BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016808
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 478 bits (1229), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/339 (67%), Positives = 269/339 (79%), Gaps = 2/339 (0%)
Query: 42 LWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR 101
WK +GN + GITAP + H + MEEISRASG+VGLSYGAHSNLCINQLVR
Sbjct: 51 FWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVR 110
Query: 102 HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 161
+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++ YI+NGNK W TNG
Sbjct: 111 NGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG 170
Query: 162 PVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCF 219
P A L+VYAKTD+ A S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C
Sbjct: 171 PDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCK 230
Query: 220 VPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEF 279
+P N+LG E KGVYV+MSGLDLERLVLA GPLG+MQA LD +PY+ RE FG+ +G F
Sbjct: 231 IPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHF 290
Query: 280 QFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCL 339
Q +QGK ADMYT L + R YVY+VA+ CD G KDCAGVIL +AE ATQV L IQC
Sbjct: 291 QLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCF 350
Query: 340 GGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 378
GGNGY+N++ GR LRDAKLYEIGAGTSE+RR++IGRA
Sbjct: 351 GGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAF 389
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/373 (38%), Positives = 201/373 (53%), Gaps = 6/373 (1%)
Query: 8 RSLCASFFTKKQKHSAAFSSTSLLFDDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 67
R C F K+ AA LF +Q+ K MG L + P+E
Sbjct: 18 RQTCRDFAEKELVPIAAQLDKEHLFPTSQV------KKMGELGLLAMDVPEELSGAGLDY 71
Query: 68 XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 127
+ IA+EEISR S G+ +++L + +++ GS QK +++ +G+ +G A+S
Sbjct: 72 LAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALS 131
Query: 128 EPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 187
EP GSD A +++NG K W TN A VV+A TD +KGI+AF++
Sbjct: 132 EPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLV 191
Query: 188 EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVL 247
PG + +K DKLG+R S T L+FE+C +P EN+LG+ G G + M LD+ R+ +
Sbjct: 192 PMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGI 251
Query: 248 AAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDC 307
A+ LGI QA LD + Y R FG PL + Q IQ K ADM AL+S+R + A
Sbjct: 252 ASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARLLTWRAAMLK 311
Query: 308 DNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS 367
DN K K+ A L A+E AT ++ QAIQ LGG GYV E R RDA++ EI GTS
Sbjct: 312 DNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARITEIYEGTS 371
Query: 368 EIRRMIIGRALLK 380
EI+R++I LL+
Sbjct: 372 EIQRLVIAGHLLR 384
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 251 bits (641), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 195/312 (62%), Gaps = 1/312 (0%)
Query: 70 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 129
+ +A+EE+++ V ++ A +LC N + + G+ AQK+K+L L+ G +GA ++EP
Sbjct: 72 YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEP 131
Query: 130 NAGSDVVGMKCKADRVDGG-YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIE 188
NAG+D G + A + D G Y +NG+K++ TNG A +V+A TD G+ GITAFI+E
Sbjct: 132 NAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILE 191
Query: 189 KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLA 248
G PGF+ +K DK+G+ S T ELVF++ VP EN+LG+EGKG + M LD R+ +A
Sbjct: 192 DGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVA 251
Query: 249 AGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 308
A LGI +A L + Y +QR QFG+PL +FQ I K ADM ++++R+ VY A
Sbjct: 252 AQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQ 311
Query: 309 NGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 368
GK D A A++ A +VT +A+Q GG GY EY R +RDAK+ +I GT+E
Sbjct: 312 EGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNE 371
Query: 369 IRRMIIGRALLK 380
++ M+ G ALL+
Sbjct: 372 VQLMVTGGALLR 383
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/371 (38%), Positives = 200/371 (53%), Gaps = 8/371 (2%)
Query: 11 CASFFTKKQKHSAAFSSTSLLFDDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXH 70
C F K+ AA LF Q+ K MG L + P+E +
Sbjct: 17 CRDFAEKELFPIAAQVDKEHLFPAAQV------KKMGGLGLLAMDVPEELGGAGLDYLAY 70
Query: 71 CIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN 130
IAMEEISR S G+ +++L + +++ GS QK ++ SG+ +G A+SEP
Sbjct: 71 AIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPG 130
Query: 131 AGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 189
GSD G R +G +++NG K W TN A VV+A TD +K I+AF++
Sbjct: 131 NGSDA-GAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPM 189
Query: 190 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 249
PG + +K DKLG+RGS T L+FE+C +P +++LG+ G G + M LD+ R+ +A+
Sbjct: 190 PTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIAS 249
Query: 250 GPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN 309
LGI Q LD + Y R FG PL + Q IQ K ADM AL+S+R + A DN
Sbjct: 250 QALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDN 309
Query: 310 GKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEI 369
K K+ A L A+E AT ++ QAIQ LGG GYV E R RDA++ EI GTSEI
Sbjct: 310 KKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEI 369
Query: 370 RRMIIGRALLK 380
+R++I LL+
Sbjct: 370 QRLVIAGHLLR 380
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 195/337 (57%), Gaps = 5/337 (1%)
Query: 44 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHG 103
K + L G+T P+E +A+EE++ A SV + S L L+R G
Sbjct: 41 KALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFG 100
Query: 104 SPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 163
S AQK +YL L GE +GA ++EP AGSD ++ +A RV GG+++NG K W T+
Sbjct: 101 SEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGH 160
Query: 164 AQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNE 223
A VV A+T+ KGI+AF++EKG PG S + +K+G+ + T E+ E FVP E
Sbjct: 161 AHLYVVMARTE-----KGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEE 215
Query: 224 NVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQ 283
N+LG+EG+G+ ++GLD R+ +AA +GI + ++ Y +REQFG+ L E Q I
Sbjct: 216 NLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIA 275
Query: 284 GKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNG 343
K ADM+ + ++R+ V AR D G+ + + L A+ A +VT +A+Q LGG G
Sbjct: 276 FKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYG 335
Query: 344 YVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380
Y +Y R RDAK+ EI GTSEI+R++I R L +
Sbjct: 336 YHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 167/288 (57%)
Query: 92 SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYII 151
S+L I ++ G+ QK+++L L + A A+SEP GSD +K +A R Y++
Sbjct: 90 SDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVL 149
Query: 152 NGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 211
NG KMW +NG A+ +VV+A + + KG+ A ++E+G PGF + K+G R S T
Sbjct: 150 NGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTY 209
Query: 212 ELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQ 271
ELVFE+ VP EN LG+EG+G + M L+ R+ +AAG +G+ + LD Y ++RE
Sbjct: 210 ELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREA 269
Query: 272 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQV 331
FG P+ FQ IQ K DM ++++R Y Y A D G A A+E A +
Sbjct: 270 FGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEA 329
Query: 332 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 379
QAIQ GG GYV E+ +LLRD KL +I GT+EI+R+II R +L
Sbjct: 330 ANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 377
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 217 bits (553), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 184/331 (55%), Gaps = 2/331 (0%)
Query: 51 LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK 110
I P+E CI +EE++R S L A + L L+ GS K +
Sbjct: 64 FSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASL-IPAVNKLGTMGLILRGSEELKKQ 122
Query: 111 YLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY 170
LP + SGE + + A+SE AGSD M+ +A +I+NG+K W TNG + V
Sbjct: 123 VLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVM 182
Query: 171 AKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 230
A TD G+ GI+AF++ K GF+ K KLG++GS T EL FENC +P + ++G+ G
Sbjct: 183 AVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPG 242
Query: 231 KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMY 290
G ++ LD R + A +GI Q LD + Y ++R+QFGRP+ + Q +Q ADM
Sbjct: 243 TGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMA 302
Query: 291 TALQSSRSYVYSVARDCDNGKVDPKDCAGVILC-AAERATQVTLQAIQCLGGNGYVNEYA 349
++++R VYS A + G+ D + C A++ A +VT A+Q GG GY ++
Sbjct: 303 MKIEAARLMVYSAAARAERGEGDLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFP 362
Query: 350 TGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380
R++RDAK+ +I GT++I+R+++ RALL+
Sbjct: 363 VERMMRDAKITQIYEGTNQIQRVVMSRALLR 393
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 197/352 (55%), Gaps = 4/352 (1%)
Query: 33 DDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHS 92
D T +L + + F + G P+ +E I+ G++ L+ +H+
Sbjct: 34 DRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHN 93
Query: 93 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 152
+L ++ GS AQK+ +LPKL SGE +GA ++EP +GSD +K KA++V+GG+ +N
Sbjct: 94 SLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLN 153
Query: 153 GNKMWCTNGPVAQTLVVYAKTDIKAGS----KGITAFIIEKGMPGFSTAQKLDKLGMRGS 208
G K + T G VA VV A+TD +GI+AF + G +K +KLG+ S
Sbjct: 154 GTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTAS 213
Query: 209 DTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQ 268
DT +L+ E+ FVP E +LG+ GKG Y ++ LD R+ +AA +G+ QA LD L Y +
Sbjct: 214 DTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKG 273
Query: 269 REQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERA 328
RE FGRP+ EF+ + K A+ T L+++R A D G+ + A L A+E A
Sbjct: 274 REAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAA 333
Query: 329 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380
+ +AIQ LGG GYV +Y R RDA+L IG GTSEI +++I R LL+
Sbjct: 334 VKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLE 385
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 181/329 (55%), Gaps = 3/329 (0%)
Query: 51 LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKD 109
L GI E + +EE+++ SV + + N IN L+R HG+ QK
Sbjct: 74 LMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKA 132
Query: 110 KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 169
YLP+L + E VG+ +SE AGSD +K +AD+ Y++NG+KMW ++ A +V
Sbjct: 133 TYLPQLTT-EKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLV 191
Query: 170 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 229
A D G KGIT+F++++ PG + +KLG+R S TC L FEN VP N+LGQ
Sbjct: 192 MANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQI 251
Query: 230 GKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADM 289
G G + L+ R+ +AA LG+ Q C D +PY+++R QFG+ L +FQ +Q + A +
Sbjct: 252 GHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHV 311
Query: 290 YTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 349
T L+++R Y+ AR + GK K+ + A+E A Q T + I+ +GG GY +Y
Sbjct: 312 ATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYP 371
Query: 350 TGRLLRDAKLYEIGAGTSEIRRMIIGRAL 378
+ RDAK+ I G S I+ I + +
Sbjct: 372 VEKYFRDAKIGTIYEGASNIQLNTIAKHI 400
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 178/333 (53%), Gaps = 5/333 (1%)
Query: 46 MGNFNLHGITAPQEX--XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHG 103
MG G P+E I EEI+R S ++ + C ++ +G
Sbjct: 46 MGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYG 105
Query: 104 SPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 163
S A K KY+PKL S E +G ++EP+AGSDV+ M A+ +++NG+K W +N
Sbjct: 106 SEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQ 165
Query: 164 AQTLVVYAKTDIKAGSKGITAFIIE-KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPN 222
A L+ YA TD AGS+G++AF+IE + PG T+ L+KLG S T EL +N VP
Sbjct: 166 ADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSN-LEKLGSHASPTGELFLDNVKVPK 224
Query: 223 ENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFI 282
EN+LG+ G G ++ L+ RL AAG +G+ QACLD + Y +R QFG+P+G+FQ
Sbjct: 225 ENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMN 284
Query: 283 QGKTADMYTALQSSRSYVYSVARDCDNGKVDPK-DCAGVILCAAERATQVTLQAIQCLGG 341
Q A M ++++R Y A D G+++ D A A E ++ A++ LG
Sbjct: 285 QDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGA 344
Query: 342 NGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 374
GY EY R RDA Y + G++ I +MII
Sbjct: 345 YGYSTEYPVARFYRDAPTYYMVEGSANICKMII 377
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 173/311 (55%), Gaps = 2/311 (0%)
Query: 70 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 129
+ + + E GS + G H+++ + +G+ QK K+LPK ++GE + A+AM+EP
Sbjct: 73 YSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEP 132
Query: 130 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG--SKGITAFII 187
AGSD+ + A + YI+NG K + TNG A +VV KTD +A +GI+ ++
Sbjct: 133 GAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRGISLLVV 192
Query: 188 EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVL 247
E+ PGF+ +KL+K+G+ DT EL F++ VP N+LG+EGKG Y +M L ERLV+
Sbjct: 193 ERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVV 252
Query: 248 AAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDC 307
A + + YV+QR FG+ + EFQ +Q + A+M T + R++V V +
Sbjct: 253 AIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEH 312
Query: 308 DNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS 367
GK + + E A +V +A+Q GG GY+ EY R RD + I AGT+
Sbjct: 313 MAGKQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTN 372
Query: 368 EIRRMIIGRAL 378
E+ + II R L
Sbjct: 373 EMMKTIIARQL 383
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 184/359 (51%), Gaps = 21/359 (5%)
Query: 39 DVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQ 98
+V L + G L I P+E + EE+S SG ++YGAH+++
Sbjct: 62 NVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEELS-GSGGFSVTYGAHTSIGTLP 120
Query: 99 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKM 156
LV G+ QK KYLPKL SGE + A ++EP +GSD + K +A + G YI+NG K
Sbjct: 121 LVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQ 180
Query: 157 WCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFE 216
W +N A V+AK D + TAF++E+ PG S + K+G++ S T +++ E
Sbjct: 181 WISNAGFAHLFTVFAKVD----GEHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILE 236
Query: 217 NCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPL 276
+ VP ENVLG+ GKG + + L++ R L AG +G + L++ Y QR QFGRP+
Sbjct: 237 DVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPI 296
Query: 277 GEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTL--- 333
G F IQ K +M + + ++ S VY D + K V+ E A + ++
Sbjct: 297 GRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKV 356
Query: 334 -----------QAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381
+ +Q GG GY EY R RDA++ I GT+EI R++I LL++
Sbjct: 357 LGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 174/342 (50%), Gaps = 2/342 (0%)
Query: 36 QLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLC 95
+ D +++ MG L G T P++ + + E+ R S+L
Sbjct: 48 ETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLV 107
Query: 96 INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNK 155
+ + GS AQK+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+K
Sbjct: 108 MVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSK 167
Query: 156 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVF 215
MW TN P+A VV+AK D + G I FI+EKG G S K+G+R S T E+V
Sbjct: 168 MWITNSPIADVFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVL 226
Query: 216 ENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP 275
+ FVP EN+L KG+ + L+ R +A G LG ++C + YV R+QFGRP
Sbjct: 227 DEAFVPEENILPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRP 285
Query: 276 LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQA 335
L Q IQ K ADM T + V + R D G + + + + +A + A
Sbjct: 286 LAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLA 345
Query: 336 IQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 377
LGGNG +E+ R L + ++ GT +I +I+GRA
Sbjct: 346 RDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 387
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 174/342 (50%), Gaps = 2/342 (0%)
Query: 36 QLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLC 95
+ D +++ MG L G T P++ + + E+ R S+L
Sbjct: 52 ETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLV 111
Query: 96 INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNK 155
+ + GS AQK+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+K
Sbjct: 112 MVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSK 171
Query: 156 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVF 215
MW TN P+A VV+AK D + G I FI+EKG G S K+G+R S T E+V
Sbjct: 172 MWITNSPIADVFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVL 230
Query: 216 ENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP 275
+ FVP EN+L KG+ + L+ R +A G LG ++C + YV R+QFGRP
Sbjct: 231 DEAFVPEENILPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRP 289
Query: 276 LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQA 335
L Q IQ K ADM T + V + R D G + + + + +A + A
Sbjct: 290 LAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLA 349
Query: 336 IQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 377
LGGNG +E+ R L + ++ GT +I +I+GRA
Sbjct: 350 RDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 391
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 174/342 (50%), Gaps = 2/342 (0%)
Query: 36 QLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLC 95
+ D +++ MG L G T P++ + + E+ R S+L
Sbjct: 49 ETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLV 108
Query: 96 INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNK 155
+ + GS AQK+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+K
Sbjct: 109 MVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSK 168
Query: 156 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVF 215
MW TN P+A VV+AK D + G I FI+EKG G S K+G+R S T E+V
Sbjct: 169 MWITNSPIADVFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVL 227
Query: 216 ENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP 275
+ FVP EN+L KG+ + L+ R +A G LG ++C + YV R+QFGRP
Sbjct: 228 DEAFVPEENILPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRP 286
Query: 276 LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQA 335
L Q IQ K ADM T + V + R D G + + + + +A + A
Sbjct: 287 LAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLA 346
Query: 336 IQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 377
LGGNG +E+ R L + ++ GT +I +I+GRA
Sbjct: 347 RDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 388
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 187/339 (55%), Gaps = 3/339 (0%)
Query: 42 LWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR 101
+++ +G L + P+E + +EEI+ SV ++ HS L + L+
Sbjct: 52 VFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLV 110
Query: 102 HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 161
G+ QK ++LP ++SGE +GA ++SEP AGSD ++C A DGGY+ING+K W T+G
Sbjct: 111 FGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHG 170
Query: 162 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP 221
A ++A+T GS+G++ F++ PG S + +K+G+ T ++N +
Sbjct: 171 GKADFYTLFARTG--EGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARID 228
Query: 222 NENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQF 281
+ +G+EG+G+ + S LD RL +AA G+ QA LD + Y +R FGR + + Q
Sbjct: 229 ADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQG 288
Query: 282 IQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGG 341
+ ADM A+ ++R+ AR D G+ + + L A + A +VT A+Q GG
Sbjct: 289 LGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGG 348
Query: 342 NGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380
GY +Y R +R+AK+ +I GT++I+R++I R L +
Sbjct: 349 VGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 188/375 (50%), Gaps = 15/375 (4%)
Query: 15 FTKKQKHSAA----FSSTSLL-----FDDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXX 65
FT++QK A F+ ++ +D T V L + L P+
Sbjct: 16 FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 75
Query: 66 XXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGAL 124
C+ EE+ A G G+ N L ++ G+ QK KYL ++ + A
Sbjct: 76 GTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAY 133
Query: 125 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSKG 181
++EP AGSDV G+K KA++ YIING KMW TNG A + A++D +K
Sbjct: 134 CVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKA 193
Query: 182 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 241
T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G V M D
Sbjct: 194 FTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFD 253
Query: 242 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVY 301
ER V+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M ++ +R
Sbjct: 254 KERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQ 313
Query: 302 SVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE 361
A + D+G+ + + A + A Q+ A+Q LGGNG+ EY +L+RDAK+Y+
Sbjct: 314 RAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQ 373
Query: 362 IGAGTSEIRRMIIGR 376
I GTS+I+R+I+ R
Sbjct: 374 IYGGTSQIQRLIVAR 388
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 182/350 (52%), Gaps = 8/350 (2%)
Query: 33 DDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHS 92
D ++ + W+ + G+ P E + +E + VG++ GAH
Sbjct: 75 DALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQ 134
Query: 93 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YI 150
++ ++ G+ AQK+KYLPKL SGE V A ++EP++GSD ++ A G Y
Sbjct: 135 SIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYT 194
Query: 151 INGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFIIEKGMPGFSTAQKLDKLGM 205
+NG+K+W +NG +A V+AKT + + G ITAF++E+G G + K+G+
Sbjct: 195 LNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGI 254
Query: 206 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPY 265
+ S+T E+ F+ VP+ENVLG+ G G V M L+ R +AA G M+ + + +
Sbjct: 255 KASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDH 314
Query: 266 VRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI-LCA 324
R QFG + F IQ K A M + S Y V+ + D G D + A + +
Sbjct: 315 ATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFG 374
Query: 325 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 374
+E A +VT + IQ +GG G++ E R+LRD +++ I GT++I R+ +
Sbjct: 375 SEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFV 424
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 182/350 (52%), Gaps = 8/350 (2%)
Query: 33 DDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHS 92
D ++ + W+ + G+ P E + +E + VG++ GAH
Sbjct: 55 DALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQ 114
Query: 93 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YI 150
++ ++ G+ AQK+KYLPKL SGE V A ++EP++GSD ++ A G Y
Sbjct: 115 SIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYT 174
Query: 151 INGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFIIEKGMPGFSTAQKLDKLGM 205
+NG+K+W +NG +A V+AKT + + G ITAF++E+G G + K+G+
Sbjct: 175 LNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGI 234
Query: 206 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPY 265
+ S+T E+ F+ VP+ENVLG+ G G V M L+ R +AA G M+ + + +
Sbjct: 235 KASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDH 294
Query: 266 VRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI-LCA 324
R QFG + F IQ K A M + S Y V+ + D G D + A + +
Sbjct: 295 ATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFG 354
Query: 325 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 374
+E A +VT + IQ +GG G++ E R+LRD +++ I GT++I R+ +
Sbjct: 355 SEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFV 404
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 176/349 (50%), Gaps = 6/349 (1%)
Query: 32 FDDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAH 91
+D T V L K L P+ C+ EE+ A G G+
Sbjct: 42 YDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIE 99
Query: 92 SN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYI 150
+N L L+ G+ Q+ KYL ++ + A ++EP AGSDV G+K KA++ YI
Sbjct: 100 ANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYI 159
Query: 151 INGNKMWCTNGPVAQTLVVYAKTDIKA---GSKGITAFIIEKGMPGFSTAQKLDKLGMRG 207
ING KMW TNG A + A++D SK T FI+E PG +K +G R
Sbjct: 160 INGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRC 219
Query: 208 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVR 267
SDT +VFE+ VP ENVL EG G + M D R +AAG +G+ Q LD Y
Sbjct: 220 SDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYAL 279
Query: 268 QREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAER 327
+R+ FG+ L E Q I ADM ++ +R A + D+G+ + + AA+
Sbjct: 280 ERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADI 339
Query: 328 ATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGR 376
A Q+ A+Q GGNG+ EY +L+RDAK+Y+I GT++I+R+II R
Sbjct: 340 ANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAR 388
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 176/349 (50%), Gaps = 6/349 (1%)
Query: 32 FDDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAH 91
+D T V L K L P+ C+ EE+ A G G+
Sbjct: 32 YDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIE 89
Query: 92 SN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYI 150
+N L L+ G+ Q+ KYL ++ + A ++EP AGSDV G+K KA++ YI
Sbjct: 90 ANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYI 149
Query: 151 INGNKMWCTNGPVAQTLVVYAKTDIKA---GSKGITAFIIEKGMPGFSTAQKLDKLGMRG 207
ING KMW TNG A + A++D SK T FI+E PG +K +G R
Sbjct: 150 INGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRC 209
Query: 208 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVR 267
SDT +VFE+ VP ENVL EG G + M D R +AAG +G+ Q LD Y
Sbjct: 210 SDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYAL 269
Query: 268 QREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAER 327
+R+ FG+ L E Q I ADM ++ +R A + D+G+ + + AA+
Sbjct: 270 ERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADI 329
Query: 328 ATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGR 376
A Q+ A+Q GGNG+ EY +L+RDAK+Y+I GT++I+R+II R
Sbjct: 330 ANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAR 378
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 187/375 (49%), Gaps = 15/375 (4%)
Query: 15 FTKKQKHSAA----FSSTSLL-----FDDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXX 65
FT++QK A F+ ++ +D T V L + L P+
Sbjct: 16 FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 75
Query: 66 XXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGAL 124
C+ EE+ A G G+ N L ++ G+ QK KYL ++ + A
Sbjct: 76 GTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAY 133
Query: 125 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSKG 181
++EP AGSDV G+K KA++ YIING KMW TNG A + A++D +K
Sbjct: 134 CVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKA 193
Query: 182 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 241
T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G V M D
Sbjct: 194 FTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFD 253
Query: 242 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVY 301
R V+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M ++ +R
Sbjct: 254 KTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQ 313
Query: 302 SVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE 361
A + D+G+ + + A + A Q+ A+Q LGGNG+ EY +L+RDAK+Y+
Sbjct: 314 RAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQ 373
Query: 362 IGAGTSEIRRMIIGR 376
I GTS+I+R+I+ R
Sbjct: 374 IYEGTSQIQRLIVAR 388
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 187/375 (49%), Gaps = 15/375 (4%)
Query: 15 FTKKQKHSAA----FSSTSLL-----FDDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXX 65
FT++QK A F+ ++ +D T V L + L P+
Sbjct: 41 FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 100
Query: 66 XXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGAL 124
C+ EE+ A G G+ N L ++ G+ QK KYL ++ + A
Sbjct: 101 GTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAY 158
Query: 125 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSKG 181
++EP AGSDV G+K KA++ YIING KMW TNG A + A++D +K
Sbjct: 159 CVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKA 218
Query: 182 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 241
T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G V M D
Sbjct: 219 FTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFD 278
Query: 242 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVY 301
R V+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M ++ +R
Sbjct: 279 KTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQ 338
Query: 302 SVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE 361
A + D+G+ + + A + A Q+ A+Q LGGNG+ EY +L+RDAK+Y+
Sbjct: 339 RAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQ 398
Query: 362 IGAGTSEIRRMIIGR 376
I GTS+I+R+I+ R
Sbjct: 399 IYEGTSQIQRLIVAR 413
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/365 (32%), Positives = 179/365 (49%), Gaps = 26/365 (7%)
Query: 38 QDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCIN 97
+ V L K G L G P+E + E+ SRA G +++GAH +
Sbjct: 66 RSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAGG-FAITHGAHVGIGSL 124
Query: 98 QLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNK 155
+V G+ QK KYLP L +GE + A A++EP +GSD +G K A G Y++NG K
Sbjct: 125 PIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEK 184
Query: 156 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVF 215
W TN A +VYAK D + +AFI+EK G ST+ + K G++ S T L+
Sbjct: 185 QWITNSAFADVFIVYAKID----GEHFSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLIL 240
Query: 216 ENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP 275
E+ VP EN+LG+ GKG + + L++ R L G +G + +++ Y QR+QF +P
Sbjct: 241 EDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQP 300
Query: 276 LGEFQFIQGKTADMYTALQSSRSYVYSV-----ARDCDNGKVDPKDCAGVILCAAERATQ 330
+ F IQ K A+ ++ S VY +R + + KD V AE A +
Sbjct: 301 IARFPLIQEKLANXAAKTYAAESSVYRTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIE 360
Query: 331 VTL--------------QAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGR 376
+L + +Q GG G+ EY R RD+++ I GT+EI R+I+
Sbjct: 361 CSLNKVFGSEVLDYTVDEGVQIHGGYGFXAEYEIERXYRDSRINRIFEGTNEINRLIVPG 420
Query: 377 ALLKQ 381
L++
Sbjct: 421 TFLRK 425
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 161/296 (54%), Gaps = 2/296 (0%)
Query: 87 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD 146
+Y + N+C + G+ Q+ K+ P L + E + ++EP +GSD + A +
Sbjct: 99 AYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQG 158
Query: 147 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 206
YI+NG+K + + + VV +T G KGI+ ++EKG PG S +K K+G
Sbjct: 159 DHYILNGSKAFISGAGESDIYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKKEKKVGWN 217
Query: 207 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYV 266
T ++FE+C VP N +G EG+G + + GL+ R+ +A+ LG A + + ++
Sbjct: 218 SQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHL 277
Query: 267 RQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD-CAGVILCAA 325
R+QFG PL Q++Q ADM T L ++R V + A + D C+ L A
Sbjct: 278 NVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFAT 337
Query: 326 ERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381
+ + QA+Q GG GY+ +YA + +RD+++++I G++E+ R++I R+LL++
Sbjct: 338 DECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE 393
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 142/277 (51%), Gaps = 2/277 (0%)
Query: 94 LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIING 153
+ + ++ G D Y+ + GE +GALA++EP GSDV ++ +AD Y+ING
Sbjct: 115 IAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVING 174
Query: 154 NKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCEL 213
K + T+G A +V A+T G+ G++ +++KG PGF +KLDK+G R SDT EL
Sbjct: 175 AKTYITSGVRADYVVTAARTG-GPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAEL 233
Query: 214 VFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 273
+ + VP N++G E G + + ER+ LA Q CLD+ + + R R+ FG
Sbjct: 234 SYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFG 293
Query: 274 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD-PKDCAGVILCAAERATQVT 332
RPL Q +Q A M + +R Y V G+ + + A E V
Sbjct: 294 RPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVA 353
Query: 333 LQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEI 369
QA+Q GG GY+ E R RD ++ IG GT+EI
Sbjct: 354 NQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEI 390
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 165/329 (50%), Gaps = 2/329 (0%)
Query: 51 LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKD 109
L GI P+E + E I A GS G+ ++ + + + +GS A +
Sbjct: 74 LLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIE 133
Query: 110 KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 169
+Y+ ++G+ +G+L ++EP AGSDV ++ +A R Y++NG K + T+G A +
Sbjct: 134 RYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTT 193
Query: 170 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 229
+T G G++ +I+K PGF +++LDK+G R SDT EL F + VP +N++G E
Sbjct: 194 AVRTG-GPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAE 252
Query: 230 GKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADM 289
G +M ERL +A LD+ + R+RE FGRPL Q I+ K A+M
Sbjct: 253 NSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEM 312
Query: 290 YTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 349
+ + +Y +V + G+ + + A V +A+Q GG GY+ E
Sbjct: 313 ARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESE 372
Query: 350 TGRLLRDAKLYEIGAGTSEIRRMIIGRAL 378
R RD ++ IG GT+EI +I + +
Sbjct: 373 IERHYRDCRILGIGGGTNEIMNEVIAKRI 401
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 140/286 (48%), Gaps = 6/286 (2%)
Query: 93 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 152
+L + + GS QKD++LP + SG +G ++EP+ GSD GM+ +A R +I+
Sbjct: 117 SLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILT 176
Query: 153 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 212
G KMW TNG VA VV+A+TD +GI F++ PGF+ K+ +R S T E
Sbjct: 177 GTKMWITNGSVADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSE 231
Query: 213 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 272
LV + +P+ L + + L+ R + G LG + CL+ L Y REQF
Sbjct: 232 LVLDGVRLPDSARL-PGATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQF 290
Query: 273 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVT 332
RP+G FQ Q K ADM + R D G++ P+ + L A ++
Sbjct: 291 DRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIA 350
Query: 333 LQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 378
A LG +G EY R + + GTSE+ +IIG+AL
Sbjct: 351 RTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQAL 396
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 144/286 (50%), Gaps = 6/286 (2%)
Query: 93 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 152
+L + + R+GS QK+++LP+L +G+ +G ++EP+ GS+ GM+ +A R +I+N
Sbjct: 112 SLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILN 171
Query: 153 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 212
G KMW TNG +A V+A+TD GI F++ PGF+ + KL +R S T E
Sbjct: 172 GTKMWITNGNLADVATVWAQTD-----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSE 226
Query: 213 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 272
LV +N +P L +G+ +S L+ R + G LG + L+ + Y + RE F
Sbjct: 227 LVLDNVRLPASAQL-PLAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVF 285
Query: 273 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVT 332
+PL +Q Q K A+M L + R D V P+ + L A +
Sbjct: 286 DKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAIA 345
Query: 333 LQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 378
+ LGG+G EY+ R + + GTSE+ + IG+AL
Sbjct: 346 RECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKAL 391
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 9/306 (2%)
Query: 76 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 135
E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++EPN+GSD
Sbjct: 83 ELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDP 142
Query: 136 VGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPG 193
M+ +A + + Y +NG K W TN P+A VV+A+ + I F++EKGM G
Sbjct: 143 SSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRG 198
Query: 194 FSTAQKLDKLGMRGSDTCELVFENCFVPNENVL-GQEGKGVYVMMSGLDLERLVLAAGPL 252
S + K +R S T ++ + VP ENVL G G L+ R +A G L
Sbjct: 199 LSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLG--GPFGCLNNARYGIAWGVL 256
Query: 253 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV 312
G + CL Y R QFG PL Q IQ K ADM T + + R D K
Sbjct: 257 GASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKA 316
Query: 313 DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM 372
P+ + + +A + QA LGGNG +EY R + + GT +I +
Sbjct: 317 APEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHAL 376
Query: 373 IIGRAL 378
I+GRA+
Sbjct: 377 ILGRAI 382
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 9/306 (2%)
Query: 76 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 135
E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++EPN+GSD
Sbjct: 85 ELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDP 144
Query: 136 VGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPG 193
M+ +A + + Y +NG K W TN P+A VV+A+ + I F++EKGM G
Sbjct: 145 SSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRG 200
Query: 194 FSTAQKLDKLGMRGSDTCELVFENCFVPNENVL-GQEGKGVYVMMSGLDLERLVLAAGPL 252
S + K +R S T ++ + VP ENVL G G L+ R +A G L
Sbjct: 201 LSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLG--GPFGCLNNARYGIAWGVL 258
Query: 253 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV 312
G + CL Y R QFG PL Q IQ K ADM T + + R D K
Sbjct: 259 GASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKA 318
Query: 313 DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM 372
P+ + + +A + QA LGGNG +EY R + + GT +I +
Sbjct: 319 APEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHAL 378
Query: 373 IIGRAL 378
I+GRA+
Sbjct: 379 ILGRAI 384
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 9/306 (2%)
Query: 76 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 135
E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++EPN+GSD
Sbjct: 85 ELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDP 144
Query: 136 VGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPG 193
M+ +A + + Y +NG K W TN P+A VV+A+ + I F++EKGM G
Sbjct: 145 SSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRG 200
Query: 194 FSTAQKLDKLGMRGSDTCELVFENCFVPNENVL-GQEGKGVYVMMSGLDLERLVLAAGPL 252
S + K +R S T ++ + VP ENVL G G L+ R +A G L
Sbjct: 201 LSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLG--GPFGCLNNARYGIAWGVL 258
Query: 253 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV 312
G + CL Y R QFG PL Q IQ K ADM T + + R D K
Sbjct: 259 GASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKA 318
Query: 313 DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM 372
P+ + + +A + QA LGGNG +EY R + + GT +I +
Sbjct: 319 APEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYDGTHDIHAL 378
Query: 373 IIGRAL 378
I+GRA+
Sbjct: 379 ILGRAI 384
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 153/308 (49%), Gaps = 6/308 (1%)
Query: 70 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 129
+ IA EI+R S HS+L + + GS AQK+KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 130 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 189
+ GSD G+ A +V+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 190 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG-LDLERLVLA 248
PG + +K+G+R +++ +N FVP+E+ L G + S L + R+++A
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVA 292
Query: 249 AGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 308
P+GI D+ Y+++R+QFG PL FQ Q K M +Q+ + + + +
Sbjct: 293 WQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYE 352
Query: 309 NGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 368
G++ P + + +A + + LGGNG + ++ + D + GT +
Sbjct: 353 TGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYD 412
Query: 369 IRRMIIGR 376
I ++ GR
Sbjct: 413 INTLVTGR 420
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 153/308 (49%), Gaps = 6/308 (1%)
Query: 70 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 129
+ IA EI+R S HS+L + + GS AQK+KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 130 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 189
+ GSD G+ A +V+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 190 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG-LDLERLVLA 248
PG + +K+G+R +++ +N FVP+E+ L G + S L + R+++A
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVA 292
Query: 249 AGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 308
P+GI D+ Y+++R+QFG PL FQ Q K M +Q+ + + + +
Sbjct: 293 WQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYE 352
Query: 309 NGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 368
G++ P + + +A + + LGGNG + ++ + D + GT +
Sbjct: 353 TGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYD 412
Query: 369 IRRMIIGR 376
I ++ GR
Sbjct: 413 INTLVTGR 420
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 160/360 (44%), Gaps = 17/360 (4%)
Query: 31 LFDDTQLQDVNLWKLMGNFNLH-----------GITAPQEXXXXXXXXXXHCIAMEEISR 79
+ L + W G F H G T P E + + E+ R
Sbjct: 25 FLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELER 84
Query: 80 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVG-M 138
+ S+L + + +GS QK ++LPKL GE VG ++EP+ GSD G M
Sbjct: 85 VDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNM 144
Query: 139 KCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQ 198
K +A R +++NG KMW TNG +A V++AK + + F++ PGF +
Sbjct: 145 KTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDE----GGEVLGFLVPTDTPGFQARE 200
Query: 199 KLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAC 258
K+ +R S T ELV E VP E++ + G+ +S L R +A G +G ++A
Sbjct: 201 VKRKMSLRASVTSELVLEEVRVP-ESLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAV 259
Query: 259 LDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCA 318
+ + + + R FG PL + Q +Q K A+M + +AR D GK+ P +
Sbjct: 260 YEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVS 319
Query: 319 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 378
+A Q A LGG+G EY R + + + GT ++ +++GR +
Sbjct: 320 LAKRQNVWKALQAARMARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREI 379
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 13/284 (4%)
Query: 101 RHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY-IINGNKMWCT 159
R G Q+ +L +L SG+ + A+ SE AGSD+ M+ + R+DG +++G+K+W T
Sbjct: 87 RLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRV-RLDGDTAVVDGHKVWTT 144
Query: 160 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCF 219
A LVV+ + +G+ ++ PG + G R + +L +
Sbjct: 145 AAAYADHLVVFGLQEDGSGA----VVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVR 200
Query: 220 VPNENVLGQEGKGVYVMMSG-LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGE 278
VP VL G + ++++ L R +A G +GI++AC + + R REQFGRPLG+
Sbjct: 201 VPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGD 260
Query: 279 FQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILC---AAERATQVTLQA 335
Q + G AD++TA Q + + D G P+ IL AAERA A
Sbjct: 261 HQLVAGHIADLWTAEQIAARVCEYASDHWDEGS--PEMVPATILAKHVAAERAAAGAATA 318
Query: 336 IQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 379
Q L G + R RDAKL EI G+SE+ R+++ + L
Sbjct: 319 AQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHAL 362
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 31/297 (10%)
Query: 104 SPAQKDKYLPKLISGEHVGAL----AMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWC 158
+P D+Y L+ G L M+E GSDV+ +A+R+ DG Y + G+K W
Sbjct: 158 TPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WF 216
Query: 159 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-GFSTAQKL----DKLGMRGSDTCEL 213
+ P + +V A+T + G++ F + + +P G A +L DKLG R + +CE+
Sbjct: 217 FSVPQSDAHLVLAQT-----AGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEV 271
Query: 214 VFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 273
F++ +LG EG+G+ +++ + R A G +M+ + + + QR FG
Sbjct: 272 EFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFG 328
Query: 274 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD---------CAGVILCA 324
PL + ++ + M L+ + ++ +AR D + D K+ A ++C
Sbjct: 329 NPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDR-RADAKEALWARLFTPAAKFVIC- 386
Query: 325 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381
+R +A++ LGG GY E RL R+ + I G+ I + + R L KQ
Sbjct: 387 -KRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 118/291 (40%), Gaps = 10/291 (3%)
Query: 102 HGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTN 160
+GS QK ++L L+ G M+EP+ A SD ++C R + Y+ING K W +
Sbjct: 130 YGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSG 189
Query: 161 G--PVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGS---DTCEL 213
P + +V +T + S K + ++ PG + L G + E+
Sbjct: 190 AGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEI 249
Query: 214 VFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 273
F VP N++ EG+G + L R+ +G+ + L ++ QR F
Sbjct: 250 HFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFK 309
Query: 274 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN-GKVDPKDCAGVILCAAERA-TQV 331
+ L + + A+ A++ R A D G K +I AA RA +++
Sbjct: 310 KKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKI 369
Query: 332 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 382
AIQ GG G +Y + ++ + G E+ I L+ Q
Sbjct: 370 VDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRDQ 420
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 118/291 (40%), Gaps = 8/291 (2%)
Query: 99 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 157
L R+GS QK+ +L L+ G+ A M+EP+ A SD M A +ING K W
Sbjct: 121 LHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWW 180
Query: 158 CT--NGPVAQTLVVYAKTDIKAGSKGITAFI-IEKGMPGFSTAQKLDKLGMRGSDTCELV 214
T P + ++ TD A + + + PG + + L +G V
Sbjct: 181 STGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGV 240
Query: 215 --FENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 272
F+N +P + + GKG + L R+ A +G+ + L+ R F
Sbjct: 241 VSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAF 300
Query: 273 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN-GKVDPKDCAGVILCAAER-ATQ 330
G+PL + + AD A+ +R V A D G + I AA A Q
Sbjct: 301 GKPLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQ 360
Query: 331 VTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381
V AIQ GG G N++ +A+ + G E+ R ++ R L +
Sbjct: 361 VIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAK 411
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 11/222 (4%)
Query: 147 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 206
GG++++G K + PV V+ A+TD G + + ++ + PGF+ D LGMR
Sbjct: 161 GGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMR 220
Query: 207 GSDTCELVFENCFVPNENVLGQEGKGVY--VMMSGLDLERLVLAAGPLGIMQACLDVVLP 264
S T ++VF++C +P ++VL ++ G +++G + + + +G+ QA D +
Sbjct: 221 ASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVA 280
Query: 265 YVRQREQFGRPLGEFQFIQGKTADMY-------TALQSSRSYVYSVARDCDN-GKVDPKD 316
+ +R + + + + +Y +AL ++ + ++ D D G+ +
Sbjct: 281 ALERRPEPPQ-AAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRH 339
Query: 317 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 358
L A ++ + +GG Y + RLLRD +
Sbjct: 340 FQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQ 381
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 127/323 (39%), Gaps = 46/323 (14%)
Query: 74 MEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAG 132
+ EI+ A GS+G +G H +N + +L+ GS Q++ ++ A SE N
Sbjct: 100 VREIAAADGSLGHLFGYHLTNAPMIELI--GSQEQEEHLYTQIAQNNWWTGNASSENN-- 155
Query: 133 SDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-ITAFIIEKG 190
S V+ K A DGGY++NG K +C+ + L V+ + +G I A I
Sbjct: 156 SHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTS 215
Query: 191 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG------LDLER 244
G + +GMR +D+ F N V + VLG V + + +
Sbjct: 216 RAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQ 275
Query: 245 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSY-VYSV 303
L+ A LGI LD Y R + + P G IQ T D YT RSY +++
Sbjct: 276 LIFANVYLGIAHGALDAAREYTRTQARPWTPAG----IQQATEDPYTI----RSYGEFTI 327
Query: 304 ARD----------------CDNGK-VDPKD-------CAGVILCAAERATQVTLQAIQCL 339
A D G + P+D +GV A A ++ + +
Sbjct: 328 ALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVI 387
Query: 340 GGNGYVNEYATGRLLRDAKLYEI 362
G G Y R R+ + + +
Sbjct: 388 GARGTHPRYGFDRFWRNVRTHSL 410
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 30/346 (8%)
Query: 33 DDTQLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXH-CIAMEEISRASGSVGLSYGAH 91
D T V ++ L G T P E A+ ++ A S L++
Sbjct: 35 DRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQ 94
Query: 92 --SNLCINQLVRHGSP---AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD 146
L + +HG+P A ++ L + GE A+ + V + +D
Sbjct: 95 LSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPG----VVTELHSDGA- 149
Query: 147 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 206
GG++++G K+ + P+A V+A+ GS + ++ + PG + D LGMR
Sbjct: 150 GGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMR 209
Query: 207 GSDTCELVFENCFVPNENVL--GQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLP 264
S T E+VF+ C V + +L G G +++G + + + GI QA D+ +
Sbjct: 210 ASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGIYAGIAQAARDIAVG 269
Query: 265 YVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV----DPKDCAGV 320
+ R G P + + A + T L + R+ V + + D V DP +
Sbjct: 270 FCAGRG--GEPRAGARAL---VAGLDTRLYALRTTVGAALTNADAASVDLSGDPDERGRR 324
Query: 321 I--------LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 358
+ + E A V + +GG Y + RL RD +
Sbjct: 325 MMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVR 370
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 124/306 (40%), Gaps = 34/306 (11%)
Query: 107 QKDKYLPKLISGE--HVGALAMSEPNAGSDVV-----GMKCKADRVDGG-YIINGNKMWC 158
Q ++L +SGE + +L SEP ++ + G + A R++G ++ING KMW
Sbjct: 113 QHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTA-RLEGDEWVINGEKMWA 171
Query: 159 TNGP--------VAQTLVVYAKTDIKAGSKGITAFII---------EKGMPGFSTAQKLD 201
TN +A + A T ++ G +I G F + +
Sbjct: 172 TNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVA 231
Query: 202 KLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDV 261
G + + N VP +NVL G+G V D +++ A +G+M+A D
Sbjct: 232 TPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDA 291
Query: 262 VLPYVRQREQFGR-PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPK----- 315
L + ++ + G PL E Q + + +++R+ + A +NG D
Sbjct: 292 ALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDYDARREL 351
Query: 316 DCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMII 374
A + C +E A + I +G + Y + LL A + I G IRR +
Sbjct: 352 ALAAKVFC-SEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHL 410
Query: 375 GRALLK 380
+ +LK
Sbjct: 411 QQLMLK 416
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 72 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 129
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 130 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 161
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 162 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 214
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 215 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 273
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 246 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 305
Query: 274 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 328
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 306 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 365
Query: 329 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 378
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 366 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVM 416
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 131/337 (38%), Gaps = 54/337 (16%)
Query: 72 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 129
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLXPVILCDSPSLQEKFLKPFISGEGEPLASLXHSEP 136
Query: 130 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 161
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 162 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 214
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 215 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 273
F VP+EN+L G K ++ + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAXSAALVGAXAIGTARAAFEEALVFAKSDTRGG 306
Query: 274 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 328
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEXAXQTKIYTTDVA 366
Query: 329 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 365
+ + A + +G Y + + RLL + Y + G
Sbjct: 367 VECVIDAXKAVGXKSYAKDXSFPRLLNEVXCYPLFDG 403
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 133/337 (39%), Gaps = 54/337 (16%)
Query: 72 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 129
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 130 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 161
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 162 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 214
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 215 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 273
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 306
Query: 274 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 328
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 366
Query: 329 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 365
+ + A++ +G Y + + RLL + Y + G
Sbjct: 367 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFEG 403
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 72 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 129
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 130 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 161
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 162 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 214
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 215 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 273
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 306
Query: 274 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 328
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 366
Query: 329 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 378
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 367 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 417
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 72 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 129
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 130 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 161
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 162 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 214
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 215 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 273
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 246 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 305
Query: 274 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 328
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 306 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 365
Query: 329 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 378
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 366 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 416
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 133/337 (39%), Gaps = 54/337 (16%)
Query: 72 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 129
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 130 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 161
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 162 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 214
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 215 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 273
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 306
Query: 274 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 328
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 366
Query: 329 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 365
+ + A++ +G Y + + RLL + Y + G
Sbjct: 367 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDG 403
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 72 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 129
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 130 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 161
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 162 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 214
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 215 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 273
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 246 FTEFHVPHENLLCTPGLKAQGLVETAFAMAAALVGAMAIGTARAAFEEALVFAKSDTRGG 305
Query: 274 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 328
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 306 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 365
Query: 329 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 378
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 366 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 416
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 91/228 (39%), Gaps = 32/228 (14%)
Query: 91 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 148
H + I + G+ Q++K+LP + +G A +E GS+V G++ A D
Sbjct: 121 HWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDE 180
Query: 149 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 195
++I+ +K W G V+ VVYA+ G+ FI++ K +PG +
Sbjct: 181 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVT 240
Query: 196 TAQKLDKLG---MRGSDTCELVFENCFVPNENVL------GQEGKGV------YVMMSGL 240
K G D L F++ +P + +L +EGK V ++ +
Sbjct: 241 VGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTM 300
Query: 241 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLG--EFQFIQGKT 286
R + A M + + Y R QFG G E Q I KT
Sbjct: 301 VYVRQSIVADASLAMSRAVCIATRYSAVRRQFGSQNGGQETQVIDYKT 348
>pdb|2RFQ|A Chain A, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|B Chain B, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|C Chain C, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|D Chain D, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
Length = 394
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 145 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKL 203
VDGGY +NG W ++G + V IK G +F+I + + + +
Sbjct: 129 VDGGYTVNGAWAW-SSGCDHASWAVLGGPVIKDGRPVDFVSFLIPR--EDYRIDDVWNVV 185
Query: 204 GMRGSDTCELVFENCFVPNENVL 226
G+RG+ + +V E+ FVP VL
Sbjct: 186 GLRGTGSNTVVVEDVFVPTHRVL 208
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 19/164 (11%)
Query: 91 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 148
H + + L+ + Q++++ + E G A +E G+ + G++ A D
Sbjct: 103 HLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQE 162
Query: 149 YIINGN-----KMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFII-------EKGMPGFS 195
+I+N K W G + +V A+ + G+ AF++ K +PG +
Sbjct: 163 FILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGIT 222
Query: 196 TAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK----GVYV 235
K G D L +N +P EN+L + + G YV
Sbjct: 223 VGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYV 266
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 32/228 (14%)
Query: 91 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 148
H + + + G+ Q+ K+L + +G A +E GS+V G++ A D
Sbjct: 102 HWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDE 161
Query: 149 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 195
++I+ +K W G V+ VVYA+ GI FI++ +P +
Sbjct: 162 FVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNIT 221
Query: 196 TAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQEGK----GVYV--------MMSGL 240
K+G D L+F++ +P + +L + K G YV + +
Sbjct: 222 VGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTM 281
Query: 241 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLG--EFQFIQGKT 286
R + A + + + Y R QFG G E Q I KT
Sbjct: 282 VYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKT 329
>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
Length = 394
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 145 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKL 203
VDGGY++NG+ W + A V IK G +F+I + + +
Sbjct: 129 VDGGYLVNGSWNWSSGCDHASWTFVGGPV-IKDGRPVDFGSFLIPRSE--YEIKDVWYVV 185
Query: 204 GMRGSDTCELVFENCFVPNENVL 226
G+RG+ + LV ++ FVP L
Sbjct: 186 GLRGTGSNTLVVKDVFVPRHRFL 208
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 203 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 257
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 267 IGYRGAGTFEFLFENGEFYFIEMNTRIQVAHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 326
Query: 258 CLDV 261
+ V
Sbjct: 327 EVHV 330
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 203 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 257
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 270 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 329
Query: 258 CLDV 261
+ V
Sbjct: 330 EVHV 333
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 203 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 257
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 270 IGYRGAGTFEFLFENGEFYFIKMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 329
Query: 258 CLDV 261
+ V
Sbjct: 330 EVHV 333
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 203 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 257
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 267 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 326
Query: 258 CLDV 261
+ V
Sbjct: 327 EVHV 330
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 203 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 257
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 270 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 329
Query: 258 CLDV 261
+ V
Sbjct: 330 EVHV 333
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 203 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 257
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 288 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 347
Query: 258 CLDV 261
+ V
Sbjct: 348 EVHV 351
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 203 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 257
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 287 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 346
Query: 258 CLDV 261
+ V
Sbjct: 347 EVHV 350
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 203 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 257
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 267 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 326
Query: 258 CLDV 261
+ V
Sbjct: 327 EVHV 330
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 203 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 257
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 287 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 346
Query: 258 CLDV 261
+ V
Sbjct: 347 EVHV 350
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 323 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 373
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 323 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 373
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 323 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 373
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 323 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 373
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 323 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 373
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 323 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 373
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 310 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 357
>pdb|2OR0|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Hydroxylase From Rhodococcus Sp. Rha1
pdb|2OR0|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Hydroxylase From Rhodococcus Sp. Rha1
Length = 414
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 18/127 (14%)
Query: 116 ISGEHVGALAMSEPNAGSDVVGMKCK------------ADRVDGGYIINGNKMWCTNGPV 163
I G H LA ++P ++ G A VDGGY++ G W +
Sbjct: 101 IVGVHPWELAFADPQVQEEIWGEDNDTWXASPYAPXGVATPVDGGYVLKGR--WSFSSGT 158
Query: 164 AQTLVVYAKTDIKAGSKGI-TAFIIEKGMPGFS---TAQKLDKLGMRGSDTCELVFENCF 219
+ + G GI T + +P D +G+RG+ + +L+ + F
Sbjct: 159 DHCQWAFLGAXVGDGEGGIATPSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAF 218
Query: 220 VPNENVL 226
VP L
Sbjct: 219 VPGYRTL 225
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna
Length = 382
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 84 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGM 138
VGL + + N + +LV +PA++ + L ++I G G LAM + VV +
Sbjct: 63 VGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDG---GLLAMCKDKFACRVVQL 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,878,573
Number of Sequences: 62578
Number of extensions: 448924
Number of successful extensions: 969
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 80
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)