Query 016808
Match_columns 382
No_of_seqs 140 out of 1270
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 1.6E-74 3.5E-79 504.7 22.7 351 6-368 47-398 (398)
2 KOG0140 Medium-chain acyl-CoA 100.0 9.7E-72 2.1E-76 479.3 27.1 348 33-381 54-405 (408)
3 KOG0141 Isovaleryl-CoA dehydro 100.0 2.4E-70 5.2E-75 471.1 25.8 364 6-380 51-419 (421)
4 PLN02519 isovaleryl-CoA dehydr 100.0 1.2E-63 2.5E-68 479.5 40.7 349 33-381 52-403 (404)
5 cd01157 MCAD Medium chain acyl 100.0 1.7E-63 3.6E-68 475.6 39.7 348 33-381 27-378 (378)
6 cd01156 IVD Isovaleryl-CoA deh 100.0 2.3E-63 4.9E-68 474.4 40.3 348 33-380 28-376 (376)
7 cd01151 GCD Glutaryl-CoA dehyd 100.0 2.7E-63 5.8E-68 474.9 40.7 344 33-381 39-383 (386)
8 cd01162 IBD Isobutyryl-CoA deh 100.0 4.5E-63 9.7E-68 471.8 40.3 347 33-381 27-375 (375)
9 cd01160 LCAD Long chain acyl-C 100.0 9.9E-63 2.2E-67 469.4 40.5 345 33-378 25-371 (372)
10 PRK03354 crotonobetainyl-CoA d 100.0 1.2E-62 2.5E-67 469.4 40.2 345 33-380 32-377 (380)
11 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 9.9E-63 2.1E-67 469.0 38.5 342 33-377 27-370 (372)
12 PRK12341 putative acyl-CoA deh 100.0 2E-62 4.3E-67 468.1 40.1 344 33-380 32-378 (381)
13 cd01158 SCAD_SBCAD Short chain 100.0 2.9E-62 6.3E-67 466.5 39.8 348 33-380 25-373 (373)
14 PTZ00461 isovaleryl-CoA dehydr 100.0 2.5E-62 5.5E-67 471.1 39.2 344 33-381 63-408 (410)
15 cd01161 VLCAD Very long chain 100.0 7.7E-62 1.7E-66 467.9 39.8 347 34-381 52-407 (409)
16 TIGR03203 pimD_small pimeloyl- 100.0 1E-61 2.2E-66 461.3 37.2 339 34-377 33-375 (378)
17 PLN02526 acyl-coenzyme A oxida 100.0 3.4E-61 7.4E-66 463.0 39.9 342 34-380 56-398 (412)
18 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.6E-60 5.7E-65 455.3 39.2 343 38-380 41-394 (394)
19 PRK09463 fadE acyl-CoA dehydro 100.0 3.6E-59 7.7E-64 467.7 39.7 339 35-374 106-466 (777)
20 PRK13026 acyl-CoA dehydrogenas 100.0 1.5E-58 3.4E-63 461.3 39.6 336 34-373 104-464 (774)
21 cd01153 ACAD_fadE5 Putative ac 100.0 2.3E-57 5E-62 436.3 40.2 332 41-377 40-405 (407)
22 COG1960 CaiA Acyl-CoA dehydrog 100.0 2E-57 4.4E-62 435.8 38.0 347 35-381 36-389 (393)
23 TIGR03204 pimC_large pimeloyl- 100.0 7.2E-57 1.6E-61 430.7 39.9 335 40-380 43-394 (395)
24 cd01152 ACAD_fadE6_17_26 Putat 100.0 3.3E-57 7.2E-62 432.0 35.8 340 34-380 31-380 (380)
25 KOG0137 Very-long-chain acyl-C 100.0 5.7E-58 1.2E-62 426.0 25.3 348 33-380 104-460 (634)
26 PTZ00456 acyl-CoA dehydrogenas 100.0 8.1E-56 1.8E-60 439.1 39.6 336 40-379 102-479 (622)
27 cd01163 DszC Dibenzothiophene 100.0 2.7E-56 5.9E-61 425.6 32.1 339 33-380 17-373 (377)
28 PLN02876 acyl-CoA dehydrogenas 100.0 3.9E-55 8.5E-60 452.4 38.9 344 38-381 440-819 (822)
29 PLN02636 acyl-coenzyme A oxida 100.0 2.9E-54 6.3E-59 431.8 36.9 340 35-380 92-485 (686)
30 cd01154 AidB Proteins involved 100.0 3.1E-53 6.8E-58 408.0 38.6 330 41-379 69-417 (418)
31 PLN02312 acyl-CoA oxidase 100.0 5.2E-53 1.1E-57 421.8 37.2 344 34-380 101-487 (680)
32 cd01159 NcnH Naphthocyclinone 100.0 2.9E-53 6.2E-58 403.6 26.0 332 33-380 17-370 (370)
33 PRK11561 isovaleryl CoA dehydr 100.0 6.8E-50 1.5E-54 388.5 37.1 326 41-380 90-441 (538)
34 cd00567 ACAD Acyl-CoA dehydrog 100.0 3.2E-49 6.8E-54 370.3 33.6 283 94-376 43-327 (327)
35 KOG0138 Glutaryl-CoA dehydroge 100.0 1.5E-49 3.2E-54 341.5 25.8 343 33-380 81-426 (432)
36 PTZ00460 acyl-CoA dehydrogenas 100.0 1.4E-47 3E-52 381.3 32.6 300 81-380 88-431 (646)
37 PTZ00457 acyl-CoA dehydrogenas 100.0 2.6E-47 5.7E-52 367.9 32.7 295 42-371 55-362 (520)
38 cd01150 AXO Peroxisomal acyl-C 100.0 1.6E-47 3.5E-52 381.4 31.6 315 66-380 80-444 (610)
39 PLN02443 acyl-coenzyme A oxida 100.0 5.7E-44 1.2E-48 356.0 31.5 293 88-380 99-440 (664)
40 KOG1469 Predicted acyl-CoA deh 100.0 3.4E-44 7.4E-49 304.1 15.9 335 46-380 36-382 (392)
41 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 2E-33 4.3E-38 259.9 19.7 343 35-381 74-465 (661)
42 TIGR02309 HpaB-1 4-hydroxyphen 100.0 6.6E-27 1.4E-31 225.7 25.7 239 100-346 119-391 (477)
43 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 4.7E-23 1E-27 170.8 18.5 150 230-379 1-150 (150)
44 KOG0136 Acyl-CoA oxidase [Lipi 99.9 1.6E-23 3.5E-28 198.8 16.9 300 82-381 105-449 (670)
45 COG2368 Aromatic ring hydroxyl 99.7 9.8E-15 2.1E-19 135.9 24.1 240 102-346 125-399 (493)
46 PF08028 Acyl-CoA_dh_2: Acyl-C 99.7 5E-16 1.1E-20 125.9 13.0 123 245-367 1-133 (134)
47 PF02771 Acyl-CoA_dh_N: Acyl-C 99.6 6.2E-16 1.3E-20 121.5 7.4 103 6-119 10-113 (113)
48 TIGR02310 HpaB-2 4-hydroxyphen 99.6 2.7E-13 5.8E-18 130.9 24.3 230 106-341 136-398 (519)
49 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 1.4E-14 3E-19 96.2 7.0 52 123-174 1-52 (52)
50 PF11794 HpaB_N: 4-hydroxyphen 99.0 2.1E-09 4.6E-14 95.3 10.8 121 106-226 123-263 (264)
51 PF03241 HpaB: 4-hydroxyphenyl 96.8 0.027 5.9E-07 48.7 12.2 72 275-346 43-119 (205)
52 PTZ00457 acyl-CoA dehydrogenas 91.8 2.7 5.9E-05 41.8 12.1 79 272-351 429-508 (520)
53 KOG0137 Very-long-chain acyl-C 85.3 21 0.00045 35.6 12.7 71 271-341 532-603 (634)
54 PF14749 Acyl-CoA_ox_N: Acyl-c 84.3 1 2.2E-05 35.5 3.0 33 88-120 92-124 (125)
55 PRK09463 fadE acyl-CoA dehydro 55.4 2.8E+02 0.0061 29.4 14.1 102 272-380 559-662 (777)
56 PF05284 DUF736: Protein of un 45.4 69 0.0015 24.4 5.5 65 152-220 15-80 (107)
57 PF02084 Bindin: Bindin; Inte 43.9 93 0.002 27.0 6.4 67 33-118 95-163 (238)
58 PF12584 TRAPPC10: Trafficking 34.1 1E+02 0.0022 25.0 5.1 45 143-200 65-114 (147)
59 PF04115 Ureidogly_hydro: Urei 31.1 1.1E+02 0.0024 25.4 5.0 48 153-201 80-128 (165)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-74 Score=504.72 Aligned_cols=351 Identities=40% Similarity=0.639 Sum_probs=334.6
Q ss_pred cHHHHhHHhhhhhhcccccccccccccccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCch
Q 016808 6 GARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 84 (382)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~ 84 (382)
+.|++.++...|-.+. -|+++.+| .+++.+.++|++++.+|++|||.|.++...+.++|+|++.|+++
T Consensus 47 tvrkfa~~~i~Plv~~-----------mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv 115 (398)
T KOG0139|consen 47 TVRKFAQEEIKPLVRE-----------MDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV 115 (398)
T ss_pred HHHHHHHHhcchHHHh-----------hhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence 4455555555554444 78899999 99999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCC
Q 016808 85 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 164 (382)
Q Consensus 85 a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a 164 (382)
+.....|+.+...+|..+|+++||+.|+|.+ .|+.+++|++|||++|||.....|+|+++++.|+|||.|.|+||+.+|
T Consensus 116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A 194 (398)
T KOG0139|consen 116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEA 194 (398)
T ss_pred eeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCccc
Confidence 9999999989999999999999999887775 588899999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHH
Q 016808 165 QTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLER 244 (382)
Q Consensus 165 ~~~lv~a~~~~~~~~~~~~~flVp~~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~ 244 (382)
++++|+|.+++..+.+++++|+||++.||+.+..+.+++|||++.++.|+|+||+||.+++||+.|.|+.+.+..++-+|
T Consensus 195 ~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gR 274 (398)
T KOG0139|consen 195 DWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGR 274 (398)
T ss_pred ceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccc
Confidence 99999999987778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHH
Q 016808 245 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCA 324 (382)
Q Consensus 245 ~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~ 324 (382)
+.++++.+|.++.|+|.++.|+++|.+||+++.++|.+|++|+++.+++|++|+++|++++.-+.+.|...+++|||+++
T Consensus 275 Igi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~a 354 (398)
T KOG0139|consen 275 IGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYA 354 (398)
T ss_pred eeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCceecccchHHHHHHhhccCcccCChHH
Q 016808 325 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 368 (382)
Q Consensus 325 ~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~ 368 (382)
++.+..+.+.|+|++||.||++++|.+|+|||++...|++|+++
T Consensus 355 se~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 355 SEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred hhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence 99999999999999999999999999999999999999999863
No 2
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=9.7e-72 Score=479.35 Aligned_cols=348 Identities=37% Similarity=0.593 Sum_probs=340.7
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
-|.++.|| +.++...++|+....+|++|||.|++..+.+.+.|+|+.+|.++...+..|+ ++.+++..+|+++||++|
T Consensus 54 ~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~ 132 (408)
T KOG0140|consen 54 YDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTGIQTAISIHN-LAAWPIILSGNEEQKKKY 132 (408)
T ss_pred hcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccchhHHHHHhccc-hhhhhehhcCcHHHHHhh
Confidence 78899999 9999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCC---CCCCCeEEEEEe
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK---AGSKGITAFIIE 188 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~---~~~~~~~~flVp 188 (382)
|++++....++++++|||+.|||...+.|+|++.+|.|+|||+|.|+||+++++|++|++|++++ ++.+.+..|+|+
T Consensus 133 lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe 212 (408)
T KOG0140|consen 133 LGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFVLARTDPDPKTPAGKAFTAFIVE 212 (408)
T ss_pred hhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEEEEecCCCCCCCCCcceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999886 567789999999
Q ss_pred CCCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016808 189 KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQ 268 (382)
Q Consensus 189 ~~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~ 268 (382)
.++||++.......+|.|.+++-.+.|+||+||.+++||.++.|+...+..++..|..+++.++|++.++++++++|+..
T Consensus 213 ~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~e 292 (408)
T KOG0140|consen 213 GDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGALGLAQRCLDEATKYALE 292 (408)
T ss_pred CCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccc
Q 016808 269 REQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEY 348 (382)
Q Consensus 269 r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~ 348 (382)
|++||.||++||.+|..|+||..+++.+|.+.+.+++.+|++.+..-.+++||+++++.+..++..++|++||.||.+++
T Consensus 293 RK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSiAK~fA~D~an~~at~AvQifGG~Gfn~eY 372 (408)
T KOG0140|consen 293 RKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASIAKLFATDTANQAATNAVQIFGGNGFNKEY 372 (408)
T ss_pred HHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHhhhhHHHHHHHHHHhhccCCccccc
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred hHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 016808 349 ATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 349 ~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
|.+++.||++.+.|++|+++++|..|+|.++.+
T Consensus 373 pVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~ 405 (408)
T KOG0140|consen 373 PVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQK 405 (408)
T ss_pred cHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 3
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-70 Score=471.07 Aligned_cols=364 Identities=71% Similarity=1.134 Sum_probs=348.1
Q ss_pred cHHHHhHHhhhhhhcccccccccccccccccCCc--H-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccC
Q 016808 6 GARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQD--V-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 82 (382)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~ 82 (382)
++++++.+.+.|+... -|..+.| . +.|+.+.+.|++|++.|++|||.|+++...+.++||+++++.
T Consensus 51 sv~kF~qeelaP~a~e-----------idk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g 119 (421)
T KOG0141|consen 51 SVRKFFQEELAPHASE-----------IDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASG 119 (421)
T ss_pred HHHHHHHHhhcchhhh-----------hhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcC
Confidence 5666666666665544 5666666 3 899999999999999999999999999999999999999999
Q ss_pred chhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCC
Q 016808 83 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 162 (382)
Q Consensus 83 ~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~ 162 (382)
.++..+..|++++...|...|+++|+++|+|++.+|+-+++.++|||+.|||+....++|++++++|+|||.|.|+||++
T Consensus 120 ~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~ 199 (421)
T KOG0141|consen 120 GVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGP 199 (421)
T ss_pred CcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhh
Q 016808 163 VAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 240 (382)
Q Consensus 163 ~a~~~lv~a~~~~~--~~~~~~~~flVp~~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~ 240 (382)
.||.++|.|.++.. +..+++++|+|+...||+...+..+++|||+++++++.|+|.+||+++++|..+.|+.+++.-+
T Consensus 200 ~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgL 279 (421)
T KOG0141|consen 200 DADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGL 279 (421)
T ss_pred CCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCC
Confidence 99999999999865 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHH
Q 016808 241 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGV 320 (382)
Q Consensus 241 ~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~a 320 (382)
+..|+.+++..+|+.+.++|.+..|+++|++||++|+.+|.+|.+++||+..+.+.|+++|.++...|.+..+...++.+
T Consensus 280 d~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~ 359 (421)
T KOG0141|consen 280 DLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGV 359 (421)
T ss_pred ChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceecccchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 321 ILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 321 k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
++|++|.+..++-.++|++||.||..++|..|++||++.+.|..||+++.+..|+|.+-+
T Consensus 360 il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~ 419 (421)
T KOG0141|consen 360 ILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNK 419 (421)
T ss_pred hhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999998854
No 4
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=1.2e-63 Score=479.52 Aligned_cols=349 Identities=91% Similarity=1.438 Sum_probs=327.3
Q ss_pred ccccCCcH-H--HHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHH
Q 016808 33 DDTQLQDV-N--LWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD 109 (382)
Q Consensus 33 ~d~~~~~~-~--~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~ 109 (382)
.|+.+.+| + +|+.|++.||+++.+|++|||.|+++.+.+.+++++++.|+++++++.+|.......+..+|+++|++
T Consensus 52 ~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~ 131 (404)
T PLN02519 52 IDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKE 131 (404)
T ss_pred HHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHH
Confidence 35556666 5 69999999999999999999999999999999999999999999988888756667889999999999
Q ss_pred hhhhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeC
Q 016808 110 KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 189 (382)
Q Consensus 110 ~~l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~ 189 (382)
+|++++.+|+.++++++|||++|+|...+.+++++++|||+|||+|.|+|++..+|+++|.++++++++.+++.+|+||+
T Consensus 132 ~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~ 211 (404)
T PLN02519 132 KYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDVAAGSKGITAFIIEK 211 (404)
T ss_pred HHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEEEEEeCCCCCCCeeEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999987544556789999999
Q ss_pred CCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016808 190 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 269 (382)
Q Consensus 190 ~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r 269 (382)
+.|||++.++|+++|+++++++++.|+||+||++++++.++.|+......+...++.+++.++|+++++++.+++|+++|
T Consensus 212 ~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R 291 (404)
T PLN02519 212 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQR 291 (404)
T ss_pred CCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998888877778889999999999999999999999999999
Q ss_pred hccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccch
Q 016808 270 EQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 349 (382)
Q Consensus 270 ~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 349 (382)
.+||+|+.++|.+|+++++|.+++++++++++.++..++.+.....+...+|+++++.+.+++..+++++||.||+++++
T Consensus 292 ~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~~ 371 (404)
T PLN02519 292 EQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERATQVALQAIQCLGGNGYINEYP 371 (404)
T ss_pred eeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCh
Confidence 99999999999999999999999999999999999999887656677888999999999999999999999999999999
Q ss_pred HHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 016808 350 TGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 350 l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
++|+|||++...+++|++++++..+++.++++
T Consensus 372 l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 372 TGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred HHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999875
No 5
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.7e-63 Score=475.60 Aligned_cols=348 Identities=36% Similarity=0.535 Sum_probs=322.9
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+.+.+| +.|+.|++.||+++.+|++|||.|+++.+.+.++|++++.|+++++.+..+. .+...+..+|+++|+++|
T Consensus 27 ~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~ 105 (378)
T cd01157 27 YDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIEANS-LGQMPVIISGNDEQKKKY 105 (378)
T ss_pred HHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhhh-hhHHHHHHhCCHHHHHHH
Confidence 45566788 9999999999999999999999999999999999999999999887765554 555667778999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCC---CCCCeEEEEEe
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSKGITAFIIE 188 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~---~~~~~~~flVp 188 (382)
++++.+|+.++++++|||+.|+|.....++++++++||+|||+|.|+|++..+||++|+++++++. +..++.+|+||
T Consensus 106 l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~~~~~~~~~~~~~lv~ 185 (378)
T cd01157 106 LGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKCPASKAFTGFIVE 185 (378)
T ss_pred HHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEEEEEeCCcccCCCCCceEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999986432 13568899999
Q ss_pred CCCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016808 189 KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQ 268 (382)
Q Consensus 189 ~~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~ 268 (382)
++.|||++.++|+++|++++++++++||||+||++++++.++.|+......+...|+.+++.++|+++++++.+++|+++
T Consensus 186 ~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~ 265 (378)
T cd01157 186 ADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALE 265 (378)
T ss_pred CCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998889888888888889999999999999999999999999
Q ss_pred hhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccc
Q 016808 269 REQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEY 348 (382)
Q Consensus 269 r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~ 348 (382)
|.+||+|+.++|.+|+++++|.+++++++++++.+++.++.+.......+++|+++++.+.++++.+++++||.||++++
T Consensus 266 R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 345 (378)
T cd01157 266 RKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAADIANQLATDAVQIFGGNGFNSEY 345 (378)
T ss_pred ccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 99999999999999999999999999999999999999887755556778999999999999999999999999999999
Q ss_pred hHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 016808 349 ATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 349 ~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
+++|+|||++.+.+++|++++++..|++++++|
T Consensus 346 ~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 378 (378)
T cd01157 346 PVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK 378 (378)
T ss_pred HHHHHHHHHhhceecCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999875
No 6
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=2.3e-63 Score=474.44 Aligned_cols=348 Identities=74% Similarity=1.185 Sum_probs=326.9
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+.+.++ +.|+.|++.||+++.+|++|||.|+++.+.+.++++|++.|+++++.+..|...+...+..+|+++|+++|
T Consensus 28 ~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 107 (376)
T cd01156 28 IDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKY 107 (376)
T ss_pred HHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHH
Confidence 35556788 99999999999999999999999999999999999999999999998877765666789999999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 191 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~ 191 (382)
++++.+|+.++++++|||.+|+|.....++++++++||+|||+|.|+||+..+|+++|+++++++++..++.+|+||++.
T Consensus 108 l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~ 187 (376)
T cd01156 108 LPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSAGAHGITAFIVEKGM 187 (376)
T ss_pred HHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEEEEEeCCCCCCCceEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998755444578899999999
Q ss_pred CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016808 192 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQ 271 (382)
Q Consensus 192 ~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~ 271 (382)
|||++.++|+++|++++++++|.|+||+||++++|+..+.|+......+...++.+++.++|+++++++.+++|+++|.+
T Consensus 188 ~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~ 267 (376)
T cd01156 188 PGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQ 267 (376)
T ss_pred CCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999889999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHH
Q 016808 272 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATG 351 (382)
Q Consensus 272 ~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~ 351 (382)
||+|+.++|.+|+++++|..++++++++++.+++.++.+.......+.+|+++++.+.++++.+++++||.||+++++++
T Consensus 268 ~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~ 347 (376)
T cd01156 268 FGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAAEKATQVALDAIQILGGNGYINDYPTG 347 (376)
T ss_pred cCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHH
Confidence 99999999999999999999999999999999999988765566788899999999999999999999999999999999
Q ss_pred HHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 352 RLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 352 r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
|+|||++.+.+++|++++++..|++.+.+
T Consensus 348 r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 348 RLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998764
No 7
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=2.7e-63 Score=474.94 Aligned_cols=344 Identities=35% Similarity=0.535 Sum_probs=321.3
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+++.+| +.|++|.+.||+++ +|++|||.|+++.+...+++++++.|+++++.+..|...+...+..+|+++|+++|
T Consensus 39 ~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 117 (386)
T cd01151 39 AYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKY 117 (386)
T ss_pred HHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHH
Confidence 34556688 99999999999999 99999999999999999999999999999888777765666778899999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 191 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~ 191 (382)
++++.+|+.++++++|||++|+|+....++|+++++||+|||+|.|+|++..|||++|+++++++ .++.+|+||++.
T Consensus 118 l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv~ar~~~~---~~~~~flVp~~~ 194 (386)
T cd01151 118 LPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARNDET---GKIRGFILERGM 194 (386)
T ss_pred HHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEEEEEECCC---CcEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998642 357899999999
Q ss_pred CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016808 192 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQ 271 (382)
Q Consensus 192 ~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~ 271 (382)
|||++.+.|+++||+++++++++|+||+||++++++. +.|+......+...|+.+++.++|+++++++.+++|+++|.+
T Consensus 195 ~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~ 273 (386)
T cd01151 195 KGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQ 273 (386)
T ss_pred CCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCee
Confidence 9999999999999999999999999999999999986 467777777788899999999999999999999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHH
Q 016808 272 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATG 351 (382)
Q Consensus 272 ~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~ 351 (382)
||+|+.++|.+|++|++|.+++++++++++.++..++.+.+...+.+++|.++++.+.++++.++|++||.||.+++|++
T Consensus 274 ~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~ 353 (386)
T cd01151 274 FGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEYHII 353 (386)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHH
Confidence 99999999999999999999999999999999999988765667889999999999999999999999999999999999
Q ss_pred HHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 016808 352 RLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 352 r~~rda~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
|+|||++...+++|++++++..+++.+++.
T Consensus 354 r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~ 383 (386)
T cd01151 354 RHMVNLESVNTYEGTHDIHALILGRAITGI 383 (386)
T ss_pred HHHHhhhcceecCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998863
No 8
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=4.5e-63 Score=471.80 Aligned_cols=347 Identities=35% Similarity=0.560 Sum_probs=325.7
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+.+.+| +.|+.|++.||+++.+|++|||.|.++.+.+.++++|+++|+++++.+..|. .+..++..+|+++|+++|
T Consensus 27 ~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~ 105 (375)
T cd01162 27 WDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRERF 105 (375)
T ss_pred HHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHH
Confidence 45567788 9999999999999999999999999999999999999999999998888776 677788899999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 191 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~ 191 (382)
++++.+|+.++++++|||++|+|...+.++++++++||+|||.|.|+|++..+|+++|+++++++ +..++.+|+||++.
T Consensus 106 l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v~a~~~~~-~~~~~~~~lv~~~~ 184 (375)
T cd01162 106 LPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTGGE-GPKGISCFVVEKGT 184 (375)
T ss_pred HHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEEEEEecCC-CCCceEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998653 33567899999999
Q ss_pred CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016808 192 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQ 271 (382)
Q Consensus 192 ~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~ 271 (382)
|||++.++|+++|+++++++++.||||+||++++++.++.|+......+...++.+++.++|+++++++.+++|+++|.+
T Consensus 185 ~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~ 264 (375)
T cd01162 185 PGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQ 264 (375)
T ss_pred CCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999889888778888899999999999999999999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchH
Q 016808 272 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 350 (382)
Q Consensus 272 ~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 350 (382)
||+|+.++|.+|+++++|.+++++++++++.+++.++++.+ ......++|+++++.+.++++.+++++||.||.+++++
T Consensus 265 fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 344 (375)
T cd01162 265 FGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYPV 344 (375)
T ss_pred cCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChH
Confidence 99999999999999999999999999999999999987643 34567889999999999999999999999999999999
Q ss_pred HHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 016808 351 GRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 351 ~r~~rda~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
+|+|||++..++++|++++++.++++.++++
T Consensus 345 ~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~~ 375 (375)
T cd01162 345 EQYVRDLRVHQILEGTNEIMRLIIARALLTR 375 (375)
T ss_pred HHHHHHhhcceeecCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999875
No 9
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=9.9e-63 Score=469.39 Aligned_cols=345 Identities=37% Similarity=0.672 Sum_probs=321.6
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+.+.+| +.|++|++.||+++.+|++|||.|+++.+.+.++|++++.+.+ ++.+.+|.+.+...+..+|+++|+++|
T Consensus 25 ~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~ 103 (372)
T cd01160 25 WEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGLSLHTDIVSPYITRAGSPEQKERV 103 (372)
T ss_pred HHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35567788 9999999999999999999999999999999999999996544 667777765667789999999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCC-CCCCCeEEEEEeCC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKG 190 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~-~~~~~~~~flVp~~ 190 (382)
++++.+|+.++++++|||++|+|.....++++++++||+|||+|.|+||+..||+++|.++++++ ++.+++.+|+||++
T Consensus 104 l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v~a~~~~~~~~~~~~~~~lv~~~ 183 (372)
T cd01160 104 LPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEARGAGGISLFLVERG 183 (372)
T ss_pred HHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999998654 23457889999999
Q ss_pred CCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016808 191 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQRE 270 (382)
Q Consensus 191 ~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~ 270 (382)
.|||++.++|+++||++++++++.|+||+||++++|+.++.|+......+...++.+++.++|+++++++.+++|+++|.
T Consensus 184 ~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~ 263 (372)
T cd01160 184 TPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRK 263 (372)
T ss_pred CCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999988999999999999999999999999999999998988888888899999999999999999999999999999
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchH
Q 016808 271 QFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 350 (382)
Q Consensus 271 ~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 350 (382)
+||+|+.++|.+|++|+++.+++++++++++.++...+.+......++++|+++++.+.++++.+++++||.||++++++
T Consensus 264 ~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l 343 (372)
T cd01160 264 AFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPI 343 (372)
T ss_pred ccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHH
Confidence 99999999999999999999999999999999999888776556788899999999999999999999999999999999
Q ss_pred HHHHHhhccCcccCChHHHHHHHHHHHH
Q 016808 351 GRLLRDAKLYEIGAGTSEIRRMIIGRAL 378 (382)
Q Consensus 351 ~r~~rda~~~~~~~g~~~~~~~~l~~~l 378 (382)
+|+|||++.+.+++|++++++..|++.+
T Consensus 344 ~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 344 ARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999875
No 10
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.2e-62 Score=469.37 Aligned_cols=345 Identities=29% Similarity=0.471 Sum_probs=319.6
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+.+.+| +.|+.|++.||+++.+|++|||.|+++.+.+.++++++++|+++++++..+. ....+..+++++|+++|
T Consensus 32 ~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~ 109 (380)
T PRK03354 32 CDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPG--GFNTFLREGTQEQIDKI 109 (380)
T ss_pred HHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhcc--cHHHHHHhCCHHHHHHH
Confidence 45667788 9999999999999999999999999999999999999999999887665543 24567888999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 191 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~ 191 (382)
++++.+|+.++++++|||+.|||.....|+++++++||+|||+|.|+|++.++||++|.++++++++...+.+|+||++.
T Consensus 110 l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~ 189 (380)
T PRK03354 110 MAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSK 189 (380)
T ss_pred HHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCCCCCCCceeEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999998544344567889999999
Q ss_pred CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016808 192 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQ 271 (382)
Q Consensus 192 ~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~ 271 (382)
|||++. +|+++||+++++++|.||||+||+++++|.++.|+......+...++.+++.++|+++++++.+++|+++|.+
T Consensus 190 ~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~ 268 (380)
T PRK03354 190 PGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQ 268 (380)
T ss_pred CceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999984 7999999999999999999999999999999888877667777889999999999999999999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHH
Q 016808 272 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATG 351 (382)
Q Consensus 272 ~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~ 351 (382)
||+|+.++|.+|++|++|..+++++++++++++..++.+.+......++|+++++.+.++++.+++++||.||.++++++
T Consensus 269 fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~ 348 (380)
T PRK03354 269 FGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRIS 348 (380)
T ss_pred cCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCChHH
Confidence 99999999999999999999999999999999999887765567889999999999999999999999999999999999
Q ss_pred HHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 352 RLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 352 r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
|+|||++...+++|++++++..+++.+++
T Consensus 349 r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (380)
T PRK03354 349 RFWRDLRVDRVSGGSDEMQILTLGRAVLK 377 (380)
T ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998875
No 11
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=9.9e-63 Score=468.95 Aligned_cols=342 Identities=32% Similarity=0.492 Sum_probs=318.0
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+.+.+| +.|+.+.+.||+++.+|++|||.|+++.+.+.++|++++.|+++++....+. .+...+..+|+++|+++|
T Consensus 27 ~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~ 105 (372)
T TIGR03207 27 RDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMSYVNLLAS-LNGQILAQHARPEIAKPW 105 (372)
T ss_pred HHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHHHHHHhhh-HHHHHHHHhCCHHHHHHH
Confidence 35566788 9999999999999999999999999999999999999999999988655444 666778889999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCC-CCCCCeEEEEEeCC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKG 190 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~-~~~~~~~~flVp~~ 190 (382)
++++.+|+.+.++++|||+.|||..++.++++++++||+|||+|.|+|++..+|+++|+++++++ .+..++.+|+||++
T Consensus 106 l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~ 185 (372)
T TIGR03207 106 LGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTGSEAEGARGISAFLVPMD 185 (372)
T ss_pred HHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEEEEEcCCCCCCCCceEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999998643 23456889999999
Q ss_pred CCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016808 191 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQRE 270 (382)
Q Consensus 191 ~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~ 270 (382)
.|||++ .+|+++|++++++++|.|+||+||++++++.++.|+......+...++.+++.++|+++++++.+++|+++|+
T Consensus 186 ~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~ 264 (372)
T TIGR03207 186 LPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQ 264 (372)
T ss_pred CCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999997 5799999999999999999999999999999988988888888999999999999999999999999999999
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchH
Q 016808 271 QFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 350 (382)
Q Consensus 271 ~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 350 (382)
+||+|+.++|.+|+++++|.+++++++++++.+++.++.+.+....++++|+++++.+.++++.++|++||.||+++ |+
T Consensus 265 ~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~-~l 343 (372)
T TIGR03207 265 AFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG-DM 343 (372)
T ss_pred ccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-hH
Confidence 99999999999999999999999999999999999988776556678899999999999999999999999999999 99
Q ss_pred HHHHHhhccCcccCChHHHHHHHHHHH
Q 016808 351 GRLLRDAKLYEIGAGTSEIRRMIIGRA 377 (382)
Q Consensus 351 ~r~~rda~~~~~~~g~~~~~~~~l~~~ 377 (382)
+|+|||++.+.+++|++++++..|++.
T Consensus 344 ~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 344 EQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred HHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 999999999999999999999999874
No 12
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2e-62 Score=468.10 Aligned_cols=344 Identities=31% Similarity=0.480 Sum_probs=318.6
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+.+.+| +.|+.|+++||+++.+|++|||.|.++.+.+.+++++++.|.+ ++.+ .+. .+...+..+|+++|+++|
T Consensus 32 ~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~-~~~-~~~~~l~~~g~~~q~~~~ 108 (381)
T PRK12341 32 CDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGAP-AFLI-TNG-QCIHSMRRFGSAEQLRKT 108 (381)
T ss_pred HHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcChh-HHHH-hhh-hhHHHHHHhCCHHHHHHH
Confidence 46677888 9999999999999999999999999999999999999999988 4443 232 455667889999999999
Q ss_pred hhhh-hcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCC-CCCCeEEEEEeC
Q 016808 112 LPKL-ISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA-GSKGITAFIIEK 189 (382)
Q Consensus 112 l~~l-~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~-~~~~~~~flVp~ 189 (382)
++++ .+|+.++++++|||++|||...+.++++++++||+|||+|.|+||+..||+++|.++++++. +..++.+|+||+
T Consensus 109 l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~ 188 (381)
T PRK12341 109 AESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQPKDPKKAFTLWWVDS 188 (381)
T ss_pred hHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEEcCCCCCCCCceEEEEEeC
Confidence 9998 49998899999999999999999999999999999999999999999999999999986542 334688999999
Q ss_pred CCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016808 190 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 269 (382)
Q Consensus 190 ~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r 269 (382)
+.|||++ .+|+++|++++++++++|+||+||++++||.++.|+......+...++.++++++|+++++++.+++|+++|
T Consensus 189 ~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R 267 (381)
T PRK12341 189 SKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQR 267 (381)
T ss_pred CCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998 679999999999999999999999999999999998877778888999999999999999999999999999
Q ss_pred hccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccch
Q 016808 270 EQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 349 (382)
Q Consensus 270 ~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 349 (382)
.+||+|+.++|.+|++|+++.+++++++++++.+++.++++.+....+.++|+++++.+.++++.+++++||.||.++++
T Consensus 268 ~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~ 347 (381)
T PRK12341 268 IQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEAR 347 (381)
T ss_pred hCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCH
Confidence 99999999999999999999999999999999999998887666677899999999999999999999999999999999
Q ss_pred HHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 350 TGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 350 l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
++|+|||++.+.+++|++++++..+++.+++
T Consensus 348 l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~ 378 (381)
T PRK12341 348 VSRFWRDVRCERIGGGTDEIMIYIAGRQILK 378 (381)
T ss_pred HHHHHHHhhcceecCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999886
No 13
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=2.9e-62 Score=466.54 Aligned_cols=348 Identities=46% Similarity=0.722 Sum_probs=328.3
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+.+.++ +.|+.|++.||+++++|++|||.|.++.+.+.++++++++|++++|++.+|...+...+..+++++|+++|
T Consensus 25 ~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 104 (373)
T cd01158 25 MDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKY 104 (373)
T ss_pred HhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHH
Confidence 45566788 99999999999999999999999999999999999999999999999988875666788999999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 191 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~ 191 (382)
++++.+|+.++++++|||.+|++...+.++++++++||+|||+|.|+||+..+||++|.++++++++.+++.+|+||++.
T Consensus 105 l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv~a~~~~~~~~~~~~~~lvp~~~ 184 (373)
T cd01158 105 LPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSKGYRGITAFIVERDT 184 (373)
T ss_pred HHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCCCCCCCceEEEEEcCCC
Confidence 99999999999999999999999988999999999999999999999999999999999987654445578899999999
Q ss_pred CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016808 192 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQ 271 (382)
Q Consensus 192 ~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~ 271 (382)
|||++.++|+.+||+++++++|.|+||+||++++++.++.|+......+...++.+++.++|+++++++.+++|+++|.+
T Consensus 185 ~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~ 264 (373)
T cd01158 185 PGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQ 264 (373)
T ss_pred CCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999989888888888899999999999999999999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHH
Q 016808 272 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATG 351 (382)
Q Consensus 272 ~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~ 351 (382)
||.|+.++|.+|++++++.+.+++++++++.++..++.+.+....+.++|+++++.+.++++.+++++|+.||.++++++
T Consensus 265 ~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~l~ 344 (373)
T cd01158 265 FGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVE 344 (373)
T ss_pred cCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCChHH
Confidence 99999999999999999999999999999999999987765667788999999999999999999999999999999999
Q ss_pred HHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 352 RLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 352 r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
|+|||++.+.+++|++++++..++++++|
T Consensus 345 r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 345 RYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999986
No 14
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-62 Score=471.13 Aligned_cols=344 Identities=41% Similarity=0.712 Sum_probs=321.1
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+...+| +.|+.|++.||+++.+|++|||.|+++.+.+.++|++++.|+++++.+..|..++...+..+|+++|+++|
T Consensus 63 ~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~ 142 (410)
T PTZ00461 63 DDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARW 142 (410)
T ss_pred HhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHH
Confidence 45566788 99999999999999999999999999999999999999999988877776654556677889999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCC-eEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKG 190 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~-g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~ 190 (382)
++++.+|+.++++++|||++|+|.....|+++++++ ||+|||+|.|+||+..|||++|.+++++ ++.+|+||++
T Consensus 143 l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv~a~~~~-----~~~~flVp~~ 217 (410)
T PTZ00461 143 LPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAKVDG-----KITAFVVERG 217 (410)
T ss_pred HHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEEEEEeCC-----ceEEEEEeCC
Confidence 999999999999999999999999999999999865 6999999999999999999999999753 4789999999
Q ss_pred CCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016808 191 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQRE 270 (382)
Q Consensus 191 ~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~ 270 (382)
.|||++.++|+++|+++++++++.|+||+||++++|+.++.|+......+...++.+++.++|+++++++.+++|+++|.
T Consensus 218 ~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~ 297 (410)
T PTZ00461 218 TKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERK 297 (410)
T ss_pred CCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 99999999999999999999999999999999999999998988777888899999999999999999999999999999
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchH
Q 016808 271 QFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 350 (382)
Q Consensus 271 ~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 350 (382)
+||+|+.++|.+|++|+++..++++++++++.++..++.+.+....+.++|.++++.+.++++.++|++||.||+.++++
T Consensus 298 ~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~~~l 377 (410)
T PTZ00461 298 AFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFATPIAKKVADSAIQVMGGMGYSRDMPV 377 (410)
T ss_pred ecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHH
Confidence 99999999999999999999999999999999999887765556677889999999999999999999999999999999
Q ss_pred HHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 016808 351 GRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 351 ~r~~rda~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
+|+|||++.+.+.+|++++++..|++.++++
T Consensus 378 ~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 378 ERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred HHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998764
No 15
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=7.7e-62 Score=467.87 Aligned_cols=347 Identities=35% Similarity=0.582 Sum_probs=321.8
Q ss_pred cccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhh
Q 016808 34 DTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYL 112 (382)
Q Consensus 34 d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l 112 (382)
|+.+.++ +.|+.|++.||+++.+|++|||.|+++.+.+.++|++++ |+++++.+..|...+...+..+|+++|+++|+
T Consensus 52 d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l 130 (409)
T cd01161 52 DQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYL 130 (409)
T ss_pred ccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHh
Confidence 4456688 999999999999999999999999999999999999999 99999888877645555678899999999999
Q ss_pred hhhhcCCceeEEEecCCCCCCCcCCceeEEEEe--CCeEEEEeEEEeecCCCCCcEEEEEEEeCC--CCC--CCCeEEEE
Q 016808 113 PKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKMWCTNGPVAQTLVVYAKTDI--KAG--SKGITAFI 186 (382)
Q Consensus 113 ~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~--~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~--~~~--~~~~~~fl 186 (382)
+++.+|+.++++++|||++|+|...+.++++++ ++||+|||+|.|+||+..|||++|.+++++ .++ ..++.+|+
T Consensus 131 ~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~fl 210 (409)
T cd01161 131 PKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFI 210 (409)
T ss_pred HHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEE
Confidence 999999999999999999999999999999984 457999999999999999999999999762 112 24688999
Q ss_pred EeCCCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016808 187 IEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYV 266 (382)
Q Consensus 187 Vp~~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~ 266 (382)
||++.|||++.++|+++|++++++++++|+||+||+++++|.+++|+......+...++.+++.++|+++++++.+++|+
T Consensus 211 vp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a 290 (409)
T cd01161 211 VERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYA 290 (409)
T ss_pred EeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred hhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CChhhhhHHHHHHHHHHHHHHHHHHHhhcCcee
Q 016808 267 RQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGY 344 (382)
Q Consensus 267 ~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~ 344 (382)
++|.+||+|+.++|.+|++++++.+++++++++++.+++.++.+. +....++++|+++++.+.++++.+++++||.||
T Consensus 291 ~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~ 370 (409)
T cd01161 291 NNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGF 370 (409)
T ss_pred HhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999999998765 245678999999999999999999999999999
Q ss_pred cccchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 016808 345 VNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 345 ~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
.++++++|+|||++...+++|++++++.++++.++++
T Consensus 371 ~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 371 MREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred cCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999875
No 16
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1e-61 Score=461.27 Aligned_cols=339 Identities=25% Similarity=0.376 Sum_probs=308.3
Q ss_pred cccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhh
Q 016808 34 DTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYL 112 (382)
Q Consensus 34 d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l 112 (382)
|+.+.+| +.|+.+.+.||+++.+|++|||.|+++.+.+.++|++++.+.+... +. +...+..++..+|+++|+++|+
T Consensus 33 d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~~~~~-~~-~~~~~~~~l~~~g~~~qk~~~L 110 (378)
T TIGR03203 33 KEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKALVLEPY-LA-TVVIGGGFLRHAGSAAQKAAHL 110 (378)
T ss_pred hccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcccchHH-HH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 4556788 9999999999999999999999999999999999999997755432 22 2224556788999999999999
Q ss_pred hhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCC-CCCCCeEEEEEeCCC
Q 016808 113 PKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKGM 191 (382)
Q Consensus 113 ~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~-~~~~~~~~flVp~~~ 191 (382)
+++.+|+.++++++|||+.|||...+.|++++++|||+|||+|.|||++..||+++|.++++++ ++.+++++|+||++.
T Consensus 111 ~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~ 190 (378)
T TIGR03203 111 PGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTARTKGARRDRTGIGVFLVPAGA 190 (378)
T ss_pred HHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEEecCCCCCCCCceEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999999999999998643 244678999999999
Q ss_pred CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016808 192 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQ 271 (382)
Q Consensus 192 ~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~ 271 (382)
|||++.+.+.+.|+ .++++.||||+||+++++|.++.|+..+...+...|+.+++.++|+++++++.+++|+++|.+
T Consensus 191 ~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~q 267 (378)
T TIGR03203 191 KGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQ 267 (378)
T ss_pred CCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCee
Confidence 99999666665554 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccch
Q 016808 272 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 349 (382)
Q Consensus 272 ~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 349 (382)
||+||.++|.||++|++|.+++++++++++.++...+.+. +....++++|+++++.+.++++.++|+|||.||+++++
T Consensus 268 FG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~ 347 (378)
T TIGR03203 268 FGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAK 347 (378)
T ss_pred cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecccch
Confidence 9999999999999999999999999999999998877532 34577899999999999999999999999999999999
Q ss_pred HHHHHHhhccCcccCChHHHHHHHHHHH
Q 016808 350 TGRLLRDAKLYEIGAGTSEIRRMIIGRA 377 (382)
Q Consensus 350 l~r~~rda~~~~~~~g~~~~~~~~l~~~ 377 (382)
++++|||++...+.+|++++++..+++.
T Consensus 348 ~~~~~r~a~~~~~~~G~~~~~~~~~~~~ 375 (378)
T TIGR03203 348 IGHYFKRLTMIEHTFGDTDFHLSRVSAA 375 (378)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 9999999999999999999999999883
No 17
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.4e-61 Score=463.01 Aligned_cols=342 Identities=28% Similarity=0.471 Sum_probs=317.6
Q ss_pred cccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhh
Q 016808 34 DTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYL 112 (382)
Q Consensus 34 d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l 112 (382)
++...+| +.|++|.+.||+++.+ ++|||.|+++.+.+.++|++++.|++++..+..|...+...+..+|+++|+++|+
T Consensus 56 ~~~~~~p~~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l 134 (412)
T PLN02526 56 WEKAEFPFHIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYL 134 (412)
T ss_pred HHhCCCCHHHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHH
Confidence 3345688 9999999999999999 9999999999999999999999999987766666645666799999999999999
Q ss_pred hhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCCC
Q 016808 113 PKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP 192 (382)
Q Consensus 113 ~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~~ 192 (382)
+++.+|+.++++++|||+.|+|...+.+++++++|||+|||+|.|+||+..|||++|.++++++ .++.+|+||.+.|
T Consensus 135 ~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~---~~~~~flV~~~~~ 211 (412)
T PLN02526 135 PSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTT---NQINGFIVKKGAP 211 (412)
T ss_pred HHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCC---CCeEEEEEcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998642 3578999999999
Q ss_pred CeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016808 193 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 272 (382)
Q Consensus 193 gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~ 272 (382)
||++.++|+++|++++++++|+|+||+||++++++..+ ++......+...++.+++.++|+++++++.+++|+++|.+|
T Consensus 212 Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~f 290 (412)
T PLN02526 212 GLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 290 (412)
T ss_pred CeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeC
Confidence 99999999999999999999999999999999997653 56666778889999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHHH
Q 016808 273 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGR 352 (382)
Q Consensus 273 g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r 352 (382)
|+|+.++|.+|+++++|.+++++++++++++++.+|.+.+....++++|+++++.+.++++.+++++||.||+++++++|
T Consensus 291 g~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r 370 (412)
T PLN02526 291 GAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGRELLGGNGILADFLVAK 370 (412)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHH
Confidence 99999999999999999999999999999999998876555677889999999999999999999999999999999999
Q ss_pred HHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 353 LLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 353 ~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
+|||++...+++|++++++..+++.+++
T Consensus 371 ~~RD~~~~~~~~G~~ev~~~~i~~~~l~ 398 (412)
T PLN02526 371 AFCDLEPIYTYEGTYDINALVTGREITG 398 (412)
T ss_pred HHhcccceEecCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999976
No 18
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.6e-60 Score=455.26 Aligned_cols=343 Identities=24% Similarity=0.335 Sum_probs=309.1
Q ss_pred CcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccC-chhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhh
Q 016808 38 QDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG-SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKL 115 (382)
Q Consensus 38 ~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~-~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l 115 (382)
.++ ++|+.+.++||+++.+|++|||.|+++.+.+.++|++++++. +..+....+...+...+..+|+++|+++|++++
T Consensus 41 ~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l 120 (394)
T cd01155 41 PIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPL 120 (394)
T ss_pred hhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHH
Confidence 355 889999999999999999999999999999999999999863 333222222223446789999999999999999
Q ss_pred hcCCceeEEEecCCC-CCCCcCCceeEEEEeCCeEEEEeEEEeecCCCC--CcEEEEEEEeCCC--CCCCCeEEEEEeCC
Q 016808 116 ISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV--AQTLVVYAKTDIK--AGSKGITAFIIEKG 190 (382)
Q Consensus 116 ~~g~~~~~~~~te~~-~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~--a~~~lv~a~~~~~--~~~~~~~~flVp~~ 190 (382)
.+|+.++++++|||+ .|+|...+.++++++++||+|||+|.|+||+.+ +|+++|.++++++ ++..++.+|+||++
T Consensus 121 ~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~ 200 (394)
T cd01155 121 LDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMD 200 (394)
T ss_pred hCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCC
Confidence 999999999999997 579988899999999999999999999999955 7899999987643 22356899999999
Q ss_pred CCCeeeccccccccCCC--CCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016808 191 MPGFSTAQKLDKLGMRG--SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQ 268 (382)
Q Consensus 191 ~~gv~~~~~~~~~G~~~--~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~ 268 (382)
.|||++.++|+++|+++ +++++|.|+||+||++++++.++.|+......+...|+..++.++|+++++++.+++|+++
T Consensus 201 ~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~ 280 (394)
T cd01155 201 TPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVS 280 (394)
T ss_pred CCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988999999997 6789999999999999999999889888888888899999999999999999999999999
Q ss_pred hhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecc
Q 016808 269 REQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVN 346 (382)
Q Consensus 269 r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~ 346 (382)
|.+||+|+.++|.+|++|++|.+++++++++++.+++.++... +.....+++|+++++.+.++++.+++++||.||++
T Consensus 281 R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 360 (394)
T cd01155 281 REAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGNKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQ 360 (394)
T ss_pred CccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecC
Confidence 9999999999999999999999999999999999999988743 24577899999999999999999999999999999
Q ss_pred cchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 347 EYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 347 ~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
+++++|+|||++.+.+++|++++++..+++.+++
T Consensus 361 ~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 361 DTPLANMYAWARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred CCHHHHHHHHHhhceeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998754
No 19
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.6e-59 Score=467.71 Aligned_cols=339 Identities=23% Similarity=0.333 Sum_probs=309.6
Q ss_pred ccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHH-HHHHHhcCCHHHHHhhh
Q 016808 35 TQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYL 112 (382)
Q Consensus 35 ~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~-~~~l~~~g~~~~~~~~l 112 (382)
+.+.+| +.|+.+++.||+++.+|++|||.|++..+.+.++|++++.|++++..+..|+.+. ..++..+|+++||++|+
T Consensus 106 ~~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yL 185 (777)
T PRK09463 106 ELADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYL 185 (777)
T ss_pred cccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 346788 9999999999999999999999999999999999999999988877666665444 35788999999999999
Q ss_pred hhhhcCCceeEEEecCCCCCCCcCCceeE-----EEEeCC---eEEEEeEEEeecCCCCCcEEEEEEEeCCC------CC
Q 016808 113 PKLISGEHVGALAMSEPNAGSDVVGMKCK-----ADRVDG---GYIINGNKMWCTNGPVAQTLVVYAKTDIK------AG 178 (382)
Q Consensus 113 ~~l~~g~~~~~~~~te~~~gsd~~~~~~~-----a~~~~~---g~~l~G~k~~vs~~~~a~~~lv~a~~~~~------~~ 178 (382)
|++++|+.++|+++|||+.|||.....++ ++++++ ||+|||+|.|||+++.||+++|.+++.++ .+
T Consensus 186 p~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~ 265 (777)
T PRK09463 186 PRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKE 265 (777)
T ss_pred HHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCC
Confidence 99999999999999999999999887654 445565 69999999999999999999999986322 23
Q ss_pred CCCeEEEEEeCCCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCC---CchHHHHHhhhhHHH-HHHHHHHHHH
Q 016808 179 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE---GKGVYVMMSGLDLER-LVLAAGPLGI 254 (382)
Q Consensus 179 ~~~~~~flVp~~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~---~~g~~~~~~~~~~~~-~~~~a~~~G~ 254 (382)
..++++|+||++.|||++.+.++++|++ ..+++++|+||+||.+++||.. +.|+..++..+..+| +.+++.++|+
T Consensus 266 ~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ 344 (777)
T PRK09463 266 DLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGG 344 (777)
T ss_pred CCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999998 5689999999999999999974 889999999999999 8999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHH
Q 016808 255 MQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQ 334 (382)
Q Consensus 255 ~~~al~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~ 334 (382)
++++++.+++|+++|.|||+||+++|.||++|++|..++++++++.+.++..+|.+.....+++++|+++++.+.++++.
T Consensus 345 ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~~~~aA~AK~~atE~a~~va~~ 424 (777)
T PRK09463 345 AKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEKPSVLSAIAKYHLTERGRQVIND 424 (777)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889887766778999999999999999999
Q ss_pred HHHhhcCceeccc--chHHHHHHhhccCcccCChHHHHHHHH
Q 016808 335 AIQCLGGNGYVNE--YATGRLLRDAKLYEIGAGTSEIRRMII 374 (382)
Q Consensus 335 ~~~~~Gg~g~~~~--~~l~r~~rda~~~~~~~g~~~~~~~~l 374 (382)
++|++||.||+.+ ++++|+|||++...+.+|++++++..+
T Consensus 425 AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 425 AMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 9999999999997 899999999999999999999999875
No 20
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-58 Score=461.35 Aligned_cols=336 Identities=23% Similarity=0.293 Sum_probs=302.0
Q ss_pred cccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHH-HHHHHhcCCHHHHHhh
Q 016808 34 DTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKY 111 (382)
Q Consensus 34 d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~-~~~l~~~g~~~~~~~~ 111 (382)
++.+.+| +.|+.+++.||+++.+|++|||.|++..+.+.+++++++.+.+++..+..|+.+. ..++..+|+++|+++|
T Consensus 104 ~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~y 183 (774)
T PRK13026 104 QNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYW 183 (774)
T ss_pred hhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhh
Confidence 3456788 9999999999999999999999999999999999999999988876666665343 4578899999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEE-----EeCC---eEEEEeEEEeecCCCCCcEEEEEEEeC-CC-----C
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKAD-----RVDG---GYIINGNKMWCTNGPVAQTLVVYAKTD-IK-----A 177 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~-----~~~~---g~~l~G~k~~vs~~~~a~~~lv~a~~~-~~-----~ 177 (382)
+|++++|+.++|+++|||++|||.....++++ ++++ ||+|||+|.|||+++.||+++|.++.. ++ +
T Consensus 184 LP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~ 263 (774)
T PRK13026 184 LPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDK 263 (774)
T ss_pred hHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCC
Confidence 99999999999999999999999988876554 4666 699999999999999999998887643 22 2
Q ss_pred CCCCeEEEEEeCCCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCC---CchHHHHHhhhhHHH-HHHHHHHHH
Q 016808 178 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE---GKGVYVMMSGLDLER-LVLAAGPLG 253 (382)
Q Consensus 178 ~~~~~~~flVp~~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~---~~g~~~~~~~~~~~~-~~~~a~~~G 253 (382)
+..++++|+||.+.|||++.+.++++|++.. +++++||||+||.+++||.+ +.|+..++..+..+| +.+++.++|
T Consensus 264 ~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G 342 (774)
T PRK13026 264 KELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTA 342 (774)
T ss_pred CCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999889999999874 58999999999999999975 889999999999999 899999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHH
Q 016808 254 IMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYT---ALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQ 330 (382)
Q Consensus 254 ~~~~al~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~ 330 (382)
+++.+++.+++|+++|.|||+||+++|.||++|++|.. .+++++.+++.++ |.+.....+++++|+++++.+.+
T Consensus 343 ~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~---D~G~~~~~~aA~AK~~atE~a~~ 419 (774)
T PRK13026 343 SGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGL---DLGVKPSVVTAIAKYHMTELARD 419 (774)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 6888888887754 55555568889999999999999
Q ss_pred HHHHHHHhhcCceeccc--chHHHHHHhhccCcccCChHHHHHHH
Q 016808 331 VTLQAIQCLGGNGYVNE--YATGRLLRDAKLYEIGAGTSEIRRMI 373 (382)
Q Consensus 331 ~~~~~~~~~Gg~g~~~~--~~l~r~~rda~~~~~~~g~~~~~~~~ 373 (382)
+++.++|++||.||+++ ++++|+|||++...+.+|++++++..
T Consensus 420 va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l 464 (774)
T PRK13026 420 VVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNL 464 (774)
T ss_pred HHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHH
Confidence 99999999999999998 89999999999999999999999984
No 21
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.3e-57 Score=436.27 Aligned_cols=332 Identities=29% Similarity=0.445 Sum_probs=301.1
Q ss_pred HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCCc
Q 016808 41 NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 120 (382)
Q Consensus 41 ~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~ 120 (382)
+.|++|+++||+++.+|++|||.|.++.+...++|+++++|+++++.+..| .+...+..+|+++|+++|++++.+|+.
T Consensus 40 e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~~ 117 (407)
T cd01153 40 EALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGEW 117 (407)
T ss_pred HHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCCe
Confidence 469999999999999999999999999999999999999999999876655 344667888999999999999999999
Q ss_pred eeEEEecCCCCCCCcCCceeEEEEe-CCeEEEEeEEEeecCCCCC----cEEEEEEEeCCC-CCCCCeEEEEEeCCC---
Q 016808 121 VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM--- 191 (382)
Q Consensus 121 ~~~~~~te~~~gsd~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~a----~~~lv~a~~~~~-~~~~~~~~flVp~~~--- 191 (382)
+.++++|||++|||...+.|+++++ +|||+|||+|.|+||+.++ ++++|.++++++ ++..++.+|+||++.
T Consensus 118 ~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~ 197 (407)
T cd01153 118 TGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDG 197 (407)
T ss_pred eEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCC
Confidence 9999999999999999999999998 5679999999999999887 577888987542 234568899999987
Q ss_pred --CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016808 192 --PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 269 (382)
Q Consensus 192 --~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r 269 (382)
|||++.++|+++|++++++++++|+||+|| +|+.++.|+......+...|+.++++++|+++++++.+++|+++|
T Consensus 198 ~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R 274 (407)
T cd01153 198 ERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKER 274 (407)
T ss_pred CCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999 889888899888888999999999999999999999999999999
Q ss_pred hccCCC--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------------hhhhhHHHHHHHHH
Q 016808 270 EQFGRP--------LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD--------------PKDCAGVILCAAER 327 (382)
Q Consensus 270 ~~~g~~--------i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~ak~~~~~~ 327 (382)
.+||+| +.++|.+|++|++|.+++++++++++.+++.++..... ....+++|+++++.
T Consensus 275 ~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~ 354 (407)
T cd01153 275 KQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEA 354 (407)
T ss_pred eecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999 78899999999999999999999999999988765311 23356899999999
Q ss_pred HHHHHHHHHHhhcCceecccchHHHHHHhhccCcccCChHHHHHH-HHHHH
Q 016808 328 ATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM-IIGRA 377 (382)
Q Consensus 328 a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~-~l~~~ 377 (382)
+.++++.+++++||.||.++++++|+|||++++.+++|++++++. .+++.
T Consensus 355 a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~~ 405 (407)
T cd01153 355 ALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGRK 405 (407)
T ss_pred HHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999998877 55554
No 22
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=2e-57 Score=435.84 Aligned_cols=347 Identities=42% Similarity=0.683 Sum_probs=320.1
Q ss_pred ccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhH---HHHHHHhcCCHHHHHh
Q 016808 35 TQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL---CINQLVRHGSPAQKDK 110 (382)
Q Consensus 35 ~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~---~~~~l~~~g~~~~~~~ 110 (382)
....+| +.++.+.+.|++++.+|++|||.+.++.+...+++++++.+++.++.+..+... ....+..+|+++|+++
T Consensus 36 ~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~ 115 (393)
T COG1960 36 EDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRR 115 (393)
T ss_pred ccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHH
Confidence 367888 999999999999999999999999999999999999999999887766655422 2235667999999999
Q ss_pred hhhhhhcCCceeEEEecCCCCCCCcCCce-eEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCC-CCCCCeEEEEEe
Q 016808 111 YLPKLISGEHVGALAMSEPNAGSDVVGMK-CKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIE 188 (382)
Q Consensus 111 ~l~~l~~g~~~~~~~~te~~~gsd~~~~~-~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~-~~~~~~~~flVp 188 (382)
|++++.+|+.++|+++|||.+|||..... |+++..+++|+|||+|.|+||+..+|+++|+++++++ ++.+++++|+||
T Consensus 116 ~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~ 195 (393)
T COG1960 116 YLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPAPGKHKGISLFLVP 195 (393)
T ss_pred hchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCCEEEEEEEcCCcccccCceEEEEEe
Confidence 99999999999999999999999999877 6777766669999999999999999999999999865 466789999999
Q ss_pred CC-CCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016808 189 KG-MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVR 267 (382)
Q Consensus 189 ~~-~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~ 267 (382)
++ .|||++.+.|+..|+++++++++.|+||+||.+++||..+.|+......+...|+..++.++|+++++++.+++|++
T Consensus 196 ~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~ 275 (393)
T COG1960 196 KDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYAR 275 (393)
T ss_pred CCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 59999977776449999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceeccc
Q 016808 268 QREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE 347 (382)
Q Consensus 268 ~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~ 347 (382)
+|++||+|+.++|.+|++|+++.++++++++++++++...+...+....+.++|.++++.+.++++.++|++||.||+.+
T Consensus 276 ~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e 355 (393)
T COG1960 276 ERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAGAEAAMAKLFATEAALEVADEAVQVHGGYGYTEE 355 (393)
T ss_pred HhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 99999999999999999999999999999999999999988875445789999999999999999999999999999999
Q ss_pred chHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 016808 348 YATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 348 ~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
++++|+|||++...+++|++++++..+++.++++
T Consensus 356 ~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~ 389 (393)
T COG1960 356 YPVERYYRDARILRIYEGTSEIQRLIIARRLLGL 389 (393)
T ss_pred chHHHHHHHhHhheeccCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999874
No 23
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=7.2e-57 Score=430.72 Aligned_cols=335 Identities=25% Similarity=0.353 Sum_probs=298.1
Q ss_pred HHHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCC
Q 016808 40 VNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 119 (382)
Q Consensus 40 ~~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~ 119 (382)
+++|+++.+.||+++.+|++|||.|+++.+.+.++|++++++.+.++....+ .+...+..+|+++|+++|++++.+|+
T Consensus 43 ~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~ 120 (395)
T TIGR03204 43 VTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVD 120 (395)
T ss_pred HHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCc
Confidence 3899999999999999999999999999999999999999998887643332 44457888899999999999999999
Q ss_pred ceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeeecc
Q 016808 120 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQ 198 (382)
Q Consensus 120 ~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~-~~~~~~~flVp~~~~gv~~~~ 198 (382)
.++++++|||++|||.....|+++++++||+|||+|.|||++..||+++|.+++++++ +.+++.+|+||.+.|||++.+
T Consensus 121 ~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~ 200 (395)
T TIGR03204 121 DWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRP 200 (395)
T ss_pred hheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecC
Confidence 9999999999999999999999999999999999999999999999999999975432 345689999999999999965
Q ss_pred ccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc
Q 016808 199 KLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGE 278 (382)
Q Consensus 199 ~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~i~~ 278 (382)
.....| ++++++|.|+||+||+++++|..+.|+......+...++..++ +|+++++++.+++|+++|++||+||.+
T Consensus 201 ~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~ 276 (395)
T TIGR03204 201 IQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIE 276 (395)
T ss_pred hhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCcccc
Confidence 444433 7789999999999999999999899998888888888888876 899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-CChhhhhHHHHHHHHHHHHHHHHHHHh----------hcCceecc
Q 016808 279 FQFIQGKTADMYTALQSSRSYVYSVARDCD-NGK-VDPKDCAGVILCAAERATQVTLQAIQC----------LGGNGYVN 346 (382)
Q Consensus 279 ~~~v~~~la~~~~~~~~~~~~~~~~a~~~~-~~~-~~~~~~~~ak~~~~~~a~~~~~~~~~~----------~Gg~g~~~ 346 (382)
+|.+|++|++|.++++++|+++|+++.... .+. .....++++|+++++.+.++++.++|+ |||.||++
T Consensus 277 ~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~ 356 (395)
T TIGR03204 277 DAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNE 356 (395)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 999999999999999999999999975432 221 234679999999999999999999985 78889986
Q ss_pred c----chHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 347 E----YATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 347 ~----~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
+ ++++++|||++.+.+++|++++++..|++.+++
T Consensus 357 ~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 357 AMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred cchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcC
Confidence 6 469999999999999999999999999998864
No 24
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=3.3e-57 Score=432.00 Aligned_cols=340 Identities=24% Similarity=0.371 Sum_probs=304.5
Q ss_pred cccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhh
Q 016808 34 DTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYL 112 (382)
Q Consensus 34 d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l 112 (382)
++++.+| ++++.|+++||+++.+|++|||.|.++.+.+.+++++++.|.++++.+..+. .....+..+|+++|+++|+
T Consensus 31 ~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l 109 (380)
T cd01152 31 REGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGID-LAGPTILAYGTDEQKRRFL 109 (380)
T ss_pred cccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCcccchhhHH-HHHHHHHHhCCHHHHHHHh
Confidence 4456788 8889999999999999999999999999999999999999999987633333 4556788999999999999
Q ss_pred hhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCC-CCCCCeEEEEEeCCC
Q 016808 113 PKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKGM 191 (382)
Q Consensus 113 ~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~-~~~~~~~~flVp~~~ 191 (382)
+++.+|+.++++++|||++|+|...+.++++++++||+|||.|.|+|++.++|+++|+++++++ ++..++.+|+||++.
T Consensus 110 ~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~ 189 (380)
T cd01152 110 PPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDPEAPKHRGISILLVDMDS 189 (380)
T ss_pred HHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEEEEEEEeCCCccCcCCeEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999997643 233468899999999
Q ss_pred CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016808 192 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQ 271 (382)
Q Consensus 192 ~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~ 271 (382)
|||++.+.|+++| +++++++.|+||+||.+++|+.++.|+......+...|+..++.+. .+++.+++|+++|.+
T Consensus 190 ~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~~~~~~----~~~~~a~~~a~~r~~ 263 (380)
T cd01152 190 PGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFERVSIGGSAA----TFFELLLARLLLLTR 263 (380)
T ss_pred CceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcccccchhhh----HHHHHHHHHHHHHHh
Confidence 9999988898887 6788999999999999999999988888777777777766655444 445566778888899
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceeccc----
Q 016808 272 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE---- 347 (382)
Q Consensus 272 ~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~---- 347 (382)
||+|+.++|.+|++|++|.+++++++++++.+++.++++.+....++++|+++++.+.++++.+++++||.||.++
T Consensus 264 ~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~ 343 (380)
T cd01152 264 DGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSELAQELAELALELLGTAALLRDPAPG 343 (380)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 9999999999999999999999999999999999998776556778999999999999999999999999999988
Q ss_pred ----chHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 348 ----YATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 348 ----~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
++++|+|||++.+.+++|++++++..+++.+++
T Consensus 344 ~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 344 AELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred cccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999998874
No 25
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=5.7e-58 Score=425.97 Aligned_cols=348 Identities=34% Similarity=0.559 Sum_probs=328.8
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|..+..+ +.++.|+++|+|++.||++|||.|+++...+++.|.++.+|.+++..+..|.......|..||+++|+++|
T Consensus 104 ~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kY 183 (634)
T KOG0137|consen 104 NDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKY 183 (634)
T ss_pred hhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHH
Confidence 45566667 99999999999999999999999999999999999999999999998888887888999999999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCe--EEEEeEEEeecCCCCCcEEEEEEEeCCC----CCCCCeEEE
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIK----AGSKGITAF 185 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g--~~l~G~k~~vs~~~~a~~~lv~a~~~~~----~~~~~~~~f 185 (382)
+|++++|+.+++|++|||.+|||.....++|+...|| |+|||.|.|++|+..||+++|+|++..+ ...+++++|
T Consensus 184 L~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~F 263 (634)
T KOG0137|consen 184 LPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAF 263 (634)
T ss_pred HHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEE
Confidence 9999999999999999999999999999999887654 9999999999999999999999999732 235678999
Q ss_pred EEeCCCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016808 186 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPY 265 (382)
Q Consensus 186 lVp~~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~ 265 (382)
+|+++..||+-.++..++|.+++.++.|.|+++.||.+++||.+++|+...+.++..+|+..++..+|.++++++++.+|
T Consensus 264 lver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~ 343 (634)
T KOG0137|consen 264 LVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADY 343 (634)
T ss_pred EEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChhhhhHHHHHHHHHHHHHHHHHHHhhcCce
Q 016808 266 VRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG--KVDPKDCAGVILCAAERATQVTLQAIQCLGGNG 343 (382)
Q Consensus 266 ~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g 343 (382)
+..|.|||.++.++..+|.++++|...++++++|+|..+..+|+. .+...++++.|+++++.+..++++++|++||.|
T Consensus 344 ~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g 423 (634)
T KOG0137|consen 344 ATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMG 423 (634)
T ss_pred hhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHHHHHHhhhheecccc
Confidence 999999999999999999999999999999999999999999984 456889999999999999999999999999999
Q ss_pred ecccchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 344 YVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 344 ~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
|+++.+++|.+||++.+.|++|++++++..++..-++
T Consensus 424 ~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~q 460 (634)
T KOG0137|consen 424 YMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGLQ 460 (634)
T ss_pred ccccCchHHHhhhhheeeeecCchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999988876544
No 26
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.1e-56 Score=439.08 Aligned_cols=336 Identities=25% Similarity=0.392 Sum_probs=299.7
Q ss_pred HHHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCC
Q 016808 40 VNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 119 (382)
Q Consensus 40 ~~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~ 119 (382)
.+.|+.+.+.||+++.+|++|||.|++......+.|.++..+++++.....+. .+...|..+|+++||++|+|++.+|+
T Consensus 102 ~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe 180 (622)
T PTZ00456 102 KEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGE 180 (622)
T ss_pred HHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 38899999999999999999999999987555556667777777654433333 55678999999999999999999999
Q ss_pred ceeEEEecCCCCCCCcCCceeEEEEeCCe-EEEEeEEEeecCCCCC----cEEEEEEEeCCC-CCCCCeEEEEEeCCC--
Q 016808 120 HVGALAMSEPNAGSDVVGMKCKADRVDGG-YIINGNKMWCTNGPVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM-- 191 (382)
Q Consensus 120 ~~~~~~~te~~~gsd~~~~~~~a~~~~~g-~~l~G~k~~vs~~~~a----~~~lv~a~~~~~-~~~~~~~~flVp~~~-- 191 (382)
+++++++|||++|||+..+.|+|++++|| |+|||+|.|||++.++ ++++|+|++++. ++.+++++|+||++.
T Consensus 181 ~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~ 260 (622)
T PTZ00456 181 WSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVK 260 (622)
T ss_pred hhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCC
Confidence 99999999999999999999999999875 9999999999999873 688999998753 456789999999864
Q ss_pred --------CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016808 192 --------PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVL 263 (382)
Q Consensus 192 --------~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~ 263 (382)
+||++...++++|+++++++++.|||+ .+++||.++.|+..+...+...|+.+++.++|+++++++.++
T Consensus 261 ~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~~---~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al 337 (622)
T PTZ00456 261 PDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFENS---VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNAL 337 (622)
T ss_pred cCCCccCCCCeeecCcccccCCCCCceEEEEeeCh---hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478887888999999999999999994 688999999999999999999999999999999999999999
Q ss_pred HHhhhhhcc------------CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---C----------Chhhhh
Q 016808 264 PYVRQREQF------------GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK---V----------DPKDCA 318 (382)
Q Consensus 264 ~~~~~r~~~------------g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~---~----------~~~~~~ 318 (382)
+|+++|.|| +.||.++|.+|++|++|.+.+++++++++.++..+|... + ....++
T Consensus 338 ~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~ 417 (622)
T PTZ00456 338 RYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTP 417 (622)
T ss_pred HHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHH
Confidence 999999984 678999999999999999999999999999999888642 1 123477
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceecccchHHHHHHhhccCcccCChHHHHH-HHHHHHHH
Q 016808 319 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRR-MIIGRALL 379 (382)
Q Consensus 319 ~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~-~~l~~~l~ 379 (382)
++|.++++.+.++++.++|++||.||+++++++|+|||++..++++|++++++ +.++|.++
T Consensus 418 iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dli~rkll 479 (622)
T PTZ00456 418 IAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVL 479 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999997 69999987
No 27
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=2.7e-56 Score=425.61 Aligned_cols=339 Identities=21% Similarity=0.266 Sum_probs=299.7
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+.+.+| +.|+.|++.||+++.+|++|||.|+++.+.+.++|++++.|+++++++.+|. .+...+..+|+++|+++|
T Consensus 17 ~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~ 95 (377)
T cd01163 17 RDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRW 95 (377)
T ss_pred hhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHH
Confidence 57778899 9999999999999999999999999999999999999999999999888886 556788899999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 191 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~ 191 (382)
++++.+|+.+ +.+++||++|+ .....++++++++||+|||+|.|+|++..|||++|.+++++ .+..+|+||.+.
T Consensus 96 l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~----~~~~~~lV~~~~ 169 (377)
T cd01163 96 FGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE----GKLVFAAVPTDR 169 (377)
T ss_pred HHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC----CcEEEEEEeCCC
Confidence 9999999966 46999998775 56667777888899999999999999999999999998653 246789999999
Q ss_pred CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-
Q 016808 192 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQRE- 270 (382)
Q Consensus 192 ~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~- 270 (382)
|||++.++|+++||+++++++|+|+||+||++++++.++.++. ........++.++++++|+++++++.+++|+++|.
T Consensus 170 ~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~ 248 (377)
T cd01163 170 PGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAALDDAVAYVRSRTR 248 (377)
T ss_pred CceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998999999999999999999999999999998877654 23345577889999999999999999999999995
Q ss_pred ccCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------CChhhhhHHHHHHHHHHHHHHHH
Q 016808 271 QFGR----PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK------------VDPKDCAGVILCAAERATQVTLQ 334 (382)
Q Consensus 271 ~~g~----~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~------------~~~~~~~~ak~~~~~~a~~~~~~ 334 (382)
+||. ++.++|.+|++|++|.+++++++++++.+++.++++. .....++++|+++++.+.++++.
T Consensus 249 ~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~ 328 (377)
T cd01163 249 PWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVVVTRLALDATSR 328 (377)
T ss_pred CCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6765 4689999999999999999999999999999887641 12345779999999999999999
Q ss_pred HHHhhcCceecccchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 335 AIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 335 ~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
++|++||.||+++++++|+|||++...+|...+ .....++.+++.
T Consensus 329 a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~~ 373 (377)
T cd01163 329 LFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYALN 373 (377)
T ss_pred HHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhcC
Confidence 999999999999999999999999999998875 555566666554
No 28
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=3.9e-55 Score=452.36 Aligned_cols=344 Identities=24% Similarity=0.343 Sum_probs=308.7
Q ss_pred CcH--HHHHHHH-HcCCCCCCCCcc------------------------CCCCCCCHHHHHHHHHHHHhccCchh-hHHh
Q 016808 38 QDV--NLWKLMG-NFNLHGITAPQE------------------------YGGLGLGYLYHCIAMEEISRASGSVG-LSYG 89 (382)
Q Consensus 38 ~~~--~~~~~l~-~~Gl~~~~vP~~------------------------~GG~~~~~~~~~~~~~~la~~~~~~a-~~~~ 89 (382)
.+| +.|+++. ++||+++.+|++ |||.|+++.+.+.++|++++++.+.. +...
T Consensus 440 ~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~ 519 (822)
T PLN02876 440 VHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCG 519 (822)
T ss_pred cCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhccc
Confidence 355 6777775 999999999996 99999999999999999999864422 2122
Q ss_pred hhhhHHHHHHHhcCCHHHHHhhhhhhhcCCceeEEEecCCC-CCCCcCCceeEEEEeCCeEEEEeEEEeecCC--CCCcE
Q 016808 90 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQT 166 (382)
Q Consensus 90 ~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~te~~-~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~--~~a~~ 166 (382)
.+...++..+..+|+++|+++|++++++|+.++|+++|||+ .|||..+..|+++++++||+|||+|.|+||+ ..+|+
T Consensus 520 ~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~ 599 (822)
T PLN02876 520 APDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRV 599 (822)
T ss_pred CcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCE
Confidence 22223446788999999999999999999999999999997 6799999999999999999999999999999 57999
Q ss_pred EEEEEEeCCC-CCCCCeEEEEEeCCCCCeeeccccccccCCCC--CeeeEEecceeeCCCCccCCCCchHHHHHhhhhHH
Q 016808 167 LVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGS--DTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 243 (382)
Q Consensus 167 ~lv~a~~~~~-~~~~~~~~flVp~~~~gv~~~~~~~~~G~~~~--~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~ 243 (382)
++|.++++++ ++.++.++|+||.+.|||++.++|+++|++++ ++++|.||||+||++++++..+.|+......+..+
T Consensus 600 ~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~ 679 (822)
T PLN02876 600 LIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPG 679 (822)
T ss_pred EEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhh
Confidence 9999997543 23356789999999999999889999999984 68999999999999999998888988888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-CChhhhhHHH
Q 016808 244 RLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-K-VDPKDCAGVI 321 (382)
Q Consensus 244 ~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~-~-~~~~~~~~ak 321 (382)
|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|++|++|.+++++++++++.++..++.. . +....++++|
T Consensus 680 r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK 759 (822)
T PLN02876 680 RLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAK 759 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998873 2 3456789999
Q ss_pred HHHHHHHHHHHHHHHHhhcCceecccchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 016808 322 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
+++++.+.++++.++|++||.||+.+++++|+|||++..++++|++++++..+++.++++
T Consensus 760 ~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 760 VAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999874
No 29
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.9e-54 Score=431.76 Aligned_cols=340 Identities=22% Similarity=0.322 Sum_probs=306.7
Q ss_pred ccCCcH--HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhh
Q 016808 35 TQLQDV--NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYL 112 (382)
Q Consensus 35 ~~~~~~--~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l 112 (382)
+.+.++ ++++.+++.|++++.+|++ ++.+...++|++++.|++++..+..|..+....|..+|+++|+++|+
T Consensus 92 ~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L 165 (686)
T PLN02636 92 EHRELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYF 165 (686)
T ss_pred HhhhhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHH
Confidence 344444 7778899999999999976 88899999999999999888777888777888999999999999999
Q ss_pred hhhhcCCceeEEEecCCCCCCCcCCceeEEEEe--CCeEEEE-----eEEEeecCCCC-CcEEEEEEEeCCC------CC
Q 016808 113 PKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTNGPV-AQTLVVYAKTDIK------AG 178 (382)
Q Consensus 113 ~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~--~~g~~l~-----G~k~~vs~~~~-a~~~lv~a~~~~~------~~ 178 (382)
+++.+|+.++|+++|||++|||+.++.|+|+++ +++|+|| |.|+|++|+.. +|+++|+|++..+ ++
T Consensus 166 ~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~ 245 (686)
T PLN02636 166 DGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVS 245 (686)
T ss_pred HHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCC
Confidence 999999999999999999999999999999998 6889999 99999999975 9999999998621 12
Q ss_pred CCCeEEEEEeCC-------CCCeeeccccccccCCCCCeeeEEecceeeCCCCccCC----------------CCchHHH
Q 016808 179 SKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ----------------EGKGVYV 235 (382)
Q Consensus 179 ~~~~~~flVp~~-------~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~----------------~~~g~~~ 235 (382)
..++.+|+||.+ .|||++.+.++++|+++.+++.+.||||+||.+++|+. .+.|+..
T Consensus 246 ~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~ 325 (686)
T PLN02636 246 DMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAA 325 (686)
T ss_pred CCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHH
Confidence 568999999987 59999999999999999999999999999999999953 2568888
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC------CcchhhHHHHHHHHHHHHHHHH----HHHHHHHH
Q 016808 236 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP------LGEFQFIQGKTADMYTALQSSR----SYVYSVAR 305 (382)
Q Consensus 236 ~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~------i~~~~~v~~~la~~~~~~~~~~----~~~~~~a~ 305 (382)
....+..+|+.+++.++|+++++++.+++|++.|.|||.| |.++|.+|++|++|.+.+++++ .+++.+++
T Consensus 326 ~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~ 405 (686)
T PLN02636 326 TLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSE 405 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999 9999999999999999999954 66666666
Q ss_pred HhcCCC-----CChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 306 DCDNGK-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 306 ~~~~~~-----~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
..+.+. +....++++|+++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++.++++.+++
T Consensus 406 ~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~ 485 (686)
T PLN02636 406 MKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLK 485 (686)
T ss_pred HHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHH
Confidence 554432 245678899999999999999999999999999999999999999999999999999999999999876
No 30
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=3.1e-53 Score=407.99 Aligned_cols=330 Identities=28% Similarity=0.451 Sum_probs=296.6
Q ss_pred HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCC-
Q 016808 41 NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE- 119 (382)
Q Consensus 41 ~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~- 119 (382)
++++.+.+.||+++ +|+++||.| ........+.++..+...+..+.+|. .+...|..+|+++| ++|++++.+|+
T Consensus 69 ~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~ 143 (418)
T cd01154 69 ALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPLTMTD-AAVYALRKYGPEEL-KQYLPGLLSDRY 143 (418)
T ss_pred HHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCcHHHHH-HHHHHHHHhCcHHH-HHHHHHHhCCCc
Confidence 56788899999999 777887655 34455567778887777766666666 68889999998886 46999999997
Q ss_pred ---ceeEEEecCCCCCCCcCCceeEEEEe-CCeEEEEeEEEeecCCCCCcEEEEEEEeCCC-CCCCCeEEEEEeCCCC--
Q 016808 120 ---HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKGMP-- 192 (382)
Q Consensus 120 ---~~~~~~~te~~~gsd~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~-~~~~~~~~flVp~~~~-- 192 (382)
.++|+++|||+.|||+....|+|+++ +|+|+|||+|.|+|++ .||+++|+|+++++ ++.+++++|+||++.|
T Consensus 144 ~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~ 222 (418)
T cd01154 144 KTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLARPEGAPAGARGLSLFLVPRLLEDG 222 (418)
T ss_pred ccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCC
Confidence 88999999999999999999999999 8899999999999999 99999999998754 3457899999999875
Q ss_pred ---CeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016808 193 ---GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 269 (382)
Q Consensus 193 ---gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r 269 (382)
||++.+.|+++|++++++++|.|+||. ++++|.++.|+..+...+...|+..++.++|+++++++.+++|+++|
T Consensus 223 ~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R 299 (418)
T cd01154 223 TRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHR 299 (418)
T ss_pred CCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999983 78999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--C------hhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 016808 270 EQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV--D------PKDCAGVILCAAERATQVTLQAIQCLGG 341 (382)
Q Consensus 270 ~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~--~------~~~~~~ak~~~~~~a~~~~~~~~~~~Gg 341 (382)
.+||+|+.++|.+|++|+++.+++++++++++.++..++.... . ...++++|+++++.+.++++.+++++||
T Consensus 300 ~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg 379 (418)
T cd01154 300 RAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGG 379 (418)
T ss_pred cCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998876421 1 2246779999999999999999999999
Q ss_pred ceecccchHHHHHHhhccCcccCChHHHHHHHHHHHHH
Q 016808 342 NGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 379 (382)
Q Consensus 342 ~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~ 379 (382)
.||.++++++|+|||++..++++|++++++..+.|.+.
T Consensus 380 ~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 380 NGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred cEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999875
No 31
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=5.2e-53 Score=421.77 Aligned_cols=344 Identities=19% Similarity=0.238 Sum_probs=311.2
Q ss_pred cccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhh
Q 016808 34 DTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYL 112 (382)
Q Consensus 34 d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l 112 (382)
|+...++ +.++.+.+.|++++.+|++ |.+ ++...+.++|++++.|++++..+..|.++....|..+|+++|+++|+
T Consensus 101 ~~~~~~~~~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L 177 (680)
T PLN02312 101 EQQREITMKRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWL 177 (680)
T ss_pred HHHHHhHHHHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHH
Confidence 4566777 9999999999999999985 333 68888999999999999888777888777888999999999999999
Q ss_pred hhhhcCCceeEEEecCCCCCCCcCCceeEEEEe--CCeEEEE-----eEEEeecCC-CCCcEEEEEEEeCCCCCCCCeEE
Q 016808 113 PKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSKGITA 184 (382)
Q Consensus 113 ~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~--~~g~~l~-----G~k~~vs~~-~~a~~~lv~a~~~~~~~~~~~~~ 184 (382)
+++.+|+.++|+++|||++|||+.++.|+|+++ +++|+|| |.|+|++|+ ..|++++|+|++..+.+..++.+
T Consensus 178 ~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~ 257 (680)
T PLN02312 178 KDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHA 257 (680)
T ss_pred HHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEE
Confidence 999999999999999999999999999999998 4679999 799999998 79999999999975545678999
Q ss_pred EEEeC---C---CCCeeeccccccccCCCCCeeeEEecceeeCCCCccCC----------------CCchHHHHHhhhhH
Q 016808 185 FIIEK---G---MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDL 242 (382)
Q Consensus 185 flVp~---~---~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~----------------~~~g~~~~~~~~~~ 242 (382)
|+||. + .|||++.+.++++|+++.+++.|.||||+||.+++|+. ++.|+...+..+..
T Consensus 258 FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~ 337 (680)
T PLN02312 258 FIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTS 337 (680)
T ss_pred EEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHH
Confidence 99982 3 79999999999999999999999999999999999983 56788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC----C---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----
Q 016808 243 ERLVLAAGPLGIMQACLDVVLPYVRQREQFGR----P---LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK---- 311 (382)
Q Consensus 243 ~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~----~---i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~---- 311 (382)
+|+.+++.++|+++++++.+++|++.|.|||. | |.++|.+|++|++|.++++++......+....+.+.
T Consensus 338 ~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~~~~~~ 417 (680)
T PLN02312 338 GRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRTPESN 417 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999995 4 999999999999999999998877777666554432
Q ss_pred -CChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 312 -VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 312 -~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++.++++.+++
T Consensus 418 ~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~ 487 (680)
T PLN02312 418 KAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLA 487 (680)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999999998875
No 32
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=2.9e-53 Score=403.64 Aligned_cols=332 Identities=20% Similarity=0.253 Sum_probs=288.2
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
.|+.+.+| +.|+.|++.||+++.+|++|||.|+++.+.+.++++|++.|+++++++..+. .....+..+++++|++.|
T Consensus 17 ~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~~~~~~~~~ 95 (370)
T cd01159 17 AERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFPPEAQEEVW 95 (370)
T ss_pred HHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCCHHHHHHHh
Confidence 56678899 9999999999999999999999999999999999999999999998766654 666778888999999888
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 191 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~ 191 (382)
++.. +...+ +..++.++|+++++||+|||+|.|+|++..+||++|.++++++++.+++++|+||++
T Consensus 96 ~~~~---~~~~~----------g~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~- 161 (370)
T cd01159 96 GDGP---DTLLA----------GSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFVVPRA- 161 (370)
T ss_pred CCCC---CceEE----------eeecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcceEEEEEhH-
Confidence 7642 10111 112346789999999999999999999999999999999865435567899999987
Q ss_pred CCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCC------chHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016808 192 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG------KGVY---VMMSGLDLERLVLAAGPLGIMQACLDVV 262 (382)
Q Consensus 192 ~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~------~g~~---~~~~~~~~~~~~~~a~~~G~~~~al~~~ 262 (382)
||++.+.|+.+||+++++++++|+||+||++++|+..+ .+.. ........+++.++++++|+++++++.+
T Consensus 162 -Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~ 240 (370)
T cd01159 162 -EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLGAAEGALAEF 240 (370)
T ss_pred -HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997542 2211 2234556778999999999999999999
Q ss_pred HHHhhhhhcc---CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--------ChhhhhHHHHHHHHHHHHH
Q 016808 263 LPYVRQREQF---GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV--------DPKDCAGVILCAAERATQV 331 (382)
Q Consensus 263 ~~~~~~r~~~---g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~ak~~~~~~a~~~ 331 (382)
++|+++|.+| |.|+.++|.+|+++++|.+.+++++++++.+++.++++.. ....+.++|+++++.+.++
T Consensus 241 ~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~aK~~~~e~~~~~ 320 (370)
T cd01159 241 LELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERARIRRDAAYAAKLSAEA 320 (370)
T ss_pred HHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 6789999999999999999999999999999998876421 1245778999999999999
Q ss_pred HHHHHHhhcCceecccchHHHHHHhhccCcccCChH-HHHHHHHHHHHHh
Q 016808 332 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS-EIRRMIIGRALLK 380 (382)
Q Consensus 332 ~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~-~~~~~~l~~~l~~ 380 (382)
++.+++++||.||.++++++|+|||+++..+|+|++ +++++.+++.+|+
T Consensus 321 ~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 321 VDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999 9999999999875
No 33
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.8e-50 Score=388.47 Aligned_cols=326 Identities=23% Similarity=0.357 Sum_probs=280.6
Q ss_pred HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHH-HhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCC
Q 016808 41 NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI-SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 119 (382)
Q Consensus 41 ~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~l-a~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~ 119 (382)
+.++.+.+.||.++..++++| .+......+.+-| +...+... +......+...+..+++++|+++|+|++.+|+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~g~~--cp~~mT~~a~~~l~~~~~e~~~~~lp~l~sg~ 164 (538)
T PRK11561 90 LLMQGLCANRVHNLAWEEDAR---SGAFVARAARFMLHAQVEAGTL--CPITMTFAATPLLLQMLPAPFQDWLTPLLSDR 164 (538)
T ss_pred HHHHHHHHcCCccCCCCCccC---chHHHHHHHHHHHHhhhhHHhh--chHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 556777789999999988775 2222222233333 22222222 22222244556666788999999999999997
Q ss_pred -------------ceeEEEecCCCCCCCcCCceeEEEEe-CCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEE
Q 016808 120 -------------HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 185 (382)
Q Consensus 120 -------------~~~~~~~te~~~gsd~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~f 185 (382)
.+.++++|||+.|||+....|+|+++ +|+|+|||.|+|+| ++.+|+++|+|++++ ++++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~~-----Gls~F 238 (538)
T PRK11561 165 YDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAKG-----GLSCF 238 (538)
T ss_pred cccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEECC-----ceEEE
Confidence 45699999999999999999999995 56799999999999 689999999999862 68999
Q ss_pred EEeCCCC-----CeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 016808 186 IIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLD 260 (382)
Q Consensus 186 lVp~~~~-----gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~ 260 (382)
+||++.| ||++.+.++++|++++++++|.|+|| .+++||.++.|+..+...+...|+..++.++|+++++++
T Consensus 239 lVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~ 315 (538)
T PRK11561 239 FVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFS 315 (538)
T ss_pred EEECCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 79998899999999999999999999 378999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC------hhhhhHHHHHHHHHHHHHHHH
Q 016808 261 VVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD------PKDCAGVILCAAERATQVTLQ 334 (382)
Q Consensus 261 ~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~ak~~~~~~a~~~~~~ 334 (382)
.+++|+++|.+||+||+++|.+|++|++|.+++++++++++.++..+|.+.+. .....++|+++++.+.++++.
T Consensus 316 ~A~~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~ 395 (538)
T PRK11561 316 VAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFVAE 395 (538)
T ss_pred HHHHHHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876422 223457999999999999999
Q ss_pred HHHhhcCceecccchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 335 AIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 335 ~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
++|++||.||+++++++|+|||++..+|++|++++++..+.+.+.+
T Consensus 396 Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 396 AMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred HHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999875
No 34
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=3.2e-49 Score=370.27 Aligned_cols=283 Identities=44% Similarity=0.710 Sum_probs=264.7
Q ss_pred HHHHHHHhcCCHHHHHhhhhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEe
Q 016808 94 LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 173 (382)
Q Consensus 94 ~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 173 (382)
++...+..+|+++|+++|++++.+|+.+++++++||.+|+|...+.++++++++||+|||+|.|+|++..+||++|++++
T Consensus 43 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~ 122 (327)
T cd00567 43 LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLART 122 (327)
T ss_pred hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEe
Confidence 34467788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-CCCCeEEEEEeCCCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHH
Q 016808 174 DIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPL 252 (382)
Q Consensus 174 ~~~~-~~~~~~~flVp~~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~ 252 (382)
++++ +..++.+|+||++.|||++.+.|+.+||++++++++.|+||+||++++++.++.++......+...++.++++++
T Consensus 123 ~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~ 202 (327)
T cd00567 123 DEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVAL 202 (327)
T ss_pred CCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 6532 345678999999999999999999999999999999999999999999999888887788889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ChhhhhHHHHHHHHHHHHH
Q 016808 253 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPKDCAGVILCAAERATQV 331 (382)
Q Consensus 253 G~~~~al~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~ak~~~~~~a~~~ 331 (382)
|+++++++.+++|+++|.+||.|+.++|.+|++|+++...+++++++++.++..++...+ ......++|.++++.+.++
T Consensus 203 G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~a~~~ 282 (327)
T cd00567 203 GAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEAAREV 282 (327)
T ss_pred HHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987654 5677889999999999999
Q ss_pred HHHHHHhhcCceecccchHHHHHHhhccCcccCChHHHHHHHHHH
Q 016808 332 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGR 376 (382)
Q Consensus 332 ~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~ 376 (382)
++.+++++||.||..+++++|+|||++.+.+.+|++++++..+++
T Consensus 283 ~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 283 ADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999987753
No 35
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=341.50 Aligned_cols=343 Identities=31% Similarity=0.484 Sum_probs=320.3
Q ss_pred ccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhh
Q 016808 33 DDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKY 111 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~ 111 (382)
..+++.|+ +...++...|++|.++ +-||=.|++......+.+|+.+.|.+.-.....|+.+++..|..+|+++||++|
T Consensus 81 a~r~e~F~~~i~pemGsmGvlG~ti-kGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkY 159 (432)
T KOG0138|consen 81 ANRNEVFDREIIPEMGSMGVLGPTI-KGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKY 159 (432)
T ss_pred HhhhccCChhhhhhhhccccccCcc-cCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhh
Confidence 67788898 9999999999999888 579999999999999999999999998877888888999999999999999999
Q ss_pred hhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeCCe--EEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeC
Q 016808 112 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 189 (382)
Q Consensus 112 l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~~g--~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~ 189 (382)
+|.+++|+.++||++|||.+|||+.+..|+|+.++.+ |.|||+|.|++|++.||+++|.||...+ ..+.-|+|++
T Consensus 160 lPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~---n~I~GFi~~k 236 (432)
T KOG0138|consen 160 LPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETD---NKIRGFILEK 236 (432)
T ss_pred hhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccC---CceeeEEEec
Confidence 9999999999999999999999999999999999988 9999999999999999999999998743 3577899999
Q ss_pred CCCCeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016808 190 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 269 (382)
Q Consensus 190 ~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r 269 (382)
+.+|.+......++++|++.++.+-+|||+||++++|.... ++.-....+...|..++=..+|+++.+++.+++|...|
T Consensus 237 ~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~-s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldR 315 (432)
T KOG0138|consen 237 GMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGAS-SLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDR 315 (432)
T ss_pred CCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCcc-ccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHH
Confidence 99999988888999999999999999999999999995443 33334566788899999999999999999999999999
Q ss_pred hccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccch
Q 016808 270 EQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 349 (382)
Q Consensus 270 ~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 349 (382)
+|||+|++.+|.+|.+|++|..++..+-.+..+..+.-|++...+..+++.|.+.+--+.++++.+.+++||.|..+++-
T Consensus 316 kQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyh 395 (432)
T KOG0138|consen 316 KQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYH 395 (432)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 350 TGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 350 l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
+-|.+-|....-.++|+.+++...++|.+.+
T Consensus 396 v~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138|consen 396 VIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred HHHHHcCccceecccccchHHHHhhhhhhhh
Confidence 9999999999999999999999999998865
No 36
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-47 Score=381.32 Aligned_cols=300 Identities=20% Similarity=0.253 Sum_probs=268.2
Q ss_pred cCchhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCCceeEEEecCCCCCCCcCCceeEEEEe--CCeEEEE-----e
Q 016808 81 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----G 153 (382)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~--~~g~~l~-----G 153 (382)
++.....+..|.++....|..+|+++|+++|+|++.+|+.++|+++|||++|||+.++.|+|+.+ +++|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 34444445667667777899999999999999999999999999999999999999999999986 5779998 9
Q ss_pred EEEeecC-CCCCcEEEEEEEeCCCCCCCCeEEEEEeC-------CCCCeeeccccccccCCCCCeeeEEecceeeCCCCc
Q 016808 154 NKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-------GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 225 (382)
Q Consensus 154 ~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~flVp~-------~~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~v 225 (382)
+|+|++| +..||+++|+|++..+.+..++.+|+||. +.|||++.+.++++|+++.+++.+.||||+||.+++
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl 247 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL 247 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence 9999997 68999999999997554567899999993 249999999999999999999999999999999999
Q ss_pred cCC------CCc----h-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC------CCcchhhHHHHHHH
Q 016808 226 LGQ------EGK----G-VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR------PLGEFQFIQGKTAD 288 (382)
Q Consensus 226 lg~------~~~----g-~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~------~i~~~~~v~~~la~ 288 (382)
|+. .+. | +......+...|+.+++.++|+++++++.+++|++.|.|||+ ||.++|.+|++|++
T Consensus 248 Lg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~ 327 (646)
T PTZ00460 248 LARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLP 327 (646)
T ss_pred CCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHH
Confidence 985 331 3 556667778899999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC------CC------ChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHHHHHHh
Q 016808 289 MYTALQSSRSYVYSVARDCDNG------KV------DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 356 (382)
Q Consensus 289 ~~~~~~~~~~~~~~~a~~~~~~------~~------~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd 356 (382)
+.+.+++++.+.+.+++..+.. .+ ....++++|.++++.+.++++.|+|+|||.||+.+++++++|||
T Consensus 328 ~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd 407 (646)
T PTZ00460 328 LLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFD 407 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHH
Confidence 9999999999999988877642 11 24568899999999999999999999999999999999999999
Q ss_pred hccCcccCChHHHHHHHHHHHHHh
Q 016808 357 AKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 357 a~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
++...+++|++++++.++++.+++
T Consensus 408 a~~~~t~eG~n~vl~~~iar~ll~ 431 (646)
T PTZ00460 408 MSPNITLEGENQIMYLQLARYLLK 431 (646)
T ss_pred hccceeecCcHHHHHHHHHHHHHH
Confidence 999999999999999999998875
No 37
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-47 Score=367.88 Aligned_cols=295 Identities=27% Similarity=0.314 Sum_probs=264.6
Q ss_pred HHHHHHHc-CCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCCc
Q 016808 42 LWKLMGNF-NLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 120 (382)
Q Consensus 42 ~~~~l~~~-Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~ 120 (382)
+.+.++++ ||+++.+|++|||.|+++.+.+.++|++++.+++.++.+..|..++...+..+|+++|+++|+|++++|+.
T Consensus 55 ~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~ 134 (520)
T PTZ00457 55 IRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTI 134 (520)
T ss_pred HHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCc
Confidence 33467788 99999999999999999999999999999988777665555654666788889999999999999999999
Q ss_pred eeEEEecCCCCCCCcCCceeEEEEe-CCeEEEEeEEEeecCCCCCcEEEEEEEeCC----CCC---CCCeEEEEEeCCCC
Q 016808 121 VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDI----KAG---SKGITAFIIEKGMP 192 (382)
Q Consensus 121 ~~~~~~te~~~gsd~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~----~~~---~~~~~~flVp~~~~ 192 (382)
+++++++| +.|||.....|+|+++ +|+|+|||+|.|+ ++..||+++|+|++++ +.+ .+++++|+||++.|
T Consensus 135 i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dap 212 (520)
T PTZ00457 135 MMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAK 212 (520)
T ss_pred EEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCC
Confidence 99999988 8899999999999986 4579999999966 8999999999999853 111 24689999999999
Q ss_pred CeeeccccccccCCCCCeeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016808 193 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 272 (382)
Q Consensus 193 gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~ 272 (382)
||++.. ++|+|||| |.+++||.++.|+...+..+..+|+.+++.++|+++++++.+++|++
T Consensus 213 GVtv~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~----- 273 (520)
T PTZ00457 213 GVSVNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA----- 273 (520)
T ss_pred ceEEec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 999852 58999997 99999999999999999999999999999999999999999999987
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCChhhhhHHHHHHH---HHHHHHHHHHHHhhcCceecccc
Q 016808 273 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-KVDPKDCAGVILCAA---ERATQVTLQAIQCLGGNGYVNEY 348 (382)
Q Consensus 273 g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~ak~~~~---~~a~~~~~~~~~~~Gg~g~~~~~ 348 (382)
+|.+|++|++|.+.++++|+++|.+++.+|.+ .+...+++++|+|++ +.+..++++++| +++
T Consensus 274 ------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~ 339 (520)
T PTZ00457 274 ------EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PST 339 (520)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCc
Confidence 47899999999999999999999999999987 457899999999999 888888888877 899
Q ss_pred hHHHHHHhhccCcccCChHHHHH
Q 016808 349 ATGRLLRDAKLYEIGAGTSEIRR 371 (382)
Q Consensus 349 ~l~r~~rda~~~~~~~g~~~~~~ 371 (382)
|++|++||++.+.+.+|++++++
T Consensus 340 ~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 340 TLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999988
No 38
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=1.6e-47 Score=381.41 Aligned_cols=315 Identities=23% Similarity=0.263 Sum_probs=282.3
Q ss_pred CHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCCceeEEEecCCCCCCCcCCceeEEEEe
Q 016808 66 GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV 145 (382)
Q Consensus 66 ~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~ 145 (382)
++.+...+.|+++..|++++..+..|.++....|..+|+++|+++|++++.+|+.++|+++|||++|||+..+.|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67888899999999999887767788767888999999999999999999999999999999999999999999999999
Q ss_pred C--CeEEEE-----eEEEeecCCC-CCcEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeeeccccccccCCCCCe
Q 016808 146 D--GGYIIN-----GNKMWCTNGP-VAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDT 210 (382)
Q Consensus 146 ~--~g~~l~-----G~k~~vs~~~-~a~~~lv~a~~~~~~~~~~~~~flVp~~-------~~gv~~~~~~~~~G~~~~~~ 210 (382)
+ ++|+|| |.|+|++|+. .+++++|+|++..+++..++.+|+||.. .|||++.+.++++|+++.++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 889999 9999999975 4999999999865445578999999963 39999999999999999999
Q ss_pred eeEEecceeeCCCCccCC----------------CCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 016808 211 CELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR 274 (382)
Q Consensus 211 ~~v~f~~v~Vp~~~vlg~----------------~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~ 274 (382)
+.+.||||+||.+++|+. ++.++..+...+..+|+.+++.++|.++++++.+++|++.|.|||.
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~ 319 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGP 319 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCC
Confidence 999999999999999976 5677788888889999999999999999999999999999999999
Q ss_pred C-------CcchhhHHHHHHHHHHHHHHHHHHHHH----HH---HHhcCCC-----CChhhhhHHHHHHHHHHHHHHHHH
Q 016808 275 P-------LGEFQFIQGKTADMYTALQSSRSYVYS----VA---RDCDNGK-----VDPKDCAGVILCAAERATQVTLQA 335 (382)
Q Consensus 275 ~-------i~~~~~v~~~la~~~~~~~~~~~~~~~----~a---~~~~~~~-----~~~~~~~~ak~~~~~~a~~~~~~~ 335 (382)
| |.++|.+|++|+++.+..++++..... .. ..++++. +....++++|.++++.+.++++.|
T Consensus 320 ~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~ 399 (610)
T cd01150 320 KPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQEC 399 (610)
T ss_pred CCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 999999999999999999877643332 22 2333331 234568899999999999999999
Q ss_pred HHhhcCceecccchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 336 IQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 336 ~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
+|+|||.||+.++++++++||++...+++|++++++.++++.+++
T Consensus 400 rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~ 444 (610)
T cd01150 400 REACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLK 444 (610)
T ss_pred HHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876
No 39
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=5.7e-44 Score=356.04 Aligned_cols=293 Identities=21% Similarity=0.272 Sum_probs=256.5
Q ss_pred HhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCCceeEEEecCCCCCCCcCCceeEEEEe--CCeEEEE-----eEEEeecC
Q 016808 88 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN 160 (382)
Q Consensus 88 ~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~--~~g~~l~-----G~k~~vs~ 160 (382)
+..|..+....|..+|+++|+++|+|++.+|+.++|+++|||++|||+.++.|+|+.+ +++|+|| |+|+|++|
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~ 178 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG 178 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence 4456556677899999999999999999999999999999999999999999999998 5789998 99999999
Q ss_pred C-CCCcEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeeecccccccc---CCCCCeeeEEecceeeCCCCccCCC
Q 016808 161 G-PVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQE 229 (382)
Q Consensus 161 ~-~~a~~~lv~a~~~~~~~~~~~~~flVp~~-------~~gv~~~~~~~~~G---~~~~~~~~v~f~~v~Vp~~~vlg~~ 229 (382)
+ ..|++++|+|++..+++..++..|+||.+ .|||++.+.++++| +++.+++.+.||||+||.+++|+..
T Consensus 179 ~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~ 258 (664)
T PLN02443 179 LGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRL 258 (664)
T ss_pred CcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcc
Confidence 7 78999999999865545678999999975 79999999999999 5668899999999999999999753
Q ss_pred Cc----hH--------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCc--chhhH-----HHHHHHHH
Q 016808 230 GK----GV--------YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLG--EFQFI-----QGKTADMY 290 (382)
Q Consensus 230 ~~----g~--------~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~i~--~~~~v-----~~~la~~~ 290 (382)
++ |. ......+...|+.+++.++|.++++++.+++|+..|.|||.|++ ++|.+ |++|.++.
T Consensus 259 ~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~l 338 (664)
T PLN02443 259 SKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLL 338 (664)
T ss_pred cccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHH
Confidence 21 21 23345567889999999999999999999999999999999877 55555 99999999
Q ss_pred HHHHHHHHHHHHHHHHhcC-------CC-C----ChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHHHHHHhhc
Q 016808 291 TALQSSRSYVYSVARDCDN-------GK-V----DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 358 (382)
Q Consensus 291 ~~~~~~~~~~~~~a~~~~~-------~~-~----~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~ 358 (382)
+.+++++.+.+.++...++ +. . ....++++|.++++.+.++++.|+|+|||.||+.++++++++||++
T Consensus 339 a~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~ 418 (664)
T PLN02443 339 ASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYV 418 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhh
Confidence 9999999999988877653 11 1 1223789999999999999999999999999999999999999999
Q ss_pred cCcccCChHHHHHHHHHHHHHh
Q 016808 359 LYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 359 ~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
...+++|++++++.++++.+++
T Consensus 419 ~~~t~EGdn~Vl~~~iar~ll~ 440 (664)
T PLN02443 419 PACTYEGDNVVLLLQVARFLMK 440 (664)
T ss_pred cceeecCcHHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 40
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=3.4e-44 Score=304.08 Aligned_cols=335 Identities=25% Similarity=0.350 Sum_probs=299.4
Q ss_pred HHHcCCCCCCCCccC--CCCCCCHHHHHHHHHHHHhcc-CchhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCCcee
Q 016808 46 MGNFNLHGITAPQEY--GGLGLGYLYHCIAMEEISRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 122 (382)
Q Consensus 46 l~~~Gl~~~~vP~~~--GG~~~~~~~~~~~~~~la~~~-~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~ 122 (382)
.+..|++.+++|... =|.|++..+.+-++|.+++.- ++--+.........+..+..||+++|+.+||-++++|+...
T Consensus 36 aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~irS 115 (392)
T KOG1469|consen 36 AKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIRS 115 (392)
T ss_pred HHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCcee
Confidence 345899999999654 367899999999999999853 22222233334466788999999999999999999999999
Q ss_pred EEEecCCC-CCCCcCCceeEEEEeCCeEEEEeEEEeecCC--CCCcEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeeec
Q 016808 123 ALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTA 197 (382)
Q Consensus 123 ~~~~te~~-~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~--~~a~~~lv~a~~~~~--~~~~~~~~flVp~~~~gv~~~ 197 (382)
||++|||+ ..||..+..+...++++.|+|||+|+|+||+ +.+-+.++..+++.. +.....++.+||+++|||++.
T Consensus 116 cFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGvkii 195 (392)
T KOG1469|consen 116 CFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGVKII 195 (392)
T ss_pred eEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCeeEe
Confidence 99999999 5689999999999999999999999999997 556788888888765 345567899999999999999
Q ss_pred cccccccCCCCC--eeeEEecceeeCCCCccCCCCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 016808 198 QKLDKLGMRGSD--TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP 275 (382)
Q Consensus 198 ~~~~~~G~~~~~--~~~v~f~~v~Vp~~~vlg~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~ 275 (382)
++...+|....+ ..+++|+||+||..+++-.++.|+...+..+..+|+.+|+-.+|.++++++...+.+..|..||++
T Consensus 196 RpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk~ 275 (392)
T KOG1469|consen 196 RPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGKK 275 (392)
T ss_pred eeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcch
Confidence 999999987654 578999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHHHH
Q 016808 276 LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG--KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRL 353 (382)
Q Consensus 276 i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~ 353 (382)
+.++..+.+.|++...++|.+|.++..+++.+|.- .....+.+|.|+.+...+.++++.++|.+||.|...+.|+.++
T Consensus 276 l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l 355 (392)
T KOG1469|consen 276 LVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANL 355 (392)
T ss_pred hhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEE
Confidence 99999999999999999999999999999999864 3456778999999999999999999999999999999999999
Q ss_pred HHhhccCcccCChHHHHHHHHHHHHHh
Q 016808 354 LRDAKLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 354 ~rda~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
|.-++..++.+|++++++..+++.-++
T Consensus 356 ~~~~r~lriadgPd~vhL~ai~~le~~ 382 (392)
T KOG1469|consen 356 YAIARVLRIADGPDEVHLSAIAKLELR 382 (392)
T ss_pred EEEeeeEEeccCCCccchhhhhhhhHH
Confidence 999999999999999999999887655
No 41
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-33 Score=259.94 Aligned_cols=343 Identities=23% Similarity=0.293 Sum_probs=289.3
Q ss_pred ccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHhhhh
Q 016808 35 TQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLP 113 (382)
Q Consensus 35 ~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~ 113 (382)
++.+.- ..|..+.+.|.+....-++ .--.......++|.++.+|.|++.-+..|..+-...+..+||+..++ |+.
T Consensus 74 ~qRel~~~r~~~l~~~gv~~~~~~~~---~~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~ 149 (661)
T KOG0135|consen 74 EQRELCMKRIKRLVELGVFKFWLVED---GPEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQ 149 (661)
T ss_pred HHHHHHHHHHHHHHHhccCcceeecC---chHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHh
Confidence 344444 5556666667665444332 11234467889999999999999999999988889999999999887 999
Q ss_pred hhhcCCceeEEEecCCCCCCCcCCceeEEEEe--CCeEEEE-----eEEEeecC-CCCCcEEEEEEEeCCCCCCCCeEEE
Q 016808 114 KLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAF 185 (382)
Q Consensus 114 ~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~--~~g~~l~-----G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~f 185 (382)
++-.-+.++||++||.+||||..+.+|+|+.+ .+.++|| ..|.||.| +.+|+|.+|+|+.--+....|+..|
T Consensus 150 ~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~F 229 (661)
T KOG0135|consen 150 KTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGF 229 (661)
T ss_pred hhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeE
Confidence 99999999999999999999999999999998 5779998 77999998 4889999999998766567789999
Q ss_pred EEeCC-------CCCeeeccccccccCCCCCeeeEEecceeeCCCCccCC----------------CCchHHHHHhhhhH
Q 016808 186 IIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDL 242 (382)
Q Consensus 186 lVp~~-------~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vlg~----------------~~~g~~~~~~~~~~ 242 (382)
|||.. -|||+|.+...+.|++|.+++-+.|+||+||.+++|.. +++-+-.....+..
T Consensus 230 iiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~ 309 (661)
T KOG0135|consen 230 IIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSS 309 (661)
T ss_pred EEEeecccccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhccccc
Confidence 99963 38999999999999999999999999999999998832 22344456667889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC-------CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Q 016808 243 ERLVLAAGPLGIMQACLDVVLPYVRQREQFGR-------PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG----- 310 (382)
Q Consensus 243 ~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~-------~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~----- 310 (382)
+|+.++..++|.++-++..+++|+..|.|||. ||.++|..|++|--+.+...++.-..........+.
T Consensus 310 GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~ 389 (661)
T KOG0135|consen 310 GRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTN 389 (661)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999983 578999999999888888887776665554443322
Q ss_pred -----CCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 016808 311 -----KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 311 -----~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
.+....++..|.+++....++.++|.+.|||.||...+++..+.-|-..+..++|.|.+++.+.++.|+++
T Consensus 390 ~~~n~keiHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~ 465 (661)
T KOG0135|consen 390 EGVNSKEIHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQ 465 (661)
T ss_pred cccchhHHHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHH
Confidence 12234466789999999999999999999999999999999999999999999999999999999999874
No 42
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.96 E-value=6.6e-27 Score=225.66 Aligned_cols=239 Identities=18% Similarity=0.237 Sum_probs=199.3
Q ss_pred HhcCCH--HHHHhhhhhhhcCCceeEEEecCCCCC-C-------CcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEE
Q 016808 100 VRHGSP--AQKDKYLPKLISGEHVGALAMSEPNAG-S-------DVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 169 (382)
Q Consensus 100 ~~~g~~--~~~~~~l~~l~~g~~~~~~~~te~~~g-s-------d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv 169 (382)
..++++ +-..+|+..+.+.+...+.+++.|... | |.....-..+++++||+|||.|.|+|++ .+|+++|
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V 197 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILI 197 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEE
Confidence 445544 456889999999999999999998632 1 2222223456778999999999999996 9999999
Q ss_pred EEEeCCCCCC-C--CeEEEEEeCCCCCeeeccccccccCCCC-----------CeeeEEecceeeCCCCc--cCCC---C
Q 016808 170 YAKTDIKAGS-K--GITAFIIEKGMPGFSTAQKLDKLGMRGS-----------DTCELVFENCFVPNENV--LGQE---G 230 (382)
Q Consensus 170 ~a~~~~~~~~-~--~~~~flVp~~~~gv~~~~~~~~~G~~~~-----------~~~~v~f~~v~Vp~~~v--lg~~---~ 230 (382)
++++...++. . -.+.|+||.++||+++....+.+|.++. ..+.|.||||+||+++| +|+. +
T Consensus 198 ~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~ 277 (477)
T TIGR02309 198 FPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCN 277 (477)
T ss_pred eccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHH
Confidence 9988653222 2 2689999999999999988888888876 66999999999999999 7877 5
Q ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016808 231 KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG 310 (382)
Q Consensus 231 ~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~ 310 (382)
.++.... .....+..++|.+..+++.++.++.. ..++.++.++|.||.+|++|.+.++++++++++++...+.+
T Consensus 278 ~~f~~~~-----~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~ 351 (477)
T TIGR02309 278 NAYAATG-----AVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKEN 351 (477)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 5554332 22556888899999999999999999 89999999999999999999999999999999999999885
Q ss_pred C-----CChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecc
Q 016808 311 K-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVN 346 (382)
Q Consensus 311 ~-----~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~ 346 (382)
. +....++++|+++++...++. .++|++||.|+..
T Consensus 352 ~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 352 AYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 3 457889999999999999995 9999999988874
No 43
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.91 E-value=4.7e-23 Score=170.77 Aligned_cols=150 Identities=40% Similarity=0.618 Sum_probs=146.1
Q ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016808 230 GKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN 309 (382)
Q Consensus 230 ~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~ 309 (382)
|+|+..+...+...|+..++..+|.++.+++.+.+|+++|.++|+|+.++|.++++|+++..+++++++++++++...+.
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~ 80 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDA 80 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhcccccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHHHHHHhhccCcccCChHHHHHHHHHHHHH
Q 016808 310 GKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 379 (382)
Q Consensus 310 ~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~~~~~~~l~~~l~ 379 (382)
+.....+.+++|+++++.+.++++.+++++|+.||.+++++++++||++.+++++|++++++..+++.+|
T Consensus 81 ~~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 81 GQNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp TSSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 9888999999999999999999999999999999999999999999999999999999999999999986
No 44
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.91 E-value=1.6e-23 Score=198.84 Aligned_cols=300 Identities=21% Similarity=0.268 Sum_probs=242.1
Q ss_pred CchhhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCCceeEEEecCCCCCCCcCCceeEEEEeC--CeEEEE-----eE
Q 016808 82 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIIN-----GN 154 (382)
Q Consensus 82 ~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~te~~~gsd~~~~~~~a~~~~--~g~~l~-----G~ 154 (382)
..-+..+..|.++....+..-|++||.++|+.+....+.++|++-||-+||+++.++.|+|+.+. +.++|| ..
T Consensus 105 ~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~ 184 (670)
T KOG0136|consen 105 GQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTAT 184 (670)
T ss_pred ccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCccee
Confidence 34344456788888899999999999999999999999999999999999999999999999986 459987 88
Q ss_pred EEeecC-CCCCcEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeeeccccccccCCCCCeeeEEecceeeCCCCcc
Q 016808 155 KMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 226 (382)
Q Consensus 155 k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~flVp~~-------~~gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~vl 226 (382)
|+|..| +..++|.+|.|+..-++...++..|+||.. -|||++.+...++|+++.+++-+.||||+||.+++|
T Consensus 185 KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmL 264 (670)
T KOG0136|consen 185 KWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNML 264 (670)
T ss_pred cccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhh
Confidence 999988 467789999999987767788999999963 489999999999999999999999999999999887
Q ss_pred CCC----Cch-------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC-------CCcchhhHHHHHHH
Q 016808 227 GQE----GKG-------VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR-------PLGEFQFIQGKTAD 288 (382)
Q Consensus 227 g~~----~~g-------~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~-------~i~~~~~v~~~la~ 288 (382)
-.. .+| .......+-+.|..+..-..=....|...+++|+.-|.|+.. .|.++|..|.+|=-
T Consensus 265 mr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP 344 (670)
T KOG0136|consen 265 MRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFP 344 (670)
T ss_pred hhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhH
Confidence 210 011 111122233345455555566677888999999999998742 37899999999866
Q ss_pred HHHHHHHHHHHH-------HHHHHHhcCCC-----CChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHHHHHHh
Q 016808 289 MYTALQSSRSYV-------YSVARDCDNGK-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 356 (382)
Q Consensus 289 ~~~~~~~~~~~~-------~~~a~~~~~~~-----~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd 356 (382)
..+...+-+-.. ......++.+. +.....+-.|..++..+.+-++.|...|||.||..-+.+..+|-.
T Consensus 345 ~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~ 424 (670)
T KOG0136|consen 345 QLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGV 424 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceee
Confidence 666554433332 33444454442 233446678999999999999999999999999999999999999
Q ss_pred hccCcccCChHHHHHHHHHHHHHhc
Q 016808 357 AKLYEIGAGTSEIRRMIIGRALLKQ 381 (382)
Q Consensus 357 a~~~~~~~g~~~~~~~~l~~~l~~~ 381 (382)
+-....++|.|-+++-+++|.|+|.
T Consensus 425 ~v~~CTYEGEN~VmlLQ~ARfLmKs 449 (670)
T KOG0136|consen 425 AVGACTYEGENTVLLLQVARFLVKS 449 (670)
T ss_pred eeeeeeeeccceeehHHHHHHHHHH
Confidence 9999999999999999999999873
No 45
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=9.8e-15 Score=135.89 Aligned_cols=240 Identities=16% Similarity=0.192 Sum_probs=165.3
Q ss_pred cCCH--HHHHhhhhhhhcCCceeEEEecCCCCCCC-----cCC--c-eeEEEEeCCeEEEEeEEEeecCCCCCcEEEEE-
Q 016808 102 HGSP--AQKDKYLPKLISGEHVGALAMSEPNAGSD-----VVG--M-KCKADRVDGGYIINGNKMWCTNGPVAQTLVVY- 170 (382)
Q Consensus 102 ~g~~--~~~~~~l~~l~~g~~~~~~~~te~~~gsd-----~~~--~-~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~- 170 (382)
++++ +-..+|+..+...+...+.+++.|..... ..+ . --..+..++|.+|+|.|..+|++..+|..+|+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P 204 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP 204 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence 4444 45678999999999999999999863211 111 1 22235568999999999999999999999988
Q ss_pred EEeCCCCCCCCeEEEEEeCCCCCeeecccc---ccccCCCCCe------------eeEEecceeeCCCCccCCCC----c
Q 016808 171 AKTDIKAGSKGITAFIIEKGMPGFSTAQKL---DKLGMRGSDT------------CELVFENCFVPNENVLGQEG----K 231 (382)
Q Consensus 171 a~~~~~~~~~~~~~flVp~~~~gv~~~~~~---~~~G~~~~~~------------~~v~f~~v~Vp~~~vlg~~~----~ 231 (382)
.+.-..++..-...|.||+|+|||++.... ..-|+.+.+. +-|.||||+||+++|+-... .
T Consensus 205 t~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~ 284 (493)
T COG2368 205 TRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAY 284 (493)
T ss_pred ccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHH
Confidence 443322344566899999999999886443 2222222222 34999999999999884332 1
Q ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016808 232 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK 311 (382)
Q Consensus 232 g~~~~~~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~ 311 (382)
.+.....+...++...+.+..+..+..+-.+...++ -..+.++++||.+|++|.+..+.++++...++......+
T Consensus 285 ~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~-----~~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~ 359 (493)
T COG2368 285 AWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAE-----TNGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNP 359 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-----hhCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 222222222233333333333333333332222222 124679999999999999999999999999998877653
Q ss_pred -----CChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecc
Q 016808 312 -----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVN 346 (382)
Q Consensus 312 -----~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~ 346 (382)
|....+..+|.++.....++.+.+.++.||.-.+.
T Consensus 360 ~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~l 399 (493)
T COG2368 360 NGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIITL 399 (493)
T ss_pred CCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceeec
Confidence 66788889999999999999999999998755443
No 46
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.69 E-value=5e-16 Score=125.91 Aligned_cols=123 Identities=24% Similarity=0.303 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc--cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCC----h
Q 016808 245 LVLAAGPLGIMQACLDVVLPYVRQREQ--FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD----NGKVD----P 314 (382)
Q Consensus 245 ~~~~a~~~G~~~~al~~~~~~~~~r~~--~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~----~~~~~----~ 314 (382)
+.++++++|+++++++.++++++.|.. .+.++.+.|.+|.+|+++...+++++++++.++..++ .+.+. .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 468899999999999999999999987 5788999999999999999999999999999999844 44432 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHHHHHHhhccCcccCChH
Q 016808 315 KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS 367 (382)
Q Consensus 315 ~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rda~~~~~~~g~~ 367 (382)
....+.|.++.+.+.++++.+++++|+.++..++|++|+|||+++...|...+
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 34556789999999999999999999999999999999999999999997654
No 47
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.63 E-value=6.2e-16 Score=121.54 Aligned_cols=103 Identities=35% Similarity=0.614 Sum_probs=89.8
Q ss_pred cHHHHhHHhhhhhhcccccccccccccccccCCcH-HHHHHHHHcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCch
Q 016808 6 GARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQDV-NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 84 (382)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~l~~~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~ 84 (382)
.+++++++.+.+.... .|+++.+| +.|+.+.+.||+++.+|++|||.++++.+.+.+++++++.|.++
T Consensus 10 ~~~~~~~~~~~~~~~~-----------~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~ 78 (113)
T PF02771_consen 10 EAREFAEEEIAPHAAE-----------WDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASL 78 (113)
T ss_dssp HHHHHHHHHTHHHHHH-----------HHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHchHHHHH-----------HHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccc
Confidence 4667777766665544 45566899 99999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCC
Q 016808 85 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 119 (382)
Q Consensus 85 a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~ 119 (382)
++.+..|.+++...|..+|+++|+++|+|++++|+
T Consensus 79 ~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 79 AFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred cchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 99888887677789999999999999999999986
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.61 E-value=2.7e-13 Score=130.90 Aligned_cols=230 Identities=12% Similarity=0.057 Sum_probs=152.2
Q ss_pred HHHHhhhhhhhcCCceeEEEecCCCCCCC------cCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEE-EEEeCC-CC
Q 016808 106 AQKDKYLPKLISGEHVGALAMSEPNAGSD------VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV-YAKTDI-KA 177 (382)
Q Consensus 106 ~~~~~~l~~l~~g~~~~~~~~te~~~gsd------~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv-~a~~~~-~~ 177 (382)
+-..+|+..+.+.+...+.+++.|..... ....--..+++++|++|+|.|..+|+++.+|.++| +....- .+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 45688999999999999999999863211 11112344667899999999999999999999988 443311 12
Q ss_pred CCCCeEEEEEeCCCCCeeeccccccccCC----------------CCCeeeEEecceeeCCCCccCCCCch----HHHHH
Q 016808 178 GSKGITAFIIEKGMPGFSTAQKLDKLGMR----------------GSDTCELVFENCFVPNENVLGQEGKG----VYVMM 237 (382)
Q Consensus 178 ~~~~~~~flVp~~~~gv~~~~~~~~~G~~----------------~~~~~~v~f~~v~Vp~~~vlg~~~~g----~~~~~ 237 (382)
+.+-...|.||.++|||++.... ...+. +-.-+-|.||||+||+++|+-..+-. +....
T Consensus 216 d~dyAvaFavP~dtpGlk~IcR~-s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~ 294 (519)
T TIGR02310 216 NDDFALMFIAPMDAEGVKLICRH-SYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYG 294 (519)
T ss_pred CCCeEEEEEeEcCCCceEEEeCC-chhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhh
Confidence 34456899999999999987432 11111 11125699999999999998332211 11111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CC
Q 016808 238 SGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-----KV 312 (382)
Q Consensus 238 ~~~~~~~~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~-----~~ 312 (382)
.+...+....+...++.++-.+-.+...+. -..+.++++||.+|+++....|.+++++..+....... .|
T Consensus 295 ~~~~~~~~q~~~r~~~k~dfl~G~a~~~ae-----~~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P 369 (519)
T TIGR02310 295 GFARLFPMQACTRLAVKLDFITGLLHKALQ-----CTGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLP 369 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEee
Confidence 111111111111222222222222222222 12466899999999999999999999999988776654 25
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 016808 313 DPKDCAGVILCAAERATQVTLQAIQCLGG 341 (382)
Q Consensus 313 ~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg 341 (382)
....+..+|.+..+...++.+.+.+++||
T Consensus 370 ~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 370 SAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred CHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 66778899999999999999999976654
No 49
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.55 E-value=1.4e-14 Score=96.19 Aligned_cols=52 Identities=42% Similarity=0.763 Sum_probs=47.2
Q ss_pred EEEecCCCCCCCcCCceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeC
Q 016808 123 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 174 (382)
Q Consensus 123 ~~~~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~ 174 (382)
|+++|||++|+|+..+.++++++++||+|||.|.||++++.||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 50
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=99.02 E-value=2.1e-09 Score=95.29 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=79.1
Q ss_pred HHHHhhhhhhhcCCceeEEEecCCCCC-C-Cc--C---CceeEEEEeCCeEEEEeEEEeecCCCCCcEEEEEEEeC-CCC
Q 016808 106 AQKDKYLPKLISGEHVGALAMSEPNAG-S-DV--V---GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD-IKA 177 (382)
Q Consensus 106 ~~~~~~l~~l~~g~~~~~~~~te~~~g-s-d~--~---~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~-~~~ 177 (382)
+-...|+..+.+.+...+.+++.|... | .+ . ..--..+++++|++|+|.|...|+++.+|.++|+-... ...
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 446788889999999999999998732 1 11 1 12223466789999999999999999999999986543 223
Q ss_pred CCCCeEEEEEeCCCCCeeeccccccccCCCC------------CeeeEEecceeeCCCCcc
Q 016808 178 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGS------------DTCELVFENCFVPNENVL 226 (382)
Q Consensus 178 ~~~~~~~flVp~~~~gv~~~~~~~~~G~~~~------------~~~~v~f~~v~Vp~~~vl 226 (382)
+..-...|.||.++||+++.........+.+ .-+-|.||||+||+++|+
T Consensus 203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 4455689999999999998755433222211 126699999999999886
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=96.82 E-value=0.027 Score=48.74 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=59.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecc
Q 016808 275 PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-----KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVN 346 (382)
Q Consensus 275 ~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~ 346 (382)
.+.++|+||.+|+++....|.+++++..+....... .|+......+|.+..+...++++.+.+++||.-.+-
T Consensus 43 G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~~ 119 (205)
T PF03241_consen 43 GIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLITL 119 (205)
T ss_dssp TGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC-
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Confidence 467899999999999999999999999888776653 266778889999999999999999999998866553
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=91.83 E-value=2.7 Score=41.84 Aligned_cols=79 Identities=8% Similarity=-0.011 Sum_probs=64.6
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-hhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchH
Q 016808 272 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD-PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 350 (382)
Q Consensus 272 ~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 350 (382)
+|+.|.+.|.+..+|+++.+.+++|-+.+.++...+..+.+. ..+..++..|+.+...++-..+-++... ++..+..+
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~~~~~ 507 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTADDSY 507 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchHHH
Confidence 567899999999999999999999999999999888887544 4556799999999999998888888876 44443333
Q ss_pred H
Q 016808 351 G 351 (382)
Q Consensus 351 ~ 351 (382)
.
T Consensus 508 ~ 508 (520)
T PTZ00457 508 K 508 (520)
T ss_pred H
Confidence 3
No 53
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=85.30 E-value=21 Score=35.58 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=62.4
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ChhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 016808 271 QFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPKDCAGVILCAAERATQVTLQAIQCLGG 341 (382)
Q Consensus 271 ~~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg 341 (382)
.+|+.|.+.|.+.++|++....+++|.+.+.++.+.+..+.+ .+.+...+.+++++...++...+-++.++
T Consensus 532 k~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 532 KHGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 357889999999999999999999999999999999998854 57788899999999988888888777666
No 54
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=84.28 E-value=1 Score=35.53 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=27.8
Q ss_pred HhhhhhHHHHHHHhcCCHHHHHhhhhhhhcCCc
Q 016808 88 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 120 (382)
Q Consensus 88 ~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~ 120 (382)
+..|..+....|...||++|+++|+|...+.+.
T Consensus 92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 347887899999999999999999999887764
No 55
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=55.44 E-value=2.8e+02 Score=29.42 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=66.4
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhcCceecccchHH
Q 016808 272 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATG 351 (382)
Q Consensus 272 ~g~~i~~~~~v~~~la~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~ 351 (382)
.|..+...+.+..||+|+.+.++++-+.+.+.. +++.+. .+..++..++.+...++-+..-.+..-.. .-++.
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~n~p---~~~~~ 631 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPE-ADLPLVHWAVQDALYQAEQALDGLLRNFP---NRVVA 631 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHH
Confidence 456788999999999999999999999876666 444332 22456666666665555554445443322 22244
Q ss_pred HHHHhh--ccCcccCChHHHHHHHHHHHHHh
Q 016808 352 RLLRDA--KLYEIGAGTSEIRRMIIGRALLK 380 (382)
Q Consensus 352 r~~rda--~~~~~~~g~~~~~~~~l~~~l~~ 380 (382)
.++|-+ .....+.++++.+-..+++.++.
T Consensus 632 ~~~~~~~~p~g~~~~~p~d~~~~~~~~~~~~ 662 (777)
T PRK09463 632 GLLRVLVFPLGRRYRAPSDKLDHQVAKLLQT 662 (777)
T ss_pred HHHHHeeeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 555543 22334566788888888888775
No 56
>PF05284 DUF736: Protein of unknown function (DUF736); InterPro: IPR007948 This family consists of several uncharacterised bacterial proteins of unknown function.
Probab=45.44 E-value=69 Score=24.45 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=45.6
Q ss_pred EeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCC-CCCeeeEEecceee
Q 016808 152 NGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR-GSDTCELVFENCFV 220 (382)
Q Consensus 152 ~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~~gv~~~~~~~~~G~~-~~~~~~v~f~~v~V 220 (382)
.|.-. |-.-.++..+|.+...++++.+.+.+++-+.+ ++++..-|...+-+ +...-+|.+||=..
T Consensus 15 ~G~I~--TL~~~~~i~lvP~~~~~~e~aPdyRV~~~~~~--~~EvGaaW~~~~~~tg~~Ylsl~LddP~f 80 (107)
T PF05284_consen 15 TGRIR--TLTLDAKIRLVPNESKDSENAPDYRVYAGPRG--GVEVGAAWKKTSKDTGRDYLSLKLDDPSF 80 (107)
T ss_pred EEEEE--EeEecccEEEEeCCCCCCCCCCCEEEEecCCC--CCceeeeehhhccccCCceEEEEEcCCCC
Confidence 45543 33445566666665544556667777666433 89999999999998 88899999998544
No 57
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=43.91 E-value=93 Score=27.04 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=50.5
Q ss_pred ccccCCcH-HHHHHHHH-cCCCCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHHhhhhhHHHHHHHhcCCHHHHHh
Q 016808 33 DDTQLQDV-NLWKLMGN-FNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK 110 (382)
Q Consensus 33 ~d~~~~~~-~~~~~l~~-~Gl~~~~vP~~~GG~~~~~~~~~~~~~~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~ 110 (382)
+++..+.. ++++.+|. +|-+.+-+|.+. -++.++-.+++.|=. |+ .+|+..|.++.|++
T Consensus 95 ~EEetTISAKvm~~ikavLgaTKiDLPVDI----NDPYDlGLLLRhLRH-----------HS----NLLAnIgdP~Vreq 155 (238)
T PF02084_consen 95 DEEETTISAKVMEDIKAVLGATKIDLPVDI----NDPYDLGLLLRHLRH-----------HS----NLLANIGDPEVREQ 155 (238)
T ss_pred cCCCccccHHHHHHHHHHhccccccccccc----CChhhHHHHHHHHHH-----------HH----HHHhhcCCHHHHHH
Confidence 34556666 88988886 999999999863 477787777777642 33 67788889999988
Q ss_pred hhhhhhcC
Q 016808 111 YLPKLISG 118 (382)
Q Consensus 111 ~l~~l~~g 118 (382)
.|..+.+-
T Consensus 156 VLsAMqEe 163 (238)
T PF02084_consen 156 VLSAMQEE 163 (238)
T ss_pred HHHHHhhh
Confidence 88877654
No 58
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=34.09 E-value=1e+02 Score=24.97 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=25.5
Q ss_pred EEeCCeEEEEeEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCC-----CCeeecccc
Q 016808 143 DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-----PGFSTAQKL 200 (382)
Q Consensus 143 ~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~-----~gv~~~~~~ 200 (382)
..+.+.|.|+|+|...-- + .+++...+.+.++|... |.|++....
T Consensus 65 ~a~~~~WlV~Grrrg~f~--------~-----~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 65 VADSDNWLVSGRRRGVFS--------L-----SDGSEHEIPLTLIPLRAGYLPLPKVEIRPYD 114 (147)
T ss_pred ecCCCcEEEeccCcceEE--------e-----cCCCeEEEEEEEEecccceecCCEEEEEecc
Confidence 345677999999862211 1 11123346677777643 667775433
No 59
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=31.08 E-value=1.1e+02 Score=25.35 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=30.1
Q ss_pred eEEEeecCCCCCcEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeecc-ccc
Q 016808 153 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQ-KLD 201 (382)
Q Consensus 153 G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~flVp~~~~gv~~~~-~~~ 201 (382)
+.-.|++.....+|++|.|..++.++...+..|+++.+ .||.+.. .|+
T Consensus 80 tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~g-qgV~~~~GvWH 128 (165)
T PF04115_consen 80 TSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGG-QGVNYHRGVWH 128 (165)
T ss_dssp B-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS--EEEE-TT-EE
T ss_pred eeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCC-EEEEECCCcee
Confidence 77788887665558888888665556678999999876 4777754 354
Done!