RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 016806
         (382 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 65.8 bits (160), Expect = 2e-12
 Identities = 25/234 (10%), Positives = 58/234 (24%), Gaps = 41/234 (17%)

Query: 94  VPVEERVLLMANHRTEVDWMYVWDLALRKGC--LGYIKYILKSSLMKLPVFGWGFHILEF 151
           +     V+L++NH+TE D   +  L  +          ++    ++  P+          
Sbjct: 126 LQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNL 185

Query: 152 ISVERNWEI-------------DEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRS 198
           I V     +             +   +++M    R       + I P G       R+R 
Sbjct: 186 ICVYSKKHMFDIPELTETKRKANTRSLKEMALLLR--GGSQLIWIAPSGG------RDRP 237

Query: 199 QKFAADVGLPVLTNVLLPKTRGFCLCLETLRNTLDAVYDMTIAYKNPCP---SFMDNVFG 255
                              +      L    +    ++ + +   +  P        +  
Sbjct: 238 D----PSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGE 293

Query: 256 VDP-----------SEVHIHVRRIPVKEIPASETDAAAWLMDAFQLKDQLLDKF 298
                          E+         K         +  L D+  ++  +L   
Sbjct: 294 KRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTA 347


>d1x71a1 b.60.1.1 (A:4-177) Neutrophil gelatinase-associated
           lipocalin (NGAL) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 174

 Score = 28.7 bits (63), Expect = 0.91
 Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 12/123 (9%)

Query: 108 TEVDWMYVWDLALRKGCLGYIKYIL----KSSLMKLPVFGWGFHILEFISVERNWEIDEH 163
            E     V  +  RK    Y         +     L            ++      +  +
Sbjct: 56  KEDKSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTLGNIKSYP----GLTSYLVRVVSTN 111

Query: 164 VMRQML---STFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPVLTNVLLPKTRG 220
             +  +          +   +T++    + T E +    +F+  +GLP   +++ P    
Sbjct: 112 YNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKSLGLPE-NHIVFPVPID 170

Query: 221 FCL 223
            C+
Sbjct: 171 QCI 173


>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
           molybdoprotein {Oligotropha carboxidovorans, formerly
           Pseudomonas carboxydovorans [TaxId: 40137]}
          Length = 663

 Score = 28.0 bits (61), Expect = 2.2
 Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 5/130 (3%)

Query: 253 VFGVDPSEVHIHVRRIP----VKEIPASETDAAAWLMDAFQLKDQL-LDKFNAQGHFPNQ 307
           + G+   ++H+    I      K    S    A        +  +   D+          
Sbjct: 106 ISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFA 165

Query: 308 CQENELSTLKCLVNFIVVISLTAIFTYLTLFSSIWYKIYVGLACTSLASVTYFNIHPMLV 367
              +  + L    +  ++     +      F +            ++ + +Y      L 
Sbjct: 166 RDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLA 225

Query: 368 VGFSKAMFCC 377
           V         
Sbjct: 226 VDGVYTNKAS 235


>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
          {Escherichia coli [TaxId: 562]}
          Length = 129

 Score = 26.8 bits (59), Expect = 2.6
 Identities = 12/79 (15%), Positives = 27/79 (34%)

Query: 1  MEECRPLKCDNRLKRRPLTPIRVFRGLICLLVFFFTAFMFLVYFAPIIAIILRMFSVHHC 60
          +++ RP+  D +  R P+T I      +  ++ F    + L      ++           
Sbjct: 5  VKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAI 64

Query: 61 RKATSFLFGLWLALWPFLF 79
            +    F +W  L    +
Sbjct: 65 MGSFFVKFIMWGILTALAY 83


>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 230

 Score = 26.9 bits (59), Expect = 4.1
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 12/139 (8%)

Query: 140 PVFGWGFHILEFISVERNWEIDEHVMRQMLSTF---RNPNDPLWLTIFPEGTDFTEEKR- 195
           P    G  +++ +    +  +D H+M                  +++  E +      R 
Sbjct: 51  PNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRT 110

Query: 196 -NRSQKFAADVGLPVLTNVLLPKTRGFCLCLETLRNTLDAVYDMTIAYKNPCPSFMDNVF 254
            N+ +   A  G+     VL P T      +E + + +D V  M++       SF+++  
Sbjct: 111 INQIKSLGAKAGV-----VLNPGTP--LTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQV 163

Query: 255 GVDPSEVHIHVRRIPVKEI 273
                   I   R     I
Sbjct: 164 KKISDLRKICAERGLNPWI 182


>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 217

 Score = 26.6 bits (58), Expect = 4.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 145 GFHILEFISVERNWEIDEHV 164
           G  I   +S E NW+I   +
Sbjct: 196 GVEIEGPLSTETNWDIAHMI 215


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.461 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,505,488
Number of extensions: 70440
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 12
Length of query: 382
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,213,086
Effective search space: 357860370
Effective search space used: 357860370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.7 bits)