+
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~---~~ 86 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-P---QK 86 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-G---GG
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-h---hh
Confidence 45689999999999 8888999999999999999999999999999999999999999999999999976431 1 23
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
++||||||++.+|+++||+||+.|++.. .+.+.++.++++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~--- 162 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLRE-KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP--- 162 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT---
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc---
Confidence 4699999999999999999999998743 234566667889999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||++||+..+.++.+.|+++.++ | +|+|+||||++++..+|||+
T Consensus 163 ----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri------------ 216 (355)
T 1z47_A 163 ----RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG----------VTSVFVTHDQEEALEVADRV------------ 216 (355)
T ss_dssp ----CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEE------------
T ss_pred ----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHHHhCCEE------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|+.
T Consensus 217 ------------------~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 247 (355)
T 1z47_A 217 ------------------LVLHEGNVEQFGTPEEVYEKPGTLFVASFIG 247 (355)
T ss_dssp ------------------EEEETTEEEEEECHHHHHHSCSSHHHHHHTT
T ss_pred ------------------EEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 999999999999998875 455677777764
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.3e-57 Score=426.00 Aligned_cols=218 Identities=34% Similarity=0.490 Sum_probs=193.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--hhccc
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~~~~~ 167 (382)
++|+++||+|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ...+.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 4799999999999889999999999999999999999999999999999999999999999999976432111 11123
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+||||||++.+|+.+||+||+.++.... +....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~---- 157 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKM-GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN---- 157 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT----
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc----
Confidence 6999999999999999999999875432 34445556778999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|++++++| +|+|+||||++++ .+|||+
T Consensus 158 ---~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~-~~~d~v-------------- 209 (224)
T 2pcj_A 158 ---EPILLFADEPTGNLDSANTKRVMDIFLKINEGG----------TSIVMVTHERELA-ELTHRT-------------- 209 (224)
T ss_dssp ---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHH-TTSSEE--------------
T ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHH-HhCCEE--------------
Confidence 699999999999999999999999999998776 5999999999987 788877
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
++|++|+++++|+
T Consensus 210 ----------------~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 210 ----------------LEMKDGKVVGEIT 222 (224)
T ss_dssp ----------------EEEETTEEEEEEE
T ss_pred ----------------EEEECCEEEEEee
Confidence 9999999999984
No 9
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.3e-58 Score=443.65 Aligned_cols=225 Identities=30% Similarity=0.537 Sum_probs=197.8
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+++|+++||+|+|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..........+.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 358999999999975 4699999999999999999999999999999999999999999999999997421111111233
Q ss_pred eEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 168 RIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 168 ~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+||||||++ .+| .+||+||+.|+... .+.+.++..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~-- 160 (275)
T 3gfo_A 85 SIGIVFQDPDNQLF-SASVYQDVSFGAVN-MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM-- 160 (275)
T ss_dssp SEEEECSSGGGTCC-SSBHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT--
T ss_pred cEEEEEcCcccccc-cCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc--
Confidence 699999997 345 68999999998643 345667778889999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~-~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..++++|++++ ++| +|||+||||++++.++||||
T Consensus 161 -----~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vtHdl~~~~~~~drv----------- 214 (275)
T 3gfo_A 161 -----EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG----------ITIIIATHDIDIVPLYCDNV----------- 214 (275)
T ss_dssp -----CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC----------CEEEEEESCCSSGGGGCSEE-----------
T ss_pred -----CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC----------CEEEEEecCHHHHHHhCCEE-----------
Confidence 699999999999999999999999999997 556 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++++|+++++..
T Consensus 215 -------------------~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 215 -------------------FVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp -------------------EEEETTEEEEEECHHHHTH
T ss_pred -------------------EEEECCEEEEECCHHHHhc
Confidence 9999999999999988754
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1e-57 Score=455.42 Aligned_cols=231 Identities=34% Similarity=0.571 Sum_probs=206.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~---~~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-P---KYREVG 78 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-G---GGTTEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-h---hhCcEE
Confidence 589999999999999999999999999999999999999999999999999999999999999976432 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++.. .+.+.++.++++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~------- 150 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRA-RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK------- 150 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSS-SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 999999999999999999997632 233344556778999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+..+.++.+.|++++++ | +|+|+||||++++..+|||+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~~~~~adri---------------- 204 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG----------ITSVYVTHDQAEAMTMASRI---------------- 204 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEEESCHHHHHHHCSEE----------------
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|+.
T Consensus 205 --------------~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 235 (359)
T 2yyz_A 205 --------------AVFNQGKLVQYGTPDEVYDSPKNMFVASFIG 235 (359)
T ss_dssp --------------EEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred --------------EEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 999999999999999876 455677777764
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9.1e-58 Score=438.18 Aligned_cols=237 Identities=25% Similarity=0.364 Sum_probs=203.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... .... +..+
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~-~~~~-~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ-PKAL-ARTR 87 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC-HHHH-HHHE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC-HHHH-hheE
Confidence 5799999999999999999999999999999999999999999999999999999999999999986542 2222 2359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+++.+||+||+.++...+ ...+..+++.++++.+++.++.++++.+|||||||||+|||||++.|+ ..
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~-~~ 163 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ-PQ 163 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC-SS
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc-cC
Confidence 99999999888899999999876432 223345678899999999999999999999999999999999996110 00
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
.+|++|||||||+|||+.++..++++|++++++++ +|+|+||||++++.++|||+
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~---------~tvi~vtHdl~~~~~~~d~v---------------- 218 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP---------LAVCCVLHDLNLAALYADRI---------------- 218 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSS---------EEEEEECSCHHHHHHHCSEE----------------
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCC---------CEEEEEEcCHHHHHHhCCEE----------------
Confidence 14999999999999999999999999999987642 69999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++... +.+.+++.
T Consensus 219 --------------~vl~~G~i~~~g~~~~~~~~--~~l~~~~~ 246 (266)
T 4g1u_C 219 --------------MLLAQGKLVACGTPEEVLNA--ETLTQWYQ 246 (266)
T ss_dssp --------------EEEETTEEEEEECHHHHCCH--HHHHHHCC
T ss_pred --------------EEEECCEEEEEcCHHHHhCc--HHHHHHhC
Confidence 99999999999998887642 34444443
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-57 Score=455.35 Aligned_cols=231 Identities=35% Similarity=0.567 Sum_probs=208.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~---~~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-P---KDRNVG 78 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-G---GGTTEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-H---hHCcEE
Confidence 599999999999888999999999999999999999999999999999999999999999999976432 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++.. .+.+.++.+++++++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------- 150 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLEL-RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK------- 150 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc-------
Confidence 999999999999999999998643 234566667889999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+..+.++.+.|++++++ | +|+|+||||++++..+|||+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri---------------- 204 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG----------ITTVYVTHDQAEALAMADRI---------------- 204 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEE----------------
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|+.
T Consensus 205 --------------~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 235 (362)
T 2it1_A 205 --------------AVIREGEILQVGTPDEVYYKPKYKFVGGFLG 235 (362)
T ss_dssp --------------EEEETTEEEEEECHHHHHHSCSBHHHHHHSB
T ss_pred --------------EEEECCEEEEEcCHHHHHhCccchHHHHHcC
Confidence 999999999999999875 455677777764
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-57 Score=428.55 Aligned_cols=224 Identities=28% Similarity=0.483 Sum_probs=197.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++||+|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK-PAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHTT
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-CHHHHHhCC
Confidence 4589999999999988999999999999999999999999999999999999999999999999997543 222222335
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcC-CcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-LKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~g-L~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
||||||++.+|+.+||+||+.++.... ...++..+.++++++.++ +.+..++++.+|||||||||+|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~---- 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS---- 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT----
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcC--CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 999999999999999999999864211 223345667888999995 9888999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|++++++| +|+|+||||++++.++|||+
T Consensus 157 ---~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g----------~tvi~vtHd~~~~~~~~d~v-------------- 209 (240)
T 1ji0_A 157 ---RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG----------TTILLVEQNALGALKVAHYG-------------- 209 (240)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CCEEEEESCHHHHHHHCSEE--------------
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEE--------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 210 ----------------~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 210 ----------------YVLETGQIVLEGKASELLD 228 (240)
T ss_dssp ----------------EEEETTEEEEEEEHHHHHT
T ss_pred ----------------EEEECCEEEEEcCHHHHhc
Confidence 9999999999998888753
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.7e-58 Score=437.23 Aligned_cols=223 Identities=29% Similarity=0.492 Sum_probs=197.3
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ......+.+
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK-EPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHHT
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-CHHHHHhCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999997543 222212235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhh-cCC-----------CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYE-NSK-----------MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~-~~~-----------~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
||||||++.+|+.+||+||+.++... ..+ ....+..+++.++++.+||.+..++++.+|||||||||+
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence 99999999999999999999986532 111 223445667889999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||+. +|++|||||||+|||+.++..+.++|++++++| +|||+||||++++.++|||+
T Consensus 164 iAraL~~-------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v--- 223 (257)
T 1g6h_A 164 IGRALMT-------NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHL--- 223 (257)
T ss_dssp HHHHHHT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCCSTTGGGCSEE---
T ss_pred HHHHHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEE---
Confidence 9999997 699999999999999999999999999998766 59999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|++|++++.|++++
T Consensus 224 ---------------------------~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 224 ---------------------------YVMFNGQIIAEGRGEE 239 (257)
T ss_dssp ---------------------------EEEETTEEEEEEESHH
T ss_pred ---------------------------EEEECCEEEEEeCHHH
Confidence 9999999999998887
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.1e-57 Score=455.15 Aligned_cols=235 Identities=33% Similarity=0.536 Sum_probs=207.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~~~~~~ 168 (382)
+|+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...... ....+++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 59999999999999999999999999999999999999999999999999999999999999987430000 0112346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||||||++.+|+++||+||+.|++... +...++.+++++++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~----- 156 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR----- 156 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT-----
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999986432 34566667889999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+..+.++.+.|+++.++ | +|+|+||||++++..+|||+
T Consensus 157 --~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri-------------- 210 (372)
T 1g29_1 157 --KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG----------VTTIYVTHDQVEAMTMGDRI-------------- 210 (372)
T ss_dssp --CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEE--------------
T ss_pred --CCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|+.
T Consensus 211 ----------------~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 241 (372)
T 1g29_1 211 ----------------AVMNRGVLQQVGSPDEVYDKPANTFVAGFIG 241 (372)
T ss_dssp ----------------EEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred ----------------EEEeCCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 999999999999999875 456677777764
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.2e-57 Score=454.92 Aligned_cols=231 Identities=32% Similarity=0.525 Sum_probs=201.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~---~~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-P---KDRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-G---GGGTEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-h---hhCcEE
Confidence 599999999999989999999999999999999999999999999999999999999999999976432 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++.. .+.+.++.++++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------- 158 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKI-KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV------- 158 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 999999999999999999997532 234556667889999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+..+.++.+.|++++++ | .|+|+||||++++..+|||+
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri---------------- 212 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK----------VTTIYVTHDQVEAMTMGDRI---------------- 212 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEE----------------
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|+.
T Consensus 213 --------------~vl~~G~i~~~g~~~~l~~~p~~~~~a~~~g 243 (372)
T 1v43_A 213 --------------AVMNRGQLLQIGSPTEVYLRPNSVFVATFIG 243 (372)
T ss_dssp --------------EEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred --------------EEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 999999999999999875 455677777764
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.8e-57 Score=452.73 Aligned_cols=235 Identities=36% Similarity=0.544 Sum_probs=207.1
Q ss_pred eEEEEeEEEEeCCee--eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC-hhhhccc
Q 016804 91 LIDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~--iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~-~~~~~~~ 167 (382)
+|+++||+|+|++++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .....++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 599999999998887 9999999999999999999999999999999999999999999999998743100 0011234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+||||||++.+|+++||+||+.|++.. .+.+.++.++++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~---- 157 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK---- 157 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT-SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT----
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 699999999999999999999997642 234556667889999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+..+.++.+.|++++++ | +|+|+||||++++..+|||+
T Consensus 158 ---~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~~~~~adri------------- 211 (353)
T 1oxx_K 158 ---DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG----------VTLLVVSHDPADIFAIADRV------------- 211 (353)
T ss_dssp ---CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC----------CEEEEEESCHHHHHHHCSEE-------------
T ss_pred ---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|..
T Consensus 212 -----------------~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 242 (353)
T 1oxx_K 212 -----------------GVLVKGKLVQVGKPEDLYDNPVSIQVASLIG 242 (353)
T ss_dssp -----------------EEEETTEEEEEECHHHHHHSCSSHHHHHHHS
T ss_pred -----------------EEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999999999999999875 455677777764
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6.2e-57 Score=448.09 Aligned_cols=227 Identities=30% Similarity=0.556 Sum_probs=202.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|+++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++... ... +++||
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~-~~~---~r~ig 75 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL-SPE---KHDIA 75 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-CHH---HHTCE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC-chh---hCcEE
Confidence 58999999999888 99999999999999999999999999999999999999999999999997542 221 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++.... .... +++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~-~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~------- 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKK-IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT------- 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHC-CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcC-CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 99999999999999999999864322 2222 668899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+..+..+.+.|++++++ | +|+|+||||++++..+|||+
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g----------~tii~vTHd~~~~~~~adri---------------- 198 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNK----------LTVLHITHDQTEARIMADRI---------------- 198 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHCSEE----------------
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++.. +.+..+..|..
T Consensus 199 --------------~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 199 --------------AVVMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp --------------EEESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred --------------EEEECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 9999999999999998764 55667777765
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-56 Score=428.69 Aligned_cols=221 Identities=28% Similarity=0.492 Sum_probs=197.9
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..... +.+|
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~--~~~~~-~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE--EPHEV-RKLI 90 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT--CHHHH-HTTE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc--cHHHH-hhcE
Confidence 57999999999999999999999999999999999999999999999999999999999999998753 12222 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+|+.+||+||+.++.... +...++..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~------ 163 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV------ 163 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT------
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 99999999999999999999865322 23444556678899999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|++++++| +|||++|||++++..+|||+
T Consensus 164 -~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tiiivtHd~~~~~~~~d~v---------------- 216 (256)
T 1vpl_A 164 -NPRLAILDEPTSGLDVLNAREVRKILKQASQEG----------LTILVSSHNMLEVEFLCDRI---------------- 216 (256)
T ss_dssp -CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEEECCHHHHTTTCSEE----------------
T ss_pred -CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHHHHHCCEE----------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 217 --------------~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 217 --------------ALIHNGTIVETGTVEELK 234 (256)
T ss_dssp --------------EEEETTEEEEEEEHHHHH
T ss_pred --------------EEEECCEEEEecCHHHHH
Confidence 999999999999888774
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.2e-56 Score=419.13 Aligned_cols=226 Identities=32% Similarity=0.501 Sum_probs=195.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++... .. .+.+||
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~---~~~~i~ 73 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PP---ERRGIG 73 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CT---TTSCCB
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-ch---hhCcEE
Confidence 4789999999986 49999999999 99999999999999999999999999999999999987542 11 133699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+.+||+||+.++.... .....++++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------- 143 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI------- 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 9999999999999999999864211 112225678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..++++|++++++ | +|+|++|||++++..+|||+
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~d~i---------------- 197 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD----------VPILHVTHDLIEAAMLADEV---------------- 197 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT----------CCEEEEESCHHHHHHHCSEE----------------
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999764 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++....++.+..++.
T Consensus 198 --------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 227 (240)
T 2onk_A 198 --------------AVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227 (240)
T ss_dssp --------------EEEETTEEEEEECHHHHHHSCCSSHHHHGG
T ss_pred --------------EEEECCEEEEECCHHHHHhCchHHHHHHhc
Confidence 999999999999888875322445555543
No 21
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.1e-56 Score=427.93 Aligned_cols=235 Identities=27% Similarity=0.410 Sum_probs=196.2
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC--CCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA--GLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~--~~~~~~~~ 164 (382)
...++|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .. .....
T Consensus 17 ~~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~-~~~~~ 95 (279)
T 2ihy_A 17 GSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGY-SAETV 95 (279)
T ss_dssp --CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---C-CHHHH
T ss_pred CCCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccC-CHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999999999998864 22 12222
Q ss_pred ccceEEEEecCCCC-C-CCCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAAL-F-DSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l-~-~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
+.+||||||++.+ + +.+||+||+.++.... .....++..+++.++++.+||.++.++++.+|||||||||+|||
T Consensus 96 -~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAr 174 (279)
T 2ihy_A 96 -RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIAR 174 (279)
T ss_dssp -HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred -cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 3369999999764 3 3469999998864211 11122344567889999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEE--EEEccCHHHHHHhhchhcccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY--VVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~ti--IivTHdl~~~~~~aDrv~~~~ 317 (382)
||+. +|++|||||||+|||+.++..++++|+++.++| +|| |+||||++++.++|||+
T Consensus 175 aL~~-------~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tv~~iivtHd~~~~~~~~d~v---- 233 (279)
T 2ihy_A 175 ALMG-------QPQVLILDEPAAGLDFIARESLLSILDSLSDSY----------PTLAMIYVTHFIEEITANFSKI---- 233 (279)
T ss_dssp HHHT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC----------TTCEEEEEESCGGGCCTTCCEE----
T ss_pred HHhC-------CCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC----------CEEEEEEEecCHHHHHHhCCEE----
Confidence 9997 699999999999999999999999999998766 489 99999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|++++.|+++++... +.+..++
T Consensus 234 --------------------------~~l~~G~i~~~g~~~~~~~~--~~~~~~~ 260 (279)
T 2ihy_A 234 --------------------------LLLKDGQSIQQGAVEDILTS--ENMSRFF 260 (279)
T ss_dssp --------------------------EEEETTEEEEEEEHHHHCSH--HHHHHHH
T ss_pred --------------------------EEEECCEEEEECCHHHHhcc--HHHHHHh
Confidence 99999999999988887632 3344444
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-55 Score=420.68 Aligned_cols=217 Identities=37% Similarity=0.590 Sum_probs=190.7
Q ss_pred eEEEEeEEEEeC--C---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFG--E---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg--~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+|+|+ + +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~----~~~- 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG----YEI- 76 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH----HHH-
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch----HHh-
Confidence 689999999997 4 679999999999999999999999999999999999999999999999998642 122
Q ss_pred cceEEEEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc--ccccCCCCCCChHHHHHHHHHHHHh
Q 016804 166 GLRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 166 ~~~Ig~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~--~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+.+||||||++ .+++.+||+||+.++.... ...++..+++.++++.+||. ++.++++.+|||||||||+|||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~ 154 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV 154 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH
Confidence 33699999996 4556789999999864321 22222345678899999999 9999999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||+|||+.++..+.++|++++++| +|||+||||++++..+|||+
T Consensus 155 ~-------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tii~vtHd~~~~~~~~d~v--------- 208 (266)
T 2yz2_A 155 H-------EPDILILDEPLVGLDREGKTDLLRIVEKWKTLG----------KTVILISHDIETVINHVDRV--------- 208 (266)
T ss_dssp T-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCCTTTGGGCSEE---------
T ss_pred c-------CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE---------
Confidence 7 699999999999999999999999999997766 59999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 209 ---------------------~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 209 ---------------------VVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp ---------------------EEEETTEEEEEEEHHHHH
T ss_pred ---------------------EEEECCEEEEeCCHHHHh
Confidence 999999999999887765
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.7e-55 Score=416.69 Aligned_cols=220 Identities=26% Similarity=0.411 Sum_probs=187.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++... ......+..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~-~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL-SPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS-CHHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC-CHHHHHhCc
Confidence 69999999999989999999999999999999999999999999999999 889999999999997643 222222335
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCC--CCHHHHHHHHHHHHHHcCC-cccccCCCCC-CChHHHHHHHHHHHHhcC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAVGL-KGVEDRLPSE-LSGGMKKRVALARSIIFD 244 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~--~~~~~~~~~v~~~L~~~gL-~~~~~~~~~~-LSGGqrQRVaIArAL~~~ 244 (382)
++||||++.+|+.+||+||+.++...... ....+..+++.++++.+|+ .+..++++.+ |||||||||+|||||++
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~- 160 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL- 160 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH-
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc-
Confidence 89999999999999999999886532111 2334445678899999999 5889999999 99999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh-hchhccccccccch
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQIFGHID 323 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~-aDrv~~~~~~~~~~ 323 (382)
+|++|||||||+|||+.++..+.++|++++++| +|||+||||++++..+ |||+
T Consensus 161 ------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~~d~v---------- 214 (250)
T 2d2e_A 161 ------EPTYAVLDETDSGLDIDALKVVARGVNAMRGPN----------FGALVITHYQRILNYIQPDKV---------- 214 (250)
T ss_dssp ------CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTT----------CEEEEECSSSGGGGTSCCSEE----------
T ss_pred ------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhcCCEE----------
Confidence 599999999999999999999999999996555 5999999999999887 5877
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEeccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTH 358 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~ 358 (382)
++|++|++++.|+++
T Consensus 215 --------------------~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 215 --------------------HVMMDGRVVATGGPE 229 (250)
T ss_dssp --------------------EEEETTEEEEEESHH
T ss_pred --------------------EEEECCEEEEEeCHH
Confidence 999999999999765
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.1e-54 Score=416.73 Aligned_cols=224 Identities=29% Similarity=0.428 Sum_probs=191.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.++|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++... ......+
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~-~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL-SPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGS-CHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcC-CHHHHhh
Confidence 4579999999999989999999999999999999999999999999999999 478999999999987543 2222222
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhh----cC--CCCHHHHHHHHHHHHHHcCCc-ccccCCCC-CCChHHHHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYE----NS--KMRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALA 238 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~----~~--~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~-~LSGGqrQRVaIA 238 (382)
..|+||||++.+|+.+||.+|+.+.... .. ..+.++..+++.++++.+||. ...++++. +|||||||||+||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 3499999999999999999999875411 11 123445567788999999996 57888887 5999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh-hchhcccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQ 317 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~-aDrv~~~~ 317 (382)
|||+. +|+||||||||+|||+.++..++++|++++++| +|||++|||++++..+ |||+
T Consensus 177 raL~~-------~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tviivtHd~~~~~~~~~d~v---- 235 (267)
T 2zu0_C 177 QMAVL-------EPELCILDESDSGLDIDALKVVADGVNSLRDGK----------RSFIIVTHYQRILDYIKPDYV---- 235 (267)
T ss_dssp HHHHH-------CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSS----------CEEEEECSSGGGGGTSCCSEE----
T ss_pred HHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeeCHHHHHhhcCCEE----
Confidence 99997 699999999999999999999999999986555 5999999999998876 8877
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+++++
T Consensus 236 --------------------------~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 236 --------------------------HVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp --------------------------EEEETTEEEEEECTTHH
T ss_pred --------------------------EEEECCEEEEEcCHHHH
Confidence 99999999999987765
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=8.4e-54 Score=407.73 Aligned_cols=210 Identities=22% Similarity=0.339 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +.+
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~---------------~~~ 67 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---------------YQS 67 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---------------CSC
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---------------ecc
Confidence 3799999999998 888999999999999999999999999999999999999999999982 125
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
||||||++.+++.+||+||+.++.....+ ....+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-- 145 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS-- 145 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc--
Confidence 99999999999889999999987532211 1223445678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++ | .|+|++|||++++.++|||+
T Consensus 146 -----~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~d~v----------- 199 (253)
T 2nq2_C 146 -----ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN----------MTVVFTTHQPNQVVAIANKT----------- 199 (253)
T ss_dssp -----TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSC----------CEEEEEESCHHHHHHHCSEE-----------
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999876 5 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+ ++.|+++++..
T Consensus 200 -------------------~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 200 -------------------LLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp -------------------EEEETTE-EEEEEHHHHCC
T ss_pred -------------------EEEeCCe-EecCCHHHHhC
Confidence 9999999 99998888753
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.2e-54 Score=415.57 Aligned_cols=227 Identities=25% Similarity=0.422 Sum_probs=190.1
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.+|+++||+|+|++ +++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ..... +
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~-~~~~~-~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY-DHHYL-H 92 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB-CHHHH-H
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC-CHHHH-h
Confidence 47999999999986 7899999999999999999999999999999999999999999999999987542 22222 2
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHH-----HHHHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI-----SELVKENLAAV--GLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~-----~~~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
.+||||||++.+|+ .||+||+.++.... ...++. ...+.++++.+ |+....++++.+|||||||||+|||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 93 TQVAAVGQEPLLFG-RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHEEEECSSCCCCS-SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHH
T ss_pred ccEEEEecCCcccc-ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHH
Confidence 36999999999997 59999999864211 111211 12345677888 7888889999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||+. +|+||||||||+|||+.++..++++|+++.++ | +|+|+||||++++.. |||+
T Consensus 170 aL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g----------~tviivtHd~~~~~~-~d~v----- 226 (271)
T 2ixe_A 170 ALIR-------KPRLLILDNATSALDAGNQLRVQRLLYESPEWAS----------RTVLLITQQLSLAER-AHHI----- 226 (271)
T ss_dssp HHTT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTT----------SEEEEECSCHHHHTT-CSEE-----
T ss_pred HHhc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcC----------CEEEEEeCCHHHHHh-CCEE-----
Confidence 9997 69999999999999999999999999998653 4 599999999999864 8877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHH
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQ 369 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~ 369 (382)
++|++|+|++.|+++++......+.+
T Consensus 227 -------------------------~~l~~G~i~~~g~~~~l~~~~~~~~~ 252 (271)
T 2ixe_A 227 -------------------------LFLKEGSVCEQGTHLQLMERGGCYRS 252 (271)
T ss_dssp -------------------------EEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred -------------------------EEEECCEEEEECCHHHHHhCcHHHHH
Confidence 99999999999988887654444543
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.4e-54 Score=407.51 Aligned_cols=214 Identities=31% Similarity=0.529 Sum_probs=182.5
Q ss_pred eEEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~y--g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
-|+++||+|+| +++++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .... +.+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~-~~~~-~~~ 84 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD-PNWL-RRQ 84 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC-HHHH-HHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHH-Hhc
Confidence 38999999999 4678999999999999999999999999999999999999999999999999976432 2222 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqrQRVaI 237 (382)
||||||++.+|+ .||+||+.++. .... .+++.++++.+++.++.+++ +.+|||||||||+|
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~i 156 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLAN---PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 156 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTC---TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHH
T ss_pred EEEEeCCCcccc-ccHHHHHhccC---CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHH
Confidence 999999999997 59999998753 1122 23456677888876655544 58999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||++ +|++|||||||++||+.++..++++|+++. +| +|+|+||||++.+. .|||+
T Consensus 157 AraL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g----------~tviivtH~~~~~~-~~d~v---- 213 (247)
T 2ff7_A 157 ARALVN-------NPKILIFDEATSALDYESEHVIMRNMHKIC-KG----------RTVIIIAHRLSTVK-NADRI---- 213 (247)
T ss_dssp HHHHTT-------CCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TT----------SEEEEECSSGGGGT-TSSEE----
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CC----------CEEEEEeCCHHHHH-hCCEE----
Confidence 999997 699999999999999999999999999995 45 59999999999886 48877
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|++++.|+++++...
T Consensus 214 --------------------------~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 214 --------------------------IVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp --------------------------EEEETTEEEEEECHHHHHTS
T ss_pred --------------------------EEEECCEEEEECCHHHHHhC
Confidence 99999999999988887644
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.2e-54 Score=420.29 Aligned_cols=215 Identities=29% Similarity=0.479 Sum_probs=183.3
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+|
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~-~~~~-r~~i 130 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT-QASL-RSHI 130 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC-HHHH-HHTE
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC-HHHH-hcce
Confidence 499999999995 578999999999999999999999999999999999999999999999999987643 2222 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccc-----------cCCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~-----------~~~~~~LSGGqrQRVaIA 238 (382)
|||||++.+|+ .||+|||.++... ... +++.++++.+++.++. .+.+.+|||||||||+||
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~---~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVT---AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTT---CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEecCCccCc-ccHHHHHHhhccc---CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 99999999996 5999999986421 222 2345566666665544 444579999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||++ +|+||||||||++||+.++..+++.|+++.+. +|+|+||||++.+.. ||||
T Consensus 203 RAL~~-------~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~-----------~Tvi~itH~l~~~~~-aD~i----- 258 (306)
T 3nh6_A 203 RTILK-------APGIILLDEATSALDTSNERAIQASLAKVCAN-----------RTTIVVAHRLSTVVN-ADQI----- 258 (306)
T ss_dssp HHHHH-------CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTT-----------SEEEEECCSHHHHHT-CSEE-----
T ss_pred HHHHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEEcChHHHHc-CCEE-----
Confidence 99998 59999999999999999999999999998653 499999999999986 8877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
++|++|+|++.|+++++....
T Consensus 259 -------------------------~vl~~G~iv~~G~~~el~~~~ 279 (306)
T 3nh6_A 259 -------------------------LVIKDGCIVERGRHEALLSRG 279 (306)
T ss_dssp -------------------------EEEETTEEEEEECHHHHHHHT
T ss_pred -------------------------EEEECCEEEEECCHHHHHhcC
Confidence 999999999999888877543
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.6e-53 Score=405.16 Aligned_cols=213 Identities=25% Similarity=0.392 Sum_probs=188.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++.... .... +.+|
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~-~~~~-~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS-ATKL-ALHR 75 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC-HHHH-HHHE
T ss_pred cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC-HHHH-hceE
Confidence 37999999986 6999999999999999999999999999999999999999 99999999875432 2222 2359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+|+.+||+||+.++... ... .+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~------ 143 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHD--KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ------ 143 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSS--TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH------
T ss_pred EEECCCCccCCCCcHHHHHHHhhcc--CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 9999999999989999999885311 112 4567889999999999999999999999999999999998
Q ss_pred CCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 250 VEPE-------VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 250 ~~P~-------iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+|+ +|||||||+|||+.++..+.++|+++.++| +|+|++|||++++.++|||+
T Consensus 144 -~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tviivtHd~~~~~~~~d~v--------- 203 (249)
T 2qi9_C 144 -ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG----------LAIVMSSHDLNHTLRHAHRA--------- 203 (249)
T ss_dssp -HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEE---------
T ss_pred -CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE---------
Confidence 588 999999999999999999999999997766 59999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 204 ---------------------~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 204 ---------------------WLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp ---------------------EEEETTEEEEEEEHHHHSC
T ss_pred ---------------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998888764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=8.6e-54 Score=404.47 Aligned_cols=225 Identities=29% Similarity=0.515 Sum_probs=188.9
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
||+++||+|+| +++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... .+.+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~--~~~~i 78 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WRSQI 78 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSC--CTTTC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHH--HHhhE
Confidence 58999999999 6678999999999999999999999999999999999999999999999999976432211 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqrQRVaIA 238 (382)
|||||++.+|+ .||+||+.+++. .... .+++.++++.+++.++.+++ +.+|||||||||+||
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA 151 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLE--GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTT--SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcccc-ccHHHHHhhhcc--CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence 99999999998 599999988531 1122 23467788899987766554 579999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||++ +|++|||||||+|||+.++..+.+.|+++. ++ +|+|++|||++.+. .|||+
T Consensus 152 ral~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~----------~tvi~vtH~~~~~~-~~d~v----- 207 (243)
T 1mv5_A 152 RAFLR-------NPKILMLDEATASLDSESESMVQKALDSLM-KG----------RTTLVIAHRLSTIV-DADKI----- 207 (243)
T ss_dssp HHHHH-------CCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TT----------SEEEEECCSHHHHH-HCSEE-----
T ss_pred HHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCChHHHH-hCCEE-----
Confidence 99997 599999999999999999999999999997 55 59999999999886 58877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++... ......++..
T Consensus 208 -------------------------~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 237 (243)
T 1mv5_A 208 -------------------------YFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (243)
T ss_dssp -------------------------EEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred -------------------------EEEECCEEEEeCCHHHHHhc-cHHHHHHHHh
Confidence 99999999999988887643 3444555543
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-53 Score=397.19 Aligned_cols=200 Identities=20% Similarity=0.342 Sum_probs=177.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
..+|+++||+++|++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. . .+.+
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~--~~~~ 79 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----K--VKGK 79 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----G--GGGG
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----h--hcCc
Confidence 457999999999998 9999999999999999999999999999999999999999999999999863 1 1336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||||||++.+|+.+||+||+.++..... .. .+ .+++.++++.+|+++. ++++.+|||||||||+|||||+.
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~-~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~----- 150 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYG-VK-VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV----- 150 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTT-CC-CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS-----
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcC-Cc-hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHh-----
Confidence 9999999999999999999998653222 11 12 4567889999999988 99999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
+|++|||||||++||+.++..+.++|+++.++| +|||++|||++++..+|||++++.
T Consensus 151 --~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g----------~tiiivtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 151 --NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK----------GIVIISSREELSYCDVNENLHKYS 207 (214)
T ss_dssp --CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH----------SEEEEEESSCCTTSSEEEEGGGGB
T ss_pred --CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEeC
Confidence 699999999999999999999999999998665 599999999999999999995543
No 32
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.2e-51 Score=433.68 Aligned_cols=276 Identities=22% Similarity=0.359 Sum_probs=220.6
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+......+...+..++.++..++... ..........+|+.+....|+.... . . . +
T Consensus 280 t~g~l~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~-~--------~---------~--~ 334 (582)
T 3b5x_A 280 TPGTFTVVFSAMFGLMRPLKALTSVT-----SEFQRGMAACQTLFGLMDLETERDN-G--------K---------Y--E 334 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcCCC-C--------C---------C--C
Confidence 33445555556666677777776666 6677788888999888876642110 0 0 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
......+|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..
T Consensus 335 ~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-~~ 413 (582)
T 3b5x_A 335 AERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK-LT 413 (582)
T ss_pred CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC-HH
Confidence 0111235999999999974 67999999999999999999999999999999999999999999999999986542 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGq 231 (382)
.. +.+||||||++.+|+. ||+||+.++.. ...+ ++++.++++.++++++.++.| .+|||||
T Consensus 414 ~~-~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 414 NL-RRHFALVSQNVHLFND-TIANNIAYAAE--GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred HH-hcCeEEEcCCCccccc-cHHHHHhccCC--CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 22 3369999999999984 99999988531 1122 345678888888877766654 7999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||++|||||++ +|++|||||||++||+.++..+.+.|+++.+ | +|+|+||||++.+. .||
T Consensus 486 ~qr~~iAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~~~~~~-~~d 546 (582)
T 3b5x_A 486 RQRVAIARALLR-------DAPVLILDEATSALDTESERAIQAALDELQK-N----------KTVLVIAHRLSTIE-QAD 546 (582)
T ss_pred HHHHHHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHH-hCC
Confidence 999999999997 5999999999999999999999999999864 5 59999999999986 588
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
|+ ++|++|+++++|+++++...
T Consensus 547 ~i------------------------------~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 547 EI------------------------------LVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred EE------------------------------EEEECCEEEEECCHHHHHhC
Confidence 77 99999999999988887654
No 33
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.4e-51 Score=432.32 Aligned_cols=277 Identities=24% Similarity=0.331 Sum_probs=214.3
Q ss_pred cchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 016804 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (382)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (382)
.....+...+..++.++..++... ..........+|+.+....|+...... . . .++.
T Consensus 279 g~l~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~----~------------~--~~~~ 335 (595)
T 2yl4_A 279 GELSSFLMYAFWVGISIGGLSSFY-----SELMKGLGAGGRLWELLEREPKLPFNE----G------------V--ILNE 335 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCCCSSCSSC----S------------B--CCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCccCCCC----C------------C--CCCc
Confidence 344444555555667776666555 556677788889988887664211000 0 0 0001
Q ss_pred CCcce-EEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 87 DGDVL-IDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 87 ~~~~~-I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
..... |+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..
T Consensus 336 ~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~-~~ 414 (595)
T 2yl4_A 336 KSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLN-PV 414 (595)
T ss_dssp TTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBC-HH
T ss_pred CCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCC-HH
Confidence 11123 999999999974 46999999999999999999999999999999999999999999999999986542 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGq 231 (382)
.. +.+||||||++.+|+ .||+||+.++.......+ ++++.++++.++++++.++. +.+|||||
T Consensus 415 ~~-~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq 488 (595)
T 2yl4_A 415 WL-RSKIGTVSQEPILFS-CSIAENIAYGADDPSSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 488 (595)
T ss_dssp HH-HHSEEEECSSCCCCS-SBHHHHHHTTSSSTTTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHH
T ss_pred HH-HhceEEEccCCcccC-CCHHHHHhhcCCCccccC----HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHH
Confidence 22 236999999999997 599999998642111122 34567889999887655444 38999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||++|||||++ +|++|||||||++||+.++..+.+.|+++.+ + +|+|+||||++++.. ||
T Consensus 489 ~qrv~iAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~~~~~~~-~d 549 (595)
T 2yl4_A 489 KQRIAIARALLK-------NPKILLLDEATSALDAENEYLVQEALDRLMD-G----------RTVLVIAHRLSTIKN-AN 549 (595)
T ss_dssp HHHHHHHHHHHH-------CCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-T----------SEEEEECCCHHHHHH-SS
T ss_pred HHHHHHHHHHHc-------CCCEEEEECcccCCCHHHHHHHHHHHHHHhc-C----------CEEEEEecCHHHHHc-CC
Confidence 999999999998 5999999999999999999999999999976 4 499999999999864 88
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
|| ++|++|+|++.|+++++..
T Consensus 550 ~i------------------------------~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 550 MV------------------------------AVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp EE------------------------------EEEETTEEEEEECSCC---
T ss_pred EE------------------------------EEEECCEEEEECCHHHHHh
Confidence 77 9999999999998888765
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.2e-52 Score=398.08 Aligned_cols=219 Identities=26% Similarity=0.460 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.+|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++| +|+|+++|+++... ..... +
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~-~~~~~-~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKY-NRNSI-R 92 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGB-CHHHH-H
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhc-CHHHH-h
Confidence 46999999999976 4699999999999999999999999999999999999987 89999999987542 22222 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-----------ccCCCCCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-----------EDRLPSELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-----------~~~~~~~LSGGqrQRV 235 (382)
.+||||||++.+|+ .||+||+.++.. ... .+++.++++.+++.++ .++++.+|||||||||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 93 SIIGIVPQDTILFN-ETIKYNILYGKL---DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred ccEEEEcCCCcccc-cCHHHHHhccCC---CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 36999999999997 599999988531 122 2345667777777543 2467789999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||+. +|+||||||||++||+.++..+++.|+++.+ + +|+|+||||++.+. .|||+
T Consensus 165 ~lAraL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~----------~tviivtH~~~~~~-~~d~i-- 223 (260)
T 2ghi_A 165 AIARCLLK-------DPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-N----------RTLIIIAHRLSTIS-SAESI-- 223 (260)
T ss_dssp HHHHHHHH-------CCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-T----------SEEEEECSSGGGST-TCSEE--
T ss_pred HHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHH-hCCEE--
Confidence 99999997 5999999999999999999999999999954 4 59999999999875 48877
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHH
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIV 368 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~ 368 (382)
++|++|++++.|+++++......+.
T Consensus 224 ----------------------------~~l~~G~i~~~g~~~~l~~~~~~~~ 248 (260)
T 2ghi_A 224 ----------------------------ILLNKGKIVEKGTHKDLLKLNGEYA 248 (260)
T ss_dssp ----------------------------EEEETTEEEEEECHHHHHHHTSHHH
T ss_pred ----------------------------EEEECCEEEEECCHHHHHhcChHHH
Confidence 9999999999998888765444443
No 35
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.3e-51 Score=433.44 Aligned_cols=275 Identities=22% Similarity=0.350 Sum_probs=219.6
Q ss_pred ccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCC
Q 016804 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (382)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
......+...+..++.++..+.... ..........+|+.+....|+.... . . . +.
T Consensus 281 ~g~l~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~-~--------~---------~--~~ 335 (582)
T 3b60_A 281 AGTITVVFSSMIALMRPLKSLTNVN-----AQFQRGMAACQTLFAILDSEQEKDE-G--------K---------R--VI 335 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSCCSCCC-C--------C---------B--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCccC-C--------C---------C--CC
Confidence 3444555556666777887776666 6677788888999988877643210 0 0 0 00
Q ss_pred CCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 86 DDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.....+|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... ...
T Consensus 336 ~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~-~~~ 414 (582)
T 3b60_A 336 DRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT-LAS 414 (582)
T ss_dssp SCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC-HHH
T ss_pred CCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC-HHH
Confidence 011235999999999973 67999999999999999999999999999999999999999999999999986542 222
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMK 232 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqr 232 (382)
. +.+||||||++.+|+. ||+||+.++.. ...+ ++++.++++.++++++.++. +.+||||||
T Consensus 415 ~-~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 415 L-RNQVALVSQNVHLFND-TVANNIAYART--EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp H-HHTEEEECSSCCCCSS-BHHHHHHTTTT--SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred H-HhhCeEEccCCcCCCC-CHHHHHhccCC--CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 2 2369999999999985 99999998531 1122 24467788888887666554 479999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
||++|||||++ +|++|||||||++||+.++..+.+.|+++.+ | +|+|+||||++.+. .|||
T Consensus 487 qrl~iAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~~~~~~-~~d~ 547 (582)
T 3b60_A 487 QRIAIARALLR-------DSPILILDEATSALDTESERAIQAALDELQK-N----------RTSLVIAHRLSTIE-QADE 547 (582)
T ss_dssp HHHHHHHHHHH-------CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-T----------SEEEEECSCGGGTT-TCSE
T ss_pred HHHHHHHHHHh-------CCCEEEEECccccCCHHHHHHHHHHHHHHhC-C----------CEEEEEeccHHHHH-hCCE
Confidence 99999999998 5999999999999999999999999999965 5 59999999999886 5887
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
| ++|++|++++.|+++++...
T Consensus 548 i------------------------------~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 548 I------------------------------VVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp E------------------------------EEEETTEEEEEECHHHHHHH
T ss_pred E------------------------------EEEECCEEEEecCHHHHHHc
Confidence 7 99999999999988887643
No 36
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.3e-51 Score=433.30 Aligned_cols=276 Identities=25% Similarity=0.358 Sum_probs=215.2
Q ss_pred chhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC
Q 016804 8 GSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDD 87 (382)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (382)
....+......++.++..+.+.. ..........+|+.+....|+........ .+...
T Consensus 279 ~l~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~------------------~~~~~ 335 (578)
T 4a82_A 279 TLAAFVGYLELLFGPLRRLVASF-----TTLTQSFASMDRVFQLIDEDYDIKNGVGA------------------QPIEI 335 (578)
T ss_dssp HHHHHHHTHHHHTTHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCCCSSCCCTTC------------------CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccCCCCc------------------cccCC
Confidence 33344444445566666655555 56677788889999888776432111000 00011
Q ss_pred CcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 88 GDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
....|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ....
T Consensus 336 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-~~~~- 413 (578)
T 4a82_A 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL-TGSL- 413 (578)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC-HHHH-
T ss_pred CCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHH-
Confidence 1234999999999964 57999999999999999999999999999999999999999999999999986543 2222
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKR 234 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQR 234 (382)
+.+||||||++.+|+. ||+||+.++.. ... ++++.++++.+++.++.++.| .+||||||||
T Consensus 414 r~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qr 485 (578)
T 4a82_A 414 RNQIGLVQQDNILFSD-TVKENILLGRP---TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 485 (578)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHGGGCS---SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHH
T ss_pred hhheEEEeCCCccCcc-cHHHHHhcCCC---CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHH
Confidence 3369999999999985 99999988531 122 234667788888776666555 5899999999
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
++|||||++ +|++|||||||++||+.++..+.+.++++.+ + +|+|+||||++.+.. ||||
T Consensus 486 v~lAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~l~~~~~-~d~i- 545 (578)
T 4a82_A 486 LSIARIFLN-------NPPILILDEATSALDLESESIIQEALDVLSK-D----------RTTLIVAHRLSTITH-ADKI- 545 (578)
T ss_dssp HHHHHHHHH-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-T----------SEEEEECSSGGGTTT-CSEE-
T ss_pred HHHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHHc-CCEE-
Confidence 999999998 5999999999999999999999999999854 3 499999999999864 8877
Q ss_pred cccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCC
Q 016804 315 LFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSN 365 (382)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~ 365 (382)
++|++|+|+++|+++|+.....
T Consensus 546 -----------------------------~~l~~G~i~~~g~~~el~~~~~ 567 (578)
T 4a82_A 546 -----------------------------VVIENGHIVETGTHRELIAKQG 567 (578)
T ss_dssp -----------------------------EEEETTEEEEEECHHHHHHTTS
T ss_pred -----------------------------EEEECCEEEEECCHHHHHhCCc
Confidence 9999999999998888775443
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.4e-52 Score=398.44 Aligned_cols=207 Identities=25% Similarity=0.372 Sum_probs=183.7
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
||+++||+++|++ +++|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... . . +
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~---~-~-~ 73 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI---R-N-Y 73 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC---S-C-C
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch---H-H-h
Confidence 5899999999987 789999999999 9999999999999999999999999 9999999999987532 1 1 3
Q ss_pred ceEE-EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 167 LRIG-LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 167 ~~Ig-~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+|| ||||++.+ .+||+||+.++.... ... .+++.++++.+||. +..++++.+|||||||||+|||||+.
T Consensus 74 ~~i~~~v~Q~~~l--~~tv~enl~~~~~~~-~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~- 145 (263)
T 2pjz_A 74 IRYSTNLPEAYEI--GVTVNDIVYLYEELK-GLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS- 145 (263)
T ss_dssp TTEEECCGGGSCT--TSBHHHHHHHHHHHT-CCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT-
T ss_pred hheEEEeCCCCcc--CCcHHHHHHHhhhhc-chH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh-
Confidence 3699 99999987 689999999865322 122 34578899999999 99999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc-hhccccccccch
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD-RLCLFQIFGHID 323 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD-rv~~~~~~~~~~ 323 (382)
+|++|||||||++||+.++..+.+.|+++. .|+|++|||++++.++|| |+
T Consensus 146 ------~p~lllLDEPts~LD~~~~~~l~~~L~~~~-------------~tviivtHd~~~~~~~~d~~i---------- 196 (263)
T 2pjz_A 146 ------QPEIVGLDEPFENVDAARRHVISRYIKEYG-------------KEGILVTHELDMLNLYKEYKA---------- 196 (263)
T ss_dssp ------CCSEEEEECTTTTCCHHHHHHHHHHHHHSC-------------SEEEEEESCGGGGGGCTTSEE----------
T ss_pred ------CCCEEEEECCccccCHHHHHHHHHHHHHhc-------------CcEEEEEcCHHHHHHhcCceE----------
Confidence 699999999999999999999999998763 289999999999999999 88
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 197 --------------------~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 197 --------------------YFLVGNRLQGPISVSELL 214 (263)
T ss_dssp --------------------EEEETTEEEEEEEHHHHH
T ss_pred --------------------EEEECCEEEEecCHHHHH
Confidence 999999999999887765
No 38
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-52 Score=422.04 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=193.3
Q ss_pred ceEEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~y--g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..|+++||+|+| +++++|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|+++|+++.... .... ++
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~-~~~~-rr 94 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT-LEQW-RK 94 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC-HHHH-HH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC-hHHH-hC
Confidence 359999999999 66789999999999999999999999999999999999998 9999999999986542 2222 23
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCC-----------CChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-----------LSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~-----------LSGGqrQRVa 236 (382)
+||||||++.+|+ +||+||+.+.. ... .+++.++++.++|.++.+++|.+ |||||||||+
T Consensus 95 ~ig~v~Q~~~lf~-~tv~enl~~~~----~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva 165 (390)
T 3gd7_A 95 AFGVIPQKVFIFS-GTFRKNLDPNA----AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC 165 (390)
T ss_dssp TEEEESCCCCCCS-EEHHHHHCTTC----CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH
T ss_pred CEEEEcCCcccCc-cCHHHHhhhcc----ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH
Confidence 6999999999998 69999997421 122 34577899999999999999998 9999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||+. +|+||||||||++||+..+.++++.|+++.+ + +|+|+||||++.+ ..||||
T Consensus 166 lARAL~~-------~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~-~----------~tvi~vtHd~e~~-~~aDri--- 223 (390)
T 3gd7_A 166 LARSVLS-------KAKILLLDEPSAHLDPVTYQIIRRTLKQAFA-D----------CTVILCEARIEAM-LECDQF--- 223 (390)
T ss_dssp HHHHHHT-------TCCEEEEESHHHHSCHHHHHHHHHHHHTTTT-T----------SCEEEECSSSGGG-TTCSEE---
T ss_pred HHHHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEEcCHHHH-HhCCEE---
Confidence 9999997 6999999999999999999999999988643 3 5999999998755 458877
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|..
T Consensus 224 ---------------------------~vl~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 224 ---------------------------LVIEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp ---------------------------EEEETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred ---------------------------EEEECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 999999999999999976 567888888875
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.3e-51 Score=383.88 Aligned_cols=201 Identities=24% Similarity=0.410 Sum_probs=169.7
Q ss_pred ceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.+|+++||+|+|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 4699999999994 57899999999999999999999999999999999999999999999998
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccc-----------cCCCCCCChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~-----------~~~~~~LSGGqrQRVa 236 (382)
+|+|+||++.+|+. ||+||+.++.. .... ...++++.+++.+.. ++++.+|||||||||+
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVS----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSC----CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred EEEEEecCCcccCC-CHHHHhhccCC----cChH----HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 38999999999985 99999988531 1211 123445555554433 3345899999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL-IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~l-L~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
|||||++ +|++|||||||+|||+.++..+.+. ++++.+ + +|+|++|||++++. .|||+
T Consensus 141 lAral~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~----------~tvi~vtH~~~~~~-~~d~v-- 199 (229)
T 2pze_A 141 LARAVYK-------DADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-N----------KTRILVTSKMEHLK-KADKI-- 199 (229)
T ss_dssp HHHHHHS-------CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTT-T----------SEEEEECCCHHHHH-HCSEE--
T ss_pred HHHHHhc-------CCCEEEEECcccCCCHHHHHHHHHHHHHHhhC-C----------CEEEEEcCChHHHH-hCCEE--
Confidence 9999997 6999999999999999999999986 455543 4 59999999999886 48877
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|++++.|+++++...
T Consensus 200 ----------------------------~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 200 ----------------------------LILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp ----------------------------EEEETTEEEEEECHHHHHTC
T ss_pred ----------------------------EEEECCEEEEECCHHHHHhc
Confidence 99999999999988887643
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-51 Score=431.22 Aligned_cols=266 Identities=24% Similarity=0.388 Sum_probs=205.4
Q ss_pred hHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEE
Q 016804 16 TKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCR 95 (382)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 95 (382)
...++.++..++... .....+..+.+|+......|+........ . +.......|+++
T Consensus 289 ~~~~~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~----------------~--~~~~~~~~i~~~ 345 (587)
T 3qf4_A 289 LMQIMFSLMMIGNIL-----NFIVRASASAKRVLEVLNEKPAIEEADNA----------------L--ALPNVEGSVSFE 345 (587)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCSCCCCTTC----------------B--CCSCCCCCEEEE
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCccCCCCCc----------------c--ccCCCCCcEEEE
Confidence 333445555444443 45566777888998888776432111100 0 001112349999
Q ss_pred eEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 96 NVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 96 nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..+. +.+|||||
T Consensus 346 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~-~~~~-r~~i~~v~ 423 (587)
T 3qf4_A 346 NVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK-LKDL-RGHISAVP 423 (587)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC-HHHH-HHHEEEEC
T ss_pred EEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC-HHHH-HhheEEEC
Confidence 9999994 467999999999999999999999999999999999999999999999999986542 2222 33699999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCC-----------cccccCCCCCCChHHHHHHHHHHHHh
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-----------KGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL-----------~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
|++.+|+. ||+||+.++.. ....+ ++.++++.+++ +...++++.+||||||||++|||||+
T Consensus 424 Q~~~lf~~-tv~eni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 424 QETVLFSG-TIKENLKWGRE---DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp SSCCCCSE-EHHHHHTTTCS---SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred CCCcCcCc-cHHHHHhccCC---CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 99999975 99999987531 12222 23444555544 44456677899999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+ +|++|||||||++||+.++..+++.|+++.+ + +|+|+||||++.+. .||||
T Consensus 496 ~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~l~~~~-~~d~i--------- 547 (587)
T 3qf4_A 496 K-------KPKVLILDDCTSSVDPITEKRILDGLKRYTK-G----------CTTFIITQKIPTAL-LADKI--------- 547 (587)
T ss_dssp T-------CCSEEEEESCCTTSCHHHHHHHHHHHHHHST-T----------CEEEEEESCHHHHT-TSSEE---------
T ss_pred c-------CCCEEEEECCcccCCHHHHHHHHHHHHHhCC-C----------CEEEEEecChHHHH-hCCEE---------
Confidence 7 5999999999999999999999999999853 4 59999999999986 68877
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|+|+++|+++|+...
T Consensus 548 ---------------------~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 548 ---------------------LVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp ---------------------EEEETTEEEEEECHHHHHHH
T ss_pred ---------------------EEEECCEEEEECCHHHHHhC
Confidence 99999999999988887654
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-51 Score=435.41 Aligned_cols=263 Identities=24% Similarity=0.432 Sum_probs=209.4
Q ss_pred hhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEE
Q 016804 19 VSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVY 98 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 98 (382)
++.++..+.... ..........+|+......|+....... . +.......|+++||+
T Consensus 306 ~~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~-----------------~--~~~~~~~~i~~~~v~ 361 (598)
T 3qf4_B 306 FTRPLNELSNQF-----NMIQMALASAERIFEILDLEEEKDDPDA-----------------V--ELREVRGEIEFKNVW 361 (598)
T ss_dssp SHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTSCCCCCCSSC-----------------C--CCCSCCCCEEEEEEE
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCCC-----------------C--CCCCCCCeEEEEEEE
Confidence 344554444443 4556677788899988877753211000 0 000111249999999
Q ss_pred EEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC
Q 016804 99 KSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177 (382)
Q Consensus 99 ~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~ 177 (382)
|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... .... +.+||||||++.
T Consensus 362 ~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~-~~~~-r~~i~~v~Q~~~ 439 (598)
T 3qf4_B 362 FSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK-RSSL-RSSIGIVLQDTI 439 (598)
T ss_dssp CCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC-HHHH-HHHEEEECTTCC
T ss_pred EECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC-HHHH-HhceEEEeCCCc
Confidence 99964 67999999999999999999999999999999999999999999999999987643 2222 336999999999
Q ss_pred CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcCCC
Q 016804 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~ 246 (382)
+|+ .||+||+.++.. ..++ +++.++++.++++++.++.| .+||||||||++|||||++
T Consensus 440 lf~-~tv~eni~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~--- 508 (598)
T 3qf4_B 440 LFS-TTVKENLKYGNP---GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA--- 508 (598)
T ss_dssp CCS-SBHHHHHHSSST---TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT---
T ss_pred ccc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc---
Confidence 997 599999988531 1222 23567788888887777776 6999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+.++..+.+.|+++.+ | +|+|+||||++++.. ||||
T Consensus 509 ----~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~l~~~~~-~d~i------------- 559 (598)
T 3qf4_B 509 ----NPKILILDEATSNVDTKTEKSIQAAMWKLME-G----------KTSIIIAHRLNTIKN-ADLI------------- 559 (598)
T ss_dssp ----CCSEEEECCCCTTCCHHHHHHHHHHHHHHHT-T----------SEEEEESCCTTHHHH-CSEE-------------
T ss_pred ----CCCEEEEECCccCCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHHc-CCEE-------------
Confidence 5999999999999999999999999999864 4 599999999999876 8877
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
++|++|+|+++|+++|+....
T Consensus 560 -----------------~~l~~G~i~~~g~~~~l~~~~ 580 (598)
T 3qf4_B 560 -----------------IVLRDGEIVEMGKHDELIQKR 580 (598)
T ss_dssp -----------------EEECSSSEEECSCHHHHHHTT
T ss_pred -----------------EEEECCEEEEECCHHHHHhCC
Confidence 999999999999888876543
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.3e-50 Score=381.79 Aligned_cols=207 Identities=27% Similarity=0.403 Sum_probs=170.2
Q ss_pred eEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------~ 67 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------S 67 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---------------C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---------------E
Confidence 599999999997 57899999999999999999999999999999999999999999999998 2
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHH---HHHHcCCc-----ccccCCCCCCChHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE---NLAAVGLK-----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~---~L~~~gL~-----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
||||||++.++ .+||+||+.++.. ...+.. +++.+ +++.+++. ...++++.+|||||||||+||||
T Consensus 68 i~~v~Q~~~~~-~~tv~enl~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 68 VAYVPQQAWIQ-NDSLRENILFGCQ----LEEPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp EEEECSSCCCC-SEEHHHHHHTTSC----CCTTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEEcCCCcCC-CcCHHHHhhCccc----cCHHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 89999998765 6899999988542 111111 11111 12233321 13578899999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR---SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~---~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
|+. +|++|||||||+|||+.++..+++.|. ++. ++ +|+|+||||++.+. .|||+
T Consensus 142 L~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~----------~tviivtH~~~~~~-~~d~v---- 198 (237)
T 2cbz_A 142 VYS-------NADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KN----------KTRILVTHSMSYLP-QVDVI---- 198 (237)
T ss_dssp HHH-------CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TT----------SEEEEECSCSTTGG-GSSEE----
T ss_pred Hhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CC----------CEEEEEecChHHHH-hCCEE----
Confidence 997 599999999999999999999999985 343 34 59999999999875 68877
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHH
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPI 367 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~ 367 (382)
++|++|++++.|+++++......+
T Consensus 199 --------------------------~~l~~G~i~~~g~~~~~~~~~~~~ 222 (237)
T 2cbz_A 199 --------------------------IVMSGGKISEMGSYQELLARDGAF 222 (237)
T ss_dssp --------------------------EEEETTEEEEEECHHHHHHHTSHH
T ss_pred --------------------------EEEeCCEEEEeCCHHHHhhccHHH
Confidence 999999999999888876544444
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-49 Score=452.19 Aligned_cols=253 Identities=26% Similarity=0.416 Sum_probs=203.2
Q ss_pred hhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeEE
Q 016804 37 FYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSFK 113 (382)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~---~~iL~~vsl~ 113 (382)
...+...+.+|+...+..++........ ...++..++ |+++||+|+|++ .++|+||||+
T Consensus 1040 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~----------------~~~~~~~g~--I~f~nVsf~Y~~~~~~~VL~~isl~ 1101 (1321)
T 4f4c_A 1040 EYAKATFAGGIIFGMLRKISKIDSLSLA----------------GEKKKLYGK--VIFKNVRFAYPERPEIEILKGLSFS 1101 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSCTTCCC----------------SBCCCCCCC--EEEEEEEECCTTSCSSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCcccCCCccCC----------------CCCCCCCCe--EEEEEEEEeCCCCCCCccccceeEE
Confidence 3455666777888877666432111100 001122233 999999999964 3699999999
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~ 193 (382)
|++||.+|||||||||||||+++|.|+++|++|+|++||.|+..+.... . |.+|+||||+|.||+. ||+|||.+++.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~-l-R~~i~~V~Qdp~LF~g-TIreNI~~gld 1178 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEH-T-RSQIAIVSQEPTLFDC-SIAENIIYGLD 1178 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHH-H-HTTEEEECSSCCCCSE-EHHHHHSSSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHH-H-HhheEEECCCCEeeCc-cHHHHHhccCC
Confidence 9999999999999999999999999999999999999999998754333 3 3369999999999985 99999988652
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 194 ~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
. ...+ ++++.++++.++++++....| .+||||||||++|||||++ +|+|||||||||
T Consensus 1179 ~-~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr-------~~~ILiLDEaTS 1246 (1321)
T 4f4c_A 1179 P-SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR-------NPKILLLDEATS 1246 (1321)
T ss_dssp T-TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS-------CCSEEEEESCCC
T ss_pred C-CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh-------CCCEEEEeCccc
Confidence 1 1122 445788899999987766655 5799999999999999998 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccE
Q 016804 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYR 342 (382)
Q Consensus 263 gLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (382)
+||+++.+.+++.|+++.+. +|+|+|||+++++.+ ||||
T Consensus 1247 aLD~~tE~~Iq~~l~~~~~~-----------~TvI~IAHRLsTi~~-aD~I----------------------------- 1285 (1321)
T 4f4c_A 1247 ALDTESEKVVQEALDRAREG-----------RTCIVIAHRLNTVMN-ADCI----------------------------- 1285 (1321)
T ss_dssp STTSHHHHHHHHHHTTTSSS-----------SEEEEECSSSSTTTT-CSEE-----------------------------
T ss_pred cCCHHHHHHHHHHHHHHcCC-----------CEEEEeccCHHHHHh-CCEE-----------------------------
Confidence 99999999999999887543 599999999999876 5655
Q ss_pred EEEEeCCeEEEEecccccccCC
Q 016804 343 LIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 343 ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
+||++|+|+++|+++|++...
T Consensus 1286 -~Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1286 -AVVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp -EEESSSSEEEEECHHHHHHCC
T ss_pred -EEEECCEEEEECCHHHHHhCC
Confidence 999999999999888887543
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.4e-48 Score=437.91 Aligned_cols=274 Identities=24% Similarity=0.328 Sum_probs=214.9
Q ss_pred hhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCc
Q 016804 10 LLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGD 89 (382)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (382)
+.+......++.++..++... .....+....+|+.+.+..++........ .....+..+
T Consensus 356 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~---------------~~~~~~~~g- 414 (1321)
T 4f4c_A 356 LTTFSSVMMGSMALGLAGPQL-----AVLGTAQGAASGIYEVLDRKPVIDSSSKA---------------GRKDMKIKG- 414 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTTSCCSSCSSSC---------------CCCCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccccccc---------------cccCCCCCC-
Confidence 333344444455665555444 56667788889999988766422111100 000011122
Q ss_pred ceEEEEeEEEEeC---CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg---~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.|+++||+|+|+ ++++|+|+||+|++||.+|||||||||||||+++|.|+++|++|+|.+||.++..+... +. +
T Consensus 415 -~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~-~l-r 491 (1321)
T 4f4c_A 415 -DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLE-FL-R 491 (1321)
T ss_dssp -CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHH-HH-H
T ss_pred -cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHH-HH-h
Confidence 399999999996 35799999999999999999999999999999999999999999999999999876433 32 2
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRV 235 (382)
.+||||+|+|.||+ .||+|||.|+.. ..+ ++++.++++.++++++.++.| ..||||||||+
T Consensus 492 ~~i~~v~Q~~~Lf~-~TI~eNI~~g~~---~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 492 KNVAVVSQEPALFN-CTIEENISLGKE---GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp HHEEEECSSCCCCS-EEHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred hcccccCCcceeeC-CchhHHHhhhcc---cch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence 36999999999997 599999998631 122 345778899998877766665 58999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||++ +|+|||||||||+||+.++..+++.|.++.+. +|+|+|||+++.+.. ||+|
T Consensus 564 aiARAl~~-------~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~-----------~T~iiiaHrls~i~~-aD~I-- 622 (1321)
T 4f4c_A 564 AIARALVR-------NPKILLLDEATSALDAESEGIVQQALDKAAKG-----------RTTIIIAHRLSTIRN-ADLI-- 622 (1321)
T ss_dssp HHHHHHTT-------CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTT-----------SEEEEECSCTTTTTT-CSEE--
T ss_pred HHHHHHcc-------CCCEEEEecccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEcccHHHHHh-CCEE--
Confidence 99999997 59999999999999999999999999998753 599999999998864 6666
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
++|++|+|+++|+.+|+....
T Consensus 623 ----------------------------ivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 623 ----------------------------ISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp ----------------------------EEEETTEEEEEECHHHHHTTT
T ss_pred ----------------------------EEeeCCeeeccCCHHHHHHhh
Confidence 999999999999777776543
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.7e-48 Score=373.49 Aligned_cols=197 Identities=23% Similarity=0.392 Sum_probs=155.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||++.+ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++| +|
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------------RI 101 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---------------CE
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---------------EE
Confidence 469999999864 6799999999999999999999999999999999999999999999987 38
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc-----------CCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----------RLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~-----------~~~~~LSGGqrQRVaIA 238 (382)
+||||++.+|+. ||+||+. +.. .... .+.++++.+++.+..+ +.+.+|||||||||+||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GVS----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TTC----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Ccc----cchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 999999999985 9999997 421 1211 2334556666654333 33589999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL-~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
|||+. +|++|||||||+|||+.++..+++.+ +++. ++ +|||+||||++.+. .|||+
T Consensus 172 raL~~-------~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~----------~tviivtHd~~~~~-~~d~i---- 228 (290)
T 2bbs_A 172 RAVYK-------DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-AN----------KTRILVTSKMEHLK-KADKI---- 228 (290)
T ss_dssp HHHHS-------CCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TT----------SEEEEECCCHHHHH-HSSEE----
T ss_pred HHHHC-------CCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CC----------CEEEEEecCHHHHH-cCCEE----
Confidence 99997 69999999999999999999999864 4553 34 59999999999886 58877
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 229 --------------------------~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 229 --------------------------LILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp --------------------------EEEETTEEEEEECHHHHHH
T ss_pred --------------------------EEEECCeEEEeCCHHHHhh
Confidence 9999999999998888753
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.3e-46 Score=426.35 Aligned_cols=215 Identities=29% Similarity=0.467 Sum_probs=180.8
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..+. +.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~-~~~~-r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN-VRYL-RE 464 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC-HHHH-HH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC-HHHH-Hh
Confidence 3999999999964 46999999999999999999999999999999999999999999999999987653 3332 23
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccc-----------cCCCCCCChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~-----------~~~~~~LSGGqrQRVa 236 (382)
+||||||++.+|+. ||+|||.++.. ..+.+ ++.++++.+++.++. .+.+.+|||||||||+
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qria 536 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGRE---DVTMD----EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA 536 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCS---SCCHH----HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHH
T ss_pred heEEEcCCCccCCc-cHHHHHhcCCC---CCCHH----HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHH
Confidence 69999999999985 99999998642 12333 344555665554433 3445689999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||++ +|+|||||||||+||+.++..+++.++++.+ | +|+|+|||+++++.. ||||
T Consensus 537 iARal~~-------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~l~~i~~-~d~i--- 594 (1284)
T 3g5u_A 537 IARALVR-------NPKILLLDEATSALDTESEAVVQAALDKARE-G----------RTTIVIAHRLSTVRN-ADVI--- 594 (1284)
T ss_dssp HHHHHHH-------CCSEEEEESTTCSSCHHHHHHHHHHHHHHHT-T----------SEEEEECSCHHHHTT-CSEE---
T ss_pred HHHHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHHc-CCEE---
Confidence 9999998 5999999999999999999999999988754 4 599999999999976 7877
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
++|++|+|+++|+++++....
T Consensus 595 ---------------------------~vl~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 595 ---------------------------AGFDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp ---------------------------EECSSSCCCCEECHHHHHHTT
T ss_pred ---------------------------EEEECCEEEEECCHHHHHhCC
Confidence 999999999999888876543
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.9e-46 Score=424.97 Aligned_cols=220 Identities=26% Similarity=0.516 Sum_probs=184.6
Q ss_pred eEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~---~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.... .... +.
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~-r~ 1107 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN-VQWL-RA 1107 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC-HHHH-TT
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC-HHHH-Hh
Confidence 49999999999753 6999999999999999999999999999999999999999999999999987643 3332 34
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVa 236 (382)
+||||||++.+|+ .||+||+.++.. ....+. +++.++++.+++.++.++.| .+|||||||||+
T Consensus 1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~-~~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~ 1181 (1284)
T 3g5u_A 1108 QLGIVSQEPILFD-CSIAENIAYGDN-SRVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181 (1284)
T ss_dssp SCEEEESSCCCCS-SBHHHHHTCCCS-SCCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH
T ss_pred ceEEECCCCcccc-ccHHHHHhccCC-CCCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH
Confidence 6999999999996 699999987532 111232 33556677777776666554 589999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||++ +|+||||||||++||+.+++.+++.|+++. +| +|+|+||||++++.. ||||
T Consensus 1182 iARal~~-------~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~----------~tvi~isH~l~~i~~-~dri--- 1239 (1284)
T 3g5u_A 1182 IARALVR-------QPHILLLDEATSALDTESEKVVQEALDKAR-EG----------RTCIVIAHRLSTIQN-ADLI--- 1239 (1284)
T ss_dssp HHHHHHH-------CCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SS----------SCEEEECSCTTGGGS-CSEE---
T ss_pred HHHHHHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CC----------CEEEEEecCHHHHHc-CCEE---
Confidence 9999998 599999999999999999999999998864 34 599999999999854 8877
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHH
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPI 367 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~ 367 (382)
++|++|+|++.|+++++......+
T Consensus 1240 ---------------------------~vl~~G~i~~~g~~~~l~~~~g~y 1263 (1284)
T 3g5u_A 1240 ---------------------------VVIQNGKVKEHGTHQQLLAQKGIY 1263 (1284)
T ss_dssp ---------------------------EEEETBEEEEEECHHHHHHSCSHH
T ss_pred ---------------------------EEEECCEEEEECCHHHHHhCCCHH
Confidence 999999999999888887654433
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.8e-44 Score=373.52 Aligned_cols=207 Identities=28% Similarity=0.367 Sum_probs=180.5
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+.++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .
T Consensus 284 ~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~---------------~ 347 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD---------------L 347 (538)
T ss_dssp CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC---------------C
T ss_pred CCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC---------------c
Confidence 45789999999999874 7999999999999999999999999999999999999999999851 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+||||||++.+++.+||.+++....... .. ..+.+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~--~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~---- 418 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASK--LN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR---- 418 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH--HT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTS----
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccC--CC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 5999999998777789999886531111 11 12457789999999989999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..++++|+++.+ .| .|||+||||++++..+|||+
T Consensus 419 ---~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~~drv------------- 472 (538)
T 1yqt_A 419 ---DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE----------KTALVVEHDVLMIDYVSDRL------------- 472 (538)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEE-------------
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 6999999999999999999999999999974 45 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeC--CeEEEEeccccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYE--GKIVWQGMTHEFTS 362 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~--G~i~~~g~~~~~~~ 362 (382)
++|++ |++++.|+++++..
T Consensus 473 -----------------~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 473 -----------------MVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp -----------------EEEEEETTTEEEECCCEEHHH
T ss_pred -----------------EEEeCCcceEeecCCHHHHHh
Confidence 88886 78888898887653
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.3e-44 Score=379.58 Aligned_cols=207 Identities=29% Similarity=0.378 Sum_probs=181.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+.++++++|++++|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .
T Consensus 354 ~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---------------~ 417 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------------L 417 (607)
T ss_dssp CCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC---------------C
T ss_pred CceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe---------------e
Confidence 45789999999999864 7999999999999999999999999999999999999999999861 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|||+||++.+++.+||.||+....... . ...+++.++++.+|+.+..++++.+|||||||||+|||||++
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~---- 488 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK--L---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR---- 488 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH--H---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTS----
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC--C---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 5999999998777799999987641111 0 113457889999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|+||||||||+|||+.++..+.++|+++.++ | .|+|+||||++++..+|||+
T Consensus 489 ---~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~adrv------------- 542 (607)
T 3bk7_A 489 ---DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE----------KTALVVEHDVLMIDYVSDRL------------- 542 (607)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEE-------------
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999754 5 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeC--CeEEEEeccccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYE--GKIVWQGMTHEFTS 362 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~--G~i~~~g~~~~~~~ 362 (382)
++|++ |++++.|+++++.+
T Consensus 543 -----------------~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 543 -----------------IVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp -----------------EEEEEETTTEEEECCCEEHHH
T ss_pred -----------------EEEcCCcceEEecCCHHHHHh
Confidence 88876 88888898887653
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.5e-44 Score=371.73 Aligned_cols=191 Identities=22% Similarity=0.310 Sum_probs=167.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..++++++|+++.|++ ..|+.+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 266 ~~~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 330 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-------------- 330 (538)
T ss_dssp CCEEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC--------------
T ss_pred ccceEEEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe--------------
Confidence 4568999999999987 4688899999999999999999999999999999999999999997642
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
.|+|++|+......+||.+|+.+..... ... ..+.++++++.+++.+..++++.+|||||||||+|||||++
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~---- 402 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDA--LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAK---- 402 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSST--TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHS----
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhc--cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 4899999987666789999998742111 111 12346788999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|+||||||||+|||+.++.+++++|++++++.+ .|||+||||++++..+||||
T Consensus 403 ---~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g---------~tvi~vsHdl~~~~~~aDri 456 (538)
T 3ozx_A 403 ---EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK---------AVTFIIDHDLSIHDYIADRI 456 (538)
T ss_dssp ---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT---------CEEEEECSCHHHHHHHCSEE
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC---------CEEEEEeCCHHHHHHhCCEE
Confidence 6999999999999999999999999999986521 59999999999999999988
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-42 Score=365.83 Aligned_cols=213 Identities=22% Similarity=0.306 Sum_probs=179.0
Q ss_pred EeEEEEeCC-eeeeEeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 95 RNVYKSFGE-KHILRGVSFKIRHG-----EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 95 ~nvs~~yg~-~~iL~~vsl~i~~G-----e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++++++|++ ..+++++||++.+| |++||+||||||||||+|+|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~---------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP---------KLN 414 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC---------SCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc---------CCc
Confidence 667888976 46899999999999 7899999999999999999999999999962 11 225
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
++|+||+...+...||++|+..... ..... .+.+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~--~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~----- 484 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIR--GQFLN---PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI----- 484 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCS--STTTS---HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTS-----
T ss_pred EEEecccccccCCccHHHHHHHHhh--ccccc---HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh-----
Confidence 9999999776555799999864321 11111 2346788999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|+||||||||+|||+.++..+.++|+++.+ .| .|+|+||||++++..+||||
T Consensus 485 --~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g----------~tviivtHdl~~~~~~aDrv-------------- 538 (608)
T 3j16_B 485 --PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK----------KTAFIVEHDFIMATYLADKV-------------- 538 (608)
T ss_dssp --CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEE--------------
T ss_pred --CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 6999999999999999999999999999964 45 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeC--CeEEEEecccccccCCCHHHHHHHcC
Q 016804 328 LGAVAPDKEVFFIYRLIFLYE--GKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~--G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++|++ |+++..|+|.++.+..+..+..+...
T Consensus 539 ----------------ivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~~~ 571 (608)
T 3j16_B 539 ----------------IVFEGIPSKNAHARAPESLLTGCNRFLKNLNVT 571 (608)
T ss_dssp ----------------EECEEETTTEEECCCCEEHHHHHHHHHHHHTCC
T ss_pred ----------------EEEeCCCCeEEecCChHHHhhhhhHHHHhcCce
Confidence 88886 89999999999876555666666533
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.2e-43 Score=364.21 Aligned_cols=196 Identities=27% Similarity=0.371 Sum_probs=158.8
Q ss_pred EEE-EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE---------EECCEECCCCCC
Q 016804 92 IDC-RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV---------YIRGRKRAGLIS 160 (382)
Q Consensus 92 I~~-~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I---------~i~G~~i~~~~~ 160 (382)
.++ +||+|+|+++ .+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 6999999876 4999999 999999999999999999999999999999999995 345543211000
Q ss_pred hhhhccceEEEEecCCCCCCC---CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHH
Q 016804 161 DEEISGLRIGLVFQSAALFDS---LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~---lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaI 237 (382)
.....+.++++++|...+++. .|+.+|+... . . .+++.++++.+|+.+..++++.+|||||||||+|
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~-~-----~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----D-E-----TGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----C-S-----SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----h-H-----HHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence 001112358999998654332 3899988531 0 1 1336788999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
||||+. +|+||||||||++||+.++..+.+.|+++.++| .|||+||||++++..+||||++
T Consensus 170 AraL~~-------~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g----------~tvi~vsHd~~~~~~~~dri~v 230 (538)
T 1yqt_A 170 AAALLR-------NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG----------KSVLVVEHDLAVLDYLSDIIHV 230 (538)
T ss_dssp HHHHHS-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEE
Confidence 999997 699999999999999999999999999998766 5999999999999999999833
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9.7e-43 Score=368.34 Aligned_cols=195 Identities=28% Similarity=0.409 Sum_probs=161.1
Q ss_pred eEEE--------EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE---------EECC
Q 016804 91 LIDC--------RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV---------YIRG 152 (382)
Q Consensus 91 ~I~~--------~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I---------~i~G 152 (382)
+|++ +||+++|+++ .+|+++| +|++||++||+||||||||||||+|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4888 9999999876 4999999 999999999999999999999999999999999996 3455
Q ss_pred EECCCCCChhhhccceEEEEecCCCCCC---CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCCh
Q 016804 153 RKRAGLISDEEISGLRIGLVFQSAALFD---SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229 (382)
Q Consensus 153 ~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~---~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSG 229 (382)
.++..........+.++++++|...+++ ..||.||+... .. .+++.++++.+||++..++++.+|||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSG 231 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-----DE-----VGKFEEVVKELELENVLDRELHQLSG 231 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-----HH-----HHHHHHHHHHcCCCchhCCChhhCCH
Confidence 4321100000112235889999754322 13999998641 11 13367789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
||||||+|||||+. +|+||||||||++||+.++..+.++|+++.++| .|||+||||++++..+
T Consensus 232 GekQRvaIAraL~~-------~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g----------~tvIivsHdl~~~~~~ 294 (607)
T 3bk7_A 232 GELQRVAIAAALLR-------KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG----------KAVLVVEHDLAVLDYL 294 (607)
T ss_dssp HHHHHHHHHHHHHS-------CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEecChHHHHhh
Confidence 99999999999997 699999999999999999999999999998766 5999999999999999
Q ss_pred hchh
Q 016804 310 VDRL 313 (382)
Q Consensus 310 aDrv 313 (382)
||||
T Consensus 295 adri 298 (607)
T 3bk7_A 295 SDVI 298 (607)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 9988
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.9e-41 Score=359.89 Aligned_cols=217 Identities=26% Similarity=0.388 Sum_probs=146.9
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHHcCCCCC-------ccEEEECCEE
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL---------------------KIIAGLLAPD-------KGEVYIRGRK 154 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLL---------------------klI~Gl~~p~-------sG~I~i~G~~ 154 (382)
..++|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45799999999999999999999999999998 9999999999 5566666654
Q ss_pred CCCCCChhhhccceEEEEecCC-------------------CCCCCCCHHHHHHhhHhhc-CCCCHH-------HHHHHH
Q 016804 155 RAGLISDEEISGLRIGLVFQSA-------------------ALFDSLTVRENVGFLLYEN-SKMRDE-------QISELV 207 (382)
Q Consensus 155 i~~~~~~~~~~~~~Ig~V~Q~~-------------------~l~~~lTV~eni~~~~~~~-~~~~~~-------~~~~~v 207 (382)
.... .+..+|+|+|.+ ..++.+||+||+.+..... ...... +..++
T Consensus 110 ~~~~------~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (670)
T 3ux8_A 110 TSRN------PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR- 182 (670)
T ss_dssp -----------CCBHHHHTTCC-------------------------CC--------------------------CHHH-
T ss_pred hhcc------chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-
Confidence 3211 111244444432 2356789999998742111 000000 11111
Q ss_pred HHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 016804 208 KENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284 (382)
Q Consensus 208 ~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~--iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~ 284 (382)
.++++.+||.+. .++++.+|||||||||+|||||+. +|+ ||||||||+|||+..+..++++|++++++|
T Consensus 183 ~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~-------~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g- 254 (670)
T 3ux8_A 183 LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS-------RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG- 254 (670)
T ss_dssp HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHT-------CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTT-
T ss_pred HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhh-------CCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcC-
Confidence 245889999864 689999999999999999999997 477 999999999999999999999999998776
Q ss_pred CCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEeccc
Q 016804 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTH 358 (382)
Q Consensus 285 ~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~ 358 (382)
.|||+||||++.+. .|||+ ++| ++|++++.|+++
T Consensus 255 ---------~tvi~vtHd~~~~~-~~d~i------------------------------i~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 255 ---------NTLIVVEHDEDTML-AADYL------------------------------IDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp ---------CEEEEECCCHHHHH-HCSEE------------------------------EEECSSSGGGCCSEEEEECHH
T ss_pred ---------CEEEEEeCCHHHHh-hCCEE------------------------------EEecccccccCCEEEEecCHH
Confidence 59999999999865 58877 888 899999999998
Q ss_pred ccccCCCHHHHHHHcC
Q 016804 359 EFTSSSNPIVQQFASG 374 (382)
Q Consensus 359 ~~~~~~~~~~~~~~~~ 374 (382)
++..........+..+
T Consensus 295 ~~~~~~~~~~~~~~~~ 310 (670)
T 3ux8_A 295 EVMNDPNSLTGQYLSG 310 (670)
T ss_dssp HHHTCTTCHHHHHHTT
T ss_pred HHhcCchhHHHHHhcc
Confidence 8875544455555554
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.2e-41 Score=368.14 Aligned_cols=206 Identities=22% Similarity=0.373 Sum_probs=164.6
Q ss_pred CcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 88 GDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+.++|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~------------ 735 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN------------ 735 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT------------
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc------------
Confidence 4578999999999975 67999999999999999999999999999999999999999999999862
Q ss_pred cceEEEEecCCCC----CCCCCHHHHHHhhHhhc----------------------------------------------
Q 016804 166 GLRIGLVFQSAAL----FDSLTVRENVGFLLYEN---------------------------------------------- 195 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l----~~~lTV~eni~~~~~~~---------------------------------------------- 195 (382)
.+|||++|++.. ....|+.+++.+.....
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 136777776421 11246666654321000
Q ss_pred ------------------------------------------------------CCCCHHHHHHHHHHHHHHcCCcc-c-
Q 016804 196 ------------------------------------------------------SKMRDEQISELVKENLAAVGLKG-V- 219 (382)
Q Consensus 196 ------------------------------------------------------~~~~~~~~~~~v~~~L~~~gL~~-~- 219 (382)
.+.......++++++++.+||.. .
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 00000011356788999999975 4
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
.++++.+|||||||||+|||||+. +|+||||||||+|||+.+...+.+.|+++ + .|||+|
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~-------~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g----------~tVIiI 954 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQ-------RPHLIVLDEPTNYLDRDSLGALSKALKEF---E----------GGVIII 954 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTT-------CCSEEEEECGGGTCCHHHHHHHHHHHHSC---S----------SEEEEE
T ss_pred cCCCccccCHHHHHHHHHHHHHHh-------CCCEEEEECCccCCCHHHHHHHHHHHHHh---C----------CEEEEE
Confidence 688999999999999999999997 69999999999999999999998888765 3 399999
Q ss_pred ccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 300 THQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 300 THdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
|||++++.++|||+ ++|++|++++.|+
T Consensus 955 SHD~e~v~~l~DrV------------------------------ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 955 THSAEFTKNLTEEV------------------------------WAVKDGRMTPSGH 981 (986)
T ss_dssp CSCHHHHTTTCCEE------------------------------ECCBTTBCCC---
T ss_pred ECCHHHHHHhCCEE------------------------------EEEECCEEEEeCC
Confidence 99999999999988 8999999988773
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.6e-39 Score=357.40 Aligned_cols=197 Identities=26% Similarity=0.386 Sum_probs=168.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
.|...|++++|+++.+|+|+||+|++||+++|+||||||||||||+|+| |+| +|.+.. . ..+++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~-----~---~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ-----E---ECRTV 498 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT-----T---TSCEE
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc-----c---ceeEE
Confidence 4777799999999999999999999999999999999999999999996 554 453321 1 12478
Q ss_pred EEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 171 LVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 171 ~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|++|++ .+++.+||.||+.+. ..+. .+++.++++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~---~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~----- 565 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFES---GVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLR----- 565 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTT---CSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHT-----
T ss_pred EEcccccccccCCcHHHHHHHh---hcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999985 678889999999761 1111 45678899999995 68899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|+||||||||++||+.++..+.++|++ .| .|+|+||||++++.++|||+
T Consensus 566 --~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g----------~tvIivSHdl~~l~~~adri--------------- 615 (986)
T 2iw3_A 566 --NADILLLDEPTNHLDTVNVAWLVNYLNT---CG----------ITSITISHDSVFLDNVCEYI--------------- 615 (986)
T ss_dssp --TCSEEEEESTTTTCCHHHHHHHHHHHHH---SC----------SEEEEECSCHHHHHHHCSEE---------------
T ss_pred --CCCEEEEECCccCCCHHHHHHHHHHHHh---CC----------CEEEEEECCHHHHHHhCCEE---------------
Confidence 6999999999999999999999999988 34 49999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
++|++|+++ +.|+++++.
T Consensus 616 ---------------i~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 616 ---------------INYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp ---------------EEEETTEEEEEESCHHHHH
T ss_pred ---------------EEEECCeeecCCCCHHHHH
Confidence 999999997 678777764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.5e-39 Score=340.87 Aligned_cols=216 Identities=25% Similarity=0.330 Sum_probs=160.1
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------------cCCCCCccEEEECCEECCCCCCh
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA----------------------GLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~----------------------Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
..+|+||||+|++||++||+||||||||||+++|+ |+..+ +|.|.+++.++......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998764 44443 46888988776432110
Q ss_pred hhh---------------------------------------ccceEEEEecCCCCCC----------------------
Q 016804 162 EEI---------------------------------------SGLRIGLVFQSAALFD---------------------- 180 (382)
Q Consensus 162 ~~~---------------------------------------~~~~Ig~V~Q~~~l~~---------------------- 180 (382)
... .....|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 000 0001244444433322
Q ss_pred ----------CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 181 ----------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 181 ----------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
.+||.||+.+... . . . .++..+.++.+++.. ..++++.+|||||||||+|||||++++
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~----~-~-~-~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p---- 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS----I-P-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRS---- 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT----C-H-H-HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC----
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH----h-h-h-HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCC----
Confidence 4799999987431 1 1 1 234567889999964 568999999999999999999999741
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
.+|+||||||||+|||+.++..++++|++++++| .|||+||||++.+. .||||
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g----------~tvi~vtHd~~~~~-~~d~i---------------- 615 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG----------DTVLVIEHNLDVIK-TADYI---------------- 615 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHT-TCSEE----------------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHH-hCCEE----------------
Confidence 1357999999999999999999999999998776 59999999999874 68877
Q ss_pred cCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHH
Q 016804 330 AVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++| ++|+|+++|+++++......+...|+
T Consensus 616 --------------~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~~~~~~ 650 (670)
T 3ux8_A 616 --------------IDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 650 (670)
T ss_dssp --------------EEEESSSGGGCCEEEEEECHHHHHTCTTCHHHHHH
T ss_pred --------------EEecCCcCCCCCEEEEecCHHHHHhCCccHHHHHH
Confidence 999 89999999999988655445555444
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=336.18 Aligned_cols=193 Identities=26% Similarity=0.357 Sum_probs=146.6
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEECCCCCChhh
Q 016804 96 NVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDEE 163 (382)
Q Consensus 96 nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~-----------i~G~~i~~~~~~~~ 163 (382)
|++++|+.. ..|++++ .+++||++||+||||||||||||+|+|+++|++|+|. +.|.++........
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 578999754 4677777 5899999999999999999999999999999999982 33322110000000
Q ss_pred hccceEEEEecCCCCC------CCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALF------DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~------~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaI 237 (382)
.......+.+|....+ +..++.+++... ... ..+++.++++.+||.+..++++.+|||||||||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR----MEK----SPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH----CCS----CHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh----hhh----HHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 0111123334432111 123555555431 111 13457889999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
||||+. +|++|||||||++||+.++..+.++|+++.++| .|||+||||++++..+||||+
T Consensus 233 AraL~~-------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHdl~~~~~~~drv~ 292 (608)
T 3j16_B 233 GMSCVQ-------EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT----------KYVICVEHDLSVLDYLSDFVC 292 (608)
T ss_dssp HHHHHS-------CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTT----------CEEEEECSCHHHHHHHCSEEE
T ss_pred HHHHHh-------CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEE
Confidence 999997 699999999999999999999999999998776 599999999999999999883
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.5e-38 Score=329.34 Aligned_cols=191 Identities=24% Similarity=0.345 Sum_probs=147.8
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-----------EECCEECCCCCChh
Q 016804 95 RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----------YIRGRKRAGLISDE 162 (382)
Q Consensus 95 ~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I-----------~i~G~~i~~~~~~~ 162 (382)
++++.+||.. .-|.++.. +++||++||+||||||||||+|+|+|+++|++|+| .++|+++.......
T Consensus 3 ~~~~~~~~~~~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 3 GEVIHRYKVNGFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CCEEEESSTTSCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCceecCCCceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 4578899743 34444443 56999999999999999999999999999999998 56776542110000
Q ss_pred hhccceEEEEecCC----CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSA----ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~----~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA 238 (382)
......+...+|.. .++. .++.+++... . . .++++++++.+|+....++++.+|||||||||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~----~-~-----~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA 150 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLK-GTVNEILTKI----D-E-----RGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVA 150 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH----C-C-----SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred hhcccchhhccchhhhhhhhcc-CcHHHHhhcc----h-h-----HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 01112355555543 3343 4888876431 1 1 12356789999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
|||+. +|+||||||||++||+.++..+.++|+++.+ | .|||+||||++++..+||||++
T Consensus 151 ~aL~~-------~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g----------~tii~vsHdl~~~~~~~d~i~v 209 (538)
T 3ozx_A 151 ASLLR-------EADVYIFDQPSSYLDVRERMNMAKAIRELLK-N----------KYVIVVDHDLIVLDYLTDLIHI 209 (538)
T ss_dssp HHHHS-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-T----------SEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHHc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHhC-C----------CEEEEEEeChHHHHhhCCEEEE
Confidence 99997 6999999999999999999999999999965 5 5999999999999999998833
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-35 Score=325.24 Aligned_cols=227 Identities=22% Similarity=0.319 Sum_probs=171.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHHcCCCCC------cc------EEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL---------KIIAGLLAPD------KG------EVY 149 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLL---------klI~Gl~~p~------sG------~I~ 149 (382)
.+++++++ ...|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.
T Consensus 589 ~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~ 663 (916)
T 3pih_A 589 SLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIA 663 (916)
T ss_dssp EEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEE
T ss_pred eEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEe
Confidence 35555553 4579999999999999999999999999997 4555544433 23 344
Q ss_pred ECCEECCCCCCh--h-------------------h------------------hccceEEEEecCCCCCC----------
Q 016804 150 IRGRKRAGLISD--E-------------------E------------------ISGLRIGLVFQSAALFD---------- 180 (382)
Q Consensus 150 i~G~~i~~~~~~--~-------------------~------------------~~~~~Ig~V~Q~~~l~~---------- 180 (382)
++..++...... . . ......|+++|+..+++
T Consensus 664 idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~ 743 (916)
T 3pih_A 664 IDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCK 743 (916)
T ss_dssp ECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTT
T ss_pred eccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccccc
Confidence 544433211000 0 0 00012578888776654
Q ss_pred ----------------------CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHH
Q 016804 181 ----------------------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 181 ----------------------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaI 237 (382)
.+||.|++.|... . ....++.++|+.+||.. ..++++.+|||||||||+|
T Consensus 744 g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~----~---~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~L 816 (916)
T 3pih_A 744 GKRYNRETLEITYKGKNISDILDMTVDEALEFFKN----I---PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKL 816 (916)
T ss_dssp TSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT----C---HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHH
T ss_pred ccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc----c---hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHH
Confidence 3678888876321 1 12345678999999975 4688999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+++ ..+|+||||||||+|||+..+..++++|+++.++| .|||+||||++.+.. ||||
T Consensus 817 AraL~~~----p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G----------~TVIvI~HdL~~i~~-ADrI---- 877 (916)
T 3pih_A 817 ASELRKR----DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG----------NTVIVIEHNLDVIKN-ADHI---- 877 (916)
T ss_dssp HHHHTSC----CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHTT-CSEE----
T ss_pred HHHHhhC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHh-CCEE----
Confidence 9999974 12468999999999999999999999999998876 599999999998865 8877
Q ss_pred ccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++| ++|+|+++|+++++....+.++..|+..
T Consensus 878 --------------------------ivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l~~ 914 (916)
T 3pih_A 878 --------------------------IDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLKN 914 (916)
T ss_dssp --------------------------EEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHHHTT
T ss_pred --------------------------EEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHHHHh
Confidence 999 8999999999999887667888888764
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.2e-35 Score=323.25 Aligned_cols=231 Identities=20% Similarity=0.296 Sum_probs=167.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHH-HHcCC-------CC-----------------
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI-IAGLL-------AP----------------- 143 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLkl-I~Gl~-------~p----------------- 143 (382)
...|+++|+++ ..|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 46799999985 37999999999999999999999999999996 77553 23
Q ss_pred -Ccc-------EEEECCEECCCCCCh---------hhhc---------c---------------------ceEEEEecCC
Q 016804 144 -DKG-------EVYIRGRKRAGLISD---------EEIS---------G---------------------LRIGLVFQSA 176 (382)
Q Consensus 144 -~sG-------~I~i~G~~i~~~~~~---------~~~~---------~---------------------~~Ig~V~Q~~ 176 (382)
.+| .|.++|.++...... ...+ + ...|++..+.
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 467 688888776432110 0000 0 0112222121
Q ss_pred CCC------------------------CCCCHHHHHHhhHhh----cCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCC
Q 016804 177 ALF------------------------DSLTVRENVGFLLYE----NSKMRDEQISELVKENLAAVGLKG-VEDRLPSEL 227 (382)
Q Consensus 177 ~l~------------------------~~lTV~eni~~~~~~----~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~L 227 (382)
.++ ...++.||+.+.... .. .... .+++.++|+.+||.. ..++++.+|
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~--~~~~-~~~~~~~L~~~gL~~~~l~~~~~~L 731 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA--DESA-IFRALDTLREVGLGYLRLGQPATEL 731 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT--TSHH-HHHHHHHHHHTTCTTSBTTCCGGGC
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh--cchH-HHHHHHHHHHcCCCcccccCCcccC
Confidence 222 224555554322110 11 1112 246788999999987 468999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 228 SGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
||||||||+|||+|++++ .+|+||||||||+|||+..+..++++|+++.++| .|||+||||++++
T Consensus 732 SGGekQRv~LAraL~~~p----~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G----------~tVIvisHdl~~i- 796 (842)
T 2vf7_A 732 SGGEAQRIKLATELRRSG----RGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG----------NTVIAVEHKMQVV- 796 (842)
T ss_dssp CHHHHHHHHHHHTTSSCC----SSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHH-
T ss_pred CHHHHHHHHHHHHHHhCC----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHH-
Confidence 999999999999999630 0379999999999999999999999999998876 5999999999999
Q ss_pred HhhchhccccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHH
Q 016804 308 RAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 308 ~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
..|||| ++| ++|+|++.|+++++......++..|+
T Consensus 797 ~~aDri------------------------------i~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l 837 (842)
T 2vf7_A 797 AASDWV------------------------------LDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYL 837 (842)
T ss_dssp TTCSEE------------------------------EEECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHH
T ss_pred HhCCEE------------------------------EEECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHH
Confidence 678877 999 79999999999888654333444443
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=334.68 Aligned_cols=212 Identities=14% Similarity=0.121 Sum_probs=170.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-E-EEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-E-VYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG-~-I~i~G~~i~~~~~~~~~~~ 166 (382)
.++++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. . +
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-~----------~ 178 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-P----------Q 178 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-T----------T
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-c----------c
Confidence 46799999999996 79999999999999999999999999999999999999 9 999982 1 2
Q ss_pred ceEEEEecCCCC---CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHH--H
Q 016804 167 LRIGLVFQSAAL---FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS--I 241 (382)
Q Consensus 167 ~~Ig~V~Q~~~l---~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArA--L 241 (382)
..++|+||+..+ ++.+|++||+ |+.....+... .+++.++++.+|+.+..+ +.+|||||||||+|||| |
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL 252 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATL---LHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRL 252 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcch---HHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHh
Confidence 258999999854 4457999999 75432111111 223456788899988766 89999999999999999 9
Q ss_pred hcCCCCCCCCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH------HHHHhh
Q 016804 242 IFDNTKESVEPEV----LLYDE-PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS------TIRRAV 310 (382)
Q Consensus 242 ~~~~~~~a~~P~i----LLLDE-PtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~------~~~~~a 310 (382)
+. +|++ ||||| ||++||+. +..+.++++++ + .|+|+||||++ ++.++|
T Consensus 253 ~~-------~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~----------~tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 253 HL-------DPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---N----------VNIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp HH-------CHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---T----------CCEEEEECCSSCTHHHHHHHHHH
T ss_pred cc-------CcccCcceEEEeCCcccccChh-HHHHHHHHHHh---C----------CCEEEEEccCchhhhHHHHHHhc
Confidence 97 5999 99999 99999999 55555555443 3 48999999987 888999
Q ss_pred ch-----hccccccccchheehhccCCCCcccccccEEEEEe-CCeEEEEecccccccCCCHHHHHHHcCC
Q 016804 311 DR-----LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLY-EGKIVWQGMTHEFTSSSNPIVQQFASGS 375 (382)
Q Consensus 311 Dr-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 375 (382)
|| | ++|+ +|+|+ .|++.++....+..+.+|+.|.
T Consensus 312 dr~~~~~v------------------------------i~l~k~G~iv-~g~~~~~~~~~~~~i~~~f~g~ 351 (460)
T 2npi_A 312 PELGNNNI------------------------------FFIPKLDGVS-AVDDVYKRSLQRTSIREYFYGS 351 (460)
T ss_dssp HHHCGGGE------------------------------EEECCCTTCC-CCCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCEE------------------------------EEEeCCCcEE-ECCHHHHhhhhHHHHHHHhCCC
Confidence 98 6 9999 99999 8877766444456677776553
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.7e-35 Score=322.46 Aligned_cols=227 Identities=25% Similarity=0.328 Sum_probs=169.3
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC-------CCCcc-------------E
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLL-------APDKG-------------E 147 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~-Gl~-------~p~sG-------------~ 147 (382)
.+.|+++|+++ ..|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .
T Consensus 627 ~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 627 GRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp SCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred ceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 36799999963 4799999999999999999999999999999864 221 12233 4
Q ss_pred EEECCEECCCCCC--hh-------hh--------ccceEEEEecCCCCC-------------------------------
Q 016804 148 VYIRGRKRAGLIS--DE-------EI--------SGLRIGLVFQSAALF------------------------------- 179 (382)
Q Consensus 148 I~i~G~~i~~~~~--~~-------~~--------~~~~Ig~V~Q~~~l~------------------------------- 179 (382)
|.+++.++..... .. .. ..+.+||++|.+.+.
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 7888877642111 00 00 011257777754321
Q ss_pred ---------------C--------CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHH
Q 016804 180 ---------------D--------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRV 235 (382)
Q Consensus 180 ---------------~--------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRV 235 (382)
. .+|+.|++.|.. .. . .. +++.++++.+||.. ..++++.+|||||||||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~----~~-~-~~-~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv 854 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA----SI-P-KI-KRKLETLYDVGLGYMKLGQPATTLSGGEAQRV 854 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC----SC-H-HH-HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh----cc-h-hH-HHHHHHHHHcCCCcccccCchhhCCHHHHHHH
Confidence 0 356777776532 11 1 12 33567899999987 78999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||+|+++ ..+|+||||||||+|||+.++..++++|+++.++| .|||+||||++++ ..||||
T Consensus 855 ~LAraL~~~----p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G----------~TVIvisHdl~~i-~~aDrI-- 917 (972)
T 2r6f_A 855 KLAAELHRR----SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG----------DTVLVIEHNLDVI-KTADYI-- 917 (972)
T ss_dssp HHHHHHSSC----CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHH-TTCSEE--
T ss_pred HHHHHHhcC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHH-HhCCEE--
Confidence 999999963 11369999999999999999999999999998876 5999999999987 478877
Q ss_pred ccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHH
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++| ++|+|++.|+++++......++..|+
T Consensus 918 ----------------------------ivL~p~gG~~~G~Iv~~g~~~el~~~~~~~t~~~l 952 (972)
T 2r6f_A 918 ----------------------------IDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 952 (972)
T ss_dssp ----------------------------EEECSSSTTSCCSEEEEESHHHHHTCTTCHHHHHH
T ss_pred ----------------------------EEEcCCCCCCCCEEEEecCHHHHHhCchhHHHHHH
Confidence 999 78999999999887654334444443
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=8.4e-35 Score=319.36 Aligned_cols=232 Identities=24% Similarity=0.293 Sum_probs=169.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-c----CCC---CCccE-------------
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-G----LLA---PDKGE------------- 147 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~-G----l~~---p~sG~------------- 147 (382)
.+.|+++|+++ .+|+||||+|++||++||+|+||||||||+++|+ | .+. +..|.
T Consensus 645 ~~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 719 (993)
T 2ygr_A 645 RRQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKL 719 (993)
T ss_dssp SSEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEE
T ss_pred CceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceE
Confidence 35799999963 3799999999999999999999999999999853 2 222 23443
Q ss_pred EEECCEECCCCCC--hh-------hh--------ccceEEEEecCCCCC----------------------C--------
Q 016804 148 VYIRGRKRAGLIS--DE-------EI--------SGLRIGLVFQSAALF----------------------D-------- 180 (382)
Q Consensus 148 I~i~G~~i~~~~~--~~-------~~--------~~~~Ig~V~Q~~~l~----------------------~-------- 180 (382)
|.+++.++..... .. .. ..+.+||++|...+. +
T Consensus 720 i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~ 799 (993)
T 2ygr_A 720 VRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEV 799 (993)
T ss_dssp ECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTT
T ss_pred EEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehh
Confidence 4455544321100 00 00 001256777653221 1
Q ss_pred ------------------------CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHH
Q 016804 181 ------------------------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRV 235 (382)
Q Consensus 181 ------------------------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRV 235 (382)
.+|+.|++.|.. .. . . .+++.++|+.+||.. ..++++.+|||||||||
T Consensus 800 c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~----~~-~-~-~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv 872 (993)
T 2ygr_A 800 CQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFE----PI-A-G-VHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRV 872 (993)
T ss_dssp TTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHST----TC-H-H-HHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHH
T ss_pred ccccccchhhhhhhccCCCHHHHhhccHHHHHHHhh----cc-h-H-HHHHHHHHHHcCCCcccccCccccCCHHHHHHH
Confidence 246667766532 11 1 1 233568899999987 78999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||+|+++ ..+|+||||||||+|||+..+..+.++|+++.++| .|||+||||++++ ..||||
T Consensus 873 ~LAraL~~~----p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G----------~TVIvisHdl~~i-~~aDrI-- 935 (993)
T 2ygr_A 873 KLASELQKR----STGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKG----------NTVIVIEHNLDVI-KTSDWI-- 935 (993)
T ss_dssp HHHHHHSSC----CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHH-TTCSEE--
T ss_pred HHHHHHHhC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHH-HhCCEE--
Confidence 999999963 11369999999999999999999999999998776 5999999999997 478877
Q ss_pred ccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHHcCCCC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASGSLE 377 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
++| ++|+|++.|+++++......++..|+...+.
T Consensus 936 ----------------------------ivL~p~gg~~~G~Iv~~G~~~el~~~~~~~t~~~l~~~l~ 975 (993)
T 2ygr_A 936 ----------------------------IDLGPEGGAGGGTVVAQGTPEDVAAVPASYTGKFLAEVVG 975 (993)
T ss_dssp ----------------------------EEEESSSTTSCSEEEEEECHHHHHHCTTCHHHHHHGGGC-
T ss_pred ----------------------------EEECCCcCCCCCEEEEecCHHHHHhCCHHHHHHHHHHHhc
Confidence 999 6899999999988865444566666655443
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=6.3e-33 Score=277.33 Aligned_cols=188 Identities=20% Similarity=0.278 Sum_probs=135.2
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCc
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--------------------------------------PDK 145 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~--------------------------------------p~s 145 (382)
..+++++||++.+| +++|+|||||||||||++|.++.. +++
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 36899999999999 999999999999999999988774 457
Q ss_pred cEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC---------------------CC------
Q 016804 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS---------------------KM------ 198 (382)
Q Consensus 146 G~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~---------------------~~------ 198 (382)
|+++++|+++... ......+..+++++|+..++.. +..++..|.-.... ..
T Consensus 127 ~~i~ing~~~~~~-~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVR-ELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESS 204 (415)
T ss_dssp EEEEETTEEECHH-HHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred eEEEECCEECCHH-HHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8999999986421 1122222238999999877643 55444433110000 00
Q ss_pred --------------------------------CHHHHHHHHHHHHHHcCCccc-----------------------cc--
Q 016804 199 --------------------------------RDEQISELVKENLAAVGLKGV-----------------------ED-- 221 (382)
Q Consensus 199 --------------------------------~~~~~~~~v~~~L~~~gL~~~-----------------------~~-- 221 (382)
......+.+.+.++.+++... ..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 001122334455666665320 11
Q ss_pred -----CCCCC-CChHHHHHHHHHHHHhcCCCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 016804 222 -----RLPSE-LSGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (382)
Q Consensus 222 -----~~~~~-LSGGqrQRVaIArAL~~~~~~~a~~P--~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~ 293 (382)
+.+.. |||||||||+||++|+. +| ++|||||||+|||+..+..+.+.|+++. ++
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~-------~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~---------- 346 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVL-------GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DT---------- 346 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHH-------CCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TT----------
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHh-------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CC----------
Confidence 11222 79999999999999997 58 9999999999999999999999999997 44
Q ss_pred eEEEEEccCHHHHHHhhchh
Q 016804 294 ASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 294 ~tiIivTHdl~~~~~~aDrv 313 (382)
.|||+||||++.+ ..|||+
T Consensus 347 ~~vi~itH~~~~~-~~~d~i 365 (415)
T 4aby_A 347 RQVLVVTHLAQIA-ARAHHH 365 (415)
T ss_dssp SEEEEECSCHHHH-TTCSEE
T ss_pred CEEEEEeCcHHHH-hhcCeE
Confidence 4999999999765 578877
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=4.6e-34 Score=264.38 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=104.2
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 99 ~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
|+|+++.+|+++ ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++.. .... .+.+|||+||++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~--~~~~-~~~~ig~v~q~~-- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR--PAVE-AGEKLGFLPGTL-- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE--CSCC-TTCCCCSSCC----
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC--Cchh-hhcceEEecCCH--
Confidence 356677899986 89999999999999999999999999 999999943 22211 1111 133699999987
Q ss_pred CCCCCHHHHH-HhhH--h-hcCC-CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 179 FDSLTVRENV-GFLL--Y-ENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 179 ~~~lTV~eni-~~~~--~-~~~~-~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
+||+ .+.. . .... .. .+.+.++++. ++ ||||||+|||||+. +|+
T Consensus 76 ------~enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~-------~p~ 124 (208)
T 3b85_A 76 ------NEKIDPYLRPLHDALRDMVE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTL-------NDA 124 (208)
T ss_dssp ----------CTTTHHHHHHHTTTSC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCB-------CSE
T ss_pred ------HHHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhc-------CCC
Confidence 3444 2211 0 0001 11 1234556665 44 99999999999997 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
+|||||||++ ++..+.++|+++ ++| +|+| +|||++++..
T Consensus 125 lllLDEPts~----~~~~l~~~l~~l-~~g----------~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 125 FVILDEAQNT----TPAQMKMFLTRL-GFG----------SKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEECSGGGC----CHHHHHHHHTTB-CTT----------CEEE-EEEC------
T ss_pred EEEEeCCccc----cHHHHHHHHHHh-cCC----------CEEE-EECCHHHHhC
Confidence 9999999999 888999999988 555 5889 9999987764
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=3.2e-29 Score=249.70 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=76.8
Q ss_pred cCCCCCCChHHHHHHHHHHHHh------cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 016804 221 DRLPSELSGGMKKRVALARSII------FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (382)
Q Consensus 221 ~~~~~~LSGGqrQRVaIArAL~------~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~ 294 (382)
++++.+|||||||||+|||||+ . +|++|||||||++||+..+..++++|+++.++| .
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~-------~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g----------~ 336 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASG-------RLDAFFIDEGFSSLDTENKEKIASVLKELERLN----------K 336 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTT-------TCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSS----------S
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccC-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------C
Confidence 5788999999999999999998 4 599999999999999999999999999997766 5
Q ss_pred EEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEE
Q 016804 295 SYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVW 353 (382)
Q Consensus 295 tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~ 353 (382)
|||+||||++. ...|||+ ++|++|++++
T Consensus 337 tvi~itH~~~~-~~~~d~~------------------------------~~l~~G~i~~ 364 (365)
T 3qf7_A 337 VIVFITHDREF-SEAFDRK------------------------------LRITGGVVVN 364 (365)
T ss_dssp EEEEEESCHHH-HTTCSCE------------------------------EEEETTEEC-
T ss_pred EEEEEecchHH-HHhCCEE------------------------------EEEECCEEEe
Confidence 99999999988 5678877 9999999975
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1e-29 Score=248.22 Aligned_cols=197 Identities=24% Similarity=0.292 Sum_probs=122.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC------------------------------
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL------------------------------ 141 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~------------------------------ 141 (382)
|+++| .++|++ +++|++.+| +++|+||||||||||+++|..++
T Consensus 6 L~i~n-fr~~~~-----~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~ 78 (322)
T 1e69_A 6 LYLKG-FKSFGR-----PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSA 78 (322)
T ss_dssp EEEES-BTTBCS-----CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEE
T ss_pred EEEeC-ceeecC-----CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceE
Confidence 56677 345532 578888899 99999999999999999999654
Q ss_pred --------------------CCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCC----
Q 016804 142 --------------------APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK---- 197 (382)
Q Consensus 142 --------------------~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~---- 197 (382)
.+.+|+++++|++... ..-... ...+++.+|+..++...++.+++.........
T Consensus 79 ~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~-~~~~~~-~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~ 156 (322)
T 1e69_A 79 YVELVFEENGEEITVARELKRTGENTYYLNGSPVRL-KDIRDR-FAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSK 156 (322)
T ss_dssp EEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECH-HHHHHH-TTTSSTTTTCCSEEEHHHHHHHHTC-----------
T ss_pred EEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccH-HHHHHH-HHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHH
Confidence 3345788999987521 000111 11255555554443222333333221100000
Q ss_pred --------CCHHHHHH---------------------HHHHHHHHcCC------cccccCCCCCCChHHHHHHHHHHHHh
Q 016804 198 --------MRDEQISE---------------------LVKENLAAVGL------KGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 198 --------~~~~~~~~---------------------~v~~~L~~~gL------~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
...+.+.+ .+.++++. |+ .+..++++.+||||||||++|||||+
T Consensus 157 ~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~ 235 (322)
T 1e69_A 157 HPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFA 235 (322)
T ss_dssp ----------CHHHHHHHHHHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHH
Confidence 00000111 11122322 22 12356678899999999999999996
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
.- ...+|++|||||||++||+..+..+.++|+++. ++ .|+|++||+.+ +..+||++
T Consensus 236 ~~---~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~----------~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 236 LM---EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KH----------TQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp HT---TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TT----------SEEEEECCCTT-GGGGCSEE
T ss_pred Hh---ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CC----------CeEEEEECCHH-HHhhCceE
Confidence 20 001589999999999999999999999999984 34 49999999964 56788977
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.95 E-value=7.2e-30 Score=227.45 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=106.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCC-CCCCCHHHH
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL-FDSLTVREN 187 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l-~~~lTV~en 187 (382)
||||++++||+++|+||||||||||+|++.+ |...+.+ ... .|+++|++.- +...+++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~---------d~~----~g~~~~~~~~~~~~~~~~~~ 61 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISS---------DFC----RGLMSDDENDQTVTGAAFDV 61 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEH---------HHH----HHHHCSSTTCGGGHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEcc---------HHH----HHHhcCcccchhhHHHHHHH
Confidence 6899999999999999999999999999652 2211111 111 2678887631 111122222
Q ss_pred HHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHH
Q 016804 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (382)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~ 267 (382)
+.. ... .....|.....+. ....|||||||++||||++. +|++|+|||||++||+.
T Consensus 62 ~~~---------------~~~-~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~-------~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 62 LHY---------------IVS-KRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHC-------FPVAVVFNLPEKVCQER 117 (171)
T ss_dssp HHH---------------HHH-HHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTC-------EEEEEEECCCHHHHHHH
T ss_pred HHH---------------HHH-HHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCC-------cEEEEEEeCCHHHHHHH
Confidence 211 111 2233455544443 34569999999999999986 69999999999999999
Q ss_pred ----------------HHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 268 ----------------ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 268 ----------------~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
....+.+.|++++++| .|+|++|||++++..+
T Consensus 118 ~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g----------~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 118 NKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG----------FRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT----------CSEEEEECSHHHHHHE
T ss_pred HhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC----------CcEEEEeCCHHHhhhh
Confidence 5589999999998777 5999999999998764
No 70
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.95 E-value=4.7e-32 Score=247.79 Aligned_cols=177 Identities=14% Similarity=0.138 Sum_probs=127.1
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
.++++| .+|++||+++|+||||||||||+|+|+|+++. |.+++.... ..... ..+..++|+||++.+|+.+|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~-~~~~~-~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATT-RAPRP-GEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEES-SCCCT-TCCBTTTBEECCHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccc-cCCcc-cccCCCeeEecCHHHHHHHH
Confidence 457777 69999999999999999999999999999963 444442211 11111 11235899999998888888
Q ss_pred HHHHHHhhHh-----hcCCCCHHHHHHHHHHH------HHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 184 VRENVGFLLY-----ENSKMRDEQISELVKEN------LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 184 V~eni~~~~~-----~~~~~~~~~~~~~v~~~------L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
+.+|+.+... ...+.+.++.++++.+. ++.+|+..+.++++.+|| ||+. +|
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~-------~p 142 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLA-------PP 142 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEE-------CS
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEE-------CC
Confidence 8887643210 11123445556666665 677788778888999999 8876 59
Q ss_pred cEEEEeCCCCCC----CHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 253 EVLLYDEPTAGL----DPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 253 ~iLLLDEPtagL----D~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
++++|||||+++ |+..+.++.++++++.++ + .|+|+||||++++.++||||++|
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g----------~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD----------FDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGG----------SSEEEECSSHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc----------CcEEEECCCHHHHHHHHHHHHHh
Confidence 999999999998 788999999999999754 4 59999999999999999999554
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.95 E-value=3.4e-31 Score=268.52 Aligned_cols=180 Identities=14% Similarity=0.188 Sum_probs=141.8
Q ss_pred eeeeEeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 104 KHILRGVSFKIRHGE--------------------AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge--------------------~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 568999999999999 99999999999999999999999999999999987531
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChH--HHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGG--MKKRVALARSI 241 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGG--qrQRVaIArAL 241 (382)
+ .++++|++ .++.+|+.||+.++. . ...+.++++.+++.+.. ..+. ||+| ||||++||+||
T Consensus 109 --~--~~~v~q~~-~~~~ltv~D~~g~~~---~-------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 109 --M--ERHPYKHP-NIPNVVFWDLPGIGS---T-------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --C--CCEEEECS-SCTTEEEEECCCGGG---S-------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHH
T ss_pred --e--eEEecccc-ccCCeeehHhhcccc---h-------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHH
Confidence 1 27899985 577789999886642 1 12356789999987653 3334 9999 99999999999
Q ss_pred hcCCCC---CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcCCCCCCCCCCceEEEEEccCHHH--HHHhhc
Q 016804 242 IFDNTK---ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH-----KKGENGLANPGNIASYVVVTHQHST--IRRAVD 311 (382)
Q Consensus 242 ~~~~~~---~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~-----~~g~~~~~~~~~~~tiIivTHdl~~--~~~~aD 311 (382)
++.... ...+|++++|||||+|||+..+.++++.|+++. +.|. +. ..+++++||+++. +.++||
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~-----~~-~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI-----AE-PPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC-----SS-CCEEECCTTCTTSTTHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC-----CC-CcEEEEecCcCCccCHHHHHH
Confidence 860000 000499999999999999999999999999985 2220 00 1478999999988 999999
Q ss_pred hh
Q 016804 312 RL 313 (382)
Q Consensus 312 rv 313 (382)
++
T Consensus 246 ~I 247 (413)
T 1tq4_A 246 KL 247 (413)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.94 E-value=2.3e-29 Score=245.25 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=129.4
Q ss_pred EEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC----hhhhccceEEEE
Q 016804 97 VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLV 172 (382)
Q Consensus 97 vs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~----~~~~~~~~Ig~V 172 (382)
+...++....++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+..+.+|+|+
T Consensus 80 l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v 159 (302)
T 3b9q_A 80 VLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV 159 (302)
T ss_dssp HHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEE
Confidence 3334444444567899999999999999999999999999999999999999999987643110 011112359999
Q ss_pred ecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 173 FQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 173 ~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+|++. +++.+|+++|+.++... +.. ..+++.+|+.+..++++.+|| |||++|||||+. +
T Consensus 160 ~q~~~~~~~~~~v~e~l~~~~~~--~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~-------~ 219 (302)
T 3b9q_A 160 VAEGDKAKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG-------A 219 (302)
T ss_dssp CCC--CCCHHHHHHHHHHHHHHT--TCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTT-------C
T ss_pred EecCCccCHHHHHHHHHHHHHHc--CCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhcc-------C
Confidence 99998 88889999999875421 111 135678888888888899999 999999999986 6
Q ss_pred Cc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcc
Q 016804 252 PE--VLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTH 301 (382)
Q Consensus 252 P~--iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTH 301 (382)
|+ +|+|| ||+|||+..+ ++++.+. + .|+|++||
T Consensus 220 P~e~lLvLD-ptsglD~~~~------~~~~~~~~g----------~t~iiiTh 255 (302)
T 3b9q_A 220 PNEILLVLD-GNTGLNMLPQ------AREFNEVVG----------ITGLILTK 255 (302)
T ss_dssp CSEEEEEEE-GGGGGGGHHH------HHHHHHHTC----------CCEEEEEC
T ss_pred CCeeEEEEe-CCCCcCHHHH------HHHHHHhcC----------CCEEEEeC
Confidence 99 99999 9999999865 3456543 4 59999999
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=4.3e-28 Score=218.82 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=104.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (382)
.++|+||||||||||+|+|+|++. |.++|.+....... ..+.++||++|++ ++.+|+ +.. ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~--~~~~~ig~~~~~~------~~~~~~-~~~---~~~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDP--ETKKRTGFRIITT------EGKKKI-FSS---KFF 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC--------CCEEEEEET------TCCEEE-EEE---TTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccc--cccceeEEEeecC------cHHHHH-HHh---hcC
Confidence 589999999999999999999985 55667543211000 1133699999986 222332 110 000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHH-----HhcCCCCCCCCCcEEEEeC--CCCCCCHHHHHH
Q 016804 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS-----IIFDNTKESVEPEVLLYDE--PTAGLDPIASTV 271 (382)
Q Consensus 199 ~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArA-----L~~~~~~~a~~P~iLLLDE--PtagLD~~~~~~ 271 (382)
. -....++++.+||||||||++|||| |+. +|++||||| ||++||+..+..
T Consensus 65 ~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~-------~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 T----------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKD-------RRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp C----------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHC-------TTCEEEECCCSTTGGGCHHHHHH
T ss_pred C----------------ccccccccccCcCHHHHHHHHHHhhcccccccc-------CCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0135678899999999999999996 886 699999999 999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCceEEEEEc---cCHHHHHHhhchh
Q 016804 272 VEDLIRSVHKKGENGLANPGNIASYVVVT---HQHSTIRRAVDRL 313 (382)
Q Consensus 272 l~~lL~~l~~~g~~~~~~~~~~~tiIivT---Hdl~~~~~~aDrv 313 (382)
+.+.+++ .+ .|+|++| ||++++..+|||-
T Consensus 122 l~~~l~~---~~----------~~~i~~~H~~h~~~~~~~i~~r~ 153 (178)
T 1ye8_A 122 VRQIMHD---PN----------VNVVATIPIRDVHPLVKEIRRLP 153 (178)
T ss_dssp HHHHHTC---TT----------SEEEEECCSSCCSHHHHHHHTCT
T ss_pred HHHHHhc---CC----------CeEEEEEccCCCchHHHHHHhcC
Confidence 8888865 23 4788888 5999999999974
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.93 E-value=9.5e-30 Score=259.66 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=152.9
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---ECCCCC---Chh
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR---KRAGLI---SDE 162 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~---~i~~~~---~~~ 162 (382)
++++++++++.|+ +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|++|.|.++|+ ++.... ...
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4588999999997 67899999 999999999999999999999999999999999999999997 332110 001
Q ss_pred hhccceEEEEecC-CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 163 EISGLRIGLVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
...++.|+|++|+ ..+++.+|+.+|+.+....+... .-....+.+ .+..||+|| |||+||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~--------------~~~v~~~ld-~l~~lS~g~-qrvslA--- 269 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR--------------GQHVLLIMD-SLTRYAMAQ-REIALA--- 269 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT--------------TCEEEEEEE-CHHHHHHHH-HHHHHH---
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC--------------CCCHHHHHH-hHHHHHHHH-HHHHHH---
Confidence 1123469999995 55677789999998754221100 001112222 267899999 999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CCCCCCCCCCce-----EEEEEccCHHHHHHhhch
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK---K-GENGLANPGNIA-----SYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~---~-g~~~~~~~~~~~-----tiIivTHdl~~~~~~aDr 312 (382)
+. +|++ |+|||+..+..+.+++.++.+ + | . |++++|||++ ..+||+
T Consensus 270 l~-------~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~G----------siT~~~tVlv~tHdl~--~~iad~ 324 (438)
T 2dpy_A 270 IG-------EPPA------TKGYPPSVFAKLPALVERAGNGIHGGG----------SITAFYTVLTEGDDQQ--DPIADS 324 (438)
T ss_dssp TT-------CCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSC----------EEEEEEEEECSSSCSC--CHHHHH
T ss_pred hC-------CCcc------cccCCHHHHHHHHHHHHHHHhccCCCC----------cccceeEEEEeCCCcc--chhhce
Confidence 44 6888 999999999999999999865 2 2 3 8999999999 678999
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
+ ++|.+|+|+..+++.+.
T Consensus 325 v------------------------------~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 325 A------------------------------RAILDGHIVLSRRLAEA 342 (438)
T ss_dssp H------------------------------HHHSSEEEEECHHHHHT
T ss_pred E------------------------------EEEeCcEEEEeCCHHHc
Confidence 9 77889999998877664
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=4.6e-30 Score=237.62 Aligned_cols=180 Identities=10% Similarity=0.078 Sum_probs=122.2
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC-
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT- 183 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT- 183 (382)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++........ .+..++|+||++.+|+.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREK-EKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSS-CCBTTTBEECCHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcc-cccCCeEEECCHHHHHHhhh
Confidence 4699999999999999999999999999999999999 6 99999 776533211111 1235899999988776443
Q ss_pred HHHHHHhhHh--hcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHH-----HHHHhcCCCCCCCCCcEEE
Q 016804 184 VRENVGFLLY--ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL-----ARSIIFDNTKESVEPEVLL 256 (382)
Q Consensus 184 V~eni~~~~~--~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaI-----ArAL~~~~~~~a~~P~iLL 256 (382)
+.+++.+... ...+.+. +.++++++...+. ..+ .+|||||+||++| ||+|+. .|++++
T Consensus 86 ~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~-------~~~~~~ 150 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIK-------PPSTDV 150 (218)
T ss_dssp TTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEE-------CSCHHH
T ss_pred ccchhhhhhcccccCCCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEe-------CcCHHH
Confidence 1122211100 0111122 2355666654432 222 6899999999999 899996 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc------CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 257 YDEPTAGLDPIASTVVEDLIRSVHKK------GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 257 LDEPtagLD~~~~~~l~~lL~~l~~~------g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||||+++|..+...+.+.|.++.++ .. .+.|+++||++++...++++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~---------~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLN---------FNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSC---------CSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC---------CCEEEECCCHHHHHHHHHHH
Confidence 99999999999999999888877543 11 47899999999999999988
No 76
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.93 E-value=4.7e-31 Score=257.82 Aligned_cols=208 Identities=15% Similarity=0.109 Sum_probs=147.5
Q ss_pred hhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEE
Q 016804 21 SRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKS 100 (382)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~ 100 (382)
.++..++.+. ..+.++....+|+......|+...... . .......+|+++||+|+
T Consensus 56 ~~v~~~~~~~-----~~~~~a~~a~~ri~~~l~~~~~~~~~~-------~-------------~~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 56 KHVKDCATMV-----RHYLRAETQALSMPAYIKARCKLATGE-------G-------------SWKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHSCHHHHHHHHHHHCCSS-------C-------------CTHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccccccCCC-------C-------------cccccCCeEEEEEEEEE
Confidence 4555555555 566677777788887776553211000 0 00001124889999999
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCC
Q 016804 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (382)
Q Consensus 101 yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~ 180 (382)
|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|+
T Consensus 111 y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I--------------------~~~v~q~~~lf~ 166 (305)
T 2v9p_A 111 TF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV--------------------LSFANHKSHFWL 166 (305)
T ss_dssp HH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE--------------------ECGGGTTSGGGG
T ss_pred cC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE--------------------EEEecCcccccc
Confidence 98 77999999999999999999999999999999999999 7887 245788888887
Q ss_pred CCCHHH-HHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeC
Q 016804 181 SLTVRE-NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (382)
Q Consensus 181 ~lTV~e-ni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDE 259 (382)
.|+++ |+.++.. ... .+.+.++.+ |.+..+ +..|||||||| ||||++ +|+|||
T Consensus 167 -~ti~~~ni~~~~~----~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~-------~p~iLl--- 220 (305)
T 2v9p_A 167 -ASLADTRAALVDD----ATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIK-------APPLLV--- 220 (305)
T ss_dssp -GGGTTCSCEEEEE----ECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEEC-------CCCEEE---
T ss_pred -ccHHHHhhccCcc----ccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhC-------CCCEEE---
Confidence 48887 8876421 111 234455554 444444 78999999999 999997 599999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCccccc
Q 016804 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFF 339 (382)
Q Consensus 260 PtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (382)
|++||+.++..+. . . ||+++.+ ..|
T Consensus 221 -Ts~LD~~~~~~i~--------~-----------l-----tH~~~~~-~~a----------------------------- 245 (305)
T 2v9p_A 221 -TSNIDVQAEDRYL--------Y-----------L-----HSRVQTF-RFE----------------------------- 245 (305)
T ss_dssp -EESSCSTTCGGGG--------G-----------G-----TTTEEEE-ECC-----------------------------
T ss_pred -ECCCCHHHHHHHH--------H-----------H-----hCCHHHH-HhC-----------------------------
Confidence 9999999887664 1 1 6776543 244
Q ss_pred ccEEEEEeCCeEEEEeccccc
Q 016804 340 IYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 340 ~~~ii~l~~G~i~~~g~~~~~ 360 (382)
|+| +|++|+|++.|+++++
T Consensus 246 -D~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 246 -QPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp -CCC-CCC---CCCCCCHHHH
T ss_pred -CEE-EEeCCEEEEeCCHHHH
Confidence 466 7889999999977776
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.92 E-value=1.1e-27 Score=238.75 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=126.7
Q ss_pred EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC----hhhhccceEEEEecCCC-CCCCC
Q 016804 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVFQSAA-LFDSL 182 (382)
Q Consensus 108 ~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~----~~~~~~~~Ig~V~Q~~~-l~~~l 182 (382)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.++|.++..... ..+..+.+|+|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 56899999999999999999999999999999999999999999988643110 01111235999999998 88889
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc--EEEEeCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYDEP 260 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~--iLLLDEP 260 (382)
|+++|+.++... ... ..+++.+|+.+..++++.+|| |||++|||||+. +|+ +|+|| |
T Consensus 228 tv~e~l~~~~~~--~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~-------~P~e~lLvLD-p 286 (359)
T 2og2_A 228 VLSKAVKRGKEE--GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG-------APNEILLVLD-G 286 (359)
T ss_dssp HHHHHHHHHHHT--TCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTT-------CCSEEEEEEE-G
T ss_pred hHHHHHHHHHhC--CCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhc-------CCCceEEEEc-C
Confidence 999999876421 111 124677888888888899999 999999999986 699 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcc
Q 016804 261 TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTH 301 (382)
Q Consensus 261 tagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTH 301 (382)
|+|||+..+ ++++.+. + .|+|++||
T Consensus 287 ttglD~~~~------~~~~~~~~g----------~t~iiiTh 312 (359)
T 2og2_A 287 NTGLNMLPQ------AREFNEVVG----------ITGLILTK 312 (359)
T ss_dssp GGGGGGHHH------HHHHHHHTC----------CCEEEEES
T ss_pred CCCCCHHHH------HHHHHHhcC----------CeEEEEec
Confidence 999999865 2455543 4 59999999
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=8.7e-27 Score=229.41 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=110.4
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
+++++| | .++++++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|.+.... .. .+..+++++
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~--~~--~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF--KH--HKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC--SS--CSSEEEEEC
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc--cc--chhEEEEEe
Confidence 334444 4 3489999999999999999999999999999999999999999999998642111 10 122466654
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
| |||+||++|||||.. +|+
T Consensus 224 g------------------------------------------------------gg~~~r~~la~aL~~-------~p~ 242 (330)
T 2pt7_A 224 G------------------------------------------------------GNITSADCLKSCLRM-------RPD 242 (330)
T ss_dssp B------------------------------------------------------TTBCHHHHHHHHTTS-------CCS
T ss_pred C------------------------------------------------------CChhHHHHHHHHhhh-------CCC
Confidence 1 899999999999986 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
+|||||||+ .++.++|+.+...+ .|+|++||+.+ +...|||+++|.
T Consensus 243 ilildE~~~-------~e~~~~l~~~~~g~----------~tvi~t~H~~~-~~~~~dri~~l~ 288 (330)
T 2pt7_A 243 RIILGELRS-------SEAYDFYNVLCSGH----------KGTLTTLHAGS-SEEAFIRLANMS 288 (330)
T ss_dssp EEEECCCCS-------THHHHHHHHHHTTC----------CCEEEEEECSS-HHHHHHHHHHHH
T ss_pred EEEEcCCCh-------HHHHHHHHHHhcCC----------CEEEEEEcccH-HHHHhhhheehh
Confidence 999999998 24567788776432 47999999998 778899997765
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.92 E-value=1.4e-27 Score=228.93 Aligned_cols=148 Identities=21% Similarity=0.241 Sum_probs=97.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (382)
.++|+||||||||||+|+|+|+..|++|+|.++|+++... ..+..++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~-----~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT-----VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC-----CSCCEEEESCC----CCEEEEECCCC--CCSBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc-----eeeeeeEEEeecCCCcCCceEEechhhhhhcccHH
Confidence 4899999999999999999999999999999999876321 12346999999999999999999998865322211
Q ss_pred CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 016804 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (382)
Q Consensus 199 ~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~ 278 (382)
.. +.+.+.++ ..+.++++.+||||||||+++|||++ .++++|||+++||+.. .+++++
T Consensus 79 ~~----~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~----------~lllldep~~gL~~lD----~~~l~~ 136 (270)
T 3sop_A 79 CW----EPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHC----------CLYFISPTGHSLRPLD----LEFMKH 136 (270)
T ss_dssp CS----HHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCE----------EEEEECCCSSSCCHHH----HHHHHH
T ss_pred HH----HHHHHHHH----HHHHhhhHHhcCcccchhhhhheeee----------eeEEEecCCCcCCHHH----HHHHHH
Confidence 11 22333333 45667778899999999999999985 4999999999999987 456666
Q ss_pred HHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 279 VHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 279 l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
+.+. .++|+|.|..+
T Consensus 137 L~~~-----------~~vI~Vi~K~D 151 (270)
T 3sop_A 137 LSKV-----------VNIIPVIAKAD 151 (270)
T ss_dssp HHTT-----------SEEEEEETTGG
T ss_pred HHhc-----------CcEEEEEeccc
Confidence 6554 27777777654
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.91 E-value=7.9e-29 Score=242.42 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=132.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFK-----------------------IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~-----------------------i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~ 147 (382)
.|+++||++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|+.|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 489999999995 677777764 8999999999999999999999999999997553
Q ss_pred EEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCC
Q 016804 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSEL 227 (382)
Q Consensus 148 I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~L 227 (382)
.++++|+|++.+++. |+.||+.+.. ..+.......+.+.+.++.++ .+..+.++.+|
T Consensus 121 -------------------~~v~~v~qd~~~~~~-t~~e~~~~~~--~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~l 177 (312)
T 3aez_A 121 -------------------PRVDLVTTDGFLYPN-AELQRRNLMH--RKGFPESYNRRALMRFVTSVK-SGSDYACAPVY 177 (312)
T ss_dssp -------------------CCEEEEEGGGGBCCH-HHHHHTTCTT--CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEE
T ss_pred -------------------CeEEEEecCccCCcc-cHHHHHHHHH--hcCCChHHHHHHHHHHHHHhC-CCcccCCcccC
Confidence 158999999999987 9999986532 112222222345677888887 55556778899
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH-
Q 016804 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI- 306 (382)
Q Consensus 228 SGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~- 306 (382)
||||+||+++|||++. +|+|||||||++.+|+.. ..+.+.- -..|+|+|+.+..
T Consensus 178 S~G~~qRv~~a~al~~-------~p~ilIlDep~~~~d~~~--------~~l~~~~----------D~~I~V~a~~~~~~ 232 (312)
T 3aez_A 178 SHLHYDIIPGAEQVVR-------HPDILILEGLNVLQTGPT--------LMVSDLF----------DFSLYVDARIEDIE 232 (312)
T ss_dssp ETTTTEEEEEEEEEEC-------SCSEEEEECTTTTCCCSS--------CCGGGGC----------SEEEEEEECHHHHH
T ss_pred ChhhhhhhhhHHHhcc-------CCCEEEECCccccCCcch--------HHHHHhc----------CcEEEEECCHHHHH
Confidence 9999999999999996 599999999999998621 1122221 1468888888664
Q ss_pred HHhhchh
Q 016804 307 RRAVDRL 313 (382)
Q Consensus 307 ~~~aDrv 313 (382)
.++.+|.
T Consensus 233 ~R~i~R~ 239 (312)
T 3aez_A 233 QWYVSRF 239 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4456665
No 81
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.90 E-value=3.6e-25 Score=245.77 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=122.4
Q ss_pred cceEEEEe-----EEEEe-CCeeeeEeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 89 DVLIDCRN-----VYKSF-GEKHILRGVSFKIRH-------GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 89 ~~~I~~~n-----vs~~y-g~~~iL~~vsl~i~~-------Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
.++|+++| |++.| ++..+++|++|++++ |++++|+||||||||||||+| |++.+-
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------- 815 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------- 815 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-----------
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-----------
Confidence 45799999 99999 677899999999987 999999999999999999999 998640
Q ss_pred CCCCChhhhccceEE-EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHH
Q 016804 156 AGLISDEEISGLRIG-LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR 234 (382)
Q Consensus 156 ~~~~~~~~~~~~~Ig-~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQR 234 (382)
. ++| ||||++. .+||.++|.. ++|+.+...+..+++|+++++
T Consensus 816 ---------a--qiG~~Vpq~~~---~l~v~d~I~~----------------------rig~~d~~~~~~stf~~em~~- 858 (1022)
T 2o8b_B 816 ---------A--QMGCYVPAEVC---RLTPIDRVFT----------------------RLGASDRIMSGESTFFVELSE- 858 (1022)
T ss_dssp ---------H--TTTCCEESSEE---EECCCSBEEE----------------------ECC---------CHHHHHHHH-
T ss_pred ---------h--heeEEeccCcC---CCCHHHHHHH----------------------HcCCHHHHhhchhhhHHHHHH-
Confidence 1 355 9999863 3566666521 123333333445678887775
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS-TVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~-~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
+++|++++. +|+++||||||+|+|+... ..++++|+.+.++ | .++|++||+++.+..++|+
T Consensus 859 ~a~al~la~-------~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g----------~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 859 TASILMHAT-------AHSLVLVDELGRGTATFDGTAIANAVVKELAETIK----------CRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp HHHHHHHCC-------TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSC----------CEEEEECCCHHHHHHTSSC
T ss_pred HHHHHHhCC-------CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCC----------CEEEEEeCCHHHHHHhCCc
Confidence 999999986 6999999999999999884 5578999999876 5 5999999999999999999
Q ss_pred hccc
Q 016804 313 LCLF 316 (382)
Q Consensus 313 v~~~ 316 (382)
+.++
T Consensus 922 ~~v~ 925 (1022)
T 2o8b_B 922 VAVR 925 (1022)
T ss_dssp SSEE
T ss_pred ceee
Confidence 8553
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.90 E-value=2.8e-26 Score=227.49 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=142.9
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCC------CChh
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL------ISDE 162 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~------~~~~ 162 (382)
++++++++++.|+ +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++.... ...
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~- 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ- 121 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH-
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh-
Confidence 4688999999998 67899999 99999999999999999999999999999999999999998642110 001
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL 241 (382)
...+..+.+++|.. .+..+.+...... -.+.+.+...+-+- ..-..+.+||+|| |||++|
T Consensus 122 ~~~~~~v~~~~~~~-----~~~~~r~~~~~~~----------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la--- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSD-----RPALERMKAAFTA----------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA--- 182 (347)
T ss_dssp HHHTTEEEEEECTT-----SCHHHHHHHHHHH----------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---
T ss_pred hhhhceEEEEECCC-----CCHHHHHHHHHHH----------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---
Confidence 11123488888753 2333433221100 00111211112110 0114578999999 999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c-CCCCCCCCCCce-----EEEEEccCHHHHHHhhchhc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-K-GENGLANPGNIA-----SYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~-g~~~~~~~~~~~-----tiIivTHdl~~~~~~aDrv~ 314 (382)
+. +|++ |+|||+.....+.++++++.+ + | . ||+++|||++ ..+||++
T Consensus 183 l~-------~p~~------t~Gldp~~~~~l~~ller~~~~~~G----------siT~~~tVl~~thdl~--~~i~d~v- 236 (347)
T 2obl_A 183 SG-------EPDV------RGGFPPSVFSSLPKLLERAGPAPKG----------SITAIYTVLLESDNVN--DPIGDEV- 236 (347)
T ss_dssp TT-------CCCC------BTTBCHHHHHHHHHHHTTCEECSSS----------EEEEEEEEECCSSCCC--CHHHHHH-
T ss_pred cC-------CCCc------ccCCCHHHHHHHHHHHHHHhCCCCC----------CeeeEEEEEEeCCCCC--Chhhhhe-
Confidence 33 5887 999999999999999999864 2 3 5 8999999998 6789999
Q ss_pred cccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 315 LFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|.+|+|+.+++..+.
T Consensus 237 -----------------------------~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 237 -----------------------------RSILDGHIVLTRELAEE 253 (347)
T ss_dssp -----------------------------HHHCSEEEEBCHHHHTT
T ss_pred -----------------------------EEeeCcEEEEeCCHHHc
Confidence 77889999999877764
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.90 E-value=8.5e-24 Score=210.71 Aligned_cols=84 Identities=29% Similarity=0.178 Sum_probs=73.6
Q ss_pred CCC-CCChHHHHHHHHHHHHh---------cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016804 223 LPS-ELSGGMKKRVALARSII---------FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292 (382)
Q Consensus 223 ~~~-~LSGGqrQRVaIArAL~---------~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~ 292 (382)
++. .||||||||++||++|+ . +|+||||||||++||+..+..+.+.|.++. +
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~-------~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-q---------- 322 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFG-------EDPVLLLDDFTAELDPHRRQYLLDLAASVP-Q---------- 322 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHS-------SCCEEEECCGGGCCCHHHHHHHHHHHHHSS-E----------
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccC-------CCCEEEEeCccccCCHHHHHHHHHHHHhcC-c----------
Confidence 445 79999999999999999 5 599999999999999999999999998874 2
Q ss_pred ceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 293 IASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 293 ~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
|+|++||. +. .||++ ++|++|+|++.|+++++
T Consensus 323 --t~i~~th~-~~---~~~~i------------------------------~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 323 --AIVTGTEL-AP---GAALT------------------------------LRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --EEEEESSC-CT---TCSEE------------------------------EEEETTEEEECCCTTTS
T ss_pred --EEEEEEec-cc---cCCEE------------------------------EEEECCEEEecCCHHHH
Confidence 89999994 43 67766 99999999999988776
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.89 E-value=3.1e-27 Score=245.17 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=126.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeE-EEeCCcEEEEEcCCCccHHHHHHH--HHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSF-KIRHGEAVGIIGPSGTGKSTILKI--IAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl-~i~~Ge~vaLiGpNGaGKSTLLkl--I~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
++++.+++.+.+++.++|++||| .|++||+++|+||||||||||+++ ++|+.+|++|.|+++|++.. .......
T Consensus 11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~---~~~~~~~ 87 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP---QDIIKNA 87 (525)
T ss_dssp ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH---HHHHHHH
T ss_pred CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH---HHHHHHH
Confidence 34666777766667889999999 999999999999999999999999 78999999999999997621 1111122
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.++||+||++...+ |+.+ .. . ...+ ...++++.+++.++ .-.++++|-.
T Consensus 88 ~~~g~~~q~~~~~~------~l~~-~~-~--~~~~----~~~~~l~~~~l~~~--------------~~~~~~~LS~--- 136 (525)
T 1tf7_A 88 RSFGWDLAKLVDEG------KLFI-LD-A--SPDP----EGQEVVGGFDLSAL--------------IERINYAIQK--- 136 (525)
T ss_dssp GGGTCCHHHHHHTT------SEEE-EE-C--CCCS----SCCSCCSSHHHHHH--------------HHHHHHHHHH---
T ss_pred HHcCCChHHhhccC------cEEE-Ee-c--Cccc----chhhhhcccCHHHH--------------HHHHHHHHHH---
Confidence 35899999865321 1111 00 0 0000 00112222223333 3344444432
Q ss_pred CCCCCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH---------HHhhch
Q 016804 247 KESVEPEVLLYDEPTA-----GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI---------RRAVDR 312 (382)
Q Consensus 247 ~~a~~P~iLLLDEPta-----gLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~---------~~~aDr 312 (382)
.+|++++|||||+ +||+..+..+.++++++++.| +|+|++||+++++ ..+||+
T Consensus 137 ---g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g----------~tvl~itH~~~~~~~~~~~~i~~~laD~ 203 (525)
T 1tf7_A 137 ---YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIG----------ATTVMTTERIEEYGPIARYGVEEFVSDN 203 (525)
T ss_dssp ---HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEEEECSSSSSCSSTTSCHHHHCSE
T ss_pred ---cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCC----------CEEEEEecCCCCccccccccceeeeeeE
Confidence 1589999999998 469999999999999998876 5999999999984 566999
Q ss_pred hcccc
Q 016804 313 LCLFQ 317 (382)
Q Consensus 313 v~~~~ 317 (382)
|++|+
T Consensus 204 vi~L~ 208 (525)
T 1tf7_A 204 VVILR 208 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 97776
No 85
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=5.1e-24 Score=233.84 Aligned_cols=177 Identities=27% Similarity=0.379 Sum_probs=133.7
Q ss_pred HHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC---C-----HHHH
Q 016804 132 TILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM---R-----DEQI 203 (382)
Q Consensus 132 TLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~---~-----~~~~ 203 (382)
|...|..+.+.|.+|+|+|+|+++.. |..+++.+++.|........ . .++.
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~---------------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~ 441 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE---------------------FTELSISEELEFLKNLNLTEREREIVGELLKEI 441 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH---------------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHH---------------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHH
Confidence 34466677889999999999987521 22356666666532110000 0 1122
Q ss_pred HHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 016804 204 SELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 204 ~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~ 282 (382)
. ...+.|..+||... .++++.+|||||||||+|||||+.+ .+|.+|||||||+|||+.....++++|++|+++
T Consensus 442 ~-~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~-----p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~ 515 (916)
T 3pih_A 442 E-KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSG-----LTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL 515 (916)
T ss_dssp H-HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTT-----CCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT
T ss_pred H-HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhC-----CCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc
Confidence 2 33567888999764 6899999999999999999999973 234499999999999999999999999999877
Q ss_pred CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEec
Q 016804 283 GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGM 356 (382)
Q Consensus 283 g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~ 356 (382)
| .|||+||||++.+.. |||| ++| ++|+|+++|+
T Consensus 516 G----------~TvivVtHd~~~~~~-aD~i------------------------------i~lgpgag~~~G~iv~~G~ 554 (916)
T 3pih_A 516 G----------NTVIVVEHDEEVIRN-ADHI------------------------------IDIGPGGGTNGGRVVFQGT 554 (916)
T ss_dssp T----------CEEEEECCCHHHHHT-CSEE------------------------------EEEESSSGGGCSEEEEEEC
T ss_pred C----------CEEEEEeCCHHHHHh-CCEE------------------------------EEEcCCcccCCCEEEEeec
Confidence 6 599999999998864 8877 999 8999999999
Q ss_pred ccccccC-CCHHHHHHHcCCC
Q 016804 357 THEFTSS-SNPIVQQFASGSL 376 (382)
Q Consensus 357 ~~~~~~~-~~~~~~~~~~~~~ 376 (382)
++++... ....+..+..+..
T Consensus 555 ~~e~~~~~~~~~~~~~l~~~~ 575 (916)
T 3pih_A 555 VDELLKNPDSSLTGEYLSGKR 575 (916)
T ss_dssp HHHHHHSCTTCHHHHHHHSSS
T ss_pred hhhhhcCchhcchhhhhhccc
Confidence 9997643 3356677776643
No 86
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.89 E-value=1.5e-24 Score=207.86 Aligned_cols=180 Identities=16% Similarity=0.154 Sum_probs=123.1
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG-~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
.++|+++++.+++|++++|+||||||||||++.|+|+..|++| .|.+.+.+. ...... .++.+++|+..+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~----~~~~~~-~r~~~~~~~~~~---- 92 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE----SVEETA-EDLIGLHNRVRL---- 92 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS----CHHHHH-HHHHHHHTTCCG----
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC----CHHHHH-HHHHHHHcCCCh----
Confidence 4579999999999999999999999999999999999999988 776654332 222221 134444444322
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHH-HHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM-KKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGq-rQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
++.+++..+. .+.++..+.+.++++..++. ....+.++|.+| +||+. |+++.. +|++||+||||
T Consensus 93 ~~~~~l~~~~-----~~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~-------~p~llilDept 157 (296)
T 1cr0_A 93 RQSDSLKREI-----IENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGL-------GCDVIILDHIS 157 (296)
T ss_dssp GGCHHHHHHH-----HHHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTT-------CCSEEEEEEEC
T ss_pred hhccccccCC-----CCHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhc-------CCCEEEEcCcc
Confidence 2334444321 12233344445554433332 344567899999 67776 888886 69999999999
Q ss_pred C---C---CCH-HHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCH--H--------------------HHHHhhc
Q 016804 262 A---G---LDP-IASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH--S--------------------TIRRAVD 311 (382)
Q Consensus 262 a---g---LD~-~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl--~--------------------~~~~~aD 311 (382)
+ + +|. ....++.+.|++++++ + +|||++||+. + .+.++||
T Consensus 158 ~~~~~~~~~d~~~~~~~i~~~L~~la~~~~----------~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD 227 (296)
T 1cr0_A 158 IVVSASGESDERKMIDNLMTKLKGFAKSTG----------VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 227 (296)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHC----------CEEEEEEECC-----------------CCC---CHHHHCS
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHhC----------CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc
Confidence 9 5 565 6678899999999765 5 6999999995 5 6788999
Q ss_pred hhcccc
Q 016804 312 RLCLFQ 317 (382)
Q Consensus 312 rv~~~~ 317 (382)
+|++|.
T Consensus 228 ~vi~L~ 233 (296)
T 1cr0_A 228 TIIALE 233 (296)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 986664
No 87
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.89 E-value=6.7e-23 Score=201.48 Aligned_cols=79 Identities=27% Similarity=0.342 Sum_probs=68.0
Q ss_pred cccCCCCCCChHHHH------HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016804 219 VEDRLPSELSGGMKK------RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292 (382)
Q Consensus 219 ~~~~~~~~LSGGqrQ------RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~ 292 (382)
..++++.+||||||| |+++|+||+. +|++|||||||++||+..+..+.+.|+++.+++
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~-------~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~--------- 304 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAG-------EISLLILDEPTPYLDEERRRKLITIMERYLKKI--------- 304 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTT-------TTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGS---------
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC---------
Confidence 346788999999999 6677788875 699999999999999999999999999987766
Q ss_pred ceEEEEEccCHHHHHHhhchhcc
Q 016804 293 IASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 293 ~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
.|+|+||||.+ +..+||++++
T Consensus 305 -~~vi~~sH~~~-~~~~~d~~~~ 325 (339)
T 3qkt_A 305 -PQVILVSHDEE-LKDAADHVIR 325 (339)
T ss_dssp -SEEEEEESCGG-GGGGCSEEEE
T ss_pred -CEEEEEEChHH-HHHhCCEEEE
Confidence 49999999965 6678998844
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.88 E-value=3.4e-24 Score=222.33 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=129.8
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+++++++..|++ ..+| +..|++|++++|+||||||||||+++++|+..|+ |+ . .+
T Consensus 257 ~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~-------------vi 313 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------R-------------AI 313 (525)
T ss_dssp CCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------C-------------EE
T ss_pred ccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------C-------------EE
Confidence 4566777665533 1233 4489999999999999999999999999998874 43 0 14
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
.|++|++. .++.++... .+.+. .+ +...|+..+.+++|.+|||||+||+++|+++..
T Consensus 314 ~~~~ee~~----~~l~~~~~~-----~g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~------ 370 (525)
T 1tf7_A 314 LFAYEESR----AQLLRNAYS-----WGMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDF------ 370 (525)
T ss_dssp EEESSSCH----HHHHHHHHT-----TSCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTT------
T ss_pred EEEEeCCH----HHHHHHHHH-----cCCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhh------
Confidence 56677642 133333311 12221 11 335677778889999999999999999999986
Q ss_pred CCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH----------HHHHHhhchhc
Q 016804 250 VEPEVLLYDEPTAGLDPI-----ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH----------STIRRAVDRLC 314 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~-----~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl----------~~~~~~aDrv~ 314 (382)
+|++||+| ||++||+. .+..+.++++.+++.| +|+|++||+. ..+..+||+|+
T Consensus 371 -~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g----------~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 371 -KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEE----------ITGLFTNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp -CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTT----------CEEEEEEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred -CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCC----------CEEEEEECcccccCcccccCcccceeeeEEE
Confidence 69999999 99999999 9999999999998776 5999999999 77888999997
Q ss_pred ccc
Q 016804 315 LFQ 317 (382)
Q Consensus 315 ~~~ 317 (382)
+|+
T Consensus 439 ~L~ 441 (525)
T 1tf7_A 439 LLQ 441 (525)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.88 E-value=2e-24 Score=202.22 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=105.4
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCC
Q 016804 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (382)
Q Consensus 101 yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~ 180 (382)
-|++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ . .+.+++|++|+. +++
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-----------~-~~~~i~~v~~d~-~~~ 71 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-----------Q-RQRKVVILSQDR-FYK 71 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-----------G-GGCSEEEEEGGG-GBC
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-----------c-cCCceEEEeCCc-Ccc
Confidence 45678999999999999999999999999999999999976 555444 0 123699999995 677
Q ss_pred CCCHHHHHHhhHhhcCCCC-HH-HHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe
Q 016804 181 SLTVRENVGFLLYENSKMR-DE-QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~-~~-~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD 258 (382)
.+|+.+|+.+..... ... ++ ...+.+.+.++.+ .+..++++.+||+||+||+++ ++++. +|+++|+|
T Consensus 72 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~-------~~~~lilD 140 (245)
T 2jeo_A 72 VLTAEQKAKALKGQY-NFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVY-------PADVVLFE 140 (245)
T ss_dssp CCCHHHHHHHHTTCC-CTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEEC-------CCSEEEEE
T ss_pred ccCHhHhhhhhccCC-CCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEec-------CCCEEEEe
Confidence 789999987754211 111 11 1122344455543 345567789999999999988 56664 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH-HHHHHhhch
Q 016804 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDR 312 (382)
Q Consensus 259 EPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl-~~~~~~aDr 312 (382)
||....|.. +.++ .+ .+|+++||+. .....++++
T Consensus 141 g~~~~~~~~--------l~~~--~~----------~~i~v~th~~~~~~r~~~r~ 175 (245)
T 2jeo_A 141 GILVFYSQE--------IRDM--FH----------LRLFVDTDSDVRLSRRVLRD 175 (245)
T ss_dssp CTTTTTSHH--------HHTT--CS----------EEEEEECCHHHHHHHHHHHH
T ss_pred CccccccHH--------HHHh--cC----------eEEEEECCHHHHHHHHHHHH
Confidence 999888764 1222 13 5999999974 443445443
No 90
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.87 E-value=2.2e-22 Score=208.36 Aligned_cols=72 Identities=26% Similarity=0.349 Sum_probs=65.4
Q ss_pred CCCCC-ChHHHHHHHHHHHHhcCCCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 223 LPSEL-SGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 223 ~~~~L-SGGqrQRVaIArAL~~~~~~~a~~P--~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
++.+| ||||||||+|||||+. +| ++|||||||+|||+.++..+.++|+++++ + .|||+|
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~-------~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~----------~~vi~i 454 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVL-------GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-T----------RQVLVV 454 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHH-------CCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-H----------SEEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHh-------CCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-C----------CEEEEE
Confidence 45677 9999999999999997 58 99999999999999999999999999987 4 499999
Q ss_pred ccCHHHHHHhhchh
Q 016804 300 THQHSTIRRAVDRL 313 (382)
Q Consensus 300 THdl~~~~~~aDrv 313 (382)
||+++.+. .|||+
T Consensus 455 tH~~~~~~-~~d~~ 467 (517)
T 4ad8_A 455 THLAQIAA-RAHHH 467 (517)
T ss_dssp CCCHHHHH-HSSEE
T ss_pred ecCHHHHH-hCCEE
Confidence 99999776 58877
No 91
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.87 E-value=1.8e-24 Score=199.55 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=110.8
Q ss_pred eEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA--GLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~--Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
++++++++..|..- .+|.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+++++.+.. ........
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA---RDLRREMA 79 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH---HHHHHHHH
T ss_pred ccccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCH---HHHHHHHH
Confidence 35666676655431 23332 69999999999999999999999999 775777888888775421 01111112
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
++||++|+...++.+++.++...... ... .. ........+.++.++...+..-..
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~-------------~~~~~~~~~~~~~~~~~~~~l~~~---- 134 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSVVG----LPS----EE-------------KFVLEDRFNVDNFLRYIYRVVKAI---- 134 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC----------------------------------------CCHHHHHHHHHHHHHHT----
T ss_pred HcCCChHHHhhcCCEEEEEccccccc----ccc----cc-------------ceeccCcccHHHHHHHHHHHHHhh----
Confidence 46777776544444555444322110 000 00 000111233444433333333333
Q ss_pred CCCCCcEEEEeCCCCCCC-----HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH---------HHhh-ch
Q 016804 248 ESVEPEVLLYDEPTAGLD-----PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI---------RRAV-DR 312 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD-----~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~---------~~~a-Dr 312 (382)
+|+++++||||++|| +..+..+.++++.+++.| +|+|++||+++++ ..+| |+
T Consensus 135 ---~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g----------~tii~vtH~~~~~~~~~~~~~i~~~~aD~ 201 (251)
T 2ehv_A 135 ---NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMG----------VTTILTTEAPDPQHGKLSRYGIEEFIARG 201 (251)
T ss_dssp ---TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHC----------CEEEEEECCC----CCSSSSSCGGGGCSE
T ss_pred ---CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCC----------CeEEEEECCCCCCcccccccChhhEeeeE
Confidence 699999999999998 777777999999998877 5999999999998 5777 88
Q ss_pred hcccc
Q 016804 313 LCLFQ 317 (382)
Q Consensus 313 v~~~~ 317 (382)
+++|+
T Consensus 202 vi~l~ 206 (251)
T 2ehv_A 202 VIVLD 206 (251)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 85543
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.86 E-value=1.3e-21 Score=214.61 Aligned_cols=145 Identities=28% Similarity=0.426 Sum_probs=116.5
Q ss_pred CCCHHHHHHhhHhhcCCCCH----------HHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 181 SLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
.+||.|++.|.- .-..+. +++.+++ +.|+.+||..+ +++.+.+|||||||||+||++|..+
T Consensus 451 ~ltV~e~~~f~e--~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~----- 522 (972)
T 2r6f_A 451 AMSVTEALAFFD--GLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSR----- 522 (972)
T ss_dssp TSBHHHHHHHHH--HCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTC-----
T ss_pred hCCHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhC-----
Confidence 589999999943 222333 3455565 46899999864 7999999999999999999999863
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
..|++|||||||++||+...+.+.++|++|++.| .|||+|+||++++. .||||
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G----------~TVIvVeHdl~~i~-~ADrI---------------- 575 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG----------NTLIVVEHDEDTML-AADYL---------------- 575 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT----------CEEEEECCCHHHHH-SCSEE----------------
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHH-hCCEE----------------
Confidence 1259999999999999999999999999998776 49999999999875 68877
Q ss_pred cCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 330 AVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++| ++|+++++|+++++.......+.+++.|
T Consensus 576 --------------i~LgpgaG~~gG~iv~~G~~~e~~~~~~slt~~~l~g 612 (972)
T 2r6f_A 576 --------------IDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSG 612 (972)
T ss_dssp --------------EEECSSSGGGCCSEEEEECTTTTTTCTTCTTHHHHHT
T ss_pred --------------EEeCCCccCCCCEEEEecCHHHHHhhhHHHHHHHhcC
Confidence 899 7999999999999875333334444444
No 93
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=4.8e-22 Score=216.58 Aligned_cols=192 Identities=20% Similarity=0.234 Sum_probs=136.7
Q ss_pred CCCccHHHHHHHHHcC---------CCCCccEEEECCEECCCCCChhhhccceEEEEe---cCCCCCC----CCC-HHHH
Q 016804 125 PSGTGKSTILKIIAGL---------LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF---QSAALFD----SLT-VREN 187 (382)
Q Consensus 125 pNGaGKSTLLklI~Gl---------~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~---Q~~~l~~----~lT-V~en 187 (382)
.+..||+||.+.+... +.|.+|+|.++|+++.... ...... .++++. |++.... .++ -...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~-~~~v~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELS-RLPLAR-VSELLRPYAEEREPGHAERVKNRPEQAI 347 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHH-HSBHHH-HHHHHHHHHTTCSSCSTTSSSSCSSHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHh-hcCHHH-HHHHHHhhhhhhhhcccchhhcchhhHH
Confidence 4667999999988773 4567899999998764310 000000 123333 3221100 000 1112
Q ss_pred HHhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC--cEEEEeCCCCCC
Q 016804 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTAGL 264 (382)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P--~iLLLDEPtagL 264 (382)
+.+.+ .+++.++++ .|+.+||... +++.+.+|||||||||+||++|+. +| .+|||||||++|
T Consensus 348 i~~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~-------~p~~~llILDEPT~~L 412 (842)
T 2vf7_A 348 ALQRM-------AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYS-------NLFGVVYVLDEPSAGL 412 (842)
T ss_dssp HHHHH-------HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTT-------CCCSCEEEEECTTTTC
T ss_pred HHHHH-------HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhh-------CCCCeEEEeeCccccC
Confidence 22211 245566666 6889999865 799999999999999999999986 46 599999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEE
Q 016804 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLI 344 (382)
Q Consensus 265 D~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 344 (382)
|+...+.+.++|++|++.| .|||+|+||++.+ ..|||| +
T Consensus 413 d~~~~~~L~~~l~~L~~~G----------~TVIvVeHdl~~l-~~aD~i------------------------------i 451 (842)
T 2vf7_A 413 HPADTEALLSALENLKRGG----------NSLFVVEHDLDVI-RRADWL------------------------------V 451 (842)
T ss_dssp CGGGHHHHHHHHHHHHTTT----------CEEEEECCCHHHH-TTCSEE------------------------------E
T ss_pred CHHHHHHHHHHHHHHHHcC----------CEEEEEcCCHHHH-HhCCEE------------------------------E
Confidence 9999999999999998776 4999999999866 468877 9
Q ss_pred EE------eCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 345 FL------YEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 345 ~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
+| ++|++++.|+++++.......+..++.+
T Consensus 452 ~lgpgaG~~~G~iv~~g~~~~~~~~~~~~~~~~l~~ 487 (842)
T 2vf7_A 452 DVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLFA 487 (842)
T ss_dssp EECSSSGGGCCSEEEEECGGGGGGCTTCHHHHHHHT
T ss_pred EeCCCcccCCCEEEEecCHHHHHhchHHHHHHHhhh
Confidence 99 7999999999999875433344445444
No 94
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.86 E-value=1.6e-24 Score=210.43 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=88.8
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL-LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl-~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
+||+++|+++.++++++|+| +|+||||||||||+++|+|. ..|++| |.++|.++.. .. ....+++++
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~---t~--~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER---TV--QIEASTVEI 69 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC------------------------------CEEEE
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC---cc--eEeeEEEEe
Confidence 58999999999999999998 99999999999999999998 889999 9888876532 11 112489999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
|...++..+|++|++.++.... ..+.....+.. +.+..++++.++|||||||+.+|||++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~---~~e~~~~l~~~------l~~~~~~~~~~~sgg~rqrv~~ara~~----------- 129 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAIN---CRDCFKTIISY------IDEQFERYLHDESGLNRRHIIDNRVHC----------- 129 (301)
T ss_dssp C---CCEEEEEEEEC--------------CTTHHHH------HHHHHHHHHHHHTSSCCTTCCCCCCCE-----------
T ss_pred cCCCcccCcchhhhhhhhhhcC---cHHHHHHHHHH------HHHHHHHHHHHhCHHhhhhhhhhhhhh-----------
Confidence 9988877889999987754211 00111111111 223456788899999999999888873
Q ss_pred EEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 254 VLLYDEPTAG-LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 254 iLLLDEPtag-LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
++++||||++ ||+... ++++++.++.. .++|+++||+.
T Consensus 130 ll~ldePt~~~Ld~~~~----~~l~~l~~~~~---------iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV----AFMKAIHNKVN---------IVPVIAKADTL 168 (301)
T ss_dssp EEEEECSSSSSCCHHHH----HHHHHHTTTSC---------EEEEECCGGGS
T ss_pred eeeeecCcccCCCHHHH----HHHHHHHhcCC---------EEEEEEeCCCC
Confidence 8999999985 999873 56666654311 68999999974
No 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.85 E-value=1.6e-21 Score=214.47 Aligned_cols=148 Identities=25% Similarity=0.378 Sum_probs=118.2
Q ss_pred CCCCCHHHHHHhhHhhcCCCCH----------HHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 179 FDSLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
|..+||.|++.|.- .-+.+. +++.+++ +.|+.+||..+ +++.+.+|||||||||+||++|..+
T Consensus 466 ~~~ltV~e~l~f~e--nl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~--- 539 (993)
T 2ygr_A 466 VCELSIADCADFLN--ALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSG--- 539 (993)
T ss_dssp SSHHHHHHHHHTTT--TTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC---
T ss_pred HhhCCHHHHHHHHH--hcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhC---
Confidence 45689999999832 223343 3455555 45889999865 7999999999999999999999863
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
..|++|||||||++||+...+.+.++|++|++.| .|||+|+||++++. .||||
T Consensus 540 --~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G----------~TVIvVeHdl~~i~-~ADrI-------------- 592 (993)
T 2ygr_A 540 --LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLG----------NTLIVVEHDEDTIE-HADWI-------------- 592 (993)
T ss_dssp --CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHH-TCSEE--------------
T ss_pred --CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcC----------CEEEEECCCHHHHH-hCCEE--------------
Confidence 1269999999999999999999999999998877 49999999999875 68877
Q ss_pred hccCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHHcCC
Q 016804 328 LGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASGS 375 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 375 (382)
++| ++|+++++|+++++.......+.+++.|.
T Consensus 593 ----------------i~Lgp~aG~~gG~iv~~G~~~e~~~~~~~lt~~~l~g~ 630 (993)
T 2ygr_A 593 ----------------VDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLSGR 630 (993)
T ss_dssp ----------------EEECSSSGGGCCSCCEEECHHHHHHCTTCHHHHHHHTS
T ss_pred ----------------EEecCccccCCCEEEEeeCHHHhhhhhHHHHHHHhccC
Confidence 999 79999999999988754333444555443
No 96
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.85 E-value=3.4e-24 Score=226.63 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=104.1
Q ss_pred ceEEEEeEEEEeCC--eeeeEee----------eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEECC
Q 016804 90 VLIDCRNVYKSFGE--KHILRGV----------SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRA 156 (382)
Q Consensus 90 ~~I~~~nvs~~yg~--~~iL~~v----------sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G~~i~ 156 (382)
+.++++||++.|++ +++|+.+ +|+++. +||+|||||||||||++|+|+..| ++|.|+++|.++.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 35889999999975 3455544 366665 999999999999999999999988 8999999999852
Q ss_pred CCCCh-hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH
Q 016804 157 GLISD-EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 157 ~~~~~-~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV 235 (382)
..... ....+.+|||+||++.+++.+||.+|+.+......... .++ | ++++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~--------------~~~-----------s---~~~i 137 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG--------------MGI-----------S---HELI 137 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS--------------SCC-----------C---SCCE
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc--------------ccc-----------c---hHHH
Confidence 11101 11123369999999999999999999987532110000 011 1 1222
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEP------TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEP------tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~ 306 (382)
.++.+... .|+++|+||| |+|||+..+..+.++++++.++.. ..+++++||+++.+
T Consensus 138 ~l~i~~~~-------~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~--------~iil~vvt~~~d~a 199 (608)
T 3szr_A 138 TLEISSRD-------VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE--------TISLVVVPSNVDIA 199 (608)
T ss_dssp EEEEEESS-------SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS--------CCEEEEEESSSCTT
T ss_pred HHHhcCCC-------CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC--------CCceEEEeccchhc
Confidence 23333332 5999999999 999999999999999999754421 16899999998744
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.85 E-value=6.2e-23 Score=195.74 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=104.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..++
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~------~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF------KHKKS 73 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC------CCSSS
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec------CCcce
Confidence 455666542 5899999 8999999999999999999999999999998 999999986542110 00122
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
+++|. .+|++. ..| |++||+||..
T Consensus 74 ~v~q~-------------------------------------~~gl~~------~~l------~~~la~aL~~------- 97 (261)
T 2eyu_A 74 IVNQR-------------------------------------EVGEDT------KSF------ADALRAALRE------- 97 (261)
T ss_dssp EEEEE-------------------------------------EBTTTB------SCH------HHHHHHHHHH-------
T ss_pred eeeHH-------------------------------------HhCCCH------HHH------HHHHHHHHhh-------
Confidence 33321 233321 122 8999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
+|++||+|||| |+.+... +++.. +.| .+++++||+.+ +..+|||+++|.+
T Consensus 98 ~p~illlDEp~---D~~~~~~---~l~~~-~~g----------~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 98 DPDVIFVGEMR---DLETVET---ALRAA-ETG----------HLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp CCSEEEESCCC---SHHHHHH---HHHHH-HTT----------CEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred CCCEEEeCCCC---CHHHHHH---HHHHH-ccC----------CEEEEEeCcch-HHHHHHHHhhhcC
Confidence 59999999999 9887654 34433 445 49999999988 6788999977764
No 98
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.84 E-value=4.1e-23 Score=201.31 Aligned_cols=154 Identities=18% Similarity=0.153 Sum_probs=110.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh----hhccceEEEEecCCCCCCCCCHHHHHHhh
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE----EISGLRIGLVFQSAALFDSLTVRENVGFL 191 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~----~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~ 191 (382)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....... +..+.+|+|++|++.++|..++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999875432111 11123599999999999989999999875
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHH
Q 016804 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271 (382)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~ 271 (382)
.... .. ..+++..|+.+...+++.+| ++||++|||||+. +|+.++| .||+.+...
T Consensus 181 ~~~~--~d--------~~llDt~G~~~~~~~~~~eL---s~~r~~iaRal~~-------~P~~~lL-----vLDa~t~~~ 235 (304)
T 1rj9_A 181 KARG--YD--------LLFVDTAGRLHTKHNLMEEL---KKVKRAIAKADPE-------EPKEVWL-----VLDAVTGQN 235 (304)
T ss_dssp HHHT--CS--------EEEECCCCCCTTCHHHHHHH---HHHHHHHHHHCTT-------CCSEEEE-----EEETTBCTH
T ss_pred HhCC--CC--------EEEecCCCCCCchHHHHHHH---HHHHHHHHHhhcC-------CCCeEEE-----EEcHHHHHH
Confidence 4211 10 01234455544333444444 4899999999986 6994443 444444455
Q ss_pred HHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHH
Q 016804 272 VEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 272 l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~ 304 (382)
+.+.++++.+. + .|+|++||+..
T Consensus 236 ~~~~~~~~~~~~~----------~t~iivTh~d~ 259 (304)
T 1rj9_A 236 GLEQAKKFHEAVG----------LTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEECTTS
T ss_pred HHHHHHHHHHHcC----------CcEEEEECCcc
Confidence 66677777655 5 59999999854
No 99
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.83 E-value=6e-21 Score=210.12 Aligned_cols=150 Identities=20% Similarity=0.167 Sum_probs=103.5
Q ss_pred ceEEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------HcCCCCCccEEEECCEECC
Q 016804 90 VLIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKII--------AGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 90 ~~I~~~nvs~~y-----g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI--------~Gl~~p~sG~I~i~G~~i~ 156 (382)
..|++++...-+ +++.+++|++|++++|++++|+||||||||||||+| .|..-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 346777765444 235799999999999999999999999999999999 55444432211
Q ss_pred CCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHH
Q 016804 157 GLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 157 ~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
++.+. +++.++|+.+ .....+|+|+++++.
T Consensus 702 ------------~~~~d-----------------------------------~i~~~ig~~d---~l~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ------------VSIVD-----------------------------------CILARVGAGD---SQLKGVSTFMAEMLE 731 (934)
T ss_dssp ------------EECCS-----------------------------------EEEEECC------------CHHHHHHHH
T ss_pred ------------chHHH-----------------------------------HHHHhcCchh---hHHHhHhhhHHHHHH
Confidence 11100 0111122221 223457888888888
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l-~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|.. +.+|+++||||||+|+|+.....+ ..+++.+.++ | .++|++||+++.+ .+||++
T Consensus 732 ~a~il~~-----a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g----------~~vl~aTH~~el~-~lad~~ 794 (934)
T 3thx_A 732 TASILRS-----ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIG----------AFCMFATHFHELT-ALANQI 794 (934)
T ss_dssp HHHHHHH-----CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTC----------CEEEEEESCGGGG-GGGGTC
T ss_pred HHHHHHh-----ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC----------CEEEEEcCcHHHH-HHhccc
Confidence 8888821 137999999999999999988888 7778888764 4 5999999997655 689988
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.83 E-value=1.2e-21 Score=211.82 Aligned_cols=145 Identities=21% Similarity=0.208 Sum_probs=110.3
Q ss_pred eEEEEeEEEEe---CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEECCCCCChhhhcc
Q 016804 91 LIDCRNVYKSF---GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 91 ~I~~~nvs~~y---g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.|++++...-. +++.+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+.- . .+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp----------a---~~ 613 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP----------A---EE 613 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS----------S---SE
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee----------h---hc
Confidence 47788775444 456799999999 99999999999999999999999974 67776420 0 12
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH--hcC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI--IFD 244 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL--~~~ 244 (382)
.++++++| +|+.+++.||+.. .+|+||+|++.+|+++ +.
T Consensus 614 ~~i~~v~~---i~~~~~~~d~l~~-----------------------------------g~S~~~~e~~~la~il~~a~- 654 (765)
T 1ewq_A 614 AHLPLFDG---IYTRIGASDDLAG-----------------------------------GKSTFMVEMEEVALILKEAT- 654 (765)
T ss_dssp EEECCCSE---EEEECCC-----------------------------------------CCSHHHHHHHHHHHHHHHCC-
T ss_pred cceeeHHH---hhccCCHHHHHHh-----------------------------------cccHHHHHHHHHHHHHHhcc-
Confidence 25888887 5666777777643 2588999999999999 64
Q ss_pred CCCCCCCCcEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 245 NTKESVEPEVLLYDEP---TAGLDPIAS-TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEP---tagLD~~~~-~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
+|+++||||| |++||+.+. ..+.+.|.+ .| .|+|++||+++.+. ++
T Consensus 655 ------~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g----------~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 655 ------ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RR----------AYTLFATHYFELTA-LG 704 (765)
T ss_dssp ------TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HT----------CEEEEECCCHHHHT-CC
T ss_pred ------CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CC----------CEEEEEeCCHHHHH-hh
Confidence 6999999999 999999876 467777765 44 59999999987754 44
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.83 E-value=3.7e-22 Score=181.82 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=95.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------CccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-------~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~ 185 (382)
-|++|++++|+||||||||||+++|+|+..+ ..|.+++++.+.. . ..++++++|+..+++. |+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~-----~~~i~~~~~~~~~~~~-~~~ 91 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---R-----PERIREIAQNRGLDPD-EVL 91 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---C-----HHHHHHHHHHTTSCHH-HHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---C-----HHHHHHHHHHcCCCHH-HHh
Confidence 6999999999999999999999999996555 3447777775311 1 1136677887776664 777
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
+|+.+.. ..... .+++.+..+++++........+|+++++||||+++|
T Consensus 92 ~~~~~~~----~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 92 KHIYVAR----AFNSN----------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp HTEEEEE----CCSHH----------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred hcEEEEe----cCChH----------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 7765421 11111 112223333333320000013699999999999999
Q ss_pred HH-------H-----HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHH----HHHHhhchhc
Q 016804 266 PI-------A-----STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS----TIRRAVDRLC 314 (382)
Q Consensus 266 ~~-------~-----~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~----~~~~~aDrv~ 314 (382)
+. . ..++.+.|.++.++ | +|||++||.+. .+..+||+++
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g----------~tvi~vtH~~~~~g~~~~~~~d~~l 195 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYD----------IAVFVTNQVQANGGHILAHSATLRV 195 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT----------CEEEEEEECC---------CCSEEE
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCC----------CeEEEEeecccCcchhhHhhceEEE
Confidence 84 2 23677777777654 5 69999999554 4888888773
No 102
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.83 E-value=2.2e-20 Score=188.74 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=63.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
+..||||||||++||++|+.. +..+|+++||||||++||+..+..+.+.|+++.+++ .++|++||+.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~---~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~----------~~~ii~th~~ 397 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAIN---SYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPD----------LQFIVISLKN 397 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHH---TSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTT----------BEEEEECSCH
T ss_pred cccCCcchHHHHHHHHHHHHh---cCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCC----------CEEEEEECCH
Confidence 446999999999999999830 001599999999999999999999999999986544 5899999996
Q ss_pred HHHHHhhchh
Q 016804 304 STIRRAVDRL 313 (382)
Q Consensus 304 ~~~~~~aDrv 313 (382)
.. ...||++
T Consensus 398 ~~-~~~~d~~ 406 (430)
T 1w1w_A 398 TM-FEKSDAL 406 (430)
T ss_dssp HH-HTTCSEE
T ss_pred HH-HHhCCEE
Confidence 55 5678888
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.82 E-value=8e-24 Score=192.13 Aligned_cols=146 Identities=19% Similarity=0.140 Sum_probs=117.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCC--CCCCHHHHHHhh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF--DSLTVRENVGFL 191 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~--~~lTV~eni~~~ 191 (382)
.++|+++||+||||||||||+++|+|++.| +++|++|++.++ ..+|+.+++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------------------~i~~v~~d~~~~~~~~~~~~~~~~~~ 58 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------------------RVALLPMDHYYKDLGHLPLEERLRVN 58 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------------------GEEEEEGGGCBCCCTTSCHHHHHHSC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------------------CeEEEecCccccCcccccHHHhcCCC
Confidence 578999999999999999999999999864 389999998876 567999987664
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHH----HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC----
Q 016804 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM----KKRVALARSIIFDNTKESVEPEVLLYDEPTAG---- 263 (382)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGq----rQRVaIArAL~~~~~~~a~~P~iLLLDEPtag---- 263 (382)
+. .......+.+.++++.+++.+..++++.++|+|| +||+++|++++. +|+++++||||++
T Consensus 59 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~-------~~~ll~~de~~~~~~d~ 127 (211)
T 3asz_A 59 YD----HPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVIL-------EGILVLYPKELRDLMDL 127 (211)
T ss_dssp TT----SGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEE-------ESTTTTSSHHHHTTCSE
T ss_pred CC----ChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEE-------eehhhccCHHHHHhcCE
Confidence 31 1111113446677888888888888899999997 478999999997 5999999999999
Q ss_pred ---CCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEccCHH
Q 016804 264 ---LDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 264 ---LD~~~~~~l~~lL~~l~-~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
||+.....+.+.+.+.. +.| .|+++++|++.
T Consensus 128 ~i~ld~~~~~~~~r~l~r~~~~~g----------~t~~~~~~~~~ 162 (211)
T 3asz_A 128 KVFVDADADERFIRRLKRDVLERG----------RSLEGVVAQYL 162 (211)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHSC----------CCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhC----------CCHHHHHHHHH
Confidence 99999999999998864 445 48899999853
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.82 E-value=6.5e-21 Score=209.44 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=107.0
Q ss_pred eEEEEeEEEEe-------CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEECCCCCChh
Q 016804 91 LIDCRNVYKSF-------GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 91 ~I~~~nvs~~y-------g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-sG~I~i~G~~i~~~~~~~ 162 (382)
.|.+++...-. +++.+++|+||++++|++++|+||||||||||||+|+++.... .|. -+ ..
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~v----pa- 708 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YV----PA- 708 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CB----SS-
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cc----cc-
Confidence 47777765543 3467999999999999999999999999999999998653211 110 00 00
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
....++++. .+ +..+|+.+...+..+++|+||+|++.|+++ +
T Consensus 709 --~~~~i~~~d---~i--------------------------------~~~ig~~d~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 709 --EEATIGIVD---GI--------------------------------FTRMGAADNIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp --SEEEEECCS---EE--------------------------------EEEC----------CCHHHHHHHHHHHHHH-C
T ss_pred --hhhhhhHHH---HH--------------------------------HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-c
Confidence 000122110 01 122333344455567899999999999999 4
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVE-DLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~-~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
. +|+++||||||+|||+.....+. .+++.+.++ | .|+|++||+++.+ .+||+.
T Consensus 751 ~-------~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g----------~tvl~vTH~~el~-~l~~~~ 805 (918)
T 3thx_B 751 T-------SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK----------SLTLFVTHYPPVC-ELEKNY 805 (918)
T ss_dssp C-------TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC----------CEEEEECSCGGGG-GHHHHT
T ss_pred c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC----------CeEEEEeCcHHHH-HHHhhc
Confidence 3 69999999999999999998887 778888664 4 5999999998766 578876
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=9.1e-23 Score=183.56 Aligned_cols=173 Identities=11% Similarity=0.086 Sum_probs=102.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-----~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++|++|+|+ ..++++ |.+.+|+.++|+|+||||||||++.|+|.. .|+.|++.+.+.-.. .
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~--------~ 71 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV--------A 71 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE--------E
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe--------c
Confidence 589999999997 578888 899999999999999999999999999998 788888765332100 0
Q ss_pred cceEEEEecCCCCC----CCCC---HHHHHHhhHhhc----------C-CCCHHHHHHHHHHHHHHcCCccc-ccCCCCC
Q 016804 166 GLRIGLVFQSAALF----DSLT---VRENVGFLLYEN----------S-KMRDEQISELVKENLAAVGLKGV-EDRLPSE 226 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~----~~lT---V~eni~~~~~~~----------~-~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~ 226 (382)
. .+- +.+.+... +... ....+...+... . ........+.+.++++..++... ...++..
T Consensus 72 ~-~~~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 72 D-GKR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADK 149 (210)
T ss_dssp T-TEE-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred C-CEE-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccC
Confidence 0 011 11112111 0000 111111111000 0 00011223345566777787653 3566788
Q ss_pred CChHHHHH-HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 016804 227 LSGGMKKR-VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 227 LSGGqrQR-VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g 283 (382)
+|+||+|| +..+++++. +|+++++|||||++|+....++++.|.++..++
T Consensus 150 ~s~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 150 LASGARKAQLNMVREAVL-------AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp SCHHHHHHHHHHHHHHHG-------GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCchhHHHHHHHHHHHHH-------hcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 99999999 899999997 488889999999999999999999999987654
No 106
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.80 E-value=8.3e-20 Score=160.53 Aligned_cols=76 Identities=28% Similarity=0.363 Sum_probs=68.1
Q ss_pred ccCCCCCCChHHHHHHHHH------HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 016804 220 EDRLPSELSGGMKKRVALA------RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIA------rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~ 293 (382)
.++++.+||||||||++|| |||+. +|++|||||||+|||+.++..+.+.|+++.++|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~---------- 113 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAG-------EISLLILDEPTPYLDEERRRKLITIMERYLKKI---------- 113 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHS-------SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGS----------
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcC-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHccC----------
Confidence 5678999999999999876 89986 599999999999999999999999999987665
Q ss_pred eEEEEEccCHHHHHHhhchh
Q 016804 294 ASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 294 ~tiIivTHdl~~~~~~aDrv 313 (382)
.|+|++|||+ .+..+||++
T Consensus 114 ~tiiivsH~~-~~~~~~d~i 132 (148)
T 1f2t_B 114 PQVILVSHDE-ELKDAADHV 132 (148)
T ss_dssp SEEEEEESCG-GGGGGCSEE
T ss_pred CEEEEEEChH-HHHHhCCEE
Confidence 4999999998 566788877
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.79 E-value=1.8e-20 Score=203.73 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=105.4
Q ss_pred eEEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEECCCCCChhhh
Q 016804 91 LIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 91 ~I~~~nvs~~y-----g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.|.+++...-. +++.+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..| ..+ ..
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~v----pa--- 642 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYV----PA--- 642 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCB----SS---
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------ccc----ch---
Confidence 46666653222 456799999999 99999999999999999999999997532 222 111 11
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
...++++++| +|+.+++.+|+..+ .+++|++|++...++ .++.
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~--------------------------------~stf~~e~~~~~~il-~~a~- 685 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG--------------------------------RSTFMVEMTETANIL-HNAT- 685 (800)
T ss_dssp SEEEECCCCE---EEEEEC-------------------------------------------CHHHHHHHHHHH-HHCC-
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh--------------------------------hhhhhHHHHHHHHHH-Hhcc-
Confidence 1124777766 56666777766431 123567776544443 3443
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l-~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|+++|||||++|+|+.....+ ..+++.+.++ | .++|++||+++.+ .+||++
T Consensus 686 ------~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g----------~~vl~~TH~~el~-~l~d~~ 739 (800)
T 1wb9_A 686 ------EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK----------ALTLFATHYFELT-QLPEKM 739 (800)
T ss_dssp ------TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC----------CEEEEECSCGGGG-GHHHHS
T ss_pred ------CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccC----------CeEEEEeCCHHHH-HHhhhh
Confidence 6999999999999999877775 7888888874 5 5999999999775 589987
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.78 E-value=3.4e-22 Score=182.11 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=87.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~ 196 (382)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.... ...+.++||++|+.. .. .+++.. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~----~~~~~~ig~~~~~~~--g~---~~~l~~----~- 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV----RQGGRRIGFDVVTLS--GT---RGPLSR----V- 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE----ETTSSEEEEEEEETT--SC---EEEEEE----C-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh----HhhhceEEEEEEecc--cc---eehhhc----c-
Confidence 78999999999999999999999999 999 99999876322 112347999999862 11 112110 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH-HHHH---HHhcCCCCCCCCCcEEEEeC--CCCCCCHHHHH
Q 016804 197 KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV-ALAR---SIIFDNTKESVEPEVLLYDE--PTAGLDPIAST 270 (382)
Q Consensus 197 ~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV-aIAr---AL~~~~~~~a~~P~iLLLDE--PtagLD~~~~~ 270 (382)
..... .........++...+|+|||+++ ++++ |++. +|++||+|| |+..+|+...+
T Consensus 65 ~~~~~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~-------~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 65 GLEPP-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGP-------GQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp CCCCC-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSS-------CCCCEEECCCSTTTTTCSHHHH
T ss_pred cccCC-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhcc-------CCCEEEEeCCCccccccHHHHH
Confidence 00000 00012244556678999999988 4454 5664 699999999 89999997655
Q ss_pred HHHHHHH
Q 016804 271 VVEDLIR 277 (382)
Q Consensus 271 ~l~~lL~ 277 (382)
.+.++++
T Consensus 127 ~l~~~l~ 133 (189)
T 2i3b_A 127 AVRQTLS 133 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 109
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=4.1e-21 Score=194.91 Aligned_cols=165 Identities=16% Similarity=0.245 Sum_probs=99.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+|+++||+++|+++.+++++||+| +|+||||||||||+++|+|+..|+.| .+|..+.. ........+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~---~~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRI---KKTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC--------CCEEEEE
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCC---ccceeeeeE
Confidence 4699999999999999999999998 99999999999999999999986655 23322111 001112258
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
++++|+..+++.+||.||+.++.... .....+.+.+.++ ..++.+++||++||||++.
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~----~~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~------ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD----NSNCWQPVIDYID------------SKFEDYLNAESRVNRRQMP------ 135 (418)
T ss_dssp ECC------CEEEEEEECC---------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCC------
T ss_pred EEEEecCCcccceeeeechhhhhhcc----chhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhcc------
Confidence 99999998888899999998764311 1111111222221 1355677889999999986
Q ss_pred CCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 250 VEPE---VLLYDEPT-AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 250 ~~P~---iLLLDEPt-agLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
+|+ +|++|||| .+||+... +.++++.. + .++|+|.|..+
T Consensus 136 -d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~----------v~iIlVinK~D 178 (418)
T 2qag_C 136 -DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-K----------VNIIPLIAKAD 178 (418)
T ss_dssp -CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-T----------SEEEEEEESTT
T ss_pred -CCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-c----------CcEEEEEEccc
Confidence 599 99999999 69999874 44455543 3 36666666543
No 110
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.77 E-value=8.7e-21 Score=187.83 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=106.1
Q ss_pred eeeEee-eEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCc----cE-EEECCEECCCCCChhhhccceEEEEecCC
Q 016804 105 HILRGV-SFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDK----GE-VYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (382)
Q Consensus 105 ~iL~~v-sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~s----G~-I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~ 176 (382)
+.|+.+ ++.|++|++++|+||||||||||++.|+++. +|++ |+ |+|++++.. .+.++++++|+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--------~~~~i~~i~q~~ 189 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--------RPERIREIAQNR 189 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--------CHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--------CHHHHHHHHHHc
Confidence 355555 6899999999999999999999999999998 7777 67 899886521 112578889988
Q ss_pred CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 016804 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (382)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLL 256 (382)
.+++. ++.+|+.+.. ... |.+|+|++.++++++..-+....+|++||
T Consensus 190 ~~~~~-~v~~ni~~~~----~~~----------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 190 GLDPD-EVLKHIYVAR----AFN----------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp TCCHH-HHGGGEEEEE----CCS----------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CCCHH-HHhhCEEEEe----cCC----------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 77654 7777764421 011 34566777777777631000002699999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 257 YDEPTAGLDPIA------------STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 257 LDEPtagLD~~~------------~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
+||||+++|+.. ..++...|+++.++.+ +|+|+++|.......
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~---------~tvii~~h~~~~~~~ 291 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD---------IAVFVTNQVQARPDA 291 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT---------CEEEEEEECC-----
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC---------cEEEEEccccccccc
Confidence 999999999862 3556666677665521 699999998765543
No 111
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.76 E-value=3.1e-19 Score=161.89 Aligned_cols=167 Identities=12% Similarity=0.060 Sum_probs=110.6
Q ss_pred eeeeEeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc--ceEEEEecCCCCCC
Q 016804 104 KHILRGVSF-KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG--LRIGLVFQSAALFD 180 (382)
Q Consensus 104 ~~iL~~vsl-~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~--~~Ig~V~Q~~~l~~ 180 (382)
.+.|+++.. .+++|++++|+||||||||||++.|++...+++|.|.+.+.+. ....... ..+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE----SRDSIIRQAKQFNWDFEEYIEK- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS----CHHHHHHHHHHTTCCCGGGBTT-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc----CHHHHHHHHHHhcchHHHHhhC-
Confidence 457888887 8999999999999999999999999999888888888766432 1111110 0133333321100
Q ss_pred CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc--EEEEe
Q 016804 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYD 258 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~--iLLLD 258 (382)
++.+ ...... .++ ..+. ....|.++.++...+.+... +|+ +|++|
T Consensus 84 ------~~~~----~~~~~~------------~~~-~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~llilD 130 (235)
T 2w0m_A 84 ------KLII----IDALMK------------EKE-DQWS---LVNLTPEELVNKVIEAKQKL-------GYGKARLVID 130 (235)
T ss_dssp ------TEEE----EECCC-----------------CTTB---CSSCCHHHHHHHHHHHHHHH-------CSSCEEEEEE
T ss_pred ------CEEE----Eecccc------------ccC-ceee---ecCCCHHHHHHHHHHHHHhh-------CCCceEEEEE
Confidence 0000 000000 001 1111 12449999988887777654 699 99999
Q ss_pred CCCCCC--CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH--------HHHHHhhchhcccc
Q 016804 259 EPTAGL--DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH--------STIRRAVDRLCLFQ 317 (382)
Q Consensus 259 EPtagL--D~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl--------~~~~~~aDrv~~~~ 317 (382)
|||+.+ |+.....+.+.|+++.++.+ .|+|++||+. ..+.++||++++|+
T Consensus 131 e~~~~~~~d~~~~~~~~~~l~~~~~~~~---------~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~ 190 (235)
T 2w0m_A 131 SVSALFLDKPAMARKISYYLKRVLNKWN---------FTIYATSQYAITTSQAFGFGVEHVADGIIRFR 190 (235)
T ss_dssp TGGGGSSSCGGGHHHHHHHHHHHHHHTT---------EEEEEEEC-----------CHHHHCSEEEEEE
T ss_pred CchHhhcCCHHHHHHHHHHHHHHHHhCC---------CeEEEEeccCcccccccccchheeeeEEEEEE
Confidence 999888 99999999999999976521 7999999999 45888899885544
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.75 E-value=4.2e-18 Score=161.97 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=106.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
.+++|++++|+||||||||||++.+++... .|++. .|.+.. ...++.|+..+... ..+...+.. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~--------~~~~v~~~~~e~~~---~~~~~r~~~-~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL--------PTGPVIYLPAEDPP---TAIHHRLHA-L 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC--------CCCCEEEEESSSCH---HHHHHHHHH-H
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccC--------CCccEEEEECCCCH---HHHHHHHHH-H
Confidence 378999999999999999999999998664 57663 454321 11247787654321 012222211 1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC--CCCHHHH-
Q 016804 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA--GLDPIAS- 269 (382)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta--gLD~~~~- 269 (382)
...... ....++++.+++.+..++.+..||+||+|++ ++++. +|+++|+||||+ ++|+...
T Consensus 91 --g~~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~-------~~~livlDe~~~~~~~d~~~~~ 154 (279)
T 1nlf_A 91 --GAHLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAE-------GRRLMVLDTLRRFHIEEENASG 154 (279)
T ss_dssp --HTTSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHT-------TCSEEEEECGGGGCCSCTTCHH
T ss_pred --HhhcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcC-------CCCEEEECCHHHhcCCCcCchH
Confidence 111222 2245678888888888889999999998865 67875 599999999999 9998544
Q ss_pred --HHHHHHHHHHHH-cCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 270 --TVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 270 --~~l~~lL~~l~~-~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
.++++.|+++.+ .| +|||+++|+.....
T Consensus 155 ~~~~~~~~L~~l~~~~g----------~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTG----------CSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHHHHHHC----------CEEEEEEEC-----
T ss_pred HHHHHHHHHHHHHHHcC----------CEEEEEecCCCccc
Confidence 788888888864 45 69999999987763
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.75 E-value=9.8e-23 Score=201.86 Aligned_cols=164 Identities=13% Similarity=0.153 Sum_probs=111.6
Q ss_pred eeEeeeEEEeC--CcEEEEEcCCCccHHHHHHHHHcCCCCCc----cEEEEC----CEECCCCCChhhhccceEEEEecC
Q 016804 106 ILRGVSFKIRH--GEAVGIIGPSGTGKSTILKIIAGLLAPDK----GEVYIR----GRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 106 iL~~vsl~i~~--Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s----G~I~i~----G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |+|+++ |.++ ... ..+. .+|++++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~-~~~~--~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQ-YSDY--PQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSC-TTTH--HHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCC-hhHH--HHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 888774 3322 111 1111 135666665
Q ss_pred CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 016804 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iL 255 (382)
+.+|. .|+.+|+.+.. .. ..++.+..+|+|++||..+++++.. .+|+++
T Consensus 233 ~~~~~-~t~~~nl~~~~-----~~-------------------~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~ll 281 (365)
T 1lw7_A 233 YIDYA-VRHSHKIAFID-----TD-------------------FITTQAFCIQYEGKAHPFLDSMIKE------YPFDVT 281 (365)
T ss_dssp HHHHH-HHHCSSEEEES-----SC-------------------HHHHHHHHHHHHSCCCHHHHHHHHH------SCCSEE
T ss_pred HHHHH-HhccCCEEEEe-----CC-------------------chHHHHHHHHHcCCCCHHHHHHHhh------cCCCEE
Confidence 54443 35555543311 11 1111122456677888888888753 269999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 256 LYDE---PT------AGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 256 LLDE---Pt------agLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+||| |+ .++|+..+..+.+.|+++.++ + .++|+++|. .+..++++++.+
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~----------~~ililde~-~~~~r~~~~i~~ 340 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYK----------VPYIEIESP-SYLDRYNQVKAV 340 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGG----------CCCEEEECS-SHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcC----------CCEEEeCCC-CHHHHHHHHHHH
Confidence 9999 65 589999999999999998654 4 489999976 577788888833
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.74 E-value=8.3e-19 Score=174.49 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=98.1
Q ss_pred eEEEEe--CCeeeeEeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEECCCCCChhhhc
Q 016804 96 NVYKSF--GEKHILRGVSF-------KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 96 nvs~~y--g~~~iL~~vsl-------~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.++++| .....|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ +|.|...+.++ ... .
T Consensus 93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~-----~ 166 (356)
T 3jvv_A 93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV-----H 166 (356)
T ss_dssp EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC-----C
T ss_pred EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh-----h
Confidence 444454 22345666665 67889999999999999999999999999997 56665443222 111 1
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
....++++|........+..+ +|||||.+
T Consensus 167 ~~~~~~v~q~~~~~~~~~~~~-------------------------------------------------~La~aL~~-- 195 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDTLGFSE-------------------------------------------------ALRSALRE-- 195 (356)
T ss_dssp CCSSSEEEEEEBTTTBSCHHH-------------------------------------------------HHHHHTTS--
T ss_pred hccccceeeeeeccccCCHHH-------------------------------------------------HHHHHhhh--
Confidence 112456666543222222211 99999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
+|++||+|||| |.+. .+.+.++...| .++|+++|+.+.+ .++||++.|.
T Consensus 196 -----~PdvillDEp~---d~e~----~~~~~~~~~~G----------~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 196 -----DPDIILVGEMR---DLET----IRLALTAAETG----------HLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp -----CCSEEEESCCC---SHHH----HHHHHHHHHTT----------CEEEEEESCSSHH-HHHHHHHHTS
T ss_pred -----CcCEEecCCCC---CHHH----HHHHHHHHhcC----------CEEEEEEccChHH-HHHHHHhhhc
Confidence 59999999999 6554 34444455666 4899999999988 7899997764
No 115
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=5.4e-20 Score=186.97 Aligned_cols=181 Identities=14% Similarity=0.093 Sum_probs=116.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~--vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.+++++ +++|++.+ |+++||++++|++ ++|+||||||||||+|+|+|+. ++|.++....... ....
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~--~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGV--QLQS 83 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSC--EEEE
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccc--eEee
Confidence 477788 89998887 9999999999999 9999999999999999999994 3444432211111 1226
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCC--CC--HHHHHHHHHHHHHHc-CCcc----cccCCC-----------CCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSK--MR--DEQISELVKENLAAV-GLKG----VEDRLP-----------SELS 228 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~--~~--~~~~~~~v~~~L~~~-gL~~----~~~~~~-----------~~LS 228 (382)
++|++|++.+++.+||.||+.++...... +. .+.+.+...+++... ++.. ..+.++ ..|+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 99999999988889999999775421000 00 011234445555554 4431 122221 2466
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCCCCCCCCCceEEEEEccCH
Q 016804 229 GGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 229 GGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~-l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
-.+ +.|+++|.. +++||++|||+..|.+.....+.+.+++ |...| ++|+.++.|-
T Consensus 164 ~~D---ieilk~L~~-------~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~g----------i~I~~is~~d 219 (427)
T 2qag_B 164 SLD---LVTMKKLDS-------KVNIIPIIAKADAISKSELTKFKIKITSELVSNG----------VQIYQFPTDD 219 (427)
T ss_dssp HHH---HHHHHHTCS-------CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTB----------CCCCCCC---
T ss_pred HHH---HHHHHHHhh-------CCCEEEEEcchhccchHHHHHHHHHHHHHHHHcC----------CcEEecCCCc
Confidence 555 799999974 6999999999999999999889888886 76655 5788888753
No 116
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.70 E-value=1.5e-21 Score=192.51 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=124.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--hhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~~~~~~ 168 (382)
+|++++++++|+.+.+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.|.++....... ...+.+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 578899999998788999999999999999999999999999999999999999999999998864321100 011235
Q ss_pred EEEEecCCCCCCCCC------------HHHHHHh-----------------------------hHhhcCCCCHHHH---H
Q 016804 169 IGLVFQSAALFDSLT------------VRENVGF-----------------------------LLYENSKMRDEQI---S 204 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lT------------V~eni~~-----------------------------~~~~~~~~~~~~~---~ 204 (382)
+++++|++.+|...+ +.|.+.. .+........++. .
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 899999998875321 2332211 0000000001111 0
Q ss_pred HHHHHHHHHcCCcccccC-CCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 016804 205 ELVKENLAAVGLKGVEDR-LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK 281 (382)
Q Consensus 205 ~~v~~~L~~~gL~~~~~~-~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~ 281 (382)
+.+.+....+.+ ...|. ...++|+|++|++..|++++.... ...+|+++. ||++|.....++++.|.++.+
T Consensus 189 ~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~-~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 189 KGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPS-ATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSB-TTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccc-cCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111122222223 23343 235689999999999999985100 000378876 999999999999999998765
No 117
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.70 E-value=2.2e-20 Score=174.45 Aligned_cols=145 Identities=20% Similarity=0.193 Sum_probs=105.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~---Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+.. .. . ...+++++|+..+++..++.+++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~---~~--~-~~~i~~~~~~~~~~~~~~v~~~l~~~l 99 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS---TE--V-GEMAKQYIEKSLLVPDHVITRLMMSEL 99 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT---CH--H-HHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC---Ch--H-HHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999 999999999998875421 11 1 113566788888888889999997643
Q ss_pred hh-------cCCCCHHHHHHHHHHHH--HHcC------------CcccccCCCCCCChHHHHHHHHHHHH-hcCCCCCCC
Q 016804 193 YE-------NSKMRDEQISELVKENL--AAVG------------LKGVEDRLPSELSGGMKKRVALARSI-IFDNTKESV 250 (382)
Q Consensus 193 ~~-------~~~~~~~~~~~~v~~~L--~~~g------------L~~~~~~~~~~LSGGqrQRVaIArAL-~~~~~~~a~ 250 (382)
.. ..+..... .+++.+. ..++ +....++++.+||| |+ +|| +.
T Consensus 100 ~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~------- 163 (246)
T 2bbw_A 100 ENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN------- 163 (246)
T ss_dssp HTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS-------
T ss_pred HhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC-------
Confidence 21 11122111 1222222 1233 33445777889999 66 777 54
Q ss_pred CCcEEEEe----CCCCCCCHHHHHHHHHHHHHHHHc
Q 016804 251 EPEVLLYD----EPTAGLDPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 251 ~P~iLLLD----EPtagLD~~~~~~l~~lL~~l~~~ 282 (382)
+|++++|| |||++||+.++..+.+.|+++.++
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 79999999 999999999999999999988765
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.70 E-value=9.7e-21 Score=168.67 Aligned_cols=141 Identities=17% Similarity=0.114 Sum_probs=94.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
.+++|++++|+||||||||||+++|+|+ |+.|.|.++|.++..... .+..++|++|+.. +..++.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~----~~~~~~~~~~~~~--~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK----HGRIDPWLPQSHQ--QNRMIMQIAADVA 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC----SSCCCTTSSSHHH--HHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh----cccccCCccchhh--hhHHHHHHHHHHH
Confidence 4789999999999999999999999998 789999999866421110 1123577777654 3468899987643
Q ss_pred hhc--CCCCHHHHHHHHHHHHHHcCCcccc--cCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHH
Q 016804 193 YEN--SKMRDEQISELVKENLAAVGLKGVE--DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (382)
Q Consensus 193 ~~~--~~~~~~~~~~~v~~~L~~~gL~~~~--~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~ 268 (382)
... .+.. . .++.+++.+++..+. +..+..+|+|++||+++||++.+ +|+++ +|+..
T Consensus 77 ~~~~~~~~~-~----~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r-------~~~~l--------ld~~~ 136 (191)
T 1zp6_A 77 GRYAKEGYF-V----ILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR-------GGDSL--------SDPLV 136 (191)
T ss_dssp HHHHHTSCE-E----EECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTT-------CTTSC--------CCHHH
T ss_pred HHHhccCCe-E----EEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc-------CCCcc--------CCHHH
Confidence 211 0000 0 001111112232222 44567899999999999999986 47765 68888
Q ss_pred HHHHHHHHHHHHH
Q 016804 269 STVVEDLIRSVHK 281 (382)
Q Consensus 269 ~~~l~~lL~~l~~ 281 (382)
...+.+.+..+..
T Consensus 137 ~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 137 VADLHSQFADLGA 149 (191)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHHHhccCc
Confidence 8878777766643
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.69 E-value=3.1e-20 Score=165.87 Aligned_cols=172 Identities=14% Similarity=0.054 Sum_probs=110.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~ 196 (382)
|++++|+||||||||||+++|++ |.+|.++++|.++.. ...+++++|....++..++++|+.+......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH--------MVVGGYRPPWESDELLALTWKNITDLTVNFL 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT--------TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh--------hhccccccCccchhHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999997 678999999865421 1135677776544445678888866432110
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccCCCCCC--ChHHHHHHHHHH------HHhcCCCCCCCCCcEEEEeCCCCCCCHHH
Q 016804 197 KMRDEQISELVKENLAAVGLKGVEDRLPSEL--SGGMKKRVALAR------SIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (382)
Q Consensus 197 ~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~L--SGGqrQRVaIAr------AL~~~~~~~a~~P~iLLLDEPtagLD~~~ 268 (382)
.... ..+++.+. .....+...++ |+||+|++.++. +++. +|+...+|+ +||+..
T Consensus 71 ~~~~-------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~-------R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 LAQN-------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR-------RDALRKKDE---QMGERC 132 (189)
T ss_dssp HTTC-------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHH-------HTTTSCC-------CGGG
T ss_pred hcCC-------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHH-------HHHhccccc---cCCHHH
Confidence 0000 00011110 00000111234 889988988887 8876 477777784 899988
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC-HHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEe
Q 016804 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ-HSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLY 347 (382)
Q Consensus 269 ~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd-l~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~ 347 (382)
... ++.+.++.+.+ .++|.+||. ++++.++||+| + +
T Consensus 133 ~~~-~~~~~~~~~~~----------~~ii~tsh~~~~~~e~~~~~i------------------------------~--~ 169 (189)
T 2bdt_A 133 LEL-VEEFESKGIDE----------RYFYNTSHLQPTNLNDIVKNL------------------------------K--T 169 (189)
T ss_dssp GHH-HHHHHHTTCCT----------TSEEECSSSCGGGHHHHHHHH------------------------------H--H
T ss_pred HHH-HHHHhhcCCCc----------cEEEeCCCCChhhHHHHHHHH------------------------------h--h
Confidence 877 77887775443 489999999 99999999999 5 8
Q ss_pred CCeEEEEeccccc
Q 016804 348 EGKIVWQGMTHEF 360 (382)
Q Consensus 348 ~G~i~~~g~~~~~ 360 (382)
+|+++.+|+++-+
T Consensus 170 ~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 170 NPRFIFCMAGDPL 182 (189)
T ss_dssp CGGGSCC------
T ss_pred CCcEEEeecCCch
Confidence 9999999966543
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.68 E-value=1.1e-18 Score=162.34 Aligned_cols=129 Identities=13% Similarity=0.171 Sum_probs=89.8
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCH----H
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV----R 185 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV----~ 185 (382)
-..++|++++|+||||||||||+++|+|+++| .+|.|.+.+++... . .+..++|+||++.+|+.+++ .
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~--e~~gi~y~fq~~~~f~~~~~~~~f~ 84 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----G--EVHGEHYFFVNHDEFKEMISRDAFL 84 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----T--CCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----c--cccCceEEECCHHHHHHHHhcCHHH
Confidence 45789999999999999999999999999986 68999998865321 1 12258999998877765555 3
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
||+.+... +.|-.+++ +..+|- +++++||| ||
T Consensus 85 E~~~~~~~---------------------------------~yg~~~~~--v~~~l~--------~G~illLD-----LD 116 (219)
T 1s96_A 85 EHAEVFGN---------------------------------YYGTSREA--IEQVLA--------TGVDVFLD-----ID 116 (219)
T ss_dssp EEEEETTE---------------------------------EEEEEHHH--HHHHHT--------TTCEEEEE-----CC
T ss_pred HHHHHHhc---------------------------------cCCCCHHH--HHHHHh--------cCCeEEEE-----EC
Confidence 33322110 00000111 223332 48999999 99
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 266 ~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
+.....+.+.+. ++ .||+++||+++++.+
T Consensus 117 ~~~~~~i~~~l~----~~----------~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 117 WQGAQQIRQKMP----HA----------RSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHHHHHHHCT----TC----------EEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHcc----CC----------EEEEEECCCHHHHHH
Confidence 999999998876 34 699999999998765
No 121
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.68 E-value=9.2e-17 Score=144.60 Aligned_cols=79 Identities=27% Similarity=0.355 Sum_probs=65.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
..+.+..||||||||++|||+|+..+ ...|+++||||||++||+.++..+.++|+++.++ .++|++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~---~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-----------~~~ivi 123 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQK---FKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-----------SQFIVI 123 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHH---HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-----------SEEEEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcc---cCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-----------CEEEEE
Confidence 45567899999999999999997310 0137999999999999999999999999998654 389999
Q ss_pred ccCHHHHHHhhchh
Q 016804 300 THQHSTIRRAVDRL 313 (382)
Q Consensus 300 THdl~~~~~~aDrv 313 (382)
||+... ...||++
T Consensus 124 th~~~~-~~~ad~i 136 (173)
T 3kta_B 124 TLRDVM-MANADKI 136 (173)
T ss_dssp CSCHHH-HTTCSEE
T ss_pred EecHHH-HHhCCEE
Confidence 999765 4689988
No 122
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.68 E-value=7.7e-18 Score=167.70 Aligned_cols=123 Identities=24% Similarity=0.188 Sum_probs=94.6
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEEC-CEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIR-GRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-p~sG~I~i~-G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
-++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.++ |+.... ....++++++|+..+++..+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t------t~~~~i~~v~q~~~l~dtpg 277 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT------TTAARLYHFPHGGDVIDSPG 277 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------------CCCEEEECTTSCEEEECHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc------eEEEEEEEECCCCEecCccc
Confidence 45666664 4899999999999999999999999999 999999997 764321 12336999999999998888
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
++++ ++ .....++..+.+.++++.+|+.++.++++.+|| ||+||++||++++
T Consensus 278 v~e~---~l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 278 VREF---GL---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HHTC---CC---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHHh---hh---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8884 22 234566667778889999999999999999999 9999999999997
No 123
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.68 E-value=8.7e-20 Score=161.81 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=76.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
++.++++++|+++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.. .... + + +
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~---~~~~-~-~--~ 79 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE---EYNI-A-G--K 79 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE---EEEE-T-T--E
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee---eccC-C-C--c
Confidence 44567788898888999999999999999999999999999999999999 999999999976531 1111 1 2 7
Q ss_pred EecCCCCCCCCCHHHHHHh-hH
Q 016804 172 VFQSAALFDSLTVRENVGF-LL 192 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~-~~ 192 (382)
++|++.+| .+|+.||+.+ ++
T Consensus 80 ~~q~~~l~-~ltv~e~l~~~g~ 100 (158)
T 1htw_A 80 MIYHFDLY-RLADPEELEFMGI 100 (158)
T ss_dssp EEEEEECT-TCSCTTHHHHSTH
T ss_pred ceeccccc-cCCcHHHHHHcCh
Confidence 99999999 7999999954 44
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.67 E-value=7.9e-19 Score=181.20 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=112.6
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC----hhhhccceEEEEecCCCCCCCC
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~----~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
-+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+...... ..+..+.+|+|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999998876532100 0111233599999999888888
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC-cEEEEeCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP-EVLLYDEPT 261 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P-~iLLLDEPt 261 (382)
++++|+.++... +.+- -+++..|+......++.+| +|++.++|++.. ..| ++||...|+
T Consensus 363 tV~e~l~~a~~~--~~Dv--------VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~------~~P~evLLvLDat 422 (503)
T 2yhs_A 363 VIFDAIQAAKAR--NIDV--------LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDV------EAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHT--TCSE--------EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCT------TCSSEEEEEEEGG
T ss_pred HHHHHHHHHHhc--CCCE--------EEEeCCCccchhhhHHHHH----HHHHHHHHHhcc------CCCCeeEEEecCc
Confidence 999999886532 1110 0233334332222222233 488999998753 246 466566688
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 262 AGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 262 agLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
+|.|.. +.++.+++. + .|.|++|| ++...+.
T Consensus 423 tGq~al------~~ak~f~~~~~----------itgvIlTK-LD~takg 454 (503)
T 2yhs_A 423 TGQNAV------SQAKLFHEAVG----------LTGITLTK-LDGTAKG 454 (503)
T ss_dssp GTHHHH------HHHHHHHHHTC----------CSEEEEEC-GGGCSCC
T ss_pred ccHHHH------HHHHHHHhhcC----------CCEEEEEc-CCCcccc
Confidence 886654 335555544 3 48899999 4443333
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.66 E-value=5.8e-18 Score=168.22 Aligned_cols=149 Identities=17% Similarity=0.242 Sum_probs=108.5
Q ss_pred EEEeEEEE---eCC--eeee---------EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCC
Q 016804 93 DCRNVYKS---FGE--KHIL---------RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158 (382)
Q Consensus 93 ~~~nvs~~---yg~--~~iL---------~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~ 158 (382)
++++++|+ |++ ..+| +++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|.. .+
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 67788887 753 3455 99999999999999999999999999999999999999999999852 21
Q ss_pred CChhhhccceEEEEe-cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHH
Q 016804 159 ISDEEISGLRIGLVF-QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 159 ~~~~~~~~~~Ig~V~-Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaI 237 (382)
.... .+..++|++ |++.+ .++++..+|..|
T Consensus 215 ~~~~--~~~~v~~v~~q~~~~-----------------------------------------------~~~~~~t~~~~i 245 (361)
T 2gza_A 215 FLPD--HPNHVHLFYPSEAKE-----------------------------------------------EENAPVTAATLL 245 (361)
T ss_dssp CCTT--CSSEEEEECC---------------------------------------------------------CCHHHHH
T ss_pred Cccc--cCCEEEEeecCcccc-----------------------------------------------ccccccCHHHHH
Confidence 1111 233689998 65431 012333477888
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
+.++.. +|+.+++||+.. .++.+.|+.+.. |+ .|++.++|..+ +...+||+..+.
T Consensus 246 ~~~l~~-------~pd~~l~~e~r~-------~~~~~~l~~l~~-g~---------~~~l~t~H~~~-~~~~~~Rl~~l~ 300 (361)
T 2gza_A 246 RSCLRM-------KPTRILLAELRG-------GEAYDFINVAAS-GH---------GGSITSCHAGS-CELTFERLALMV 300 (361)
T ss_dssp HHHTTS-------CCSEEEESCCCS-------THHHHHHHHHHT-TC---------CSCEEEEECSS-HHHHHHHHHHHH
T ss_pred HHHHhc-------CCCEEEEcCchH-------HHHHHHHHHHhc-CC---------CeEEEEECCCC-HHHHHHHHHHHH
Confidence 888864 699999999986 345667777754 32 37899999965 788899996654
No 126
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.66 E-value=4.9e-18 Score=167.15 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=104.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh----hccceEEEEecCCCCCCCCCHHHHHH
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE----ISGLRIGLVFQSAALFDSLTVRENVG 189 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~----~~~~~Ig~V~Q~~~l~~~lTV~eni~ 189 (382)
.++|++++|+||||||||||+++|+|+++|++|+|.+.|.++........ ..+..+.+++|...++|.++|++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998754321111 12234779999999999999999998
Q ss_pred hhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHH
Q 016804 190 FLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269 (382)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~ 269 (382)
++..... +. -+++..|+.+.....+.+|| .++|++.. ++++++||.++.
T Consensus 206 ~~~~~~~--d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~-------de~llvLDa~t~------- 254 (328)
T 3e70_C 206 HAKARGI--DV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKP-------NLVIFVGDALAG------- 254 (328)
T ss_dssp HHHHHTC--SE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCC-------SEEEEEEEGGGT-------
T ss_pred HHHhccc--hh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcC-------CCCEEEEecHHH-------
Confidence 7542111 00 01333444433334444444 48999975 478888886654
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 270 ~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
..+.+.++.+.+.-. .|+|++||.
T Consensus 255 ~~~~~~~~~~~~~~~---------it~iilTKl 278 (328)
T 3e70_C 255 NAIVEQARQFNEAVK---------IDGIILTKL 278 (328)
T ss_dssp THHHHHHHHHHHHSC---------CCEEEEECG
T ss_pred HHHHHHHHHHHHhcC---------CCEEEEeCc
Confidence 355566677765421 589999994
No 127
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.65 E-value=9.2e-17 Score=145.19 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=95.5
Q ss_pred eeeEeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 105 HILRGVSF-KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 105 ~iL~~vsl-~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
+.|+.+.. .+++|++++|+||||||||||++.|++ .+..+ +.|+..+..+ +
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~----------------------v~~i~~~~~~----~ 58 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK----------------------VAYVDTEGGF----S 58 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE----------------------EEEEESSCCC----C
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc----------------------EEEEECCCCC----C
Confidence 34555554 689999999999999999999999999 22222 3333322211 1
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHH--HHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM--KKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGq--rQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
. +.+.-.. ...+...+ ++++.+ .+.++|+++ +|+++.+++++.+ +|+++++||||
T Consensus 59 ~-~~~~~~~-~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~------~~~lliiD~~~ 115 (220)
T 2cvh_A 59 P-ERLVQMA-ETRGLNPE-------EALSRF--------ILFTPSDFKEQRRVIGSLKKTVDS------NFALVVVDSIT 115 (220)
T ss_dssp H-HHHHHHH-HTTTCCHH-------HHHHHE--------EEECCTTTSHHHHHHHHHHHHCCT------TEEEEEEECCC
T ss_pred H-HHHHHHH-HhcCCChH-------HHhhcE--------EEEecCCHHHHHHHHHHHHHHhhc------CCCEEEEcCcH
Confidence 1 1111100 01112211 122222 223445554 5688888899851 49999999999
Q ss_pred CCCCHHH--------HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHH-------------HHHHhhchhcccc
Q 016804 262 AGLDPIA--------STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS-------------TIRRAVDRLCLFQ 317 (382)
Q Consensus 262 agLD~~~--------~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~-------------~~~~~aDrv~~~~ 317 (382)
+.+|+.. ...+.+.|+++.++ + .|+|+++|... .+..+||++++|+
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~----------~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~ 183 (220)
T 2cvh_A 116 AHYRAEENRSGLIAELSRQLQVLLWIARKHN----------IPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLD 183 (220)
T ss_dssp CCTTGGGGSSTTHHHHHHHHHHHHHHHHHHT----------CCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEE
T ss_pred HHhhhcCchHHHHHHHHHHHHHHHHHHHHcC----------CEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEE
Confidence 9999743 24455667777665 4 58999999865 5678888885554
No 128
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.64 E-value=5.9e-18 Score=164.17 Aligned_cols=123 Identities=20% Similarity=0.117 Sum_probs=88.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEECCCCCChhhhccceEEEEecCCCCC-----CCCCH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAALF-----DSLTV 184 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i---~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~-----~~lTV 184 (382)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++.... ......++|||+|+|.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 44579999999999999999999999 99999999999 898764321 111112489999998653 67899
Q ss_pred HHHH--Hhh----Hh-hcCC-CCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHH
Q 016804 185 RENV--GFL----LY-ENSK-MRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 185 ~eni--~~~----~~-~~~~-~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIAr 239 (382)
+|+ .|+ +. ...+ ....+...++.++++.++|.+ ..++++..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 454 10 1111 222233456889999999986 789999999999999999987
No 129
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.63 E-value=2.2e-20 Score=182.32 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=106.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC--------CCCccEEEECCEECCCCCC--------------hhhhccceEEEE---
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL--------APDKGEVYIRGRKRAGLIS--------------DEEISGLRIGLV--- 172 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~--------~p~sG~I~i~G~~i~~~~~--------------~~~~~~~~Ig~V--- 172 (382)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.++..... ..+. ...++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~-~~~l~~l~~~ 83 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNEL-EDALLDLLDN 83 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCH-HHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHH-HHHHHHHHhH
Confidence 589999999999999999999997 7899999999998754311 0111 1137777
Q ss_pred ecCCCCCCCCCHHHHHHhhHhhc--CCC-CHHHHH--HHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 173 FQSAALFDSLTVRENVGFLLYEN--SKM-RDEQIS--ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~--~~~-~~~~~~--~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|++.+++..++.||+.++.... ... ...... ..+..++..+++.++.++++ +||+||+||+..+++++.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~---- 158 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLT---- 158 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEE----
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEE----
Confidence 68877666678888876531000 000 000000 01112334455555554444 799999999998899886
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+|+++ ||| .++.+.|++++ .+ ++|+++||+...+.
T Consensus 159 ---k~dl~--de~---------~~l~~~l~~l~-~~----------~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 159 ---KTDVA--GEA---------EKLHERLARIN-AR----------APVYTVTHGDIDLG 193 (318)
T ss_dssp ---CTTTC--SCT---------HHHHHHHHHHC-SS----------SCEEECCSSCCCGG
T ss_pred ---CcccC--CHH---------HHHHHHHHHhC-CC----------CeEEEecccCCCHH
Confidence 58877 998 67788888875 33 58999999744333
No 130
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.62 E-value=7.6e-17 Score=160.93 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=96.3
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
.+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + ..+..++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~-----~~~~~~~~v~Q~~------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y-----VFKHKKSIVNQRE------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S-----CCCCSSSEEEEEE-------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h-----hhccCceEEEeee-------
Confidence 3566665 7899999999999999999999999999998 899987765432 1 1123578888841
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag 263 (382)
+|++ +..| +.+|+++|.. +|++|++|||+
T Consensus 191 ------------------------------~g~~------~~~~------~~~l~~~L~~-------~pd~illdE~~-- 219 (372)
T 2ewv_A 191 ------------------------------VGED------TKSF------ADALRAALRE-------DPDVIFVGEMR-- 219 (372)
T ss_dssp ------------------------------BTTT------BSCS------HHHHHHHTTS-------CCSEEEESCCC--
T ss_pred ------------------------------cCCC------HHHH------HHHHHHHhhh-------CcCEEEECCCC--
Confidence 2221 1233 4699999986 69999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 264 LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
|+... ..+++.. ..| .+++.++|+.+ +..++||++.|.
T Consensus 220 -d~e~~---~~~l~~~-~~g----------~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 220 -DLETV---ETALRAA-ETG----------HLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp -SHHHH---HHHHHHH-TTT----------CEEEECCCCCS-HHHHHHHHHHTS
T ss_pred -CHHHH---HHHHHHH-hcC----------CEEEEEECcch-HHHHHHHHHHhc
Confidence 77653 3444443 345 48999999966 788999986553
No 131
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.59 E-value=3.3e-16 Score=143.63 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=35.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc--CCCC-----CccEEEECCEE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAG--LLAP-----DKGEVYIRGRK 154 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~G--l~~p-----~sG~I~i~G~~ 154 (382)
-|++|++++|+||||||||||++.|++ +.+| ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 6665 56777777653
No 132
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.57 E-value=1.2e-17 Score=149.98 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=83.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCC---ChhhhccceEE----EEecCCCCCCCCCHHHH
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLI---SDEEISGLRIG----LVFQSAALFDSLTVREN 187 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~---~~~~~~~~~Ig----~V~Q~~~l~~~lTV~en 187 (382)
++++|+|+||||||||+++|+|+++|+ .|+|.++|.++.... .+.++ ..++| +++|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r-~~~ig~~~~~~~~~~~~~i----~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWK-IYNSGADVVIASPVKLAFI----RR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHH-HHHHTCEEEEECSSEEEEE----EE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHH-HHhcCCceEEECCCcEEEE----ec-
Confidence 589999999999999999999999998 899999998865432 22221 11355 8899887661 00
Q ss_pred HHhhHhhcCCCCHHHHHHHHHHHHHH-c-CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEE-------EEe
Q 016804 188 VGFLLYENSKMRDEQISELVKENLAA-V-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL-------LYD 258 (382)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~L~~-~-gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iL-------LLD 258 (382)
...+ ....+.+.++. + |++...- ..|||||+||++||||++.+ |++. +=|
T Consensus 77 ----------~~~~-~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~-------p~i~~~~~~a~~~~ 135 (171)
T 2f1r_A 77 ----------VSEE-EGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEV-------EHFRQGRILAVVCD 135 (171)
T ss_dssp ----------CCHH-HHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGG-------GGGCSSCEEEEECS
T ss_pred ----------CChh-hhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCC-------CccCccceEEEEec
Confidence 0111 01123334443 3 4443222 24999999999999999985 5542 235
Q ss_pred CCCCC---CCHHHHHHHHHHHHHHHHcC
Q 016804 259 EPTAG---LDPIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 259 EPtag---LD~~~~~~l~~lL~~l~~~g 283 (382)
.|..+ +|......+.+.+.+..++|
T Consensus 136 ~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 136 ERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 54322 33445567777777666665
No 133
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.57 E-value=2.3e-17 Score=159.69 Aligned_cols=111 Identities=20% Similarity=0.142 Sum_probs=77.4
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEECCCCCChhhhccceEEEEecCCC-----------
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAA----------- 177 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i---~G~~i~~~~~~~~~~~~~Ig~V~Q~~~----------- 177 (382)
|++..|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++..... .....++|||+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEEcCCCCEEEECcCCCccCCCcCCH
Confidence 345679999999999999999999999999999999999 8988654321 111124899999985
Q ss_pred -----CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCCh
Q 016804 178 -----LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSG 229 (382)
Q Consensus 178 -----l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSG 229 (382)
+|+.+|+ +|+.|+...+ ..+...++.++|+.++|. +..+++|.+||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5888999 9998853211 122345688999999995 788999999985
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.56 E-value=7e-19 Score=178.49 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=106.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-h-hccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-E-ISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~-~~~~~ 168 (382)
.++++++++.|+...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+.++....... . ....+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 46677888888767788888 64 899999999999999999999999999999999999987653211100 0 01113
Q ss_pred EEEEe---------cCCCC--CCC----CCHHHHHHhhHhhcC---CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChH
Q 016804 169 IGLVF---------QSAAL--FDS----LTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGG 230 (382)
Q Consensus 169 Ig~V~---------Q~~~l--~~~----lTV~eni~~~~~~~~---~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGG 230 (382)
+++.| |+|.+ +.. .|+.+++.+....+. ........+ +.+.|..+|+.... .+.+||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHH
Confidence 55655 98875 333 589999987542211 001111112 22357778887653 67899999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEE
Q 016804 231 MKKRVALARSIIFDNTKESVEPEVLL 256 (382)
Q Consensus 231 qrQRVaIArAL~~~~~~~a~~P~iLL 256 (382)
|+|| |||+|+. +|++..
T Consensus 298 ~~QR--LaraL~~-------~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCP-------DCKEPY 314 (418)
T ss_dssp EEEE--EEEEECT-------TTCEEE
T ss_pred HHHH--hhhhhcC-------CCCccC
Confidence 9999 9999986 699865
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.54 E-value=1.9e-15 Score=133.90 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=76.1
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 016804 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (382)
Q Consensus 111 sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~ 190 (382)
+|++++|+.++|+||||||||||+++|++.+.|++|.. +.| .+..+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~--------------------~~~----------~~~~~~~~~ 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR--------------------GYF----------FDTKDLIFR 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC--------------------CCE----------EEHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe--------------------EEE----------EEHHHHHHH
Confidence 45677899999999999999999999999887655421 111 123333221
Q ss_pred hHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC-CCCHHHH
Q 016804 191 LLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA-GLDPIAS 269 (382)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta-gLD~~~~ 269 (382)
. ......-.. + .+...+. +|++|+||||++ ++|+..+
T Consensus 82 ~----------------~~~~~~~~~----------------~--~~~~~~~--------~~~llilDE~~~~~~~~~~~ 119 (180)
T 3ec2_A 82 L----------------KHLMDEGKD----------------T--KFLKTVL--------NSPVLVLDDLGSERLSDWQR 119 (180)
T ss_dssp H----------------HHHHHHTCC----------------S--HHHHHHH--------TCSEEEEETCSSSCCCHHHH
T ss_pred H----------------HHHhcCchH----------------H--HHHHHhc--------CCCEEEEeCCCCCcCCHHHH
Confidence 1 011110000 0 1122232 499999999995 9999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 270 ~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
..+.+++.+..+++ .++|++||...
T Consensus 120 ~~l~~ll~~~~~~~----------~~ii~tsn~~~ 144 (180)
T 3ec2_A 120 ELISYIITYRYNNL----------KSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHHHHTT----------CEEEEECCCCS
T ss_pred HHHHHHHHHHHHcC----------CCEEEEcCCCh
Confidence 99999999987766 48999999764
No 136
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.53 E-value=1.1e-14 Score=144.60 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=62.7
Q ss_pred CCCCCCChHHHHHH------HHHHHHhcCCCCCCCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 016804 222 RLPSELSGGMKKRV------ALARSIIFDNTKESVE-PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (382)
Q Consensus 222 ~~~~~LSGGqrQRV------aIArAL~~~~~~~a~~-P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~ 294 (382)
+++..||||||||+ ++||+|+. + |++|||||||++||+..+..+.+.|.++.+. .
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~-------~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-----------~ 337 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIG-------NRVECIILDEPTVYLDENRRAKLAEIFRKVKSI-----------P 337 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHS-------SCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSC-----------S
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhc-------CCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccC-----------C
Confidence 45679999999988 56788885 7 9999999999999999999999999987432 3
Q ss_pred EEEEEccCHHHHHHhhchh
Q 016804 295 SYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 295 tiIivTHdl~~~~~~aDrv 313 (382)
+||++||+.+ +..+||++
T Consensus 338 ~vi~~th~~~-~~~~~d~~ 355 (371)
T 3auy_A 338 QMIIITHHRE-LEDVADVI 355 (371)
T ss_dssp EEEEEESCGG-GGGGCSEE
T ss_pred eEEEEEChHH-HHhhCCEE
Confidence 8999999986 56788877
No 137
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.51 E-value=3.6e-18 Score=167.10 Aligned_cols=179 Identities=16% Similarity=0.241 Sum_probs=120.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCEECCCCCC
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHG-------EAVGIIGPSGTGKSTILKIIAGLL----APDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~G-------e~vaLiGpNGaGKSTLLklI~Gl~----~p~sG~I~i~G~~i~~~~~ 160 (382)
++.+++++.||...+++++++.+.+| +.++|+||||+|||||+++|+|.+ .+++|.+..++.++...
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~-- 96 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI-- 96 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH--
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH--
Confidence 45667777888888999999999887 899999999999999999999998 77888877766543210
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCC----HHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHH
Q 016804 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR----DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~----~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
.....+..|.|++|...+++ ++.|++...+... ... .....+.+...++.+++.. ..+.+..||+|+|||+.
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESCGGGSCHHHHTTCS
T ss_pred HHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcC
Confidence 00112335999999887775 7888885433221 111 1122334555566677755 67788999999999974
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
++ .+||+....++.++|++..+..+ ++|+.+.+..++++.
T Consensus 173 l~-----------------------~~Ld~~~~~~l~~iL~~~~~~~~--------------~~~~~~~~~~ia~~~ 212 (334)
T 1in4_A 173 II-----------------------LELDFYTVKELKEIIKRAASLMD--------------VEIEDAAAEMIAKRS 212 (334)
T ss_dssp EE-----------------------EECCCCCHHHHHHHHHHHHHHTT--------------CCBCHHHHHHHHHTS
T ss_pred ce-----------------------eeCCCCCHHHHHHHHHHHHHHcC--------------CCcCHHHHHHHHHhc
Confidence 32 45667778888999988876421 257777666666653
No 138
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.50 E-value=2e-17 Score=171.72 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=110.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
..+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|+++|.+-.... ....++++.|........|
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~-----~~~~v~~~~r~~~~~~~~~ 321 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY-----HENWIAEVTRTGMGEGEID 321 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC-----CSSEEEEECBCCSSSCCBC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC-----CCCeEEEEeecccccCCcC
Confidence 35789999999999999999999999999999999999999999999986421111 1124666666543222234
Q ss_pred HHHHHHhhHhhcC------CCCHHHHHHH------------------HHHHHHHcC-----Ccc----ccc---CCCCCC
Q 016804 184 VRENVGFLLYENS------KMRDEQISEL------------------VKENLAAVG-----LKG----VED---RLPSEL 227 (382)
Q Consensus 184 V~eni~~~~~~~~------~~~~~~~~~~------------------v~~~L~~~g-----L~~----~~~---~~~~~L 227 (382)
..+++...++... .....+.... +.++++++. +.. ..+ .....+
T Consensus 322 ~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~ 401 (511)
T 2oap_1 322 MYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWV 401 (511)
T ss_dssp HHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEE
T ss_pred HHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEE
Confidence 4444433322110 0111111110 122233322 211 111 223457
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE--EccCHHH
Q 016804 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV--VTHQHST 305 (382)
Q Consensus 228 SGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIi--vTHdl~~ 305 (382)
|+||+||+++| ++ | |+|||+.....+.+.|.++.+++ .|+++ +||++++
T Consensus 402 s~G~~~R~~~a-----------------i~-E-~~GlDp~~~~~~~~~l~~~~~~~----------~tii~~~~sH~l~e 452 (511)
T 2oap_1 402 RGNTRLRRTKE-----------------VN-E-ILGIDPVDKNLLVNQFVKWDPKE----------DKHIEVSMPKKLEK 452 (511)
T ss_dssp SSSCEEEEEEE-----------------EE-E-EEECCSSSSCCEEEEEEEEETTT----------TEEEECSCCTHHHH
T ss_pred eCCCceEEEEE-----------------EE-E-EcCcccCCCeEEEEEeEEEcccC----------CEEEEcccHHHHHH
Confidence 99998886542 11 6 99999988877777777775554 37775 9999999
Q ss_pred HHHhhch
Q 016804 306 IRRAVDR 312 (382)
Q Consensus 306 ~~~~aDr 312 (382)
+.+.|+.
T Consensus 453 i~~~~g~ 459 (511)
T 2oap_1 453 MADFLGV 459 (511)
T ss_dssp HHHHHTS
T ss_pred HHHHcCC
Confidence 9988763
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.1e-14 Score=141.24 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=77.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK 197 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G-l~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~ 197 (382)
.+.|.||||+|||||+++|+| ++.|+.|.+.++|.+.... . ..+..+++++|...+.-..+ +. ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~--~~--------~~ 103 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA---S-NRKLELNVVSSPYHLEITPS--DM--------GN 103 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------------CCEECSSEEEECCC--------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc---c-cccceeeeecccceEEecHh--hc--------CC
Confidence 389999999999999999999 8999999999999765321 1 11335889998765421111 00 00
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 016804 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277 (382)
Q Consensus 198 ~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~ 277 (382)
......++.+.++.+..++..+. +||| +.. +|+++|+|||++ ||+.++..+.+.|.
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~-------~~~vlilDE~~~-L~~~~~~~L~~~le 159 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDFQD-----SKDG-----------LAH-------RYKCVIINEANS-LTKDAQAALRRTME 159 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC-----------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccc-----cccc-----------cCC-------CCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence 11112333333333333333222 5676 554 699999999999 99999999999988
Q ss_pred HHHHcCCCCCCCCCCceEEEEEccCHHH
Q 016804 278 SVHKKGENGLANPGNIASYVVVTHQHST 305 (382)
Q Consensus 278 ~l~~~g~~~~~~~~~~~tiIivTHdl~~ 305 (382)
+... + .++|++||+.+.
T Consensus 160 ~~~~-~----------~~~Il~t~~~~~ 176 (354)
T 1sxj_E 160 KYSK-N----------IRLIMVCDSMSP 176 (354)
T ss_dssp HSTT-T----------EEEEEEESCSCS
T ss_pred hhcC-C----------CEEEEEeCCHHH
Confidence 7643 2 589999998753
No 140
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.49 E-value=4.7e-15 Score=150.31 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=99.2
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
-++++|+++.|+.++|+|+|||||||||++|+|..+ .+.+.+...+ ...+|+|+++.. ..+++.|
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-------~p~~G~V~~~~~--~~~~l~D 211 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-------SPNLGVVEVSEE--ERFTLAD 211 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-------CCEEEEEECSSS--CEEEEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-------cceeeEEEecCc--ceEEEEe
Confidence 479999999999999999999999999999999843 2333322211 113555555420 0011111
Q ss_pred HHHhh--HhhcCCCCHHHHH--HHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 187 NVGFL--LYENSKMRDEQIS--ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 187 ni~~~--~~~~~~~~~~~~~--~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
+..+. ......+.....+ +++..++..+++. ++++.+||+||+||+++|++|+. +|.+|++ +
T Consensus 212 tpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~-------~P~ILVl----N 277 (416)
T 1udx_A 212 IPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLR-------RPSLVAL----N 277 (416)
T ss_dssp CCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHH-------SCEEEEE----E
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhc-------CCEEEEE----E
Confidence 11100 0001111111100 1112223333443 45677899999999999999987 5999999 9
Q ss_pred CCCHHHHHHHHHHHHH-HHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 263 GLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 263 gLD~~~~~~l~~lL~~-l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
.+|+... ...+.+.+ +.+.+. ..+.+++|.-+-+..+.+.+
T Consensus 278 KlDl~~~-~~~~~l~~~l~~~g~---------~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 278 KVDLLEE-EAVKALADALAREGL---------AVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CCTTSCH-HHHHHHHHHHHTTTS---------CEEECCTTTCTTHHHHHHHH
T ss_pred CCChhhH-HHHHHHHHHHHhcCC---------eEEEEECCCccCHHHHHHHH
Confidence 9999876 44444444 433341 23455556666566666655
No 141
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.48 E-value=7.7e-16 Score=148.92 Aligned_cols=127 Identities=16% Similarity=0.141 Sum_probs=87.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH--
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL-- 192 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~-- 192 (382)
.++.++||+||+|||||||.+.|++++.+. | . . ...+.+|+|+..+++. ++++|+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~---------~--~~~~~iv~~D~f~~~~-~~~~~l~~~~~~ 89 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G---------G--EKSIGYASIDDFYLTH-EDQLKLNEQFKN 89 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G---------G--GSCEEEEEGGGGBCCH-HHHHHHHHHTTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C---------C--CceEEEeccccccCCh-HHHHHHhccccc
Confidence 468899999999999999999999999764 2 0 0 1135666999998874 8999998752
Q ss_pred ---hhcCCCCHHHHHHHHHHHHHHcCCc--------ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 193 ---YENSKMRDEQISELVKENLAAVGLK--------GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 193 ---~~~~~~~~~~~~~~v~~~L~~~gL~--------~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
....+.......+.+.+.++.+.-. -....+...+||||+||+++|++... +|+|||+||||
T Consensus 90 ~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-------~~~IlIlEG~~ 162 (290)
T 1odf_A 90 NKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-------PVDIFILEGWF 162 (290)
T ss_dssp CGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-------SCSEEEEEESS
T ss_pred cchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-------CCCEEEEeCcc
Confidence 1111111111122344555555332 12345567899999999999844432 39999999999
Q ss_pred CCCCHH
Q 016804 262 AGLDPI 267 (382)
Q Consensus 262 agLD~~ 267 (382)
+++|+.
T Consensus 163 ~~ld~~ 168 (290)
T 1odf_A 163 LGFNPI 168 (290)
T ss_dssp TTCCCC
T ss_pred ccCCcc
Confidence 999985
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.47 E-value=2.2e-14 Score=125.35 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=75.3
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG--~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
+|+++ +|+.++|+||||||||||+++|++...+ +| .+++++.++ ...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~-----------------------~~~-- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM-----------------------PLT-- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS-----------------------CCC--
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh-----------------------hHH--
Confidence 45555 8999999999999999999999999876 46 444433211 000
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag 263 (382)
+++. +|++|++|||++
T Consensus 79 --------------------------------------------------------~~~~-------~~~lLilDE~~~- 94 (149)
T 2kjq_A 79 --------------------------------------------------------DAAF-------EAEYLAVDQVEK- 94 (149)
T ss_dssp --------------------------------------------------------GGGG-------GCSEEEEESTTC-
T ss_pred --------------------------------------------------------HHHh-------CCCEEEEeCccc-
Confidence 2243 599999999998
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE-EEEEccC-HHHH---HHhhchh
Q 016804 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIAS-YVVVTHQ-HSTI---RRAVDRL 313 (382)
Q Consensus 264 LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~t-iIivTHd-l~~~---~~~aDrv 313 (382)
+|...+..+++++.++.++| .+ +|++||. .+++ .++++|+
T Consensus 95 ~~~~~~~~l~~li~~~~~~g----------~~~iiits~~~p~~l~~~~~L~SRl 139 (149)
T 2kjq_A 95 LGNEEQALLFSIFNRFRNSG----------KGFLLLGSEYTPQQLVIREDLRTRM 139 (149)
T ss_dssp CCSHHHHHHHHHHHHHHHHT----------CCEEEEEESSCTTTSSCCHHHHHHG
T ss_pred cChHHHHHHHHHHHHHHHcC----------CcEEEEECCCCHHHccccHHHHHHH
Confidence 66666899999999998876 36 8888884 3323 5666666
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.46 E-value=1.1e-16 Score=155.17 Aligned_cols=93 Identities=23% Similarity=0.351 Sum_probs=79.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHHcCCC--CCccEEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKI-------------------RHGEAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVY 149 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i-------------------~~Ge~vaLiGpNGaGKSTLLklI~Gl~~--p~sG~I~ 149 (382)
+|+++||++.| .++++++||.+ .+|+++||+||||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 58899999999 47899999988 8999999999999999999999999998 9999999
Q ss_pred E---CCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 150 I---RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 150 i---~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
+ +|... ..... ..+|++ |+..+++.+|+.+|+.+..
T Consensus 115 vi~~d~~~~----~~~~~--~~~~~v-q~~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 115 LITTDGFLH----PNQVL--KERGLM-KKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp EEEGGGGBC----CHHHH--HHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred EEecCCccC----cHHHH--HhCCEe-ecCCCCCCccHHHHHHHHH
Confidence 9 88653 12221 247888 8888888899999998754
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.45 E-value=1.5e-14 Score=145.96 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=79.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHH--HHHcCCCCCcc-----EEEECCEECCCCCChhhhc--cceEEEEecCCCCCCCCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILK--IIAGLLAPDKG-----EVYIRGRKRAGLISDEEIS--GLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLk--lI~Gl~~p~sG-----~I~i~G~~i~~~~~~~~~~--~~~Ig~V~Q~~~l~~~lT 183 (382)
-|++|++++|+||||||||||++ ++.++.+++.| .++|++++.. ...... ..++|+.+| +
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~---~~~rl~~~a~~~gl~~~--------~ 242 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF---RPVRLVSIAQRFGLDPD--------D 242 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---CHHHHHHHHHHTTCCHH--------H
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc---CHHHHHHHHHHcCCChH--------h
Confidence 58999999999999999999999 45677777555 7777775421 111100 012333222 3
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCCh-HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG-GMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSG-GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
+.+|+.+.. ..+. .+.+.+.-++.++.. .+|+++++|||++
T Consensus 243 vleni~~~~---------------------------------~~~~~~~~~~l~~~~~~l~~-----~~~~llVIDs~t~ 284 (400)
T 3lda_A 243 ALNNVAYAR---------------------------------AYNADHQLRLLDAAAQMMSE-----SRFSLIVVDSVMA 284 (400)
T ss_dssp HHHTEEEEE---------------------------------CCSHHHHHHHHHHHHHHHHH-----SCEEEEEEETGGG
T ss_pred HhhcEEEec---------------------------------cCChHHHHHHHHHHHHHHHh-----cCCceEEecchhh
Confidence 333332210 0111 122333333344331 3699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCH
Q 016804 263 GLDPIAS------------TVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 263 gLD~~~~------------~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl 303 (382)
.+|+... .++++.|++++++ + +|||+|+|..
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g----------itVIlv~Hv~ 328 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFG----------VAVVVTNQVV 328 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHC----------CEEEEEEEC-
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcC----------CEEEEEEeec
Confidence 9997543 5677888888766 4 6999999984
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.45 E-value=6.2e-18 Score=161.80 Aligned_cols=148 Identities=18% Similarity=0.228 Sum_probs=104.7
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCC-CCC
Q 016804 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA-ALF 179 (382)
Q Consensus 101 yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~-~l~ 179 (382)
|+...+++++++++++| ++|+||||||||||+|+|+|...+ |.|.++|.++....... ...+++++||.. ..+
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~--~~~~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGE--SERAVRQVFQRAKNSA 103 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHH--HHHHHHHHHHHHHHTC
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhH--HHHHHHHHHHHHHhcC
Confidence 34456899999999999 999999999999999999999887 79999997764322121 122478899985 556
Q ss_pred CCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeC
Q 016804 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (382)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDE 259 (382)
+.+++.|++.+..... ... ... .+....++++.+|||||+||+.|++|+.+ +|++| ||
T Consensus 104 p~i~~~Deid~~~~~r---~~~----~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn-------~p~~L--D~ 161 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRR---SDR----ETG------ASVRVVNQLLTEMDGLEARQQVFIMAATN-------RPDII--DP 161 (274)
T ss_dssp SEEEEEETCTTTCC----------------------CTTHHHHHHHHHHTCCSTTCEEEEEEES-------CGGGS--CH
T ss_pred CCeEeeehhhhhhccc---CCC----cch------HHHHHHHHHHHhhhcccccCCEEEEeecC-------ChhhC--CH
Confidence 6677788876532110 000 000 13345567788999999999999999986 58875 99
Q ss_pred CCC------------CCCHHHHHHHHHHH
Q 016804 260 PTA------------GLDPIASTVVEDLI 276 (382)
Q Consensus 260 Pta------------gLD~~~~~~l~~lL 276 (382)
|+. --|...+.++++.+
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 864 23666666555543
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.44 E-value=3e-15 Score=146.21 Aligned_cols=119 Identities=23% Similarity=0.252 Sum_probs=70.5
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEECCCCCChhhhccceEEEEecCCCCCC----CCCH
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAALFD----SLTV 184 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i---~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~----~lTV 184 (382)
+++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+...... ...+..+||++|.|.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~---~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV---ELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC---CEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH---HHhhcCCEEEecCCCccccccccCCH
Confidence 567789999999999999999999999999999999999 887754321 111112699999997754 6789
Q ss_pred HHHHH--hhH-hhc------CC-CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHH
Q 016804 185 RENVG--FLL-YEN------SK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR 234 (382)
Q Consensus 185 ~eni~--~~~-~~~------~~-~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQR 234 (382)
||+. |+- ... .+ ....+....+.++++.++|.+...+....|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 9983 331 101 11 1222234568889999999875555555667778773
No 147
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.42 E-value=8.7e-16 Score=139.89 Aligned_cols=139 Identities=20% Similarity=0.195 Sum_probs=78.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~ 193 (382)
.++|++++|+||||||||||+++|+|+++|+ | ..+|+|+++...++. +..+|+.....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------------------~~~g~v~~d~~~~~~-~~~~~~~~~~~ 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------------------LPAEVVPMDGFHLDN-RLLEPRGLLPR 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------------------CCEEEEESGGGBCCH-HHHGGGTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------------------CceEEEecCCCcCCH-HHHHHhccccc
Confidence 4789999999999999999999999999875 3 024555555443331 22222211000
Q ss_pred -hc-CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH-HHHhcCCCCCCCCCcEEEEeCCC---------
Q 016804 194 -EN-SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA-RSIIFDNTKESVEPEVLLYDEPT--------- 261 (382)
Q Consensus 194 -~~-~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA-rAL~~~~~~~a~~P~iLLLDEPt--------- 261 (382)
.. .........+.+..+-..-.+.-........+|+||+||+++| ++++. ++.++++|||.
T Consensus 77 ~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~-------eg~~~l~de~~~~~l~~~~d 149 (208)
T 3c8u_A 77 KGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAII-------EGNYLLFDAPGWRDLTAIWD 149 (208)
T ss_dssp TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEE-------EESSTTBCSTTGGGGGGTCS
T ss_pred CCCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEE-------CCceeccCCchhHHHHHhcC
Confidence 00 0011122222222211110111111223345799999999998 88876 58888899984
Q ss_pred --CCCCHHHHHHHHHHHHHHHH
Q 016804 262 --AGLDPIASTVVEDLIRSVHK 281 (382)
Q Consensus 262 --agLD~~~~~~l~~lL~~l~~ 281 (382)
.-+|......+.+.+++..+
T Consensus 150 ~~i~vd~~~~~~~~R~~~R~~~ 171 (208)
T 3c8u_A 150 VSIRLEVPMADLEARLVQRWLD 171 (208)
T ss_dssp EEEEECCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHh
Confidence 22455555555555555433
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.40 E-value=8.8e-17 Score=146.08 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=88.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA-------------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-------------p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~ 181 (382)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.+.... ......+ .+.|+..++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~-~~~~~~~----~i~~~~~l~~- 73 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFV-TREMMQR----DIAAGDFIEH- 73 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEEC-CHHHHHH----HHHHTCEEEE-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEc-cHHHHHH----HHHcCCCEee-
Confidence 5799999999999999999999999986 66776 356543221 1111111 1245554443
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH---HHHH-HHhcCCCCCCCCCcEEEE
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV---ALAR-SIIFDNTKESVEPEVLLY 257 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV---aIAr-AL~~~~~~~a~~P~iLLL 257 (382)
.++.+|+ ++ .+.++ +.++++..... ..+..+ .|-++.. ..|| +++. +|++++|
T Consensus 74 ~~~~~n~-~g------~~~~~----i~~~~~~~~~~-~~~~~~----~g~~~~~~~~~~~~~~~l~-------~p~~~il 130 (198)
T 1lvg_A 74 AEFSGNL-YG------TSKEA----VRAVQAMNRIC-VLDVDL----QGVRSIKKTDLCPIYIFVQ-------PPSLDVL 130 (198)
T ss_dssp EEETTEE-EE------EEHHH----HHHHHHTTCEE-EEECCH----HHHHHHTTSSCCCEEEEEE-------CSCHHHH
T ss_pred eeecCcc-CC------CCHHH----HHHHHHcCCcE-EEECCH----HHHHHHHhcCCCcEEEEEe-------CCCHHHH
Confidence 3455554 22 12222 33444431111 111100 1111111 1456 5665 5888899
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCCCCC-CCCCceEEEEEccCHHHHHHh
Q 016804 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLA-NPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 258 DEPtagLD~~~~~~l~~lL~~l~~~g~~~~~-~~~~~~tiIivTHdl~~~~~~ 309 (382)
||+|+++|..+.+.+.+.|.++.++-. .+ .+ ...-.|++-++++.+..-
T Consensus 131 de~~~~~d~~~e~~i~~~l~~~~~~~~--~a~~~-~~~D~iivnd~le~a~~~ 180 (198)
T 1lvg_A 131 EQRLRLRNTETEESLAKRLAAARTDME--SSKEP-GLFDLVIINDDLDKAYAT 180 (198)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTT--GGGST-TTCSEEEECSSHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH--Hhhcc-CCceEEEECCCHHHHHHH
Confidence 999999999999999988887754310 00 00 002457777787766544
No 149
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.37 E-value=2.8e-16 Score=158.26 Aligned_cols=158 Identities=15% Similarity=0.204 Sum_probs=107.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc------------CCCCCccEEEECCEECCCCCChhhhccceE---EEEecCCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAG------------LLAPDKGEVYIRGRKRAGLISDEEISGLRI---GLVFQSAA 177 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~G------------l~~p~sG~I~i~G~~i~~~~~~~~~~~~~I---g~V~Q~~~ 177 (382)
++++|+.++|+|+||||||||+|+|+| ...|++|.|.+.|..+..+ ......++.+ .++.+.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l-~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWL-CEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHH-HHHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhh-hhhcccccccCcceEEEeccc
Confidence 467899999999999999999999999 6779999999988432110 0000011123 47788888
Q ss_pred CCCCCCHHHHH--HhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC--c
Q 016804 178 LFDSLTVRENV--GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP--E 253 (382)
Q Consensus 178 l~~~lTV~eni--~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P--~ 253 (382)
+++..+..+++ .|.... +.. ..++..+++. .+.....+||+. +| +
T Consensus 95 l~~~~s~~e~L~~~fl~~i-r~~---------d~il~Vvd~~--~d~~i~~v~~~~-------------------dP~~d 143 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHV-RAV---------DAIYQVVRAF--DDAEIIHVEGDV-------------------DPIRD 143 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHH-TTC---------SEEEEEEECC--CTTCSSCCSSSS-------------------CHHHH
T ss_pred cccCCcHHHHHHHHHHHHH-HHH---------HHHHHHHhcc--ccceeeeecccc-------------------Ccchh
Confidence 88877766655 221111 100 0111122222 133444456542 48 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSV-HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l-~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
++++|||+.++|+......++.+..+ .+.| .|++ +|++..+..+||++.
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g----------~ti~--sh~~~~~~~l~~~i~ 193 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGA----------NTLE--MKAKKEEQAIIEKVY 193 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS----------CSSS--HHHHHHHHHHHHHHH
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHhcC----------Cccc--cccHHHHHHHHHHHH
Confidence 99999999999999999999998887 5544 3543 999999999999994
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.28 E-value=1.3e-12 Score=126.41 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=95.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
+.++++++.|+... ++++|+ +|++++++|+||+||||+++.|++++.+..|+|.+.+.|... ...
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~---~~~-------- 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR---PAA-------- 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC---HHH--------
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc---HhH--------
Confidence 45678888887543 788998 999999999999999999999999999999999998866421 100
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
. +.+ ..+.+..++.-..... ..+-.+.+|.+|+++... +
T Consensus 142 ~-------------~ql-------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~-------~ 180 (295)
T 1ls1_A 142 R-------------EQL-------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLE-------A 180 (295)
T ss_dssp H-------------HHH-------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHH-------T
T ss_pred H-------------HHH-------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhC-------C
Confidence 0 000 0012233443321110 123445678999998765 5
Q ss_pred CcEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 016804 252 PEVLLYDEP-TAGLDPIASTVVEDLIRSVH 280 (382)
Q Consensus 252 P~iLLLDEP-tagLD~~~~~~l~~lL~~l~ 280 (382)
++++|+||| +.++|.....++.++.+.+.
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 999999999 99999988888888777663
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.26 E-value=3.1e-12 Score=124.69 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=83.3
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHH
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni 188 (382)
.++++.++|++++|+|||||||||+++.|++++.++.|+|.+.+.|... .+ ..+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r-----------~~-------------a~e-- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-----------AA-------------AIE-- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-----------HH-------------HHH--
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc-----------HH-------------HHH--
Confidence 3566678999999999999999999999999999988899988765310 00 011
Q ss_pred HhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH---HHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV---ALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV---aIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
.+..+++.+++.. ...+|+|+.|++ +|++|+.. +|+++|+|||..
T Consensus 150 -----------------qL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~-------~~dvvIiDtpg~--- 197 (306)
T 1vma_A 150 -----------------QLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALAR-------NKDVVIIDTAGR--- 197 (306)
T ss_dssp -----------------HHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHT-------TCSEEEEEECCC---
T ss_pred -----------------HHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhc-------CCCEEEEECCCc---
Confidence 1233455666653 235789999999 99999986 699999999974
Q ss_pred HHHHHHHHHHHHHHH
Q 016804 266 PIASTVVEDLIRSVH 280 (382)
Q Consensus 266 ~~~~~~l~~lL~~l~ 280 (382)
......+++.|+++.
T Consensus 198 ~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 198 LHTKKNLMEELRKVH 212 (306)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 334455555555554
No 152
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.25 E-value=2.1e-12 Score=133.13 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=53.4
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCC
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~ 157 (382)
+.+++.. +..+|+++||+|++ |+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 9 l~~l~~~--~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 9 FRSLTLI--NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp EEEEEEE--EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred eeEEEEe--ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 4445432 25689999999999 9999999999999999999999999999999999987653
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.24 E-value=1.7e-11 Score=118.74 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=86.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhh
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE 194 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~ 194 (382)
.+|++++|+|||||||||+++.|++.+.+++| .+|.++.+++. ..++.+++...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--------------------~~V~lv~~D~~---r~~a~eqL~~~--- 156 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--------------------KKIAFITTDTY---RIAAVEQLKTY--- 156 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------------------CCEEEEECCCS---STTHHHHHHHH---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------------------CEEEEEecCcc---cchHHHHHHHH---
Confidence 47999999999999999999999999988777 13667777663 23555555432
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 016804 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274 (382)
Q Consensus 195 ~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~ 274 (382)
.+..|+..... .+ +..-+.+|+++ . +|+++|+| |+|+|+.....+.+
T Consensus 157 ----------------~~~~gl~~~~~-----~~-~~~l~~al~~~--~-------~~dlvIiD--T~G~~~~~~~~~~e 203 (296)
T 2px0_A 157 ----------------AELLQAPLEVC-----YT-KEEFQQAKELF--S-------EYDHVFVD--TAGRNFKDPQYIDE 203 (296)
T ss_dssp ----------------HTTTTCCCCBC-----SS-HHHHHHHHHHG--G-------GSSEEEEE--CCCCCTTSHHHHHH
T ss_pred ----------------HHhcCCCeEec-----CC-HHHHHHHHHHh--c-------CCCEEEEe--CCCCChhhHHHHHH
Confidence 12233322111 12 23446666653 4 59999999 99999876655555
Q ss_pred HHHHHHHcCCCCCCCCCCceEEEEE--ccCHHHHHHhhchh
Q 016804 275 LIRSVHKKGENGLANPGNIASYVVV--THQHSTIRRAVDRL 313 (382)
Q Consensus 275 lL~~l~~~g~~~~~~~~~~~tiIiv--THdl~~~~~~aDrv 313 (382)
+.+-+.... +. .+++++ ||+.+.+.++++++
T Consensus 204 l~~~l~~~~------~~--~~~lVl~at~~~~~~~~~~~~~ 236 (296)
T 2px0_A 204 LKETIPFES------SI--QSFLVLSATAKYEDMKHIVKRF 236 (296)
T ss_dssp HHHHSCCCT------TE--EEEEEEETTBCHHHHHHHTTTT
T ss_pred HHHHHhhcC------CC--eEEEEEECCCCHHHHHHHHHHH
Confidence 443332100 01 234444 99999999999987
No 154
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.23 E-value=2.5e-13 Score=125.16 Aligned_cols=183 Identities=13% Similarity=0.070 Sum_probs=74.5
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~-Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
.+..+++||++++|++++|+||||||||||+++|+ |++++. +++.+........ .....++|.|+++..|..+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~ 87 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARK-GEKEGKDYYFVDREEFLRL 87 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCT-TCCBTTTBEECCHHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCc-cccCCCeEEEecHHHhhhh
Confidence 45789999999999999999999999999999999 998652 2222221111000 0001244677766555444
Q ss_pred CHHHHHHhhHhh---cCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCCh--HHHHHH-HHHH-HHhcCCCCCCCCCcEE
Q 016804 183 TVRENVGFLLYE---NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG--GMKKRV-ALAR-SIIFDNTKESVEPEVL 255 (382)
Q Consensus 183 TV~eni~~~~~~---~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSG--GqrQRV-aIAr-AL~~~~~~~a~~P~iL 255 (382)
+..+++...... ..+...+. +.++++.-. .-..+- .+.| ..++++ .-++ .++. .|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~-~vild~---~~~g~~~~~~~~~~~~~~v~v~-------~~~~~ 152 (231)
T 3lnc_A 88 CSNGEIIEHAEVFGNFYGVPRKN----LEDNVDKGV-STLLVI---DWQGAFKFMEMMREHVVSIFIM-------PPSME 152 (231)
T ss_dssp HHTTCEEEEEEETTEEEEEECTT----HHHHHHHTC-EEEEEC---CHHHHHHHHHHSGGGEEEEEEE-------CSCHH
T ss_pred hhcCceehhhhhccccCCCCHHH----HHHHHHcCC-eEEEEc---CHHHHHHHHHhcCCCeEEEEEE-------CCcHH
Confidence 443333211000 00111111 223333311 111111 0111 113332 1111 2232 36777
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 256 LYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 256 LLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+++|++.+.|..+...+.+.|.+...+ .+. ....+++++|+++++.+.++++
T Consensus 153 ~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~------~~~d~vI~n~~~e~~~~~l~~~ 205 (231)
T 3lnc_A 153 ELRRRLCGRRADDSEVVEARLKGAAFEISHC------EAYDYVIVNEDIEETADRISNI 205 (231)
T ss_dssp HHHHC--------------CHHHHHHHHTTG------GGSSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh------cCCeEEEECcCHHHHHHHHHHH
Confidence 788999999988887777766654322 100 0146889999999888777766
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.23 E-value=3.9e-16 Score=148.12 Aligned_cols=134 Identities=13% Similarity=0.188 Sum_probs=93.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
..+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........ ..+++
T Consensus 49 ~~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~--~~~i~ 122 (278)
T 1iy2_A 49 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVG--AARVR 122 (278)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHH--HHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHH--HHHHH
Confidence 345677888887778999999999999 99999999999999999999985 7999998876432111111 12477
Q ss_pred EEecCCC-CCCCCCHHHHHHhhHhhcC-C--CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 171 LVFQSAA-LFDSLTVRENVGFLLYENS-K--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 171 ~V~Q~~~-l~~~lTV~eni~~~~~~~~-~--~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
++||... .++.+++.|++........ . ...++..+.+.++ +.+|||||+||+.+++|+.+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEES
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecC
Confidence 8898864 5667788888843221110 0 0112222222222 34589999999999999986
No 156
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.22 E-value=3.4e-16 Score=146.05 Aligned_cols=144 Identities=13% Similarity=0.214 Sum_probs=98.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
..+++++.+.|+...+++++++++++| +.|+||||||||||+++|++... .|.|.++|.++........ ..+++
T Consensus 25 ~~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~--~~~i~ 98 (254)
T 1ixz_A 25 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVG--AARVR 98 (254)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHH--HHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHH--HHHHH
Confidence 456778888887778999999999999 99999999999999999999885 7899998866432111111 12467
Q ss_pred EEecCCC-CCCCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 171 LVFQSAA-LFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 171 ~V~Q~~~-l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
++||... .++.+++.|++......... ...++..+.+.++ ..+|||||+||+.+++|+.+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~l~g~~~~~~~i~~a~t~--- 162 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATN--- 162 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH-------------HHHHHTCCTTCCEEEEEEES---
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEccC---
Confidence 8888754 56667888888432211110 0112222233333 23578999999999999986
Q ss_pred CCCCCCcEEEEeCCCC
Q 016804 247 KESVEPEVLLYDEPTA 262 (382)
Q Consensus 247 ~~a~~P~iLLLDEPta 262 (382)
+|++ +|++.-
T Consensus 163 ----~p~~--ld~~l~ 172 (254)
T 1ixz_A 163 ----RPDI--LDPALL 172 (254)
T ss_dssp ----CGGG--SCGGGG
T ss_pred ----Cchh--CCHHHc
Confidence 4765 576653
No 157
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.21 E-value=4.4e-13 Score=120.05 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=54.3
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 016804 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (382)
Q Consensus 111 sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~ 190 (382)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+.......... ....++|+||++.+|+.+++.+|+.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPG--DQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTT--CCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchh--HhcCceEEeccHHHHHHHHhcCcEEe
Confidence 67888999999999999999999999999974 5888887654322111 12358999999988877777766544
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.21 E-value=2.1e-13 Score=141.53 Aligned_cols=194 Identities=18% Similarity=0.143 Sum_probs=120.3
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAG--LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G--l~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
.+++++.++..+.|.|++||||||+++.|.. ++.++.|++.+.+.|.... ...... .-|.++. +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~----el~~~~-----~lPhl~~--~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML----ELSVYE-----GIPHLLT--EVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS----GGGGGT-----TCTTBSS--SCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh----hhhhhc-----cCCcccc--eeec
Confidence 5778888999999999999999999999876 6677778888888775421 111000 0012211 1222
Q ss_pred HHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc---CCCCCCChHHHHHH----------HHHHHHhcCCCCCCCCCc
Q 016804 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVED---RLPSELSGGMKKRV----------ALARSIIFDNTKESVEPE 253 (382)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~---~~~~~LSGGqrQRV----------aIArAL~~~~~~~a~~P~ 253 (382)
|......... ....+++++. ++++.+|+.+... +....+|+||+||. ++|+++.. .|.
T Consensus 228 d~~~a~~~L~-~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~-------lP~ 298 (512)
T 2ius_A 228 DMKDAANALR-WCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKK-------EPY 298 (512)
T ss_dssp SHHHHHHHHH-HHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCC-------CCE
T ss_pred CHHHHHHHHH-HHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhcccccccc-------CCc
Confidence 2221111000 1234566664 6788888865432 23356899998763 34555543 587
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-------HHHHhhchhccccccccchhe
Q 016804 254 -VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-------TIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 254 -iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-------~~~~~aDrv~~~~~~~~~~~~ 325 (382)
++++||+++-+|. ....+.+.|.++.+.|.. -+.++|++||+.+ ...++.+|| .|+..-..|.-
T Consensus 299 ivlvIDE~~~ll~~-~~~~~~~~l~~Lar~gRa------~GI~LIlaTQrp~~dvl~~~i~~n~~~RI-~lrv~s~~dsr 370 (512)
T 2ius_A 299 IVVLVDEFADLMMT-VGKKVEELIARLAQKARA------AGIHLVLATQRPSVDVITGLIKANIPTRI-AFTVSSKIDSR 370 (512)
T ss_dssp EEEEEETHHHHHHH-HHHHHHHHHHHHHHHCGG------GTEEEEEEESCCCTTTSCHHHHHHCCEEE-EECCSSHHHHH
T ss_pred EEEEEeCHHHHHhh-hhHHHHHHHHHHHHHhhh------CCcEEEEEecCCccccccHHHHhhcCCeE-EEEcCCHHHHH
Confidence 8999999998884 346677888888665420 0168999999987 455677777 34444444555
Q ss_pred ehhcc
Q 016804 326 IILGA 330 (382)
Q Consensus 326 ~~~~~ 330 (382)
.|+|.
T Consensus 371 ~ilg~ 375 (512)
T 2ius_A 371 TILDQ 375 (512)
T ss_dssp HHHSS
T ss_pred HhcCC
Confidence 55554
No 159
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.19 E-value=5.5e-13 Score=124.84 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=51.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh------hhh
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD------EEI 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~------~~~ 164 (382)
.|+++|+...|+. +|++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++...... ...
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGG
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhH
Confidence 5889999876642 456666 89999999999999999999999999999999999886332111 111
Q ss_pred ccceEEEEecC
Q 016804 165 SGLRIGLVFQS 175 (382)
Q Consensus 165 ~~~~Ig~V~Q~ 175 (382)
.+..++|++|+
T Consensus 81 ~~~~i~~v~~~ 91 (227)
T 1qhl_A 81 LKAGVCYSMLD 91 (227)
T ss_dssp BCSSEEEEEEE
T ss_pred hhcCcEEEEEe
Confidence 23369999974
No 160
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.15 E-value=2.7e-12 Score=117.53 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=34.5
Q ss_pred eeEee-eEEEeCCcEEEEEcCCCccHHHHH-HHHHcCCCCCccEEEECCE
Q 016804 106 ILRGV-SFKIRHGEAVGIIGPSGTGKSTIL-KIIAGLLAPDKGEVYIRGR 153 (382)
Q Consensus 106 iL~~v-sl~i~~Ge~vaLiGpNGaGKSTLL-klI~Gl~~p~sG~I~i~G~ 153 (382)
.|+.+ .--+++|+++.|+||||||||||+ +++.+..+...+.+++++.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45555 456899999999999999999995 4555555554455555543
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.12 E-value=4.1e-13 Score=141.41 Aligned_cols=167 Identities=17% Similarity=0.128 Sum_probs=105.8
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEECCCCCChhhhccceEEEEe
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s-G~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
++++.-||...+++++++.+.+|+.+.|+||||||||||+++|++++++.. |.+.+++..... ....++++|
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-------~~p~i~~~p 110 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-------NMPRIKTVP 110 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-------TSCEEEEEE
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-------cCCcEEEEe
Confidence 445556788889999999999999999999999999999999999999988 888888764321 122588888
Q ss_pred cCC----------------------CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHH
Q 016804 174 QSA----------------------ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM 231 (382)
Q Consensus 174 Q~~----------------------~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGq 231 (382)
+.. ..+..+++.+|+........... ...+......+.+|.-+........+|+|+
T Consensus 111 ~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~--~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 111 ACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAP--FIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp TTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCC--EEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred cchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCC--EEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 753 11222333333321100000000 000000011223332222223336799999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~ 278 (382)
+|++..++.... ++.+|++||... |++..+..+.+.|.+
T Consensus 189 ~~~i~~g~~~~a-------~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 189 HERVEPGMIHRA-------HKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGGEECCHHHHT-------TTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccccCceeeec-------CCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999988888775 699999999988 899888888887764
No 162
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.12 E-value=5.9e-11 Score=120.78 Aligned_cols=180 Identities=11% Similarity=0.092 Sum_probs=111.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG-~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+. +......+-++... ..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~----s~~~l~~r~~~~~~-------~~ 258 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM----SAQQLVMRMLCAEG-------NI 258 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS----CHHHHHHHHHHHHH-------TC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC----CHHHHHHHHHHHHc-------CC
Confidence 3568888878999999999999999999999999987765444 455544321 11111110000000 00
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
.. +.+.. .....++ .+++.++++.++.....-..+..+|.+|.+ +.+|.++.. .+|+++++|+++.
T Consensus 259 ~~-~~l~~-----g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~-----~~~~livID~l~~ 324 (454)
T 2r6a_A 259 NA-QNLRT-----GKLTPED-WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQE-----SGLGMIVIDYLQL 324 (454)
T ss_dssp CH-HHHHT-----SCCCHHH-HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTT-----TCCCEEEEECGGG
T ss_pred CH-HHHhc-----CCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHH-----cCCCEEEEccHHH
Confidence 11 11111 1233333 334555666665544433345689999876 677888742 4799999999998
Q ss_pred CCCH--------HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcc---------C--HH--------HHHHhhchhcc
Q 016804 263 GLDP--------IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH---------Q--HS--------TIRRAVDRLCL 315 (382)
Q Consensus 263 gLD~--------~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTH---------d--l~--------~~~~~aDrv~~ 315 (382)
-.+. ....++.+.|+.++++.+ ++||+++| + .. .+...||.|++
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~---------i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~ 395 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELE---------VPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAF 395 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHT---------CCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEE
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhC---------CeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEE
Confidence 7742 334667777888876521 68999999 2 21 46778888865
Q ss_pred cc
Q 016804 316 FQ 317 (382)
Q Consensus 316 ~~ 317 (382)
|.
T Consensus 396 l~ 397 (454)
T 2r6a_A 396 LY 397 (454)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 163
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.08 E-value=6.5e-11 Score=117.13 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=25.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999888775443
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.04 E-value=7.6e-11 Score=105.05 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=33.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC-----------CccEEEECCEEC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAP-----------DKGEVYIRGRKR 155 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p-----------~sG~I~i~G~~i 155 (382)
.++|+|+||||||||++.++|...+ ++|+|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 5899999999999999999999876 589999999754
No 165
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.88 E-value=4.3e-11 Score=107.90 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=50.2
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHH
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni 188 (382)
+-.++.++|++++|+||||||||||+++|++.+ |.+.++|.++.. .....+..+|+++|++.+++.+++.+|+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS---PENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC---HHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc---HHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 334667899999999999999999999999987 899999876531 2111222467888876555555566655
Q ss_pred Hh
Q 016804 189 GF 190 (382)
Q Consensus 189 ~~ 190 (382)
..
T Consensus 94 ~~ 95 (200)
T 4eun_A 94 MD 95 (200)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.86 E-value=7.9e-10 Score=98.56 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 280 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~ 280 (382)
...|++|+. +|.++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~-------~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAE-------KNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHH-------HTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456899987 59999999 99999999999998887653
No 167
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.84 E-value=1.5e-10 Score=109.57 Aligned_cols=52 Identities=29% Similarity=0.517 Sum_probs=36.4
Q ss_pred ceEEEEeE-EEEe-CCeeeeEeeeEEEeC---CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 90 VLIDCRNV-YKSF-GEKHILRGVSFKIRH---GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 90 ~~I~~~nv-s~~y-g~~~iL~~vsl~i~~---Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++|+++|+ +|+| ++.++|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 9999 778899999999999 9999999999999999999999855
No 168
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.82 E-value=1e-09 Score=96.68 Aligned_cols=135 Identities=16% Similarity=0.077 Sum_probs=74.4
Q ss_pred EEEeEEEEeCCeeee--EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE--ECCCCCCh--hhhcc
Q 016804 93 DCRNVYKSFGEKHIL--RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR--KRAGLISD--EEISG 166 (382)
Q Consensus 93 ~~~nvs~~yg~~~iL--~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~--~i~~~~~~--~~~~~ 166 (382)
.++.|... +...+ +++++++.+| +++|+||||||||||+++|.+++.+..|...-.+. ++...... .....
T Consensus 3 ~i~~l~i~--nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (182)
T 3kta_A 3 YIEKLELK--GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKY 79 (182)
T ss_dssp EEEEEEEE--SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSC
T ss_pred eEEEEEEe--CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCce
Confidence 34444443 23456 7899999999 99999999999999999999999887765432221 11000000 00112
Q ss_pred ceEEEEecCCCC-CC----CCCHHHHHHh-hH--hhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH
Q 016804 167 LRIGLVFQSAAL-FD----SLTVRENVGF-LL--YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l-~~----~lTV~eni~~-~~--~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV 235 (382)
..|.++||++.- ++ .++|...+.- +. +...+ .....+.+.++++.+++... .+.-++.||.+++
T Consensus 80 ~~v~~~f~~~~~~~~~~~~~~~i~r~~~~~~~~~~~i~g--~~~~~~~~~~~l~~~~l~~~---~~~~~~qg~~~~l 151 (182)
T 3kta_A 80 AEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNG--RRATRSEILDILTAAMISPD---GYNIVLQGDITKF 151 (182)
T ss_dssp EEEEEEEECTTCCSSSSSSEEEEEEEECTTSCEEEEETT--EEECHHHHHHHHHHTTCCTT---CTTEECTTCTTHH
T ss_pred EEEEEEEeCCCcccccCCcEEEEEEEEEeCCcEEEEECC--eEcCHHHHHHHHHHcCCCCC---CCEEEEcccHHHH
Confidence 359999998642 11 1222221100 00 00001 01113457788888988642 1234566666554
No 169
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.82 E-value=3.2e-10 Score=106.45 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=55.1
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEE--------ECCEECCCCCChhhhccceEEEE
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEVY--------IRGRKRAGLISDEEISGLRIGLV 172 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~---Gl~~p~sG~I~--------i~G~~i~~~~~~~~~~~~~Ig~V 172 (382)
..++++.+ ++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++......... ..+++++
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~ 92 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPL-AAHLDVR 92 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHH-HHTCCEE
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHH-HHcCCEE
Confidence 34455544 789999999999999999999999 99999999999 899876432222222 2358899
Q ss_pred ecCCC-----CCCCCCHHHHH
Q 016804 173 FQSAA-----LFDSLTVRENV 188 (382)
Q Consensus 173 ~Q~~~-----l~~~lTV~eni 188 (382)
||... ++...++.+|+
T Consensus 93 ~~~~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 93 FVSQNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp EEEETTEEEEEETTEECTTGG
T ss_pred EecCCCCceEEECCeehhHHH
Confidence 97532 22334565665
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.80 E-value=4.7e-10 Score=111.57 Aligned_cols=144 Identities=17% Similarity=0.245 Sum_probs=87.0
Q ss_pred CCcE-EEEEcCCCccHHHHHHHHHcCCC-----------CCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 116 HGEA-VGIIGPSGTGKSTILKIIAGLLA-----------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 116 ~Ge~-vaLiGpNGaGKSTLLklI~Gl~~-----------p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
.|-. ++|+|++|||||||++.|+|... |+.|.|.++|.++.- .. ..|++.+.+. ..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-------~D-T~G~i~~lp~----~l 244 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-------VD-TVGFIRGIPP----QI 244 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-------EE-CCCBCSSCCG----GG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-------Ee-CCCchhcCCH----HH
Confidence 3444 99999999999999999999876 677999998865310 00 2455544322 11
Q ss_pred HHHH---HHhhH------hhcCCCC-H---HHHHHHHHHHHHHcCCcccc----cCCCCCCChHHHHHHHHH----HHH-
Q 016804 184 VREN---VGFLL------YENSKMR-D---EQISELVKENLAAVGLKGVE----DRLPSELSGGMKKRVALA----RSI- 241 (382)
Q Consensus 184 V~en---i~~~~------~~~~~~~-~---~~~~~~v~~~L~~~gL~~~~----~~~~~~LSGGqrQRVaIA----rAL- 241 (382)
+... +.... ....... . .+..+.+.++++.+++.+.. ..++..+|+|++||+.++ +++
T Consensus 245 ve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~ 324 (364)
T 2qtf_A 245 VDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY 324 (364)
T ss_dssp HHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc
Confidence 1111 11000 0011111 1 12223356677777765432 334567888899998887 555
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~ 282 (382)
.. +|++ +|+|++|.....++++.|.++...
T Consensus 325 ~~-------~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 325 SP-------IFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp SC-------EEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CC-------CCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 31 2444 899999999999999999887654
No 171
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.75 E-value=1.4e-11 Score=123.42 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=83.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC-CCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA-LFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~-l~~~l 182 (382)
..+|+++|+.+++|++++|+||||||||||+++|+|. .+|++..-. .. ... ....+|++||... +++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~---~~~--~~~~lg~~~q~~~~l~dd~ 225 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LP---LDR--LNFELGVAIDQFLVVFEDV 225 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SC---TTT--HHHHHGGGTTCSCEEETTC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--cc---chh--HHHHHHHhcchhHHHHHHH
Confidence 3689999999999999999999999999999999995 467776521 11 111 1113667777754 23333
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHH---HcC------------Cc-ccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLA---AVG------------LK-GVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~---~~g------------L~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
+...++.- .............+...++ .+. +. ...+.....+++|++||++.+.+++.
T Consensus 226 ~~~~~~~r---~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~--- 299 (377)
T 1svm_A 226 KGTGGESR---DLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRP--- 299 (377)
T ss_dssp CCSTTTTT---TCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCC---
T ss_pred HHHHHHHh---hccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCC---
Confidence 32221100 0000000000112233333 000 11 23455567899999999998877764
Q ss_pred CCCCCCcEEE-EeCCCC
Q 016804 247 KESVEPEVLL-YDEPTA 262 (382)
Q Consensus 247 ~~a~~P~iLL-LDEPta 262 (382)
.|++++ ||+|+.
T Consensus 300 ----~pDLliyLd~~~~ 312 (377)
T 1svm_A 300 ----KDYLKHCLERSEF 312 (377)
T ss_dssp ----CHHHHHHHHTCTH
T ss_pred ----CCCeEEEEeCCHH
Confidence 588877 888876
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.72 E-value=3.9e-10 Score=101.60 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=48.2
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE--EECCEEC
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV--YIRGRKR 155 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I--~i~G~~i 155 (382)
+|+++.++.....+.+++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 577888888888899999999999999999999999999999999987 77988 8888654
No 173
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.67 E-value=7.5e-09 Score=102.87 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=46.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN 187 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I-~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~en 187 (382)
-+++|+++.|.||+|||||||+..+++...+..|.| ++++.... ... ...++|+.+|+..+....++.+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~--ra~rlgv~~~~l~i~~~~~~e~~ 127 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPV--YAKNLGVDLKSLLISQPDHGEQA 127 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHH--HHHHHTCCGGGCEEECCSSHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chH--HHHHcCCchhhhhhhhccCHHHH
Confidence 388999999999999999999999999887777765 55554311 111 11235665655444333344433
No 174
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.65 E-value=2e-09 Score=105.27 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=61.4
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC----hhhhc---cceEEEE-ecCCCC
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEIS---GLRIGLV-FQSAAL 178 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~----~~~~~---~~~Ig~V-~Q~~~l 178 (382)
+++++|++++|++++|+||||+||||++..|++.+.+..|+|.+.+.|+..... ..+.. +..++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 478999999999999999999999999999999999999999998877542110 11111 3458999 777555
Q ss_pred CCCCCHHHHHH
Q 016804 179 FDSLTVRENVG 189 (382)
Q Consensus 179 ~~~lTV~eni~ 189 (382)
.+..++++++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55444455543
No 175
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.64 E-value=6.7e-11 Score=122.43 Aligned_cols=144 Identities=14% Similarity=0.228 Sum_probs=95.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
..+++++.+.|....+++++++++++| +.|+||||+|||||+++|++... .+.+.++|.++........ ..++.
T Consensus 40 k~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~--~~~v~ 113 (499)
T 2dhr_A 40 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVG--AARVR 113 (499)
T ss_dssp HHHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHH--HHHHH
T ss_pred HHHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhH--HHHHH
Confidence 345666666676667899999999999 99999999999999999999875 7899999877643211111 12466
Q ss_pred EEecCCC-CCCCCCHHHHHHhhHhhcC-C--CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 171 LVFQSAA-LFDSLTVRENVGFLLYENS-K--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 171 ~V~Q~~~-l~~~lTV~eni~~~~~~~~-~--~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.+||... ..+...+.|++........ . ...++..+.+.+++. +||||++|+..|++|..+
T Consensus 114 ~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn--- 177 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATN--- 177 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCS---
T ss_pred HHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecC---
Confidence 7888864 4566667777743221111 0 112333334444443 367888888888877765
Q ss_pred CCCCCCcEEEEeCCCC
Q 016804 247 KESVEPEVLLYDEPTA 262 (382)
Q Consensus 247 ~~a~~P~iLLLDEPta 262 (382)
+|++ |||+.-
T Consensus 178 ----~p~~--LD~aLl 187 (499)
T 2dhr_A 178 ----RPDI--LDPALL 187 (499)
T ss_dssp ----CGGG--SCTTTS
T ss_pred ----Chhh--cCcccc
Confidence 4665 777765
No 176
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.63 E-value=7.5e-09 Score=92.17 Aligned_cols=32 Identities=41% Similarity=0.498 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
|++++|+||||||||||+++|+|+++++.|.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~ 32 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFS 32 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEE
Confidence 67899999999999999999999998554443
No 177
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.61 E-value=2.2e-08 Score=98.57 Aligned_cols=126 Identities=19% Similarity=0.199 Sum_probs=80.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhc
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN 195 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~ 195 (382)
..-.++|+|++|+|||||++.|+|... . ..+.+... ....++.+.++.. .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~-----~~~~~~~t-------~~~~~~~~~~~~~-----------~------ 215 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-E-----IASYPFTT-------RGINVGQFEDGYF-----------R------ 215 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-E-----EECCTTCS-------SCEEEEEEEETTE-----------E------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-c-----cCCCCCee-------eceeEEEEEecCc-----------e------
Confidence 445799999999999999999998752 1 11111110 1113455544311 0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe-CCCCCCCHHHHHHHHH
Q 016804 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD-EPTAGLDPIASTVVED 274 (382)
Q Consensus 196 ~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD-EPtagLD~~~~~~l~~ 274 (382)
+..++..+..+..+.++|+|++|++. +.+... ++-++++| +|++++|......+.+
T Consensus 216 ---------------~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~a-------d~illV~D~s~~~~~~~~~~~~~~~ 272 (357)
T 2e87_A 216 ---------------YQIIDTPGLLDRPISERNEIEKQAIL-ALRYLG-------NLIIYIFDPSEHCGFPLEEQIHLFE 272 (357)
T ss_dssp ---------------EEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTC-------SEEEEEECTTCTTSSCHHHHHHHHH
T ss_pred ---------------EEEEeCCCccccchhhhhHHHHHHHH-HHHhcC-------CEEEEEEeCCccccCCHHHHHHHHH
Confidence 00111222334567789999999876 444433 58899999 9999999998877777
Q ss_pred HHHHHHHcCCCCCCCCCCceEEEEEc--cCHHH
Q 016804 275 LIRSVHKKGENGLANPGNIASYVVVT--HQHST 305 (382)
Q Consensus 275 lL~~l~~~g~~~~~~~~~~~tiIivT--Hdl~~ 305 (382)
.+.++.. + ..+|+|. ||+..
T Consensus 273 ~i~~~~~-~----------~piilV~NK~Dl~~ 294 (357)
T 2e87_A 273 EVHGEFK-D----------LPFLVVINKIDVAD 294 (357)
T ss_dssp HHHHHTT-T----------SCEEEEECCTTTCC
T ss_pred HHHHhcC-C----------CCEEEEEECcccCC
Confidence 7666543 3 3677777 88753
No 178
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.60 E-value=4.6e-08 Score=106.01 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=59.4
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE-Ec
Q 016804 223 LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA-GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV-VT 300 (382)
Q Consensus 223 ~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta-gLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIi-vT 300 (382)
.+.-+|.|+.+|..++++++. ++++||+|||.. +||......+++.+.+...+. .++++ +|
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~-------~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~----------~iIl~SAT 249 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLS-------RYSCIILDEAHERTLATDILMGLLKQVVKRRPDL----------KIIIMSAT 249 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCT-------TEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTC----------EEEEEESC
T ss_pred CEEEECHHHHHHHHhhCcccc-------CCCEEEecCccccccchHHHHHHHHHHHHhCCCc----------eEEEEecc
Confidence 455689999999999998876 699999999996 999876655555554433222 46777 49
Q ss_pred cCHHHHHHhhchhccccccc
Q 016804 301 HQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 301 Hdl~~~~~~aDrv~~~~~~~ 320 (382)
|+.+.+.++.+...++...|
T Consensus 250 ~~~~~l~~~~~~~~vi~v~g 269 (773)
T 2xau_A 250 LDAEKFQRYFNDAPLLAVPG 269 (773)
T ss_dssp SCCHHHHHHTTSCCEEECCC
T ss_pred ccHHHHHHHhcCCCcccccC
Confidence 99988888877654444433
No 179
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.60 E-value=2.2e-08 Score=89.14 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=30.3
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG 146 (382)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977766
No 180
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.57 E-value=3.2e-08 Score=101.87 Aligned_cols=151 Identities=18% Similarity=0.293 Sum_probs=89.7
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
++++...+.....++++++.+++| +.|+||+|+|||||+++|++... . .+-++.
T Consensus 28 l~e~v~~l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~----------~--------------~f~~is 81 (476)
T 2ce7_A 28 LKEVVEFLKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN----------V--------------PFFHIS 81 (476)
T ss_dssp HHHHHHHHHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT----------C--------------CEEEEE
T ss_pred HHHHHHHhhChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC----------C--------------CeeeCC
Confidence 334433344445677788888888 88999999999999999998321 0 111111
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
- ..+. .+ +.. .+++++|..+++|... .|.
T Consensus 82 ~-~~~~-~~----------------------------------------~~g--~~~~~~r~lf~~A~~~-------~p~ 110 (476)
T 2ce7_A 82 G-SDFV-EL----------------------------------------FVG--VGAARVRDLFAQAKAH-------APC 110 (476)
T ss_dssp G-GGTT-TC----------------------------------------CTT--HHHHHHHHHHHHHHHT-------CSE
T ss_pred H-HHHH-HH----------------------------------------Hhc--ccHHHHHHHHHHHHhc-------CCC
Confidence 0 0000 00 000 1677888889999875 599
Q ss_pred EEEEeCC----------CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 254 VLLYDEP----------TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 254 iLLLDEP----------tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
||++||+ +.+.|......+.+++..+..-+. .. ...||.+||+.+.+ |.- +++ .|+.+
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~-----~~-~viVIaaTn~~~~L----d~a-llR-~gRFd 178 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-----KE-GIIVMAATNRPDIL----DPA-LLR-PGRFD 178 (476)
T ss_dssp EEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-----GG-TEEEEEEESCGGGS----CGG-GGS-TTSSC
T ss_pred EEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-----CC-CEEEEEecCChhhh----chh-hcc-cCcce
Confidence 9999999 447777777777777777742100 00 15889999997543 321 122 35566
Q ss_pred heehhccCCCCc
Q 016804 324 VVIILGAVAPDK 335 (382)
Q Consensus 324 ~~~~~~~~~~~~ 335 (382)
..+.++. |+.
T Consensus 179 ~~i~i~~--Pd~ 188 (476)
T 2ce7_A 179 KKIVVDP--PDM 188 (476)
T ss_dssp EEEECCC--CCH
T ss_pred eEeecCC--CCH
Confidence 6555553 543
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.53 E-value=1.3e-07 Score=92.89 Aligned_cols=176 Identities=19% Similarity=0.238 Sum_probs=88.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC-CCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG--LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA-LFD 180 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G--l~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~-l~~ 180 (382)
..+|++++++++ .++|+|++|||||||++.|.| ++++.+|.++-....+.-..... .....+..++.+. .|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 98 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDD--GTREYAEFLHLPRKKFT 98 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSS--CSCCEEEETTSTTCCBS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCC--cccceeeeecCCCcccC
Confidence 358999999998 899999999999999999999 67888887764443321000000 0012344443322 111
Q ss_pred CC-CHHHHHHhhHhhc----CCCCHHHHHHHH----HHHHHHcCCcccccC-CCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 181 SL-TVRENVGFLLYEN----SKMRDEQISELV----KENLAAVGLKGVEDR-LPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 181 ~l-TV~eni~~~~~~~----~~~~~~~~~~~v----~~~L~~~gL~~~~~~-~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
.. .+.+.+....... .+.+...+.-.+ ..-+..+++.+..+. ...+.++.++|+..++++.+.
T Consensus 99 ~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~------- 171 (360)
T 3t34_A 99 DFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIE------- 171 (360)
T ss_dssp CHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhh-------
Confidence 10 1111111000000 000000000000 000011111111111 123467889999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTH 301 (382)
+|+++||.-..+..|... ....++++++...+. .+++++|.
T Consensus 172 ~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~---------~~i~V~nK 212 (360)
T 3t34_A 172 KPNCIILAISPANQDLAT-SDAIKISREVDPSGD---------RTFGVLTK 212 (360)
T ss_dssp SSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCT---------TEEEEEEC
T ss_pred cCCeEEEEeecccCCcCC-HHHHHHHHHhcccCC---------CEEEEEeC
Confidence 599888875444455443 445666666655442 47888876
No 182
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.47 E-value=6e-07 Score=87.07 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=39.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHK---KGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~---~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
+|.+|++||+... |......+.+.+.++.. .+ .++|++||+.+....+.++
T Consensus 125 ~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~----------~~iI~~~~~~~~~~~l~~~ 178 (389)
T 1fnn_A 125 LYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFR----------IALVIVGHNDAVLNNLDPS 178 (389)
T ss_dssp CCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCC----------EEEEEEESSTHHHHTSCHH
T ss_pred CeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCC----------EEEEEEECCchHHHHhCHH
Confidence 5889999999876 88888888888877655 23 6899999998765555443
No 183
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.45 E-value=3.7e-07 Score=90.09 Aligned_cols=129 Identities=11% Similarity=0.143 Sum_probs=83.4
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~ 185 (382)
-|+.+.--+.+|+++.|.|++|+|||||+.-++.-... .| ..+.|+.= .++..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-------~g--------------~~Vl~fSl------Ems~~ 87 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-------DD--------------RGVAVFSL------EMSAE 87 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-------TT--------------CEEEEEES------SSCHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC--------------CeEEEEeC------CCCHH
Confidence 34444445899999999999999999999888754321 11 13555431 23433
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
+-+ .++......+.+..+.+ ..||.+++||+..|...+. +++++|.|+|...
T Consensus 88 ql~----------------~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~-------~~~l~I~d~~~~s-- 139 (338)
T 4a1f_A 88 QLA----------------LRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLS-------QKKLFFYDKSYVR-- 139 (338)
T ss_dssp HHH----------------HHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHH-------HSCEEEECCTTCC--
T ss_pred HHH----------------HHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHh-------cCCeEEeCCCCCc--
Confidence 322 22222222233333322 3799999999999999886 4899999999754
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCCCCCCceEEEEEcc
Q 016804 266 PIASTVVEDLIRSVHKKG-ENGLANPGNIASYVVVTH 301 (382)
Q Consensus 266 ~~~~~~l~~lL~~l~~~g-~~~~~~~~~~~tiIivTH 301 (382)
..++...++++.++. + ..+|+|-|
T Consensus 140 ---i~~i~~~ir~l~~~~gg---------~~lIVIDy 164 (338)
T 4a1f_A 140 ---IEQIRLQLRKLKSQHKE---------LGIAFIDY 164 (338)
T ss_dssp ---HHHHHHHHHHHHHHCTT---------EEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCC---------CCEEEEec
Confidence 336677777776652 2 57888753
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.43 E-value=5.9e-08 Score=85.99 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEEC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIR 151 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~ 151 (382)
+|++++|+||||||||||+++|++++++ ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 6999999999999999999999999874 56666554
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.42 E-value=7.8e-09 Score=92.88 Aligned_cols=122 Identities=19% Similarity=0.236 Sum_probs=66.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (382)
+++|+|||||||||+.++|+++ |...+++.++ .+ .+. + +.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~---------~~-~~~---~-----~~----------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV---------AR-EVV---A-----KD----------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH---------HH-HTT---C-----SS-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH---------HH-HHc---c-----CC-----------------
Confidence 6899999999999999999994 5555543211 00 000 0 00
Q ss_pred CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 016804 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (382)
Q Consensus 199 ~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~ 278 (382)
. ..+.++.+.+|...+ .+.|+.+|..+++.+.. +|+.+..+ .+.++|..+..+.+.+..
T Consensus 44 ~-----~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~-------~~~~~~~l--~~~~~p~v~~~~~~~~~~ 102 (206)
T 1jjv_A 44 S-----PLLSKIVEHFGAQIL-------TEQGELNRAALRERVFN-------HDEDKLWL--NNLLHPAIRERMKQKLAE 102 (206)
T ss_dssp C-----HHHHHHHHHHCTTCC-------------CHHHHHHHHHT-------CHHHHHHH--HHHHHHHHHHHHHHHHHT
T ss_pred h-----HHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhC-------CHHHHHHH--HhccCHHHHHHHHHHHHh
Confidence 0 012334455554322 36789999999988875 35543222 334556655555544432
Q ss_pred HHHcCCCCCCCCCCceEEEEEccCHHHH--HHhhchh
Q 016804 279 VHKKGENGLANPGNIASYVVVTHQHSTI--RRAVDRL 313 (382)
Q Consensus 279 l~~~g~~~~~~~~~~~tiIivTHdl~~~--~~~aDrv 313 (382)
. .+ .++|+.+|.+.+. ...||++
T Consensus 103 ~--~~----------~~vv~~~~~l~e~~~~~~~d~v 127 (206)
T 1jjv_A 103 Q--TA----------PYTLFVVPLLIENKLTALCDRI 127 (206)
T ss_dssp C--CS----------SEEEEECTTTTTTTCGGGCSEE
T ss_pred c--CC----------CEEEEEechhhhcCcHhhCCEE
Confidence 2 12 2788889987665 4556655
No 186
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=1.3e-07 Score=84.83 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=24.9
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..+++||||++.+|++++|+||+||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999766
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.37 E-value=3e-08 Score=105.71 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=80.7
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHH
Q 016804 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188 (382)
Q Consensus 111 sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni 188 (382)
|+++++|..++|+|+||+|||||++.|++...+ ..|+| .+|..+..+.. .+. ++.+++.+|...++.. ++..|+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~-~e~-~~giti~~~~~~~~~~-~~~~nl 78 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTP-EAK-LHRTTVRTGVAPLLFR-GHRVFL 78 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSH-HHH-HTTSCCSCEEEEEEET-TEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCH-HHH-hcCCeEEecceEEeeC-CEEEEE
Confidence 467789999999999999999999999987765 67888 67765544322 111 2246676666554432 222221
Q ss_pred HhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHH
Q 016804 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (382)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~ 268 (382)
.. ..|..++ +-...+++-. .+.-++++| |+.++++..
T Consensus 79 iD----------------------TpG~~~f--------------~~~~~~~l~~------ad~~ilVvD-~~~g~~~qt 115 (665)
T 2dy1_A 79 LD----------------------APGYGDF--------------VGEIRGALEA------ADAALVAVS-AEAGVQVGT 115 (665)
T ss_dssp EE----------------------CCCSGGG--------------HHHHHHHHHH------CSEEEEEEE-TTTCSCHHH
T ss_pred Ee----------------------CCCccch--------------HHHHHHHHhh------cCcEEEEEc-CCcccchhH
Confidence 10 0011110 0012222221 268899999 999999877
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH
Q 016804 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (382)
Q Consensus 269 ~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~ 306 (382)
+.. ++.+.+.+ ..+|++.|.++..
T Consensus 116 ~~~----~~~~~~~~----------ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERA----WTVAERLG----------LPRMVVVTKLDKG 139 (665)
T ss_dssp HHH----HHHHHHTT----------CCEEEEEECGGGC
T ss_pred HHH----HHHHHHcc----------CCEEEEecCCchh
Confidence 633 33333344 4788899988764
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.33 E-value=1.1e-07 Score=87.70 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=36.1
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 111 sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
+.+.++|++++|+|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 345579999999999999999999999998 78899988753
No 189
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.30 E-value=1.9e-08 Score=98.55 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=43.1
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCc------EEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGE------AVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge------~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
+.+++.|++...|++++..+.+++ ++||+||||||||||+++|++++.+
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 445666778889999999998887 9999999999999999999999873
No 190
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.29 E-value=8.7e-08 Score=86.40 Aligned_cols=43 Identities=23% Similarity=0.209 Sum_probs=38.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
..++|++++|+|+||||||||+++|++++++..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3578999999999999999999999999998889998876553
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.24 E-value=2.9e-07 Score=84.19 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=27.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999999876
No 192
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.23 E-value=2.8e-07 Score=88.74 Aligned_cols=154 Identities=13% Similarity=0.167 Sum_probs=86.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC---CCC--CCC--HHHHH
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA---LFD--SLT--VRENV 188 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~---l~~--~lT--V~eni 188 (382)
++.+++|+|++|+|||||++.|.|.. +.+..... ... .....|++.++.. +++ +.- ....+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tT-r~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l 74 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTT-RHRIVGIHTEGAYQAIYVDTPGLHMEEKRAI 74 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCC-SSCEEEEEEETTEEEEEESSSSCCHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----Ccc-eeeEEEEEEECCeeEEEEECcCCCccchhhH
Confidence 44589999999999999999999963 22211110 000 1123567776542 111 110 00000
Q ss_pred HhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHH
Q 016804 189 GFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (382)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~ 267 (382)
. +...+.+..+++.+++--+ .+. ..+|.|++ .+++++.. ...|.++++ +.+|..
T Consensus 75 ~-----------~~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~-----~~~P~ilvl----NK~D~~ 129 (301)
T 1ega_A 75 N-----------RLMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLRE-----GKAPVILAV----NKVDNV 129 (301)
T ss_dssp H-----------HHHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHS-----SSSCEEEEE----ESTTTC
T ss_pred H-----------HHHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHh-----cCCCEEEEE----ECcccC
Confidence 0 0000001112222222222 222 22898886 56677753 136999998 789987
Q ss_pred H-HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 268 A-STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 268 ~-~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
. +..+.+.+.++.+... ....+.+++|+-..+..+.|.+
T Consensus 130 ~~~~~~~~~l~~l~~~~~-------~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 130 QEKADLLPHLQFLASQMN-------FLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHHHHHHHHHHTTSC-------CSEEEECCTTTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-------cCceEEEECCCCCCHHHHHHHH
Confidence 6 6778888888876421 0036778888888888888877
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.22 E-value=5.1e-07 Score=81.84 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=30.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEE
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYI 150 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i 150 (382)
++|++++|+||||||||||++.|++.+++ ..+.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~ 42 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM 42 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec
Confidence 58999999999999999999999999987 4444443
No 194
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.21 E-value=2.9e-06 Score=86.35 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
++.+++++|||||||||++..|++.+.+..++|.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 588999999999999999999999998877777765543
No 195
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.20 E-value=8.1e-09 Score=101.29 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=57.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
+++.+++.++|+.+.+++++++.+.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+.
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 46667777778777899999999999999999999999999999999999988888888877654
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.20 E-value=3.2e-07 Score=79.98 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=32.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999975 8889988654
No 197
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.17 E-value=3.3e-07 Score=95.90 Aligned_cols=43 Identities=35% Similarity=0.400 Sum_probs=38.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEE-ECCEEC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVY-IRGRKR 155 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG-~I~-i~G~~i 155 (382)
.+++|++++|+|+||||||||+++|+|++.|++| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5779999999999999999999999999999987 785 888654
No 198
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=3.1e-09 Score=103.30 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=45.9
Q ss_pred EEEEeCCeeeeEeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 97 VYKSFGEKHILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 97 vs~~yg~~~iL~~vsl~i~~Ge~--vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
++..||...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 33346777889999999999998 999999999999999999998877666544433
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.12 E-value=1.2e-06 Score=78.56 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=28.2
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
-++++|++++|+|++|||||||+++|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3678899999999999999999999999864
No 200
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.03 E-value=8.1e-08 Score=100.05 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=52.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
+-++++.+.|++..++.++++++ +|+.++|+||||||||||+++|++...+..|+|.+.|..
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred ccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 33566777776667889999998 899999999999999999999999999999999988743
No 201
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.03 E-value=1.5e-05 Score=77.15 Aligned_cols=122 Identities=11% Similarity=0.142 Sum_probs=74.9
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCH
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV 184 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV 184 (382)
+.|+.+.--+++|+++.|.|++|+|||||+..++.-.-- .| ..+.|+.=+ ++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-------~g--------------~~vl~~slE------~s~ 108 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------ND--------------DVVNLHSLE------MGK 108 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-------TT--------------CEEEEEESS------SCH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC--------------CeEEEEECC------CCH
Confidence 345555545899999999999999999998888742110 01 135555421 344
Q ss_pred HHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCC
Q 016804 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264 (382)
Q Consensus 185 ~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagL 264 (382)
.+-.. ++......+.+..+.+.. ..||.++++|+..|...+. ++++++.|+|...
T Consensus 109 ~~l~~----------------R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~-------~~~i~i~d~~~~~- 163 (315)
T 3bh0_A 109 KENIK----------------RLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEIS-------NSNINIFDKAGQS- 163 (315)
T ss_dssp HHHHH----------------HHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHH-------TSCEEEECCSCCB-
T ss_pred HHHHH----------------HHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHh-------CCCEEEECCCCCC-
Confidence 33322 111111112222221111 2389999999999998886 4889999998643
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 016804 265 DPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 265 D~~~~~~l~~lL~~l~~~ 282 (382)
..++...++++.++
T Consensus 164 ----~~~i~~~i~~l~~~ 177 (315)
T 3bh0_A 164 ----VNYIWSKTRQTKRK 177 (315)
T ss_dssp ----HHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHh
Confidence 34466677777655
No 202
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.02 E-value=8e-05 Score=68.16 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGE 147 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~ 147 (382)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 47899999999999999999987776653
No 203
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.99 E-value=2.2e-06 Score=74.25 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
.|++++|+||||||||||+++|++.+.+ +.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 55654
No 204
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.89 E-value=1.5e-06 Score=83.71 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~ 144 (382)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999877554
No 205
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.89 E-value=1.4e-06 Score=78.73 Aligned_cols=59 Identities=29% Similarity=0.369 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEE--------CCEECCCCCChhhhccceEEEEecCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL---APDKGEVYI--------RGRKRAGLISDEEISGLRIGLVFQSA 176 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~---~p~sG~I~i--------~G~~i~~~~~~~~~~~~~Ig~V~Q~~ 176 (382)
+.+++|+|||||||||++++|++.+ .+++|++.. .|.++.......+. ..++++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPL-ASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHH-HHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHH-HHhCceeeecc
Confidence 5689999999999999999999876 788999887 66653210000111 12488898864
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.88 E-value=2.6e-06 Score=74.63 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=32.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEE
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRK 154 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG--~I~i~G~~ 154 (382)
.+|++++|+|++||||||++++|++.+++ .| .|.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence 47999999999999999999999998766 56 66666543
No 207
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.85 E-value=1e-05 Score=81.58 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=87.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA------------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~------------p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
.++|+|+||+|||||++.|+|... +.+|.+.++|+++.-+.... .+.+.++.+|....|..++..+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G--~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG--LRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSC--C-----------CCSCCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCC--CccccccchhhHHHHHHHHHHH
Confidence 799999999999999999999864 67899999998643211111 1112445556666666555566
Q ss_pred HHHhhH------hhcCCCCHHHHHHHHHHHHHHcCCcc-----cccCCCC-CCChHHHHHHHHHHHHhcCCCCCCCCCcE
Q 016804 187 NVGFLL------YENSKMRDEQISELVKENLAAVGLKG-----VEDRLPS-ELSGGMKKRVALARSIIFDNTKESVEPEV 254 (382)
Q Consensus 187 ni~~~~------~~~~~~~~~~~~~~v~~~L~~~gL~~-----~~~~~~~-~LSGGqrQRVaIArAL~~~~~~~a~~P~i 254 (382)
++...- ....+.... ...+.+.++..+..- ..|.... +-+.-+ -.-.+++.+..- ...++
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~--~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~ 331 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQ--DQRMAGLMERRGRASVVVFNKWDLVVHREKRYDE-FTKLFREKLYFI-----DYSPL 331 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHH--HHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHH-HHHHHHHHCGGG-----TTSCE
T ss_pred HHhhCCEEEEEEeCCCCCCHH--HHHHHHHHHHcCCCEEEEEECccCCCchhhHHHH-HHHHHHHHhccC-----CCCcE
Confidence 654421 011122222 234555666655421 1121110 111111 111444544321 12444
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 255 LLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
+ ++|++.-....++++.+.+...+. +.-+.|+.++.+..-
T Consensus 332 ~----~~SA~~g~gv~~l~~~i~~~~~~~-----------~~~i~t~~ln~~l~~ 371 (439)
T 1mky_A 332 I----FTSADKGWNIDRMIDAMNLAYASY-----------TTKVPSSAINSALQK 371 (439)
T ss_dssp E----ECBTTTTBSHHHHHHHHHHHHHHH-----------TCCCCHHHHHHHHHH
T ss_pred E----EEECCCCCCHHHHHHHHHHHHHhh-----------cccCCHHHHHHHHHH
Confidence 4 599999999999998888876542 234577777766543
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.85 E-value=7.8e-06 Score=82.79 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 251 EPEVLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~-~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
+|++|++||+..-.+. ..+..++..+..+.+.+ ..+|++||+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~----------~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG----------KQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT----------CEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC----------CeEEEEECC
Confidence 4999999999877664 67888999999887765 478889997
No 209
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.83 E-value=9.9e-07 Score=89.52 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=50.8
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
.+++++.|+... ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.|..
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 456777787654 788888 89999999999999999999999999999999999887653
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.82 E-value=4.2e-06 Score=91.06 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=28.5
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
|.+++|+.+.|+||||||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999999999864
No 211
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.81 E-value=2e-06 Score=86.59 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=46.6
Q ss_pred eEEEEeEEEEeCC-eeeeE--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 91 LIDCRNVYKSFGE-KHILR--------------GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~--------------~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-+.++||++.|+. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3778999999975 56899 899999999999999999999999999999875
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.81 E-value=3.5e-06 Score=82.95 Aligned_cols=42 Identities=24% Similarity=0.402 Sum_probs=36.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
+++.+++|+|++|||||||++.|+|.+.++.|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 357899999999999999999999999888888888776543
No 213
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.80 E-value=1.1e-05 Score=69.76 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=24.3
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 899999999999999999873
No 214
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.78 E-value=7.6e-05 Score=73.02 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998874
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.78 E-value=7.8e-06 Score=75.64 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=32.4
Q ss_pred eEeeeEEEe---CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 016804 107 LRGVSFKIR---HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (382)
Q Consensus 107 L~~vsl~i~---~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~ 151 (382)
|.++||.+. +|.+++|.||+||||||+++.|+..+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 566666665 8999999999999999999999999887 6666543
No 216
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.75 E-value=3.1e-05 Score=72.95 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++..+.|.||+|+|||||++.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46678999999999999999999843
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.71 E-value=6.3e-06 Score=74.42 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=37.3
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEE
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRK 154 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG--~I~i~G~~ 154 (382)
+.+++|.++.|+|++||||||+.+.|++.+.|+.| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34678999999999999999999999999988888 88887643
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.67 E-value=9.4e-07 Score=85.37 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=49.7
Q ss_pred EEeEEEEeCCeeeeEe-eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 94 CRNVYKSFGEKHILRG-VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~-vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
.+++.+.|++.. ++ ++|+.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.|..
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 456666776543 56 888876 9999999999999999999999999988889998876643
No 219
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.66 E-value=3.3e-05 Score=68.07 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=20.6
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.++++++++.++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4788999998887 678999999999999999998
No 220
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.66 E-value=7.5e-06 Score=72.86 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=38.0
Q ss_pred EEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--------CCCCccEEEECCE
Q 016804 98 YKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--------LAPDKGEVYIRGR 153 (382)
Q Consensus 98 s~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--------~~p~sG~I~i~G~ 153 (382)
+++|++ ..+++++||..+++. ++|+|++|+|||||++.+.+- ..++.+.+.++|.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 345654 468899999888875 689999999999999999872 2234566666653
No 221
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.65 E-value=2.6e-06 Score=84.17 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=39.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~ 153 (382)
.+.++|+++.|+.+.++++++|+| +|+|+||+|||||++.|.|...+..|.+...+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 488999999998888999999987 999999999999999999987766665544443
No 222
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.64 E-value=3.9e-05 Score=66.64 Aligned_cols=28 Identities=43% Similarity=0.595 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++|..++|+|++|+|||||++.++|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3678899999999999999999998753
No 223
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.54 E-value=5.6e-05 Score=68.49 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=23.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
+.++++.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445556554 99999999999999999885
No 224
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.53 E-value=0.00028 Score=68.21 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999988764
No 225
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.48 E-value=4.6e-05 Score=67.32 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=26.8
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 67889999999999999999999999999875
No 226
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.47 E-value=2.8e-05 Score=68.36 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=31.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~ 149 (382)
...+|.++.|+|++||||||+.+.|+..+.+..|.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457999999999999999999999998877666653
No 227
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.45 E-value=0.00013 Score=62.38 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999754
No 228
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.45 E-value=5.1e-05 Score=67.46 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+|+|||||||+.++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 229
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.44 E-value=8.3e-05 Score=64.36 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.38 E-value=7.1e-05 Score=67.06 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=26.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
No 231
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.36 E-value=0.00016 Score=71.30 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=33.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
+.++.|+.. +...+++..+++.+| +.+|+|||||||||+|..|.
T Consensus 3 M~l~~L~l~--nFr~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMN--NFKSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEE--EETTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEE--ccccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 455666553 223456778888775 89999999999999999986
No 232
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.35 E-value=0.00036 Score=61.77 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999997543
No 233
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.33 E-value=9.2e-05 Score=74.42 Aligned_cols=41 Identities=22% Similarity=0.504 Sum_probs=34.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC-----------CCCCccEEEECCE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL-----------LAPDKGEVYIRGR 153 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl-----------~~p~sG~I~i~G~ 153 (382)
.+..|..++|+|+||+|||||++.|+|. ..|..|.|.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6788898887663
No 234
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.32 E-value=0.00024 Score=70.22 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+++.|.||+|+|||||...++.-
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999999887754
No 235
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.31 E-value=0.00065 Score=64.91 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=25.7
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcC
Q 016804 251 EPEVLLYDEPTA-GLDPIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 251 ~P~iLLLDEPta-gLD~~~~~~l~~lL~~l~~~g 283 (382)
++.+|++||+-. ..+...+..+...+..+.+.+
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~ 131 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE 131 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC
Confidence 499999999865 234477888999998887765
No 236
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.25 E-value=0.0011 Score=66.83 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=30.3
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..|+.+.--+++|+++.|.|++|+|||||+.-++.-.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3456555458999999999999999999998887644
No 237
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.21 E-value=0.00016 Score=63.12 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPD 144 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~ 144 (382)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47899999999999999999975443
No 238
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.17 E-value=0.00012 Score=65.23 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEE
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRK 154 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~ 154 (382)
-.+++|+|+||||||||++.|++.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3579999999999999999999876543 3777776543
No 239
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.14 E-value=0.00017 Score=64.08 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~ 153 (382)
..+++|+|++|||||||.+.|++.+ |.+.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 4689999999999999999999865 45555543
No 240
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.14 E-value=0.00019 Score=62.58 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 241
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.07 E-value=0.00027 Score=64.81 Aligned_cols=36 Identities=39% Similarity=0.553 Sum_probs=28.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc---CCCCCccEEE
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAG---LLAPDKGEVY 149 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~G---l~~p~sG~I~ 149 (382)
-.+|.+++|+|++||||||+.++|++ +..++.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 46789999999999999999999996 3345555554
No 242
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.04 E-value=0.00022 Score=66.31 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=33.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
....+.++.|+|++||||||+.+.|+..+. .|.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 466788999999999999999999998764 3567778754
No 243
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.03 E-value=6e-05 Score=74.82 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=33.1
Q ss_pred eeeEeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCC
Q 016804 105 HILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~--vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467788888999999 9999999999999999999864
No 244
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.02 E-value=0.00068 Score=63.17 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+..+.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999998754
No 245
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.02 E-value=0.00034 Score=59.75 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 246
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.98 E-value=0.00013 Score=68.08 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHH---cCCCCCccEE
Q 016804 117 GEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEV 148 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~---Gl~~p~sG~I 148 (382)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999999 6655566665
No 247
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.97 E-value=0.00023 Score=65.70 Aligned_cols=34 Identities=41% Similarity=0.626 Sum_probs=24.6
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++++++.+++| +.|+||+|+|||||++.|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44555555666 88999999999999999998753
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.00046 Score=59.62 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998664
No 249
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.91 E-value=0.00015 Score=64.63 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=24.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
+++|.|++||||||+++.|+..+.+....|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998876443333
No 250
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.89 E-value=0.00047 Score=60.49 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 251
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.86 E-value=0.00057 Score=59.30 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 252
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.84 E-value=0.00028 Score=69.60 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=39.1
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 251 EPEVLLYDEPTAGLD---PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 251 ~P~iLLLDEPtagLD---~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+|.++++||-=.-++ +.....+.+.+++.++.| ..++++||+++.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g----------~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYN----------GSLIVISQNVIDFL 311 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGT----------CEEEEEESCGGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhC----------eEEEEEcCCHHHhh
Confidence 589999999988884 677788888888887776 58999999987654
No 253
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.82 E-value=0.00058 Score=57.82 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 016804 119 AVGIIGPSGTGKSTILKII 137 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI 137 (382)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 254
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.81 E-value=0.0005 Score=60.44 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
..+++|+|++||||||+.+.|+.. |-..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999985 6666654
No 255
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.81 E-value=0.00061 Score=61.22 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
.+-+++|.|++||||||+.+.|+.+ |-..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999983 5445543
No 256
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.79 E-value=0.0013 Score=57.42 Aligned_cols=35 Identities=31% Similarity=0.609 Sum_probs=25.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc-C----CCCCcc----EEEECCE
Q 016804 119 AVGIIGPSGTGKSTILKIIAG-L----LAPDKG----EVYIRGR 153 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G-l----~~p~sG----~I~i~G~ 153 (382)
.++|+|++|+|||||++.+.+ - ..|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 488999999999999975554 3 456666 5566664
No 257
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.73 E-value=0.00071 Score=58.97 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999864
No 258
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.67 E-value=0.00097 Score=58.01 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998543
No 259
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.64 E-value=0.0011 Score=58.44 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 260
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.64 E-value=0.0014 Score=65.10 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc-----------CCCCCccEEEECC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAG-----------LLAPDKGEVYIRG 152 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~G-----------l~~p~sG~I~i~G 152 (382)
|-.++|||.+|+|||||++.|+| -..|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45689999999999999999999 3467788888765
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.63 E-value=0.00093 Score=58.09 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.++..+.|+|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999983
No 262
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.62 E-value=0.00086 Score=62.58 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+||||||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 263
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.61 E-value=0.00096 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998654
No 264
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.60 E-value=0.00073 Score=64.39 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=26.7
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.+.++..+.|.||+|+|||||+++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788899999999999999999999875
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.59 E-value=0.0011 Score=56.93 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=24.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~ 151 (382)
.++.|.|++||||||+.+.|+.. .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 36899999999999999999871 12555555
No 266
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.59 E-value=0.0019 Score=62.97 Aligned_cols=49 Identities=33% Similarity=0.343 Sum_probs=38.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc----CCCCCccEEEECC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG----LLAPDKGEVYIRG 152 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G----l~~p~sG~I~i~G 152 (382)
....+++..+++ .|.-+.|.|+||+|||||...+.+ |+..|...|...+
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 356889999988 889999999999999999999987 4444545554433
No 267
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.58 E-value=0.001 Score=59.95 Aligned_cols=22 Identities=55% Similarity=0.729 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.|+||||||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
No 268
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.56 E-value=0.0012 Score=58.12 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+|-+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987554
No 269
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.54 E-value=0.0012 Score=57.53 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998543
No 270
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.53 E-value=0.0013 Score=58.29 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+|-+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 271
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.52 E-value=0.0013 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|++|+|||||++.+.+-.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 272
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.50 E-value=0.0012 Score=62.91 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=28.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
..|.++.|.|||||||||+.+.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3567899999999999999999986543 35677765
No 273
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0014 Score=56.79 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+.+++|+|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 274
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.47 E-value=0.0015 Score=57.96 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
..+|-+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999854
No 275
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.44 E-value=0.0014 Score=56.73 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.|.|++||||||+.+.|+--+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998754
No 276
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.43 E-value=0.0014 Score=61.32 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 260 PtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||+++.....++++.+.++..+.. .+..+..|..+.+.+.++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKV---------TTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCC---------CCCCCCCCCCHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccc---------cCCCCCcCCCHHHHHHHHHH
Confidence 9999999999999999988876531 24466788889999999987
No 277
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.40 E-value=0.0016 Score=57.45 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 278
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.39 E-value=0.0017 Score=56.70 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 279
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.32 E-value=0.0013 Score=61.89 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=26.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
..+.|.||+|+|||||.++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887665533
No 280
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.31 E-value=0.0015 Score=56.48 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.++.|.|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998543
No 281
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.28 E-value=0.0021 Score=56.18 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+..+-+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467799999999999999999998644
No 282
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0022 Score=55.61 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
=.++|+|++|+|||||++.+.+-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999998653
No 283
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.23 E-value=0.0022 Score=56.99 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
.+++|+|++|||||||+..|++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999987653
No 284
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.22 E-value=0.0015 Score=59.73 Aligned_cols=115 Identities=18% Similarity=0.088 Sum_probs=63.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhh
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE 194 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~ 194 (382)
.+|+.+.++||+||||||++.++..-.....| ....++++++.|......++.+++......
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQND------------------RAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------------CCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 46899999999999999998876432111101 011356788877655555667776542210
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcc-cccCC------CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC-CCCH
Q 016804 195 NSKMRDEQISELVKENLAAVGLKG-VEDRL------PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA-GLDP 266 (382)
Q Consensus 195 ~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~------~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta-gLD~ 266 (382)
. .. ..+|... ..++. +--.+.|...+... ..+. +-+++++||.-. ++|.
T Consensus 136 ~--~~------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~--~~l~-------~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 136 E--PG------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKLE--AGIR-------GISHVIVDEIHERDINT 192 (235)
T ss_dssp C--TT------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHH--HCCT-------TCCEEEECCTTSCCHHH
T ss_pred c--cC------------ceEEEeechhhccCCCCCeEEEECHHHHHHHHH--hhhc-------CCcEEEEECCccCCcch
Confidence 0 00 0011110 00111 11134566666533 2343 699999999976 5766
Q ss_pred HHHH
Q 016804 267 IAST 270 (382)
Q Consensus 267 ~~~~ 270 (382)
....
T Consensus 193 ~~~~ 196 (235)
T 3llm_A 193 DFLL 196 (235)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 285
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.20 E-value=0.0023 Score=53.61 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 286
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.18 E-value=0.0026 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
No 287
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.17 E-value=0.0025 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999864
No 288
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.17 E-value=0.0026 Score=57.63 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++.++.|+|+.||||||+.+.|+--+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
No 289
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.17 E-value=0.0029 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+|-++.|+|+.||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 290
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.16 E-value=0.0026 Score=56.71 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|.||.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 291
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0026 Score=53.29 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 292
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.16 E-value=0.0023 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 293
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.14 E-value=0.0081 Score=60.87 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=27.4
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
-|+.+.--+++|+++.|.|++|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3444443489999999999999999999877765
No 294
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.13 E-value=0.0021 Score=53.93 Aligned_cols=24 Identities=33% Similarity=0.637 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|+.|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 478999999999999999987543
No 295
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.13 E-value=0.0026 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988643
No 296
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.12 E-value=0.0024 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 297
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.12 E-value=0.0026 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 298
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.11 E-value=0.027 Score=57.43 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=23.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
-+++|+++.|.|++|+|||||+.-++-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 489999999999999999999776654
No 299
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.10 E-value=0.0029 Score=53.22 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 378999999999999999987543
No 300
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.10 E-value=0.0032 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-++++|.|+.||||||+.+.|+-.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999863
No 301
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.09 E-value=0.0028 Score=55.96 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999764
No 302
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.09 E-value=0.0029 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999853
No 303
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.09 E-value=0.003 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 304
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.08 E-value=0.0032 Score=53.67 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 305
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.07 E-value=0.0028 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998865
No 306
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.07 E-value=0.0035 Score=55.44 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999864
No 307
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.06 E-value=0.0026 Score=57.33 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+-++.|+||+||||||+.+.|+--+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998543
No 308
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.06 E-value=0.0029 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 309
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.06 E-value=0.0031 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..+++|.|+.||||||+.+.|+--+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998543
No 310
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.06 E-value=0.0032 Score=56.27 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+||.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 311
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.05 E-value=0.0029 Score=53.13 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 312
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.04 E-value=0.0028 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 313
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.03 E-value=0.003 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999988754
No 314
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.03 E-value=0.0031 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 315
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.02 E-value=0.004 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999874
No 316
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.02 E-value=0.0027 Score=53.77 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 317
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.02 E-value=0.0033 Score=59.53 Aligned_cols=23 Identities=26% Similarity=0.665 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 318
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.01 E-value=0.0031 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
No 319
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.00 E-value=0.0033 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 320
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.00 E-value=0.0033 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999975
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.98 E-value=0.003 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 322
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.97 E-value=0.0031 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999876
No 323
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.94 E-value=0.0033 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999864
No 324
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.94 E-value=0.0058 Score=56.08 Aligned_cols=39 Identities=33% Similarity=0.354 Sum_probs=31.1
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.....+++.-+++ .|..+.|+||+|||||||...|+.-.
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3455677777766 68889999999999999999998643
No 325
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.93 E-value=0.0045 Score=55.10 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999986543
No 326
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.92 E-value=0.0077 Score=70.24 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=26.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+++|+++.|.||+|+|||||+..++....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999999999987543
No 327
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.92 E-value=0.0037 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 328
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.92 E-value=0.0039 Score=57.61 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998743
No 329
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.92 E-value=0.0036 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 330
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.89 E-value=0.0038 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 331
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.89 E-value=0.0041 Score=57.55 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|++|+|||||++.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 332
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.89 E-value=0.0047 Score=57.76 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 333
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.89 E-value=0.0038 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 334
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.89 E-value=0.004 Score=53.50 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
.++|+|+.|+|||||++.+.|-...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987653
No 335
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.88 E-value=0.0036 Score=62.08 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
No 336
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.86 E-value=0.0024 Score=54.65 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 337
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.86 E-value=0.0039 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998853
No 338
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.86 E-value=0.0044 Score=55.72 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.-+++|.|+.||||||+.+.|+-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 339
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.86 E-value=0.004 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.85 E-value=0.0044 Score=52.56 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 341
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.82 E-value=0.0043 Score=51.88 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++++|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
No 342
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.81 E-value=0.0048 Score=57.46 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 343
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.81 E-value=0.004 Score=52.62 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 344
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.79 E-value=0.0044 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 38999999999999999998743
No 345
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0045 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 346
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.76 E-value=0.0047 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 347
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.74 E-value=0.0047 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998753
No 348
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.73 E-value=0.0051 Score=58.98 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+|++|+|||||++.|.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999863
No 349
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.70 E-value=0.0054 Score=55.63 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
No 350
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.69 E-value=0.0051 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 351
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.69 E-value=0.0049 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 352
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.66 E-value=0.0056 Score=58.64 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+|+.|+|||||++.|.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999863
No 353
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.65 E-value=0.0049 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 354
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.65 E-value=0.0067 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998764
No 355
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.64 E-value=0.0053 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998653
No 356
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.64 E-value=0.0039 Score=55.36 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 357
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.63 E-value=0.006 Score=56.29 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++-+++|.||.||||||+.+.|+--
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999999743
No 358
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.61 E-value=0.006 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999865
No 359
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.60 E-value=0.0057 Score=52.81 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999754
No 360
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.60 E-value=0.0056 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 361
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.59 E-value=0.0032 Score=60.13 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++-++||.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
No 362
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.59 E-value=0.0012 Score=58.20 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987543
No 363
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.59 E-value=0.0058 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 364
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.57 E-value=0.006 Score=52.16 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
No 365
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0055 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 366
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.56 E-value=0.0061 Score=51.93 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999854
No 367
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.56 E-value=0.0048 Score=57.77 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|++|+|||||++.|.|-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999988754
No 368
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.55 E-value=0.0056 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 369
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.55 E-value=0.0062 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 370
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.54 E-value=0.006 Score=52.43 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
No 371
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.51 E-value=0.0066 Score=54.36 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 372
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0059 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 373
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.50 E-value=0.007 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 374
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.48 E-value=0.0072 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+|-.+.|+|+.||||||+.+.|+--+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998644
No 375
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.47 E-value=0.0065 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-.++|+|+.|+|||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 376
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.45 E-value=0.014 Score=52.48 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=28.5
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
+..++..-+++ .|.-+.|.|+||+|||||...+..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45667776665 688899999999999999987764
No 377
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.44 E-value=0.007 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 378
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.44 E-value=0.0066 Score=51.82 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 379
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.42 E-value=0.0066 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999999864
No 380
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.42 E-value=0.0078 Score=52.87 Aligned_cols=22 Identities=50% Similarity=0.786 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 381
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.40 E-value=0.0073 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38899999999999999998754
No 382
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.40 E-value=0.0078 Score=56.53 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 016804 118 EAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~G 139 (382)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 383
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.40 E-value=0.0068 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 384
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.38 E-value=0.0075 Score=56.91 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
No 385
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.38 E-value=0.0068 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 386
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.37 E-value=0.0066 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 387
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.37 E-value=0.0076 Score=53.03 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 388
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.36 E-value=0.0078 Score=61.72 Aligned_cols=43 Identities=19% Similarity=0.461 Sum_probs=33.4
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
.+++.+ +.+-+|+..+|+||+|+|||||++.|++-.....|.|
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 356555 6788999999999999999999999987654333333
No 389
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.36 E-value=0.0077 Score=51.79 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998753
No 390
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.0085 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999964
No 391
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.35 E-value=0.0078 Score=52.28 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 392
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.34 E-value=0.0092 Score=56.15 Aligned_cols=31 Identities=39% Similarity=0.485 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
-.++++|.+|+|||||++.|.|-.....|.+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 4789999999999999999999776554543
No 393
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.34 E-value=0.0078 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 394
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.33 E-value=0.008 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 395
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.33 E-value=0.008 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 396
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.32 E-value=0.0056 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998764
No 397
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.32 E-value=0.0074 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 398
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.008 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 399
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.31 E-value=0.0071 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
No 400
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.30 E-value=0.009 Score=50.79 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356678999999999999999987654
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.30 E-value=0.01 Score=54.03 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+..+.|+|+.||||||+.+.|+--+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998643
No 402
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.30 E-value=0.0083 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 403
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.0075 Score=53.61 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988764
No 404
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.29 E-value=0.0098 Score=54.29 Aligned_cols=28 Identities=39% Similarity=0.458 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
-+|-++.|-|+.||||||+++.|+-.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
No 405
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.29 E-value=0.0083 Score=53.53 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
No 406
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.28 E-value=0.0086 Score=53.86 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999875
No 407
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.28 E-value=0.011 Score=50.29 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 408
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.27 E-value=0.0093 Score=55.70 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 409
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.27 E-value=0.0091 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 379999999999999999997543
No 410
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.27 E-value=0.0086 Score=56.29 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|..|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 411
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.23 E-value=0.0096 Score=51.87 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 412
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.23 E-value=0.0098 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998544
No 413
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.0086 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.16 E-value=0.01 Score=58.43 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998664
No 415
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.15 E-value=0.011 Score=54.98 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+|.++.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987654
No 416
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.14 E-value=0.0087 Score=55.39 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+|-++.|-|++||||||+.+.|+-.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987653
No 417
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.12 E-value=0.0099 Score=59.48 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-....++.|+|++||||||+.+.|+.-
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999999999999999763
No 418
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.12 E-value=0.0098 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 419
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.11 E-value=0.01 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4799999999999999888764
No 420
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.10 E-value=0.0025 Score=60.76 Aligned_cols=42 Identities=7% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
++.++++|| ...|++..+..+.+.+.+.... ..+|++|++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~-----------~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGV-----------TRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTT-----------EEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCC-----------ceEEEEeCchh
Confidence 468999999 7889998888888877765332 35667776554
No 421
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.10 E-value=0.01 Score=55.38 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|..|+|||||++.|.|-..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999998753
No 422
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.10 E-value=0.0093 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999863
No 423
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.08 E-value=0.011 Score=53.89 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997664
No 424
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.08 E-value=0.0066 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=9.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999988653
No 425
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.06 E-value=0.015 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 426
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.04 E-value=0.013 Score=53.63 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+|-++.+-|++||||||+++.|.-.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 427
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.03 E-value=0.013 Score=55.98 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=24.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
No 428
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.02 E-value=0.01 Score=52.09 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999999743
No 429
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.97 E-value=0.018 Score=68.18 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+++-|.||+|+|||||+..++.-
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999998877654
No 430
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.011 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999865
No 431
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.95 E-value=0.013 Score=57.63 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++.++.|+||+|||||||...|+--+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 566899999999999999999997663
No 432
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.93 E-value=0.013 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 433
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.92 E-value=0.01 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 434
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.91 E-value=0.013 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 435
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.91 E-value=0.012 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-.++|+|+.|+|||||++-++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999888653
No 436
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.86 E-value=0.015 Score=53.43 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=27.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
.+|.++.+-|+.||||||+.+.|+-.+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999987765 3433
No 437
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.78 E-value=0.015 Score=56.84 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999997653
No 438
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.78 E-value=0.016 Score=53.47 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+|-++.+.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987654
No 439
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.77 E-value=0.015 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
...-+.|.||+|+|||||.+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999998743
No 440
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.75 E-value=0.0047 Score=67.12 Aligned_cols=44 Identities=27% Similarity=0.426 Sum_probs=35.6
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 110 vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
.++.+.+++.+.|+||+|+|||||.++|++... .+-+.+++.++
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 547 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHh
Confidence 356778999999999999999999999999874 34566666554
No 441
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.74 E-value=0.016 Score=56.54 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.74 E-value=0.021 Score=51.24 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
+++|+++.|.|+.|+|||||.--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999976554
No 443
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.73 E-value=0.0096 Score=55.18 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++-+++|.|+.||||||+.+.|+-.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
No 444
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.73 E-value=0.012 Score=59.29 Aligned_cols=22 Identities=50% Similarity=0.708 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999883
No 445
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.72 E-value=0.0062 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 446
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.017 Score=52.26 Aligned_cols=22 Identities=50% Similarity=0.786 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 447
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.71 E-value=0.0062 Score=52.97 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=4.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998865
No 448
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.68 E-value=0.0034 Score=57.89 Aligned_cols=32 Identities=41% Similarity=0.678 Sum_probs=24.9
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+.++.+..+.| +.|.||+|+|||||++.|+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 33444455566 779999999999999999974
No 449
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.66 E-value=0.014 Score=51.33 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37999999999999999998653
No 450
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.64 E-value=0.0097 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
No 451
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.016 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 452
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.58 E-value=0.016 Score=51.23 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 588999999999999988875
No 453
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.51 E-value=0.018 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 454
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.45 E-value=0.017 Score=50.75 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 455
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.44 E-value=0.0044 Score=62.77 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
.+++|+|++|+||||++..|++.+......|.+-.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999999999998764434555543
No 456
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.31 E-value=0.022 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999998754
No 457
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.30 E-value=0.022 Score=48.03 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+.-+-|.||+|+|||++.+.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 455688999999999999999987654
No 458
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.18 E-value=0.025 Score=51.95 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.+..++.|+||.||||+|..+.|+--+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998543
No 459
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.14 E-value=0.025 Score=55.07 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..++.|+||+|||||||...|+--.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998665
No 460
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.13 E-value=0.018 Score=58.54 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
++.++.++|++|+||||++.-|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987653
No 461
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.12 E-value=0.043 Score=64.09 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+++-|.||+|+|||||...++.-
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999998777643
No 462
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.12 E-value=0.019 Score=54.80 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
No 463
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.88 E-value=0.035 Score=49.22 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCccHHHHH-HHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTIL-KIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLL-klI~Gl 140 (382)
+|.++.+.||.||||||++ +++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4889999999999999997 555443
No 464
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.88 E-value=0.037 Score=52.56 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG 146 (382)
+-.++++|.+|+|||||+|.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 346899999999999999999987644333
No 465
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.84 E-value=0.034 Score=50.32 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
|.+++|=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999997664
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.78 E-value=0.035 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.|+||.||||+|..+.|+--+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998543
No 467
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.78 E-value=0.034 Score=52.01 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999888765
No 468
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.81 E-value=0.012 Score=51.70 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988864
No 469
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.65 E-value=0.021 Score=50.71 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHH-HHcC
Q 016804 120 VGIIGPSGTGKSTILKI-IAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLkl-I~Gl 140 (382)
++|+|+.|+|||||++. +.|-
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5554
No 470
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.58 E-value=0.034 Score=54.18 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+.-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999987653
No 471
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.58 E-value=0.029 Score=56.15 Aligned_cols=22 Identities=50% Similarity=0.708 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 472
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.55 E-value=0.034 Score=55.99 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+++|.||+|||||||.+.|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 368999999999999999998654
No 473
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.54 E-value=0.035 Score=53.30 Aligned_cols=29 Identities=45% Similarity=0.551 Sum_probs=25.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
.+|..+.|.||.|+|||||.+.++..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34678999999999999999999987653
No 474
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.39 E-value=0.04 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
....+.|.||.|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3446889999999999999999875
No 475
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.37 E-value=0.027 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 476
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.36 E-value=0.039 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|.+++|||||++.|.|-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999864
No 477
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.31 E-value=0.048 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-.++|+|+.|+|||||++.+.+-.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999987763
No 478
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.29 E-value=0.041 Score=51.09 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.-+.|.||.|+|||||.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999866
No 479
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.24 E-value=0.039 Score=54.36 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++..++++|++|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999986
No 480
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.21 E-value=0.047 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+..+.|.||.|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998754
No 481
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.18 E-value=0.0075 Score=52.82 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 482
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.16 E-value=0.05 Score=52.28 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+..-+.|.||.|+|||||.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44568899999999999999999865
No 483
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.15 E-value=0.052 Score=50.98 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.|..+.|.||.|+|||||++.++.-.
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 36899999999999999999988643
No 484
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.12 E-value=0.055 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
No 485
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.11 E-value=0.065 Score=49.23 Aligned_cols=27 Identities=37% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+.-+.|.||+|+|||+|.+.|+....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 345688999999999999999998754
No 486
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.07 E-value=0.046 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.-+.|.||+|+||||+.+.|+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457799999999999999999876
No 487
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.00 E-value=0.096 Score=50.85 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.....+|+.-+++ .|.-+.|.|+||+|||||.-.+..
T Consensus 133 a~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 133 ATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred hhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3456788876666 688899999999999999877753
No 488
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=92.98 E-value=0.045 Score=56.90 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|..|+|||||++.|.|-.
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
No 489
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.96 E-value=0.055 Score=52.94 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=25.1
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+.++++---.++|+|.++||||||++.|++-
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 44455554446899999999999999999874
No 490
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.90 E-value=0.042 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++..++++|.+|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999863
No 491
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.84 E-value=0.054 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-.+||+||.||||||+.+.|+--
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999753
No 492
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.79 E-value=0.062 Score=52.28 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
....-+.|.||.|+|||||++.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.79 E-value=0.051 Score=54.97 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=28.7
Q ss_pred eeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 110 VSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 110 vsl~i~~Ge~--vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
+.-.+..|.+ +.|.||+|+|||||.++|+......-..+
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 3333444554 88999999999999999999876543433
No 494
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.78 E-value=0.063 Score=52.60 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.2
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
--+++|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3588899999999999999999999975
No 495
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.77 E-value=0.065 Score=51.16 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+..-+.|.||.|+|||||.+.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34458899999999999999998753
No 496
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.75 E-value=0.055 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+.|.||+|+|||||++.|+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 497
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.65 E-value=0.041 Score=56.06 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.|=.++|+|+.|+|||||++.|+|-
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445899999999999999999884
No 498
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.63 E-value=0.061 Score=57.00 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCE
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGR 153 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G~ 153 (382)
+|.++.|+|.+||||||+.+.|+-.+.. .-..+.++|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 4668999999999999999999875421 0124556654
No 499
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.60 E-value=0.059 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..+.|.||.|+|||+|.+.|+.-+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457788999999999999999765
No 500
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.56 E-value=0.062 Score=52.34 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHHHH---hcCCCCCCCCCcEEEEeCCC
Q 016804 225 SELSGGMKKRVALARSI---IFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL---~~~~~~~a~~P~iLLLDEPt 261 (382)
..+|+||+||.+|+|+| .++ .+++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~-----~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDK-----YKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHG-----GGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHH-----cCCCEEEeCCCC
Confidence 35999999999999999 541 259999999997
Done!