Query 016807
Match_columns 382
No_of_seqs 232 out of 1567
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 7.2E-54 2.4E-58 408.3 17.5 274 59-382 11-287 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 1.8E-53 6.2E-58 401.9 18.3 273 60-382 3-278 (283)
3 3byp_A CZRB protein; membrane 99.3 2.2E-12 7.5E-17 100.5 8.1 79 303-382 1-84 (94)
4 2zzt_A Putative uncharacterize 99.2 2.3E-11 7.7E-16 97.1 7.5 77 305-382 1-83 (107)
5 3j1z_P YIIP, cation efflux fam 96.9 0.00047 1.6E-08 64.8 3.6 90 63-160 123-212 (306)
6 3h90_A Ferrous-iron efflux pum 96.9 0.00038 1.3E-08 64.6 2.8 91 62-160 113-203 (283)
7 3cq1_A Putative uncharacterize 75.8 9.9 0.00034 28.8 7.3 67 314-381 8-81 (103)
8 1uwd_A Hypothetical protein TM 72.8 13 0.00043 28.1 7.2 68 314-381 8-82 (103)
9 3lno_A Putative uncharacterize 71.1 9.6 0.00033 29.2 6.2 41 341-381 44-85 (108)
10 2cvi_A 75AA long hypothetical 59.1 15 0.0005 26.3 4.9 58 313-380 14-72 (83)
11 2zbc_A 83AA long hypothetical 53.8 16 0.00056 25.8 4.4 58 313-380 14-72 (83)
12 2jsx_A Protein NAPD; TAT, proo 49.7 52 0.0018 24.5 6.6 64 304-379 11-74 (95)
13 3gxs_A Phenylacetate-coenzyme 47.1 86 0.0029 23.3 8.0 60 313-374 15-80 (109)
14 3rze_A Histamine H1 receptor, 45.8 1.2E+02 0.0042 28.0 10.5 24 164-187 12-35 (452)
15 3lax_A Phenylacetate-coenzyme 44.6 93 0.0032 23.0 8.8 61 313-374 15-80 (109)
16 3uon_A Human M2 muscarinic ace 44.1 1.4E+02 0.0048 27.8 10.6 21 167-187 30-50 (467)
17 3vw7_A Proteinase-activated re 38.0 1.7E+02 0.0057 27.5 10.1 21 166-186 26-46 (484)
18 4dkl_A MU-type opioid receptor 36.6 2.3E+02 0.0079 26.2 10.8 21 167-187 24-44 (464)
19 2rh1_A Beta-2-adrenergic recep 36.6 1.8E+02 0.0062 27.7 10.2 20 168-187 48-67 (500)
20 2cg4_A Regulatory protein ASNC 35.6 53 0.0018 26.2 5.2 58 313-380 81-139 (152)
21 3eml_A Human adenosine A2A rec 34.4 2E+02 0.0069 26.8 10.1 22 166-187 27-48 (488)
22 2djw_A Probable transcriptiona 33.9 15 0.0005 26.9 1.3 59 313-380 14-72 (92)
23 2dbb_A Putative HTH-type trans 33.1 77 0.0026 25.1 5.8 60 313-380 81-140 (151)
24 2z73_A Rhodopsin; visual pigme 31.4 2.1E+02 0.0072 26.6 9.6 20 168-187 42-61 (448)
25 3pbl_A D(3) dopamine receptor, 30.5 2.9E+02 0.01 25.6 10.5 24 164-187 42-65 (481)
26 2cyy_A Putative HTH-type trans 30.3 92 0.0032 24.6 5.8 59 311-380 77-136 (151)
27 2e1c_A Putative HTH-type trans 28.3 1E+02 0.0036 25.2 5.9 58 312-380 98-156 (171)
28 4eiy_A Adenosine receptor A2A/ 28.1 3.3E+02 0.011 24.9 10.3 21 167-187 38-58 (447)
29 2ks9_A Substance-P receptor; w 28.0 3.2E+02 0.011 24.2 10.2 19 169-187 41-59 (364)
30 3rfu_A Copper efflux ATPase; a 27.6 1.1E+02 0.0038 31.7 7.1 31 282-312 119-149 (736)
31 3sn6_R Lysozyme, beta-2 adrene 27.2 2E+02 0.007 27.4 8.8 21 167-187 189-209 (514)
32 2pn6_A ST1022, 150AA long hypo 25.9 93 0.0032 24.5 5.1 60 311-380 75-135 (150)
33 1zpv_A ACT domain protein; str 25.1 1.8E+02 0.0061 20.4 7.9 63 313-380 18-80 (91)
34 3odu_A C-X-C chemokine recepto 25.0 2.9E+02 0.01 25.8 9.4 21 167-187 55-75 (502)
35 4ea3_A Fusion protein of nocic 24.8 3.5E+02 0.012 24.9 9.8 21 167-187 132-152 (434)
36 3kog_A Putative pore-forming t 23.8 26 0.00088 30.7 1.2 6 201-206 236-241 (256)
37 1u19_A Rhodopsin; G protein-co 23.7 3.7E+02 0.013 23.5 10.1 20 168-187 46-65 (349)
38 2lot_A Apelin receptor; membra 23.1 4.9 0.00017 28.0 -2.9 21 169-189 37-57 (64)
39 3i4p_A Transcriptional regulat 22.8 1.9E+02 0.0064 23.2 6.4 58 312-380 77-135 (162)
40 3dh4_A Sodium/glucose cotransp 21.5 5.7E+02 0.019 24.8 14.4 9 181-189 509-517 (530)
41 2yy3_A Elongation factor 1-bet 21.5 2.5E+02 0.0084 20.6 6.5 67 310-380 17-86 (91)
42 4amj_A Beta-1 adrenergic recep 20.6 2.7E+02 0.0092 23.9 7.6 22 166-187 17-38 (315)
43 3uau_A JLPA, surface-exposed l 20.3 22 0.00074 31.9 0.0 9 314-322 163-171 (379)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=7.2e-54 Score=408.33 Aligned_cols=274 Identities=16% Similarity=0.182 Sum_probs=257.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHH
Q 016807 59 SAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQ 138 (382)
Q Consensus 59 ~~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~ 138 (382)
.++..++++++|++++++|+++|+++||+||+|||+||++|+++.++++++.+.++||+|++|||||+|+|+++++++++
T Consensus 11 vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~ 90 (306)
T 3j1z_P 11 VKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQSA 90 (306)
T ss_dssp SSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCcCcch
Q 016807 139 LIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKL 218 (382)
Q Consensus 139 ~l~~~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 218 (382)
+++++++++++|+++++++|++...+.+++++++++++.|..++++.++.
T Consensus 91 ~l~~~~~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------------------------ 140 (306)
T 3j1z_P 91 FIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRA------------------------------ 140 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHHHh------------------------------
Confidence 99999999999999999999877778888899999999999998888753
Q ss_pred hhhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhHHHHH
Q 016807 219 CAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLK 298 (382)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~~D~l~~iii~~~i~~~~~~~~~ 298 (382)
+++.+|.+++++++|.++|+++|++++++.++.++ ||+|+||+++++|++++++.+++++|
T Consensus 141 -----------------~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~~--g~~~~Dpi~ai~Ia~~I~~~~~~l~~ 201 (306)
T 3j1z_P 141 -----------------LAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQY--GWWWADGLFAVLIACYIGQQAFDLGY 201 (306)
T ss_dssp -----------------HTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCCS--SSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------ccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHHh--CcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 66778999999999999999999999998776544 89999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCH---HHHHHHHHHHHHhhCCCc
Q 016807 299 TIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS---SEILDKIRDYCQKTHRIY 375 (382)
Q Consensus 299 ~~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~---~~i~~~i~~~l~~~~~v~ 375 (382)
++...|+|++|++++.+++++.+++.|+|.+|+++|+|+.+ +++++++|+++|++++. |++.+++|+++++++++.
T Consensus 202 ~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~~~G-~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~ 280 (306)
T 3j1z_P 202 RSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQAG-KTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDA 280 (306)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCEEET-TEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEEEEC-CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999975 57889999999999984 689999999999999999
Q ss_pred eeEEecC
Q 016807 376 HVTVQIE 382 (382)
Q Consensus 376 ~vtv~ve 382 (382)
++|||+|
T Consensus 281 ~v~Ihve 287 (306)
T 3j1z_P 281 EVIIHQD 287 (306)
T ss_dssp EEEECCE
T ss_pred eEEEEeC
Confidence 9999986
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=1.8e-53 Score=401.86 Aligned_cols=273 Identities=16% Similarity=0.204 Sum_probs=256.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHH
Q 016807 60 AIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQL 139 (382)
Q Consensus 60 ~~~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~ 139 (382)
+|.+++++++|++++++|+++|+++||.||++||+||++|+++.++++++.+.++||+|++|||||+|+|++++++++++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCcCcchh
Q 016807 140 IWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLC 219 (382)
Q Consensus 140 l~~~~~~~~~esi~~l~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 219 (382)
++++++++++|+++++++|++..++.++++++++++++|.++++++++.
T Consensus 83 l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~~~------------------------------- 131 (283)
T 3h90_A 83 ISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWV------------------------------- 131 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999877777778999999999999999988754
Q ss_pred hhhhhccccCCCCCcchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhHHHHHH
Q 016807 220 AATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKT 299 (382)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vlia~~l~~~~~~~~~~D~l~~iii~~~i~~~~~~~~~~ 299 (382)
+++.+|++++++++|+++|+++|++++++.++. ++ ||+|+||++++++++++++.+++++|+
T Consensus 132 ----------------~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~-~~-g~~~~D~i~~i~ia~~i~~~~~~l~~~ 193 (283)
T 3h90_A 132 ----------------VRRTQSQAVRADMLHYQSDVMMNGAILLALGLS-WY-GWHRADALFALGIGIYILYSALRMGYE 193 (283)
T ss_dssp ----------------HHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC-ST-TSCCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999887664 33 899999999999999999999999999
Q ss_pred HHHHHhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCH---HHHHHHHHHHHHhhCCCce
Q 016807 300 IFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS---SEILDKIRDYCQKTHRIYH 376 (382)
Q Consensus 300 ~~~~Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~---~~i~~~i~~~l~~~~~v~~ 376 (382)
+...|+|++|+++..+++++.++++|+|.++|++|+|+.+ +++++++|++++++++. |++.++++++++++++..+
T Consensus 194 s~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~l~~~~~G-~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 272 (283)
T 3h90_A 194 AVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSG-PTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSD 272 (283)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHSSSCSEEEEEEEEEET-TEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCCcccceeeEEEEEC-CcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCe
Confidence 9999999999999999999999999999999999999874 57889999999999874 6899999999999998899
Q ss_pred eEEecC
Q 016807 377 VTVQIE 382 (382)
Q Consensus 377 vtv~ve 382 (382)
+|||+|
T Consensus 273 v~ih~e 278 (283)
T 3h90_A 273 VIIHQD 278 (283)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999987
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.34 E-value=2.2e-12 Score=100.48 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=68.1
Q ss_pred HHhcCCCCcccHHHHHHHHhcc--cCccccceeEEEEeeCCeEEEEEEEEeCCCCCH---HHHHHHHHHHHHhhCCCcee
Q 016807 303 ILMERTPSEINVARLQRDLECI--KGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS---SEILDKIRDYCQKTHRIYHV 377 (382)
Q Consensus 303 ~Ll~~~p~~~~~~~i~~~l~~~--~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~---~~i~~~i~~~l~~~~~v~~v 377 (382)
.|||++|+++..++|++.++++ |||.+||++|+|+.+ +.+++++||.++++++. +++.+++++.|++.+++.++
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g-~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~v 79 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAG-PRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQA 79 (94)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEET-TEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred CCcCCCCCHHHHHHHHHHHHhcCCCCceeeeeEEEEEEC-CcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 4899999999999999999999 999999999999974 57889999999999873 68999999999999997799
Q ss_pred EEecC
Q 016807 378 TVQIE 382 (382)
Q Consensus 378 tv~ve 382 (382)
|||+|
T Consensus 80 tIh~e 84 (94)
T 3byp_A 80 TIHVE 84 (94)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99986
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.21 E-value=2.3e-11 Score=97.07 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=66.9
Q ss_pred hcCCCCcc--cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCH---HHHHHHHHHHHHhhCC-CceeE
Q 016807 305 MERTPSEI--NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS---SEILDKIRDYCQKTHR-IYHVT 378 (382)
Q Consensus 305 l~~~p~~~--~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~---~~i~~~i~~~l~~~~~-v~~vt 378 (382)
||++|+++ ..++|++.++++|||.+|+++|+|.. ++.++++++|+++++++. +++.+++++.|++.++ +.++|
T Consensus 1 md~~~~~~~~~~~~I~~~l~~~~gV~~vh~lr~r~~-G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLERFPNVHNPHRVRIRRV-GTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSSCEEEEEEEEECS-CC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCCccHHHHHHHHHHHHcCCCccccEEEEEEEE-CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 57888888 99999999999999999999999985 467889999999999874 5799999999999998 99999
Q ss_pred EecC
Q 016807 379 VQIE 382 (382)
Q Consensus 379 v~ve 382 (382)
||+|
T Consensus 80 IhvE 83 (107)
T 2zzt_A 80 IHVE 83 (107)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 5
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=96.91 E-value=0.00047 Score=64.77 Aligned_cols=90 Identities=19% Similarity=0.159 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHHHHH
Q 016807 63 LFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWL 142 (382)
Q Consensus 63 l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~l~~ 142 (382)
...+++.|+.++....-.+-..+|.++.||++|...|+++++..+++.-.+. ||+..++++++++.+++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~I~~ 194 (306)
T 3j1z_P 123 SVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACYIGQ 194 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHHHHH
T ss_pred hhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHHHHH
Confidence 3355667777777777777788999999999999999999988877655432 68889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 016807 143 ISGILVYEAVDRIVHKSP 160 (382)
Q Consensus 143 ~~~~~~~esi~~l~~~~~ 160 (382)
.++.++++++..|++..+
T Consensus 195 ~~~~l~~~s~~~Ll~~~~ 212 (306)
T 3j1z_P 195 QAFDLGYRSIQALLDREL 212 (306)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 999999999999997653
No 6
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=96.89 E-value=0.00038 Score=64.60 Aligned_cols=91 Identities=23% Similarity=0.198 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhHHHHhHHHHHHHHHHHHHhcCCCCCCCCcCchHHHHHHHHHHHHHHH
Q 016807 62 KLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIW 141 (382)
Q Consensus 62 ~l~~~l~~n~~~~v~~~~~g~~s~S~aLlaDa~hsl~D~~~~~i~l~~~~~s~~~~~~~~pfG~~r~E~l~~l~~~~~l~ 141 (382)
...+++++|.+++....-.|-..+|.++.+|++|.+.|+++++..+++...+ .+|+..++++++++.+++++
T Consensus 113 v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i~ 184 (283)
T 3h90_A 113 VTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYIL 184 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHHH
Confidence 4456778888888887777888899999999999999999998777665332 25888899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 016807 142 LISGILVYEAVDRIVHKSP 160 (382)
Q Consensus 142 ~~~~~~~~esi~~l~~~~~ 160 (382)
..+..++++++..|++..+
T Consensus 185 ~~~~~l~~~s~~~Ll~~~~ 203 (283)
T 3h90_A 185 YSALRMGYEAVQSLLDRAL 203 (283)
T ss_dssp HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 9999999999999997653
No 7
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=75.80 E-value=9.9 Score=28.79 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHHHHhcc--cC----ccccceeEEEEeeCCeEEEEEEEEeCCCCC-HHHHHHHHHHHHHhhCCCceeEEec
Q 016807 314 VARLQRDLECI--KG----VQTIHDLHVWAITVGKLVLSCHVIAEPAVS-SSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 314 ~~~i~~~l~~~--~~----V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~-~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
.+++.+.|+++ |+ +.+..-++--.+.+++..+.+.+..+ ..+ .+.+.+++++.+++..|+..+.|++
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~-~cp~~~~l~~~i~~al~~l~gv~~V~V~l 81 (103)
T 3cq1_A 8 EAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTP-GCPLHDSLGEAVRQALSRLPGVEEVEVEV 81 (103)
T ss_dssp HHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSS-SCCSSCHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred HHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCC-CCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 45666667663 32 33333333333445654444444322 333 4688999999997767898888875
No 8
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=72.81 E-value=13 Score=28.13 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=39.6
Q ss_pred HHHHHHHHhcc--cC----ccccceeEEEEeeC-CeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEec
Q 016807 314 VARLQRDLECI--KG----VQTIHDLHVWAITV-GKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 381 (382)
Q Consensus 314 ~~~i~~~l~~~--~~----V~~v~~l~~~~~~~-~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~v 381 (382)
.+++.+.|+++ |+ +.+..-++--.+.+ |+..+.+.+..+.-.-.+.+.+.+++.+++..|+..+.|++
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l 82 (103)
T 1uwd_A 8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVEL 82 (103)
T ss_dssp HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred HHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 45677777664 32 22222222222343 55555555543333235688999999997767898888865
No 9
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=71.08 E-value=9.6 Score=29.20 Aligned_cols=41 Identities=7% Similarity=0.227 Sum_probs=29.0
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHH-HhhCCCceeEEec
Q 016807 341 GKLVLSCHVIAEPAVSSSEILDKIRDYC-QKTHRIYHVTVQI 381 (382)
Q Consensus 341 ~~~~v~v~i~v~~~~~~~~i~~~i~~~l-~~~~~v~~vtv~v 381 (382)
|++.+++.+..+.-.-...+.+.+++++ ++..|+..|.|++
T Consensus 44 ~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l 85 (108)
T 3lno_A 44 NNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNV 85 (108)
T ss_dssp CCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred CeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 5665666554443323468889999999 7777899888875
No 10
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=59.09 E-value=15 Score=26.33 Aligned_cols=58 Identities=10% Similarity=0.112 Sum_probs=36.2
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
..+++.+.+.+.|+|..++ .++|+ .+.+.+ .++ +.+++.+-+.+++.+..||.++...
T Consensus 14 ~~~~~~~~l~~~peV~e~~-----~vtG~~D~ll~v--~~~---d~~~l~~~i~~~l~~~~gV~~~~T~ 72 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAY-----VVYGEYDLIVKV--ETD---TLKDLDQFITEKIRKMPEIQMTSTM 72 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEE-----ECBSSCSEEEEE--EES---SHHHHHHHHHTTGGGCTTEEEEEEE
T ss_pred CHHHHHHHHhCCCCeeEEE-----EEcccCCEEEEE--EEC---CHHHHHHHHHHHhccCCCEeEEEEE
Confidence 3578999999999886664 44433 455544 443 4555555555567666677766544
No 11
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=53.79 E-value=16 Score=25.77 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=35.7
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
..+++.+.+.+.|+|..++ .++|+ .+.+ .+.++ +.+++.+-+.+.+.+..||.++...
T Consensus 14 ~~~~~~~~l~~~peV~~~~-----~vtG~~d~l~--~v~~~---d~~~l~~~~~~~l~~~~gV~~~~t~ 72 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVH-----VVYGVYDIVV--KVEAD---SMDKLKDFVTNTIRKLPKVRSTLTM 72 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEE-----ECSSSCSEEE--EEECS---SHHHHHHHHHHTGGGSTTEEEEEEE
T ss_pred CHHHHHHHHhCCCCeEEEE-----EEeccCCEEE--EEEEC---CHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 3578889999999876654 33333 3444 44443 4555555555567666677776654
No 12
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=49.73 E-value=52 Score=24.50 Aligned_cols=64 Identities=14% Similarity=0.353 Sum_probs=42.3
Q ss_pred HhcCCCCcccHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEE
Q 016807 304 LMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTV 379 (382)
Q Consensus 304 Ll~~~p~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv 379 (382)
|++..|. ..+++.+.|.++||+ ++ +.-.-..|++++.+. ..+.+++.+.+ +++++..||.++..
T Consensus 11 vV~~~p~--~~~~V~~~L~~ipgv-Ei---~~~~~~~GkiVV~iE-----a~~~~~l~~~i-~~I~~i~GVlst~l 74 (95)
T 2jsx_A 11 VVQAKSE--RISDISTQLNAFPGC-EV---AVSDAPSGQLIVVVE-----AEDSETLIQTI-ESVRNVEGVLAVSL 74 (95)
T ss_dssp EEEECTT--SHHHHHHHHTTSTTE-EE---EEEETTTTEEEEEEE-----ESSHHHHHHHH-HHHTTSTTEEEEEE
T ss_pred EEEECCC--CHHHHHHHHHCCCCe-EE---EEecCCCCCEEEEEE-----eCCHHHHHHHH-HHHhcCCCccEEeE
Confidence 3444453 478999999999987 33 432211467766553 33677888877 77888888877765
No 13
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=47.08 E-value=86 Score=23.33 Aligned_cols=60 Identities=7% Similarity=-0.037 Sum_probs=38.5
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCC------CHHHHHHHHHHHHHhhCCC
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAV------SSSEILDKIRDYCQKTHRI 374 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~------~~~~i~~~i~~~l~~~~~v 374 (382)
...+|++.+.++|+|.....+-+.. ..+.=.+.+.+++ ++. +.+++.+.+++.+.+.+++
T Consensus 15 ~P~eIE~~l~~~p~v~~~~~v~v~~-~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 80 (109)
T 3gxs_A 15 FPIQIETILLQFKELGSDYLITLET-AESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEEEEE-ETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCcCCcEEEEEEc-CCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhCC
Confidence 5678999999999987655555443 2332234555566 432 2356788888888776665
No 14
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=45.78 E-value=1.2e+02 Score=28.04 Aligned_cols=24 Identities=4% Similarity=0.128 Sum_probs=17.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhc
Q 016807 164 GQLMFGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 164 ~~~~~~i~~~~l~~~~~~~~~~~~ 187 (382)
.....++.++|++.|++..+.+.+
T Consensus 12 ~~~~~~~~~~gi~gN~~vi~~~~~ 35 (452)
T 3rze_A 12 VVVLSTICLVTVGLNLLVLYAVRS 35 (452)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566788899999988776654
No 15
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=44.59 E-value=93 Score=22.99 Aligned_cols=61 Identities=7% Similarity=-0.052 Sum_probs=39.6
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCC-----HHHHHHHHHHHHHhhCCC
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS-----SSEILDKIRDYCQKTHRI 374 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~-----~~~i~~~i~~~l~~~~~v 374 (382)
..++|++.+.++|+|....-+-+..- .+.-...+.++..+... .+++.+++++.+...+++
T Consensus 15 ~P~eIE~vl~~~p~v~~~~vv~v~~~-~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 15 FPIQIETILLQFKELGSDYLITLETA-ESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEEEEEE-TTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCcccceEEEEecc-ccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 45789999999999877665555442 33334555566665543 245677888888766664
No 16
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=44.05 E-value=1.4e+02 Score=27.80 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016807 167 MFGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 167 ~~~i~~~~l~~~~~~~~~~~~ 187 (382)
..++.++|++.|++.++.+.+
T Consensus 30 ~~~~~~~g~~gN~lvi~~~~~ 50 (467)
T 3uon_A 30 AGSLSLVTIIGNILVMVSIKV 50 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHheeeeee
Confidence 345677888899888776653
No 17
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=38.00 E-value=1.7e+02 Score=27.46 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 016807 166 LMFGVAAFGFLINIIMVTCIG 186 (382)
Q Consensus 166 ~~~~i~~~~l~~~~~~~~~~~ 186 (382)
...++.++|++.|++..+.+.
T Consensus 26 ~~~~i~~~~i~gN~lvi~~~~ 46 (484)
T 3vw7_A 26 VYTGVFVVSLPLNIMAIVVFI 46 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344567788889988776655
No 18
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=36.60 E-value=2.3e+02 Score=26.15 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016807 167 MFGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 167 ~~~i~~~~l~~~~~~~~~~~~ 187 (382)
..+++++|++.|++..+.+.+
T Consensus 24 ~~~~~~~gi~gN~lvi~~~~~ 44 (464)
T 4dkl_A 24 YSIVCVVGLFGNFLVMYVIVR 44 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHeehhhhh
Confidence 345677888889887776653
No 19
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=36.58 E-value=1.8e+02 Score=27.74 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016807 168 FGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 168 ~~i~~~~l~~~~~~~~~~~~ 187 (382)
.++.++|++.|++..+.+.+
T Consensus 48 ~~i~~~gi~gN~lvi~~i~~ 67 (500)
T 2rh1_A 48 SLIVLAIVFGNVLVITAIAK 67 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34456778888877766553
No 20
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=35.59 E-value=53 Score=26.17 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=36.7
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
..+++.+.+.+.|+|..++. ++|+ .+.+.+ .++ +.+++.+-+.+.+.+..+|.++...
T Consensus 81 ~~~~~~~~l~~~peV~~~~~-----vtG~~d~~~~v--~~~---d~~~l~~~l~~~l~~~~gV~~~~t~ 139 (152)
T 2cg4_A 81 DYPSALAKLESLDEVTEAYY-----TTGHYSIFIKV--MCR---SIDALQHVLINKIQTIDEIQSTETL 139 (152)
T ss_dssp GHHHHHHHHHTCTTEEEEEE-----ESSSCSEEEEE--EES---CHHHHHHHHHHTTTTSTTEEEEEEE
T ss_pred CHHHHHHHHhCCcCeEEEEE-----EecccCEEEEE--EEC---CHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 56789999999998866653 2332 344444 443 4566655566667666677666544
No 21
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=34.37 E-value=2e+02 Score=26.80 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 016807 166 LMFGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 166 ~~~~i~~~~l~~~~~~~~~~~~ 187 (382)
...++.++|++.|++.++.+.+
T Consensus 27 ~~~~i~~~gi~gN~lvi~~~~~ 48 (488)
T 3eml_A 27 VELAIAVLAILGNVLVCWAVWL 48 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhheee
Confidence 3445678889999988876653
No 22
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=33.89 E-value=15 Score=26.90 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=32.2
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
..+++.+.+.+.|+|..++ .++| .+-.-+++.+++ .+++.+-+.+++.+..+|.++...
T Consensus 14 ~~~~~~~~l~~~peV~~~~-----~vtG-~~D~ll~v~~~d---~~~l~~~l~~~l~~~~gV~~~~T~ 72 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVY-----SVTG-PYDLVALVRLKD---VEELDDVVTQGILSLEGVERTETL 72 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEE-----EESS-SSSEEEEEEESS---GGGHHHHCCCCCTTSTTEEEEEEE
T ss_pred CHHHHHHHHhcCCCeEEEE-----Eeec-CCCEEEEEEECC---HHHHHHHHHHhcccCCCEeEEEEE
Confidence 4678889999999886654 3333 333334445543 333323233445445566555443
No 23
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=33.09 E-value=77 Score=25.07 Aligned_cols=60 Identities=10% Similarity=0.183 Sum_probs=35.5
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
..+++.+.+.+.|+|..++.+ .|.-.+.+.+ .++ .+.+++.+-+.+.+.+..+|.++...
T Consensus 81 ~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v--~~~--~d~~~l~~~~~~~l~~~~gV~~~~t~ 140 (151)
T 2dbb_A 81 DADKVISEISDIEYVKSVEKG----VGRYNIIVRL--LLP--KDIKDAENLISEFLQRIKNAENVEVI 140 (151)
T ss_dssp HHHHHHHHHTTCTTEEEEEEE----ESSCSEEEEE--EEE--SSHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred CHHHHHHHHHcCCCeEEEeEe----cCCCCEEEEE--EEc--CCHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 456888889999988666532 1222344444 441 13555555555667666677666554
No 24
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=31.37 E-value=2.1e+02 Score=26.58 Aligned_cols=20 Identities=15% Similarity=-0.114 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016807 168 FGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 168 ~~i~~~~l~~~~~~~~~~~~ 187 (382)
.+++++|++.|++..+.+.+
T Consensus 42 ~ii~i~gi~gN~lvi~vi~~ 61 (448)
T 2z73_A 42 GICGIIGCGGNGIVIYLFTK 61 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHhhhhhhh
Confidence 34567888889888777653
No 25
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=30.53 E-value=2.9e+02 Score=25.63 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=17.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhc
Q 016807 164 GQLMFGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 164 ~~~~~~i~~~~l~~~~~~~~~~~~ 187 (382)
.....++.++|++.|++.++.+.+
T Consensus 42 ~~~~~~~~~~g~~gN~lvi~~~~~ 65 (481)
T 3pbl_A 42 ALSYCALILAIVFGNGLVCMAVLK 65 (481)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhh
Confidence 345566788899999998776653
No 26
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=30.33 E-value=92 Score=24.65 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=36.6
Q ss_pred cccHHHHHHHHhcccCccccceeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 311 EINVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 311 ~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
+...+++.+.+.+.|+|..++. ++|+ .+++.+ .++ +.+++.+-+ +.+.+..+|.++...
T Consensus 77 ~~~~~~~~~~l~~~p~V~~~~~-----~tG~~d~~~~v--~~~---d~~~l~~~~-~~l~~~~gV~~~~t~ 136 (151)
T 2cyy_A 77 AGKYSEVASNLAKYPEIVEVYE-----TTGDYDMVVKI--RTK---NSEELNNFL-DLIGSIPGVEGTHTM 136 (151)
T ss_dssp TTCHHHHHHHHHTCTTEEEEEE-----CSSSSSEEEEE--EES---SHHHHHHHH-HHHHTSTTEEEEEEE
T ss_pred cccHHHHHHHHhcCCCeeEeeE-----ecCCCCEEEEE--EEC---CHHHHHHHH-HHHhCCCCEeEEEEE
Confidence 3457889999999998866643 3332 355544 443 445554555 667666677666554
No 27
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=28.31 E-value=1e+02 Score=25.19 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=35.9
Q ss_pred ccHHHHHHHHhcccCccccceeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 312 INVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 312 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
...+++.+.+.+.|+|..++. ++++ .+++.+ .++ +.+++.+-+ +.+.+..+|.++...
T Consensus 98 ~~~~~v~~~l~~~peV~~~~~-----vtG~~d~l~~v--~~~---d~~~l~~~l-~~l~~~~gV~~~~t~ 156 (171)
T 2e1c_A 98 GKYSEVASNLAKYPEIVEVYE-----TTGDYDMVVKI--RTK---NSEELNNFL-DLIGSIPGVEGTHTM 156 (171)
T ss_dssp TCHHHHHHHHHTSTTEEEEEE-----CSSSSSEEEEE--EES---SHHHHHHHH-HHHHHSTTEEEEEEE
T ss_pred chHHHHHHHHhcCcCeEEEEE-----eeCCCCEEEEE--EEC---CHHHHHHHH-HHHhcCCCcceEEEE
Confidence 457889999999998866643 3332 354544 443 345554445 667666677766554
No 28
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=28.13 E-value=3.3e+02 Score=24.88 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016807 167 MFGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 167 ~~~i~~~~l~~~~~~~~~~~~ 187 (382)
..++.++|++.|++..+.+.+
T Consensus 38 ~~~i~~~gi~gN~~vl~~~~~ 58 (447)
T 4eiy_A 38 ELAIAVLAILGNVLVCWAVWL 58 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344677888899888776653
No 29
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=28.03 E-value=3.2e+02 Score=24.23 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 016807 169 GVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 169 ~i~~~~l~~~~~~~~~~~~ 187 (382)
++.++|++.|++..+...+
T Consensus 41 ~i~~~gi~gN~lvi~vi~~ 59 (364)
T 2ks9_A 41 VIVVTSVVGNVVVMWIILA 59 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567788888887766553
No 30
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=27.59 E-value=1.1e+02 Score=31.67 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCCCcc
Q 016807 282 TLIFAAFALSTTVPMLKTIFVILMERTPSEI 312 (382)
Q Consensus 282 ~iii~~~i~~~~~~~~~~~~~~Ll~~~p~~~ 312 (382)
-++-...+++.+++.++.+++.|..+.+.-+
T Consensus 119 ~~l~~~v~~~~g~~f~~~a~~~l~~~~~~md 149 (736)
T 3rfu_A 119 LLLATPVVLWGGWPFFKRGWQSLKTGQLNMF 149 (736)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCChH
Confidence 3333445678999999999999998887654
No 31
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=27.23 E-value=2e+02 Score=27.44 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016807 167 MFGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 167 ~~~i~~~~l~~~~~~~~~~~~ 187 (382)
..++.++|++.|++..+.+.+
T Consensus 189 ~~ii~~~gi~gN~lvi~vi~~ 209 (514)
T 3sn6_R 189 MSLIVLAIVFGNVLVITAIAK 209 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhhhheec
Confidence 445677888999888776553
No 32
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=25.95 E-value=93 Score=24.50 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=37.7
Q ss_pred cccHHHHHHHHhcccCccccceeEEEEeeC-CeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 311 EINVARLQRDLECIKGVQTIHDLHVWAITV-GKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 311 ~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~-~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
+...+++.+.+.+.|+|..++. +++ ..+.+.+ .++ +.+++.+-+.+.+.+..+|.++...
T Consensus 75 ~~~~~~~~~~l~~~p~V~~~~~-----~tG~~d~~~~v--~~~---d~~~l~~~l~~~l~~~~gV~~~~t~ 135 (150)
T 2pn6_A 75 KNYHVELGNKLAQIPGVWGVYF-----VLGDNDFIVMA--RYK---TREEFMEKFLERVMSIPEVERTSTQ 135 (150)
T ss_dssp TTHHHHHHHHHHTSTTEEEEEE-----CSSSCSEEEEE--EES---SHHHHHHHTHHHHTTCTTEEEEEEE
T ss_pred hhHHHHHHHHHhcCchhhhhhh-----hcCcCCEEEEE--EEC---CHHHHHHHHHHHhccCCCeeEEEEE
Confidence 3567889999999998865543 333 2354444 433 4556655565677766677666554
No 33
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=25.12 E-value=1.8e+02 Score=20.38 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=41.5
Q ss_pred cHHHHHHHHhcccCccccceeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 313 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 313 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
.+.++.+.+.+.. .++.++..... .+.+.+.+.+.+++....+++.++++... +.+++ ++.++
T Consensus 18 ila~vt~~la~~~--~NI~~i~~~~~-~~~~~~~i~v~~~~~~~l~~l~~~L~~~~-~~~~~-~~~~~ 80 (91)
T 1zpv_A 18 IVAGVSGKIAELG--LNIDDISQTVL-DEYFTMMAVVSSDEKQDFTYLRNEFEAFG-QTLNV-KINIQ 80 (91)
T ss_dssp HHHHHHHHHHHTT--CEEEEEEEEEE-TTEEEEEEEEEESSCCCHHHHHHHHHHHH-HHHTE-EEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEeEEE-cCEEEEEEEEEeCCCCCHHHHHHHHHHHH-HHcCC-EEEEe
Confidence 4677777776654 45666666553 36777888888887667788888887644 44553 34444
No 34
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=24.98 E-value=2.9e+02 Score=25.83 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016807 167 MFGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 167 ~~~i~~~~l~~~~~~~~~~~~ 187 (382)
..++.++|++.|++.++.+.+
T Consensus 55 ~~~i~~~g~~gN~lvi~~~~~ 75 (502)
T 3odu_A 55 YSIIFLTGIVGNGLVILVMGY 75 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345677888889888877654
No 35
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=24.78 E-value=3.5e+02 Score=24.95 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016807 167 MFGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 167 ~~~i~~~~l~~~~~~~~~~~~ 187 (382)
..++.++|++.|++..+...+
T Consensus 132 ~~~i~~~gi~gN~lvi~~i~~ 152 (434)
T 4ea3_A 132 YLAVCVGGLLGNCLVMYVILR 152 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHeeeeeee
Confidence 345677888889888776654
No 36
>3kog_A Putative pore-forming toxin; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.85A {Bacteroides vulgatus atcc 8482}
Probab=23.84 E-value=26 Score=30.73 Aligned_cols=6 Identities=67% Similarity=1.138 Sum_probs=1.8
Q ss_pred CCCCCC
Q 016807 201 GGHVHG 206 (382)
Q Consensus 201 ~~h~~~ 206 (382)
|+|+||
T Consensus 236 ~~hghg 241 (256)
T 3kog_A 236 HGHGHG 241 (256)
T ss_dssp CBTBC-
T ss_pred cccCcC
Confidence 333333
No 37
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=23.72 E-value=3.7e+02 Score=23.48 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016807 168 FGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 168 ~~i~~~~l~~~~~~~~~~~~ 187 (382)
.++.++|++.|.+..+...+
T Consensus 46 ~~i~~~gi~gN~lvi~~i~~ 65 (349)
T 1u19_A 46 FLLIMLGFPINFLTLYVTVQ 65 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHheEeehhh
Confidence 35567888889887776653
No 38
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=23.12 E-value=4.9 Score=27.95 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 016807 169 GVAAFGFLINIIMVTCIGHDH 189 (382)
Q Consensus 169 ~i~~~~l~~~~~~~~~~~~~~ 189 (382)
++-++|++.|.+.+|.+.+..
T Consensus 37 lvFvlGl~GN~lvl~v~~~~~ 57 (64)
T 2lot_A 37 LVFLLGTTGNGLVLWTVFRKK 57 (64)
T ss_dssp HTTTTTTTSSSSHHHHHHHHS
T ss_pred HHHHHHHhhhhhheeeeeEec
Confidence 344567777777666655443
No 39
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.81 E-value=1.9e+02 Score=23.19 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=34.8
Q ss_pred ccHHHHHHHHhcccCccccceeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 312 INVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 312 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~i~v~~~~~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
+..+++.+.+.+.|+|..++. ++|+ .+.+.+ .++ +.+++.+-+.+.+.+.. |.++...
T Consensus 77 ~~~~~~~~~l~~~peV~~~~~-----vtG~~D~~l~v--~~~---d~~~l~~~l~~~l~~~~-V~~~~T~ 135 (162)
T 3i4p_A 77 EWLKRFSEVVSEFPEVVEFYR-----MSGDVDYLLRV--VVP---DIAAYDAFYKRMIAKIE-IRDVSSA 135 (162)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-----CCSSCSEEEEE--EES---SHHHHHHHHHHHHHHCC-CSEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEeee-----cCCCCCEEEEE--EEC---CHHHHHHHHHHHhhcCC-eeEEEEE
Confidence 347788899999998866553 3332 354544 443 44555555555555444 7666554
No 40
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=21.51 E-value=5.7e+02 Score=24.84 Aligned_cols=9 Identities=11% Similarity=-0.312 Sum_probs=3.9
Q ss_pred HHHHHhcCC
Q 016807 181 MVTCIGHDH 189 (382)
Q Consensus 181 ~~~~~~~~~ 189 (382)
.+.++++-.
T Consensus 509 ~y~~f~~~~ 517 (530)
T 3dh4_A 509 LYTLFWVLY 517 (530)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
Confidence 344444443
No 41
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=21.48 E-value=2.5e+02 Score=20.64 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHhcc-cCccccceeEEEEeeCCeEEEEEEEEeCCC-C-CHHHHHHHHHHHHHhhCCCceeEEe
Q 016807 310 SEINVARLQRDLECI-KGVQTIHDLHVWAITVGKLVLSCHVIAEPA-V-SSSEILDKIRDYCQKTHRIYHVTVQ 380 (382)
Q Consensus 310 ~~~~~~~i~~~l~~~-~~V~~v~~l~~~~~~~~~~~v~v~i~v~~~-~-~~~~i~~~i~~~l~~~~~v~~vtv~ 380 (382)
++.+.+++++.+++. ++-........--++.|-..+.+.+.++++ - +.+++-+.++. --+|+++.|.
T Consensus 17 ~etDl~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~lee~i~~----~e~VqSvdV~ 86 (91)
T 2yy3_A 17 PDVNLDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEKFEE----VENVESAEVE 86 (91)
T ss_dssp TTSCHHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHHHHHHHH----STTEEEEEEE
T ss_pred CCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccccHHHHHHHhc----CCCceEEEEE
Confidence 345788888888764 555566666666777776778888888765 3 45665555433 2357777663
No 42
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=20.56 E-value=2.7e+02 Score=23.88 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 016807 166 LMFGVAAFGFLINIIMVTCIGH 187 (382)
Q Consensus 166 ~~~~i~~~~l~~~~~~~~~~~~ 187 (382)
...++.++|++.|.+..+...+
T Consensus 17 ~~~~~~~~gi~gN~lvi~~i~~ 38 (315)
T 4amj_A 17 LMALVVLLIVAGNVLVIAAIGS 38 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHhhh
Confidence 3445677888889888777653
No 43
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=20.34 E-value=22 Score=31.91 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 016807 314 VARLQRDLE 322 (382)
Q Consensus 314 ~~~i~~~l~ 322 (382)
++...+.+.
T Consensus 163 I~~~~~kLS 171 (379)
T 3uau_A 163 ISSFINKLS 171 (379)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 344444443
Done!