RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016806
(382 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.020
Identities = 49/401 (12%), Positives = 94/401 (23%), Gaps = 132/401 (32%)
Query: 49 AIILRMFSVHHCRKATSFLF--GLWLA---LWPFLFEKINRTTMVFSGD---IVPVE--E 98
A R ++ H L + L + + T F+ D P E
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 99 RVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERN- 157
+ L + E +G +L L EF E
Sbjct: 63 KFLGYVSSLVE------------PSKVGQFDQVLNLCLT------------EF---ENCY 95
Query: 158 -WEIDEH-VMRQMLSTFRNP--NDPLWLTIFPEG---TDFTEEKRNRSQKF-AADVGLPV 209
D H + ++L + + +K++ S F A G
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG--- 152
Query: 210 LTNVLLPKTRGFCL---------CLETLRNTLDAVYDMTIAYKNPCPSFMDNVFGV--DP 258
+ + E LR+ +Y Y + +
Sbjct: 153 -------NAQLVAIFGGQGNTDDYFEELRD----LYQT---YHVLVGDLIKFSAETLSEL 198
Query: 259 SEVHIHVRRIPVKEIPASETDAAAWLMDAFQLKD-----------------QL---LDKF 298
+ ++ + + + WL + D QL +
Sbjct: 199 IRTTLDAEKVFTQGL-----NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 299 NAQGHFPNQCQENELSTLKCLVNFI--VVIS--------LTAIFTYLT-LFSSIWYKIYV 347
G P + + + V I+ ++ +T LF ++
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-------FI 306
Query: 348 GLACTSLASVTYFNI--------------HPMLVV-GFSKA 373
G+ C T PML + ++
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Score = 35.0 bits (80), Expect = 0.041
Identities = 52/281 (18%), Positives = 87/281 (30%), Gaps = 100/281 (35%)
Query: 115 VWDLALR--KGCLGY-IKYILKSSLMKLPV-FG--WGFHILE--------------FISV 154
VW+ A K G+ I I+ ++ + L + FG G I E +
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 155 ERNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFT---------------EEK--RNR 197
+ EI+EH TFR+ L T FT + K
Sbjct: 1705 KIFKEINEHSTSY---TFRSEKGLLSA------TQFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 198 SQKFA-------------ADVGLPVLTNVLLPKTRGFCLCLETLRNTL-DAVYDMTIAYK 243
FA ADV + + + V + RG + + R+ L + Y M
Sbjct: 1756 DATFAGHSLGEYAALASLADV-MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM----- 1809
Query: 244 NPCPSFMDNVFGVDPSEVHIHVRRIPVKEIPASETDAAAWLMDAFQLKDQLLDKFNAQGH 303
++P V + ++ + WL++ +N
Sbjct: 1810 ----------IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN--------YNV--- 1848
Query: 304 FPNQCQ-----ENE-LSTLKCLVNF-----IVVISLTAIFT 333
NQ Q + L T+ ++NF I +I L +
Sbjct: 1849 -ENQ-QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 29.6 bits (66), Expect = 2.1
Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 54/138 (39%)
Query: 40 FLVYFAPIIAIILRMFSVHHCRKATSFLFGLWLALWPFLFEKINRTTMVFSG-DI-VPVE 97
FL +P F H + L A + + + + + F+ DI +PV
Sbjct: 420 FLPVASP--------F---H----SHLLVP---AS-DLINKDLVKNNVSFNAKDIQIPV- 459
Query: 98 ERVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGW----GF---HILE 150
+ T D DL R G I + +++LPV W F HIL+
Sbjct: 460 --------YDTF-DGS---DL--RVLS-GSISERIVDCIIRLPVK-WETTTQFKATHILD 503
Query: 151 F----IS-----VERNWE 159
F S RN +
Sbjct: 504 FGPGGASGLGVLTHRNKD 521
Score = 29.2 bits (65), Expect = 2.8
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 247 PSFMDNVFGVDPSEVHIHVRRIPVKEIPASE 277
PS M ++ + +V +V + +PA +
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTN-SHLPAGK 364
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.047
Identities = 43/338 (12%), Positives = 89/338 (26%), Gaps = 118/338 (34%)
Query: 101 LLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERNWEI 160
++M+ W L L K + ++ L + + ++ I E+
Sbjct: 54 IIMSKDAVSGTLRLFWTL-LSKQEEMV-QKFVEEVLR--INYKF---LMSPIKTEQR--- 103
Query: 161 DEHVMRQMLSTFRNP--NDPLWLTIFPEGTDFTEEKRN--RSQKFAADVGLPVLTNVLL- 215
+M +M R+ ND +F K N R Q + L LL
Sbjct: 104 QPSMMTRMYIEQRDRLYNDN---QVFA--------KYNVSRLQPYLK------LRQALLE 146
Query: 216 --PKTR-------GF---CLCLETLRNTL------DAVYDMTIAYKNP-----------C 246
P G + L+ + ++ + + N
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 247 ----PSFMDNVFGVDPSEVHIHVRRIPVKEIPASETDAAA----------WLMDAFQLKD 292
P++ ++ IH + ++ + S+ +AF L
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-- 264
Query: 293 QLLDKFNAQGHFPNQCQENELSTL-----KCLVNFIVVISLTAI--------FTY---LT 336
C+ L K + +F+ + T I T +
Sbjct: 265 --------------SCK-----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 337 LFSSIWYKIYVGLACTSLASVTYFNIHPMLVVGFSKAM 374
L Y+ L +P + ++++
Sbjct: 306 LLLK-----YLDCRPQDLPREV-LTTNPRRLSIIAESI 337
Score = 32.1 bits (72), Expect = 0.39
Identities = 35/256 (13%), Positives = 72/256 (28%), Gaps = 85/256 (33%)
Query: 111 DWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERNWEIDEHVMRQMLS 170
D + WD K++ L I+E S+ ++ R+M
Sbjct: 339 DGLATWD---------NWKHVNCDKLTT---------IIE-SSLN---VLEPAEYRKM-- 374
Query: 171 TFRNPNDPLWLTIFPEGT--------------------DFTEEKRNRS----QKFAADVG 206
F L++FP + S Q + +
Sbjct: 375 -FDR------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 207 LPVLTNVLLPKTRGFCLCLETLRNTLDAVYDMTIAYKN--PCPSFMDNVFGVDPSEVHI- 263
+P + L K L ++ Y++ + + P ++D F HI
Sbjct: 428 IPSIYLELKVKLEN----EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-----YSHIG 478
Query: 264 -HVRRIPVKEIPAS---------------ETDAAAWLMDAFQLKDQLLDKFNAQGHFPNQ 307
H++ I E D+ AW + + L + + +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-SILNTLQQLKFYKPYICDN 537
Query: 308 CQENELSTLKCLVNFI 323
+ E + +++F+
Sbjct: 538 DPKYE-RLVNAILDFL 552
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 32.9 bits (74), Expect = 0.19
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 23/118 (19%)
Query: 98 ERVLLMANHRTEVDWMYVWDLALRKG--CLGYIKYILKSSLMKLPV---FGWGFHILEFI 152
V+L++NH+TE D + L + ++ ++ P+ F G +++
Sbjct: 130 HNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVY 189
Query: 153 S----------VERNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQK 200
S E + + +++M R + +W I P G R+R
Sbjct: 190 SKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIW--IAPSGG------RDRPDP 239
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 30.2 bits (68), Expect = 1.1
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 162 EHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPV 209
E + ++++ + +F E F+ + + A GL V
Sbjct: 192 ETICQEIIPAAAEAGLADAVDVFCEHIGFSLAQTEQVYLAADQYGLAV 239
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 28.0 bits (62), Expect = 5.4
Identities = 18/96 (18%), Positives = 31/96 (32%)
Query: 114 YVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERNWEIDEHVMRQMLSTFR 173
Y D+ L + + +++ H RN + V+ L
Sbjct: 156 YGLDIETELKMLRVARRLETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGLEKAH 215
Query: 174 NPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPV 209
+ F EG F+ ++ +R A GLPV
Sbjct: 216 AEGLADAVDGFCEGIAFSVKEIDRVFAAAQQRGLPV 251
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314,
rhodococcus RHA1, structural genomics, PSI-2; HET: MSE;
2.05A {Rhodococcus SP}
Length = 209
Score = 27.2 bits (61), Expect = 8.2
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 284 LMDAFQLKDQLLDKFNAQGHFPNQCQE-NELSTLKCLV 320
L+DA + +D G P T + V
Sbjct: 108 LLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFV 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.142 0.461
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,011,322
Number of extensions: 350963
Number of successful extensions: 825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 18
Length of query: 382
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 287
Effective length of database: 4,049,298
Effective search space: 1162148526
Effective search space used: 1162148526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)