Query 016807
Match_columns 382
No_of_seqs 232 out of 1567
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:59:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1230 CzcD Co/Zn/Cd efflux s 100.0 1.6E-55 3.5E-60 408.3 33.8 276 56-382 17-292 (296)
2 PRK03557 zinc transporter ZitB 100.0 3.3E-52 7.2E-57 398.4 36.1 273 59-382 17-290 (312)
3 KOG1482 Zn2+ transporter [Inor 100.0 7.3E-52 1.6E-56 386.0 26.2 313 39-382 52-364 (379)
4 COG0053 MMT1 Predicted Co/Zn/C 100.0 9.9E-51 2.1E-55 385.0 34.4 279 54-382 6-288 (304)
5 PRK09509 fieF ferrous iron eff 100.0 4.1E-50 8.9E-55 382.6 35.3 274 59-382 9-285 (299)
6 TIGR01297 CDF cation diffusion 100.0 5.8E-47 1.3E-51 356.1 29.7 261 73-382 2-266 (268)
7 KOG1484 Putative Zn2+ transpor 100.0 9.8E-46 2.1E-50 340.0 28.9 302 58-382 32-345 (354)
8 KOG1483 Zn2+ transporter ZNT1 100.0 8.3E-46 1.8E-50 346.5 16.8 320 60-382 8-368 (404)
9 PF01545 Cation_efflux: Cation 100.0 3.7E-45 8.1E-50 346.6 14.8 272 63-382 1-279 (284)
10 KOG1485 Mitochondrial Fe2+ tra 100.0 2.8E-39 6.1E-44 307.1 28.6 271 59-382 113-398 (412)
11 COG3965 Predicted Co/Zn/Cd cat 100.0 1.2E-26 2.5E-31 206.2 22.5 274 58-379 17-304 (314)
12 KOG2802 Membrane protein HUEL 99.9 2.6E-22 5.6E-27 186.2 15.3 255 58-381 204-502 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.2 1.3E-05 2.8E-10 76.6 11.8 91 61-159 121-211 (304)
14 TIGR01297 CDF cation diffusion 98.0 8.4E-05 1.8E-09 69.7 11.4 90 63-160 100-189 (268)
15 PRK09509 fieF ferrous iron eff 97.9 0.00011 2.4E-09 70.3 12.1 88 64-159 122-209 (299)
16 PRK03557 zinc transporter ZitB 97.1 0.005 1.1E-07 59.2 11.4 73 81-160 145-217 (312)
17 KOG1485 Mitochondrial Fe2+ tra 95.1 0.067 1.5E-06 52.4 7.4 86 65-158 235-320 (412)
18 COG1230 CzcD Co/Zn/Cd efflux s 94.8 0.33 7.1E-06 46.0 10.7 76 236-311 42-123 (296)
19 COG4858 Uncharacterized membra 90.3 8.5 0.00018 33.7 12.1 48 140-187 102-150 (226)
20 PF01545 Cation_efflux: Cation 89.5 0.44 9.5E-06 44.8 4.3 90 63-159 109-201 (284)
21 PF14535 AMP-binding_C_2: AMP- 87.0 4.5 9.7E-05 31.5 7.8 66 313-380 5-75 (96)
22 PLN02601 beta-carotene hydroxy 84.1 11 0.00023 35.1 9.8 60 132-191 99-160 (303)
23 PF02535 Zip: ZIP Zinc transpo 81.6 48 0.001 31.3 14.8 32 126-157 36-67 (317)
24 KOG1484 Putative Zn2+ transpor 79.3 14 0.00031 35.5 9.0 72 236-307 55-132 (354)
25 PF01883 DUF59: Domain of unkn 79.2 12 0.00026 27.1 7.1 65 315-379 2-72 (72)
26 PF03780 Asp23: Asp23 family; 78.9 12 0.00026 29.5 7.5 49 333-381 50-104 (108)
27 COG4956 Integral membrane prot 77.4 45 0.00098 31.8 11.6 38 273-310 106-143 (356)
28 PF09580 Spore_YhcN_YlaJ: Spor 76.5 12 0.00025 32.6 7.4 65 311-380 74-139 (177)
29 KOG1483 Zn2+ transporter ZNT1 76.2 11 0.00024 36.9 7.5 73 236-308 29-107 (404)
30 PRK10019 nickel/cobalt efflux 73.6 83 0.0018 29.7 15.1 29 127-155 85-113 (279)
31 PF07444 Ycf66_N: Ycf66 protei 72.6 40 0.00087 25.7 8.6 45 252-298 35-82 (84)
32 COG3696 Putative silver efflux 72.2 25 0.00054 38.5 9.5 68 314-381 579-656 (1027)
33 TIGR02945 SUF_assoc FeS assemb 63.8 58 0.0013 25.2 8.1 41 341-381 37-77 (99)
34 PF01037 AsnC_trans_reg: AsnC 62.7 22 0.00047 25.5 5.2 60 313-381 11-70 (74)
35 PF11381 DUF3185: Protein of u 59.0 33 0.00072 24.2 5.2 47 134-180 8-57 (59)
36 KOG1819 FYVE finger-containing 55.4 37 0.00081 34.3 6.7 38 252-291 655-692 (990)
37 PF06570 DUF1129: Protein of u 53.5 1.6E+02 0.0036 26.2 13.3 18 171-188 184-201 (206)
38 PF09877 DUF2104: Predicted me 53.5 44 0.00095 26.1 5.4 20 124-143 78-97 (99)
39 TIGR03406 FeS_long_SufT probab 51.5 1.1E+02 0.0023 26.8 8.3 69 313-381 74-153 (174)
40 TIGR02159 PA_CoA_Oxy4 phenylac 46.3 87 0.0019 26.5 6.8 42 339-381 23-64 (146)
41 TIGR00489 aEF-1_beta translati 45.5 1.4E+02 0.003 23.0 7.2 68 310-380 15-83 (88)
42 PRK02047 hypothetical protein; 45.4 1.1E+02 0.0023 23.6 6.7 60 312-375 28-88 (91)
43 cd04870 ACT_PSP_1 CT domains f 45.1 1.2E+02 0.0025 22.0 8.3 63 313-380 12-74 (75)
44 TIGR02898 spore_YhcN_YlaJ spor 44.5 1.3E+02 0.0028 25.8 7.6 64 313-380 55-120 (158)
45 PRK00907 hypothetical protein; 44.0 1.2E+02 0.0027 23.4 6.7 61 311-375 28-89 (92)
46 PRK11023 outer membrane lipopr 43.1 35 0.00076 30.2 4.1 68 304-380 81-148 (191)
47 PF02535 Zip: ZIP Zinc transpo 42.5 2.1E+02 0.0046 26.8 9.8 69 87-156 202-286 (317)
48 COG1279 Lysine efflux permease 42.4 1.1E+02 0.0023 27.4 6.9 60 241-303 34-94 (202)
49 PLN02159 Fe(2+) transport prot 42.4 3.3E+02 0.0072 26.5 15.4 31 127-157 80-110 (337)
50 PF10934 DUF2634: Protein of u 41.7 1E+02 0.0022 24.8 6.2 51 300-351 52-107 (112)
51 PRK10553 assembly protein for 41.3 1.6E+02 0.0035 22.5 7.1 58 312-379 17-74 (87)
52 PRK00435 ef1B elongation facto 39.7 1.5E+02 0.0033 22.7 6.6 67 310-380 15-83 (88)
53 KOG2877 sn-1,2-diacylglycerol 38.8 2.6E+02 0.0056 27.7 9.5 29 236-264 108-136 (389)
54 COG4035 Predicted membrane pro 38.4 21 0.00045 27.5 1.6 21 124-144 85-105 (108)
55 PF04455 Saccharop_dh_N: LOR/S 38.4 95 0.0021 24.6 5.4 71 310-380 14-84 (103)
56 PF03927 NapD: NapD protein; 37.8 1.5E+02 0.0033 22.1 6.3 57 312-379 15-71 (79)
57 PF11712 Vma12: Endoplasmic re 36.7 1.7E+02 0.0036 24.5 7.1 26 62-87 76-101 (142)
58 PF11654 DUF2665: Protein of u 35.3 31 0.00067 23.2 1.9 18 275-292 5-22 (47)
59 TIGR00439 ftsX putative protei 35.2 1.8E+02 0.004 27.8 8.0 71 308-378 75-162 (309)
60 PF04865 Baseplate_J: Baseplat 33.9 2E+02 0.0044 26.0 7.8 53 313-368 120-173 (243)
61 PRK05812 secD preprotein trans 33.3 5.3E+02 0.011 26.6 11.3 29 86-114 324-352 (498)
62 cd04869 ACT_GcvR_2 ACT domains 32.2 2E+02 0.0042 20.8 8.5 64 313-380 12-80 (81)
63 KOG1482 Zn2+ transporter [Inor 32.1 3.2E+02 0.007 26.9 8.9 73 236-308 93-171 (379)
64 PF00403 HMA: Heavy-metal-asso 31.6 90 0.002 21.4 4.0 46 313-366 12-58 (62)
65 PF01773 Nucleos_tra2_N: Na+ d 31.5 2.2E+02 0.0047 21.1 6.7 53 56-108 18-70 (75)
66 PF10002 DUF2243: Predicted me 31.1 3.3E+02 0.007 23.0 10.8 58 87-153 43-100 (143)
67 PF04972 BON: BON domain; Int 30.8 23 0.0005 24.8 0.8 29 304-332 30-58 (64)
68 COG4531 ZnuA ABC-type Zn2+ tra 30.7 33 0.00071 32.1 1.9 17 362-379 248-264 (318)
69 PRK11179 DNA-binding transcrip 30.6 1.8E+02 0.0039 24.5 6.4 61 312-381 81-141 (153)
70 PF07687 M20_dimer: Peptidase 30.2 83 0.0018 24.3 4.0 31 340-370 76-106 (111)
71 PRK11169 leucine-responsive tr 29.0 2.2E+02 0.0047 24.3 6.7 59 313-380 89-147 (164)
72 PF06796 NapE: Periplasmic nit 28.9 1.4E+02 0.003 20.9 4.3 11 54-64 12-22 (56)
73 PF13740 ACT_6: ACT domain; PD 28.8 2.3E+02 0.005 20.5 7.3 57 313-374 15-71 (76)
74 PRK11670 antiporter inner memb 27.8 3.2E+02 0.0069 26.9 8.4 68 314-381 14-87 (369)
75 cd06406 PB1_P67 A PB1 domain i 27.8 2.1E+02 0.0045 21.6 5.4 33 346-380 12-44 (80)
76 COG0581 PstA ABC-type phosphat 27.7 3.8E+02 0.0083 25.5 8.5 61 246-310 108-172 (292)
77 PRK11589 gcvR glycine cleavage 27.3 4.3E+02 0.0093 23.4 8.4 65 313-381 108-177 (190)
78 PF06570 DUF1129: Protein of u 27.2 4.4E+02 0.0096 23.3 15.6 27 133-159 80-106 (206)
79 PRK04201 zinc transporter ZupT 27.1 5.1E+02 0.011 24.0 12.6 29 127-155 35-63 (265)
80 PF09685 Tic20: Tic20-like pro 26.8 3E+02 0.0064 21.2 7.8 30 94-123 75-104 (109)
81 COG2177 FtsX Cell division pro 26.8 3.4E+02 0.0075 25.9 8.2 27 305-331 65-91 (297)
82 PF03147 FDX-ACB: Ferredoxin-f 26.6 2.9E+02 0.0063 21.0 7.0 64 311-374 17-91 (94)
83 PRK02983 lysS lysyl-tRNA synth 26.0 1E+03 0.023 27.2 17.3 44 279-325 206-249 (1094)
84 PRK10263 DNA translocase FtsK; 25.9 1.1E+03 0.024 27.6 18.0 8 273-280 180-187 (1355)
85 PHA02568 J baseplate assembly 25.7 2.6E+02 0.0057 26.7 7.2 64 306-370 178-242 (300)
86 COG2215 ABC-type uncharacteriz 25.6 6E+02 0.013 24.3 16.8 13 63-75 54-66 (303)
87 PRK00341 hypothetical protein; 25.5 1.6E+02 0.0035 22.6 4.7 59 312-375 29-88 (91)
88 COG4858 Uncharacterized membra 25.4 4.8E+02 0.01 23.2 12.3 18 127-144 161-178 (226)
89 PF08002 DUF1697: Protein of u 24.7 2.5E+02 0.0054 23.3 6.1 51 313-374 20-70 (137)
90 PF07787 DUF1625: Protein of u 24.6 3.3E+02 0.0072 25.0 7.5 29 132-160 185-213 (248)
91 cd04871 ACT_PSP_2 ACT domains 24.5 1.9E+02 0.0041 21.7 4.9 36 342-380 48-83 (84)
92 PRK15127 multidrug efflux syst 24.4 3.1E+02 0.0067 31.2 8.5 57 311-369 55-112 (1049)
93 PF07290 DUF1449: Protein of u 24.0 5.2E+02 0.011 23.1 8.3 27 62-88 7-33 (202)
94 PRK10555 aminoglycoside/multid 23.9 3.2E+02 0.007 31.0 8.6 54 314-369 58-112 (1037)
95 PF05915 DUF872: Eukaryotic pr 23.7 3.6E+02 0.0077 21.8 6.6 45 133-177 43-89 (115)
96 MTH00140 COX2 cytochrome c oxi 23.5 4E+02 0.0086 24.2 7.7 29 119-147 52-80 (228)
97 cd00292 EF1B Elongation factor 23.3 3.4E+02 0.0075 20.7 6.8 66 311-380 16-83 (88)
98 COG4331 Predicted membrane pro 23.1 4.6E+02 0.01 22.2 7.1 46 66-114 112-157 (167)
99 PRK00701 manganese transport p 23.0 7.9E+02 0.017 24.8 17.7 61 123-184 163-232 (439)
100 PRK10263 DNA translocase FtsK; 22.9 1.1E+03 0.023 27.7 12.0 6 59-64 18-23 (1355)
101 cd04887 ACT_MalLac-Enz ACT_Mal 22.9 2.8E+02 0.006 19.5 5.7 56 313-374 12-67 (74)
102 PRK00106 hypothetical protein; 21.9 1.2E+02 0.0027 31.4 4.4 57 314-379 460-524 (535)
103 PRK10747 putative protoheme IX 21.8 1.2E+02 0.0026 30.0 4.2 51 107-157 16-67 (398)
104 KOG3491 Predicted membrane pro 21.4 1.9E+02 0.0041 20.3 3.8 33 114-154 28-60 (65)
105 COG4041 Predicted membrane pro 21.3 2.7E+02 0.0059 23.1 5.4 77 257-369 8-84 (171)
106 TIGR00540 hemY_coli hemY prote 20.7 1.3E+02 0.0028 29.8 4.2 50 108-157 17-67 (409)
107 PF02628 COX15-CtaA: Cytochrom 20.5 7.2E+02 0.016 23.4 14.8 58 59-116 95-155 (302)
108 cd02413 40S_S3_KH K homology R 20.4 3.5E+02 0.0077 20.2 5.6 65 316-381 6-72 (81)
109 PRK09577 multidrug efflux prot 20.4 4.3E+02 0.0094 29.9 8.7 47 317-369 65-111 (1032)
110 TIGR01129 secD protein-export 20.4 8.6E+02 0.019 24.2 11.3 29 86-114 239-267 (397)
111 PF02790 COX2_TM: Cytochrome C 20.1 3.6E+02 0.0077 19.7 7.7 32 116-147 50-81 (84)
No 1
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=408.27 Aligned_cols=276 Identities=33% Similarity=0.614 Sum_probs=261.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHH
Q 016807 56 RSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALV 135 (382)
Q Consensus 56 ~~~~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~ 135 (382)
+.+.+|++++++.+|+.++++|+++|+++||+||+||++||++|+++.++++++.++++|+++++|||||.|+|.+++|+
T Consensus 17 ~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~ 96 (296)
T COG1230 17 NPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFL 96 (296)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHH
Confidence 44558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 016807 136 SVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEG 215 (382)
Q Consensus 136 ~~~~l~~~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 215 (382)
++++++.+++++++|+++||++|.+ .+...|++++++|+++|+++++.+.++
T Consensus 97 nav~Li~~s~~I~~EAi~R~~~P~~-i~~~~ml~va~~GL~vN~~~a~ll~~~--------------------------- 148 (296)
T COG1230 97 NALLLIVVSLLILWEAIQRLLAPPP-IHYSGMLVVAIIGLVVNLVSALLLHKG--------------------------- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC-CCccchHHHHHHHHHHHHHHHHHhhCC---------------------------
Confidence 9999999999999999999999974 555899999999999999999999742
Q ss_pred cchhhhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhHH
Q 016807 216 EKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVP 295 (382)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~~D~l~~iii~~~i~~~~~~ 295 (382)
+.+|.|+|+.++|.++|+++|+++++++++++++ +|+|+||+++++++++++..+++
T Consensus 149 ----------------------~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~-~w~~~Dpi~si~i~~lil~~a~~ 205 (296)
T COG1230 149 ----------------------HEENLNMRGAYLHVLGDALGSVGVIIAAIVIRFT-GWSWLDPILSIVIALLILSSAWP 205 (296)
T ss_pred ----------------------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCccchHHHHHHHHHHHHHHHH
Confidence 2357899999999999999999999999999887 99999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCc
Q 016807 296 MLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIY 375 (382)
Q Consensus 296 ~~~~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~ 375 (382)
++|++..+|++.+|+..+.+++++.+.+.|||.+|||+|+|+++++...+++|+++++..+.+++.+++++++.++|++.
T Consensus 206 l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~~~~~~~~~~~~l~~~~~I~ 285 (296)
T COG1230 206 LLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSITGGEHALTLHVVVDEVADADAALDQIVRRLLEKYGIE 285 (296)
T ss_pred HHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecccCCCCCCceeEEEEEEecCccchHHHHHHHHHHHhhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999977777778999999999999999
Q ss_pred eeEEecC
Q 016807 376 HVTVQIE 382 (382)
Q Consensus 376 ~vtv~ve 382 (382)
|+|||+|
T Consensus 286 hvTiQ~e 292 (296)
T COG1230 286 HVTIQLE 292 (296)
T ss_pred eEEEEec
Confidence 9999997
No 2
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=3.3e-52 Score=398.44 Aligned_cols=273 Identities=34% Similarity=0.556 Sum_probs=253.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHH
Q 016807 59 SAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQ 138 (382)
Q Consensus 59 ~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~ 138 (382)
..|++++++++|++++++|+++|+++||+||++||+||+.|+++.++++++.+.++||+|++|||||+|+|+++++++++
T Consensus 17 ~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~ 96 (312)
T PRK03557 17 NARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAI 96 (312)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCcCcch
Q 016807 139 LIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKL 218 (382)
Q Consensus 139 ~l~~~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 218 (382)
+++++++++++||++++++|.+ .+..++++++++++++|.++++++++
T Consensus 97 ~l~~~~~~i~~eai~~l~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~------------------------------- 144 (312)
T PRK03557 97 ALVVITILIVWEAIERFRTPRP-VAGGMMMAIAVAGLLANILSFWLLHH------------------------------- 144 (312)
T ss_pred HHHHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHHHHHHHHHHHHhc-------------------------------
Confidence 9999999999999999998864 44566778888999999998887764
Q ss_pred hhhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhHHHHH
Q 016807 219 CAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLK 298 (382)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~~D~l~~iii~~~i~~~~~~~~~ 298 (382)
+++.+|.+++++++|+++|+++|+++++++++.+++ ||+|+||++++++++++++.+++++|
T Consensus 145 -----------------~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~~-g~~~~Dpi~~ilis~~i~~~~~~l~~ 206 (312)
T PRK03557 145 -----------------GSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWT-GWTPADPILSILVSVLVLRSAWRLLK 206 (312)
T ss_pred -----------------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 345567789999999999999999999998887765 89999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccHHHHHHHH-hcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCcee
Q 016807 299 TIFVILMERTPSEINVARLQRDL-ECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHV 377 (382)
Q Consensus 299 ~~~~~Ll~~~p~~~~~~~i~~~l-~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~v 377 (382)
+++..|+|++|++++.+++++.+ ++.|+|.+|+++|+|+.+ +++++++|++++++.+.+++.+++++++++++++.++
T Consensus 207 ~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G-~~~~v~~hv~v~~~~~~~~i~~~i~~~l~~~~~i~~v 285 (312)
T PRK03557 207 ESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVG-EKPVMTLHVQVIPPHDHDALLDRIQDYLMHHYQIEHA 285 (312)
T ss_pred HHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeC-CeEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999988899998887 679999999999999985 6788999999999888999999999999999999999
Q ss_pred EEecC
Q 016807 378 TVQIE 382 (382)
Q Consensus 378 tv~ve 382 (382)
|||+|
T Consensus 286 tIh~e 290 (312)
T PRK03557 286 TIQME 290 (312)
T ss_pred EEEec
Confidence 99997
No 3
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-52 Score=386.04 Aligned_cols=313 Identities=44% Similarity=0.750 Sum_probs=281.3
Q ss_pred CccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCC
Q 016807 39 SACIFSKQENNTLESTERSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNAT 118 (382)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~ 118 (382)
..|+++.+.......+ +....|+++++.++++.+++.|.++|+.+||+|+++||.|.+.|..+..++++++|.++||++
T Consensus 52 ~~c~~~~~~~~~~~~~-~~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~ 130 (379)
T KOG1482|consen 52 HHCHRHPDSCDSSDAK-RRAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPAT 130 (379)
T ss_pred cccccCCCCCccchhh-hhhhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCC
Confidence 3455554444443333 333679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 016807 119 SQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNH 198 (382)
Q Consensus 119 ~~~pfG~~r~E~l~~l~~~~~l~~~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 198 (382)
+|.+|||.|.|.++++++.+.+|++.+.+++++++|+++++.+.+..+|++++.+++++|.++.+++.+.. |+|+|+++
T Consensus 131 ~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~-h~h~H~~~ 209 (379)
T KOG1482|consen 131 KRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSG-HGHSHGGS 209 (379)
T ss_pred CceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCceeecceEEEEEeehhhhhhhhhhhhhcccC-CCCCCCCC
Confidence 99999999999999999999999999999999999999999889999999999999999999999887552 33333333
Q ss_pred CCCCCCCCCCCCCCCcCcchhhhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 016807 199 HIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVD 278 (382)
Q Consensus 199 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~~D 278 (382)
+.|+|.|++++ + .|.|+|+.+.|.+.|.++|+||++++.++|+.|+|.+.|
T Consensus 210 ~s~g~~h~~~~----------------------------~-~n~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P~~~i~D 260 (379)
T KOG1482|consen 210 HSHGHSHDHGE----------------------------E-LNLNVRAAFVHVLGDLIQSVGVLIAALIIYFKPEYKIAD 260 (379)
T ss_pred CCcCccccccc----------------------------c-cchHHHHHHHHHHHHHHHHHHHHhhheeEEecccceecC
Confidence 33333333221 0 378999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHH
Q 016807 279 LSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSS 358 (382)
Q Consensus 279 ~l~~iii~~~i~~~~~~~~~~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~ 358 (382)
|+++++++++++.+..+++|+.+.+||+.+|.+.+.+.+++.+..++||+.||++|+|.++.|+..+++|+.++++.+.+
T Consensus 261 pICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~~iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~ad~~ 340 (379)
T KOG1482|consen 261 PICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLLSIEGVKAVHDLHIWSITVGKVALSVHLAIDSEADAE 340 (379)
T ss_pred chhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHhhhcceeEEEEEEEEEEecCceEEEEEEeecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCceeEEecC
Q 016807 359 EILDKIRDYCQKTHRIYHVTVQIE 382 (382)
Q Consensus 359 ~i~~~i~~~l~~~~~v~~vtv~ve 382 (382)
++++++.++++++|++.++|||+|
T Consensus 341 ~vL~~~~~~i~~~~~~~~vTiQie 364 (379)
T KOG1482|consen 341 EVLDEARSLIKRRYGISHVTIQIE 364 (379)
T ss_pred HHHHHHHHHHHhhcceEEEEEEec
Confidence 999999999999999999999997
No 4
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-51 Score=384.95 Aligned_cols=279 Identities=22% Similarity=0.342 Sum_probs=264.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHH
Q 016807 54 TERSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGA 133 (382)
Q Consensus 54 ~~~~~~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~ 133 (382)
..++...+..+++++.|+++++.|+++|+++||.||+|||+|+++|+++.++.++++++|+||||++|||||+|+|++++
T Consensus 6 ~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~s 85 (304)
T COG0053 6 ERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLAS 85 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHH
Confidence 33445567778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016807 134 LVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHH 213 (382)
Q Consensus 134 l~~~~~l~~~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 213 (382)
++.++++++++++++++++.+++.|.+..++.++++++++++++|..++.+.++.
T Consensus 86 l~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~------------------------- 140 (304)
T COG0053 86 LIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRV------------------------- 140 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999888889999999999999999999998864
Q ss_pred cCcchhhhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhh
Q 016807 214 EGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTT 293 (382)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~~D~l~~iii~~~i~~~~ 293 (382)
+++.+|+.+.++++|.++|+++|++++++.+..++ ||+|+||+++++|+++|++.+
T Consensus 141 ----------------------~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~~--g~~~lD~i~a~~I~~~Il~~~ 196 (304)
T COG0053 141 ----------------------GKKTNSQALIADALHHRSDVLTSLAVLVGLLGSLL--GWPWLDPLAALLISLYILKTG 196 (304)
T ss_pred ----------------------HHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999884443 899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCH---HHHHHHHHHHHHh
Q 016807 294 VPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS---SEILDKIRDYCQK 370 (382)
Q Consensus 294 ~~~~~~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~---~~i~~~i~~~l~~ 370 (382)
++++|+++..|+|+.+|++..+++++.+.+.|||.++|++|.|+ .|+++++++|++++|+++. |+|.+++++++++
T Consensus 197 ~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~V~~v~~lr~R~-~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~ 275 (304)
T COG0053 197 FRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRK-SGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKK 275 (304)
T ss_pred HHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCcceeeecceeee-eCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 6778999999999999984 7899999999999
Q ss_pred hCC-CceeEEecC
Q 016807 371 THR-IYHVTVQIE 382 (382)
Q Consensus 371 ~~~-v~~vtv~ve 382 (382)
.++ +.+++||+|
T Consensus 276 ~~~~~~~v~Ihve 288 (304)
T COG0053 276 EFPKVADVTIHVE 288 (304)
T ss_pred hcCCCceEEEEec
Confidence 998 999999987
No 5
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=4.1e-50 Score=382.58 Aligned_cols=274 Identities=17% Similarity=0.221 Sum_probs=254.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHH
Q 016807 59 SAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQ 138 (382)
Q Consensus 59 ~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~ 138 (382)
..|..++++++|++++++|+++|+++||++|+|||+|++.|+++.++++++.+.++||+|++|||||+|+|++++++.++
T Consensus 9 ~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~ 88 (299)
T PRK09509 9 VSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSM 88 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCcCcch
Q 016807 139 LIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKL 218 (382)
Q Consensus 139 ~l~~~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 218 (382)
+++++++++++||++++++|.+..+..++++++++++++|.+++++.++.
T Consensus 89 ~l~~~~~~~~~esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~------------------------------ 138 (299)
T PRK09509 89 FISGSALFLFLTGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRWV------------------------------ 138 (299)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH------------------------------
Confidence 99999999999999999998876667777888999999999887777643
Q ss_pred hhhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhHHHHH
Q 016807 219 CAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLK 298 (382)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~~D~l~~iii~~~i~~~~~~~~~ 298 (382)
.++.+|++++++++|+++|+++|++++++.++.++ ||+|+||++++++++++++.+++++|
T Consensus 139 -----------------~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~~--g~~~~D~i~aiii~~~il~~~~~i~~ 199 (299)
T PRK09509 139 -----------------VRKTQSQAVRADMLHYQSDVMMNGAILLALGLSWY--GWHRADALFALGIGIYILYSALRMGY 199 (299)
T ss_pred -----------------HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999998888777654 89999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCH---HHHHHHHHHHHHhhCCCc
Q 016807 299 TIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS---SEILDKIRDYCQKTHRIY 375 (382)
Q Consensus 299 ~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~---~~i~~~i~~~l~~~~~v~ 375 (382)
++...|+|++||++..+++++.++++|+|.+++++|+|+.+ +++++++||+++++++. |++.+++|++++++++..
T Consensus 200 ~~~~~Ll~~~~~~~~~~~I~~~i~~~~~v~~v~~l~~~~~G-~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~ 278 (299)
T PRK09509 200 EAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSG-PTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGS 278 (299)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHhCCCCcCceeeeeEeeC-CeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999854 56789999999999874 689999999999999877
Q ss_pred eeEEecC
Q 016807 376 HVTVQIE 382 (382)
Q Consensus 376 ~vtv~ve 382 (382)
+++||+|
T Consensus 279 ~v~ihve 285 (299)
T PRK09509 279 DVIIHQD 285 (299)
T ss_pred EEEEEeC
Confidence 8999987
No 6
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=5.8e-47 Score=356.09 Aligned_cols=261 Identities=33% Similarity=0.601 Sum_probs=244.7
Q ss_pred HHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016807 73 AMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAV 152 (382)
Q Consensus 73 ~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~l~~~~~~~~~esi 152 (382)
++++|+++|+++||.+|++||+|++.|+++.++++++.+.++||||++|||||+|+|++++++.++++++++++++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCcCcchhhhhhhccccCCCC
Q 016807 153 DRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESN 232 (382)
Q Consensus 153 ~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (382)
+++++|+++++..++++++++++++|+++++++++.
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------------------------- 117 (268)
T TIGR01297 82 ERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRV-------------------------------------------- 117 (268)
T ss_pred HHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHHh--------------------------------------------
Confidence 999998766777888889999999999999888754
Q ss_pred CcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcc
Q 016807 233 SPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEI 312 (382)
Q Consensus 233 ~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~~D~l~~iii~~~i~~~~~~~~~~~~~~Ll~~~p~~~ 312 (382)
+++.+|+++++++.|+++|+++|++++++..+.++ +|+|+||++++++++++++.++++++++...|+|.+|+++
T Consensus 118 ---~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~--~~~~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~ 192 (268)
T TIGR01297 118 ---GHRLGSLALRAAALHVLSDALSSVGVLIGALLIYF--GWHWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEE 192 (268)
T ss_pred ---CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 56778999999999999999999999999988876 4889999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCH---HHHHHHHHHHHHhh-CCCceeEEecC
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS---SEILDKIRDYCQKT-HRIYHVTVQIE 382 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~---~~i~~~i~~~l~~~-~~v~~vtv~ve 382 (382)
..+++++.+++.|+|.+++++|+|+.+++++.+++|++++++++. |++.++++++++++ +++.++|||+|
T Consensus 193 ~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~e 266 (268)
T TIGR01297 193 DLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVE 266 (268)
T ss_pred cHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 999999999999999999999999987768999999999999985 68999999999877 57999999997
No 7
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-46 Score=340.03 Aligned_cols=302 Identities=29% Similarity=0.541 Sum_probs=258.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHH
Q 016807 58 KSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSV 137 (382)
Q Consensus 58 ~~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~ 137 (382)
+..|++...+++|+.++.+|+..|..+||++|++|++||++|+.+..+.+++..+++||++..||||++|.|++++|+++
T Consensus 32 ~~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~ 111 (354)
T KOG1484|consen 32 KDSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNG 111 (354)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHH
Confidence 44788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC-CCCCCCCC--------C
Q 016807 138 QLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHH-IGGHVHGD--------D 208 (382)
Q Consensus 138 ~~l~~~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~--------~ 208 (382)
+++.+.+++++.|+++|+++| ++......++++..++++|++..+.+.+.|.|.|+.+|++ ..+|.... +
T Consensus 112 vflvl~a~fi~~Es~eRl~~p-pei~t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~~ 190 (354)
T KOG1484|consen 112 VFLVLIAFFIFSESVERLFDP-PEIHTNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVWD 190 (354)
T ss_pred HHHHHHHHHHhHHHHHHhcCc-hhcCCceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhccccccccccc
Confidence 999999999999999999999 4677777788999999999999999988776665433322 22232211 0
Q ss_pred CCCCCcCcchhhhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHH
Q 016807 209 HGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAF 288 (382)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~~D~l~~iii~~~ 288 (382)
.|.+.+.. .....+.++.+.++|.++|+++|+|++++..++... ||.++||+|+++|+++
T Consensus 191 ~~~~~~~~-------------------i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~-gw~~aDpicsllIail 250 (354)
T KOG1484|consen 191 LHHHAHGH-------------------IHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLF-GWMIADPICSLLIAIL 250 (354)
T ss_pred cccccccc-------------------cCCcccccccchhHHHHHHHhcchHHHHHHHHHHhc-CccchhHHHHHHHHHH
Confidence 11111111 112233455688999999999999999999998875 9999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhcCCCCcccHHHHH---HHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHH
Q 016807 289 ALSTTVPMLKTIFVILMERTPSEINVARLQ---RDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIR 365 (382)
Q Consensus 289 i~~~~~~~~~~~~~~Ll~~~p~~~~~~~i~---~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~ 365 (382)
|+.+.+|++|++..+||+++||+. .+.+. +.+.+.+||.++.+.|+|+++.|.++.++|+.|..|.+.+.+.+++.
T Consensus 251 If~sv~PL~k~s~~iLLq~tPp~~-~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dade~~vl~~V~ 329 (354)
T KOG1484|consen 251 IFLSVLPLLKYSGKILLQRTPPHL-ENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDADEQSVLAHVT 329 (354)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhh-hhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCcchhHHHHHHH
Confidence 999999999999999999999875 33344 44455799999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceeEEecC
Q 016807 366 DYCQKTHRIYHVTVQIE 382 (382)
Q Consensus 366 ~~l~~~~~v~~vtv~ve 382 (382)
+++ +..+|.+.|||+|
T Consensus 330 ~~~-~~~gV~~ltvQv~ 345 (354)
T KOG1484|consen 330 RKL-EDAGVKDLTVQVE 345 (354)
T ss_pred HHH-HhcceeEEEEEEe
Confidence 988 4668999999986
No 8
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-46 Score=346.55 Aligned_cols=320 Identities=26% Similarity=0.483 Sum_probs=264.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHH
Q 016807 60 AIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQL 139 (382)
Q Consensus 60 ~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~ 139 (382)
+.++...+++.++|+++|++.|+.++|+||++|++||+.|+++.++++++++.+++.++.++||||.|.|.+++|++++|
T Consensus 8 ~~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~if 87 (404)
T KOG1483|consen 8 SLRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIF 87 (404)
T ss_pred ccceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHH
Confidence 56778889999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCCCC--CC--CC--CC
Q 016807 140 IWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACG-HNHHIGGHVHG--DD--HG--PH 212 (382)
Q Consensus 140 l~~~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~--~~--~~--~~ 212 (382)
+..+++.++.|+++|+++|.....+...+.+++++++.|.+.++.+.. |+|.|+| .|.|.|+-.++ .. .| .+
T Consensus 88 l~alc~~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lfhd-hg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~ 166 (404)
T KOG1483|consen 88 LTALCVSILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLFHD-HGHDHGHGVHGHSHGGMKGFIGLNLTHLHSH 166 (404)
T ss_pred HHHHHHHHHHHHHHhhcCCccccCceeeehhhHHHHHHHHHHhheeec-cCcccCCcCCCCCCCccccchhhhccCCchh
Confidence 999999999999999999998899999999999999999999877642 2222211 22222221111 00 00 00
Q ss_pred --Cc----C----------c-chhhhhhhc-c-ccCC------------CCCcchhhccchhhHHHHHHHHHHHHHHHHH
Q 016807 213 --HE----G----------E-KLCAATEEN-Q-TNLE------------SNSPIETKMLNINLQGAYLHVMADLIQSAGV 261 (382)
Q Consensus 213 --~~----~----------~-~~~~~~~~~-~-~~~~------------~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v 261 (382)
+. + + .+.+...+| + .+.. ......++.++.|+++.++|.+.|++.+++|
T Consensus 167 ~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~V 246 (404)
T KOG1483|consen 167 AIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSIIV 246 (404)
T ss_pred ccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccceEE
Confidence 00 0 0 011111122 0 0000 0111124567899999999999999999999
Q ss_pred HHHHHHHHhcCCC---cccchhhHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEEEe
Q 016807 262 MIAGLILWVKPGW---SIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAI 338 (382)
Q Consensus 262 lia~~l~~~~~~~---~~~D~l~~iii~~~i~~~~~~~~~~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~ 338 (382)
+++++++|++ +| .|+||+.++++..+++.++||++|++..+|||.+|...+.+.+++.+.++|||.+||++|+|++
T Consensus 247 i~~A~~v~~t-~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~~gv~~vh~lhvWqL 325 (404)
T KOG1483|consen 247 IVSALFVYKT-EYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTVPGVISVHDLHVWQL 325 (404)
T ss_pred EEEEEEEEec-ceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcCcceeeeeeeeeeee
Confidence 9999998886 44 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEecC
Q 016807 339 TVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQIE 382 (382)
Q Consensus 339 ~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ve 382 (382)
.+.++.+++||.++.....-+++++||+++ +.+||..+|||+|
T Consensus 326 ~~~r~IAt~Hi~~~~p~~~~~~a~~ir~~f-h~~GIhs~TiqPe 368 (404)
T KOG1483|consen 326 AGSRIIATIHIQIQNPKEYMKIAEKIRSYF-HDQGIHSTTIQPE 368 (404)
T ss_pred ccceEEEEEEEEecCcHHHHHHHHHHHHHH-HhcCCcceeeccc
Confidence 999999999999987666669999999999 6889999999997
No 9
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=3.7e-45 Score=346.55 Aligned_cols=272 Identities=29% Similarity=0.513 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHHHHH
Q 016807 63 LFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWL 142 (382)
Q Consensus 63 l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~l~~ 142 (382)
|++++++|++++++|+++|+++||.++++||+|++.|+++.++++++.+.+.||++++||||++|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCcCcchhhhh
Q 016807 143 ISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAAT 222 (382)
Q Consensus 143 ~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~ 222 (382)
++++++++++++++++.+...+.+++.++++++++|+++++++++.
T Consensus 81 ~~~~~~~~si~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~---------------------------------- 126 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPSPPGIVLIVALVSIIVNLLLAWYLRRV---------------------------------- 126 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSSTTTS-THHHHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred hHHHHHHHHhhcccccccchhhhhhhhhhhhhhhHHHHHHHHHhhc----------------------------------
Confidence 9999999999999999766666666667999999999999998853
Q ss_pred hhccccCCCCCcchhhcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cchhhHHHHHHHHHHhhHHHHHH
Q 016807 223 EENQTNLESNSPIETKML--NINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSI-VDLSCTLIFAAFALSTTVPMLKT 299 (382)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~--s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~-~D~l~~iii~~~i~~~~~~~~~~ 299 (382)
+++.+ ++++++.+.++++|.+.|++++++.++.++. ++.+ +||++++++++++++.+++++|+
T Consensus 127 -------------~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-~~~~~~D~v~~l~i~~~i~~~~~~~~~~ 192 (284)
T PF01545_consen 127 -------------GKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-PWFWYADPVASLLIALFILYSGYPLIKE 192 (284)
T ss_dssp -------------HHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--STS-SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------ccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-hcccccchhhhhHHHHHHhhhhhhchhh
Confidence 33344 8999999999999999999999998887775 4554 99999999999999999999999
Q ss_pred HHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCH---HHHHHHHHHHHHhhC-CCc
Q 016807 300 IFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS---SEILDKIRDYCQKTH-RIY 375 (382)
Q Consensus 300 ~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~---~~i~~~i~~~l~~~~-~v~ 375 (382)
+...|+|++|+++..+++++.+++.|+|.+++++|+|+.+.+++.+++++.++++++. +++.+++++.+++++ ++.
T Consensus 193 ~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~ 272 (284)
T PF01545_consen 193 SIRILLDASPDPELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIY 272 (284)
T ss_dssp HHHHHTT-SHHHHHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred hhcccccccccccchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcE
Confidence 9999999999999999999999999999999999999987768999999999999974 579999999999998 699
Q ss_pred eeEEecC
Q 016807 376 HVTVQIE 382 (382)
Q Consensus 376 ~vtv~ve 382 (382)
++|||+|
T Consensus 273 ~v~I~~~ 279 (284)
T PF01545_consen 273 DVTIHIE 279 (284)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999986
No 10
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-39 Score=307.14 Aligned_cols=271 Identities=13% Similarity=0.162 Sum_probs=237.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHH
Q 016807 59 SAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQ 138 (382)
Q Consensus 59 ~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~ 138 (382)
+.+..|+++++|+.+++.|.++|+.+||+|++||++|++.|+++.++.++.++.++||++.+||+|++|+|+++.++++.
T Consensus 113 ~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~ 192 (412)
T KOG1485|consen 113 ERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSV 192 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHH
Confidence 35666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC-------CC----CcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 016807 139 LIWLISGILVYEAVDRIVHKSP-------TV----NGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGD 207 (382)
Q Consensus 139 ~l~~~~~~~~~esi~~l~~~~~-------~~----~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 207 (382)
+|.+++..+++++++++..|.. +. ...+.+++++....+.+..+++|+
T Consensus 193 iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~--------------------- 251 (412)
T KOG1485|consen 193 IMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCA--------------------- 251 (412)
T ss_pred HHHHHHHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHH---------------------
Confidence 9999999999999999887321 11 112445555566666666666664
Q ss_pred CCCCCCcCcchhhhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHH
Q 016807 208 DHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAA 287 (382)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~~D~l~~iii~~ 287 (382)
.+.+|..+++.++|+++|+++|.++++|+.+..+. |+|+||++|+++++
T Consensus 252 -----------------------------~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~--~~~lDP~gailVS~ 300 (412)
T KOG1485|consen 252 -----------------------------IKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYY--NYWLDPIGAILVST 300 (412)
T ss_pred -----------------------------HhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh--hhcccchhhhhhhe
Confidence 45566889999999999999999999999998874 78999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhcCCCCcccHHHHHHHHhcc-cCccccceeEEEEeeCCeEEEEEEEEeCCCCCH---HHHHHH
Q 016807 288 FALSTTVPMLKTIFVILMERTPSEINVARLQRDLECI-KGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS---SEILDK 363 (382)
Q Consensus 288 ~i~~~~~~~~~~~~~~Ll~~~p~~~~~~~i~~~l~~~-~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~---~~i~~~ 363 (382)
+++++|.+...+++..|.|++.|++..+++.....+. +.+..++.++.+..+ ..+.++++++++++++. |++.+.
T Consensus 301 ~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g-~~~~Vev~ivl~~~~~l~~ah~i~E~ 379 (412)
T KOG1485|consen 301 YIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFG-SHYFVEVHIVLDEDLSLSVAHDIGET 379 (412)
T ss_pred ehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeeccc-ceEEEEEeeecCCCCccHHHHHHHHH
Confidence 9999999999999999999988888888887777655 589999999999864 57889999999999984 789999
Q ss_pred HHHHHHhhCCCceeEEecC
Q 016807 364 IRDYCQKTHRIYHVTVQIE 382 (382)
Q Consensus 364 i~~~l~~~~~v~~vtv~ve 382 (382)
+++.++....+.+++||+|
T Consensus 380 lq~~ie~l~ever~fvh~d 398 (412)
T KOG1485|consen 380 LQKKIELLPEVERAFVHID 398 (412)
T ss_pred HHHHHhhcchheeeeeecC
Confidence 9999988777999999986
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.2e-26 Score=206.17 Aligned_cols=274 Identities=15% Similarity=0.138 Sum_probs=231.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhc-CCCCCCCCcCchHHHHHHHHHH
Q 016807 58 KSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASG-WNATSQYSFGFNRFEILGALVS 136 (382)
Q Consensus 58 ~~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~-~~~~~~~pfG~~r~E~l~~l~~ 136 (382)
.+++.+.++++..++++...++.|+++||++++-||+.|+.|+....+++...++.. +|.+.|||||++-+|++.-.++
T Consensus 17 ~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~in 96 (314)
T COG3965 17 NEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAIN 96 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhc
Confidence 346778899999999999999999999999999999999999999999999999988 5666799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCcCc
Q 016807 137 VQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGE 216 (382)
Q Consensus 137 ~~~l~~~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 216 (382)
+.++.+++++-++.++..+++++.+..+...+.+++++...+...+|+.+|.
T Consensus 97 g~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~---------------------------- 148 (314)
T COG3965 97 GTLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRL---------------------------- 148 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhh----------------------------
Confidence 9999999999999999999999999999999999999999999999999865
Q ss_pred chhhhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CcccchhhHHHHHHHHH
Q 016807 217 KLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPG------WSIVDLSCTLIFAAFAL 290 (382)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~------~~~~D~l~~iii~~~i~ 290 (382)
+++.+|+.+.++...|+-|+..|.++++|.+..|...+ .+|+||+.-.+.+++++
T Consensus 149 -------------------nrr~~s~lIald~kqW~Mst~lS~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~I 209 (314)
T COG3965 149 -------------------NRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFI 209 (314)
T ss_pred -------------------hccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHhee
Confidence 77888999999999999999999999999998887432 25999999999999999
Q ss_pred HhhHHHHHHHHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCe-EEEEEEEEeCCCCCH------HHHHHH
Q 016807 291 STTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGK-LVLSCHVIAEPAVSS------SEILDK 363 (382)
Q Consensus 291 ~~~~~~~~~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~-~~v~v~i~v~~~~~~------~~i~~~ 363 (382)
..+++.++.+.++.+..+|+ +..+.++....+..+-....+.+.+-...|+ ..++++..+|++.++ ++|.++
T Consensus 210 plPlg~vk~al~eiLlmtP~-el~q~ies~~~~~v~k~~f~~~~~yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Irde 288 (314)
T COG3965 210 PLPLGTVKSALREILLMTPN-ELQQSIESHAHEIVEKYGFPSYHVYVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDE 288 (314)
T ss_pred eccHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhcCchHHHHHHHhccceEEEEEEEeCCccCCccchhHHHHHHH
Confidence 99999999999999999998 5577777666554333444444444223343 779999999988764 356666
Q ss_pred HHHHHHhhCCCceeEE
Q 016807 364 IRDYCQKTHRIYHVTV 379 (382)
Q Consensus 364 i~~~l~~~~~v~~vtv 379 (382)
+.+.+.....-..+||
T Consensus 289 i~~slg~~g~~rwltv 304 (314)
T COG3965 289 IGQSLGSLGYERWLTV 304 (314)
T ss_pred HHHHhhcCCcCceEEE
Confidence 6666654433333443
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.89 E-value=2.6e-22 Score=186.25 Aligned_cols=255 Identities=16% Similarity=0.177 Sum_probs=189.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHH
Q 016807 58 KSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSV 137 (382)
Q Consensus 58 ~~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~ 137 (382)
...|.+.+++++|++-+.+|..+++++||-+|+|+++||++|..++++..++++.|.+.||..|||||+++.++.+++++
T Consensus 204 ~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISg 283 (503)
T KOG2802|consen 204 GSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISG 283 (503)
T ss_pred CCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhc
Confidence 44667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCcCc
Q 016807 138 QLIWLISGIL-VYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGE 216 (382)
Q Consensus 138 ~~l~~~~~~~-~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 216 (382)
+-++.++..+ ++.+|..+++|+|.++-.|...+...+++.....+....+.
T Consensus 284 vGIfc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGasllvAi~e---------------------------- 335 (503)
T KOG2802|consen 284 VGIFCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGASLLVAINE---------------------------- 335 (503)
T ss_pred cceeeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcchHHHHHHHH----------------------------
Confidence 8877776664 89999999999998888888888888888877766554321
Q ss_pred chhhhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCcccchhhHHHHHHHHHHhhH
Q 016807 217 KLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWV--KPGWSIVDLSCTLIFAAFALSTTV 294 (382)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~--~~~~~~~D~l~~iii~~~i~~~~~ 294 (382)
+.+-..++++... ..-....+|..-. -.+.|+.+-.|+++|+..+.+ .+|.|+.|++++|+|+.++-..
T Consensus 336 -vkr~Ak~~gmSi~---dYV~~~~DPs~nv---Vl~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV-- 406 (503)
T KOG2802|consen 336 -VKRNAKAKGMSIY---DYVMESRDPSTNV---VLLEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV-- 406 (503)
T ss_pred -HHHHHHHcCCCHH---HHHhhcCCCcceE---EEecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH--
Confidence 0000001111000 0000111111111 235677777777777554433 2499999999999998876544
Q ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCH-----------------
Q 016807 295 PMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS----------------- 357 (382)
Q Consensus 295 ~~~~~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~----------------- 357 (382)
+-+++|++.-.++.|++....++.+|+.+-.
T Consensus 407 --------------------------------e~diyDvK~~diG~g~vRfKAE~DFdGr~vtrsYL~kqd~akml~e~~ 454 (503)
T KOG2802|consen 407 --------------------------------ENDIYDVKATDIGLGKVRFKAEVDFDGRVVTRSYLEKQDFAKMLQEIQ 454 (503)
T ss_pred --------------------------------HHhhhhccceeeccceeEEEEEeccCchhhHHHHHhHHHHHHHHHHHH
Confidence 1225667777788899888888999886521
Q ss_pred ----------------HHH-------HHHHHHHHHhhCC-CceeEEec
Q 016807 358 ----------------SEI-------LDKIRDYCQKTHR-IYHVTVQI 381 (382)
Q Consensus 358 ----------------~~i-------~~~i~~~l~~~~~-v~~vtv~v 381 (382)
++| .+++|..|++..| |.||.+++
T Consensus 455 ~~~~~e~le~fml~~GEnivd~lG~EvDRlEkel~~~~PeirHVDlEi 502 (503)
T KOG2802|consen 455 EVKTPEELETFMLKHGENIVDTLGAEVDRLEKELKKRNPEIRHVDLEI 502 (503)
T ss_pred hcCCHHHHHHHHHHcchHHHHHhhhHHHHHHHHHHHhCCCceeeeeec
Confidence 011 2788888888776 99998875
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.22 E-value=1.3e-05 Score=76.61 Aligned_cols=91 Identities=21% Similarity=0.170 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHHH
Q 016807 61 IKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLI 140 (382)
Q Consensus 61 ~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~l 140 (382)
....++++++..+...+.-.|-.+||.+|.||++|..+|+++++.+++++- +.. +|+..++++++++.++++
T Consensus 121 ~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~-------~g~~~lD~i~a~~I~~~I 192 (304)
T COG0053 121 GVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSL-------LGWPWLDPLAALLISLYI 192 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH-HHH-------hCcHHHHHHHHHHHHHHH
Confidence 334466788999999999999999999999999999999999999999999 443 789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 016807 141 WLISGILVYEAVDRIVHKS 159 (382)
Q Consensus 141 ~~~~~~~~~esi~~l~~~~ 159 (382)
+..++.++++++..|++..
T Consensus 193 l~~~~~~~~~s~~~L~d~~ 211 (304)
T COG0053 193 LKTGFRLFKESVNELMDAA 211 (304)
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 9999999999999999854
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=97.95 E-value=8.4e-05 Score=69.71 Aligned_cols=90 Identities=23% Similarity=0.262 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHHHHH
Q 016807 63 LFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWL 142 (382)
Q Consensus 63 l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~l~~ 142 (382)
...++++|++++..+.-.|...+|.++.+|+.|.+.|+++++..+.+...+. ||+.++|++++++.+++++.
T Consensus 100 ~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i~~ 171 (268)
T TIGR01297 100 AIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLILY 171 (268)
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHH
Confidence 3456778888888888888899999999999999999999999999988875 56889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 016807 143 ISGILVYEAVDRIVHKSP 160 (382)
Q Consensus 143 ~~~~~~~esi~~l~~~~~ 160 (382)
.++.++++++..+++..+
T Consensus 172 ~~~~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 172 TAFRLLKESINVLLDAAP 189 (268)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999998754
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=97.94 E-value=0.00011 Score=70.27 Aligned_cols=88 Identities=26% Similarity=0.236 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHHHHHH
Q 016807 64 FCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLI 143 (382)
Q Consensus 64 ~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~l~~~ 143 (382)
.+++++|+++...+...+...+|.++.+|+.|...|+++++..+.+...+. +|+..++++++++.+++++..
T Consensus 122 ~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~il~~ 193 (299)
T PRK09509 122 LVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYILYS 193 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777889999999999999999999999888888763 588899999999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 016807 144 SGILVYEAVDRIVHKS 159 (382)
Q Consensus 144 ~~~~~~esi~~l~~~~ 159 (382)
++.++++++..|++..
T Consensus 194 ~~~i~~~~~~~Ll~~~ 209 (299)
T PRK09509 194 ALRMGYEAVQSLLDRA 209 (299)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999999864
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.12 E-value=0.005 Score=59.19 Aligned_cols=73 Identities=22% Similarity=0.334 Sum_probs=62.2
Q ss_pred HhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 016807 81 GFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSP 160 (382)
Q Consensus 81 g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~l~~~~~~~~~esi~~l~~~~~ 160 (382)
+...+|.++.+|++|.+.|+++++..+++...... +|+..++++++++.+++++..++.++++++..|++..+
T Consensus 145 ~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p 217 (312)
T PRK03557 145 GSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAP 217 (312)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 33467899999999999999999998888766542 35556999999999999999999999999999997654
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=95.13 E-value=0.067 Score=52.38 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHHHHHHH
Q 016807 65 CLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLIS 144 (382)
Q Consensus 65 ~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~l~~~~ 144 (382)
+++......+.+-...+...+|-.+.|-|+|-.+|+++..++|++.+.+. |.+.-+.|+++++++.+++..+
T Consensus 235 i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~ii~t~ 306 (412)
T KOG1485|consen 235 IMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYIIYTG 306 (412)
T ss_pred ehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheehhhhh
Confidence 34455566666667778889999999999999999999999999999987 4557889999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 016807 145 GILVYEAVDRIVHK 158 (382)
Q Consensus 145 ~~~~~esi~~l~~~ 158 (382)
+.-..+++..|+..
T Consensus 307 ~~t~~~~i~~Lvg~ 320 (412)
T KOG1485|consen 307 GRTGLENIKELVGR 320 (412)
T ss_pred hHHHHHHHHHHhCC
Confidence 99999999999976
No 18
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=94.76 E-value=0.33 Score=46.03 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=66.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCcccchhhHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 016807 236 ETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWV------KPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTP 309 (382)
Q Consensus 236 ~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~------~~~~~~~D~l~~iii~~~i~~~~~~~~~~~~~~Ll~~~p 309 (382)
+-..+|..+.+++.|.++|+++-+..++|..+... ++||..+..+++++-+++++..+.-+++|++.-+....|
T Consensus 42 g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~ 121 (296)
T COG1230 42 GLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPP 121 (296)
T ss_pred HHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44678999999999999999999999888777632 348888999999999999999999999999999997665
Q ss_pred Cc
Q 016807 310 SE 311 (382)
Q Consensus 310 ~~ 311 (382)
.+
T Consensus 122 i~ 123 (296)
T COG1230 122 IH 123 (296)
T ss_pred CC
Confidence 43
No 19
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=90.28 E-value=8.5 Score=33.74 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcchH-HHHHHHHHHHHHHHHHHHhc
Q 016807 140 IWLISGILVYEAVDRIVHKSPTVNGQLM-FGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 140 l~~~~~~~~~esi~~l~~~~~~~~~~~~-~~i~~~~l~~~~~~~~~~~~ 187 (382)
++++++..+..++..++.......+... +..+++|-....++++|..|
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr 150 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYR 150 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4456777778899999876543333332 23455555555556666554
No 20
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=89.55 E-value=0.44 Score=44.80 Aligned_cols=90 Identities=19% Similarity=0.145 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc--hHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCch-HHHHHHHHHHHHH
Q 016807 63 LFCLIIFSLIAMVVEVVGGFKAN--SLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFN-RFEILGALVSVQL 139 (382)
Q Consensus 63 l~~~l~~n~~~~v~~~~~g~~s~--S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~-r~E~l~~l~~~~~ 139 (382)
..+++++|+++.....-.+-..+ |.++.+++.|.+.|.+..+..+++.....-. ++. -++++++++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHH
Confidence 34556666666665555555566 9999999999999999998888777765532 233 4899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 016807 140 IWLISGILVYEAVDRIVHKS 159 (382)
Q Consensus 140 l~~~~~~~~~esi~~l~~~~ 159 (382)
++..+.-++++++..++...
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~ 201 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDAS 201 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-S
T ss_pred Hhhhhhhchhhhhccccccc
Confidence 99999999999999999764
No 21
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=86.97 E-value=4.5 Score=31.49 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=48.8
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCC-----HHHHHHHHHHHHHhhCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS-----SSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~-----~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
...+|++.+.++|++..-..+.+.+- ++.=.+.+.+++.++.+ .+++.+++++.++...++. +.|+
T Consensus 5 fP~~Ie~vl~~~~~~~~~y~i~v~~~-~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~ 75 (96)
T PF14535_consen 5 FPSQIEEVLREFPEVSPEYQIVVTRE-GGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVE 75 (96)
T ss_dssp -HHHHHHHHCTSTTEEEEEEEEEEEE-TTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEE
T ss_pred CHHHHHHHHHhCcCCCCcEEEEEEcC-CCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEE
Confidence 45789999999999987777777753 45555888899998764 3578888999998888863 3443
No 22
>PLN02601 beta-carotene hydroxylase
Probab=84.10 E-value=11 Score=35.07 Aligned_cols=60 Identities=12% Similarity=-0.025 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcch--HHHHHHHHHHHHHHHHHHHhcCCCC
Q 016807 132 GALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQL--MFGVAAFGFLINIIMVTCIGHDHAH 191 (382)
Q Consensus 132 ~~l~~~~~l~~~~~~~~~esi~~l~~~~~~~~~~~--~~~i~~~~l~~~~~~~~~~~~~~~~ 191 (382)
++..+++.+..++...++--...-+++...+...+ .+.+.+.+++.....+++..++..|
T Consensus 99 aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf~Aw~aHKYvMH 160 (303)
T PLN02601 99 AAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEFWARWAHRALWH 160 (303)
T ss_pred HHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544433333344432222221 1123344556666667777666554
No 23
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=81.56 E-value=48 Score=31.31 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016807 126 NRFEILGALVSVQLIWLISGILVYEAVDRIVH 157 (382)
Q Consensus 126 ~r~E~l~~l~~~~~l~~~~~~~~~esi~~l~~ 157 (382)
..+..+-+|..|+++...-+-++-|++..+-+
T Consensus 36 ~~l~~~~~fa~GvlL~~a~~hLLPea~~~~~~ 67 (317)
T PF02535_consen 36 RILSLLNAFAAGVLLGTAFLHLLPEAIEALES 67 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhccccc
Confidence 34666777777887777777788888887743
No 24
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=79.34 E-value=14 Score=35.52 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=61.3
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCcccchhhHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 016807 236 ETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVK------PGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMER 307 (382)
Q Consensus 236 ~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~------~~~~~~D~l~~iii~~~i~~~~~~~~~~~~~~Ll~~ 307 (382)
+...++..+.+++.|..-|..+.+.-+.+..+..+. +|...+..+++..=+++....++.+++|++.-|++-
T Consensus 55 ~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~a~fi~~Es~eRl~~p 132 (354)
T KOG1484|consen 55 GSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLIAFFIFSESVERLFDP 132 (354)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence 445678889999999999999999888888876442 255578899999999999999999999999999984
No 25
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=79.22 E-value=12 Score=27.13 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHHHHhcc--c----CccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEE
Q 016807 315 ARLQRDLECI--K----GVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTV 379 (382)
Q Consensus 315 ~~i~~~l~~~--~----~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv 379 (382)
+++++.|.++ | .+.+..-++--.+.+|+..+++.+..+...-.+.+.+++++.++...++..|.|
T Consensus 2 ~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 2 QAVRDALKQVKDPELGKDIVELGMVRDISIEGGKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHTT-BETTTSSBTTTTTSEEEEEECTCEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred HHHHHHHhCCCCCCCCCCHHHcCCeeEEEEECCEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3455556553 2 133334444344556666555544333333356899999999987767888765
No 26
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=78.91 E-value=12 Score=29.45 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=31.9
Q ss_pred eEEEEeeCCeEEEEEEEEeCCCCCHH----HHHHHHHHHHHhhCC--CceeEEec
Q 016807 333 LHVWAITVGKLVLSCHVIAEPAVSSS----EILDKIRDYCQKTHR--IYHVTVQI 381 (382)
Q Consensus 333 l~~~~~~~~~~~v~v~i~v~~~~~~~----~i~~~i~~~l~~~~~--v~~vtv~v 381 (382)
+++..-.++.+.+++++.+..+.+.. ++.+++++.+++.-+ +..|.|++
T Consensus 50 v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V 104 (108)
T PF03780_consen 50 VKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHV 104 (108)
T ss_pred eEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEE
Confidence 45543215678899999999998865 455555555554444 66666665
No 27
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=77.44 E-value=45 Score=31.81 Aligned_cols=38 Identities=3% Similarity=-0.077 Sum_probs=33.9
Q ss_pred CCcccchhhHHHHHHHHHHhhHHHHHHHHHHHhcCCCC
Q 016807 273 GWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPS 310 (382)
Q Consensus 273 ~~~~~D~l~~iii~~~i~~~~~~~~~~~~~~Ll~~~p~ 310 (382)
+.|++-++.++++.+++.+.++.+.-....+++--.++
T Consensus 106 ~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~~~ 143 (356)
T COG4956 106 PIPFISTIIPVILTIILAYFGFQLADKKRDEFLRLLNP 143 (356)
T ss_pred CccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhcch
Confidence 77899999999999999999999998888888876654
No 28
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=76.47 E-value=12 Score=32.57 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=45.7
Q ss_pred cccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCC-CceeEEe
Q 016807 311 EINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHR-IYHVTVQ 380 (382)
Q Consensus 311 ~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~-v~~vtv~ 380 (382)
....+++.+.+.++||| .+..+-- .+...+|-+.+. ......+++.++|++.+++.++ +.+|.|-
T Consensus 74 ~~~a~~i~~~v~~~~~V---~~A~vvv-~~~~a~Vav~~~-~~~~~~~~i~~~V~~~v~~~~p~~~~V~Vs 139 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGV---EDATVVV-TDDNAYVAVDLD-FNRFNTKKIKKKVEKAVKSADPRIYNVYVS 139 (177)
T ss_pred HHHHHHHHHHHhcCCCc---eEEEEEE-ECCEEEEEEEec-ccccchhHHHHHHHHHHHHhCCCccEEEEE
Confidence 34556788888888877 5555542 456677777776 3355678999999999988765 6888774
No 29
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=76.18 E-value=11 Score=36.89 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=61.2
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCcccchhhHHHHHHHHHHhhHHHHHHHHHHHhcCC
Q 016807 236 ETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWV------KPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERT 308 (382)
Q Consensus 236 ~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~------~~~~~~~D~l~~iii~~~i~~~~~~~~~~~~~~Ll~~~ 308 (382)
+.-.++..+.++..|.++|.++-++++.+.=.... ++||...+.+++++-+++....-+.++.|+....+...
T Consensus 29 gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~EA~~R~I~p~ 107 (404)
T KOG1483|consen 29 GYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIEAIERIIEPH 107 (404)
T ss_pred hcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 44567889999999999999988888777544433 34899999999999999999999999999999988754
No 30
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=73.60 E-value=83 Score=29.74 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016807 127 RFEILGALVSVQLIWLISGILVYEAVDRI 155 (382)
Q Consensus 127 r~E~l~~l~~~~~l~~~~~~~~~esi~~l 155 (382)
+.+...-.+++++++.+++++++...++.
T Consensus 85 ~~~~~le~~S~~lii~lGl~ll~r~~r~~ 113 (279)
T PRK10019 85 SAEPWLQLISAVIIISTAFWMFWRTWRGE 113 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777766553
No 31
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=72.62 E-value=40 Score=25.69 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccchh---hHHHHHHHHHHhhHHHHH
Q 016807 252 MADLIQSAGVMIAGLILWVKPGWSIVDLS---CTLIFAAFALSTTVPMLK 298 (382)
Q Consensus 252 ~~D~~~s~~vlia~~l~~~~~~~~~~D~l---~~iii~~~i~~~~~~~~~ 298 (382)
..|.+-+...++.+++.++. +|. +||+ +-++.+..+++.+++.+|
T Consensus 35 d~D~~fs~vgLl~g~IL~~~-gwR-ldp~ll~~Q~l~~~~~i~f~~e~ir 82 (84)
T PF07444_consen 35 DYDIFFSSVGLLYGLILWFQ-GWR-LDPILLFGQMLLVGLLIFFGWETIR 82 (84)
T ss_pred hhhHHHHHHHHHHHHHHHHH-hhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666666666555554 774 8999 566667777777776554
No 32
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=72.20 E-value=25 Score=38.46 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=41.9
Q ss_pred HHHHHHHHhcccCccccceeEEEEee----CCeEEEEEEEEeCCC--C----CHHHHHHHHHHHHHhhCCCceeEEec
Q 016807 314 VARLQRDLECIKGVQTIHDLHVWAIT----VGKLVLSCHVIAEPA--V----SSSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 314 ~~~i~~~l~~~~~V~~v~~l~~~~~~----~~~~~v~v~i~v~~~--~----~~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
.+++++.++++|+|..|-.=--+.=+ .+-...+-.|.+.|. . +-+++.+++++.+++.+|+.....|+
T Consensus 579 ~~~~e~~ik~~PeV~~V~~k~GrAe~~tD~~~~n~~et~I~Lkp~~eW~~~~t~~~lie~l~~~~~~lpG~~~~~tqP 656 (1027)
T COG3696 579 LQAIERAIKKFPEVERVFGKTGRAETATDPAPLNMIETFIELKPQEEWKDKKTRDELIEELRKTLEQLPGLANSFTQP 656 (1027)
T ss_pred HHHHHHHHhcCcchheeeeccccCCCCCCCCCcccceeeEEecchhhCCCcccHHHHHHHHHHHHHhCCCcccccccc
Confidence 45678888888887665322111100 112346677777542 2 35789999999998888876555543
No 33
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=63.79 E-value=58 Score=25.19 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=27.7
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEec
Q 016807 341 GKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 341 ~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
+...+.+.+-.+...-.+.+.+.+++.+.+..++..+.|.+
T Consensus 37 ~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i 77 (99)
T TIGR02945 37 GHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVEL 77 (99)
T ss_pred CeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 55555555544444445678899999997767888787765
No 34
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=62.65 E-value=22 Score=25.46 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=38.4
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEec
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
..+++.+.+.+.|+|..++ .++| .+-+-+++.++ +..++.+-+.+.+.+..+|.++...+
T Consensus 11 ~~~~~~~~l~~~p~V~~~~-----~vtG-~~d~~~~v~~~---d~~~l~~~i~~~l~~~~gV~~~~t~i 70 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECY-----SVTG-EYDLILKVRAR---DMEELEEFIREKLRSIPGVRRTETSI 70 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEE-----EESS-SSSEEEEEEES---SHHHHHHHHHHTHHTSTTEEEEEEEE
T ss_pred hHHHHHHHHHcCCCEEEEE-----EEeC-CCCEEEEEEEC---CHHHHHHHHHHHhhcCCCEEEEEEEE
Confidence 4788999999999886554 4333 33334444554 45566566666677777887776543
No 35
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=59.05 E-value=33 Score=24.25 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHH
Q 016807 134 LVSVQLIWLISGIL---VYEAVDRIVHKSPTVNGQLMFGVAAFGFLINII 180 (382)
Q Consensus 134 l~~~~~l~~~~~~~---~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~ 180 (382)
++.++.+++.+... +.+.+.|++.++++....+.++-++++.++.+.
T Consensus 8 lv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl~ 57 (59)
T PF11381_consen 8 LVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGLF 57 (59)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHHh
Confidence 34455555555443 455677888888777777777777777776554
No 36
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=55.37 E-value=37 Score=34.27 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHH
Q 016807 252 MADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALS 291 (382)
Q Consensus 252 ~~D~~~s~~vlia~~l~~~~~~~~~~D~l~~iii~~~i~~ 291 (382)
-.|.+--+.|.++++.-.+. -.|.--+--++-+++++.
T Consensus 655 se~llhrlfvciagvadqlq--tnfasdirkilksvflmn 692 (990)
T KOG1819|consen 655 SEDLLHRLFVCIAGVADQLQ--TNFASDIRKILKSVFLMN 692 (990)
T ss_pred HHHHHHHHHHHHHhHHHHHh--hhhHHHHHHHHHHHHhhc
Confidence 35666666676776654442 223444444444444443
No 37
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=53.49 E-value=1.6e+02 Score=26.15 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 016807 171 AAFGFLINIIMVTCIGHD 188 (382)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~ 188 (382)
.++|.+.-.+.+++.+|+
T Consensus 184 iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 184 IIIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444445554444
No 38
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=53.45 E-value=44 Score=26.12 Aligned_cols=20 Identities=35% Similarity=0.688 Sum_probs=17.5
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 016807 124 GFNRFEILGALVSVQLIWLI 143 (382)
Q Consensus 124 G~~r~E~l~~l~~~~~l~~~ 143 (382)
||||.|...+++.+++++++
T Consensus 78 GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 78 GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred CCCeehhhhhHHHHHHHHHH
Confidence 89999999999988887764
No 39
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=51.47 E-value=1.1e+02 Score=26.82 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=40.3
Q ss_pred cHHHHHHHHhcc--cC----ccc---cceeEEEEeeCC--eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEec
Q 016807 313 NVARLQRDLECI--KG----VQT---IHDLHVWAITVG--KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 313 ~~~~i~~~l~~~--~~----V~~---v~~l~~~~~~~~--~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
..++|.+.++++ |+ +.+ |+++.+-....+ +..+.+.+..+...-...+.+.+++++++..++..+.|++
T Consensus 74 ~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 74 NEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred cHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 346677777664 32 222 344444321113 5555555544433334678899999998777898888875
No 40
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=46.34 E-value=87 Score=26.52 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=27.8
Q ss_pred eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEec
Q 016807 339 TVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 339 ~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
.+++..+++.+......-.+.+.+.+++.|++. |+..+.|++
T Consensus 23 ~gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i 64 (146)
T TIGR02159 23 DGGGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVST 64 (146)
T ss_pred ECCEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeE
Confidence 455655555554443333467889999999764 888787765
No 41
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=45.47 E-value=1.4e+02 Score=22.96 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHhc-ccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 310 SEINVARLQRDLEC-IKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 310 ~~~~~~~i~~~l~~-~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
++.+.+++.+.+++ .|+-..+.....--+.-|-..+.+.+.++++. --.+.+++.+++--+|+++.|.
T Consensus 15 ~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~---g~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 15 PDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAE---GGTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred CccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCC---cChHHHHHHHhcCCCccEEEEE
Confidence 34578888888876 45556667777767777777788888887663 1125556666555578877663
No 42
>PRK02047 hypothetical protein; Provisional
Probab=45.39 E-value=1.1e+02 Score=23.62 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=37.1
Q ss_pred ccHHHHHHHHhcccCccccceeEEEEeeCCeEE-EEEEEEeCCCCCHHHHHHHHHHHHHhhCCCc
Q 016807 312 INVARLQRDLECIKGVQTIHDLHVWAITVGKLV-LSCHVIAEPAVSSSEILDKIRDYCQKTHRIY 375 (382)
Q Consensus 312 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~-v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~ 375 (382)
...+.+.+.++.+..-.+-..+..+.-+.|+|. +++.+.+... +-++.+-+.|.+...|.
T Consensus 28 ~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~----eq~~~iY~~L~~~~~Vk 88 (91)
T PRK02047 28 EFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSR----EQLDNIYRALTGHPMVK 88 (91)
T ss_pred hHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCH----HHHHHHHHHHhhCCCEE
Confidence 345677777766543334456777776777775 7777776533 33466666676555553
No 43
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.12 E-value=1.2e+02 Score=22.00 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=43.8
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
.++++.+.+.+.. .++.+++.... .+.+...+.+.++++.+..++.+.++... ++.++ ++.++
T Consensus 12 iv~~vt~~la~~~--~nI~dl~~~~~-~~~f~~~~~v~~p~~~~~~~l~~~l~~l~-~~l~l-~i~~~ 74 (75)
T cd04870 12 LTSALTEVLAAHG--VRILDVGQAVI-HGRLSLGILVQIPDSADSEALLKDLLFKA-HELGL-QVRFE 74 (75)
T ss_pred HHHHHHHHHHHCC--CCEEecccEEE-cCeeEEEEEEEcCCCCCHHHHHHHHHHHH-HHcCc-eEEEe
Confidence 4677777776655 56777765554 46777888888888877888888887766 44554 45444
No 44
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=44.50 E-value=1.3e+02 Score=25.84 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=39.0
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCC-CHHHHHHHHHHHHHh-hCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAV-SSSEILDKIRDYCQK-THRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~-~~~~i~~~i~~~l~~-~~~v~~vtv~ 380 (382)
..++|.+.+.++|+| ++..+-- .++..+|-+.+.-+.+. ..+++..++.+.+++ .+.+.+|.|-
T Consensus 55 ~A~~Ia~~v~~v~~V---~dA~vvV-tg~~A~Vgv~~~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVs 120 (158)
T TIGR02898 55 VADEIASEAAKVKGV---KDATVVI-TGNYAYVGVDLTNGLEGSVTDELKEKVAETVKSTDNRIANVYVS 120 (158)
T ss_pred HHHHHHHHHhcCCCC---ceEEEEE-ECCEEEEEEEcCCCcchhhHHHHHHHHHHHHHhhCCCcceEEEE
Confidence 345566666777766 5556553 44555555543322222 256888999999988 4458888763
No 45
>PRK00907 hypothetical protein; Provisional
Probab=43.96 E-value=1.2e+02 Score=23.42 Aligned_cols=61 Identities=16% Similarity=0.030 Sum_probs=38.0
Q ss_pred cccHHHHHHHHhcccCccccceeEEEEeeCCeEE-EEEEEEeCCCCCHHHHHHHHHHHHHhhCCCc
Q 016807 311 EINVARLQRDLECIKGVQTIHDLHVWAITVGKLV-LSCHVIAEPAVSSSEILDKIRDYCQKTHRIY 375 (382)
Q Consensus 311 ~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~-v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~ 375 (382)
+...+.|.+.+++...-.+-..+..+..+.|+|. +++.|.+.+ ++-++.+-+.|.+...|.
T Consensus 28 ~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats----~eQld~iY~~L~~~~~Vk 89 (92)
T PRK00907 28 RGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAES----REQYDAAHQALRDHPEVK 89 (92)
T ss_pred hhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECC----HHHHHHHHHHHhhCCCEE
Confidence 3456777777766432234556666776777775 777776543 344577777776655553
No 46
>PRK11023 outer membrane lipoprotein; Provisional
Probab=43.09 E-value=35 Score=30.23 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=41.1
Q ss_pred HhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 304 LMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 304 Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
|.|..|.+...++..+.+++++||.+|++--. +.+.. .+....+...|..+++..|.....+....|+
T Consensus 81 L~G~V~~~~~k~~A~~ia~~v~GV~~V~N~l~--V~~~~-------~~~~~~~D~~It~kik~~L~~~~~v~~~~I~ 148 (191)
T PRK11023 81 LTGQSPNAELSERAKQIAMGVEGVNEVYNEIR--QGQPI-------GLGTASKDTWITTKVRSQLLTSDSVKSSNVK 148 (191)
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCceeecceee--ecccc-------ccccccCcHHHHHHHHHHHhcCCCCCcceEE
Confidence 55777877788889999999999988764321 11110 0111112235788888888766555444343
No 47
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=42.49 E-value=2.1e+02 Score=26.83 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=39.9
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHH----------------HHHHHHHHHHHHHHH
Q 016807 87 LAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALV----------------SVQLIWLISGILVYE 150 (382)
Q Consensus 87 ~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~----------------~~~~l~~~~~~~~~e 150 (382)
...++=.+|.+.+.++....+.....++|..-. +-+-++=..|+++++ .++++.+.+..+++-
T Consensus 202 ~~~~ai~~Hk~~e~~~~~~~l~~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv 280 (317)
T PF02535_consen 202 SLFIAIILHKIPEGFALGSILVKAGFSKRKALL-LLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYV 280 (317)
T ss_pred HHHHHHHHhHhHHHhhhhhhhhhhccccchhhH-HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888777766655543322 334444445544433 223344555555565
Q ss_pred HHHHhh
Q 016807 151 AVDRIV 156 (382)
Q Consensus 151 si~~l~ 156 (382)
++..++
T Consensus 281 ~~~ell 286 (317)
T PF02535_consen 281 AFVELL 286 (317)
T ss_pred HHHHHH
Confidence 666554
No 48
>COG1279 Lysine efflux permease [General function prediction only]
Probab=42.41 E-value=1.1e+02 Score=27.41 Aligned_cols=60 Identities=20% Similarity=0.068 Sum_probs=45.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCcccchhhHHHHHHHHHHhhHHHHHHHHHH
Q 016807 241 NINLQGAYLHVMADLIQSAGVMIA-GLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVI 303 (382)
Q Consensus 241 s~~l~a~~~~~~~D~~~s~~vlia-~~l~~~~~~~~~~D~l~~iii~~~i~~~~~~~~~~~~~~ 303 (382)
+-.+.......++|++-=...+.+ +.++. ..||+.++.-..-++++++.++..++++.+.
T Consensus 34 ~~~l~~~~~c~i~D~~Li~~gv~G~~~li~---~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~ 94 (202)
T COG1279 34 EYVLPIALLCAISDIVLISAGVFGVGALIA---KSPWLLLIVRWGGAAFLLYYGLLALKSAPRG 94 (202)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 556777788888887654433333 33322 5789999999999999999999999999984
No 49
>PLN02159 Fe(2+) transport protein
Probab=42.35 E-value=3.3e+02 Score=26.46 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016807 127 RFEILGALVSVQLIWLISGILVYEAVDRIVH 157 (382)
Q Consensus 127 r~E~l~~l~~~~~l~~~~~~~~~esi~~l~~ 157 (382)
.+..+-+|..|+++...-+-++-++.+.+-+
T Consensus 80 ~~~~~~~FagGV~Lat~flHLLp~a~e~l~~ 110 (337)
T PLN02159 80 IFTIVKCFASGIILGTGFMHVLPDSFEMLSS 110 (337)
T ss_pred HHHHHHHHhhhHhHHHHHHHhhhHHHHhhhc
Confidence 4556666777777776666688888887764
No 50
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=41.73 E-value=1e+02 Score=24.78 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=36.6
Q ss_pred HHHHHhcCCCCc-----ccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEe
Q 016807 300 IFVILMERTPSE-----INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIA 351 (382)
Q Consensus 300 ~~~~Ll~~~p~~-----~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v 351 (382)
-...|++...+. +..+.|+++|+..|.+.+|.++.+-. .++.+.++.+|..
T Consensus 52 ele~lig~~~~~~~~~sEi~r~I~EaL~~d~rI~~V~~f~f~~-~~~~l~v~f~V~t 107 (112)
T PF10934_consen 52 ELEDLIGKNYPREYVESEIEREIEEALLQDPRITSVENFSFEW-EGDSLYVSFTVTT 107 (112)
T ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEEEEE-ECCEEEEEEEEEE
Confidence 345677774333 23456888888899999999999954 6677777777654
No 51
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=41.26 E-value=1.6e+02 Score=22.52 Aligned_cols=58 Identities=17% Similarity=0.360 Sum_probs=39.0
Q ss_pred ccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEE
Q 016807 312 INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTV 379 (382)
Q Consensus 312 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv 379 (382)
+..+.+.+.+..+||+ ++|...-..|++++.+. ..+.+++.+.+.. ++...||..++.
T Consensus 17 e~~~~V~~~l~~ipg~----Evh~~d~~~GKiVVtiE-----~~~~~~~~~~i~~-I~~l~GVlsa~l 74 (87)
T PRK10553 17 ERISDISTQLNAFPGC----EVAVSDAPSGQLIVVVE-----AEDSETLLQTIES-VRNVEGVLAVSL 74 (87)
T ss_pred HHHHHHHHHHHcCCCc----EEEeecCCCCeEEEEEE-----eCChHHHHHHHHH-HHcCCCceEEEE
Confidence 3478899999999985 55554323478876663 3456677777755 666778776654
No 52
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=39.75 E-value=1.5e+02 Score=22.71 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=43.7
Q ss_pred CcccHHHHHHHHhcc-cCccccceeEEEEeeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 310 SEINVARLQRDLECI-KGVQTIHDLHVWAITVGKLVLSCHVIAEPA-VSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 310 ~~~~~~~i~~~l~~~-~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~-~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
++.+.+++.+.+++. ++-..+.....--++-|-..+.+.+.++++ -.. +.+++.+.+--+|+++.|.
T Consensus 15 ~e~Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~~t----d~lee~i~~~e~Vqsvei~ 83 (88)
T PRK00435 15 PEVDLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEEGGT----EPVEEAFANVEGVESVEVE 83 (88)
T ss_pred CCcCHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCCcCc----HHHHHHHhccCCCcEEEEE
Confidence 345788888888764 555566667766777776677787777665 223 4555556545567777663
No 53
>KOG2877 consensus sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid transport and metabolism]
Probab=38.85 E-value=2.6e+02 Score=27.69 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=19.8
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 016807 236 ETKMLNINLQGAYLHVMADLIQSAGVMIA 264 (382)
Q Consensus 236 ~~~~~s~~l~a~~~~~~~D~~~s~~vlia 264 (382)
+||.++..-.+...++=.|.+.++.+.++
T Consensus 108 ARRTnsSsPLGELFDHG~DS~stvf~~l~ 136 (389)
T KOG2877|consen 108 ARRTNSSSPLGELFDHGCDSISTVFVTLA 136 (389)
T ss_pred hccCCCCCCcHhhhcccchhHHHHHHHHH
Confidence 55666666667777888888877765554
No 54
>COG4035 Predicted membrane protein [Function unknown]
Probab=38.44 E-value=21 Score=27.48 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=16.1
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 016807 124 GFNRFEILGALVSVQLIWLIS 144 (382)
Q Consensus 124 G~~r~E~l~~l~~~~~l~~~~ 144 (382)
||||+|++.+-+.++++++.+
T Consensus 85 GYGR~Etv~Gt~LA~l~wL~~ 105 (108)
T COG4035 85 GYGRVETVVGTFLAVLLWLYF 105 (108)
T ss_pred CCceeehhHHHHHHHHHHHhh
Confidence 899999998866666666543
No 55
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=38.38 E-value=95 Score=24.64 Aligned_cols=71 Identities=14% Similarity=0.039 Sum_probs=48.1
Q ss_pred CcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 310 SEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 310 ~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
++-.+.++-..++...|-..+.++.+-+.....-.+.+.|.-+.....++|++++++.-.......++...
T Consensus 14 DSgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~~~~~~d~~l~ 84 (103)
T PF04455_consen 14 DSGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAVPVEPQDAELE 84 (103)
T ss_dssp TSSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHHSCCCCEEEEC
T ss_pred chhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCCCCCCcccEEE
Confidence 34467888888999998888888888765444456777777776666789999998876554445666543
No 56
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=37.81 E-value=1.5e+02 Score=22.06 Aligned_cols=57 Identities=25% Similarity=0.344 Sum_probs=39.2
Q ss_pred ccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEE
Q 016807 312 INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTV 379 (382)
Q Consensus 312 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv 379 (382)
+..+.+.+.+..+||+ ++|... ..|++++.+. ..+.+++.+.+.. ++...||..++.
T Consensus 15 ~~~~~v~~~l~~~~gv----EVh~~~-~~GKiVVtiE-----~~~~~~~~~~~~~-i~~l~GVlsa~l 71 (79)
T PF03927_consen 15 ERLEEVAEALAAIPGV----EVHAVD-EDGKIVVTIE-----AESSEEEVDLIDA-INALPGVLSASL 71 (79)
T ss_dssp CCHHHHHHHHCCSTTE----EEEEEE-TTTEEEEEEE-----ESSHHHHHHHHHH-HCCSTTEEEEEE
T ss_pred hhHHHHHHHHHcCCCc----EEEeeC-CCCeEEEEEE-----eCChHHHHHHHHH-HHcCCCceEEEE
Confidence 4688999999999986 555443 2388877664 3356677676655 777778766654
No 57
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=36.72 E-value=1.7e+02 Score=24.46 Aligned_cols=26 Identities=15% Similarity=-0.074 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchH
Q 016807 62 KLFCLIIFSLIAMVVEVVGGFKANSL 87 (382)
Q Consensus 62 ~l~~~l~~n~~~~v~~~~~g~~s~S~ 87 (382)
+-.+++++|+++.++-..++.+..+.
T Consensus 76 ~~qls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 76 KRQLSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888887776655554433
No 58
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=35.28 E-value=31 Score=23.17 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=13.9
Q ss_pred cccchhhHHHHHHHHHHh
Q 016807 275 SIVDLSCTLIFAAFALST 292 (382)
Q Consensus 275 ~~~D~l~~iii~~~i~~~ 292 (382)
.++||+.+++++..-.+.
T Consensus 5 r~lDP~~av~iG~~ayyl 22 (47)
T PF11654_consen 5 RFLDPLFAVFIGTSAYYL 22 (47)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 479999999988765543
No 59
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=35.22 E-value=1.8e+02 Score=27.78 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=43.0
Q ss_pred CCCcccHHHHHHHHhcccCccccce---------eEEEEe--------eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHh
Q 016807 308 TPSEINVARLQRDLECIKGVQTIHD---------LHVWAI--------TVGKLVLSCHVIAEPAVSSSEILDKIRDYCQK 370 (382)
Q Consensus 308 ~p~~~~~~~i~~~l~~~~~V~~v~~---------l~~~~~--------~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~ 370 (382)
..+++..+++++.+++.|+|.++.- ++-|.- .++-+--.+.|.++++.+..+..+++++++++
T Consensus 75 ~~~~~~~~~l~~~l~~~~~V~~v~~iskeeAl~~l~~~~g~~~~l~~l~~nPLP~si~V~l~~~~~~~~~~~~l~~~l~~ 154 (309)
T TIGR00439 75 ALAQSDADTVVSLLTRDKGVENINYISREDGLAEFQSWSGFGNLLSMLDGNPLPAVFIVTPDPAFTPAEMQAILRDNITK 154 (309)
T ss_pred CCCHHHHHHHHHHHhCCCCccEEEEECHHHHHHHHHHhcCCchhhhhcccCCCCCeEEEEeCCCCChHHHHHHHHHHHhc
Confidence 3444556788888888888877632 222210 11112233555566555666777888888887
Q ss_pred hCCCceeE
Q 016807 371 THRIYHVT 378 (382)
Q Consensus 371 ~~~v~~vt 378 (382)
..+|.++.
T Consensus 155 ~~gV~~v~ 162 (309)
T TIGR00439 155 IPGVEEVR 162 (309)
T ss_pred CCCCCccc
Confidence 77777663
No 60
>PF04865 Baseplate_J: Baseplate J-like protein; InterPro: IPR006949 The temperate bacteriophage P2 has four defined tail genes: V, J, W and I. Their order is the late gene promoter, VWJI, followed by the tail fibre genes H and G and then a transcription terminator. BAP V protein is the small spike at the tip of the tail and basal plate assembly protein J lies at the edge of the baseplate []. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred.
Probab=33.85 E-value=2e+02 Score=26.04 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=36.5
Q ss_pred cHHHHHHHHhcc-cCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHH
Q 016807 313 NVARLQRDLECI-KGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYC 368 (382)
Q Consensus 313 ~~~~i~~~l~~~-~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l 368 (382)
....++..+++. |||.++.-+.-|. ++|. +.+.|.-+.+....++.+++++.|
T Consensus 120 t~~dy~~~a~~~~~gV~~v~v~~~~~-~~G~--V~v~v~~~~g~~~~~l~~~V~~~i 173 (243)
T PF04865_consen 120 TADDYEYWALSVSPGVADVKVYPNWN-GPGT--VDVYVLGANGAPSQELLAAVQAYI 173 (243)
T ss_pred CHHHHHHHHHHhCCCceEEEEecCCC-CCCE--EEEEEccCCCCCCHHHHHHHHHHh
Confidence 456778888888 8876666655554 4444 555555555556788899999999
No 61
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=33.31 E-value=5.3e+02 Score=26.59 Aligned_cols=29 Identities=7% Similarity=-0.055 Sum_probs=16.7
Q ss_pred hHHHHHhhhHHHHhHHHHHHHHHHHHHhc
Q 016807 86 SLAVMTDAAHLLTDIAGFSISLFAVWASG 114 (382)
Q Consensus 86 S~aLlaDa~hsl~D~~~~~i~l~~~~~s~ 114 (382)
+..+=.|++++..-+...++.++.+...-
T Consensus 324 gpslG~~~i~~~~~A~lig~ilV~i~m~~ 352 (498)
T PRK05812 324 GPSLGADSIRAGLIAGLIGLALVLLFMIL 352 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666555555543
No 62
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=32.21 E-value=2e+02 Score=20.81 Aligned_cols=64 Identities=9% Similarity=0.183 Sum_probs=42.4
Q ss_pred cHHHHHHHHhcccCccccceeEEEEee-----CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAIT-----VGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~-----~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
.+.++.+.+.+.. .++.+++..... .+.+...+.+.++++.+..++.+.++... +++++ ++.+|
T Consensus 12 iv~~it~~l~~~~--~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~-~~~~~-~~~~~ 80 (81)
T cd04869 12 IVHEVTQFLAQRN--INIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC-DDLNV-DISLE 80 (81)
T ss_pred HHHHHHHHHHHcC--CCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH-HHhcc-eEEec
Confidence 4677888776654 456666665433 14566788888887777888888888855 45564 35544
No 63
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=32.07 E-value=3.2e+02 Score=26.89 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=55.4
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCcccchhhHHHHHHHHHHhhHHHHHHHHHHHhcCC
Q 016807 236 ETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWV------KPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERT 308 (382)
Q Consensus 236 ~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~------~~~~~~~D~l~~iii~~~i~~~~~~~~~~~~~~Ll~~~ 308 (382)
+.+.+|..+..++.|.+.|..+=+..+.+..+... ++||.-+|.+++++=...+-.....++.+++.-++...
T Consensus 93 g~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~~ 171 (379)
T KOG1482|consen 93 GYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGD 171 (379)
T ss_pred CeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCc
Confidence 55778899999999999999888777777665433 23777789888876666666677778888888887654
No 64
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.59 E-value=90 Score=21.45 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=28.7
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCC-CCHHHHHHHHHH
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPA-VSSSEILDKIRD 366 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~-~~~~~i~~~i~~ 366 (382)
..+++++.+.++|||.+ +.+- ...+ .+.|..+++ .+.+++.+.|++
T Consensus 12 C~~~v~~~l~~~~GV~~---v~vd-~~~~----~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 12 CAKKVEKALSKLPGVKS---VKVD-LETK----TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp HHHHHHHHHHTSTTEEE---EEEE-TTTT----EEEEEESTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcE---EEEE-CCCC----EEEEEEecCCCCHHHHHHHHHH
Confidence 46789999999999844 4432 2333 334445555 466777777765
No 65
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=31.47 E-value=2.2e+02 Score=21.09 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=31.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHH
Q 016807 56 RSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLF 108 (382)
Q Consensus 56 ~~~~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~ 108 (382)
|+...|.+...+.+.++++..=+-...-..-..-++|++..+.|....+..++
T Consensus 18 k~I~wr~V~~gl~lQ~~la~~vl~~~~G~~~~~~i~~~~~~ll~~~~~G~~Fv 70 (75)
T PF01773_consen 18 KAIKWRTVIWGLGLQFVLALFVLKTPAGRDAFEWISDGFTALLDYANAGSSFV 70 (75)
T ss_dssp GG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 44456666677777666555443333333455667888888888777766543
No 66
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=31.06 E-value=3.3e+02 Score=23.02 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=39.9
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016807 87 LAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVD 153 (382)
Q Consensus 87 ~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~l~~~~~~~~~esi~ 153 (382)
..+++||+.-.+.-+..+..++-++.+.++.+..++ .....+.+++..+.+=++|++-
T Consensus 43 ~n~~~DGLFHa~~~~~~~~Gl~lL~r~~~r~~~~~~---------~~~~~g~~l~G~G~Fnl~dG~v 100 (143)
T PF10002_consen 43 LNLLSDGLFHAFTWVATVAGLFLLWRADRRRRRPWS---------GRRLWGGVLLGWGLFNLVDGVV 100 (143)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCcc---------chhhHHHHHHHhhHHHHHHHHH
Confidence 568999998888888888888888866554444333 3444555566667777777754
No 67
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=30.79 E-value=23 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=23.5
Q ss_pred HhcCCCCcccHHHHHHHHhcccCccccce
Q 016807 304 LMERTPSEINVARLQRDLECIKGVQTIHD 332 (382)
Q Consensus 304 Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~ 332 (382)
|.|..|..+..+.+.+.+.+++||..|.+
T Consensus 30 L~G~v~s~~~~~~a~~~a~~v~gv~~V~n 58 (64)
T PF04972_consen 30 LSGEVPSQEQRDAAERLARSVAGVREVVN 58 (64)
T ss_dssp EEEEESSCHHHHHHHHHHHCC-STSEEEE
T ss_pred EEeeCcHHHHHHhHHhhhccCCCcCEEEE
Confidence 56777888888999999999999988764
No 68
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=30.70 E-value=33 Score=32.15 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=7.2
Q ss_pred HHHHHHHHhhCCCceeEE
Q 016807 362 DKIRDYCQKTHRIYHVTV 379 (382)
Q Consensus 362 ~~i~~~l~~~~~v~~vtv 379 (382)
.+|+.+|+ +.+...|+-
T Consensus 248 ~~Ir~~l~-e~~a~CvFa 264 (318)
T COG4531 248 AEIRTQLK-EQKATCVFA 264 (318)
T ss_pred HHHHHHHH-HhCCcEEec
Confidence 44444442 334444443
No 69
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=30.59 E-value=1.8e+02 Score=24.47 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=37.6
Q ss_pred ccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEec
Q 016807 312 INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 312 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
...+++.+.+.+.|+|..+..+ + |.+-+-+.+.++ +.+++.+-+.+.+.+..+|.++..++
T Consensus 81 ~~~~~~~~~l~~~p~V~~~~~~-----t-G~~dl~~~v~~~---d~~~l~~~~~~~l~~~~gV~~~~t~i 141 (153)
T PRK11179 81 KDYPSALAKLESLDEVVEAYYT-----T-GHYSIFIKVMCR---SIDALQHVLINKIQTIDEIQSTETLI 141 (153)
T ss_pred ccHHHHHHHHhCCCCEEEEEEc-----c-cCCCEEEEEEEC---CHHHHHHHHHHHhhcCCCeeeEEEEE
Confidence 3467788889999987655433 3 344445555555 34455555666676666787665543
No 70
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=30.15 E-value=83 Score=24.26 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=26.7
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHh
Q 016807 340 VGKLVLSCHVIAEPAVSSSEILDKIRDYCQK 370 (382)
Q Consensus 340 ~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~ 370 (382)
++++.+.+++.+.|..+.+++.+++++.+++
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 5678899999999999999999999988865
No 71
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=28.96 E-value=2.2e+02 Score=24.30 Aligned_cols=59 Identities=5% Similarity=0.010 Sum_probs=35.5
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
..+++.+.+.+.|+|..++. ++| .+-+-+.+.++. .+++.+-+.+.+.+..+|.++..+
T Consensus 89 ~~~~~~~~l~~~p~V~~~~~-----vtG-~~d~~l~v~~~~---~~~l~~~l~~~l~~~~gV~~~~t~ 147 (164)
T PRK11169 89 VFEQFNAAVQKLEEIQECHL-----VSG-DFDYLLKTRVPD---MSAYRKLLGETLLRLPGVNDTRTY 147 (164)
T ss_pred HHHHHHHHHhcCcceeeeee-----ecC-CCCEEEEEEECC---HHHHHHHHHHHhhcCCCeeeEEEE
Confidence 46778888999998876663 333 333344444443 344444455666666678776654
No 72
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=28.86 E-value=1.4e+02 Score=20.94 Aligned_cols=11 Identities=0% Similarity=0.138 Sum_probs=4.5
Q ss_pred hhhhhhhhHHH
Q 016807 54 TERSKSAIKLF 64 (382)
Q Consensus 54 ~~~~~~~~~l~ 64 (382)
++|+.+.+...
T Consensus 12 ~~k~~E~~~fl 22 (56)
T PF06796_consen 12 STKRSELKAFL 22 (56)
T ss_pred chhHHHHHHHH
Confidence 33444444433
No 73
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=28.76 E-value=2.3e+02 Score=20.54 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=37.9
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRI 374 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v 374 (382)
....+.+.+.+.. .++.+.+...+ ++++...+.+.++++ +.+++.+.+++.. +++++
T Consensus 15 iv~~v~~~l~~~g--~ni~d~~~~~~-~~~f~~~~~v~~~~~-~~~~l~~~L~~l~-~~~~l 71 (76)
T PF13740_consen 15 IVAAVTGVLAEHG--CNIEDSRQAVL-GGRFTLIMLVSIPED-SLERLESALEELA-EELGL 71 (76)
T ss_dssp HHHHHHHHHHCTT---EEEEEEEEEE-TTEEEEEEEEEESHH-HHHHHHHHHHHHH-HHTT-
T ss_pred HHHHHHHHHHHCC--CcEEEEEEEEE-cCeEEEEEEEEeCcc-cHHHHHHHHHHHH-HHCCc
Confidence 4677778787765 56788888876 568888888988854 4555655555533 44553
No 74
>PRK11670 antiporter inner membrane protein; Provisional
Probab=27.83 E-value=3.2e+02 Score=26.88 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=38.4
Q ss_pred HHHHHHHHhcc--cC----ccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEec
Q 016807 314 VARLQRDLECI--KG----VQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 314 ~~~i~~~l~~~--~~----V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
.+++.+.+.++ |+ +.+..-++--.+.+++..+++.+..+.....+.+.+++++.+++..++..++|.+
T Consensus 14 ~~~v~~~l~~v~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (369)
T PRK11670 14 RAMVAGTLANFQHPTLKHNLTTLKALHHVALLDDTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKL 87 (369)
T ss_pred HHHHHHHHhcCCCCCCCCChhhhCCeeEEEEeCCEEEEEEEECCCCchHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 35666666553 32 2232223222334555555555443433334678899999998766787777654
No 75
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=27.81 E-value=2.1e+02 Score=21.62 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=25.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 346 SCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 346 ~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
.+-|.++++.+..++.++|.++|+- +-.+++++
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl--~~e~i~Ls 44 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLEL--PAEHITLS 44 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC--CchhcEEE
Confidence 7888999999999999999999943 22445443
No 76
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=27.74 E-value=3.8e+02 Score=25.51 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----CCCcccchhhHHHHHHHHHHhhHHHHHHHHHHHhcCCCC
Q 016807 246 GAYLHVMADLIQSAGVMIAGLILWVK----PGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPS 310 (382)
Q Consensus 246 a~~~~~~~D~~~s~~vlia~~l~~~~----~~~~~~D~l~~iii~~~i~~~~~~~~~~~~~~Ll~~~p~ 310 (382)
........|.+.++..++.++..+.. .|+.+-=..+++.++++++ |.+-.+..+-+...|+
T Consensus 108 t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~laGaLaLall~L----P~iirtteeaL~~VP~ 172 (292)
T COG0581 108 TKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALAGALALALLML----PVVIRTTEEALRAVPD 172 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCH
Confidence 44567788999998777665554321 1443333444555555555 4444455555555554
No 77
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=27.32 E-value=4.3e+02 Score=23.35 Aligned_cols=65 Identities=9% Similarity=0.175 Sum_probs=45.6
Q ss_pred cHHHHHHHHhcccCccccceeEEEEee---CC--eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEec
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAIT---VG--KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~---~~--~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
.+.++.+.+.+.. .++.+++....+ .+ .+.+.+.+.++++.+..++.+.+++.+ ++.++ +.++++
T Consensus 108 IV~~vT~~la~~~--iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~-~eL~v-d~~l~~ 177 (190)
T PRK11589 108 LIERFTALFDSHH--MNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALC-TELNA-QGSINV 177 (190)
T ss_pred HHHHHHHHHHHcC--CChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHH-HHhCc-eEEEEE
Confidence 4566777666554 678888887654 22 477899999999999888888888866 45554 455543
No 78
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.20 E-value=4.4e+02 Score=23.35 Aligned_cols=27 Identities=0% Similarity=-0.082 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 016807 133 ALVSVQLIWLISGILVYEAVDRIVHKS 159 (382)
Q Consensus 133 ~l~~~~~l~~~~~~~~~esi~~l~~~~ 159 (382)
-+..-..+++.+++.+..++..++++.
T Consensus 80 ~~~ld~~L~~~~if~~~~gi~~~f~~~ 106 (206)
T PF06570_consen 80 LMALDNSLLFFGIFSLLFGIMGFFSPK 106 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444556666777888888774
No 79
>PRK04201 zinc transporter ZupT; Provisional
Probab=27.09 E-value=5.1e+02 Score=24.00 Aligned_cols=29 Identities=3% Similarity=0.024 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016807 127 RFEILGALVSVQLIWLISGILVYEAVDRI 155 (382)
Q Consensus 127 r~E~l~~l~~~~~l~~~~~~~~~esi~~l 155 (382)
....+-+|..++++......++-|+.+.+
T Consensus 35 ~l~~~lafAaGvml~~~~~~LiPea~~~~ 63 (265)
T PRK04201 35 FLSFSLGFAAGVMLYVSFMEILPKALAAL 63 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777777777777777888888865
No 80
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=26.84 E-value=3e+02 Score=21.21 Aligned_cols=30 Identities=10% Similarity=0.208 Sum_probs=20.6
Q ss_pred hHHHHhHHHHHHHHHHHHHhcCCCCCCCCc
Q 016807 94 AHLLTDIAGFSISLFAVWASGWNATSQYSF 123 (382)
Q Consensus 94 ~hsl~D~~~~~i~l~~~~~s~~~~~~~~pf 123 (382)
+-.+.-++..+...++...+.+..+-+||+
T Consensus 75 ~~~~~~l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 75 LLIVLWLLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeeecCe
Confidence 333334555667777888888888888886
No 81
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=26.84 E-value=3.4e+02 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=20.7
Q ss_pred hcCCCCcccHHHHHHHHhcccCccccc
Q 016807 305 MERTPSEINVARLQRDLECIKGVQTIH 331 (382)
Q Consensus 305 l~~~p~~~~~~~i~~~l~~~~~V~~v~ 331 (382)
++..++++..+.+++.+++.|||.++.
T Consensus 65 L~~~~~~~~~~~v~~~i~~~~gV~~v~ 91 (297)
T COG2177 65 LQIDADQDDAALVREKIEGIPGVKSVR 91 (297)
T ss_pred EecCCChHHHHHHHHHHhcCCCcceEE
Confidence 455666667788999999999987763
No 82
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=26.61 E-value=2.9e+02 Score=21.02 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=39.6
Q ss_pred cccHHHHHHHHhcc--cCccccceeEEEEee---CCeEEEEEEEEeCCC-CC-----HHHHHHHHHHHHHhhCCC
Q 016807 311 EINVARLQRDLECI--KGVQTIHDLHVWAIT---VGKLVLSCHVIAEPA-VS-----SSEILDKIRDYCQKTHRI 374 (382)
Q Consensus 311 ~~~~~~i~~~l~~~--~~V~~v~~l~~~~~~---~~~~~v~v~i~v~~~-~~-----~~~i~~~i~~~l~~~~~v 374 (382)
+.....+.+.+++. +-+.++.-+-+|+-. .|+.-+...+...+. -+ ++++.+++...|++++|+
T Consensus 17 ~~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ev~~~~~~i~~~l~~~~~~ 91 (94)
T PF03147_consen 17 DVPFADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEEVNEIHDKIIKALEKKLGA 91 (94)
T ss_dssp TS-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHHTCT-
T ss_pred CCCHHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 34456677777664 346777777777632 356667777777653 22 357788888989888875
No 83
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=25.97 E-value=1e+03 Score=27.22 Aligned_cols=44 Identities=9% Similarity=-0.081 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcccHHHHHHHHhccc
Q 016807 279 LSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIK 325 (382)
Q Consensus 279 ~l~~iii~~~i~~~~~~~~~~~~~~Ll~~~p~~~~~~~i~~~l~~~~ 325 (382)
.+.+++.++.++...+.+++.....- ..+.++.+++++.+.+..
T Consensus 206 ~~~~~~~~~~l~~a~~~l~r~~~~~~---~~~~~d~~~~~~ll~~yG 249 (1094)
T PRK02983 206 ALLGLFGAAALIAALIVLFRSQRADN---ALTGEDELAIRGLLLLYG 249 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCc---CCCchhHHHHHHHHHHhC
Confidence 34444444445554454444322110 111234578888887754
No 84
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.92 E-value=1.1e+03 Score=27.56 Aligned_cols=8 Identities=50% Similarity=1.186 Sum_probs=4.2
Q ss_pred CCcccchh
Q 016807 273 GWSIVDLS 280 (382)
Q Consensus 273 ~~~~~D~l 280 (382)
++.|++.+
T Consensus 180 glSwlsIl 187 (1355)
T PRK10263 180 GWSWVTIA 187 (1355)
T ss_pred hhHHHHHH
Confidence 56655443
No 85
>PHA02568 J baseplate assembly protein; Provisional
Probab=25.66 E-value=2.6e+02 Score=26.65 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=38.7
Q ss_pred cCCCCcccHHHHHHHHhcccCcccc-ceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHh
Q 016807 306 ERTPSEINVARLQRDLECIKGVQTI-HDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQK 370 (382)
Q Consensus 306 ~~~p~~~~~~~i~~~l~~~~~V~~v-~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~ 370 (382)
+..|+++.++++++.+.. +++.-+ +.+.+..-..-.|-+++++.+.++.+.+.+.+.++..+++
T Consensus 178 ~G~ps~~Ll~~V~~~l~~-e~vrPl~d~VtV~sa~~v~~~I~a~l~l~~g~~~~~v~~~a~~~l~~ 242 (300)
T PHA02568 178 NGTASEDLLAAVRAALNR-EDVRPVTDRVTVQSATIVPYQIRATLYLYPGPDSEVILAAAEARLQA 242 (300)
T ss_pred CCCCCHHHHHHHHHHhcc-cccCCCCCEEEEECCEEEEEEEEEEEEEcCCCChHHHHHHHHHHHHH
Confidence 446788888888888833 333333 3344432222146688888888887776666555555543
No 86
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=25.56 E-value=6e+02 Score=24.29 Aligned_cols=13 Identities=31% Similarity=0.278 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 016807 63 LFCLIIFSLIAMV 75 (382)
Q Consensus 63 l~~~l~~n~~~~v 75 (382)
.|..+.+.+++.+
T Consensus 54 ~w~li~~SflyGv 66 (303)
T COG2215 54 GWTLIPLSFLYGV 66 (303)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 87
>PRK00341 hypothetical protein; Provisional
Probab=25.54 E-value=1.6e+02 Score=22.64 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=35.7
Q ss_pred ccHHHHHHHHhcccCccccceeEEEEeeCCeEE-EEEEEEeCCCCCHHHHHHHHHHHHHhhCCCc
Q 016807 312 INVARLQRDLECIKGVQTIHDLHVWAITVGKLV-LSCHVIAEPAVSSSEILDKIRDYCQKTHRIY 375 (382)
Q Consensus 312 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~-v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~ 375 (382)
...+.|.+.+++... .+...+..+.-+.|+|. +++.+.+... +-++.+-+.|.+...|.
T Consensus 29 ~~~~~V~~iv~~~~~-~~~~~~~~k~Ss~GkY~S~tv~i~~~s~----~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 29 GFKDLVIEILQKHAD-VDLSTLAERQSSNGKYTTVQLHIVATDE----DQLQDINSALRATGRVH 88 (91)
T ss_pred hHHHHHHHHHHHhCC-CcccceeeccCCCCEEEEEEEEEEECCH----HHHHHHHHHHhhCCCEE
Confidence 455677777765442 23455666666777775 7777776533 33466667776655554
No 88
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=25.39 E-value=4.8e+02 Score=23.15 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016807 127 RFEILGALVSVQLIWLIS 144 (382)
Q Consensus 127 r~E~l~~l~~~~~l~~~~ 144 (382)
.+.++.+...++++|+.-
T Consensus 161 ~~K~~lv~~~sm~lWi~v 178 (226)
T COG4858 161 TWKYLLVAVLSMLLWIAV 178 (226)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345556666666666443
No 89
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=24.70 E-value=2.5e+02 Score=23.33 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=35.7
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRI 374 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v 374 (382)
...++++.+++. +..+++.+ +..|.++.+ ++.+..++..+|++.|++.+|.
T Consensus 20 ~MaeLr~~l~~~----Gf~~V~Ty-i~SGNvvf~------~~~~~~~l~~~ie~~l~~~fG~ 70 (137)
T PF08002_consen 20 KMAELREALEDL----GFTNVRTY-IQSGNVVFE------SDRDPAELAAKIEKALEERFGF 70 (137)
T ss_dssp -HHHHHHHHHHC----T-EEEEEE-TTTTEEEEE------ESS-HHHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHHc----CCCCceEE-EeeCCEEEe------cCCChHHHHHHHHHHHHHhcCC
Confidence 356777777764 46788877 566766554 5678889999999999999984
No 90
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=24.58 E-value=3.3e+02 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 016807 132 GALVSVQLIWLISGILVYEAVDRIVHKSP 160 (382)
Q Consensus 132 ~~l~~~~~l~~~~~~~~~esi~~l~~~~~ 160 (382)
..-+.|++++++++.++..-+..+++--|
T Consensus 185 ~lR~~G~llmf~G~~~~~~~l~~l~~~~P 213 (248)
T PF07787_consen 185 ILRFIGWLLMFIGFFLLFSPLYTLVDWIP 213 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45567777888888888877777765433
No 91
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=24.49 E-value=1.9e+02 Score=21.68 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=23.7
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 342 KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 342 ~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
.+.+++.+..++ .+..++.+.+.+ +.++.|+ ++.+|
T Consensus 48 ~~~~e~~v~~~~-~~~~~lr~~L~~-la~elgv-DIavQ 83 (84)
T cd04871 48 KACVEFSVRGQP-ADLEALRAALLE-LASELNV-DIAFQ 83 (84)
T ss_pred cEEEEEEEeCCC-CCHHHHHHHHHH-HhcccCc-eEEEe
Confidence 566777777555 577777777765 4466665 56655
No 92
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=24.43 E-value=3.1e+02 Score=31.17 Aligned_cols=57 Identities=9% Similarity=0.136 Sum_probs=30.9
Q ss_pred cccHHHHHHHHhc-ccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 016807 311 EINVARLQRDLEC-IKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQ 369 (382)
Q Consensus 311 ~~~~~~i~~~l~~-~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~ 369 (382)
++..+.+.+-+++ +.+|.++++++......|.. .+.++++.+.+.+...+++++++.
T Consensus 55 ~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s--~I~v~f~~g~d~~~a~~~V~~~i~ 112 (1049)
T PRK15127 55 KTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV--QITLTFESGTDADIAQVQVQNKLQ 112 (1049)
T ss_pred HHHHHHhhHHHHHHhcCCCCceEEEEEecCCceE--EEEEEEECCCChHHHHHHHHHHHH
Confidence 3444444444433 45555667777654223444 455566667776655556666554
No 93
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=23.97 E-value=5.2e+02 Score=23.12 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHH
Q 016807 62 KLFCLIIFSLIAMVVEVVGGFKANSLA 88 (382)
Q Consensus 62 ~l~~~l~~n~~~~v~~~~~g~~s~S~a 88 (382)
...+++.+-+++.++|+++-++..|..
T Consensus 7 pf~~al~~vl~lg~lE~i~l~~G~s~s 33 (202)
T PF07290_consen 7 PFSIALALVLLLGVLEIIGLLFGLSLS 33 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 344667777888889988776666643
No 94
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=23.87 E-value=3.2e+02 Score=30.96 Aligned_cols=54 Identities=11% Similarity=0.208 Sum_probs=29.7
Q ss_pred HHHHHHHHhc-ccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 016807 314 VARLQRDLEC-IKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQ 369 (382)
Q Consensus 314 ~~~i~~~l~~-~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~ 369 (382)
.+.+.+-+++ +.++.++++++......|.. .+.++++++.+.++..+++++++.
T Consensus 58 E~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s--~i~v~f~~g~d~~~a~~~V~~~v~ 112 (1037)
T PRK10555 58 ENTVTQVIEQNMTGLDNLMYMSSQSSGTGQA--SVTLSFKAGTDPDEAVQQVQNQLQ 112 (1037)
T ss_pred HHHHhHHHHHHhcCCCCceEEEEEecCCCeE--EEEEEEECCCCHHHHHHHHHHHHH
Confidence 3344444432 34555556666654224554 455566777777666666666655
No 95
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=23.70 E-value=3.6e+02 Score=21.81 Aligned_cols=45 Identities=7% Similarity=0.146 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHH
Q 016807 133 ALVSVQLIWLISGILVYEAVDRIVHK--SPTVNGQLMFGVAAFGFLI 177 (382)
Q Consensus 133 ~l~~~~~l~~~~~~~~~esi~~l~~~--~~~~~~~~~~~i~~~~l~~ 177 (382)
+++.+++|++++..++.-++--+..+ ......+..++++++.++-
T Consensus 43 ~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIP 89 (115)
T PF05915_consen 43 SIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIP 89 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhc
Confidence 44444455555555544444444433 2334455555556655543
No 96
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.49 E-value=4e+02 Score=24.22 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=21.8
Q ss_pred CCCCcCchHHHHHHHHHHHHHHHHHHHHH
Q 016807 119 SQYSFGFNRFEILGALVSVQLIWLISGIL 147 (382)
Q Consensus 119 ~~~pfG~~r~E~l~~l~~~~~l~~~~~~~ 147 (382)
.++..+..++|.+..++-+++++++++..
T Consensus 52 ~~~~~~~~~lE~~WtviP~iil~~l~~~s 80 (228)
T MTH00140 52 CRTILEAQKLETIWTIVPALILVFLALPS 80 (228)
T ss_pred CccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 45667889999999988777766665543
No 97
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=23.32 E-value=3.4e+02 Score=20.73 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=39.9
Q ss_pred cccHHHHHHHHhcc-cCccccceeEEEEeeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 311 EINVARLQRDLECI-KGVQTIHDLHVWAITVGKLVLSCHVIAEPA-VSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 311 ~~~~~~i~~~l~~~-~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~-~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
+.+.+++.+.+++. ++-........--++.|-..+.+.+.++.+ -..+++ ++.+++.-+|+++.|.
T Consensus 16 e~Dl~~l~~~Ik~~~~~gl~~~~~~~epiaFGlk~L~i~~vv~D~~~~td~l----ee~i~~~d~VqsveI~ 83 (88)
T cd00292 16 EVDLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDDEGGTDEL----EEAISEEDGVQSVDVE 83 (88)
T ss_pred CcCHHHHHHHHHHhCcCCcEEEEEEEEEeeeEeeEEEEEEEEEeCCcCcHHH----HHHHhccCCceEEEEE
Confidence 44678888888764 444455566666666665566666667544 334444 4445445568887763
No 98
>COG4331 Predicted membrane protein [Function unknown]
Probab=23.15 E-value=4.6e+02 Score=22.17 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhc
Q 016807 66 LIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASG 114 (382)
Q Consensus 66 ~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~ 114 (382)
++++-..|.+.|+.--..+||..|+. -+.+|++..++.+.-.|.-+
T Consensus 112 si~vl~lFI~YQlyr~~~t~Si~liv---lti~Dv~viiLtllEYR~lk 157 (167)
T COG4331 112 SILVLVLFILYQLYRFFNTGSISLIV---LTIFDVFVIILTLLEYRLLK 157 (167)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 46666777788999999999999985 67899999999998888765
No 99
>PRK00701 manganese transport protein MntH; Reviewed
Probab=22.99 E-value=7.9e+02 Score=24.77 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=29.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhcCC---CCCCcchHHHHHHHHHHHHHHHHHH
Q 016807 123 FGFNRFEILGALVSVQLIWLISGILV------YEAVDRIVHKS---PTVNGQLMFGVAAFGFLINIIMVTC 184 (382)
Q Consensus 123 fG~~r~E~l~~l~~~~~l~~~~~~~~------~esi~~l~~~~---~~~~~~~~~~i~~~~l~~~~~~~~~ 184 (382)
.||.|+|.+...+.+++.+......+ .+.++. +.|. -+........++++|..+....+++
T Consensus 163 ~~y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~ 232 (439)
T PRK00701 163 RGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYL 232 (439)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHH
Confidence 56899999977555443332222221 122333 2343 1112334556666666655544443
No 100
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.92 E-value=1.1e+03 Score=27.71 Aligned_cols=6 Identities=33% Similarity=0.501 Sum_probs=2.7
Q ss_pred hhhHHH
Q 016807 59 SAIKLF 64 (382)
Q Consensus 59 ~~~~l~ 64 (382)
..+++.
T Consensus 18 ~~rrL~ 23 (1355)
T PRK10263 18 SGRRLL 23 (1355)
T ss_pred hhHHHH
Confidence 344444
No 101
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.87 E-value=2.8e+02 Score=19.49 Aligned_cols=56 Identities=11% Similarity=0.012 Sum_probs=32.3
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRI 374 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v 374 (382)
...++.+.+.+.. .++.++.......+...+.+.+++.+....++ +.++|++..+|
T Consensus 12 ~L~~i~~~i~~~~--~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~----i~~~L~~i~gV 67 (74)
T cd04887 12 MLGRVTTAIGEAG--GDIGAIDLVEQGRDYTVRDITVDAPSEEHAET----IVAAVRALPEV 67 (74)
T ss_pred hHHHHHHHHHHcC--CcEEEEEEEEecCCEEEEEEEEEcCCHHHHHH----HHHHHhcCCCe
Confidence 4677777776654 34455555544345666777777765433334 44555545454
No 102
>PRK00106 hypothetical protein; Provisional
Probab=21.87 E-value=1.2e+02 Score=31.45 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=36.5
Q ss_pred HHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCC-C-------HHHHHHHHHHHHHhhCCCceeEE
Q 016807 314 VARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAV-S-------SSEILDKIRDYCQKTHRIYHVTV 379 (382)
Q Consensus 314 ~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~-~-------~~~i~~~i~~~l~~~~~v~~vtv 379 (382)
.++++++..++|||....-+. .|+ ++.|.|+|+. + +.+|.++|++.+ ..+|--.|||
T Consensus 460 l~~lE~ia~~~~gV~~~yaiq-----aGR---EiRviV~p~~v~D~~~~~la~~ia~~Ie~~~-~yPG~ikvtv 524 (535)
T PRK00106 460 LRDLEEIANSFDGVQNSFALQ-----AGR---EIRIMVQPEKISDDQVTILAHKVREKIENNL-DYPGNIKVTV 524 (535)
T ss_pred HHHHHHHHhcCCcHHHHHHHh-----cCC---eEEEEecCCcCChHHHHHHHHHHHHHHHHhC-cCCCceEEEE
Confidence 456788888999986655443 344 5666777764 2 246777777776 3445556665
No 103
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=21.80 E-value=1.2e+02 Score=30.03 Aligned_cols=51 Identities=10% Similarity=0.085 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCCCCCcCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016807 107 LFAVWASGWNATSQYSFGFNRFEI-LGALVSVQLIWLISGILVYEAVDRIVH 157 (382)
Q Consensus 107 l~~~~~s~~~~~~~~pfG~~r~E~-l~~l~~~~~l~~~~~~~~~esi~~l~~ 157 (382)
..+.+.+..|..--..||..++|+ +..++..++++++.+++++--+.+++.
T Consensus 16 ~~~~~~~~~~Gyv~i~~~~~~ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (398)
T PRK10747 16 VVGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFR 67 (398)
T ss_pred HHHHHHcCCCCeEEEEECCEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335666677777788899999997 444555555555555555555665654
No 104
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=21.44 E-value=1.9e+02 Score=20.32 Aligned_cols=33 Identities=9% Similarity=0.307 Sum_probs=20.2
Q ss_pred cCCCCCCCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016807 114 GWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDR 154 (382)
Q Consensus 114 ~~~~~~~~pfG~~r~E~l~~l~~~~~l~~~~~~~~~esi~~ 154 (382)
.+++.++||-|- .+.++|++.++...+++-|+.
T Consensus 28 ~~~~e~kypvgP--------wLlglFvFVVcGSa~FqIIr~ 60 (65)
T KOG3491|consen 28 TTKKEKKYPVGP--------WLLGLFVFVVCGSALFQIIRT 60 (65)
T ss_pred ccCccccCCcch--------HHHHHHHHHhhcHHHHHHHHH
Confidence 356778898764 345556666666555555544
No 105
>COG4041 Predicted membrane protein [Function unknown]
Probab=21.32 E-value=2.7e+02 Score=23.09 Aligned_cols=77 Identities=22% Similarity=0.489 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEE
Q 016807 257 QSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVW 336 (382)
Q Consensus 257 ~s~~vlia~~l~~~~~~~~~~D~l~~iii~~~i~~~~~~~~~~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~ 336 (382)
.-+.++++++++|+ ++-.+|...++ -+.|.-.-.+.+-+.+++..|
T Consensus 8 eiv~i~~a~~i~wl--nfv~idt~mgl----------------------pekpgv~ga~~igr~ie~rgg---------- 53 (171)
T COG4041 8 EIVKIIIAGIICWL--NFVLIDTYMGL----------------------PEKPGVLGAKTIGRKIEDRGG---------- 53 (171)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHhhCC----------------------CCCCCccchHHHhhHHHHhCC----------
Confidence 33456677777777 45566665554 233444455667777777654
Q ss_pred EeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 016807 337 AITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQ 369 (382)
Q Consensus 337 ~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~ 369 (382)
.+.+|.+..+ |++.||.++-.++..+-.+|.
T Consensus 54 dlaggyfmgn--ivcspdasagtllasig~yl~ 84 (171)
T COG4041 54 DLAGGYFMGN--IVCSPDASAGTLLASIGNYLM 84 (171)
T ss_pred ccccceeecc--eeeCCCccchhHHHHhhhhee
Confidence 2345555454 478888887766666665554
No 106
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=20.74 E-value=1.3e+02 Score=29.84 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=31.4
Q ss_pred HHHHHhcCCCCCCCCcCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016807 108 FAVWASGWNATSQYSFGFNRFEI-LGALVSVQLIWLISGILVYEAVDRIVH 157 (382)
Q Consensus 108 ~~~~~s~~~~~~~~pfG~~r~E~-l~~l~~~~~l~~~~~~~~~esi~~l~~ 157 (382)
.+.+.+..|..-...||..++|+ +..++..++++++.+++++--+.+++.
T Consensus 17 ~~~~~~~~~Gyv~i~~~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~ 67 (409)
T TIGR00540 17 AGPMIAGHQGYVLIETANRIIEMSITGLAIFFIIALAIIFAFEWGLRRFFR 67 (409)
T ss_pred HHHHHcCCCCeEEEEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777778888899999997 444444444444445455555555553
No 107
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=20.53 E-value=7.2e+02 Score=23.37 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhchHHH---HHhhhHHHHhHHHHHHHHHHHHHhcCC
Q 016807 59 SAIKLFCLIIFSLIAMVVEVVGGFKANSLAV---MTDAAHLLTDIAGFSISLFAVWASGWN 116 (382)
Q Consensus 59 ~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aL---laDa~hsl~D~~~~~i~l~~~~~s~~~ 116 (382)
..+.+.....+.+++.+.|...|.++=-..+ ..-+.|.+.-.+......+......++
T Consensus 95 ~~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l~~~~~~~~Hl~~a~~~~~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 95 IRRRLRWLALLALVLVILQGLLGAWTVLSGLVSPYVVTLHLLLALLIFALLVWLALRARRP 155 (302)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3566667777788888888888877554443 557889998888888888877777766
No 108
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.37 E-value=3.5e+02 Score=20.21 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=37.0
Q ss_pred HHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCC--HHHHHHHHHHHHHhhCCCceeEEec
Q 016807 316 RLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS--SSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 316 ~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~--~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
++++-+++.-.-..+..+.+.+ +++++.+.++..-|+-.- -.+-.+++++.|++.+++....|++
T Consensus 6 ~Ire~l~k~~~~agis~IeI~R-t~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~~~~~i~v 72 (81)
T cd02413 6 ELNEFLTRELAEDGYSGVEVRV-TPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNFPEGSVEL 72 (81)
T ss_pred HHHHHHHHHHHhCCeeeEEEEE-cCCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCCCCCeEEE
Confidence 3444444332225568888877 466777777755443221 1233477777777777766555554
No 109
>PRK09577 multidrug efflux protein; Reviewed
Probab=20.35 E-value=4.3e+02 Score=29.93 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=25.9
Q ss_pred HHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 016807 317 LQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQ 369 (382)
Q Consensus 317 i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~ 369 (382)
+++.+.+++ ++++++... ..|. ..+.++++.+.+.+....++++++.
T Consensus 65 lE~~L~~v~---gv~~i~S~S-~~G~--s~I~v~f~~g~d~~~a~~~V~~~v~ 111 (1032)
T PRK09577 65 IEREMNGAP---GLLYTSATS-SAGQ--ASLSLTFKQGVNADLAAVEVQNRLK 111 (1032)
T ss_pred HHHHhcCCC---CceEEEEEe-cCCe--EEEEEEEECCCChHHHHHHHHHHHH
Confidence 444444444 456666554 3444 4666677777776555555555444
No 110
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=20.35 E-value=8.6e+02 Score=24.19 Aligned_cols=29 Identities=10% Similarity=-0.005 Sum_probs=16.9
Q ss_pred hHHHHHhhhHHHHhHHHHHHHHHHHHHhc
Q 016807 86 SLAVMTDAAHLLTDIAGFSISLFAVWASG 114 (382)
Q Consensus 86 S~aLlaDa~hsl~D~~~~~i~l~~~~~s~ 114 (382)
+..+..+.++...-++..++.++.+...-
T Consensus 239 gp~lg~~~i~~~~~a~~ig~ilV~l~~~~ 267 (397)
T TIGR01129 239 GPSLGADSIEAGIKAGLIGLVLVLVFMIL 267 (397)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666655555555543
No 111
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=20.13 E-value=3.6e+02 Score=19.70 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=21.6
Q ss_pred CCCCCCCcCchHHHHHHHHHHHHHHHHHHHHH
Q 016807 116 NATSQYSFGFNRFEILGALVSVQLIWLISGIL 147 (382)
Q Consensus 116 ~~~~~~pfG~~r~E~l~~l~~~~~l~~~~~~~ 147 (382)
+...++..+..++|.+...+=.++++++++--
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~pS 81 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLAFPS 81 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHhhh
Confidence 55567788888999999999888887777653
Done!