RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016805
(382 letters)
>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 131
Score = 123 bits (311), Expect = 3e-35
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 30/158 (18%)
Query: 112 PTMAIEKVLIANNTSVIQDEVLAHRLGLIPI-IVDPRLFEY--MSENDTSNEKNTIVFKL 168
PT+AI+ V + NT+V+ DE +AHRLGLIP+ +D EY + +K ++V L
Sbjct: 1 PTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTL 60
Query: 169 HVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
E V + +L + N + +P + +
Sbjct: 61 QAFGESESTT-NVYSKDLVIVSNLMG-----RNIGHPIIQDKEGN--------------- 99
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ I +L GQE++L A KGI K HAKW P
Sbjct: 100 ------GVLICKLRKGQELKLTCVAKKGIAKEHAKWGP 131
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 135
Score = 66.7 bits (163), Expect = 3e-14
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+V++ +KD+++F L +D A+AN+ RR++IAE+ + N
Sbjct: 3 GPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIAAAIEFEYDPWNKLK 54
Score = 59.8 bits (145), Expect = 9e-12
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 340 IRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ D F +ES G++ + + + L+ K ++ L+
Sbjct: 88 YKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALT 130
>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus
thermophilus [TaxId: 274]}
Length = 106
Score = 31.4 bits (71), Expect = 0.051
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 337 RVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
R+ R D I + G+++P +AV+IL +
Sbjct: 62 RLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILRE 97
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 29.0 bits (65), Expect = 0.28
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 337 RVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
RV R D + +E+ G + PE A IL +
Sbjct: 64 RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAE 99
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 85
Score = 27.3 bits (60), Expect = 0.88
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECL 328
+ CP E + ++ AC C +CL
Sbjct: 41 SQYCPTAAIFGEM----GEPHSIPHIEACINCGQCL 72
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId:
2288]}
Length = 103
Score = 27.1 bits (59), Expect = 1.7
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 293 VKTCPVNVFDIEDI---GSGKKRATVAQPRACTLCRECLR 329
+ CPVNVF D + +K+A +AC C C+
Sbjct: 52 INACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVN 91
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 27.5 bits (60), Expect = 2.4
Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 9/116 (7%)
Query: 142 IIVDPRLFEYMSENDTSNEKNTIV---------FKLHVLCERGGPRLTVKTNELKWLPNG 192
++ D R + YM + S N ++ ++ G ++ +++ L +
Sbjct: 10 VVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAWDNAGFKGYGIQIEQIRILKSP 69
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
E+ K + S P + LL +FS + + +A L Q+ +
Sbjct: 70 QEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFD 125
>d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein,
L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 26.7 bits (58), Expect = 2.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 215 FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
F + ++ + + +A L G IE+EA AV+G
Sbjct: 88 FGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIEAIAVQG 129
>d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium
thermocellum [TaxId: 1515]}
Length = 125
Score = 26.2 bits (57), Expect = 3.7
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 224 EFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
++ + P + +++L G IE+EA A+K
Sbjct: 94 KYFSEPYPARSCVEVSKLPKGVLIEIEAVAIK 125
>d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic
domain {Shigella flexneri 2a str. 2457T [TaxId:
198215]}
Length = 246
Score = 26.8 bits (58), Expect = 4.0
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 19 WDLPDVPQKLPPHIEFQRTRVQCNLDAPIHT 49
WD P P+ I ++ R++ + I T
Sbjct: 5 WDCPQAPEIPAKEIIWKSERLKNSRRVWIFT 35
>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda
constant domain, CL-lambda {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 25.3 bits (55), Expect = 5.4
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 185 ELKWLPNGSELPLETKPDSNPSSKPRTYTSFS 216
+ W + S + + + Y + S
Sbjct: 38 TVAWKADSSPVKAGVETTTPSKQSNNKYAASS 69
>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 101
Score = 25.2 bits (55), Expect = 6.9
Identities = 7/46 (15%), Positives = 18/46 (39%)
Query: 335 EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
E+R ++RR + + +GA + + + + E +
Sbjct: 19 ERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQ 64
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC
{Synechococcus elongatus [TaxId: 32046]}
Length = 80
Score = 24.7 bits (53), Expect = 7.3
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 293 VKTCPVNV--FDIEDIGSGKKRATVAQPRACTLCREC 327
V+ CP +V D + A+ + C C+ C
Sbjct: 17 VRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRC 53
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 218
Score = 25.8 bits (56), Expect = 8.2
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVK 255
S+ PI+ + ++ G+ +E A VK
Sbjct: 1 SHMPIQVLPPQLANQIAAGEVVERPASVVK 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,447,044
Number of extensions: 69355
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 16
Length of query: 382
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,213,086
Effective search space: 357860370
Effective search space used: 357860370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)