Query 016806
Match_columns 382
No_of_seqs 384 out of 2402
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 04:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.6 4.2E-16 1.4E-20 149.8 6.9 128 83-215 109-276 (367)
2 2lnd_A De novo designed protei 30.2 1E+02 0.0035 22.7 5.2 43 162-208 37-79 (112)
3 3p8k_A Hydrolase, carbon-nitro 23.2 75 0.0026 28.6 4.4 46 163-210 40-99 (281)
4 1unk_A Colicin E7; immunity pr 21.1 57 0.0019 24.4 2.5 49 163-211 35-85 (87)
5 1f89_A 32.5 kDa protein YLR351 19.5 98 0.0034 27.7 4.4 25 163-189 30-56 (291)
6 1fr2_A Colicin E9 immunity pro 16.3 85 0.0029 23.4 2.5 49 163-211 34-84 (86)
7 2e11_A Hydrolase; dimethylarse 15.7 1.4E+02 0.0049 26.2 4.4 34 177-210 34-80 (266)
8 2w1v_A Nitrilase-2, nitrilase 15.7 1E+02 0.0034 27.5 3.4 45 164-210 23-81 (276)
9 3ivz_A Nitrilase; alpha-beta s 15.7 94 0.0032 27.4 3.2 45 164-210 22-84 (262)
10 3hkx_A Amidase; alpha-beta-BET 13.0 1E+02 0.0035 27.7 2.6 46 163-210 40-100 (283)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.61 E-value=4.2e-16 Score=149.79 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=94.8
Q ss_pred cCeEEEEEe-c-------cCCCCCcEEEEecCCCCccHHHHHHHHHHcC--CCCceEEeecccccccchh---hHHHhhc
Q 016806 83 NRTTMVFSG-D-------IVPVEERVLLMANHRTEVDWMYVWDLALRKG--CLGYIKYILKSSLMKLPVF---GWGFHIL 149 (382)
Q Consensus 83 ~g~kv~v~G-e-------~~p~~~~~Iii~NH~S~~D~l~l~~l~~r~~--~~~~~~~v~K~~L~~~P~~---G~~~~~~ 149 (382)
.|.+ +.| + +++.++++|+++||||.+|.+++..++.+.+ ...++.||+|+++.+.|+. +++ +.+
T Consensus 109 ~~s~--V~G~e~~~~~~E~l~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g-~~l 185 (367)
T 1iuq_A 109 GNSF--VGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIG-RNL 185 (367)
T ss_dssp GGCE--EECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHT-SEE
T ss_pred cCCE--eecchhhhhHHhhccCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhh-hhe
Confidence 4555 667 3 4557899999999999999999988764211 0126899999999977776 544 446
Q ss_pred CceEe----e------cCCc-ccHHHHHHHHHhhcCCCCCceEEEecCCccCChh----hh------hhHH----HHHHH
Q 016806 150 EFISV----E------RNWE-IDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEE----KR------NRSQ----KFAAD 204 (382)
Q Consensus 150 g~i~v----~------R~~~-~d~~~i~~~l~~l~~~~~~~~llIFPEGTr~~~~----~~------~~s~----~~A~~ 204 (382)
++|+. + |++. .+.++++++.+.+++ .|..++|||||||..++ .. .|+. .+|.+
T Consensus 186 ~cI~~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~--GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~k 263 (367)
T 1iuq_A 186 ICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRG--GSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQH 263 (367)
T ss_dssp EECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHH--CCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHT
T ss_pred eeEEecccCCCcchhhhhhhHHHHHHHHHHHHHHHc--CCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHH
Confidence 67776 3 3322 345667777777774 47799999999999863 22 4666 99999
Q ss_pred cCCC--ccceEee
Q 016806 205 VGLP--VLTNVLL 215 (382)
Q Consensus 205 ~glP--vlp~~L~ 215 (382)
+|+| |+|+++.
T Consensus 264 sg~P~hIvPvaI~ 276 (367)
T 1iuq_A 264 SDVPGHLFPLALL 276 (367)
T ss_dssp SSSCEEEEEEEEE
T ss_pred cCCCceEEEEEEE
Confidence 9999 9999986
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.18 E-value=1e+02 Score=22.65 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCCCCceEEEecCCccCChhhhhhHHHHHHHcCCC
Q 016806 162 EHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLP 208 (382)
Q Consensus 162 ~~~i~~~l~~l~~~~~~~~llIFPEGTr~~~~~~~~s~~~A~~~glP 208 (382)
.+.+++.++..++ +|..+++|-.|..- ......+.-|++.|+.
T Consensus 37 sqdirdiiksmkd--ngkplvvfvngasq--ndvnefqneakkegvs 79 (112)
T 2lnd_A 37 SQDIRDIIKSMKD--NGKPLVVFVNGASQ--NDVNEFQNEAKKEGVS 79 (112)
T ss_dssp HHHHHHHHHHHTT--CCSCEEEEECSCCH--HHHHHHHHHHHHHTCE
T ss_pred hhhHHHHHHHHHh--cCCeEEEEecCccc--ccHHHHHHHHHhcCcc
Confidence 4678888888887 78889999999843 3334455557777754
No 3
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=23.18 E-value=75 Score=28.60 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCCCCCceEEEecCCccC--Ch------------hhhhhHHHHHHHcCCCcc
Q 016806 163 HVMRQMLSTFRNPNDPLWLTIFPEGTDF--TE------------EKRNRSQKFAADVGLPVL 210 (382)
Q Consensus 163 ~~i~~~l~~l~~~~~~~~llIFPEGTr~--~~------------~~~~~s~~~A~~~glPvl 210 (382)
+.+.+.++...+ .+--+++|||-.-. .. .......++|++.|+.++
T Consensus 40 ~~~~~~i~~A~~--~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv 99 (281)
T 3p8k_A 40 TQITQWFEKNMN--AEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIV 99 (281)
T ss_dssp HHHHHHHHHHCC--TTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHh--CCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEE
Confidence 344555555443 56679999997532 11 112345678888887654
No 4
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=21.12 E-value=57 Score=24.45 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCCCceEEEecCC-ccCCh-hhhhhHHHHHHHcCCCccc
Q 016806 163 HVMRQMLSTFRNPNDPLWLTIFPEG-TDFTE-EKRNRSQKFAADVGLPVLT 211 (382)
Q Consensus 163 ~~i~~~l~~l~~~~~~~~llIFPEG-Tr~~~-~~~~~s~~~A~~~glPvlp 211 (382)
..+......+-..++|.-|+.|||. -.-++ +-.+...++-+++|.|-++
T Consensus 35 d~lv~hF~~iteHP~gsDLIfYP~~~~edsPEgIv~~iKeWRa~nG~pgFK 85 (87)
T 1unk_A 35 DVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFK 85 (87)
T ss_dssp HHHHHHHHHHHCCTTTTHHHHSCCSSCCCSHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhcCCCCCCCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 4455556666678899999999984 33344 3447778888999999543
No 5
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=19.51 E-value=98 Score=27.74 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=15.8
Q ss_pred HHHHHHHHhh--cCCCCCceEEEecCCcc
Q 016806 163 HVMRQMLSTF--RNPNDPLWLTIFPEGTD 189 (382)
Q Consensus 163 ~~i~~~l~~l--~~~~~~~~llIFPEGTr 189 (382)
+.+.+.++.. .+ .+--+++|||...
T Consensus 30 ~~~~~~i~~a~~~~--~gadlvv~PE~~~ 56 (291)
T 1f89_A 30 QRAATFIERAMKEQ--PDTKLVVLPECFN 56 (291)
T ss_dssp HHHHHHHHHHHHHC--TTEEEEECCTTTT
T ss_pred HHHHHHHHHHhhcc--CCCeEEEcCCCcc
Confidence 3445555544 33 5667999999754
No 6
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=16.34 E-value=85 Score=23.40 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCCCceEEEecC-CccCChh-hhhhHHHHHHHcCCCccc
Q 016806 163 HVMRQMLSTFRNPNDPLWLTIFPE-GTDFTEE-KRNRSQKFAADVGLPVLT 211 (382)
Q Consensus 163 ~~i~~~l~~l~~~~~~~~llIFPE-GTr~~~~-~~~~s~~~A~~~glPvlp 211 (382)
..+...++.+-..++|.-|+.+|| |-..+++ -.....++-.++|.|-++
T Consensus 34 d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~~G~pgFK 84 (86)
T 1fr2_A 34 VKLVTHFAEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFK 84 (86)
T ss_dssp HHHHHHHHHHHCCTTTTHHHHSCCTTCCCSHHHHHHHHHHHHHHTTCCCCB
T ss_pred HHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 334444555556788888999997 3334444 346778888999999543
No 7
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=15.74 E-value=1.4e+02 Score=26.20 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=21.0
Q ss_pred CCceEEEecCCccC--Chh-----------hhhhHHHHHHHcCCCcc
Q 016806 177 DPLWLTIFPEGTDF--TEE-----------KRNRSQKFAADVGLPVL 210 (382)
Q Consensus 177 ~~~~llIFPEGTr~--~~~-----------~~~~s~~~A~~~glPvl 210 (382)
.+-.+++|||..-. ... ......++|++.|+.++
T Consensus 34 ~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~~~~~iv 80 (266)
T 2e11_A 34 GQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLGAAIT 80 (266)
T ss_dssp TTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHHHTSEEE
T ss_pred CCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHHhCCEEE
Confidence 45669999996432 111 11344677888887764
No 8
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=15.73 E-value=1e+02 Score=27.46 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCCCCceEEEecCCccC--Ch------------hhhhhHHHHHHHcCCCcc
Q 016806 164 VMRQMLSTFRNPNDPLWLTIFPEGTDF--TE------------EKRNRSQKFAADVGLPVL 210 (382)
Q Consensus 164 ~i~~~l~~l~~~~~~~~llIFPEGTr~--~~------------~~~~~s~~~A~~~glPvl 210 (382)
.+.+.++...+ .+--+++|||.... .. .......++|++.|+.++
T Consensus 23 ~~~~~i~~a~~--~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv 81 (276)
T 2w1v_A 23 RACSLVREAAK--QGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLI 81 (276)
T ss_dssp HHHHHHHHHHH--TTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHH--CCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEE
Confidence 34444444332 34569999997542 11 112344677888887654
No 9
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=15.70 E-value=94 Score=27.43 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCCCCceEEEecCCccC--Ch----------------hhhhhHHHHHHHcCCCcc
Q 016806 164 VMRQMLSTFRNPNDPLWLTIFPEGTDF--TE----------------EKRNRSQKFAADVGLPVL 210 (382)
Q Consensus 164 ~i~~~l~~l~~~~~~~~llIFPEGTr~--~~----------------~~~~~s~~~A~~~glPvl 210 (382)
.+.+.++...+ .+--+++|||-.-. .. .......++|++.|+.++
T Consensus 22 ~~~~~i~~A~~--~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv 84 (262)
T 3ivz_A 22 KAEKLIKEASK--QGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIV 84 (262)
T ss_dssp HHHHHHHHHHH--TTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHH--CCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEE
Confidence 34444444332 45569999996532 11 111344667888887654
No 10
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=13.00 E-value=1e+02 Score=27.71 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCCCCceEEEecCCccC--Chh-------------hhhhHHHHHHHcCCCcc
Q 016806 163 HVMRQMLSTFRNPNDPLWLTIFPEGTDF--TEE-------------KRNRSQKFAADVGLPVL 210 (382)
Q Consensus 163 ~~i~~~l~~l~~~~~~~~llIFPEGTr~--~~~-------------~~~~s~~~A~~~glPvl 210 (382)
+.+.+.++...+ .+.-+++|||-.-. ..+ ..+...++|++.|+.++
T Consensus 40 ~~~~~~i~~A~~--~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv 100 (283)
T 3hkx_A 40 DLIDDAAARASE--QGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALV 100 (283)
T ss_dssp HHHHHHHHHHHH--TTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHH--CCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHhCCEEE
Confidence 334444444432 45569999997542 111 11334667788776643
Done!