Citrus Sinensis ID: 016809

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccccEEEEEEccccccccccccccccccccEEEccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHccEEEEcccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
HHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mekvgkegvitihdgktlYNELEVVegmkldrgyispyfitnqknqkceledpliLVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCaikapgfgenrkaNMQDLAVLTGGDLITEELGMDLEKVNLDMLGTckkvtiskddtvildgagdkkSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKiggaseaevgekKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNAlktpvhtiaaNAGVEGAVVVGKLLeqdntdlgydaakgEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVElpkeekeapggmggmggmggmdy
Flexible Loop (DISEMBL)
mekvgkegvitihdgktlynELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIkapgfgenrkanMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCkkvtiskddtvildgagdkksiEERCEQIRSaienstsdydkEKLQERLAKLSGGVAVLKiggaseaevgekkdRVTDALNATKaaveegivpgGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDaasvsslmttteaivvelpkeekeapggmggmggmggmdy
Low Complexity Region (SEG)
MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVallyaakeleklSTANFDQKIGVQIIQNALKTPVHTIaanagvegavvvgKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPggmggmggmggmDY
Disordered region (IsUnstruct)
*******GVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDG*************************************SGGVAVLKIG****************ALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE***********************
Disordered Region (DISOPRED)
*EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV************************
Disordered Region (DISEMBL)
MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY
Disordered Region (DISPRO)
****GKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDxxxxxxxxxxxxxxxxxxxxxYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q05046	575	Chaperonin CPN60-2, mitoc	N/A	no	0.963	0.64	0.923	0.0
Q43298	576	Chaperonin CPN60-2, mitoc	N/A	no	0.989	0.656	0.876	0.0
Q05045	575	Chaperonin CPN60-1, mitoc	N/A	no	0.963	0.64	0.899	0.0
P29197	577	Chaperonin CPN60, mitocho	yes	no	0.960	0.636	0.893	0.0
P29185	577	Chaperonin CPN60-1, mitoc	N/A	no	0.952	0.630	0.895	0.0
Q8L7B5	585	Chaperonin CPN60-like 1,	no	no	0.963	0.629	0.853	0.0
P35480	587	Chaperonin CPN60, mitocho	N/A	no	0.965	0.628	0.845	0.0
Q93ZM7	572	Chaperonin CPN60-like 2,	no	no	0.984	0.657	0.706	1e-153
Q2RY28	543	60 kDa chaperonin 1 OS=Rh	yes	no	0.989	0.696	0.617	1e-135
Q2NBL8	539	60 kDa chaperonin 1 OS=Er	yes	no	0.979	0.693	0.604	1e-132

>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/368 (92%), Positives = 360/368 (97%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DGKTL+NELEVVEGMKLDRGYISPYFITNQKNQKCEL+DPLIL+HEK
Sbjct: 197 MEKVGKEGVITISDGKTLFNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEK 256

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS++ +VV+VLELALKRQRPLLIV+EDVES+ALATLILNKLRAGIKVCAIKAPGFGENR
Sbjct: 257 KISSINSVVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENR 316

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA + DLAVLTGG LITEELGM+LEKV+LDMLG+CKK+TISKDDTVILDGAGDKKSIEER
Sbjct: 317 KAGLHDLAVLTGGQLITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKSIEER 376

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           CEQIRSAIE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 377 CEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 436

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KLSTANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 437 AVEEGIVPGGGVALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 496

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQDN DLGYDAAKGEYVDM+K+GIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL
Sbjct: 497 VGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 556

Query: 361 PKEEKEAP 368
           PK+EKE P
Sbjct: 557 PKDEKEVP 564

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Cucurbita maxima (taxid: 3661)

>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/382 (87%), Positives = 361/382 (94%), Gaps = 4/382 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DG TLYNELEVVEGMKLDRGYISPYFITN K QKCELEDPLIL+H+K
Sbjct: 199 MEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFITNSKAQKCELEDPLILIHDK 258

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K++N+ AVV+VLE+ALK+QRPLLIVAEDVESEAL TLI+NKLRAGIKVCA+KAPGFGENR
Sbjct: 259 KVTNMHAVVKVLEMALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENR 318

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KAN+QDLA+LTGG++ITEELGM+LE V   MLG+CKKVT+SKDDTVILDGAGDKKSIEER
Sbjct: 319 KANLQDLAILTGGEVITEELGMNLENVEPHMLGSCKKVTVSKDDTVILDGAGDKKSIEER 378

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
            +QIRSA+ENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 379 ADQIRSAVENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 438

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 439 AVEEGIVPGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 498

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQ NTDLGYDAAK EYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTE+I+VE+
Sbjct: 499 VGKLLEQGNTDLGYDAAKDEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEI 558

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PKEE  AP     MGGMGGMDY
Sbjct: 559 PKEEAPAP----AMGGMGGMDY 576

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Zea mays (taxid: 4577)

>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/368 (89%), Positives = 356/368 (96%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DGKT+ NELEVVEGMKLDRGYISPYFITNQKNQKCEL+DPLI+++EK
Sbjct: 197 MEKVGKEGVITISDGKTMDNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLIIIYEK 256

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS++ AVV+VLELALK+QRPLLIV+EDVESEALATLILNKLRAGIKVCAIKAPGFGENR
Sbjct: 257 KISSINAVVKVLELALKKQRPLLIVSEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 316

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QDLAVLTGG +ITEELGM+LEKV+LDMLG+CKK+TISKDDTVILDGAGDKK+IEER
Sbjct: 317 KAGLQDLAVLTGGQVITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKAIEER 376

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           C+QIRS IE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 377 CDQIRSGIEASTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 436

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 437 AVEEGIVPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 496

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQD+ DLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTE +VVEL
Sbjct: 497 VGKLLEQDDPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEVVVVEL 556

Query: 361 PKEEKEAP 368
           PK+E E P
Sbjct: 557 PKDENEVP 564

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Cucurbita maxima (taxid: 3661)

>sp|P29197|CH60A_ARATH Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/367 (89%), Positives = 356/367 (97%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DGKTL+NELEVVEGMKLDRGY SPYFITNQK QKCEL+DPLIL+HEK
Sbjct: 196 MEKVGKEGVITIQDGKTLFNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEK 255

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS++ ++V+VLELALKRQRPLLIV+EDVES+ALATLILNKLRAGIKVCAIKAPGFGENR
Sbjct: 256 KISSINSIVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENR 315

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KAN+QDLA LTGG++IT+ELGM+LEKV+L MLGTCKKVT+SKDDTVILDGAGDKK IEER
Sbjct: 316 KANLQDLAALTGGEVITDELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEER 375

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           CEQIRSAIE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 376 CEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 435

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGI+PGGGVALLYAA+ELEKL TANFDQKIGVQIIQNALKTPV+TIA+NAGVEGAV+
Sbjct: 436 AVEEGILPGGGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVI 495

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQDN DLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSL+TTTEA+VV+L
Sbjct: 496 VGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVVDL 555

Query: 361 PKEEKEA 367
           PK+E E+
Sbjct: 556 PKDESES 562

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/364 (89%), Positives = 351/364 (96%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DG TLYNELEVVEGMKLDRGYISPYFITN K QKCELEDPLIL+H+K
Sbjct: 199 MEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFITNSKTQKCELEDPLILIHDK 258

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K++N+ AVV+VLE+ALK+Q+PLLIVAEDVESEAL TLI+NKLRAGIKVCA+KAPGFGENR
Sbjct: 259 KVTNMHAVVKVLEMALKKQKPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENR 318

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KAN+QDLA+LTGG++ITEELGM+LE     MLGTCKKVT+SKDDTVILDGAGDKKSIEER
Sbjct: 319 KANLQDLAILTGGEVITEELGMNLENFEPHMLGTCKKVTVSKDDTVILDGAGDKKSIEER 378

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
            EQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 379 AEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 438

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 439 AVEEGIVPGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 498

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQ+NTDLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTE+I+VE+
Sbjct: 499 VGKLLEQENTDLGYDAAKGEYVDMVKTGIIDPLKVIRTALVDAASVSSLMTTTESIIVEI 558

Query: 361 PKEE 364
           PKEE
Sbjct: 559 PKEE 562

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Zea mays (taxid: 4577)

>sp|Q8L7B5|CH60B_ARATH Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/368 (85%), Positives = 344/368 (93%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           ME VGKEGVITI DGKTL+NELEVVEGMK+DRGYISPYFITN K QKCELEDPLIL+HEK
Sbjct: 197 METVGKEGVITIQDGKTLFNELEVVEGMKIDRGYISPYFITNPKTQKCELEDPLILIHEK 256

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+ A+V+VLELALK+QRPLLIVAEDVES+ALATLILNKLRA IKVCA+KAPGFGENR
Sbjct: 257 KISNINAMVKVLELALKKQRPLLIVAEDVESDALATLILNKLRANIKVCAVKAPGFGENR 316

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KAN+ DLA LTG  +ITEELGM+L+ ++L M G CKKVT+SKDDTV+LDGAGDK++I ER
Sbjct: 317 KANLHDLAALTGAQVITEELGMNLDNIDLSMFGNCKKVTVSKDDTVVLDGAGDKQAIGER 376

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           CEQIRS +E STSDYDKEKLQERLAKLSGGVAVLKIGGASE EV EKKDRVTDALNATKA
Sbjct: 377 CEQIRSMVEASTSDYDKEKLQERLAKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKA 436

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KELEKLSTANFDQKIGVQIIQNALKTPV+TIA+NAGVEGAVV
Sbjct: 437 AVEEGIVPGGGVALLYASKELEKLSTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVV 496

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQDN DLGYDAAKGEYVDM+K+GIIDPLKVIRTALVDAASVSSL+TTTEA+V E+
Sbjct: 497 VGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVTEI 556

Query: 361 PKEEKEAP 368
           P +E  +P
Sbjct: 557 PTKEVASP 564

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1

 Score =  633 bits (1632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/370 (84%), Positives = 342/370 (92%), Gaps = 1/370 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           ME VGKEGVITI DGKTL+NELEVVEGMK+DRGYISPYFITNQKNQKCELEDPLIL+HEK
Sbjct: 199 MESVGKEGVITIQDGKTLFNELEVVEGMKIDRGYISPYFITNQKNQKCELEDPLILIHEK 258

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISNL ++V+VLELALK QR LLIVA D+ES+ALA LILNKLRAGIKVCA+KAPGFGENR
Sbjct: 259 KISNLNSMVKVLELALKSQRSLLIVAADLESDALAVLILNKLRAGIKVCAVKAPGFGENR 318

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILD-GAGDKKSIEE 179
           KANM DLA LTG  +ITEELGM+LEK++L MLG CKK+T+SKDDTV L  GAGDKK+I E
Sbjct: 319 KANMHDLATLTGAQVITEELGMNLEKIDLSMLGNCKKITVSKDDTVFLGWGAGDKKAIGE 378

Query: 180 RCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239
           RCEQIRS +E S SDYDKEKLQERLAKLSGGVAVLKIGGASE+EVGEKKDRVTDALNATK
Sbjct: 379 RCEQIRSMVEASESDYDKEKLQERLAKLSGGVAVLKIGGASESEVGEKKDRVTDALNATK 438

Query: 240 AAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 299
           AAVEEGIVPGGGVALLYA+KEL+KLSTANFD KIGVQIIQNALKTPV+TIA+NAGVEGAV
Sbjct: 439 AAVEEGIVPGGGVALLYASKELDKLSTANFDHKIGVQIIQNALKTPVYTIASNAGVEGAV 498

Query: 300 VVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359
           +VGKLLE DN DLGYDAAKGEYVDMVKSGIIDP+KVIRTALVDAASVSSL+TTTEA+V E
Sbjct: 499 IVGKLLESDNPDLGYDAAKGEYVDMVKSGIIDPVKVIRTALVDAASVSSLLTTTEAVVTE 558

Query: 360 LPKEEKEAPG 369
           +P +E  +P 
Sbjct: 559 IPTKEDASPA 568

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Brassica napus (taxid: 3708)

>sp|Q93ZM7|CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2

 Score =  540 bits (1391), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 267/378 (70%), Positives = 322/378 (85%), Gaps = 2/378 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVIT+ DG TL NELEVVEGMKL RGYISPYFIT++K QKCELE+P+IL+HEK
Sbjct: 196 MEKVGKEGVITVADGNTLDNELEVVEGMKLARGYISPYFITDEKTQKCELENPIILIHEK 255

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS++ ++++VLE A+K  RPLLIVAEDVES+ALA LILNK   G+KVCAIKAPGFG+NR
Sbjct: 256 KISDINSLLKVLEAAVKSSRPLLIVAEDVESDALAMLILNKHHGGLKVCAIKAPGFGDNR 315

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA++ DLAVLTG ++I+EE G+ LEK+  ++LGT KKVT+++DDT+IL G GDKK IEER
Sbjct: 316 KASLDDLAVLTGAEVISEERGLSLEKIRPELLGTAKKVTVTRDDTIILHGGGDKKLIEER 375

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           CE++RSA E STS +D+EK QERL+KLSGGVAV K+GGASE+EVGE+KDRVTDALNAT+A
Sbjct: 376 CEELRSANEKSTSTFDQEKTQERLSKLSGGVAVFKVGGASESEVGERKDRVTDALNATRA 435

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGI+PGGGVALLYA K L+ L T N DQ+ GVQI+QNALK P  TIAANAG +G++V
Sbjct: 436 AVEEGIIPGGGVALLYATKALDNLQTENEDQRRGVQIVQNALKAPAFTIAANAGYDGSLV 495

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQD+ + G+DAAKG+YVDMVK+GIIDP+KVIRTAL DAASVS L+TTTEA V  L
Sbjct: 496 VGKLLEQDDCNFGFDAAKGKYVDMVKAGIIDPVKVIRTALTDAASVSLLLTTTEASV--L 553

Query: 361 PKEEKEAPGGMGGMGGMG 378
            K ++  P  +  M  MG
Sbjct: 554 VKADENTPNHVPDMASMG 571

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2RY28|CH601_RHORT 60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1

 Score =  483 bits (1243), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/382 (61%), Positives = 306/382 (80%), Gaps = 4/382 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVG EGVIT+ + K L  EL+VVEGM+ DRGY+SPYF+TN +    +LE+P IL+HEK
Sbjct: 166 MDKVGHEGVITVEEAKGLDTELDVVEGMQFDRGYLSPYFVTNAEKMVADLENPYILIHEK 225

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+S L  ++ VLE  ++  RPLLI+AEDVE EALATL++N+LR G+KV ++KAPGFG+ R
Sbjct: 226 KLSGLQPLLPVLEAVVQSGRPLLIIAEDVEGEALATLVVNRLRGGLKVASVKAPGFGDRR 285

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA ++D+A+LTGG +I+E+LG+ LE V LDMLGT K VTI+KD+T I+DGAG K  I+ R
Sbjct: 286 KAMLEDIAILTGGQVISEDLGIKLETVTLDMLGTAKTVTITKDNTTIVDGAGVKADIDAR 345

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           C QIR+ IE++TSDYD+EKLQERLAKLSGGVAV+++GGASE EV EKKDRV DA++AT+A
Sbjct: 346 CAQIRATIEDTTSDYDREKLQERLAKLSGGVAVIRVGGASEVEVKEKKDRVDDAMHATRA 405

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGI+ GGGVALL+AAK L+ LS AN DQK+G++I++ AL+ PV  IA NAGV+GAVV
Sbjct: 406 AVEEGIIAGGGVALLHAAKALDALSPANADQKVGIEIVRRALQAPVRQIAENAGVDGAVV 465

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
            GKLLE  + D GY+A  G Y ++VK G+IDP KV+RTAL  AASV+SL+ TTEA+V E+
Sbjct: 466 AGKLLESSDADFGYNAQTGVYENLVKVGVIDPTKVVRTALQGAASVASLLITTEAMVAEI 525

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           P+++   P G    GGMG MD+
Sbjct: 526 PEKKPALPAG----GGMGDMDF 543

Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

>sp|Q2NBL8|CH601_ERYLH 60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/382 (60%), Positives = 300/382 (78%), Gaps = 8/382 (2%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVG EGVIT+ + K+L  ELE VEGM+ DRGY+SPYF+TN +  K ELEDP IL+HEK
Sbjct: 166 MDKVGNEGVITVEEAKSLETELETVEGMQFDRGYLSPYFVTNTEKLKVELEDPYILIHEK 225

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+SNL A++ +LE  ++  +PLLI+AEDVE EALATL++NKLR G+KV A+KAPGFG+ R
Sbjct: 226 KLSNLQALIPLLEQVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRR 285

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA ++D+A+LT G++++EELG  LE V + MLG  KKV I KD+T I+DGAG+K  I+ R
Sbjct: 286 KAMLEDVAILTAGNVVSEELGTKLENVTIGMLGRAKKVIIDKDNTTIVDGAGNKADIDAR 345

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR+ IE +TSDYD+EKLQER+AKL+GGVAV+++GGA+E EV E+KDRV DAL+AT+A
Sbjct: 346 VSQIRAQIETTTSDYDREKLQERVAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRA 405

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGI+PGGG+ALL A K L+ L  AN DQ+ G+ I++ AL+ P   IA NAG +GA +
Sbjct: 406 AVEEGILPGGGIALLRALKSLDGLKAANDDQQSGIDIVRRALRAPARQIAENAGEDGAYI 465

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLE D+ + G++AA GEY D+VKSG+IDP KV+RTAL DAASV+SL+ TTEA+V EL
Sbjct: 466 VGKLLEGDDYNHGFNAATGEYEDLVKSGVIDPAKVVRTALQDAASVASLLITTEALVAEL 525

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PKE+  AP        M  MD+
Sbjct: 526 PKEDTPAP--------MPAMDF 539

Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
357442731	574	Chaperonin CPN60-like protein [Medicago	0.989	0.658	0.897	0.0
110289207	634	Chaperonin CPN60-1, mitochondrial precur	0.989	0.596	0.895	0.0
115482382	574	Os10g0462900 [Oryza sativa Japonica Grou	0.989	0.658	0.895	0.0
461736	575	RecName: Full=Chaperonin CPN60-2, mitoch	0.963	0.64	0.923	0.0
255554262	574	chaperonin-60kD, ch60, putative [Ricinus	0.989	0.658	0.895	0.0
449458874	575	PREDICTED: chaperonin CPN60-2, mitochond	0.963	0.64	0.915	0.0
162460375	576	chaperonin CPN60-2, mitochondrial precur	0.989	0.656	0.876	0.0
22250	576	mitochondrial chaperonin-60 [Zea mays]	0.989	0.656	0.871	0.0
225433375	575	PREDICTED: chaperonin CPN60-2, mitochond	0.965	0.641	0.910	0.0
356576411	575	PREDICTED: chaperonin CPN60-2, mitochond	0.963	0.64	0.899	0.0

>gi|357442731|ref|XP_003591643.1| Chaperonin CPN60-like protein [Medicago truncatula] gi|92882357|gb|ABE86688.1| GroEL-like chaperone, ATPase [Medicago truncatula] gi|355480691|gb|AES61894.1| Chaperonin CPN60-like protein [Medicago truncatula]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/382 (89%), Positives = 364/382 (95%), Gaps = 4/382 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DGKTL NELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLI++HEK
Sbjct: 197 MEKVGKEGVITIADGKTLQNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLIIIHEK 256

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+ ++V+VLELALK+QRPLLIVAEDVES+ALATLILNKLRAGIKVCAIKAPGFGENR
Sbjct: 257 KISNINSIVKVLELALKKQRPLLIVAEDVESDALATLILNKLRAGIKVCAIKAPGFGENR 316

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           K+ +QDLAVLTGG LITEELGM+LEKV+L+M G+CKK+TISKDDTVILDGAGDKKSIEER
Sbjct: 317 KSGLQDLAVLTGGQLITEELGMNLEKVDLEMFGSCKKITISKDDTVILDGAGDKKSIEER 376

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           CEQIRSA+ENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 377 CEQIRSAVENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 436

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+ EL KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 437 AVEEGIVPGGGVALLYASNELSKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 496

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQDN DLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEA+V EL
Sbjct: 497 VGKLLEQDNPDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAVVSEL 556

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PKE+K+ P     M GMGGMDY
Sbjct: 557 PKEDKDTP----AMPGMGGMDY 574

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110289207|gb|AAP54159.2| Chaperonin CPN60-1, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/382 (89%), Positives = 364/382 (95%), Gaps = 4/382 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DG TLYNELEVVEGMKLDRGYISPYF+TN K QKCEL+DPLIL+H+K
Sbjct: 257 MEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFVTNPKTQKCELDDPLILIHDK 316

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+SNL AVV+VLELALK+QRPLLIVAEDVESEAL TLI+NKLRAGIKVCA+KAPGFGENR
Sbjct: 317 KVSNLHAVVKVLELALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENR 376

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KAN+QDLA+LTGG++ITEELGM+LEK    MLGTCKKVT+SKDDTVILDGAGDKKSIEER
Sbjct: 377 KANLQDLAILTGGEVITEELGMNLEKFEPQMLGTCKKVTVSKDDTVILDGAGDKKSIEER 436

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
            EQIRSAIE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 437 AEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 496

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 497 AVEEGIVPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 556

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQDNTDLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTE+I+VE+
Sbjct: 557 VGKLLEQDNTDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEI 616

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PKEEKEAP     MGGMGGMDY
Sbjct: 617 PKEEKEAP----AMGGMGGMDY 634

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115482382|ref|NP_001064784.1| Os10g0462900 [Oryza sativa Japonica Group] gi|22758324|gb|AAN05528.1| mitochondrial chaperonin-60 [Oryza sativa Japonica Group] gi|113639393|dbj|BAF26698.1| Os10g0462900 [Oryza sativa Japonica Group] gi|218184691|gb|EEC67118.1| hypothetical protein OsI_33923 [Oryza sativa Indica Group] gi|222612963|gb|EEE51095.1| hypothetical protein OsJ_31804 [Oryza sativa Japonica Group] gi|313575773|gb|ADR66966.1| 60 kDa chaperonin [Oryza sativa Japonica Group]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/382 (89%), Positives = 364/382 (95%), Gaps = 4/382 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DG TLYNELEVVEGMKLDRGYISPYF+TN K QKCEL+DPLIL+H+K
Sbjct: 197 MEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFVTNPKTQKCELDDPLILIHDK 256

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+SNL AVV+VLELALK+QRPLLIVAEDVESEAL TLI+NKLRAGIKVCA+KAPGFGENR
Sbjct: 257 KVSNLHAVVKVLELALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENR 316

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KAN+QDLA+LTGG++ITEELGM+LEK    MLGTCKKVT+SKDDTVILDGAGDKKSIEER
Sbjct: 317 KANLQDLAILTGGEVITEELGMNLEKFEPQMLGTCKKVTVSKDDTVILDGAGDKKSIEER 376

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
            EQIRSAIE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 377 AEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 436

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 437 AVEEGIVPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 496

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQDNTDLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTE+I+VE+
Sbjct: 497 VGKLLEQDNTDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEI 556

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PKEEKEAP     MGGMGGMDY
Sbjct: 557 PKEEKEAP----AMGGMGGMDY 574

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|461736|sp|Q05046.1|CH62_CUCMA RecName: Full=Chaperonin CPN60-2, mitochondrial; AltName: Full=HSP60-2; Flags: Precursor gi|478786|pir||S29316 chaperonin 60 - cucurbit gi|12546|emb|CAA50218.1| chaperonin 60 [Cucurbita cv. Kurokawa Amakuri]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/368 (92%), Positives = 360/368 (97%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DGKTL+NELEVVEGMKLDRGYISPYFITNQKNQKCEL+DPLIL+HEK
Sbjct: 197 MEKVGKEGVITISDGKTLFNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEK 256

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS++ +VV+VLELALKRQRPLLIV+EDVES+ALATLILNKLRAGIKVCAIKAPGFGENR
Sbjct: 257 KISSINSVVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENR 316

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA + DLAVLTGG LITEELGM+LEKV+LDMLG+CKK+TISKDDTVILDGAGDKKSIEER
Sbjct: 317 KAGLHDLAVLTGGQLITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKSIEER 376

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           CEQIRSAIE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 377 CEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 436

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KLSTANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 437 AVEEGIVPGGGVALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 496

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQDN DLGYDAAKGEYVDM+K+GIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL
Sbjct: 497 VGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 556

Query: 361 PKEEKEAP 368
           PK+EKE P
Sbjct: 557 PKDEKEVP 564

Source: Cucurbita cv. Kurokawa Amakuri

Species: Cucurbita hybrid cultivar

Genus: Cucurbita

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554262|ref|XP_002518171.1| chaperonin-60kD, ch60, putative [Ricinus communis] gi|223542767|gb|EEF44304.1| chaperonin-60kD, ch60, putative [Ricinus communis]

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/382 (89%), Positives = 361/382 (94%), Gaps = 4/382 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCEL+DPLIL+HEK
Sbjct: 197 MEKVGKEGVITIQDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEK 256

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS++ AVV+VLELALKRQRPLLI+AEDVESEALATLILNKLRAGIKVCAIKAPGFGENR
Sbjct: 257 KISSINAVVKVLELALKRQRPLLIIAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 316

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QDLAVLTGG +ITEELG++LEKV+LDMLG+CKKVT+SKDDTV+LDGAG+KK IEER
Sbjct: 317 KAGLQDLAVLTGGQVITEELGLNLEKVDLDMLGSCKKVTVSKDDTVVLDGAGEKKDIEER 376

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           CEQIRS IE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 377 CEQIRSTIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 436

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA KELEKL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 437 AVEEGIVPGGGVALLYATKELEKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 496

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQDN DLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTEA+V EL
Sbjct: 497 VGKLLEQDNYDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAVVSEL 556

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PK+E  AP    GM    GMDY
Sbjct: 557 PKDESAAPAMPPGM----GMDY 574

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458874|ref|XP_004147171.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like [Cucumis sativus] gi|449498579|ref|XP_004160576.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like [Cucumis sativus]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/368 (91%), Positives = 360/368 (97%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLIL+HEK
Sbjct: 197 MEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILIHEK 256

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS++ AVV+VLELALKRQRPLLI++EDVES+ALATLILNKLRAGIKVCAIKAPGFGENR
Sbjct: 257 KISSINAVVKVLELALKRQRPLLIISEDVESDALATLILNKLRAGIKVCAIKAPGFGENR 316

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QDLAVLTGG++ITEELGM+LEKV+L+MLG+CKK+TISKDDTVILDG+GDKK+IEER
Sbjct: 317 KAGLQDLAVLTGGEVITEELGMNLEKVDLEMLGSCKKITISKDDTVILDGSGDKKAIEER 376

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           CEQIR+ IE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 377 CEQIRAGIEASTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 436

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 437 AVEEGIVPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 496

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQDN DLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL
Sbjct: 497 VGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 556

Query: 361 PKEEKEAP 368
           PK+EKE P
Sbjct: 557 PKDEKEVP 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162460375|ref|NP_001105690.1| chaperonin CPN60-2, mitochondrial precursor [Zea mays] gi|2493646|sp|Q43298.1|CH62_MAIZE RecName: Full=Chaperonin CPN60-2, mitochondrial; AltName: Full=HSP60-2; Flags: Precursor gi|309559|gb|AAA33451.1| chaperonin 60 [Zea mays] gi|309561|gb|AAA33452.1| mitochondrial chaperonin 60 [Zea mays] gi|414871207|tpg|DAA49764.1| TPA: putative TCP-1/cpn60 chaperonin family protein [Zea mays]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/382 (87%), Positives = 361/382 (94%), Gaps = 4/382 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DG TLYNELEVVEGMKLDRGYISPYFITN K QKCELEDPLIL+H+K
Sbjct: 199 MEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFITNSKAQKCELEDPLILIHDK 258

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K++N+ AVV+VLE+ALK+QRPLLIVAEDVESEAL TLI+NKLRAGIKVCA+KAPGFGENR
Sbjct: 259 KVTNMHAVVKVLEMALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENR 318

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KAN+QDLA+LTGG++ITEELGM+LE V   MLG+CKKVT+SKDDTVILDGAGDKKSIEER
Sbjct: 319 KANLQDLAILTGGEVITEELGMNLENVEPHMLGSCKKVTVSKDDTVILDGAGDKKSIEER 378

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
            +QIRSA+ENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 379 ADQIRSAVENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 438

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 439 AVEEGIVPGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 498

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQ NTDLGYDAAK EYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTE+I+VE+
Sbjct: 499 VGKLLEQGNTDLGYDAAKDEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEI 558

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PKEE  AP     MGGMGGMDY
Sbjct: 559 PKEEAPAP----AMGGMGGMDY 576

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22250|emb|CAA78101.1| mitochondrial chaperonin-60 [Zea mays]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/382 (87%), Positives = 360/382 (94%), Gaps = 4/382 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DG TLYNELEVVEGMKLDRGYISPYFITN K QKCE EDPLIL+H++
Sbjct: 199 MEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFITNSKAQKCEPEDPLILIHDR 258

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K++N+ AVV+VLE+ALK+QRPLLIVAEDVESEAL TLI+NKLRAGIKVCA+KAPGFGENR
Sbjct: 259 KVTNMHAVVKVLEMALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENR 318

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KAN+QDLA+LTGG++ITEELGM+LE V   MLG+CKKVT+SKDDTVILDGAGDKKSIEER
Sbjct: 319 KANLQDLAILTGGEVITEELGMNLENVEPHMLGSCKKVTVSKDDTVILDGAGDKKSIEER 378

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
            +QIRSA+ENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 379 ADQIRSAVENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 438

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 439 AVEEGIVPGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 498

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQ NTDLGYDAAK EYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTE+I+VE+
Sbjct: 499 VGKLLEQGNTDLGYDAAKDEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEI 558

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PKEE  AP     MGGMGGMDY
Sbjct: 559 PKEEAPAP----AMGGMGGMDY 576

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433375|ref|XP_002285608.1| PREDICTED: chaperonin CPN60-2, mitochondrial isoform 1 [Vitis vinifera] gi|297741894|emb|CBI33329.3| unnamed protein product [Vitis vinifera]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/369 (91%), Positives = 354/369 (95%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DGKTLYNELEVVEGMKLDRGYISPYFITNQK QKCELE+PL+L+HEK
Sbjct: 197 MEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKTQKCELENPLVLIHEK 256

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+ AVV+VLE+ALK QRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR
Sbjct: 257 KISNIHAVVKVLEMALKTQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 316

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QDLA LTGG+LITEELG++LEK  LDMLGTCKKVTISKDDTVILDGAGDKK+IEER
Sbjct: 317 KAALQDLATLTGGELITEELGLNLEKAELDMLGTCKKVTISKDDTVILDGAGDKKAIEER 376

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           CEQIRSAIE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEV EKKDRVTDALNATKA
Sbjct: 377 CEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVSEKKDRVTDALNATKA 436

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+KEL+KL T+NFDQKIGVQIIQNALKTPV TIA+NAGVEGAVV
Sbjct: 437 AVEEGIVPGGGVALLYASKELDKLPTSNFDQKIGVQIIQNALKTPVFTIASNAGVEGAVV 496

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQDN DLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTEA+VVEL
Sbjct: 497 VGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAVVVEL 556

Query: 361 PKEEKEAPG 369
           PK+EKE P 
Sbjct: 557 PKDEKEVPA 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576411|ref|XP_003556325.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like isoform 1 [Glycine max]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/368 (89%), Positives = 357/368 (97%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVITI DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLI++HEK
Sbjct: 197 MEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLIIIHEK 256

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS++ A+V+VLELALKRQR LLIVAEDVES+ALATLILNKLRAGIKVCAIKAPGFGENR
Sbjct: 257 KISSINAIVKVLELALKRQRSLLIVAEDVESDALATLILNKLRAGIKVCAIKAPGFGENR 316

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           K+ +QDLAVLTGG LITEELG++LEKV+LD+ G+CKK+TISKDDTVILDGAGDKK+IEER
Sbjct: 317 KSGLQDLAVLTGGQLITEELGLNLEKVDLDLFGSCKKITISKDDTVILDGAGDKKAIEER 376

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
           CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct: 377 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 436

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALLYA+ EL+KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVV
Sbjct: 437 AVEEGIVPGGGVALLYASSELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVV 496

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKLLEQ++ DLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTEA+V EL
Sbjct: 497 VGKLLEQNDPDLGYDAAKGEYVDMVKTGIIDPLKVIRTALVDAASVSSLMTTTEAVVSEL 556

Query: 361 PKEEKEAP 368
           PK++K+ P
Sbjct: 557 PKDDKDVP 564

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
TAIR|locus:2076081	577	HSP60 "heat shock protein 60"	1.0	0.662	0.806	1.6e-157
TAIR|locus:2046590	585	HSP60-2 "heat shock protein 60	0.963	0.629	0.790	2e-150
TAIR|locus:2087959	572	HSP60-3A "heat shock protein 6	0.958	0.639	0.671	8.7e-127
UNIPROTKB|G4NAR5	589	MGG_03165 "Heat shock protein	0.960	0.623	0.566	1.9e-108
DICTYBASE|DDB_G0288181	556	hspA "chaperonin 60" [Dictyost	0.947	0.651	0.561	6.3e-108
GENEDB_PFALCIPARUM|PF10_0153	580	PF10_0153 "hsp60" [Plasmodium	0.958	0.631	0.550	2.7e-107
UNIPROTKB|Q8IJN9	580	PF10_0153 "Heat shock protein	0.958	0.631	0.550	2.7e-107
ZFIN|ZDB-GENE-021206-1	575	hspd1 "heat shock 60kD protein	0.960	0.638	0.555	5.7e-107
ASPGD|ASPL0000003680	588	AN6089 [Emericella nidulans (t	0.960	0.624	0.571	7.2e-107
TIGR_CMR|CBU_1718	552	CBU_1718 "chaperonin, 60 kDa"	0.960	0.664	0.558	1.5e-106

TAIR|locus:2076081 HSP60 "heat shock protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 1535 (545.4 bits), Expect = 1.6e-157, P = 1.6e-157
 Identities = 308/382 (80%), Positives = 333/382 (87%)

Query:     1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
             MEKVGKEGVITI DGKTL+NELEVVEGMKLDRGY SPYFITNQK QKCEL+DPLIL+HEK
Sbjct:   196 MEKVGKEGVITIQDGKTLFNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEK 255

Query:    61 KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
             KIS++ ++V+VLELALKRQRPLLIV+EDVES+ALATLILNKLRAGIKVCAIKAPGFGENR
Sbjct:   256 KISSINSIVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENR 315

Query:   121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
             KAN+QDLA LTGG++IT+ELGM+LEKV+L MLGTCKKVT+SKDDTVILDGAGDKK IEER
Sbjct:   316 KANLQDLAALTGGEVITDELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEER 375

Query:   181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             CEQIRSAIE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA
Sbjct:   376 CEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 435

Query:   241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
             AVEEGI+PGGGV             TANFDQKIGVQIIQNALKTPV+TI           
Sbjct:   436 AVEEGILPGGGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVI 495

Query:   301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
               KLLEQDN DLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSL+TTTEA+VV+L
Sbjct:   496 VGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVVDL 555

Query:   361 PKEEKEAPXXXXXXXXXXXXDY 382
             PK+E E+             DY
Sbjct:   556 PKDESESGAAGAGMGGMGGMDY 577

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0042026 "protein refolding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0051131 "chaperone-mediated protein complex assembly" evidence=TAS

GO:0007005 "mitochondrion organization" evidence=TAS

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2046590 HSP60-2 "heat shock protein 60-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
 Identities = 291/368 (79%), Positives = 319/368 (86%)

Query:     1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
             ME VGKEGVITI DGKTL+NELEVVEGMK+DRGYISPYFITN K QKCELEDPLIL+HEK
Sbjct:   197 METVGKEGVITIQDGKTLFNELEVVEGMKIDRGYISPYFITNPKTQKCELEDPLILIHEK 256

Query:    61 KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
             KISN+ A+V+VLELALK+QRPLLIVAEDVES+ALATLILNKLRA IKVCA+KAPGFGENR
Sbjct:   257 KISNINAMVKVLELALKKQRPLLIVAEDVESDALATLILNKLRANIKVCAVKAPGFGENR 316

Query:   121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
             KAN+ DLA LTG  +ITEELGM+L+ ++L M G CKKVT+SKDDTV+LDGAGDK++I ER
Sbjct:   317 KANLHDLAALTGAQVITEELGMNLDNIDLSMFGNCKKVTVSKDDTVVLDGAGDKQAIGER 376

Query:   181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             CEQIRS +E STSDYDKEKLQERLAKLSGGVAVLKIGGASE EV EKKDRVTDALNATKA
Sbjct:   377 CEQIRSMVEASTSDYDKEKLQERLAKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKA 436

Query:   241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
             AVEEGIVPGGGV            STANFDQKIGVQIIQNALKTPV+TI           
Sbjct:   437 AVEEGIVPGGGVALLYASKELEKLSTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVV 496

Query:   301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
               KLLEQDN DLGYDAAKGEYVDM+K+GIIDPLKVIRTALVDAASVSSL+TTTEA+V E+
Sbjct:   497 VGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVTEI 556

Query:   361 PKEEKEAP 368
             P +E  +P
Sbjct:   557 PTKEVASP 564

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;ISS;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0006954 "inflammatory response" evidence=ISS

GO:0042026 "protein refolding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2087959 HSP60-3A "heat shock protein 60-3A" [Arabidopsis thaliana (taxid:3702)]

 Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
 Identities = 247/368 (67%), Positives = 297/368 (80%)

Query:     1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
             MEKVGKEGVIT+ DG TL NELEVVEGMKL RGYISPYFIT++K QKCELE+P+IL+HEK
Sbjct:   196 MEKVGKEGVITVADGNTLDNELEVVEGMKLARGYISPYFITDEKTQKCELENPIILIHEK 255

Query:    61 KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
             KIS++ ++++VLE A+K  RPLLIVAEDVES+ALA LILNK   G+KVCAIKAPGFG+NR
Sbjct:   256 KISDINSLLKVLEAAVKSSRPLLIVAEDVESDALAMLILNKHHGGLKVCAIKAPGFGDNR 315

Query:   121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
             KA++ DLAVLTG ++I+EE G+ LEK+  ++LGT KKVT+++DDT+IL G GDKK IEER
Sbjct:   316 KASLDDLAVLTGAEVISEERGLSLEKIRPELLGTAKKVTVTRDDTIILHGGGDKKLIEER 375

Query:   181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             CE++RSA E STS +D+EK QERL+KLSGGVAV K+GGASE+EVGE+KDRVTDALNAT+A
Sbjct:   376 CEELRSANEKSTSTFDQEKTQERLSKLSGGVAVFKVGGASESEVGERKDRVTDALNATRA 435

Query:   241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
             AVEEGI+PGGGV             T N DQ+ GVQI+QNALK P  TI           
Sbjct:   436 AVEEGIIPGGGVALLYATKALDNLQTENEDQRRGVQIVQNALKAPAFTIAANAGYDGSLV 495

Query:   301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
               KLLEQD+ + G+DAAKG+YVDMVK+GIIDP+KVIRTAL DAASVS L+TTTEA V  L
Sbjct:   496 VGKLLEQDDCNFGFDAAKGKYVDMVKAGIIDPVKVIRTALTDAASVSLLLTTTEASV--L 553

Query:   361 PKEEKEAP 368
              K ++  P
Sbjct:   554 VKADENTP 561

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

UNIPROTKB|G4NAR5 MGG_03165 "Heat shock protein 60" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 210/371 (56%), Positives = 277/371 (74%)

Query:     1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
             MEKVGKEGVIT+ +GKTL +ELEV EGM+ DRG++SPYFIT+ K QK E E PLIL+ EK
Sbjct:   200 MEKVGKEGVITVKEGKTLVDELEVTEGMRFDRGFVSPYFITDAKAQKVEFEKPLILLSEK 259

Query:    61 KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
             KIS +  ++  LE++ + +RPL+I+AED+E EALA  ILNKLR  ++V A+KAPGFG+NR
Sbjct:   260 KISAVQDIIPALEISTQTRRPLVIIAEDIEGEALAVCILNKLRGQLQVAAVKAPGFGDNR 319

Query:   121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
             K+ + D+AVLT G + T+EL + LEK  +DMLG+   +TI+K+DT++L+G G K  I +R
Sbjct:   320 KSILGDIAVLTNGTVFTDELDVKLEKATIDMLGSTGSITITKEDTIVLNGEGSKDMITQR 379

Query:   181 CEQIRSAIEN-STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239
             CEQIR  + + +TS+Y+KEKLQERLAKLSGGVAV+K+GG+SE EVGEKKDR  DALNAT+
Sbjct:   380 CEQIRGVMADPTTSEYEKEKLQERLAKLSGGVAVIKVGGSSEVEVGEKKDRFVDALNATR 439

Query:   240 AAVEEGIVPGGGVXXXXXXXXXXXX-STANFDQKIGVQIIQNALKTPVHTIXXXXXXXXX 298
             AAVEEGI+PGGG               +ANFDQ++GV II+NA+  P  TI         
Sbjct:   440 AAVEEGILPGGGTALLKAASQALGDVKSANFDQQLGVSIIKNAITRPARTIVENAGLEGS 499

Query:   299 XXXXKLLEQDNTDL--GYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAI 356
                 KL+++  +D   GYDAAKGEYVDM+ +GI+DPLKV+RT L+DA+ V+SL+ TTE  
Sbjct:   500 VIVGKLMDEFGSDFRKGYDAAKGEYVDMIDAGIVDPLKVVRTGLLDASGVASLLGTTEVA 559

Query:   357 VVELPKEEKEA 367
             +VE P+E+  A
Sbjct:   560 IVEAPEEKGPA 570

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0288181 hspA "chaperonin 60" [Dictyostelium discoideum (taxid:44689)]

 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 204/363 (56%), Positives = 277/363 (76%)

Query:     1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
             MEK+GKEGVIT+ DGKTL +ELE++EGMK D+G+IS YFI + K QKCE +DP+ILV + 
Sbjct:   183 MEKIGKEGVITVQDGKTLKDELEIIEGMKFDQGFISRYFINDAKEQKCEFDDPVILVVDG 242

Query:    61 KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
             KISN+  +V +LEL   + + L+I+A+++E +AL+ LI NK+R G++VCA+KAPGFG+ +
Sbjct:   243 KISNVQQLVPILELVHSKHKKLVIIADNIEGDALSALIFNKMR-GLQVCAVKAPGFGDLK 301

Query:   121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
             + N+QD+AV++G  +I+EELG+ LE V++ MLG+ KK+TI  D T+ILDGAGDK +I+ER
Sbjct:   302 RVNLQDIAVISGAQVISEELGVRLEDVDITMLGSAKKITIDSDSTIILDGAGDKAAIQER 361

Query:   181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
              E IR ++  +TSDYDK +L+ RLAK+ GGVAV+++GGASE EVGEKKDR+TDALNATKA
Sbjct:   362 VELIRESLTRTTSDYDKTQLETRLAKIGGGVAVIRVGGASEVEVGEKKDRITDALNATKA 421

Query:   241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
             AVEEGIVPGGG                NFDQ IGV+I+++AL  P  TI           
Sbjct:   422 AVEEGIVPGGGTALLYSTLALKKIKMDNFDQTIGVKIVRDALLIPCKTIANNAGVEGSVV 481

Query:   301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
               +LL + + + GY+A KG Y +M+++GIIDP KV+RTAL+DAASV+SLMTTTEA+VVE+
Sbjct:   482 IGRLLSKRDFEYGYNAQKGVYENMIQAGIIDPTKVVRTALIDAASVASLMTTTEAMVVEI 541

Query:   361 PKE 363
              K+
Sbjct:   542 KKD 544

GO:0046956 "positive phototaxis" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0009408 "response to heat" evidence=IEP

GO:0031288 "sorocarp morphogenesis" evidence=IMP

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0153 PF10_0153 "hsp60" [Plasmodium falciparum (taxid:5833)]

 Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
 Identities = 202/367 (55%), Positives = 275/367 (74%)

Query:     1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
             M+KVGKEG IT+ +GKTL +ELE+VEG+K DRGYISPYFI N K+QK EL+ P IL+HEK
Sbjct:   195 MKKVGKEGTITVTEGKTLQHELEIVEGIKFDRGYISPYFINNSKDQKVELDKPYILIHEK 254

Query:    61 KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
             KIS + +++ VLE  L+ Q  LL++AEDV+S+ALATLI+NKLR G+K+CA+KAPGFGE+R
Sbjct:   255 KISTVKSLLPVLEHVLQNQSSLLVIAEDVDSDALATLIVNKLRLGLKICAVKAPGFGEHR 314

Query:   121 KANMQDLAVLTGGDLITEELGMDLEKVNL-DMLGTCKKVTISKDDTVILDGAGDKKSIEE 179
             KA + D+AV+TG  +ITEE G+ L+   +   LG  K + ++KD T+I++G G K+ I E
Sbjct:   315 KALIHDIAVMTGAKVITEETGLKLDDPQVVSYLGKAKSINVTKDSTLIMEGEGKKEEINE 374

Query:   180 RCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239
             RCE IR+AI+ +TSDY+KEKLQERLAK++GGVA++K+GG SE EV E KDR+ DAL ATK
Sbjct:   375 RCESIRNAIKMNTSDYEKEKLQERLAKITGGVALIKVGGISEVEVNEIKDRIQDALCATK 434

Query:   240 AAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXX 299
             AAVEEGIVPGGG              T N+DQ++GV II++A K P+  I          
Sbjct:   435 AAVEEGIVPGGGSALLFASKELDSVQTDNYDQRVGVNIIKDACKAPIKQIAENAGHEGSV 494

Query:   300 XXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359
                 +L++ N+++G++A +G+YVDM++SGIIDP KV++TA+ DAAS++SLMTTTE  +V+
Sbjct:   495 VAGNILKEKNSNIGFNAQEGKYVDMIESGIIDPTKVVKTAISDAASIASLMTTTEVAIVD 554

Query:   360 LPKEEKE 366
                 + E
Sbjct:   555 FKDSKNE 561

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

UNIPROTKB|Q8IJN9 PF10_0153 "Heat shock protein 60" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
 Identities = 202/367 (55%), Positives = 275/367 (74%)

Query:     1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
             M+KVGKEG IT+ +GKTL +ELE+VEG+K DRGYISPYFI N K+QK EL+ P IL+HEK
Sbjct:   195 MKKVGKEGTITVTEGKTLQHELEIVEGIKFDRGYISPYFINNSKDQKVELDKPYILIHEK 254

Query:    61 KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
             KIS + +++ VLE  L+ Q  LL++AEDV+S+ALATLI+NKLR G+K+CA+KAPGFGE+R
Sbjct:   255 KISTVKSLLPVLEHVLQNQSSLLVIAEDVDSDALATLIVNKLRLGLKICAVKAPGFGEHR 314

Query:   121 KANMQDLAVLTGGDLITEELGMDLEKVNL-DMLGTCKKVTISKDDTVILDGAGDKKSIEE 179
             KA + D+AV+TG  +ITEE G+ L+   +   LG  K + ++KD T+I++G G K+ I E
Sbjct:   315 KALIHDIAVMTGAKVITEETGLKLDDPQVVSYLGKAKSINVTKDSTLIMEGEGKKEEINE 374

Query:   180 RCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239
             RCE IR+AI+ +TSDY+KEKLQERLAK++GGVA++K+GG SE EV E KDR+ DAL ATK
Sbjct:   375 RCESIRNAIKMNTSDYEKEKLQERLAKITGGVALIKVGGISEVEVNEIKDRIQDALCATK 434

Query:   240 AAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXX 299
             AAVEEGIVPGGG              T N+DQ++GV II++A K P+  I          
Sbjct:   435 AAVEEGIVPGGGSALLFASKELDSVQTDNYDQRVGVNIIKDACKAPIKQIAENAGHEGSV 494

Query:   300 XXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359
                 +L++ N+++G++A +G+YVDM++SGIIDP KV++TA+ DAAS++SLMTTTE  +V+
Sbjct:   495 VAGNILKEKNSNIGFNAQEGKYVDMIESGIIDPTKVVKTAISDAASIASLMTTTEVAIVD 554

Query:   360 LPKEEKE 366
                 + E
Sbjct:   555 FKDSKNE 561

GO:0005739 "mitochondrion" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

ZFIN|ZDB-GENE-021206-1 hspd1 "heat shock 60kD protein 1 (chaperonin)" [Danio rerio (taxid:7955)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 205/369 (55%), Positives = 274/369 (74%)

Query:     1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
             M+KVG++GVIT+ DGKTL++ELE++EGMK DRGYISPYFI   K QKCE +D  +L+ EK
Sbjct:   190 MKKVGRKGVITVKDGKTLHDELEIIEGMKFDRGYISPYFINTAKGQKCEFQDAYVLLSEK 249

Query:    61 KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
             KIS++ ++V  LE+A + ++PL+IVAEDV+ EAL+TL+LN+L+ G++V A+KAPGFG+NR
Sbjct:   250 KISSVQSIVPALEIANQHRKPLVIVAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNR 309

Query:   121 KANMQDLAVLTGGDLITEE-LGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEE 179
             K  +QD+AV TGG +  +E +G+ LE +     G   +V ++KDDT++L G GD  +IE+
Sbjct:   310 KNQLQDMAVSTGGTVFGDEAMGLALEDIQAHDFGKVGEVIVTKDDTMLLKGRGDASAIEK 369

Query:   180 RCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239
             R  +I   +E++ SDY+KEKL ERLAKLS GVAV+K+GG S+ EV EKKDRVTDALNAT+
Sbjct:   370 RVNEIAEQLESTNSDYEKEKLNERLAKLSDGVAVIKVGGTSDVEVNEKKDRVTDALNATR 429

Query:   240 AAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXX 299
             AAVEEGIVPGGG               AN DQKIG+ II+ +L+ P  TI          
Sbjct:   430 AAVEEGIVPGGGCALLRCIPALDNIKPANADQKIGIDIIRRSLRIPAMTIAKNAGVEGSL 489

Query:   300 XXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359
                K+L Q +T++GYDA  GEYV+MV+ GIIDP KV+RTAL+DAA V+SL++T EA+V E
Sbjct:   490 VVEKIL-QSSTEIGYDAMNGEYVNMVERGIIDPTKVVRTALLDAAGVASLLSTAEAVVTE 548

Query:   360 LPKEEKEAP 368
             +PKEEKE P
Sbjct:   549 IPKEEKEMP 557

GO:0042026 "protein refolding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006950 "response to stress" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0042246 "tissue regeneration" evidence=IMP

GO:0031101 "fin regeneration" evidence=IMP

ASPGD|ASPL0000003680 AN6089 [Emericella nidulans (taxid:162425)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 212/371 (57%), Positives = 274/371 (73%)

Query:     1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
             ME+VGKEGVIT+ +GKTL +ELEV EGM+ DRGY SPYFIT+ K QK E E PLIL+ EK
Sbjct:   199 MERVGKEGVITVKEGKTLEDELEVTEGMRFDRGYTSPYFITDAKAQKVEFEKPLILLSEK 258

Query:    61 KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
             KIS +  ++  LE +   +RPL+I+AED+E EALA  ILNKLR  ++V A+KAPGFG+NR
Sbjct:   259 KISAVQDIIPALEASTTLRRPLVIIAEDIEGEALAVCILNKLRGQLQVAAVKAPGFGDNR 318

Query:   121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
             K+ + DL VLT G + T+EL + LEK+  DMLG+   +TI+K+DT+IL+G G K +I +R
Sbjct:   319 KSILGDLGVLTNGTVFTDELDIKLEKLTPDMLGSTGSITITKEDTIILNGEGSKDAIAQR 378

Query:   181 CEQIRSAIEN-STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239
             CEQIR  + + +TS+Y+KEKLQERLAKLSGGVAV+K+GGASE EVGEKKDRV DALNAT+
Sbjct:   379 CEQIRGVMADPTTSEYEKEKLQERLAKLSGGVAVIKVGGASEVEVGEKKDRVVDALNATR 438

Query:   240 AAVEEGIVPGGGVXXXXXXXXXXXX-STANFDQKIGVQIIQNALKTPVHTIXXXXXXXXX 298
             AAVEEGI+PGGG                ANFDQ++GV I+++A+  P  TI         
Sbjct:   439 AAVEEGILPGGGTALLKAAANGLENVKPANFDQQLGVSIVKSAITRPARTIVENAGLEGS 498

Query:   299 XXXXKLLEQDNTDL--GYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAI 356
                 KL ++ + D   G+D+AKGEYVDM+ +GI+DPLKV+RTALVDA+ VSSL+ TTE  
Sbjct:   499 VIVGKLTDEFSKDFNRGFDSAKGEYVDMIAAGIVDPLKVVRTALVDASGVSSLLGTTEVA 558

Query:   357 VVELPKEEKEA 367
             +VE P+E+  A
Sbjct:   559 IVEAPEEKGPA 569

GO:0071470 "cellular response to osmotic stress" evidence=IEP

GO:0051131 "chaperone-mediated protein complex assembly" evidence=IEA

GO:0006458 "'de novo' protein folding" evidence=IEA

GO:0051604 "protein maturation" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0045041 "protein import into mitochondrial intermembrane space" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
 Identities = 205/367 (55%), Positives = 269/367 (73%)

Query:     1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
             MEKVGKEGVIT+ DG  L N LEVVEGM+ DRGY+SPYFI NQ+N   ELE+P IL+ +K
Sbjct:   166 MEKVGKEGVITVEDGSGLENALEVVEGMQFDRGYLSPYFINNQQNMSAELENPFILLVDK 225

Query:    61 KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
             KISN+  ++ +LE   K  RPLL++AED+E EALATL++N +R  +KV A+KAPGFG+ R
Sbjct:   226 KISNIRELIPLLENVAKSGRPLLVIAEDIEGEALATLVVNNIRGVVKVAAVKAPGFGDRR 285

Query:   121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
             KA +QD+AVLTGG +I+EE+G+ LE  +LD LG+ K+V ++KDDT I+DG+GD   I+ R
Sbjct:   286 KAMLQDIAVLTGGKVISEEVGLSLEAASLDDLGSAKRVVVTKDDTTIIDGSGDAGDIKNR 345

Query:   181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
              EQIR  IENS+SDYDKEKLQERLAKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct:   346 VEQIRKEIENSSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 405

Query:   241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
             AVEEG+VPGGGV               N DQ++GV+I + A+  P+  I           
Sbjct:   406 AVEEGVVPGGGVALIRVLKSLDSVEVENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVV 465

Query:   301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
               K+L   + + GY+AA GEY DM++ GI+DP KV RTAL +AAS++ LM TTE +V E 
Sbjct:   466 ADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEA 525

Query:   361 PKEEKEA 367
             PK+++E+
Sbjct:   526 PKKKEES 532

GO:0006457 "protein folding" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92H04	CH60_RICCN	No assigned EC number	0.6136	0.9554	0.6660	yes	no
B0BUM0	CH60_RICRO	No assigned EC number	0.6120	0.9581	0.6691	yes	no
A4YRI5	CH601_BRASO	No assigned EC number	0.6185	0.9607	0.6808	yes	no
Q4UMF2	CH60_RICFE	No assigned EC number	0.6049	0.9607	0.6709	yes	no
A8EY36	CH60_RICCK	No assigned EC number	0.6126	0.9528	0.6654	yes	no
B6IU98	CH60_RHOCS	No assigned EC number	0.6071	0.9528	0.6666	yes	no
A8GPB6	CH60_RICAH	No assigned EC number	0.6076	0.9607	0.6697	yes	no
O85754	CH60_RICTY	No assigned EC number	0.6145	0.9685	0.6727	yes	no
Q1GRD4	CH602_SPHAL	No assigned EC number	0.5942	0.9790	0.6938	yes	no
A0L4C9	CH60_MAGSM	No assigned EC number	0.5962	0.9633	0.6678	yes	no
C3PP72	CH60_RICAE	No assigned EC number	0.6092	0.9581	0.6691	yes	no
Q9ZCT7	CH60_RICPR	No assigned EC number	0.6145	0.9685	0.6727	yes	no
Q2WAW8	CH60_MAGSA	No assigned EC number	0.6126	0.9528	0.6594	yes	no
A8GT30	CH60_RICRS	No assigned EC number	0.6120	0.9581	0.6691	yes	no
P29197	CH60A_ARATH	No assigned EC number	0.8937	0.9607	0.6360	yes	no
Q3SQS3	CH601_NITWN	No assigned EC number	0.5890	0.9869	0.6955	yes	no
P35480	CH60_BRANA	No assigned EC number	0.8459	0.9659	0.6286	N/A	no
A8I5R5	CH602_AZOC5	No assigned EC number	0.6361	0.9424	0.6642	yes	no
Q54J97	CH60_DICDI	No assigned EC number	0.6060	0.9476	0.6510	yes	no
Q11LG4	CH601_MESSB	No assigned EC number	0.6153	0.9502	0.6672	yes	no
P77829	CH601_BRAJA	No assigned EC number	0.5869	0.9633	0.6814	yes	no
Q0AS40	CH60_MARMM	No assigned EC number	0.6071	0.9528	0.6606	yes	no
Q1M3H2	CH603_RHIL3	No assigned EC number	0.5759	0.9869	0.6955	yes	no
B2ICU4	CH60_BEII9	No assigned EC number	0.6168	0.9633	0.6715	yes	no
P35471	CH605_RHIME	No assigned EC number	0.6073	0.9869	0.6955	yes	no
Q98IH9	CH602_RHILO	No assigned EC number	0.5811	0.9869	0.6955	yes	no
Q43298	CH62_MAIZE	No assigned EC number	0.8769	0.9895	0.6562	N/A	no
A5EG60	CH603_BRASB	No assigned EC number	0.6198	0.9502	0.6722	yes	no
Q2NBL8	CH601_ERYLH	No assigned EC number	0.6047	0.9790	0.6938	yes	no
Q05046	CH62_CUCMA	No assigned EC number	0.9239	0.9633	0.64	N/A	no
Q2RY28	CH601_RHORT	No assigned EC number	0.6178	0.9895	0.6961	yes	no
Q05045	CH61_CUCMA	No assigned EC number	0.8994	0.9633	0.64	N/A	no
P29185	CH61_MAIZE	No assigned EC number	0.8956	0.9528	0.6308	N/A	no
Q5B041	HSP60_EMENI	No assigned EC number	0.6118	0.9607	0.6241	yes	no
C4K2T9	CH60_RICPU	No assigned EC number	0.6120	0.9581	0.6691	yes	no
Q2KAU2	CH602_RHIEC	No assigned EC number	0.6043	0.9528	0.6715	yes	no
A7HQQ0	CH60_PARL1	No assigned EC number	0.6126	0.9528	0.6618	yes	no
A6U901	CH603_SINMW	No assigned EC number	0.5885	0.9816	0.6918	yes	no
Q1RIZ3	CH60_RICBR	No assigned EC number	0.6118	0.9685	0.6727	yes	no
A8GW07	CH60_RICB8	No assigned EC number	0.6118	0.9685	0.6727	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	OsI_33923	Os10g0462900 (574 aa)
		(Oryza sativa Indica)
Predicted Functional Partners:
	OsI_27057	Os07g0641700 (98 aa)	•			•	•		•		0.903
	tufM	Os03g0851100 ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site [...] (453 aa)			•	•			•		0.664
	OsI_16800	Os04g0538100 (774 aa)			•	•			•		0.639
	OsI_01632	Os01g0321300 (978 aa)							•		0.625
	BGIOSIBSE038426	annotation not avaliable (417 aa)							•		0.609
	OsI_31514	Os09g0438700 (245 aa)	•		•		•		•		0.605
	tufA	Translational elongation factor Tu (Putative uncharacterized protein); This protein promotes th [...] (546 aa)			•	•			•		0.602
	OsI_09178	Os02g0781400 (255 aa)	•		•				•		0.593
	Fe-SOD	Os06g0143000 ; Destroys radicals which are normally produced within the cells and which are tox [...] (255 aa)							•		0.563
	OsI_09127	Os03g0113700 (676 aa)			•	•			•		0.556

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	382
cd03344	520	cd03344, GroEL, GroEL_like type I chaperonin	0.0
PRK00013	542	PRK00013, groEL, chaperonin GroEL; Reviewed	0.0
PRK12849	542	PRK12849, groEL, chaperonin GroEL; Reviewed	0.0
PTZ00114	555	PTZ00114, PTZ00114, Heat shock protein 60; Provisi	0.0
TIGR02348	524	TIGR02348, GroEL, chaperonin GroL	1e-178
PRK12850	544	PRK12850, groEL, chaperonin GroEL; Reviewed	1e-175
PRK12852	545	PRK12852, groEL, chaperonin GroEL; Reviewed	1e-170
PRK12851	541	PRK12851, groEL, chaperonin GroEL; Reviewed	1e-169
PRK14104	546	PRK14104, PRK14104, chaperonin GroEL; Provisional	1e-147
CHL00093	529	CHL00093, groEL, chaperonin GroEL	1e-139
PLN03167	600	PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr	1e-118
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	1e-109
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	3e-77
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	1e-63
cd03333	209	cd03333, chaperonin_like, chaperonin_like superfam	3e-30
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	2e-09
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	5e-08
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	9e-07
cd03336	517	cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type	3e-06
TIGR02341	518	TIGR02341, chap_CCT_beta, T-complex protein 1, bet	9e-06
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	3e-05
PTZ00212	533	PTZ00212, PTZ00212, T-complex protein 1 subunit be	5e-05
cd03337	480	cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type	4e-04
cd03338	515	cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type	0.002
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	0.002
TIGR02344	525	TIGR02344, chap_CCT_gamma, T-complex protein 1, ga	0.003
TIGR02342	517	TIGR02342, chap_CCT_delta, T-complex protein 1, de	0.004

>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin

 Score =  600 bits (1549), Expect = 0.0
 Identities = 230/359 (64%), Positives = 296/359 (82%), Gaps = 1/359 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGK+GVIT+ +GKTL  ELEVVEGM+ DRGY+SPYF+T+ +  + ELE+P IL+ +K
Sbjct: 163 MEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDK 222

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS++  ++ +LEL  K  RPLLI+AEDVE EALATL++NKLR G+KVCA+KAPGFG+ R
Sbjct: 223 KISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRR 282

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA ++D+A+LTGG +I+EELG+ LE V L+ LG  KKV ++KDDT I+ GAGDK +I+ R
Sbjct: 283 KAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKAR 342

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYDKEKLQERLAKLSGGVAV+K+GGA+E E+ EKKDRV DALNAT+A
Sbjct: 343 IAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRA 402

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALL A+  L+KL   N D+K+G++I++ AL+ P+  IA NAGV+G+VV
Sbjct: 403 AVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVV 462

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359
           V K+LE  +   GYDAA GEYVDM+++GIIDP KV+R+AL +AASV+SL+ TTEA+VV+
Sbjct: 463 VEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVVD 520

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520

>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed

 Score =  598 bits (1544), Expect = 0.0
 Identities = 225/380 (59%), Positives = 292/380 (76%), Gaps = 2/380 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEGVIT+ + K    ELEVVEGM+ DRGY+SPYF+T+ +  + ELE+P IL+ +K
Sbjct: 165 MEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDK 224

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   +  +PLLI+AEDVE EALATL++NKLR  +KV A+KAPGFG+ R
Sbjct: 225 KISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRR 284

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA ++D+A+LTGG +I+EELG+ LE   L+ LG  KKV ++KD+T I+DGAGDK++I+ R
Sbjct: 285 KAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKAR 344

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QI++ IE +TSDYD+EKLQERLAKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+A
Sbjct: 345 VAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRA 404

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALL AA  LE L   N D+  G+ I+  AL+ P+  IA NAG+EG+VV
Sbjct: 405 AVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVV 464

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           V K+        GY+AA GEYVDM+++GIIDP KV R+AL +AASV+ L+ TTEA+V + 
Sbjct: 465 VEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADK 524

Query: 361 PKEEKEAPGGMGGMGGMGGM 380
           P  EK+A     G GGMGGM
Sbjct: 525 P--EKKAAAPPMGGGGMGGM 542

Length = 542

>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed

 Score =  571 bits (1474), Expect = 0.0
 Identities = 234/380 (61%), Positives = 309/380 (81%), Gaps = 2/380 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGK+GVIT+ + KTL  ELEV EGM+ DRGY+SPYF+T+ +  +  LEDPLIL+ +K
Sbjct: 165 MEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDK 224

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS+L  ++ +LE   +  +PLLI+AEDVE EALATL++NKLR G+KV A+KAPGFG+ R
Sbjct: 225 KISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRR 284

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA ++D+A+LTGG +I+E+LG+ LE+V LD LG  K+VTI+KD+T I+DGAGDK++IE R
Sbjct: 285 KAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEAR 344

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQERLAKL+GGVAV+K+G A+E E+ E+KDRV DALNAT+A
Sbjct: 345 VAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRA 404

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALL AAK L++L+  N DQ  GV+I++ AL+ P+  IA NAG++G+VV
Sbjct: 405 AVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVV 464

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           V K+LE ++   G++AA GEY D++ +GIIDP+KV R+AL +AASV+ L+ TTEA+V + 
Sbjct: 465 VAKVLELED-GFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADK 523

Query: 361 PKEEKEAPGGMGGMGGMGGM 380
           P EE++ PGGMGGMGGMG M
Sbjct: 524 P-EEEDPPGGMGGMGGMGHM 542

Length = 542

>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional

 Score =  568 bits (1465), Expect = 0.0
 Identities = 244/381 (64%), Positives = 308/381 (80%), Gaps = 6/381 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGK+G IT+ DGKTL +ELEVVEGM  DRGYISPYF+TN+K QK ELE+PLILV +K
Sbjct: 177 MDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDK 236

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KIS++ +++ +LE A+K +RPLLI+AEDVE EAL TLI+NKLR G+KVCA+KAPGFG+NR
Sbjct: 237 KISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNR 296

Query: 121 KANMQDLAVLTGGDLITEE-LGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEE 179
           K  +QD+AVLTG  +++E+ +G+ L+  +  MLG+ KKVT++KD+TVIL G GDK  I+E
Sbjct: 297 KDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKE 356

Query: 180 RCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239
           R E +RS IE +TS+YDKEKL+ERLAKLSGGVAV+K+GGASE EV EKKDR+ DALNAT+
Sbjct: 357 RVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATR 416

Query: 240 AAVEEGIVPGGGVALLYAAKELEKLSTANF---DQKIGVQIIQNALKTPVHTIAANAGVE 296
           AAVEEGIVPGGGVALL A+K L+KL   N    DQ+ GV+I++NAL+ P   IA NAGVE
Sbjct: 417 AAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVE 476

Query: 297 GAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAI 356
           GAVVV K+LE+ +   GYDA  GEYV+M ++GIIDP KV+R+ALVDAASV+SLM TTEA 
Sbjct: 477 GAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAA 536

Query: 357 VVELPKEEKEAPGGMGGMGGM 377
           +V+LPKE+K+          M
Sbjct: 537 IVDLPKEKKKNK--NSAAPPM 555

Length = 555

>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL

 Score =  504 bits (1300), Expect = e-178
 Identities = 213/362 (58%), Positives = 285/362 (78%), Gaps = 1/362 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGK+GVIT+ + K+L  ELEVVEGM+ DRGYISPYF+T+ +  + ELE+P IL+ +K
Sbjct: 164 MEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDK 223

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ +LE   +  +PLLI+AEDVE EALATL++NKLR  + VCA+KAPGFG+ R
Sbjct: 224 KISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRR 283

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA ++D+A+LTGG +I+EELG+ LE+V LD LG  KKVT+ KD+T I++GAGDK +I+ R
Sbjct: 284 KAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKAR 343

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QI++ IE +TSDYD+EKLQERLAKL+GGVAV+K+G A+E E+ EKK R+ DALNAT+A
Sbjct: 344 VAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRIEDALNATRA 403

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALL AA  LE L     D+ IG+ I++ AL+ P+  IA NAG++GAVV
Sbjct: 404 AVEEGIVPGGGVALLRAAAALEGLKGDGEDEAIGIDIVKRALEAPLRQIAENAGLDGAVV 463

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
             K+ E    + G++AA GEY D+V++GIIDP KV R+AL +AAS++ L+ TTEA+V + 
Sbjct: 464 AEKVKELKG-NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADK 522

Query: 361 PK 362
           P+
Sbjct: 523 PE 524

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118 [Protein fate, Protein folding and stabilization]. Length = 524

>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed

 Score =  499 bits (1287), Expect = e-175
 Identities = 237/382 (62%), Positives = 300/382 (78%), Gaps = 3/382 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ + KTL  EL+VVEGM+ DRGY+SPYF+TN +  + ELEDP IL+HEK
Sbjct: 166 MDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEK 225

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISNL  ++ +LE  ++  RPLLI+AEDVE EALATL++NKLR G+K  A+KAPGFG+ R
Sbjct: 226 KISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRR 285

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA ++D+AVLTGG +I+E+LG+ LE V LDMLG  K+V I+K++T I+DGAGDKK+IE R
Sbjct: 286 KAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEAR 345

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
            +QIR+ IE +TSDYD+EKLQERLAKL+GGVAV+++GGA+E EV EKKDRV DAL+AT+A
Sbjct: 346 VKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRA 405

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALL A   L  L  AN D+  G+ I++ AL+ P+  IA NAG EG+VV
Sbjct: 406 AVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVV 465

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGK+ E    + G++A  GEY DMV++GIIDP KV RTAL DAAS+++L+ TTEA+V E 
Sbjct: 466 VGKVAEL-PGNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEA 524

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PK  K A    G   GMGGM Y
Sbjct: 525 PK--KAAAAAAGPGPGMGGMGY 544

Length = 544

>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed

 Score =  487 bits (1254), Expect = e-170
 Identities = 229/382 (59%), Positives = 296/382 (77%), Gaps = 2/382 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVG EGVIT+ + K+L  E+++VEGMK DRGY+SPYF+TN +    EL+D  IL+HEK
Sbjct: 166 MQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEK 225

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+S L A++ VLE  ++  +PLLI+AEDVE EALATL++N+LR G+KV A+KAPGFG+ R
Sbjct: 226 KLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRR 285

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA ++D+A+LTGG LI+E+LG+ LE V L MLG  KKV I K++T I++GAG K  IE R
Sbjct: 286 KAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEAR 345

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QI++ IE +TSDYD+EKLQERLAKL+GGVAV+++GGA+E EV EKKDRV DALNAT+A
Sbjct: 346 VGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRA 405

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AV+EGIVPGGGVALL A K + +++  N D + G+ I+  AL+ P+  IA NAGVEG++V
Sbjct: 406 AVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIV 465

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGK+LE  +   G+DA   EYVDMV  GIIDP KV+RTAL DAASV+ L+ TTEA+V EL
Sbjct: 466 VGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAEL 525

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PK  K+A   M   GGMGGM +
Sbjct: 526 PK--KDAAPAMPAGGGMGGMGF 545

Length = 545

>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed

 Score =  482 bits (1243), Expect = e-169
 Identities = 230/376 (61%), Positives = 292/376 (77%), Gaps = 5/376 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+T+    + ELEDP IL+HEK
Sbjct: 166 MEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEK 225

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISNL  ++ VLE  ++  +PLLI+AEDVE EALATL++NKLR G+KV A+KAPGFG+ R
Sbjct: 226 KISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRR 285

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA ++D+A+LTGG +I+E+LG+ LE V L+ LG  KKV + K++T I+DGAG K  IE R
Sbjct: 286 KAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGR 345

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR+ IE +TSDYD+EKLQERLAKL+GGVAV+++G ++E EV EKKDRV DAL+AT+A
Sbjct: 346 VAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRA 405

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALL A K L+KL TAN DQ+ GV+I++ AL+ PV  IA NAG EG+VV
Sbjct: 406 AVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVV 465

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGKL E+     G++AA  EY D+   G+IDP+KV+RTAL +AASV+ L+ TTEA+V E 
Sbjct: 466 VGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEK 524

Query: 361 PKEEKEAP----GGMG 372
           PK+E   P    GGM 
Sbjct: 525 PKKEPAPPAPPGGGMD 540

Length = 541

>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional

 Score =  427 bits (1100), Expect = e-147
 Identities = 222/382 (58%), Positives = 299/382 (78%), Gaps = 1/382 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVG EGVIT+ + K+L  EL+VVEGM+ DRGYISPYF+TN    + E++D  IL++EK
Sbjct: 166 MKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEK 225

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+S+L  ++ +LE  ++  +PL+IVAEDVE EALATL++N+LR G+KV A+KAPGFG+ R
Sbjct: 226 KLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRR 285

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A+LTGG  I+E+LG+ LE V L MLG  KKV I K++T I++GAG K  IE R
Sbjct: 286 KAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEAR 345

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QI++ IE +TSDYD+EKLQERLAKL+GGVAV+++GGA+E EV E+KDRV DA++AT+A
Sbjct: 346 VAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRA 405

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIVPGGGVALL A+++L+ + T N DQK GV+I++ AL  P   IA NAG +G+V+
Sbjct: 406 AVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVI 465

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
           VGK+LE++    G+D+  GEY ++V  GIIDP KV+RTA+ +AASV++L+ TTEA+V EL
Sbjct: 466 VGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAEL 525

Query: 361 PKEEKEAPGGMGGMGGMGGMDY 382
           PK+    P    G GGMGGMD+
Sbjct: 526 PKKGGAGPAMPPG-GGMGGMDF 546

Length = 546

>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL

 Score =  406 bits (1044), Expect = e-139
 Identities = 179/367 (48%), Positives = 273/367 (74%), Gaps = 5/367 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           +EKVG+EGVI++ +GK+   ELE+ EGM+ ++G+ISPYF+T+ +  +   E+P IL+ +K
Sbjct: 165 IEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDK 224

Query: 61  KISNLTA-VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGEN 119
           KI+ +   ++ +LE   K +RPLLI+AEDVE EALATL+LNKLR  + V A++APGFG+ 
Sbjct: 225 KITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDR 284

Query: 120 RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEE 179
           RKA ++D+A+LTGG +ITE+ G+ LE + LD+LG  +++ ++KD T I+   G+++ ++ 
Sbjct: 285 RKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTII-ADGNEEQVKA 343

Query: 180 RCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239
           RCEQ+R  IE + S Y+KEKLQERLAKLSGGVAV+K+G A+E E+ +KK R+ DA+NATK
Sbjct: 344 RCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATK 403

Query: 240 AAVEEGIVPGGGVALLYAAKELEKLSTANF--DQKIGVQIIQNALKTPVHTIAANAGVEG 297
           AAVEEGIVPGGG  L++ ++ L+  +  N   D+ IG  I+  A+  P+  IA NAG  G
Sbjct: 404 AAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNG 463

Query: 298 AVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIV 357
           +V++ K +++ + ++GY+AA  ++V+M ++GIIDP KV R+AL +AAS++S++ TTE I+
Sbjct: 464 SVIIEK-VQEQDFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECII 522

Query: 358 VELPKEE 364
           V+  +  
Sbjct: 523 VDKKESS 529

Length = 529

>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional

 Score =  354 bits (909), Expect = e-118
 Identities = 185/373 (49%), Positives = 264/373 (70%), Gaps = 3/373 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M KVG++GV+T+ +GK+  N L VVEGM+ DRGYISPYF+T+ +    E ++  +L+ +K
Sbjct: 220 MSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDK 279

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KI+N   ++ +LE A++   PLLI+AED+E EALATL++NKLR  +K+ A+KAPGFGE +
Sbjct: 280 KITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERK 339

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
              + D+A+LTGG +I EE+G+ L+KV  ++LGT  KV ++KD T I+     ++++ +R
Sbjct: 340 SQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKR 399

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QI++ IE +  DY+KEKL ER+AKLSGGVAV+++G  +E E+ EKK RV DALNATKA
Sbjct: 400 VAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKA 459

Query: 241 AVEEGIVPGGGVALLYAAKELE--KLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGA 298
           AVEEGIV GGG  LL  A +++  K +  N +QK+G  I++ AL  P+  IA NAGV G+
Sbjct: 460 AVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGS 519

Query: 299 VVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 358
           VV  K+L  DN   GY+AA G+Y D++ +GIIDP KV+R  L  AASV+    T++ +VV
Sbjct: 520 VVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVV 579

Query: 359 ELPKEEKEAPGGM 371
           E+ KE +  P G 
Sbjct: 580 EI-KEPEPVPAGN 591

Length = 600

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score =  329 bits (845), Expect = e-109
 Identities = 163/380 (42%), Positives = 228/380 (60%), Gaps = 32/380 (8%)

Query: 1   MEKVGK-----EGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLI 55
           +EKVGK     +G+I + +      ELEVVEGM  D+GY+SPYF+ +       LE+P I
Sbjct: 167 VEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPD-----KRLENPKI 221

Query: 56  LVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPG 115
           L+ +KK+      +  LE+ +   +PLLI+AED E EALATL++N LR G  V  +KAPG
Sbjct: 222 LLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPG 280

Query: 116 FGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKK 175
             +  KA ++D+A+LTG  +  E+LG       L  LG  K V++ KD T I+ G G   
Sbjct: 281 IDDLAKAYLEDIAILTGRRVKKEDLG-----ERLAKLGGAKIVSVLKDLTTIVLGEGAAG 335

Query: 176 SIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDAL 235
            +EE            T DYD EKLQER AK +GGVA + + GA+E E+ EK+ R+ DAL
Sbjct: 336 LVEET----------KTGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDAL 384

Query: 236 NATKAAVEEG-IVPGGGVALLYAAKELEK--LSTANFDQKIGVQIIQNALKTPVHTIAAN 292
           N  +AAVEEG IVPGGG A + AA  L +  ++    D+++G++    AL+ P   +A N
Sbjct: 385 NVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAEN 444

Query: 293 AGVEGAVVVGKLLEQDNTD-LGYDAAKGEY-VDMVKSGIIDPLKVIRTALVDAASVSSLM 350
           AG++   V+ KL     T   G DA  GEY  DM+++GIIDPLKV R+AL +AA  + L+
Sbjct: 445 AGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLL 504

Query: 351 TTTEAIVVELPKEEKEAPGG 370
            T + I+   P+E+K AP G
Sbjct: 505 LTIDDIIAAKPEEKKPAPPG 524

Length = 524

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score =  245 bits (628), Expect = 3e-77
 Identities = 111/375 (29%), Positives = 169/375 (45%), Gaps = 94/375 (25%)

Query: 1   MEKVGKE------GVITIHDGKT-LYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDP 53
           + KVGKE      GVI +   K     + E+V GM  D+GY+SPY           LE+ 
Sbjct: 167 VLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM-------PKRLENA 219

Query: 54  LILVHEKKISNLTAVVRVLELALKRQRPLLIVAED-VESEALATLILNKLRAGIKVCAIK 112
            IL+ + K+  +                  ++AE  ++ EAL  L          + A++
Sbjct: 220 KILLLDCKLEYV------------------VIAEKGIDDEALHYLAKLG------IMAVR 255

Query: 113 APGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK----DDTVIL 168
                  RK +++ +A  TG  +++      LE +  + LGT   V  +K      T I 
Sbjct: 256 R-----VRKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIE 305

Query: 169 DGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKK 228
              G                                    G VA + + GA+E E+ E +
Sbjct: 306 GCKG------------------------------------GKVATILLRGATEVELDEAE 329

Query: 229 DRVTDALNATKAAVEE-GIVPGGGVALLYAAKELEKLS-TANFDQKIGVQIIQNALKTPV 286
             + DAL A +AAVE+ GIVPGGG A +  +K LE+L+ T    +++G++   +AL+   
Sbjct: 330 RSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIP 389

Query: 287 HTIAANAGVEGAVVVGKLLE---QDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDA 343
            T+A NAG++   VV KL     +   + G D   GE VDM ++GIIDPLKV R AL  A
Sbjct: 390 RTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSA 449

Query: 344 ASVSSLMTTTEAIVV 358
              +SL+ T + I+V
Sbjct: 450 TEAASLILTIDDIIV 464

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score =  210 bits (536), Expect = 1e-63
 Identities = 112/389 (28%), Positives = 180/389 (46%), Gaps = 88/389 (22%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
              VG  GVI I  G     + E++EG+ LD+GY+SP       +    LE+P IL+ + 
Sbjct: 153 KFDVGNIGVIKIEGGSL--EDSELIEGIVLDKGYLSP-------DMPKRLENPKILLLDC 203

Query: 61  KIS---------------------NLTAVVRVLELALKRQRPLLIVAEDVESEALATLIL 99
            +                          ++ +LE  +     L+I+ + ++  AL  L  
Sbjct: 204 PLEYEKTEKVIISTAEELERLLEAEEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAK 263

Query: 100 NKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKV- 158
           N + A  +V           +K +++ LA  TG  +++     DLE    D LG+  KV 
Sbjct: 264 NGILALRRV-----------KKEDLERLAKATGATVVSSL--DDLEP---DELGSAGKVE 307

Query: 159 --TISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKI 216
              I +D T  ++G                                    LSG VA + +
Sbjct: 308 EREIGEDKTTFIEG-----------------------------------CLSGKVATILL 332

Query: 217 GGASEAEVGEKKDRVTDALNATKAAVE-EGIVPGGGVALLYAAKELEKLS-TANFDQKIG 274
            GA++ E+ E +  + DALNA KAA++ EG+VPGGG A L  ++ L + + + +  +++G
Sbjct: 333 RGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAAELELSRALREYAKSVSGKEQLG 392

Query: 275 VQIIQNALKTPVHTIAANAGVEGAVVVGKLLE--QDNTDLGYDAAKGEYVDMVKSGIIDP 332
           ++    AL+    T+A NAG++   V+ KL    +   +LG DA  GE  DM ++GIIDP
Sbjct: 393 IEAFAEALEVIPRTLAENAGLDPIEVLAKLKAAHKKGNNLGIDADTGEIGDMKEAGIIDP 452

Query: 333 LKVIRTALVDAASVSSLMTTTEAIVVELP 361
           LKV R+AL  A  V+SL+ T + I+   P
Sbjct: 453 LKVKRSALKSAVEVASLILTIDQIIKAKP 481

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily

 Score =  114 bits (289), Expect = 3e-30
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 81/252 (32%)

Query: 1   MEKVGKE------GVITIHDGKT-LYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDP 53
           + KVG +      GVI +         + E+V G+  D+GY SPY           LE+ 
Sbjct: 31  VLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM-------PKRLENA 83

Query: 54  LILVHEKKISNLTAVVRVLELALKRQRPLLIVAED-VESEALATLILNKLRAGIKVCAIK 112
            IL+ +  +                    +++AE  ++  AL  L          + A++
Sbjct: 84  KILLLDCPLEY------------------VVIAEKGIDDLALHYLAKA------GIMAVR 119

Query: 113 APGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAG 172
                  +K +++ +A  TG  +++      LE +  + LGT + V  +K          
Sbjct: 120 R-----VKKEDLERIARATGATIVSS-----LEDLTPEDLGTAELVEETKI-------GE 162

Query: 173 DKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVT 232
           +K +  E C+                          G  A + + GA+E E+ E K  + 
Sbjct: 163 EKLTFIEGCK-------------------------GGKAATILLRGATEVELDEVKRSLH 197

Query: 233 DALNATKAAVEE 244
           DAL A +AAVEE
Sbjct: 198 DALCAVRAAVEE 209

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 52/240 (21%)

Query: 120 RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEE 179
           +K++M+ LA  TG  ++T     +++ +  + LG  + V   K          DK    E
Sbjct: 309 KKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKV-------GDDKMVFVE 356

Query: 180 RCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239
            C+  ++                        V +L + G +E  V E +  + DAL    
Sbjct: 357 GCKNPKA------------------------VTIL-LRGGTEHVVDELERALEDALRVVA 391

Query: 240 AAVEEG-IVPGGGVALLYAAKELEKLSTANFDQKIG------VQIIQNALKTPVHTIAAN 292
            A+E+G +V GGG   +  AK L +     + + +G      V+   +AL+    T+A N
Sbjct: 392 DALEDGKVVAGGGAVEIELAKRLRE-----YARSVGGREQLAVEAFADALEEIPRTLAEN 446

Query: 293 AG---VEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSL 349
           AG   ++  V +    E+ N + G D   GE VDM++ G+I+PL+V + A+  A   +++
Sbjct: 447 AGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATM 506

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 216 IGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKI 273
           I G ++  + + KD + D L A K A+E+  +VPG G   +     L++   +     K+
Sbjct: 334 IKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKL 393

Query: 274 GVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQ---DNTDLGYDAAKGEYVDMVKSGII 330
           GVQ   +AL     T+A N+G++    + KL ++        G D   GE +D    GI 
Sbjct: 394 GVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIW 453

Query: 331 DPLKVIRTALVDAASVSS 348
           D   V R  L  A  ++S
Sbjct: 454 DNYSVKRQILHSATVIAS 471

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 205 AKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEK 263
            K    V +L + G +E  V E +  + DAL+   +A+E+G +V GGG   +  A  L  
Sbjct: 361 CKNPKAVTIL-LRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGAVEIEIALRLRS 419

Query: 264 L-STANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLL---EQDNTDLGYDAAKG 319
                   +++ ++   +AL+     +A NAG++    + +L    E+ N + G +   G
Sbjct: 420 YARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTG 479

Query: 320 EYVDMVKSGIIDPLKVIRTALVDAASVSSL 349
           E  DM++ G+I+PL+V   A+  A   +++
Sbjct: 480 EIEDMLELGVIEPLRVKEQAIKSATEAATM 509

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 201 QERLAKLSG----GVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALL 255
           +++L + SG        + + GAS+  + E +  + DAL      V++  +V GGG + +
Sbjct: 346 EDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEM 405

Query: 256 YAAKELEKLSTANFDQK-IGVQIIQNALKTPVHTIAANAGVEGAVVVGKL---LEQDNTD 311
             AK +E+L+     +K + ++    AL+     IA NAG + A +V +L       NT 
Sbjct: 406 LMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTT 465

Query: 312 LGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 363
            G D  KG   DM + GI +  KV R  L+ A+  + ++   + I+   P++
Sbjct: 466 AGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPRK 517

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517

>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 13/173 (7%)

Query: 201 QERLAKLSGGVA------VLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVA 253
           +++L K SG  A      VL+  GA++  + E +  + DAL      V+E   V GGG A
Sbjct: 346 EDKLLKFSGVKAGEACTIVLR--GATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCA 403

Query: 254 LLYAAKELEKLSTANFDQK-IGVQIIQNALKTPVHTIAANAGVEGAVVVGKL---LEQDN 309
            +  +K ++  +     +K + V+    AL+     +A NAG + + +V +L       N
Sbjct: 404 EMLMSKAVDTEAQNIPGKKALAVEAFARALRQLPTILADNAGFDSSELVAQLRAAHYNGN 463

Query: 310 TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 362
           + +G D  +G   DM + GI++  K+ R  +  A+  + ++   + I+   P+
Sbjct: 464 STMGLDMNEGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIKAAPR 516

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 216 IGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKI 273
           I G ++  + + KD V D L A K A+E+  +VPG G   + A + L++   +     K+
Sbjct: 377 IKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKENKKSVKGKAKL 436

Query: 274 GVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQ---DNTDLGYDAAKGEYVDMVKSGII 330
           GV+   NAL     T+A N+G +    + KL ++       +G D   GE +D    GI 
Sbjct: 437 GVEAFANALLVIPKTLAENSGFDAQDTLVKLEDEHDEGGEVVGVDLNTGEPIDPEIKGIW 496

Query: 331 DPLKVIRTALVDAASVSS 348
           D  +V +  +  A  ++S
Sbjct: 497 DNYRVKKQLIQSATVIAS 514

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 5/151 (3%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           GAS   + E +  + DAL      V++  +V GGG + +  A  +E+L+      + + +
Sbjct: 379 GASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAI 438

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKL---LEQDNTDLGYDAAKGEYVDMVKSGIIDP 332
           +    AL+     IA N G + A +V KL     + N   G D  KG   DM + GI + 
Sbjct: 439 EAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITES 498

Query: 333 LKVIRTALVDAASVSSLMTTTEAIVVELPKE 363
            KV  + L  A   + ++   + I+   P++
Sbjct: 499 YKVKLSQLCSATEAAEMILRVDDIIRCAPRQ 529

Length = 533

>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKEL-EKLSTANFDQKIGV 275
           GAS+  + E +  + DA+   +  +    +VPGGG   +  +  L EK  +    ++   
Sbjct: 333 GASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPY 392

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVV----GKLLEQDNTDLGYDAAKGEYVDMVKSGIID 331
           + + +AL+    T+A N G      +     K  + +N+  G D   G+ VDM + GI D
Sbjct: 393 KAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWD 452

Query: 332 PLKV----IRTALVDAAS 345
           PL V     +TA ++AA 
Sbjct: 453 PLAVKAQTYKTA-IEAAC 469

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480

>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 233 DALNATKAAVEE-GIVPGGGVALLYAAKELEKLS-TANFDQKIGVQIIQNALKTPVHTIA 290
           DAL   +  V++  ++PGGG   +  A +L + + T    ++  V+   +AL+   +T+A
Sbjct: 384 DALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLA 443

Query: 291 ANAGVEGAVVVGKL---LEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTAL 340
            NAG+    +V +L     Q   + G +  KG   ++++  ++ PL V  +A+
Sbjct: 444 ENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAI 496

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 68/322 (21%), Positives = 124/322 (38%), Gaps = 79/322 (24%)

Query: 78  RQRPLLIVAEDVES--EALATLILNKLRAGIKVCAIK------APGFGENRKANMQDLAV 129
           RQR   I  E ++   +A A ++L     GI    +K      A G    +K +++ +A 
Sbjct: 260 RQREADITKERIKKILDAGANVVLTT--GGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAK 317

Query: 130 LTGGDLITEELGMDLEKV-NLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIR 185
            TGG L++    ++ E+  +   LG   +V    I+ D+ +++ G   + S         
Sbjct: 318 ATGGTLVSTLADLEGEETFDASYLGFADEVVQERIADDECILIKGTKKRSS--------- 368

Query: 186 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 245
                                     A + + GA++  + E +  + DAL   K  +E  
Sbjct: 369 --------------------------ASIILRGANDFMLDEMERSLHDALCVVKRTLESN 402

Query: 246 -IVPGGGVALLYAAKELEKLS-TANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGK 303
            +VPGGG      +  LE  + T    +++ +     AL     T+A NA  +   +V K
Sbjct: 403 SVVPGGGAVEAALSIYLENFATTLGSREQLAIAEFAEALLIIPKTLAVNAAKDSTELVAK 462

Query: 304 LL-----EQDNTD------LGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTT 352
           L       Q   +       G D + G+  D  ++G+++P           + V SL   
Sbjct: 463 LRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPA---------VSKVKSLKFA 513

Query: 353 TEAIV--------VELPKEEKE 366
           TEA +        ++L  E+ +
Sbjct: 514 TEAAITILRIDDLIKLNPEQSK 535

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGV 275
           GAS+  + E +  + DA+   +  + E  ++PGGG   +  +  L K ++     Q+   
Sbjct: 374 GASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPY 433

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVV----GKLLEQDNTDLGYDAAKGEYVDMVKSGIID 331
           + + +AL+    T+A N GV     +     K  ++ N   G D   G+ VDM + GI +
Sbjct: 434 RAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWE 493

Query: 332 PLKV----IRTALVDAAS 345
           PL V     +TA +++A 
Sbjct: 494 PLAVKLQTYKTA-IESAC 510

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525

>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 204 LAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEE-GIVPGGGVALLYAAKELE 262
           +      V V+ + G+++  + E +  + DAL   +  V++ G++ GGG   +  A+ L 
Sbjct: 357 IQNAGKTVTVV-VRGSNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIARRLS 415

Query: 263 KLS-TANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLE---QDNTDLGYDAAK 318
           K + T    +   V+   +AL+   +T+A NAG+    VV +L           G    K
Sbjct: 416 KYARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIKVVTELRNRHANGEKTAGISVRK 475

Query: 319 GEYVDMVKSGIIDPLKVIRTALVDA 343
           G   +M++  ++ PL V  +A+  A
Sbjct: 476 GGITNMLEEHVLQPLLVTTSAITLA 500

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
PRK00013	542	groEL chaperonin GroEL; Reviewed	100.0
PRK12849	542	groEL chaperonin GroEL; Reviewed	100.0
PRK12852	545	groEL chaperonin GroEL; Reviewed	100.0
PRK14104	546	chaperonin GroEL; Provisional	100.0
PRK12850	544	groEL chaperonin GroEL; Reviewed	100.0
PRK12851	541	groEL chaperonin GroEL; Reviewed	100.0
PTZ00114	555	Heat shock protein 60; Provisional	100.0
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	100.0
PLN03167	600	Chaperonin-60 beta subunit; Provisional	100.0
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	100.0
CHL00093	529	groEL chaperonin GroEL	100.0
KOG0356	550	consensus Mitochondrial chaperonin, Cpn60/Hsp60p [	100.0
KOG0361	543	consensus Chaperonin complex component, TCP-1 eta	100.0
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	100.0
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	100.0
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	100.0
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	100.0
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	100.0
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	100.0
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	100.0
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	100.0
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	100.0
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	100.0
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	100.0
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	100.0
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	100.0
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	100.0
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	100.0
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	100.0
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	100.0
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	100.0
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	100.0
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	100.0
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	100.0
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	100.0
KOG0363	527	consensus Chaperonin complex component, TCP-1 beta	100.0
KOG0358	534	consensus Chaperonin complex component, TCP-1 delt	100.0
KOG0362	537	consensus Chaperonin complex component, TCP-1 thet	100.0
KOG0364	527	consensus Chaperonin complex component, TCP-1 gamm	100.0
KOG0357	400	consensus Chaperonin complex component, TCP-1 epsi	100.0
KOG0360	545	consensus Chaperonin complex component, TCP-1 alph	100.0
KOG0359	520	consensus Chaperonin complex component, TCP-1 zeta	100.0
cd03334	261	Fab1_TCP TCP-1 like domain of the eukaryotic phosp	99.96
cd03333	209	chaperonin_like chaperonin_like superfamily. Chape	99.95
KOG0230	1598	consensus Phosphatidylinositol-4-phosphate 5-kinas	99.37
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	96.09

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=1.8e-79  Score=634.27  Aligned_cols=375  Identities=59%  Similarity=0.935  Sum_probs=356.9

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      +.+|++|.|.++.+.+..|++++++|++|+++|.+|+|+++++++++.++||+||++|++|++++++.++++++++.|+|
T Consensus       166 ~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~  245 (542)
T PRK00013        166 EKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKP  245 (542)
T ss_pred             HHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCC
Confidence            46788899999887766677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|++.|+++|..|+++++++|++||+|+|++.++++|+|||++||+++++++.+++++++++++||+|+.++++
T Consensus       246 lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~  325 (542)
T PRK00013        246 LLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVT  325 (542)
T ss_pred             EEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999777777999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      +++++||+++++++.+..|+++++.+++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||+++++++
T Consensus       326 ~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~a  405 (542)
T PRK00013        326 KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAA  405 (542)
T ss_pred             cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGE  320 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~  320 (382)
                      +++|+|||||++|+++|..|+++ .+ ++++|+++++|++||+.||++||+|||+|+.+++++|++.|++++|+|+.+|+
T Consensus       406 l~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~  484 (542)
T PRK00013        406 VEEGIVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGE  484 (542)
T ss_pred             HHcCcccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCc
Confidence            99999999999999999999988 44 78999999999999999999999999999999999999988888999999999


Q ss_pred             cccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCC-CCCCCCCC
Q 016809          321 YVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG-GMGGMGGM  377 (382)
Q Consensus       321 i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~~~  377 (382)
                      +.||++.|||||+.||.++|+.|+++|++||+||++|..+|++.+..|. |.||||||
T Consensus       485 ~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~  542 (542)
T PRK00013        485 YVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPMGGGGMGGM  542 (542)
T ss_pred             eeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999887666544 66777766

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=1.9e-79  Score=634.14  Aligned_cols=376  Identities=62%  Similarity=0.979  Sum_probs=358.5

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      .++|++|.|.+++|++++|++++++|++|+++|.+|+|+++.++|++.++||+||++|++|++++++.++++++.+.++|
T Consensus       166 ~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~  245 (542)
T PRK12849        166 EKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKP  245 (542)
T ss_pred             HHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCC
Confidence            45788999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|+|.|+++|..|++++.++|++||+|+|+++++++|+|||++|||++++++.+..++++++++||+|+.|+++
T Consensus       246 lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~  325 (542)
T PRK12849        246 LLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTIT  325 (542)
T ss_pred             EEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999877777999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      +++++++++|++++++..|+++++.+++.+.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||+++++++
T Consensus       326 ~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a  405 (542)
T PRK12849        326 KDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAA  405 (542)
T ss_pred             eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY  321 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i  321 (382)
                      +++|||||||++|+++|..|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.| .++|||+.+|++
T Consensus       406 ~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~  484 (542)
T PRK12849        406 VEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEY  484 (542)
T ss_pred             HHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCcc
Confidence            9999999999999999999999883388999999999999999999999999999999999999877 689999999999


Q ss_pred             ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCC
Q 016809          322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGG  379 (382)
Q Consensus       322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~  379 (382)
                      .||++.|||||+.+|.++|+.|+++|++|||||++|+.+|++..+ |++||||||||-
T Consensus       485 ~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~-~~~~~~~~~~~~  541 (542)
T PRK12849        485 GDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP-PGGMGGMGGMGH  541 (542)
T ss_pred             ccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC-CCCCCCCCCCCC
Confidence            999999999999999999999999999999999999998866544 577777777764

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=1.4e-78  Score=629.30  Aligned_cols=377  Identities=60%  Similarity=0.962  Sum_probs=358.1

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      +++|++|+|.+..|++..+++++++|+.|+++|.+|||++++++|+.+++||+||++|++|+++++++++++++.++++|
T Consensus       167 ~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~  246 (545)
T PRK12852        167 QKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKP  246 (545)
T ss_pred             HHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcC
Confidence            46899999999999998777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|+++|+++|..|++++.++|+|||+|+||++++++|+|||++|||++++++.+.+++++++++||+|+.++++
T Consensus       247 lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~  326 (545)
T PRK12852        247 LLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVID  326 (545)
T ss_pred             EEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999777777999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      ++++++++++++++.++.|+++++.+++++.++|++++|++|++||+++++||+|||+|+.+++|++|+++||+|+++++
T Consensus       327 ~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a  406 (545)
T PRK12852        327 KENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAA  406 (545)
T ss_pred             ccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY  321 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i  321 (382)
                      +++|||||||++|+++++.|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.|++++|||+.+|++
T Consensus       407 ~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~  486 (545)
T PRK12852        407 VQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEY  486 (545)
T ss_pred             HhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCc
Confidence            99999999999999999999998766778999999999999999999999999999999999999888899999999999


Q ss_pred             ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCC-CCCCCCCCC
Q 016809          322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG-GMGGMGGMG  378 (382)
Q Consensus       322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~~~~  378 (382)
                      +||++.|||||+.||.++|+.|+|+|++|||||++|..+|++...++. ++|+|||||
T Consensus       487 ~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~  544 (545)
T PRK12852        487 VDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMPAGGGMGGMG  544 (545)
T ss_pred             ccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999998877655533 444555554

>PRK14104 chaperonin GroEL; Provisional

Probab=100.00  E-value=4.7e-78  Score=624.16  Aligned_cols=380  Identities=58%  Similarity=0.946  Sum_probs=363.3

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      +++|.+|+|.+..+++++|++++++|++|+++|.+|||+++++.++.++++|+||++|.+++++++++++++++.+.++|
T Consensus       167 ~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~  246 (546)
T PRK14104        167 KKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKP  246 (546)
T ss_pred             HHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcC
Confidence            57899999999999988778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|+++|+++|..|++++.++|+|||+|+||+.++++|+|||++|||++++++.+..++++++++||+|++++++
T Consensus       247 lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~  326 (546)
T PRK14104        247 LVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMID  326 (546)
T ss_pred             EEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEc
Confidence            99999999999999999999999899999999999999999999999999999999988888999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      +++++++++|++++.++.|+++++.+++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||+++++++
T Consensus       327 ~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~a  406 (546)
T PRK14104        327 KENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAA  406 (546)
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY  321 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i  321 (382)
                      +++|||||||++|++++..|+++...++++++++++|++||+.||++||+|||+|+.+++.+|++.|.+++|+|+.+|++
T Consensus       407 i~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~  486 (546)
T PRK14104        407 VEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEY  486 (546)
T ss_pred             HHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCce
Confidence            99999999999999999999988544789999999999999999999999999999999999988777789999999999


Q ss_pred             ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCCCCC
Q 016809          322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY  382 (382)
Q Consensus       322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~  382 (382)
                      .||++.|||||+.||.++|++|+++|++|||||++|..+|++....| .|+.|||||+|||
T Consensus       487 ~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~-~~~~~~~~~~~~~  546 (546)
T PRK14104        487 GNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGP-AMPPGGGMGGMDF  546 (546)
T ss_pred             eehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCC-CCCCCCCCCCCCC
Confidence            99999999999999999999999999999999999998887665544 6667789999997

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=3.8e-77  Score=617.65  Aligned_cols=378  Identities=62%  Similarity=0.970  Sum_probs=354.1

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      ..+|++|.|.+..+....|++++++|++|+++|.+|+|+++.++++.+++||+||++|++|++.+++.+++++++++|+|
T Consensus       167 ~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~  246 (544)
T PRK12850        167 DKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRP  246 (544)
T ss_pred             HHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCC
Confidence            45788999999888777778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|+|+++++|..|++++.++++|||+|+|+++++++|+|||++||+++++++.+++++++++++||+|++|+++
T Consensus       247 lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~  326 (544)
T PRK12850        247 LLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLIT  326 (544)
T ss_pred             EEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999766667999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      ++++++|++|++++++..|+.+++.+++.+.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||+++++++
T Consensus       327 ~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a  406 (544)
T PRK12850        327 KENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAA  406 (544)
T ss_pred             eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY  321 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i  321 (382)
                      +++|||||||++|++++..|+++...++++|+++++|++||+.||++||+|||+|+.+++++|++.| .++|+|+.+|++
T Consensus       407 ~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~  485 (544)
T PRK12850        407 VEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEY  485 (544)
T ss_pred             HhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcc
Confidence            9999999999999999999998833378999999999999999999999999999999999999876 579999999999


Q ss_pred             ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCCCCC
Q 016809          322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY  382 (382)
Q Consensus       322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~  382 (382)
                      .||++.|||||+.||.++|+.|+++|++|||||++|..+|++.|++ + .|..||||||-|
T Consensus       486 ~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~-~-~~~~~~~~~~~~  544 (544)
T PRK12850        486 GDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAA-A-AGPGPGMGGMGY  544 (544)
T ss_pred             cchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCCC-C-CCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999988775555 3 222344555444

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=4.8e-76  Score=609.06  Aligned_cols=375  Identities=62%  Similarity=0.960  Sum_probs=353.6

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      +++|++|.|.+..+....+++++++|++|+++|.+|+|+++.++|+++++||+||++|+++++.+++.++++++.++++|
T Consensus       167 ~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~  246 (541)
T PRK12851        167 EKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKP  246 (541)
T ss_pred             HHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcC
Confidence            46788999888877666677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|++.++++|..|++++.++|+|||+|+||++++++|+|||++|||++++++.+++++++++++||+|+.|+++
T Consensus       247 lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~  326 (541)
T PRK12851        247 LLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVE  326 (541)
T ss_pred             EEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999776667999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      +++|+++++|++++++..|+++++.+++.+.+++++++|++|++||+|+++||+|||+|+.+++|++|+++||+++++++
T Consensus       327 ~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a  406 (541)
T PRK12851        327 KENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAA  406 (541)
T ss_pred             cceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY  321 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i  321 (382)
                      +++|||||||++|+++|..|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.| .++|+|+.+|++
T Consensus       407 l~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~  485 (541)
T PRK12851        407 VEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEY  485 (541)
T ss_pred             HHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCc
Confidence            9999999999999999999998876678999999999999999999999999999999999999887 479999999999


Q ss_pred             ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCCCCC
Q 016809          322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY  382 (382)
Q Consensus       322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~  382 (382)
                      +||++.|||||+.||.++|+.|+|+|++|||||++|+.+|++.|++|-.|||     ||||
T Consensus       486 ~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~~-----~~~~  541 (541)
T PRK12851        486 GDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGG-----GMDF  541 (541)
T ss_pred             cchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCCCCc-----ccCC
Confidence            9999999999999999999999999999999999999998776655333322     6665

>PTZ00114 Heat shock protein 60; Provisional

Probab=100.00  E-value=5.7e-75  Score=603.09  Aligned_cols=362  Identities=66%  Similarity=1.025  Sum_probs=348.4

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      +++|++|+|.+++|++++|++++++|++|+++|.+|+|+++.++|+++++||+||++|++|+++++++++++++++.++|
T Consensus       178 ~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~  257 (555)
T PTZ00114        178 DKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRP  257 (555)
T ss_pred             HHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCC
Confidence            46899999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccC-CCCccccCCcCCCceeeEEEE
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE-LGMDLEKVNLDMLGTCKKVTI  160 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~-~~~~l~~l~~~~lG~~~~v~i  160 (382)
                      |||++++|+++|+++|..|++++.++|++||+|++|++++++|+|||++||++++++. .+..++++++++||+|++|++
T Consensus       258 llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~  337 (555)
T PTZ00114        258 LLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTV  337 (555)
T ss_pred             EEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEE
Confidence            9999999999999999999999999999999999999999999999999999999996 666778899999999999999


Q ss_pred             ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHH
Q 016809          161 SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA  240 (382)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~  240 (382)
                      +++++++++++++++.|+.|+.+++.+++.+.+++++++|++|++||+++++||+|||+|+.+++|++|+++||++++++
T Consensus       338 ~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~  417 (555)
T PTZ00114        338 TKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRA  417 (555)
T ss_pred             EeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCccccchHHHHHHHHHHHHhcc--C-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCC
Q 016809          241 AVEEGIVPGGGVALLYAAKELEKLST--A-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAA  317 (382)
Q Consensus       241 a~~~gvvpGGGa~e~~ls~~L~~~~~--~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~  317 (382)
                      ++++|||||||++|+++|..|++++.  . ++++|+++++|++||+.||++||+|||+|+.+++++|++..++++|||+.
T Consensus       418 a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~  497 (555)
T PTZ00114        418 AVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQ  497 (555)
T ss_pred             HHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCC
Confidence            99989999999999999999998875  3 68999999999999999999999999999999999998744678999999


Q ss_pred             CCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016809          318 KGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE  363 (382)
Q Consensus       318 ~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~  363 (382)
                      +|++.||++.|||||+.||.++|+.|+++|++||+||++|...|++
T Consensus       498 ~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~  543 (555)
T PTZ00114        498 TGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE  543 (555)
T ss_pred             CCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence            9999999999999999999999999999999999999999998776

>cd03344 GroEL GroEL_like type I chaperonin

Probab=100.00  E-value=1.8e-74  Score=595.19  Aligned_cols=356  Identities=64%  Similarity=1.007  Sum_probs=344.7

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      .++|.+|.|.+.+|++++|++++++|++|+++|.+|+|++++++|+++++||+||++|+++++++++.++++++.+.|+|
T Consensus       164 ~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~  243 (520)
T cd03344         164 EKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRP  243 (520)
T ss_pred             HHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence            45788999999999999998899999999999999999999888999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|+++++++|..|++++.++|++||+|+++++++++|+|||++|||++++++.+++++++++++||+|+.++++
T Consensus       244 lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~  323 (520)
T cd03344         244 LLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVT  323 (520)
T ss_pred             EEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999776767999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      +++++|+++++++++++.|+++++.+++++.++|++++|+||++||+|++|||+|||+|+.+++|++|+++||+++++++
T Consensus       324 ~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a  403 (520)
T cd03344         324 KDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAA  403 (520)
T ss_pred             eceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY  321 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i  321 (382)
                      +++|+|||||++|+++|+.|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.|+ ++|||+.+|++
T Consensus       404 ~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~  482 (520)
T cd03344         404 VEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEY  482 (520)
T ss_pred             HhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcc
Confidence            99999999999999999999998766789999999999999999999999999999999999999887 89999999999


Q ss_pred             ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016809          322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV  358 (382)
Q Consensus       322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~  358 (382)
                      .||++.|||||+.||.++|+.|+++|++||+||.+|.
T Consensus       483 ~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~  519 (520)
T cd03344         483 VDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV  519 (520)
T ss_pred             cchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence            9999999999999999999999999999999999885

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=100.00  E-value=3.5e-74  Score=599.12  Aligned_cols=365  Identities=49%  Similarity=0.806  Sum_probs=348.3

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      ++||++|+|.+++|++++|++++++|++|+++|.+|||++++++|+++++||+||++|++|++++++.++++++.+.++|
T Consensus       221 ~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~  300 (600)
T PLN03167        221 SKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYP  300 (600)
T ss_pred             HHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcC
Confidence            57899999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|++++|++|+.|++++.++|++||+|+||+.++++|+|||++||+++++++.++.++++++++||+|++|++.
T Consensus       301 lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~  380 (600)
T PLN03167        301 LLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLT  380 (600)
T ss_pred             EEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999877777999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      ++.++++++.++++.++.|+.+++.+++.+.++|++++|++|+++|+|++++|+|||+|+.+++|++|+++||++++|+|
T Consensus       381 ~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~a  460 (600)
T PLN03167        381 KDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA  460 (600)
T ss_pred             cccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccC-ChhhH-HHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCC
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTA-NFDQK-IGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKG  319 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~-~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~  319 (382)
                      +++|+|||||++|++++..|++++.. ++++| .++++|++||+.||++||+|||+|+.+++++|++.+++++|||+.+|
T Consensus       461 i~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g  540 (600)
T PLN03167        461 VEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATG  540 (600)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCC
Confidence            99999999999999999999988765 55555 56999999999999999999999999999999866778899999999


Q ss_pred             ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCC
Q 016809          320 EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKE  366 (382)
Q Consensus       320 ~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~  366 (382)
                      ++.||++.|||||+.||+++|+.|+++|++||+||++|..+|..+++
T Consensus       541 ~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~~  587 (600)
T PLN03167        541 KYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPV  587 (600)
T ss_pred             cCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence            99999999999999999999999999999999999999998766554

>TIGR02348 GroEL chaperonin GroL

Probab=100.00  E-value=1.5e-73  Score=589.14  Aligned_cols=358  Identities=59%  Similarity=0.938  Sum_probs=343.5

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      .++|++|.|.+..|++..|++++++|++|+++|.+|+|+++.+++++.++||+||++|++|++++++.++++++++.|+|
T Consensus       165 ~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~  244 (524)
T TIGR02348       165 EKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKP  244 (524)
T ss_pred             HHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcC
Confidence            46889999999999998888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|+++|+++|..|+++++++|++||+|+|++.++++|+|||++||+++++.+.+++++++++++||+|+.++++
T Consensus       245 lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~  324 (524)
T TIGR02348       245 LLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVD  324 (524)
T ss_pred             EEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999776777999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      ++++++++++++++.+..|+.+++.+++.+.+++++++|++|++||+|+++||+|||+|+.+++|++|+++||++++|++
T Consensus       325 ~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a  404 (524)
T TIGR02348       325 KDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAA  404 (524)
T ss_pred             ecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGE  320 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~  320 (382)
                      +++|||||||++|+++|..|++ ..+ ++++++++++|++||+.||++||+|||+|+.+++++|++. +.++|||+.+|+
T Consensus       405 ~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~  482 (524)
T TIGR02348       405 VEEGIVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGE  482 (524)
T ss_pred             HhcCCccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCc
Confidence            9999999999999999999998 444 7899999999999999999999999999999999999876 446999999999


Q ss_pred             cccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016809          321 YVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP  361 (382)
Q Consensus       321 i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~  361 (382)
                      +.||++.|||||+.||.++|+.|+++|++|||||++|...|
T Consensus       483 ~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~  523 (524)
T TIGR02348       483 YEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP  523 (524)
T ss_pred             ccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence            99999999999999999999999999999999999997654

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>CHL00093 groEL chaperonin GroEL

Probab=100.00  E-value=1.5e-72  Score=582.28  Aligned_cols=359  Identities=50%  Similarity=0.852  Sum_probs=342.0

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCH-HHHHHHHHHHHHcCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL-TAVVRVLELALKRQR   80 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~-~~l~~~le~i~~~~~   80 (382)
                      +++|++|.|.+..|+..++++++++|++|+++|.+|||++++++|+.+++||+||++|++|+.. .+++++++++.+.++
T Consensus       166 ~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~  245 (529)
T CHL00093        166 EKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKR  245 (529)
T ss_pred             HHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCC
Confidence            4689999999988887778889999999999999999999999999999999999999999987 789999999999999


Q ss_pred             CEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEE
Q 016809           81 PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTI  160 (382)
Q Consensus        81 ~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i  160 (382)
                      ||||++++|+++++++|+.|+.+++++|+|||+|+++++++++|+|||++|||++++++.+.+++++++++||+|+.+++
T Consensus       246 ~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~  325 (529)
T CHL00093        246 PLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIV  325 (529)
T ss_pred             CEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEE
Confidence            99999999999999999999988888999999999999999999999999999999987777799999999999999999


Q ss_pred             ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHH
Q 016809          161 SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA  240 (382)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~  240 (382)
                      +++++++++ .++++++..||++++.+++.+.++|++++|++|+++|+|+++||+|||+|+.+++|++|+++||++++|+
T Consensus       326 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~  404 (529)
T CHL00093        326 TKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKA  404 (529)
T ss_pred             ecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999998 5678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCccccchHHHHHHHHHHHHhcc-C-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCC
Q 016809          241 AVEEGIVPGGGVALLYAAKELEKLST-A-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAK  318 (382)
Q Consensus       241 a~~~gvvpGGGa~e~~ls~~L~~~~~-~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~  318 (382)
                      ++++|+|||||++|++||+.|++++. . ++++|+++++|++||+.||++||+|||+|+.++++++++. +.++|||+.+
T Consensus       405 a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~  483 (529)
T CHL00093        405 AVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAAN  483 (529)
T ss_pred             HHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCC
Confidence            99999999999999999999999875 4 7899999999999999999999999999999999999875 4689999999


Q ss_pred             CccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCc
Q 016809          319 GEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK  362 (382)
Q Consensus       319 ~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~  362 (382)
                      |+++||++.|||||+.||.++|+.|+|+|++|||||++|+.+|+
T Consensus       484 g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~  527 (529)
T CHL00093        484 NKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE  527 (529)
T ss_pred             CcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999998763

>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.4e-65  Score=501.09  Aligned_cols=361  Identities=64%  Similarity=1.000  Sum_probs=350.3

Q ss_pred             CcccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCC
Q 016809            1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQR   80 (382)
Q Consensus         1 ~~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~   80 (382)
                      +++||++|+|.++.|.++.|++++++||.|++||++|||+++++.+..+|++|++|+++.+|++++++.|.++...+...
T Consensus       179 ~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~  258 (550)
T KOG0356|consen  179 MKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRR  258 (550)
T ss_pred             HHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCC-CccccCCcCCCceeeEEE
Q 016809           81 PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELG-MDLEKVNLDMLGTCKKVT  159 (382)
Q Consensus        81 ~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~-~~l~~l~~~~lG~~~~v~  159 (382)
                      ||||++++|+.++|.+|+.|++++.+++||||+|+||+.++..+.|++.+||+.++..+.+ ++++..++++||.|.++.
T Consensus       259 PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evv  338 (550)
T KOG0356|consen  259 PLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVV  338 (550)
T ss_pred             ceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEE
Confidence            9999999999999999999999999999999999999999999999999999999999877 789999999999999999


Q ss_pred             EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHH
Q 016809          160 ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK  239 (382)
Q Consensus       160 i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~  239 (382)
                      ++++.++++.+..+.++++.||++++..++...+.|+++++++|+++|+|++++|.++|.|+.|++|++.+++||||+++
T Consensus       339 vtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~  418 (550)
T KOG0356|consen  339 VTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATR  418 (550)
T ss_pred             EecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHH
Confidence            99999999999899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCC
Q 016809          240 AAVEEGIVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAK  318 (382)
Q Consensus       240 ~a~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~  318 (382)
                      +|+++|+|||||+++++|+..|..+... +..++.+++++.+||..|..+++.|||.|+..++.|++.   ..+|||..+
T Consensus       419 aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~  495 (550)
T KOG0356|consen  419 AAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---DDYGYDAAK  495 (550)
T ss_pred             HHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---hhhhhhhhc
Confidence            9999999999999999999999987764 678899999999999999999999999999999999984   489999999


Q ss_pred             CccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccC
Q 016809          319 GEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEE  364 (382)
Q Consensus       319 ~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~  364 (382)
                      ++++||++.||+||+.|...+|..|..+|+++++++.+|...|+++
T Consensus       496 ~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~  541 (550)
T KOG0356|consen  496 GEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE  541 (550)
T ss_pred             ccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence            9999999999999999999999999999999999999999999888

>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-60  Score=453.04  Aligned_cols=313  Identities=18%  Similarity=0.293  Sum_probs=286.0

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHH-------
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVV-------   69 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~-------   69 (382)
                      |.+.+||+++|| .+++|+.|++.|.+.+|    +++|+++.||+|++++.+             ++++++++       
T Consensus       197 IKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW  271 (543)
T KOG0361|consen  197 IKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEW  271 (543)
T ss_pred             eeecCCCccchh-hhccceeeeehccccch----hhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHH
Confidence            578899999997 79999999999999876    688999999999999986             44666654       


Q ss_pred             ----HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           70 ----RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        70 ----~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                          +.|++|..+|.|||++.-.|.|.|.|||+++++     .||      |+++.+||.|+..+||++++++     ..
T Consensus       272 ~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi-----FCA------GRV~~eDl~Rv~~acGGsi~tt-----~~  335 (543)
T KOG0361|consen  272 NIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI-----FCA------GRVPEEDLNRVMQACGGSIQTT-----VS  335 (543)
T ss_pred             HHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-----eec------CcCCHHHHHHHHHhcCcchhhh-----hh
Confidence                567899999999999999999999999999986     455      5778999999999999999998     89


Q ss_pred             cCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016809          146 KVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA  222 (382)
Q Consensus       146 ~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~  222 (382)
                      ++.++.||.|..++   +.+++|-+|+||+.                                   .++||++|||+-++
T Consensus       336 ~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~-----------------------------------aktcTliLRGgaeq  380 (543)
T KOG0361|consen  336 DIKEEVLGTCALFEERQVGGERYNLFEGCPK-----------------------------------AKTCTLILRGGAEQ  380 (543)
T ss_pred             hcchhhcchhhhHHHHhhcchhhhhhcCCCc-----------------------------------cceeEEEEeccHHH
Confidence            99999999999998   45789999999985                                   35899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016809          223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV  300 (382)
Q Consensus       223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v  300 (382)
                      +++|.+|++|||++++|.|+++. ||+|||++||++|+.|++|+.+ .+++|+-+.+|++|||.||++||+|||+|..++
T Consensus       381 fieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~i  460 (543)
T KOG0361|consen  381 FIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNI  460 (543)
T ss_pred             HHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHH
Confidence            99999999999999999999998 9999999999999999999998 899999999999999999999999999999999


Q ss_pred             HHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCC-CCCCCCC
Q 016809          301 VGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG-GMGGMGG  376 (382)
Q Consensus       301 i~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~~  376 (382)
                      +++|+..|   ..|+|+|.+++.+.|+++.+||||..||++++..|+|+||+||++|+.|.+++++.++|.+ ++|-|+|
T Consensus       461 lnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~~a~rgrg~g  540 (543)
T KOG0361|consen  461 LNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPPSAAGRGRGRG  540 (543)
T ss_pred             HHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCCccccCCCCC
Confidence            99999988   5899999999999999999999999999999999999999999999999999988887644 4444445


Q ss_pred             CC
Q 016809          377 MG  378 (382)
Q Consensus       377 ~~  378 (382)
                      |+
T Consensus       541 ~p  542 (543)
T KOG0361|consen  541 RP  542 (543)
T ss_pred             CC
Confidence            44

>cd03343 cpn60 cpn60 chaperonin family

Probab=100.00  E-value=4.8e-59  Score=482.17  Aligned_cols=291  Identities=23%  Similarity=0.412  Sum_probs=267.4

Q ss_pred             EEE--EeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHHHH---
Q 016809           10 ITI--HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVRV---   71 (382)
Q Consensus        10 i~~--~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~~~---   71 (382)
                      |.+  .+|++++|+ ++++|++|+++|.+|+       |++.++||+|++++++             +++++++.++   
T Consensus       192 I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~-------m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~  263 (517)
T cd03343         192 IKIEKKTGGSVDDT-ELIRGIVIDKEVVHPG-------MPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQ  263 (517)
T ss_pred             eeEEeecCcCHHHc-ceeeeEEEeccCCCCC-------CccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHH
Confidence            555  899999975 8999999999999987       5778899999999999             4777777654   


Q ss_pred             --------HHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc
Q 016809           72 --------LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD  143 (382)
Q Consensus        72 --------le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~  143 (382)
                              ++++++.|+||||++++|++.++++|.+++      +++|+     ++++++|+|||++|||+++++     
T Consensus       264 E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~g------I~~v~-----~v~~~~l~~Ia~~tGa~ii~~-----  327 (517)
T cd03343         264 EEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAG------ILAVR-----RVKKSDMEKLARATGAKIVTN-----  327 (517)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------cEEEE-----eCCHHHHHHHHHHhCCEEecc-----
Confidence                    458999999999999999999999998877      57887     456899999999999999998     


Q ss_pred             cccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016809          144 LEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS  220 (382)
Q Consensus       144 l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t  220 (382)
                      ++++++++||+|++|++.   +++|++|++|+++                                   ..+||+|||+|
T Consensus       328 ~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t  372 (517)
T cd03343         328 IDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP-----------------------------------KAVTILLRGGT  372 (517)
T ss_pred             hhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-----------------------------------ceEEEEEECCc
Confidence            999999999999999987   6789999988753                                   37899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      +.+++|++|+++||++++|+++++| ||||||++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.
T Consensus       373 ~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~  452 (517)
T cd03343         373 EHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPI  452 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            9999999999999999999999999 9999999999999999998766 7899999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016809          299 VVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE  359 (382)
Q Consensus       299 ~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~  359 (382)
                      +++.+|++.|   +.++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|+.
T Consensus       453 ~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  516 (517)
T cd03343         453 DTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA  516 (517)
T ss_pred             HHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence            9999998765   367999999999999999999999999999999999999999999999975

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=100.00  E-value=7.6e-59  Score=480.63  Aligned_cols=290  Identities=21%  Similarity=0.381  Sum_probs=267.6

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHHHHHH---
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVRVLE---   73 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~~~le---   73 (382)
                      |.+.+|++++|+ ++++|++|+++|.+|.       |++.++||+|++++++             |++++++.++++   
T Consensus       197 i~k~~Ggs~~ds-~lv~G~vi~~~~~~~~-------m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~  268 (519)
T TIGR02339       197 IEKKTGGSIDDT-ELVEGIVVDKEPVHPG-------MPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEE  268 (519)
T ss_pred             EEEccCcChhcc-eeEeeEEEecCCCCCC-------CccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHH
Confidence            456899999975 9999999999999884       7888999999999998             678888777665   


Q ss_pred             --------HHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           74 --------LALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        74 --------~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                              ++++.|+||||++++|++.++++|.+++      +++|+     ++++++|+|||++|||+++++     ++
T Consensus       269 ~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~g------I~~v~-----~v~~~~L~rIa~~tGa~ii~~-----~~  332 (519)
T TIGR02339       269 AMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAG------ILAVR-----RVKKSDIEKLARATGAKIVSS-----IK  332 (519)
T ss_pred             HHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCC------CEEEe-----cCCHHHHHHHHHHhCCEEeCc-----hh
Confidence                    8999999999999999999999998887      57777     556899999999999999999     88


Q ss_pred             cCCcCCCceeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016809          146 KVNLDMLGTCKKVTISK---DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA  222 (382)
Q Consensus       146 ~l~~~~lG~~~~v~i~~---~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~  222 (382)
                      +++++.||+|++|++.+   ++|++|++|+++                                   ..+||+|||+|+.
T Consensus       333 ~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~  377 (519)
T TIGR02339       333 EITESDLGYAGLVEERKVGDDKMTFVEGCKNP-----------------------------------KAVTILLRGGTEH  377 (519)
T ss_pred             hCChhhccCCceEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEEECCCHH
Confidence            99999999999999875   889999988653                                   4789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016809          223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV  300 (382)
Q Consensus       223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v  300 (382)
                      +++|.+|+++||++++++++++| ||||||++|++||..|++++.. ++++++++++|++||+.||++||+|||+|+.++
T Consensus       378 ~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~  457 (519)
T TIGR02339       378 VVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDA  457 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            99999999999999999999999 9999999999999999998766 789999999999999999999999999999999


Q ss_pred             HHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016809          301 VGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV  358 (382)
Q Consensus       301 i~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~  358 (382)
                      +.+|++.|   +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus       458 l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  518 (519)
T TIGR02339       458 LVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA  518 (519)
T ss_pred             HHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence            99998765   36799999999999999999999999999999999999999999999985

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=100.00  E-value=1.2e-58  Score=479.83  Aligned_cols=296  Identities=19%  Similarity=0.286  Sum_probs=265.5

Q ss_pred             EEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC-------------HHH-----------
Q 016809           12 IHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTA-----------   67 (382)
Q Consensus        12 ~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~-------------~~~-----------   67 (382)
                      +.+|+++.|+ ++++|++|+++|.++.       |++.++||+|++++++++.             +++           
T Consensus       191 ~~~Ggs~~~s-~li~Givi~~~~~~~~-------m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~  262 (527)
T cd03335         191 KAHGKSAKES-YLVNGYALNCTRASQG-------MPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDI  262 (527)
T ss_pred             EecCcChhhc-ceeeeEEEecccCCCC-------CcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHH
Confidence            7799999975 9999999999999874       7889999999999999753             232           


Q ss_pred             HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCC-cccc
Q 016809           68 VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM-DLEK  146 (382)
Q Consensus        68 l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~-~l~~  146 (382)
                      +.++++++++.|++|||++++|++.++++|.+++      |++++     ++++++|+|||++|||+++++..++ ..++
T Consensus       263 l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~------I~~v~-----~v~~~~lerIa~~tGa~ii~~~~~l~~~~~  331 (527)
T cd03335         263 TKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RVKKEDLRRIAKATGATLVSTLANLEGEET  331 (527)
T ss_pred             HHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHhCCEEecChhhcCcccc
Confidence            3366788999999999999999999999999988      68888     5568999999999999999984333 2234


Q ss_pred             CCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhH
Q 016809          147 VNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAE  223 (382)
Q Consensus       147 l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~  223 (382)
                      +++++||+|+.|+   +++++|++|++|++                                   +++|||+|||+|+.+
T Consensus       332 ~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~-----------------------------------~~~~TIllrG~t~~~  376 (527)
T cd03335         332 FDPSYLGEAEEVVQERIGDDELILIKGTKK-----------------------------------RSSASIILRGANDFM  376 (527)
T ss_pred             cCHhhCccCceEEEEEECCeEEEEEEcCCC-----------------------------------CCEEEEEEeCCcHHH
Confidence            5667899999999   56789999998875                                   368999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHH
Q 016809          224 VGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVV  301 (382)
Q Consensus       224 l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi  301 (382)
                      ++|.+|+++||++++++++++| +|||||++|++|+..|++++.. ++++++++++|++||+.||++||+|||+|+.+++
T Consensus       377 l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~  456 (527)
T cd03335         377 LDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELV  456 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence            9999999999999999999999 9999999999999999998766 7899999999999999999999999999999999


Q ss_pred             HHHHhcC-----------CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016809          302 GKLLEQD-----------NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP  361 (382)
Q Consensus       302 ~~l~~~~-----------~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~  361 (382)
                      .+|++.|           ++++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++|||||++|..+|
T Consensus       457 ~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~  527 (527)
T cd03335         457 AKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP  527 (527)
T ss_pred             HHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence            9998865           34699999999999999999999999999999999999999999999998755

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=100.00  E-value=2.7e-58  Score=477.12  Aligned_cols=290  Identities=20%  Similarity=0.322  Sum_probs=263.7

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHH---------
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTA---------   67 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~---------   67 (382)
                      |.+.+|++++|+ ++++|++|+++|.+++       |++.++||+|++++++             ++++++         
T Consensus       202 i~ki~Ggs~~dS-~~v~Givi~~~~~~~~-------m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~  273 (526)
T cd03339         202 VEGKVGGRLEDT-KLVKGIVIDKDFSHPQ-------MPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQ  273 (526)
T ss_pred             EEEecCcCHHHc-ceeeeEEEecccCCCC-------CCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHH
Confidence            456799999986 8999999999999997       5667789999998875             445655         


Q ss_pred             --HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           68 --VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        68 --l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                        +.++++++++.|+||||++++|+|.|+++|.+|+      +.||+++     ++++|+|||++|||+++++     ++
T Consensus       274 ~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~  337 (526)
T cd03339         274 KYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRWV-----GGVEIELIAIATGGRIVPR-----FE  337 (526)
T ss_pred             HHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEeC-----CHHHHHHHHHHhCCEEecc-----hh
Confidence              5677899999999999999999999999999998      5789864     4778999999999999999     99


Q ss_pred             cCCcCCCceeeEEEEe-----cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016809          146 KVNLDMLGTCKKVTIS-----KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS  220 (382)
Q Consensus       146 ~l~~~~lG~~~~v~i~-----~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t  220 (382)
                      ++++++||+|+.|+..     +++++||++|+++                                   +++||+|||+|
T Consensus       338 ~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~-----------------------------------~~~TIllrG~t  382 (526)
T cd03339         338 DLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS-----------------------------------KAVTIFIRGGN  382 (526)
T ss_pred             hCChhhcccCceEEEEEecCCCcEEEEEECCCCC-----------------------------------CEEEEEEECCC
Confidence            9999999999999843     3688899988753                                   58999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      +.+++|++|+++||++++++++++| +|||||++|++++..|++++.. ++++++++++|++||++||++||+|||+|+.
T Consensus       383 ~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~  462 (526)
T cd03339         383 KMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPI  462 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999999999999999999 9999999999999999998766 7889999999999999999999999999999


Q ss_pred             HHHHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016809          299 VVVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV  358 (382)
Q Consensus       299 ~vi~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~  358 (382)
                      +++++|++.|    +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|.
T Consensus       463 ~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~  526 (526)
T cd03339         463 ETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV  526 (526)
T ss_pred             HHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence            9999998766    34699999999999999999999999999999999999999999999873

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=100.00  E-value=4.7e-58  Score=474.59  Aligned_cols=293  Identities=22%  Similarity=0.341  Sum_probs=264.1

Q ss_pred             EEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC-------------HHH-----------
Q 016809           12 IHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTA-----------   67 (382)
Q Consensus        12 ~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~-------------~~~-----------   67 (382)
                      +.+|++..|+ ++++|++|+++|.+|+       |+++++||+|++++++++.             +++           
T Consensus       195 k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~  266 (531)
T TIGR02347       195 EMKHKSATDT-TLIRGLVLDHGARHPD-------MPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKF  266 (531)
T ss_pred             EecCCCcccc-EEEeeEEEecCcCCCC-------CceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHH
Confidence            4678888875 9999999999999987       5788999999999999653             223           


Q ss_pred             HHHHHHHHHHcCC-------C---EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEec
Q 016809           68 VVRVLELALKRQR-------P---LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLIT  137 (382)
Q Consensus        68 l~~~le~i~~~~~-------~---lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~  137 (382)
                      +..++++|++.+.       +   ||+++++|+|.++++|.+++      |+++++     +++++|+|||++|||++++
T Consensus       267 l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~------I~~i~r-----v~~~~le~ia~~tGa~~i~  335 (531)
T TIGR02347       267 VDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEG------IMALRR-----AKRRNMERLTLACGGEALN  335 (531)
T ss_pred             HHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCC------ceEEcc-----CCHHHHHHHHHHhCCEEec
Confidence            3355677877651       4   89999999999999999988      788884     4588999999999999999


Q ss_pred             cCCCCccccCCcCCCceeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEE
Q 016809          138 EELGMDLEKVNLDMLGTCKKV---TISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVL  214 (382)
Q Consensus       138 ~~~~~~l~~l~~~~lG~~~~v---~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI  214 (382)
                      +     ++++++++||+|++|   ++++++|++|++|+++                                   .+|||
T Consensus       336 ~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~TI  375 (531)
T TIGR02347       336 S-----VEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP-----------------------------------KSCTI  375 (531)
T ss_pred             c-----cccCCccccccceEEEEEEECCeEEEEEEcCCCC-----------------------------------CeEEE
Confidence            9     999999999999999   4667899999988753                                   48999


Q ss_pred             EecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHH
Q 016809          215 KIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAAN  292 (382)
Q Consensus       215 ~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~N  292 (382)
                      +|||+|+.+++|++|+++||++++++++++| +|||||++|++||..|++++.. ++++|+++++|++||+.||++||+|
T Consensus       376 ~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~N  455 (531)
T TIGR02347       376 LIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAEN  455 (531)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999 9999999999999999998766 7899999999999999999999999


Q ss_pred             cCCCHHHHHHHHHhcCC---CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016809          293 AGVEGAVVVGKLLEQDN---TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE  363 (382)
Q Consensus       293 aG~d~~~vi~~l~~~~~---~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~  363 (382)
                      ||+|+.+++.+|++.|+   .++|+|+.+|+++||++.|||||+.+|+++|++|+|+|++|||||++|+.+|+.
T Consensus       456 aG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~  529 (531)
T TIGR02347       456 SGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSM  529 (531)
T ss_pred             cCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcccc
Confidence            99999999999988774   579999999999999999999999999999999999999999999999987654

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=100.00  E-value=9e-59  Score=475.81  Aligned_cols=287  Identities=23%  Similarity=0.331  Sum_probs=259.4

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDV   89 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i   89 (382)
                      |.+.+|+++.|+ ++++|++|+++|.+|+       |+++++||+|++++++++..+.-..     .....+|||++++|
T Consensus       189 i~ki~ggs~~ds-~~i~G~~~~~~~~~~~-------m~~~~~n~~Ill~~~~le~~~~~~~-----~~~~~~lvi~~~~I  255 (484)
T cd03342         189 IMQMQHKSDSDT-KLIRGLVLDHGARHPD-------MPKRVENAYILTCNVSLEYEKTEVN-----SGFFYSVVINQKGI  255 (484)
T ss_pred             EEEecCCChhhc-eEEeeEEEecCCCCCC-------CCccccCceEEEEeCCCCCCccccC-----cEEEEEEEEeCCCc
Confidence            456788888875 9999999999999997       5788999999999999986543111     01124699999999


Q ss_pred             cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEE---EecceEE
Q 016809           90 ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVT---ISKDDTV  166 (382)
Q Consensus        90 ~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~---i~~~~~~  166 (382)
                      +|.++++|.+|+      |+||++     +++++|+|||++|||+++++     ++++++++||+|++|+   +++++|+
T Consensus       256 ~~~al~~l~~~~------I~av~~-----~~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~  319 (484)
T cd03342         256 DPPSLDMLAKEG------ILALRR-----AKRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYT  319 (484)
T ss_pred             cHHHHHHHHHCC------CeEEEe-----CCHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEE
Confidence            999999999998      789985     46889999999999999999     9999999999999995   5678899


Q ss_pred             EEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-
Q 016809          167 ILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-  245 (382)
Q Consensus       167 ~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-  245 (382)
                      +|++|+++                                   +++||+|||+|+.+++|.+|+++||++++++++++| 
T Consensus       320 ~i~~~~~~-----------------------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~  364 (484)
T cd03342         320 FIEGVKNP-----------------------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKC  364 (484)
T ss_pred             EEECCCCC-----------------------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99988753                                   589999999999999999999999999999999999 


Q ss_pred             ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCcc
Q 016809          246 IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEY  321 (382)
Q Consensus       246 vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i  321 (382)
                      +|||||++|++|+..|++++.. ++++|+++++|++||+.||++||+|||+|+.+++.+|++.|   +.++|+|+.+|++
T Consensus       365 ~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~  444 (484)
T cd03342         365 VVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEP  444 (484)
T ss_pred             EEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcc
Confidence            9999999999999999998766 78999999999999999999999999999999999998776   4679999999999


Q ss_pred             ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccC
Q 016809          322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL  360 (382)
Q Consensus       322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~  360 (382)
                      +||++.|||||+.+|.++|++|+|+|++|||||++|+.+
T Consensus       445 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~  483 (484)
T cd03342         445 MDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG  483 (484)
T ss_pred             cchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence            999999999999999999999999999999999999764

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=100.00  E-value=4.8e-58  Score=475.24  Aligned_cols=294  Identities=22%  Similarity=0.330  Sum_probs=267.2

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC-------------HHHHHHHH----
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTAVVRVL----   72 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~-------------~~~l~~~l----   72 (382)
                      |.+.+|++++|+ ++++|++|++++.++       +|++.++||+|++++++++.             ++++.+++    
T Consensus       197 i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~  268 (525)
T TIGR02344       197 VEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEE  268 (525)
T ss_pred             EEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHH
Confidence            455679999995 999999999998776       37889999999999999754             46665554    


Q ss_pred             -------HHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           73 -------ELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        73 -------e~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                             +++.+.+++|||+++.|++.++++|.+++      |++++     ++++++|+|||++|||+++++     ++
T Consensus       269 ~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~------I~av~-----~v~~~~LerIa~~tGa~ii~~-----l~  332 (525)
T TIGR02344       269 EYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN------ISAIR-----RVRKTDNNRIARACGATIVNR-----PE  332 (525)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------ceEEe-----cCCHHHHHHHHHHhCCeEecc-----hh
Confidence                   48889999999999999999999998877      78887     667999999999999999999     99


Q ss_pred             cCCcCCCce-eeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016809          146 KVNLDMLGT-CKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE  221 (382)
Q Consensus       146 ~l~~~~lG~-~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~  221 (382)
                      +++++++|+ |+.|++.   ++++++|++|+++                                   .+|||+|||+|+
T Consensus       333 ~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~-----------------------------------~~~TIlLrG~t~  377 (525)
T TIGR02344       333 ELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP-----------------------------------KACTILLRGASK  377 (525)
T ss_pred             hCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEEEcCCH
Confidence            999999999 9999974   4789999988753                                   489999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016809          222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV  299 (382)
Q Consensus       222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~  299 (382)
                      .+++|++|+++||+++++++++++ +|||||++|++||..|++++.. ++++|+++++|++||+.||++||+|||+|+.+
T Consensus       378 ~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~  457 (525)
T TIGR02344       378 DVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIR  457 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence            999999999999999999999997 9999999999999999998766 78999999999999999999999999999999


Q ss_pred             HHHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCc
Q 016809          300 VVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK  362 (382)
Q Consensus       300 vi~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~  362 (382)
                      ++++|++.|    +.++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++|||||++|...|+
T Consensus       458 ~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~  524 (525)
T TIGR02344       458 TLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKK  524 (525)
T ss_pred             HHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC
Confidence            999999876    356999999999999999999999999999999999999999999999988663

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=100.00  E-value=9.2e-58  Score=473.04  Aligned_cols=291  Identities=19%  Similarity=0.306  Sum_probs=264.6

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHH--------
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAV--------   68 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l--------   68 (382)
                      |.+.+|++++|+ ++++|++|+++|.+|+       |++.++||+|++++++             +++++++        
T Consensus       206 i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~-------m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~  277 (532)
T TIGR02343       206 VEGKVGGSLEDT-KLIKGIIIDKDFSHPQ-------MPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQ  277 (532)
T ss_pred             EEEecCCCcccc-eeEeeEEEecCcCCCC-------CCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHH
Confidence            456789999987 9999999999999987       5777889999998876             4566665        


Q ss_pred             ---HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           69 ---VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        69 ---~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                         .++++++++.|+||||++++|+|.++++|.+|+      +.+|+++     ++++|+|||++|||+++++     ++
T Consensus       278 ~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~~~-----~~~~l~~Ia~~tGa~~i~~-----l~  341 (532)
T TIGR02343       278 QKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVRWV-----GGHELELIAIATGGRIVPR-----FE  341 (532)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEEcC-----CHHHHHHHHHHhCCEEecc-----cc
Confidence               677999999999999999999999999999998      5788855     4778999999999999999     99


Q ss_pred             cCCcCCCceeeEEEEe-----cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016809          146 KVNLDMLGTCKKVTIS-----KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS  220 (382)
Q Consensus       146 ~l~~~~lG~~~~v~i~-----~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t  220 (382)
                      ++++++||+|++|+..     .++++++++|+++                                   .++||+|||+|
T Consensus       342 ~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~t  386 (532)
T TIGR02343       342 ELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS-----------------------------------KAVTIFIRGGN  386 (532)
T ss_pred             cCCHhHCcccceEEEEEecCCcceEEEEECCCCC-----------------------------------CEEEEEEECCC
Confidence            9999999999999954     2478899988753                                   48999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      +.+++|.+|+++||+++++++++++ +|||||++|++|++.|++++.. ++++|+++++|++||++||++||+|||+|+.
T Consensus       387 ~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~  466 (532)
T TIGR02343       387 KMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPI  466 (532)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999999999999999997 9999999999999999998766 7889999999999999999999999999999


Q ss_pred             HHHHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016809          299 VVVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE  359 (382)
Q Consensus       299 ~vi~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~  359 (382)
                      +++++|++.|    +.++|+|+.+|+++||++.|||||+.||.++|+.|+|+|++|||||++|..
T Consensus       467 ~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~  531 (532)
T TIGR02343       467 GTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP  531 (532)
T ss_pred             HHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence            9999998765    356999999999999999999999999999999999999999999999954

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=100.00  E-value=1.4e-57  Score=472.50  Aligned_cols=299  Identities=19%  Similarity=0.289  Sum_probs=266.5

Q ss_pred             EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCH-------------HH----------
Q 016809           11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL-------------TA----------   67 (382)
Q Consensus        11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~-------------~~----------   67 (382)
                      .+.+|+++.| +++++|++|+++|.++.       |+++++||+|++++++++..             ++          
T Consensus       194 ~k~~G~s~~~-s~~i~Gi~i~~~~~~~~-------m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~  265 (536)
T TIGR02340       194 LKAHGGSARE-SYLVKGYALNCTRASQQ-------MPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREAD  265 (536)
T ss_pred             EEecCCCccc-cEEEEEEEEecccCCCC-------CcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHH
Confidence            3489999965 59999999999999874       78899999999999997532             22          


Q ss_pred             -HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCC-ccc
Q 016809           68 -VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM-DLE  145 (382)
Q Consensus        68 -l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~-~l~  145 (382)
                       +.+.++.|++.|++|||++++|++.++++|.+++      +++++     ++++++|+|||++|||+++++..++ ..+
T Consensus       266 ~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~-----rv~~~~LerIa~~tGa~ii~~~~~l~~~~  334 (536)
T TIGR02340       266 ITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGVR-----RCKKEDLKRIAKATGGTLVSTLADLEGEE  334 (536)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEe-----cCCHHHHHHHHHHhCCEEecchhhcCccc
Confidence             3366788889999999999999999999999988      68888     4468999999999999999995333 334


Q ss_pred             cCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016809          146 KVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA  222 (382)
Q Consensus       146 ~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~  222 (382)
                      ++++++||+|++|+   +++++|++|++++++                                   .+|||+|||+|+.
T Consensus       335 ~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~TIlirG~t~~  379 (536)
T TIGR02340       335 TFDASYLGFADEVVEERIADDECILIKGTKGR-----------------------------------KSASIILRGANDF  379 (536)
T ss_pred             cccccccccCceEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEEeCCcHH
Confidence            56677899999999   667899999987653                                   4899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016809          223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV  300 (382)
Q Consensus       223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v  300 (382)
                      +++|++|+++||++++++++++| +|||||++|++++..|++++.. ++++++++++|++||++||++||+|||+|+.++
T Consensus       380 ~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~  459 (536)
T TIGR02340       380 MLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTEL  459 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence            99999999999999999999999 9999999999999999988665 789999999999999999999999999999999


Q ss_pred             HHHHHhcC-----------CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016809          301 VGKLLEQD-----------NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE  363 (382)
Q Consensus       301 i~~l~~~~-----------~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~  363 (382)
                      +.+|++.|           +.++|||+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|..+|++
T Consensus       460 l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~  533 (536)
T TIGR02340       460 VAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQ  533 (536)
T ss_pred             HHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence            99998865           2369999999999999999999999999999999999999999999999987643

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=100.00  E-value=2.1e-57  Score=470.16  Aligned_cols=303  Identities=18%  Similarity=0.290  Sum_probs=271.5

Q ss_pred             ccCCCc---e--EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC-------------CC
Q 016809            3 KVGKEG---V--ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SN   64 (382)
Q Consensus         3 ~~G~~g---~--i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I-------------~~   64 (382)
                      ++|+++   .  |...+|+++.|+ ++++|++|+++|.+|+|.    ++++.++||+|+++++++             ++
T Consensus       181 ~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~  255 (522)
T cd03340         181 SLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE----QQPKKFKNPKILLLNVELELKAEKDNAEVRVED  255 (522)
T ss_pred             HhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCccccc----cCCccccCCeEEEEeCCCCCCccccceEEEECC
Confidence            456665   2  344589999986 899999999999998753    457779999999999984             45


Q ss_pred             HHH-----------HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCC
Q 016809           65 LTA-----------VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGG  133 (382)
Q Consensus        65 ~~~-----------l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~  133 (382)
                      +++           +.++++.+++.|++||+++++|+|.++++|.+++      |++++     ++++++|+|||++|||
T Consensus       256 ~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~-----~v~~~~l~rIa~~tGa  324 (522)
T cd03340         256 PEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAG-----RVPEEDLKRVAQATGG  324 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHHCC
Confidence            444           4566788999999999999999999999999998      57777     4468899999999999


Q ss_pred             eEeccCCCCccccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCC
Q 016809          134 DLITEELGMDLEKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGG  210 (382)
Q Consensus       134 ~ii~~~~~~~l~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~  210 (382)
                      +++++     ++++++++||+|+.|+   ++++++++|.+|..+                                   .
T Consensus       325 ~ii~~-----l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~  364 (522)
T cd03340         325 SIQTT-----VSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-----------------------------------K  364 (522)
T ss_pred             EEeec-----cccCCccccccceEEEEEEECCEEEEEEECCCCC-----------------------------------c
Confidence            99999     9999999999999999   456789999988643                                   4


Q ss_pred             eEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHH
Q 016809          211 VAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHT  288 (382)
Q Consensus       211 ~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~  288 (382)
                      .+||+|||+|+.+++|.+|+++||++++++++++| ||||||++|++++..|++++.. ++++++++++|++||++||++
T Consensus       365 ~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~  444 (522)
T cd03340         365 TCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQ  444 (522)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999998 9999999999999999998766 789999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHhcC---C-CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016809          289 IAANAGVEGAVVVGKLLEQD---N-TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP  361 (382)
Q Consensus       289 L~~NaG~d~~~vi~~l~~~~---~-~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~  361 (382)
                      ||+|||+|+.+++.+|++.|   + .++|+|+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|+.++
T Consensus       445 La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~  521 (522)
T cd03340         445 LCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPK  521 (522)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence            99999999999999999876   2 5699999999999999999999999999999999999999999999998753

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=100.00  E-value=2.1e-57  Score=469.68  Aligned_cols=301  Identities=19%  Similarity=0.293  Sum_probs=271.1

Q ss_pred             cccCCCce----------EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC--------
Q 016809            2 EKVGKEGV----------ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS--------   63 (382)
Q Consensus         2 ~~~G~~g~----------i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~--------   63 (382)
                      .++|++|.          |.+.+|++++|+ ++++|++|+++|.++++      +|+.++||+|++++++++        
T Consensus       168 ~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~~~~~~  240 (515)
T cd03338         168 LKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPKTDMDN  240 (515)
T ss_pred             HHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccccccCc
Confidence            46788885          788899999987 99999999999999752      377789999999888743        


Q ss_pred             -----CH-----------HHHHHHHHHHHHcCCCEEEEecCC-----cHHHHHHHHHccccCCceEEEEecCCCCcchhh
Q 016809           64 -----NL-----------TAVVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKA  122 (382)
Q Consensus        64 -----~~-----------~~l~~~le~i~~~~~~lvI~~~~i-----~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~  122 (382)
                           ++           +++.++++++++.|+||||++++|     ++.++++|..++      |+||+     +++++
T Consensus       241 ~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~------I~av~-----~~~~~  309 (515)
T cd03338         241 NIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLK------IMVVK-----DIERE  309 (515)
T ss_pred             eEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCC------ceEEe-----cCCHH
Confidence                 33           335677899999999999999998     899999998766      78998     56789


Q ss_pred             hHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHH
Q 016809          123 NMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK---DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEK  199 (382)
Q Consensus       123 ~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~---~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~  199 (382)
                      +|+|||++|||+++++     ++++++++||+|+.|++.+   +++++|.+|.+                          
T Consensus       310 ~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~--------------------------  358 (515)
T cd03338         310 EIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN--------------------------  358 (515)
T ss_pred             HHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEECCeEEEEEEecCC--------------------------
Confidence            9999999999999999     9999999999999999764   57888887753                          


Q ss_pred             HHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHH
Q 016809          200 LQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQI  277 (382)
Q Consensus       200 l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~  277 (382)
                              ++++|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++|++.|++++.. ++++|+++++
T Consensus       359 --------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~  430 (515)
T cd03338         359 --------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRA  430 (515)
T ss_pred             --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence                    24689999999999999999999999999999999999 9999999999999999998766 7899999999


Q ss_pred             HHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchh
Q 016809          278 IQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTE  354 (382)
Q Consensus       278 ~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id  354 (382)
                      |++||+.||++||+|||+|+.+++.+|++.|   +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||
T Consensus       431 ~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID  510 (515)
T cd03338         431 FADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKID  510 (515)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999998876   5679999999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q 016809          355 AIVVE  359 (382)
Q Consensus       355 ~iI~~  359 (382)
                      ++|++
T Consensus       511 ~ii~~  515 (515)
T cd03338         511 DIVLA  515 (515)
T ss_pred             hhhcC
Confidence            99863

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=100.00  E-value=4.4e-57  Score=466.96  Aligned_cols=294  Identities=26%  Similarity=0.366  Sum_probs=267.5

Q ss_pred             eEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC--------------CHHHHH-----
Q 016809            9 VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS--------------NLTAVV-----   69 (382)
Q Consensus         9 ~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~--------------~~~~l~-----   69 (382)
                      .|.+.+|++++|+ ++++|+++++.+.++        |+++++||+|++++++++              +++++.     
T Consensus       190 ~i~ki~G~s~~ds-~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~  260 (517)
T cd03336         190 QIIKKLGGSLKDS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEA  260 (517)
T ss_pred             eEEEccCCCccce-EEEeeEEEecccCCC--------CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHH
Confidence            3556689999986 899999999987543        588899999999999865              555542     


Q ss_pred             ------HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc
Q 016809           70 ------RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD  143 (382)
Q Consensus        70 ------~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~  143 (382)
                            ++++.|++.|++++++++.|++.++++|.+++      |++|++|+     +++|+|||++|||+++++     
T Consensus       261 E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~------I~av~~v~-----~~~L~rIa~~tGa~ii~~-----  324 (517)
T cd03336         261 EKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAG------IMAIEHAD-----FDGVERLALVTGGEIAST-----  324 (517)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------cEEEecCC-----HHHHHHHHHHhCCEEecc-----
Confidence                  35788999999999999999999999999888      79999775     668999999999999999     


Q ss_pred             cccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016809          144 LEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS  220 (382)
Q Consensus       144 l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t  220 (382)
                      ++++++++||+|+.|+..   ++++++|.+|++                                   +++|||+|||+|
T Consensus       325 l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t  369 (517)
T cd03336         325 FDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA-----------------------------------GEACTIVLRGAS  369 (517)
T ss_pred             cCCCCcccccccceEEEEEECCeEEEEEEccCC-----------------------------------CceEEEEEeCCC
Confidence            999999999999999954   578999998864                                   358999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      +.+++|.+|+++||++++++++++| +|||||++|++|++.|++++.+ ++++++++++|++||+.||++||+|||+|+.
T Consensus       370 ~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~  449 (517)
T cd03336         370 QQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSA  449 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999 9999999999999999998776 7899999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCc
Q 016809          299 VVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK  362 (382)
Q Consensus       299 ~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~  362 (382)
                      +++.+|++.|   +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+.+|+
T Consensus       450 ~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~  516 (517)
T cd03336         450 ELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPR  516 (517)
T ss_pred             HHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCCC
Confidence            9999999876   467999999999999999999999999999999999999999999999998774

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=100.00  E-value=3e-57  Score=469.50  Aligned_cols=293  Identities=23%  Similarity=0.345  Sum_probs=267.1

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC--------------CCHHHHH------
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI--------------SNLTAVV------   69 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I--------------~~~~~l~------   69 (382)
                      |.+.+|++++|+ ++++|+++++++.++        |+++++||+|+++++++              ++++++.      
T Consensus       203 i~ki~Ggsi~ds-~lv~G~v~~~~~~~~--------~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E  273 (533)
T PTZ00212        203 IIKKPGGTLRDS-YLEDGFILEKKIGVG--------QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAE  273 (533)
T ss_pred             EEEecCcCcccc-EEEEeEEEecccCCC--------CCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHH
Confidence            567799999987 899999999987553        68889999999999986              5665543      


Q ss_pred             -----HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCcc
Q 016809           70 -----RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL  144 (382)
Q Consensus        70 -----~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l  144 (382)
                           ++++.|++.|++++++++.|++.++++|.+++      |++||++     ++++++|||++|||+++++     +
T Consensus       274 ~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~------I~avr~v-----~~~~l~rIa~~tGa~iis~-----l  337 (533)
T PTZ00212        274 KEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG------IMAIEHA-----DFDGMERLAAALGAEIVST-----F  337 (533)
T ss_pred             HHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------CEEEecC-----CHHHHHHHHHHhCCEEeec-----C
Confidence                 34778999999999999999999999999998      7899844     5789999999999999999     9


Q ss_pred             ccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016809          145 EKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE  221 (382)
Q Consensus       145 ~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~  221 (382)
                      +++++++||+|+.|+   ++++++++|++|..                                   +++|||+|||+|+
T Consensus       338 ~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t~  382 (533)
T PTZ00212        338 DTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK-----------------------------------GEACTIVLRGAST  382 (533)
T ss_pred             CCCCHHHccCCceEEEEEECCeEEEEEEccCC-----------------------------------CCEEEEEEECCCh
Confidence            999999999999999   55789999998763                                   4689999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016809          222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV  299 (382)
Q Consensus       222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~  299 (382)
                      .+++|.+|+++|||+++++++++| +|||||++|++||..|++++.. ++++++++++|++||++||++||+|||+|+.+
T Consensus       383 ~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~  462 (533)
T PTZ00212        383 HILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAE  462 (533)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            999999999999999999999998 9999999999999999998776 78999999999999999999999999999999


Q ss_pred             HHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCc
Q 016809          300 VVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK  362 (382)
Q Consensus       300 vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~  362 (382)
                      ++.+|++.|   +.++|+|+.+|++.||++.|||||+.||.++|+.|+|+|++|||||++|..+|+
T Consensus       463 vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~  528 (533)
T PTZ00212        463 LVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPR  528 (533)
T ss_pred             HHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCCc
Confidence            999998766   467999999999999999999999999999999999999999999999998653

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=100.00  E-value=2.4e-57  Score=469.86  Aligned_cols=297  Identities=19%  Similarity=0.279  Sum_probs=266.0

Q ss_pred             EeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC-------------CCHHH-----------H
Q 016809           13 HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA-----------V   68 (382)
Q Consensus        13 ~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I-------------~~~~~-----------l   68 (382)
                      .+|++++|+ ++++|++|++++.+         +++.++||+|+++++++             +++++           +
T Consensus       199 i~G~s~~ds-~li~Gi~~~~~~~~---------~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i  268 (531)
T TIGR02346       199 IMGGSISNS-EVLKGMVFNREAEG---------SVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQI  268 (531)
T ss_pred             ecCCChhhc-eeEeeeEEeccCCC---------CceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHH
Confidence            489998875 99999999998432         46789999999999974             23333           4


Q ss_pred             HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCC
Q 016809           69 VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVN  148 (382)
Q Consensus        69 ~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~  148 (382)
                      .++++++++.|+||||++++|+|.++++|..++      |+||++|+     ..+|+|||++|||+++++     +++++
T Consensus       269 ~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~------I~av~~~~-----~~~l~~Ia~~tGa~ii~~-----l~~~~  332 (531)
T TIGR02346       269 EAYIKAIADSGVNVIVTGGSVGDMALHYCEKYN------IMVLKIPS-----KFELRRLCKTVGATPLAR-----LGAPQ  332 (531)
T ss_pred             HHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCC------cEEEecCC-----HHHHHHHHHHHCCEEecc-----cccCC
Confidence            577899999999999999999999999998777      79999886     558999999999999999     89999


Q ss_pred             cCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHH
Q 016809          149 LDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVG  225 (382)
Q Consensus       149 ~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~  225 (382)
                      +++||+|++|++.   ++++.+|.++..                                  .++++||+|||+|+.+++
T Consensus       333 ~~~LG~a~~v~~~~ig~~~~~~i~~~~~----------------------------------~~~~~tI~lrG~t~~~l~  378 (531)
T TIGR02346       333 PEEIGYVDSVYVSEIGGQKVTVFKQENG----------------------------------DSKISTIILRGSTKNLLD  378 (531)
T ss_pred             HhHccccceEEEEEECCEEEEEEEccCC----------------------------------CCCeEEEEEECCCHHHHH
Confidence            9999999999976   367888877542                                  257999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHH
Q 016809          226 EKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGK  303 (382)
Q Consensus       226 E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~  303 (382)
                      |++|+++||++++++++++| +|||||++|++||..|++++.. ++++++++++|++||+.||++||+|||+|+.+++.+
T Consensus       379 E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~  458 (531)
T TIGR02346       379 DIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPK  458 (531)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999999 9999999999999999998766 789999999999999999999999999999999999


Q ss_pred             HHhcC---CCceeEeCCCCc--cccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCC
Q 016809          304 LLEQD---NTDLGYDAAKGE--YVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG  369 (382)
Q Consensus       304 l~~~~---~~~~Gid~~~~~--i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~  369 (382)
                      |++.|   +.++|+|+.+|+  ++||++.|||||+.||+++|+.|+|+|++|||||++|..+|...+++|+
T Consensus       459 l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~~  529 (531)
T TIGR02346       459 LYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQ  529 (531)
T ss_pred             HHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCCC
Confidence            98875   457999999999  5999999999999999999999999999999999999998877777543

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=100.00  E-value=1.1e-56  Score=464.03  Aligned_cols=292  Identities=21%  Similarity=0.327  Sum_probs=261.7

Q ss_pred             EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CH-----------H
Q 016809           11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NL-----------T   66 (382)
Q Consensus        11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~-----------~   66 (382)
                      .+.+|+++.|+ ++++|++|+++|.++.      +||+.++||+|++++++++             ++           +
T Consensus       188 ~k~~Ggs~~ds-~li~Givl~k~~~~~~------~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~  260 (517)
T TIGR02342       188 VKKLGGTIDDT-ELIEGLVFTQKASRSA------GGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERK  260 (517)
T ss_pred             EeccCCChhhc-EEEeeEEEeccccccC------CCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHH
Confidence            34578888875 9999999999998741      3788899999999998754             32           2


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCC-----cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCC
Q 016809           67 AVVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELG  141 (382)
Q Consensus        67 ~l~~~le~i~~~~~~lvI~~~~i-----~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~  141 (382)
                      ++.++++++++.|+||||++++|     ++.++++|..++      |+||+     ++++++|+|||++|||+++++   
T Consensus       261 ~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~------I~av~-----~v~~~~LerIa~~tGa~ii~~---  326 (517)
T TIGR02342       261 YILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMK------IMVVK-----DIEREEVEFICKTIGCKPIAS---  326 (517)
T ss_pred             HHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCC------ceEEe-----cCCHHHHHHHHHHHCCEEEcc---
Confidence            35678899999999999999998     899999998876      79998     557899999999999999999   


Q ss_pred             CccccCCcCCCceeeEEE-Ee--cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecC
Q 016809          142 MDLEKVNLDMLGTCKKVT-IS--KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGG  218 (382)
Q Consensus       142 ~~l~~l~~~~lG~~~~v~-i~--~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG  218 (382)
                        ++++++++||+|+.|+ ++  +..++++.++.+                                  +++++||+|||
T Consensus       327 --~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~----------------------------------~~~~~tIllrG  370 (517)
T TIGR02342       327 --IDHFTADKLGSAELVEEVTTDGGKIIKITGIQN----------------------------------AGKTVTVLLRG  370 (517)
T ss_pred             --hhhcCcccCcCCceEEEEEECCeEEEEEEccCC----------------------------------CCceEEEEEeC
Confidence              8999999999999999 33  456777777654                                  24689999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCC
Q 016809          219 ASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVE  296 (382)
Q Consensus       219 ~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d  296 (382)
                      +|+.+++|++|+++||+++++++++++ +|||||++|+++|..|++++.+ ++++|+++++|++||++||++||+|||+|
T Consensus       371 ~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d  450 (517)
T TIGR02342       371 SNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLN  450 (517)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999986 9999999999999999998766 78999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016809          297 GAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE  359 (382)
Q Consensus       297 ~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~  359 (382)
                      +.+++++|++.|   +.++|+|+.+|+++||++.|||||+.||.++|++|+|+|++|||||++|+.
T Consensus       451 ~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~  516 (517)
T TIGR02342       451 PIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT  516 (517)
T ss_pred             HHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence            999999999876   567999999999999999999999999999999999999999999999975

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=100.00  E-value=7e-56  Score=457.78  Aligned_cols=293  Identities=24%  Similarity=0.352  Sum_probs=264.2

Q ss_pred             EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC--------------HHHH--------
Q 016809           11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN--------------LTAV--------   68 (382)
Q Consensus        11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~--------------~~~l--------   68 (382)
                      .+.+|++++|+ ++++|+++++.+.++        +++.++||+|++++++++.              ++++        
T Consensus       193 ~k~~G~s~~~s-~l~~G~v~~~~~~~~--------~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~  263 (519)
T TIGR02341       193 IKKLGGSLNDS-YLDEGFLLEKKIGVN--------QPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEK  263 (519)
T ss_pred             EEccCCCcccc-eEEeeEEEeccCCCC--------CceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHH
Confidence            34479999886 899999999887543        6788999999999998752              3333        


Q ss_pred             ---HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           69 ---VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        69 ---~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                         ..+++.|++.|++++++++.|++.++++|..++      |++|++++     +++|+|||++|||+++++     ++
T Consensus       264 ~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~------I~~v~~~~-----~~~l~~ia~~tGa~ii~~-----~~  327 (519)
T TIGR02341       264 EKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG------VMAIEHAD-----FEGIERLALVTGGEIVST-----FD  327 (519)
T ss_pred             HHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC------cEEEecCC-----HHHHHHHHHHhCCEEecc-----cc
Confidence               234678999999999999999999999999888      79999775     668999999999999999     89


Q ss_pred             cCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016809          146 KVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA  222 (382)
Q Consensus       146 ~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~  222 (382)
                      ++++++||+|+.|+..   ++++++|.+|++                                   +++|||+|||+|+.
T Consensus       328 ~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TIllrG~t~~  372 (519)
T TIGR02341       328 HPELVKLGSCDLIEEIMIGEDKLLKFSGVKL-----------------------------------GEACTIVLRGATQQ  372 (519)
T ss_pred             cCCccccccCceEEEEEECCEEEEEEEcCCC-----------------------------------CCEEEEEEeCCCHH
Confidence            9999999999999854   578999998874                                   35899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016809          223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV  300 (382)
Q Consensus       223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v  300 (382)
                      +++|.+|+++||+++++++++++ +|||||++|++|++.|++++.. ++++++++++|++||+.||++||+|||+|+.++
T Consensus       373 ~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~  452 (519)
T TIGR02341       373 ILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAEL  452 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence            99999999999999999999997 9999999999999999998766 789999999999999999999999999999999


Q ss_pred             HHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016809          301 VGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE  363 (382)
Q Consensus       301 i~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~  363 (382)
                      +.+|++.|   +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+.+|++
T Consensus       453 l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~  518 (519)
T TIGR02341       453 VAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPRA  518 (519)
T ss_pred             HHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCC
Confidence            99999876   4569999999999999999999999999999999999999999999999998843

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=100.00  E-value=5.5e-56  Score=459.28  Aligned_cols=295  Identities=18%  Similarity=0.285  Sum_probs=265.4

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CHHH---------
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTA---------   67 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~~~---------   67 (382)
                      |...+|++++|+ ++++|++|+++|.+|+|.    +|++.++||+|++++++++             ++++         
T Consensus       194 i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~  268 (522)
T TIGR02345       194 VKKVQGGSLQDS-VLVNGVAFKKTFSYAGFE----QQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEW  268 (522)
T ss_pred             EEeecCCCHHhc-ceecceEEecccCccccc----cCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHH
Confidence            344589999997 789999999999999864    4678899999999999864             3444         


Q ss_pred             --HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           68 --VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        68 --l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                        +..+++++++.|+++|+++++|++.++++|.+++      |.+++     ++.+++++++|++|||+++++     ++
T Consensus       269 ~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~------I~~~~-----~v~~~dl~ria~~tga~ii~~-----~~  332 (522)
T TIGR02345       269 AIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHN------IFCAG-----RVSDEDLKRVVKACGGSIQST-----TS  332 (522)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCC------cEEEe-----cCCHHHHHHHHHHhCCeEEcc-----hh
Confidence              2355677888999999999999999999999988      67887     445889999999999999999     99


Q ss_pred             cCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016809          146 KVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA  222 (382)
Q Consensus       146 ~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~  222 (382)
                      ++++++||+|+.++..   ++++++|.+|+++                                   .+|||+|||+|+.
T Consensus       333 ~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-----------------------------------~~~TI~lrG~t~~  377 (522)
T TIGR02345       333 DLEADVLGTCALFEERQIGSERYNYFTGCPHA-----------------------------------KTCTIILRGGAEQ  377 (522)
T ss_pred             hCChhhccCCceEEEEEECCeEEEEEEcCCCC-----------------------------------ceEEEEEECCCHH
Confidence            9999999999999964   4688899887643                                   4899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016809          223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV  300 (382)
Q Consensus       223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v  300 (382)
                      +++|.+|+++||+++++++++++ +|||||++|+++++.|++++.. ++++++++++|++||++||++||+|||+|+.++
T Consensus       378 ~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~v  457 (522)
T TIGR02345       378 FIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEI  457 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence            99999999999999999999986 9999999999999999988766 789999999999999999999999999999999


Q ss_pred             HHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccC
Q 016809          301 VGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL  360 (382)
Q Consensus       301 i~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~  360 (382)
                      +.+|++.|   +.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+.+
T Consensus       458 l~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~  520 (522)
T TIGR02345       458 LNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP  520 (522)
T ss_pred             HHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence            99998876   3579999999999999999999999999999999999999999999999774

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=100.00  E-value=1.4e-55  Score=451.14  Aligned_cols=276  Identities=20%  Similarity=0.297  Sum_probs=253.0

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDV   89 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i   89 (382)
                      |.+.+|++++|+ ++++|++|++.+..         ++++++||+|++++++++.              |++|||++++|
T Consensus       186 i~ki~Gg~~~ds-~lv~Giv~~~~~~~---------~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I  241 (472)
T cd03341         186 VVKILGGSLEDS-KVVRGMVFKREPEG---------SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSV  241 (472)
T ss_pred             EEEecCCCcccc-eEEeeEEEccccCC---------CceeccCCcEEEEeccccC--------------CCeEEEECCCC
Confidence            345589999987 99999999875432         4578999999999999987              89999999999


Q ss_pred             cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEec---ceEE
Q 016809           90 ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK---DDTV  166 (382)
Q Consensus        90 ~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~---~~~~  166 (382)
                      +|.++++|.+++      |++|++|+     +++|+|||++||++++++     +++++++++|+|++|++.+   ++++
T Consensus       242 ~d~al~~l~~~~------I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~  305 (472)
T cd03341         242 GDLALHYCNKYG------IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVV  305 (472)
T ss_pred             CHHHHHHHHHCC------eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEE
Confidence            999999998776      89999875     788999999999999999     8889999999999999876   7899


Q ss_pred             EEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-
Q 016809          167 ILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-  245 (382)
Q Consensus       167 ~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-  245 (382)
                      +|.+|.+                                  .++++||+|||+|+.+++|++|+++||++++++++++| 
T Consensus       306 ~~~~~~~----------------------------------~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~  351 (472)
T cd03341         306 VFRQNKE----------------------------------DSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGR  351 (472)
T ss_pred             EEEccCC----------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9988753                                  14689999999999999999999999999999999999 


Q ss_pred             ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCC--
Q 016809          246 IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKG--  319 (382)
Q Consensus       246 vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~--  319 (382)
                      +|||||++|++++..|++++.. ++++++++++|++||++||++|++|||+|+.+++.+|+..|   +.++|||+.+|  
T Consensus       352 vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~  431 (472)
T cd03341         352 FVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDE  431 (472)
T ss_pred             EEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCC
Confidence            9999999999999999998765 78999999999999999999999999999999999998766   56799999999  


Q ss_pred             ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016809          320 EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE  359 (382)
Q Consensus       320 ~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~  359 (382)
                      ++.||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus       432 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  471 (472)
T cd03341         432 GTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA  471 (472)
T ss_pred             CccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence            9999999999999999999999999999999999999865

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=100.00  E-value=1.2e-55  Score=452.60  Aligned_cols=273  Identities=21%  Similarity=0.346  Sum_probs=250.6

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDV   89 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i   89 (382)
                      |.+.+|+++.|+ ++++|++|++++.++       +|+++++||+|++++++++.                 |||++++|
T Consensus       197 i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le~-----------------lvi~~k~I  251 (480)
T cd03337         197 VEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLEY-----------------LVITEKGV  251 (480)
T ss_pred             EEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcce-----------------EEEeCCCc
Confidence            455679999985 999999999999886       48899999999999999876                 99999999


Q ss_pred             cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCce-eeEEEEe---cceE
Q 016809           90 ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGT-CKKVTIS---KDDT  165 (382)
Q Consensus        90 ~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~-~~~v~i~---~~~~  165 (382)
                      +|.++++|.+|+      |++|+     ++++++|+|||++|||+++++     ++++++++||+ |+.++..   ++++
T Consensus       252 ~d~al~~L~~~~------I~~v~-----~v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~  315 (480)
T cd03337         252 SDLAQHYLVKAG------ITALR-----RVRKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYF  315 (480)
T ss_pred             cHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEE
Confidence            999999999998      78998     456899999999999999999     89999999999 5555543   4688


Q ss_pred             EEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 016809          166 VILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG  245 (382)
Q Consensus       166 ~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g  245 (382)
                      ++|++|+++                                   +.+||+|||+|+.+++|.+|+++||+++++++++++
T Consensus       316 ~~i~~~~~~-----------------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~  360 (480)
T cd03337         316 TFITECKDP-----------------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNP  360 (480)
T ss_pred             EEEEcCCCC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999988753                                   589999999999999999999999999999999997


Q ss_pred             -ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC----CCceeEeCCCC
Q 016809          246 -IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD----NTDLGYDAAKG  319 (382)
Q Consensus       246 -vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~----~~~~Gid~~~~  319 (382)
                       +|||||++|++||+.|++++.+ ++++|+++++|++||++||++||+|||+|+.+++.+|++.|    +.++|+|+.+|
T Consensus       361 ~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g  440 (480)
T cd03337         361 KLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETG  440 (480)
T ss_pred             CEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCC
Confidence             9999999999999999998766 78999999999999999999999999999999999999876    35699999999


Q ss_pred             ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016809          320 EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV  358 (382)
Q Consensus       320 ~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~  358 (382)
                      +++||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus       441 ~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~  479 (480)
T cd03337         441 DIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS  479 (480)
T ss_pred             CcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence            999999999999999999999999999999999999985

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-55  Score=448.41  Aligned_cols=311  Identities=41%  Similarity=0.618  Sum_probs=272.2

Q ss_pred             cccCC-----CceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCc-eeecCceEEEeccCCCC-----------
Q 016809            2 EKVGK-----EGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQK-CELEDPLILVHEKKISN-----------   64 (382)
Q Consensus         2 ~~~G~-----~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~l~~p~Ill~d~~I~~-----------   64 (382)
                      .+||.     ||++.++..++..+++++++||+|+++|.+|||      |+ +.++||+||++|++|+.           
T Consensus       168 ~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~------~~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i  241 (524)
T COG0459         168 EKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF------MPDKRLENPKILLLDKKLEIKKPELPLEIVI  241 (524)
T ss_pred             HHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCC------CCccccccceEEEEccccccccccCcceeEe
Confidence            46777     999999877777777899999999999999997      55 78999999999999653           


Q ss_pred             --HHH------------HHHHHHHHHHcCCC-EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhH-HHHH
Q 016809           65 --LTA------------VVRVLELALKRQRP-LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANM-QDLA  128 (382)
Q Consensus        65 --~~~------------l~~~le~i~~~~~~-lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~l-e~la  128 (382)
                        .++            +..+++.+.+.+.| +++++++|+|.++++|.+++      |++++++     .++++ ++|+
T Consensus       242 ~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~------Ilt~~~v-----~~~dl~~~l~  310 (524)
T COG0459         242 SSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIA------ILTGRRV-----KKEDLGERLA  310 (524)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhc------ceeccee-----cchhhHHHHH
Confidence              222            23556778888999 78999999999999998888      6777644     57788 7999


Q ss_pred             HHHCCeEeccCCCCccccCCcCCCce--eeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhh
Q 016809          129 VLTGGDLITEELGMDLEKVNLDMLGT--CKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAK  206 (382)
Q Consensus       129 ~~tG~~ii~~~~~~~l~~l~~~~lG~--~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~  206 (382)
                      .+|||++++.     ++++++..+|.  |.+++..+                             .++++++.+.+|.++
T Consensus       311 ~~~ga~~v~~-----~~d~t~~~~G~~~~~~ve~~~-----------------------------~~~~~~~~~~~~~~~  356 (524)
T COG0459         311 KLGGAKIVSV-----LKDLTTIVLGEGAAGLVEETK-----------------------------TGDYDMEKLQERKAK  356 (524)
T ss_pred             HccCceEEee-----cccCceeecCccccceEEEee-----------------------------ccchhhhhhhhhhhc
Confidence            9999999999     89999999999  88887652                             122344445555556


Q ss_pred             hcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-Ch-hhHHHHHHHHHHhh
Q 016809          207 LSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NF-DQKIGVQIIQNALK  283 (382)
Q Consensus       207 l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~-~~~~~~~~~a~AL~  283 (382)
                       .+++|||+|||+|+.+++|++|+++|||+++++++++| +|||||++|++++..|+.++.+ ++ ++|+++++|++||+
T Consensus       357 -~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale  435 (524)
T COG0459         357 -AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALE  435 (524)
T ss_pred             -CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHH
Confidence             67899999999999999999999999999999999999 9999999999999999998433 54 89999999999999


Q ss_pred             hhHHHHHHHcCCCHHHHHHHHHhcCC-CceeEeCCCCcc-ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016809          284 TPVHTIAANAGVEGAVVVGKLLEQDN-TDLGYDAAKGEY-VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP  361 (382)
Q Consensus       284 ~ip~~L~~NaG~d~~~vi~~l~~~~~-~~~Gid~~~~~i-~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~  361 (382)
                      .||++||+|||+|+.+++.+|++.|+ +++|+|+.++++ .||++.|||||+.||.++|++|+|+|++|||+|++|.+.|
T Consensus       436 ~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~  515 (524)
T COG0459         436 APPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKP  515 (524)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999999999999986 569999999999 7799999999999999999999999999999999999998


Q ss_pred             ccC
Q 016809          362 KEE  364 (382)
Q Consensus       362 ~~~  364 (382)
                      ++.
T Consensus       516 ~~~  518 (524)
T COG0459         516 EEK  518 (524)
T ss_pred             ccc
Confidence            875

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=100.00  E-value=1.6e-53  Score=435.77  Aligned_cols=276  Identities=37%  Similarity=0.582  Sum_probs=253.0

Q ss_pred             CceEEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q 016809            7 EGVITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI   84 (382)
Q Consensus         7 ~g~i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI   84 (382)
                      .+.|.++  +||++.|+ ++++|++|+++|.+|+       |++.++||+|++++++++.                 |||
T Consensus       179 ~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~-------m~~~~~n~~Ili~~~~Le~-----------------lIi  233 (464)
T cd00309         179 LGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKLEY-----------------VVI  233 (464)
T ss_pred             cceEEEEecCCCCcccc-eeeeeEEEecCCCCCC-------CceeecCceEEEEecCcce-----------------EEe
Confidence            5666554  78888886 8999999999999987       5888999999999999987                 778


Q ss_pred             EecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEec--
Q 016809           85 VAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK--  162 (382)
Q Consensus        85 ~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~--  162 (382)
                      ++++|++.++++|.+++      |++|++     +++++|+|||++||++++++     +++++++.+|+|+.+++.+  
T Consensus       234 ~~~~I~~~al~~L~~~~------I~~v~~-----~~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g  297 (464)
T cd00309         234 AEKGIDDEALHYLAKLG------IMAVRR-----VRKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIG  297 (464)
T ss_pred             cCCCcCHHHHHHHHHCC------eEEEEe-----CCHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEc
Confidence            88889999999999877      789985     46899999999999999999     8889999999999999764  


Q ss_pred             -ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          163 -DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       163 -~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                       +++++|.++..                                   +.+|||+|||+|+.+++|++|+++||+++++++
T Consensus       298 ~~~~~~~~~~~~-----------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~  342 (464)
T cd00309         298 DEKYTFIEGCKG-----------------------------------GKVATILLRGATEVELDEAERSLHDALCAVRAA  342 (464)
T ss_pred             CeeEEEEEecCC-----------------------------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence             57778877653                                   358999999999999999999999999999999


Q ss_pred             hhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeC
Q 016809          242 VEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDA  316 (382)
Q Consensus       242 ~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~  316 (382)
                      ++++ +|||||++|+++++.|++++.. ++++++++++|++||++||++|++|||+|+.+++.+|++.|   ..++|+|.
T Consensus       343 ~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~  422 (464)
T cd00309         343 VEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDV  422 (464)
T ss_pred             HHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEEC
Confidence            9996 9999999999999999998776 78999999999999999999999999999999999999877   34789999


Q ss_pred             CCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016809          317 AKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV  358 (382)
Q Consensus       317 ~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~  358 (382)
                      .+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus       423 ~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  464 (464)
T cd00309         423 ETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV  464 (464)
T ss_pred             CCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence            999999999999999999999999999999999999999984

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=100.00  E-value=2.3e-52  Score=428.81  Aligned_cols=292  Identities=29%  Similarity=0.514  Sum_probs=267.4

Q ss_pred             EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHH-----------------------
Q 016809           11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTA-----------------------   67 (382)
Q Consensus        11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~-----------------------   67 (382)
                      ...+|++.+|+ ++++|++|++++.++       +|++.+++|+|++++++++....                       
T Consensus       162 ~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~  233 (485)
T PF00118_consen  162 IKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKY  233 (485)
T ss_dssp             EEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHH
T ss_pred             hhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhh
Confidence            45567777775 899999999999987       37888899999999999876655                       


Q ss_pred             HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccC
Q 016809           68 VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKV  147 (382)
Q Consensus        68 l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l  147 (382)
                      +.++++++.+.|++|||++++|++.++++|..|+      |.+++     ++++++|++||++||++++++     ++++
T Consensus       234 l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~------I~~i~-----~v~~~~l~~i~~~tg~~ii~~-----~~~l  297 (485)
T PF00118_consen  234 LKKILEKIINLGVNLIISQKSIDDEALQYLNKNG------ILVIR-----RVSKEDLERIARATGASIISS-----LDDL  297 (485)
T ss_dssp             HHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCT------HEEES-----SEHHHHHHHHHHHHTSBEBSS-----CGGS
T ss_pred             hccccceEeeeccceeeeecccccccchhhhhhh------hhccc-----cchHHHHHhhhcccCCcEecc-----cccc
Confidence            8899999999999999999999999999999998      46665     567999999999999999999     8899


Q ss_pred             CcCCCceeeEE---EEecceEEEEcC--CCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016809          148 NLDMLGTCKKV---TISKDDTVILDG--AGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA  222 (382)
Q Consensus       148 ~~~~lG~~~~v---~i~~~~~~~~~~--~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~  222 (382)
                      +++.+|+|+++   +++++++++|++  +.                                   .+..+||+|||+|+.
T Consensus       298 ~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~Till~g~t~~  342 (485)
T PF00118_consen  298 SDEDLGFCKSVEEREIGNKKYIFIEGIGCL-----------------------------------SSKICTILLRGPTEF  342 (485)
T ss_dssp             TGGGSEEEEEEEEEEETSSEEEEEEEHSES-----------------------------------SSSEEEEEEEESSHH
T ss_pred             cchhhhhhhhhhhccccccccccccccccc-----------------------------------ccCceEEEeccccch
Confidence            88889999999   456789999983  33                                   357899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016809          223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV  300 (382)
Q Consensus       223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v  300 (382)
                      +++|++++++||+++++++++++ +|||||++|++|++.|++++.. ++++++++++|++||+.||++|++|||+|+.++
T Consensus       343 ~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~  422 (485)
T PF00118_consen  343 ELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEV  422 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceee
Confidence            99999999999999999999988 9999999999999999888776 788999999999999999999999999999999


Q ss_pred             HHHHHhcC--CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016809          301 VGKLLEQD--NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP  361 (382)
Q Consensus       301 i~~l~~~~--~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~  361 (382)
                      +++|++.|  +.++|+|+.+|++.||.+.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus       423 ~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~  485 (485)
T PF00118_consen  423 ISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP  485 (485)
T ss_dssp             HHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred             ehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999854  57999999999999999999999999999999999999999999999998875

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-49  Score=371.42  Aligned_cols=298  Identities=24%  Similarity=0.381  Sum_probs=273.3

Q ss_pred             eEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC--------------CHH--------
Q 016809            9 VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS--------------NLT--------   66 (382)
Q Consensus         9 ~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~--------------~~~--------   66 (382)
                      .|++..||+++|| .+-+|+.+++.+-..        +|+.++||+||+.+++++              +..        
T Consensus       195 qIIK~~Gg~l~dS-fLDeGFlL~K~igv~--------qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~A  265 (527)
T KOG0363|consen  195 QIIKKLGGKLEDS-FLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKA  265 (527)
T ss_pred             eeehhcCCccccc-cccccceeccccCCC--------CcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHH
Confidence            3677899999997 799999999887653        688999999999999744              221        


Q ss_pred             ---HHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc
Q 016809           67 ---AVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD  143 (382)
Q Consensus        67 ---~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~  143 (382)
                         .+...+++|.+.|+|+.|..+-|.+...++|...+      |++|....|..     +|||+.+||+.+.|.     
T Consensus       266 EkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dag------i~aIEHADFdG-----iERLalvtGGeI~ST-----  329 (527)
T KOG0363|consen  266 EKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAG------IMAIEHADFDG-----IERLALVTGGEIVST-----  329 (527)
T ss_pred             HHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcC------cceeecccchh-----HHHHhhcccceeeec-----
Confidence               24567899999999999999999999999999888      78998887754     699999999999999     


Q ss_pred             cccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016809          144 LEKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS  220 (382)
Q Consensus       144 l~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t  220 (382)
                      +++++...||+|+.++   +.++++.-|+|+.                                   .|..|||++||+|
T Consensus       330 Fd~p~~~klG~C~~IeeimiGed~li~FSGv~-----------------------------------~GeActIVlrGat  374 (527)
T KOG0363|consen  330 FDNPELVKLGECDLIEEIMIGEDKLIKFSGVK-----------------------------------LGEACTIVLRGAT  374 (527)
T ss_pred             cCCcchhccccchhhHHHhcCccceeeecccc-----------------------------------cccceEEEEeccc
Confidence            9999999999999988   6789999999976                                   3568999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      .+++||.+|++|||||++....++. ++.|||+.||-.|..+.+++.. ++++..++.+|++||.++|.+||.|||||+.
T Consensus       375 ~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsa  454 (527)
T KOG0363|consen  375 QQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSA  454 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHH
Confidence            9999999999999999999999998 9999999999999999999887 8999999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCC
Q 016809          299 VVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKE  366 (382)
Q Consensus       299 ~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~  366 (382)
                      +++++|++.|   ...+|+|+++|++.||.+.||+|++.+|...+.+|.|+|.+|||+|.||.+.|+++.+
T Consensus       455 elva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~  525 (527)
T KOG0363|consen  455 ELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERER  525 (527)
T ss_pred             HHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence            9999999988   4789999999999999999999999999999999999999999999999999998765

>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-47  Score=360.80  Aligned_cols=291  Identities=19%  Similarity=0.288  Sum_probs=260.0

Q ss_pred             EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC-------------CCHHH----------
Q 016809           11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA----------   67 (382)
Q Consensus        11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I-------------~~~~~----------   67 (382)
                      .++.||+++|. ++++|++|++......       .|..+++++|-++.+.|             +++.+          
T Consensus       205 vkklGgtvdDt-e~i~glvl~~~~~~~~-------gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~  276 (534)
T KOG0358|consen  205 VKKLGGTVDDT-ELIKGLVLTQKASKSA-------GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQ  276 (534)
T ss_pred             HHhhCCccchh-hhhcceEEeeecccCC-------CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHH
Confidence            35689999886 9999999998765432       57778888888877753             34433          


Q ss_pred             -HHHHHHHHHHcCCCEEEEecCC-----cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCC
Q 016809           68 -VVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELG  141 (382)
Q Consensus        68 -l~~~le~i~~~~~~lvI~~~~i-----~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~  141 (382)
                       +++++++|+++|+||++++++|     +|.++|||.+-+      |++|+     ++.++++|.+|+.+|++++.+   
T Consensus       277 YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klk------imvik-----dieRediefick~l~c~Pia~---  342 (534)
T KOG0358|consen  277 YILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLK------IMVIK-----DIEREDIEFICKTLGCKPIAD---  342 (534)
T ss_pred             HHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCc------EEEEc-----cccHhhHHHHHhhcCCeecch---
Confidence             4688999999999999999976     888888886555      89998     778999999999999999999   


Q ss_pred             CccccCCcCCCceeeEEEEe----cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEec
Q 016809          142 MDLEKVNLDMLGTCKKVTIS----KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIG  217 (382)
Q Consensus       142 ~~l~~l~~~~lG~~~~v~i~----~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lr  217 (382)
                        ++.++++.||+++.++..    +.+++-+.|+.++                                  |.+++|++|
T Consensus       343 --id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~----------------------------------g~tvsil~R  386 (534)
T KOG0358|consen  343 --IDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA----------------------------------GRTVSILLR  386 (534)
T ss_pred             --hhhcChhhcCcchhhhhcccCCCccEEEEEEeecC----------------------------------CCceEEEEe
Confidence              999999999999999854    3577888876542                                  679999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCC
Q 016809          218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGV  295 (382)
Q Consensus       218 G~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~  295 (382)
                      |+++..++|.+|++|||||++|+.++.. ++||||+.|+.+|..|..++.+ .+.+.|++++|++|||.||.+||+|||+
T Consensus       387 Gsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGL  466 (534)
T KOG0358|consen  387 GSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGL  466 (534)
T ss_pred             cCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCC
Confidence            9999999999999999999999999998 9999999999999999999888 7889999999999999999999999999


Q ss_pred             CHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016809          296 EGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE  359 (382)
Q Consensus       296 d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~  359 (382)
                      +|..++++|++.|   ..+.|++++.|.+.||++..|+.|+.|-.++++.|+|++.+||+||+|+..
T Consensus       467 npI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a  533 (534)
T KOG0358|consen  467 NPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA  533 (534)
T ss_pred             ChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence            9999999999988   488999999999999999999999999999999999999999999999864

>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-44  Score=352.60  Aligned_cols=298  Identities=21%  Similarity=0.294  Sum_probs=264.6

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHH-------
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVV-------   69 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~-------   69 (382)
                      +-+..|++++|| .++.|++|++.....         ..+-+..+|.++.||             |+++++++       
T Consensus       199 VcKi~Gg~l~~S-~Vv~GmVfkr~~eG~---------v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe  268 (537)
T KOG0362|consen  199 VCKILGGGLEDS-CVVCGMVFKRDPEGE---------VKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEE  268 (537)
T ss_pred             EEEEecCCcccc-eeeEEEEeccccCCc---------ccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccH
Confidence            356789999987 899999999987654         244556778887777             66777654       


Q ss_pred             ----HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           70 ----RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        70 ----~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                          ..++.|..+|+++|++...+++.+|+++  |++    +|+++|.++     +.+|.|||+..||++.++     +.
T Consensus       269 ~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~S-----k~eLrrlcrtvGA~~l~r-----l~  332 (537)
T KOG0362|consen  269 ALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQINS-----KFDLRRLCRTVGATALPR-----LF  332 (537)
T ss_pred             HHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEecc-----HhhHHHHHHHcCCccchh-----cc
Confidence                4567888899999999999999999999  765    489999885     899999999999999999     88


Q ss_pred             cCCcCCCceeeEEEEe---cceEEEEc-CCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016809          146 KVNLDMLGTCKKVTIS---KDDTVILD-GAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE  221 (382)
Q Consensus       146 ~l~~~~lG~~~~v~i~---~~~~~~~~-~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~  221 (382)
                      .+.+..+|+|++|...   ...++.|. +++                                   .++++||+|||+|+
T Consensus       333 ~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~-----------------------------------~~~~~TvVLRgst~  377 (537)
T KOG0362|consen  333 PPAPEELGYCDSVSTQEIGDTLVVVFRWEST-----------------------------------GTRVATVVLRGATQ  377 (537)
T ss_pred             CCCCccccccceeeeeecCCceEEEEeeccC-----------------------------------CCceeEEEEcccch
Confidence            8999999999999965   35666665 332                                   24689999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016809          222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV  299 (382)
Q Consensus       222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~  299 (382)
                      ..+|+.||+++|++++.+..++++ ++||+|++|++|+++|..++.. ++..|++++.|++||+.+|++|++|||++..+
T Consensus       378 s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~e  457 (537)
T KOG0362|consen  378 SILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTE  457 (537)
T ss_pred             hhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHH
Confidence            999999999999999999999999 9999999999999999999887 89999999999999999999999999999999


Q ss_pred             HHHHHHhcCC--CceeEeCCCC-ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCC
Q 016809          300 VVGKLLEQDN--TDLGYDAAKG-EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP  368 (382)
Q Consensus       300 vi~~l~~~~~--~~~Gid~~~~-~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~  368 (382)
                      ++++|++.|.  .+.|+|+... ...|+.++||||-+.+|.++++.|+++|+++|++|+||+++|...|+||
T Consensus       458 via~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~  529 (537)
T KOG0362|consen  458 VIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPP  529 (537)
T ss_pred             HHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCCCC
Confidence            9999999883  6679998776 5999999999999999999999999999999999999999999988886

>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-46  Score=357.82  Aligned_cols=295  Identities=21%  Similarity=0.289  Sum_probs=268.5

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC------------------------H
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN------------------------L   65 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~------------------------~   65 (382)
                      +.+.+||.++|+ ++++|+.+.+...||.       |+..++||+|+++|+++..                        -
T Consensus       197 veKvpgg~l~~s-~vl~Gv~~nkdv~Hpk-------mrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqiee  268 (527)
T KOG0364|consen  197 VEKVPGGLLEDS-CVLKGVMINKDVTHPK-------MRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEE  268 (527)
T ss_pred             ccccCccccccc-ceecceeeccccCcHH-------HHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhH
Confidence            467899999997 8999999999999984       7888999999999998641                        1


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           66 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        66 ~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                      +++..+++.|....++|||+.++++|.+.+||.+++      +.++|     +.+|.|-.|++++||++++++     ++
T Consensus       269 e~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~------iT~~r-----r~rKtDn~ria~acga~iv~r-----pe  332 (527)
T KOG0364|consen  269 EQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKAN------ITAIR-----RLRKTDNNRIARACGARIVNR-----PE  332 (527)
T ss_pred             HHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcC------chhhh-----hhhccccchhhhhcCceeccC-----hh
Confidence            235677888998999999999999999999999998      56665     678999999999999999999     99


Q ss_pred             cCCcCCCce-eeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016809          146 KVNLDMLGT-CKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE  221 (382)
Q Consensus       146 ~l~~~~lG~-~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~  221 (382)
                      ++...+.|+ |+.+++.   +++|+||+.|.+|+                                   .|||++||||+
T Consensus       333 dl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pk-----------------------------------aCtillrg~sk  377 (527)
T KOG0364|consen  333 DLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPK-----------------------------------ACTILLRGPSK  377 (527)
T ss_pred             hCchhccCcccceeeeeccCchhhhhhhhcCCCc-----------------------------------ceEEEeccCch
Confidence            999999996 8888875   57999999999874                                   69999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016809          222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV  299 (382)
Q Consensus       222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~  299 (382)
                      .+++|.+|.+.||+.+.|+.+-++ ++|||||+||.+|+.|.+.+.. ++-++..+++.+.||+.+||+|++|+|.++..
T Consensus       378 dil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir  457 (527)
T KOG0364|consen  378 DILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIR  457 (527)
T ss_pred             hHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHH
Confidence            999999999999999999999999 9999999999999999987666 78899999999999999999999999999999


Q ss_pred             HHHHHHhcCC---CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016809          300 VVGKLLEQDN---TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE  363 (382)
Q Consensus       300 vi~~l~~~~~---~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~  363 (382)
                      +++.++..|.   ..+|+|..+|.++||.+.++|+|+.+|.+..++|+++|+++||||++++..++.
T Consensus       458 ~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~  524 (527)
T KOG0364|consen  458 ALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR  524 (527)
T ss_pred             HHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence            9999998873   567899999999999999999999999999999999999999999999886654

>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.8e-46  Score=347.22  Aligned_cols=243  Identities=18%  Similarity=0.268  Sum_probs=225.7

Q ss_pred             HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccC
Q 016809           68 VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKV  147 (382)
Q Consensus        68 l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l  147 (382)
                      +.+++++++++|.+++||+|+|||+|.|+|..|++      -||||.+-     -++|-||++||++++++     ++++
T Consensus       144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~l------pavrwVGG-----pEiEliAiaT~grIVpr-----F~eL  207 (400)
T KOG0357|consen  144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL------PAVRWVGG-----PEIELIAIATGGRIVPR-----FSEL  207 (400)
T ss_pred             HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC------CceeecCC-----cceEEEEeecCCeeecc-----Hhhh
Confidence            66789999999999999999999999999999995      58888763     36799999999999999     9999


Q ss_pred             CcCCCceeeEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016809          148 NLDMLGTCKKVTI-----SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA  222 (382)
Q Consensus       148 ~~~~lG~~~~v~i-----~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~  222 (382)
                      +++.||+|+.|..     ++++..+++.|+++                                   +.+||.|||+|+.
T Consensus       208 ~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-----------------------------------kaVTifvRg~Nkm  252 (400)
T KOG0357|consen  208 TAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-----------------------------------KAVTIFVRGGNKM  252 (400)
T ss_pred             CHhhccccceEEEEecccccceEEEEEecCCC-----------------------------------ceEEEEEecCcce
Confidence            9999999999884     36899999999874                                   5789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016809          223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV  300 (382)
Q Consensus       223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v  300 (382)
                      +++|.+|++|||||++|+.+++. +|+|||++|+.||.++.+-+.. ++.+||++++|++||++||-.||+|||++|++.
T Consensus       253 ii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~  332 (400)
T KOG0357|consen  253 IIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIET  332 (400)
T ss_pred             eHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhh
Confidence            99999999999999999999999 9999999999999999988877 899999999999999999999999999999999


Q ss_pred             HHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016809          301 VGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP  361 (382)
Q Consensus       301 i~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~  361 (382)
                      ++++++.+    +..+|+|+.-..-.||.+.+|+|++..|++.+..||+++.|||+||+|+....
T Consensus       333 ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~  397 (400)
T KOG0357|consen  333 LSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGE  397 (400)
T ss_pred             hhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence            99998864    68899999888889999999999999999999999999999999999987643

>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-45  Score=354.19  Aligned_cols=302  Identities=19%  Similarity=0.289  Sum_probs=266.0

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHH-------
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVV-------   69 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~-------   69 (382)
                      |.+-.|.+.-|| .++.|+.+++...+..       |+..+.|+||+++|+.             |.+++++.       
T Consensus       200 ILkahG~s~~eS-~l~~GyaLnc~~asq~-------m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~  271 (545)
T KOG0360|consen  200 ILKAHGKSQIES-MLLPGYALNCSVASQM-------MPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQ  271 (545)
T ss_pred             EEecCCccchhh-eeecceeeeccHhhhc-------cccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHh
Confidence            456688888876 7999999999888765       7888899999999996             44565543       


Q ss_pred             ----HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc-c
Q 016809           70 ----RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD-L  144 (382)
Q Consensus        70 ----~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~-l  144 (382)
                          +-+++|...|+|||+++++|||.++++|++.+      ++|||     +..+++|++|+++||++++++...+. -
T Consensus       272 ~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veag------amAVr-----R~~k~dlk~iakatGat~~sSla~l~ge  340 (545)
T KOG0360|consen  272 DITKERIKKILATGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RCKKEDLKRIAKATGATLLSSLANLEGE  340 (545)
T ss_pred             HhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcc------hhhhH-----HHHHHHHHHHHHhhCCeeeehhhccccc
Confidence                33678999999999999999999999999998      68888     66799999999999999999922221 1


Q ss_pred             ccCCcCCCceeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016809          145 EKVNLDMLGTCKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE  221 (382)
Q Consensus       145 ~~l~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~  221 (382)
                      +.+.+..+|+|+.|.+   .++++.++.+.+-                                    ..|.|+|||+|+
T Consensus       341 etf~~~~lG~a~evvqeri~dde~ilikg~ka------------------------------------~~aSiILrgaNd  384 (545)
T KOG0360|consen  341 ETFEPASLGSADEVVQERIGDDELILIKGTKA------------------------------------TSASIILRGAND  384 (545)
T ss_pred             cccChhhccchhHHHHHhcccceeEEeccCcc------------------------------------ceeeEEEecCCc
Confidence            2457888999999985   4688888877431                                    378999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016809          222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV  299 (382)
Q Consensus       222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~  299 (382)
                      +.+||.+|++|||+|++|..++++ +|||||++|.+|+-+|++|+.+ ..++|+++--|+.||.+||++|+-||..|+.+
T Consensus       385 ~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dste  464 (545)
T KOG0360|consen  385 FMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTE  464 (545)
T ss_pred             ccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhcccccc
Confidence            999999999999999999999999 9999999999999999999888 67999999999999999999999999999999


Q ss_pred             HHHHHHhcCC-----------CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCC
Q 016809          300 VVGKLLEQDN-----------TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKE  366 (382)
Q Consensus       300 vi~~l~~~~~-----------~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~  366 (382)
                      +++++++.|+           .|+|+|+.+|++.|.++.|+++|..+|..+|+.|+|+|..+||||++|.-.|..+..
T Consensus       465 lvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~~  542 (545)
T KOG0360|consen  465 LVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQVA  542 (545)
T ss_pred             ccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcccccc
Confidence            9999999872           589999999999999999999999999999999999999999999999776666554

>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-41  Score=321.98  Aligned_cols=287  Identities=21%  Similarity=0.350  Sum_probs=253.0

Q ss_pred             eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CHHH-----------HH
Q 016809           14 DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTA-----------VV   69 (382)
Q Consensus        14 ~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~~~-----------l~   69 (382)
                      ...+..|. .+++|+++++|..||.       ||+.++|+.||+++..++             +.+|           +.
T Consensus       194 q~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~  265 (520)
T KOG0359|consen  194 QHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFID  265 (520)
T ss_pred             ccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHH
Confidence            33455665 7999999999999996       799999999999998754             2222           12


Q ss_pred             HHHHHHHHcC---CCE-EEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           70 RVLELALKRQ---RPL-LIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        70 ~~le~i~~~~---~~l-vI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                      .-+.+|.+.+   +.+ ||.+++|||..|..|++++      |+|+|+     -++..||||..+||+..+++     ++
T Consensus       266 ~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~g------IlaLRR-----AKRRNmERL~lacGG~a~ns-----vd  329 (520)
T KOG0359|consen  266 QRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSG------ILALRR-----AKRRNMERLVLACGGEAVNS-----VD  329 (520)
T ss_pred             HHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcc------hHHHHH-----HhhhhHHHHHHhhccceecc-----cc
Confidence            2334555444   334 5668899999999999998      688884     46889999999999999999     99


Q ss_pred             cCCcCCCceeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016809          146 KVNLDMLGTCKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA  222 (382)
Q Consensus       146 ~l~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~  222 (382)
                      ++++++||+|+.++.   ++++|+|+++|++|                                   +.|||+++|||++
T Consensus       330 dLtp~~LG~aglVye~tlGEEkfTFIE~~~~p-----------------------------------~S~TiLikgpnkh  374 (520)
T KOG0359|consen  330 DLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP-----------------------------------SSVTILIKGPNKH  374 (520)
T ss_pred             cCChhhccccceeEEeeccceeeEeeecCCCC-----------------------------------cceEEEEeCCccc
Confidence            999999999999995   58999999999987                                   3689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016809          223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV  300 (382)
Q Consensus       223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v  300 (382)
                      .+.+.+++++|++++++++++++ ++||+|+.|..++..|+....+ +++.++++++|++||..+|++|++|+|+|+.+.
T Consensus       375 t~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~  454 (520)
T KOG0359|consen  375 TITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQET  454 (520)
T ss_pred             hHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHH
Confidence            99999999999999999999999 9999999999999999976665 789999999999999999999999999999999


Q ss_pred             HHHHHhcCC-CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016809          301 VGKLLEQDN-TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE  359 (382)
Q Consensus       301 i~~l~~~~~-~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~  359 (382)
                      +.+|...|. ...|+|+.+|+..+....||||.+.||.+.|.+++-.|+.||-+|+|+.+
T Consensus       455 l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA  514 (520)
T KOG0359|consen  455 LVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA  514 (520)
T ss_pred             HHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence            999988773 35799999999999999999999999999999999999999999999976

>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1

Probab=99.96  E-value=5.2e-28  Score=229.55  Aligned_cols=177  Identities=16%  Similarity=0.256  Sum_probs=154.7

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC------HHH-----------HHHHH
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN------LTA-----------VVRVL   72 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~------~~~-----------l~~~l   72 (382)
                      |.+.+|+++.|+ ++++|+++++++.++.       |++.++||+|++++++++.      +++           +..++
T Consensus        52 I~ki~Ggs~~dS-~li~Gvvi~k~~~~~~-------m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v  123 (261)
T cd03334          52 IKKIPGGSPSDS-EVVDGVVFTKNVAHKR-------MPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLV  123 (261)
T ss_pred             EEEecCCCHHHc-EEEeeEEEeCCCCCcc-------CCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            466799999986 8999999999998864       7899999999999998752      222           34678


Q ss_pred             HHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc-cCCcCC
Q 016809           73 ELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE-KVNLDM  151 (382)
Q Consensus        73 e~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~-~l~~~~  151 (382)
                      ++|++.|++|||++++|++.++++|.+++      |++|++     +++++|++||++|||+++++     +. .++++.
T Consensus       124 ~kI~~~g~nvIl~~k~I~~~a~~~l~k~g------I~~v~~-----v~~~dl~rIa~~tGa~ii~~-----i~~~~~~~~  187 (261)
T cd03334         124 SRIVALRPDVILVEKSVSRIAQDLLLEAG------ITLVLN-----VKPSVLERISRCTGADIISS-----MDDLLTSPK  187 (261)
T ss_pred             HHHHhcCCCEEEECCccCHHHHHHHHHCC------CEEEEe-----cCHHHHHHHHHHhCCEEecC-----hhhhcCccc
Confidence            89999999999999999999999999988      688884     46899999999999999998     54 678889


Q ss_pred             CceeeEEEEec--------ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhH
Q 016809          152 LGTCKKVTISK--------DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAE  223 (382)
Q Consensus       152 lG~~~~v~i~~--------~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~  223 (382)
                      ||+|+.|++.+        ++++||++|..+                                   ..+||+|||+|+.+
T Consensus       188 lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~-----------------------------------~~~TIlLRG~t~~~  232 (261)
T cd03334         188 LGTCESFRVRTYVEEHGRSKTLMFFEGCPKE-----------------------------------LGCTILLRGGDLEE  232 (261)
T ss_pred             CcCcceEEEEEecCcCCCceeEEEEecCCCC-----------------------------------ceeEEEEECCCHHH
Confidence            99999999753        489999998743                                   47999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 016809          224 VGEKKDRVTDALNATKAAVEEG  245 (382)
Q Consensus       224 l~E~~r~l~dal~~~~~a~~~g  245 (382)
                      ++|.+|+++||+++++++..+.
T Consensus       233 lde~eR~i~Dal~v~~~~~le~  254 (261)
T cd03334         233 LKKVKRVVEFMVFAAYHLKLET  254 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999988765

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.

>cd03333 chaperonin_like chaperonin_like superfamily

Probab=99.95  E-value=2e-26  Score=211.92  Aligned_cols=162  Identities=32%  Similarity=0.505  Sum_probs=143.9

Q ss_pred             CceE--EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q 016809            7 EGVI--TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI   84 (382)
Q Consensus         7 ~g~i--~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI   84 (382)
                      .+.|  .+.+||++.|+ ++++|++|++++.+|+       |++.++||+|++++++++.                 ||+
T Consensus        43 ~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~-------m~~~~~n~~Ill~~~~le~-----------------vii   97 (209)
T cd03333          43 LGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY-------MPKRLENAKILLLDCPLEY-----------------VVI   97 (209)
T ss_pred             hHHEEEEEecCcChhhc-eeEeeEEEeccccCCC-------CCeEcCCCcEEEEeCCeeE-----------------EEE
Confidence            3455  45689999986 8999999999999986       6888999999999999887                 888


Q ss_pred             EecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEec--
Q 016809           85 VAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK--  162 (382)
Q Consensus        85 ~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~--  162 (382)
                      ++++|++.++++|.+++      |++|++     +++++|+|||++|||+++++     +++++++.||+|+++++.+  
T Consensus        98 ~~~~I~~~al~~l~~~~------I~~v~~-----~~~~~l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~  161 (209)
T cd03333          98 AEKGIDDLALHYLAKAG------IMAVRR-----VKKEDLERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIG  161 (209)
T ss_pred             ecCcccHHHHHHHHHCC------CEEEEe-----CCHHHHHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEEC
Confidence            89999999999999887      788984     56899999999999999999     8899999999999999874  


Q ss_pred             -ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          163 -DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       163 -~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                       +++++|.+|..                                   +..|||+|||+|+.+++|.+|+++||+++++++
T Consensus       162 ~~~~~~~~~~~~-----------------------------------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~  206 (209)
T cd03333         162 EEKLTFIEGCKG-----------------------------------GKAATILLRGATEVELDEVKRSLHDALCAVRAA  206 (209)
T ss_pred             CeEEEEEEcCCC-----------------------------------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHH
Confidence             46888887754                                   358999999999999999999999999999999


Q ss_pred             hhc
Q 016809          242 VEE  244 (382)
Q Consensus       242 ~~~  244 (382)
                      +++
T Consensus       207 ~~~  209 (209)
T cd03333         207 VEE  209 (209)
T ss_pred             hhC
Confidence            864

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.

>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]

Probab=99.37  E-value=3.8e-12  Score=139.15  Aligned_cols=185  Identities=16%  Similarity=0.272  Sum_probs=151.2

Q ss_pred             EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC---------CHHH--------HHHHHH
Q 016809           11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS---------NLTA--------VVRVLE   73 (382)
Q Consensus        11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~---------~~~~--------l~~~le   73 (382)
                      ...+||+..|+ +++.|+++.+...+..       |..++++|+|+++.+++.         +++.        +...+.
T Consensus       367 K~I~~g~~~dS-~vi~Gvv~sKn~~~k~-------M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~va  438 (1598)
T KOG0230|consen  367 KCVAGGSRVDS-EVIKGVVCSKNVAHKR-------MATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVA  438 (1598)
T ss_pred             EEecCCCcccc-eeeeEEEeecchhhhh-------hhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHH
Confidence            44688888886 9999999999988764       778899999999998743         3322        334567


Q ss_pred             HHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCc
Q 016809           74 LALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLG  153 (382)
Q Consensus        74 ~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG  153 (382)
                      +|.....+++++.++++..|.++|...++     .+++      ++++..|+||+++|||.|+++     ++.++...||
T Consensus       439 rI~s~~p~vllVeksVS~~aqe~L~~k~I-----~lvl------nvK~s~leRIsR~tga~I~~s-----iDslt~~klg  502 (1598)
T KOG0230|consen  439 RIESLRPDVLLVEKSVSRIAQELLLDKGI-----SLVL------NVKRSLLERISRCTGADIVPS-----VDSLTSQKLG  502 (1598)
T ss_pred             HHHhcCCCeEEEechHHHHHHHHhhccCe-----EEEE------eccHHHHHHHHHHhcCceecc-----hhhhhccccC
Confidence            77778899999999999999999977664     2232      567889999999999999999     8889999999


Q ss_pred             eeeEEEEec--------ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHH
Q 016809          154 TCKKVTISK--------DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVG  225 (382)
Q Consensus       154 ~~~~v~i~~--------~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~  225 (382)
                      +|..+++.+        ..++||.+|+.+                                   ..|||++||.+..++.
T Consensus       503 ~C~~F~v~~~~e~hk~sKTlmffegc~~~-----------------------------------lG~TiLLrG~~~~eLk  547 (1598)
T KOG0230|consen  503 YCELFRVENYVEEHKPSKTLMFFEGCPKP-----------------------------------LGCTILLRGDSLEELK  547 (1598)
T ss_pred             CCccHhhhhhhhcccchhhhHHhhcCCCC-----------------------------------CCceEEecCCCHHHHH
Confidence            999999752        467788998864                                   3589999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-hhcCccccchHHH
Q 016809          226 EKKDRVTDALNATKAA-VEEGIVPGGGVAL  254 (382)
Q Consensus       226 E~~r~l~dal~~~~~a-~~~gvvpGGGa~e  254 (382)
                      ++++-+.-++.++.+. ++..++.--|+..
T Consensus       548 kVK~Vvq~~v~aay~l~LE~SflaDe~asi  577 (1598)
T KOG0230|consen  548 KVKHVVQYLVFAAYHLALETSFLADEGASI  577 (1598)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence            9999999999998855 4555777777754

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.0007  Score=70.57  Aligned_cols=94  Identities=48%  Similarity=0.713  Sum_probs=82.3

Q ss_pred             HHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCC
Q 016809           72 LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDM  151 (382)
Q Consensus        72 le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~  151 (382)
                      ++...+.+.++++++++...+++..++.|.+++..++++|+.|+|+|.++..|++++++|+.++.+++.+     .....
T Consensus       237 ~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~  311 (524)
T COG0459         237 LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG-----ERLAK  311 (524)
T ss_pred             ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH-----HHHHH
Confidence            5666677788999999999999999999999999999999999999999999999999999999988632     25677


Q ss_pred             CceeeEEEEecceEEEEcC
Q 016809          152 LGTCKKVTISKDDTVILDG  170 (382)
Q Consensus       152 lG~~~~v~i~~~~~~~~~~  170 (382)
                      +|.|..+.+.++.+....|
T Consensus       312 ~~ga~~v~~~~d~t~~~~G  330 (524)
T COG0459         312 LGGAKIVSVLKDLTTIVLG  330 (524)
T ss_pred             ccCceEEeecccCceeecC
Confidence            9999999998887766665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	382
1iok_A	545	Crystal Structure Of Chaperonin-60 From Paracoccus		1e-115
1kp8_A	547	Structural Basis For Groel-Assisted Protein Folding		1e-102
2eu1_A	548	Crystal Structure Of The Chaperonin Groel-E461k Len		1e-102
1aon_A	547	Crystal Structure Of The Asymmetric Chaperonin Comp		1e-102
1sx3_A	525	Groel14-(Atpgammas)14 Length = 525		1e-102
1gr5_A	547	Solution Structure Of Apo Groel By Cryo-Electron Mi		1e-101
3c9v_A	526	C7 Symmetrized Structure Of Unliganded Groel At 4.7		1e-101
2yey_A	524	Crystal Structure Of The Allosteric-Defective Chape		1e-101
1pcq_A	524	Crystal Structure Of Groel-Groes Length = 524		1e-101
1ss8_A	524	Groel Length = 524		1e-101
1grl_A	548	The Crystal Structure Of The Bacterial Chaperonin G		1e-101
1j4z_A	547	Structural And Mechanistic Basis For Allostery In T		1e-101
1oel_A	547	Conformational Variability In The Refined Structure		1e-101
3cau_A	526	D7 Symmetrized Structure Of Unliganded Groel At 4.2		1e-101
4aaq_A	548	Atp-Triggered Molecular Mechanics Of The Chaperonin		1e-101
1we3_A	543	Crystal Structure Of The Chaperonin Complex Cpn60CP		2e-98
1sjp_A	504	Mycobacterium Tuberculosis Chaperonin60.2 Length =		1e-89
3rtk_A	546	Crystal Structure Of Cpn60.2 From Mycobacterium Tub		2e-89
1la1_A	192	Gro-El Fragment (Apical Domain) Comprising Residues		1e-61
1fya_A	193	Crystal Structure Of The Hexa-Substituted Mutant Of		1e-59
1kid_A	203	Groel (Hsp60 Class) Fragment (Apical Domain) Compri		1e-59
1fy9_A	193	Crystal Structure Of The Hexa-Substituted Mutant Of		2e-59
3osx_A	201	Crystal Structure Of Apical Domain Of Insecticidal		3e-57
3m6c_A	194	Crystal Structure Of Mycobacterium Tuberculosis Gro		1e-51
1jon_A	155	Groel (Hsp60 Class) Fragment Comprising Residues 19		7e-46
1dk7_A	146	Crystal Structure Of An Isolated Apical Domain Of G		7e-44
1srv_A	145	Thermus Thermophilus Groel (Hsp60 Class) Fragment (		1e-39

>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545

Iteration: 1
 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/368 (55%), Positives = 267/368 (72%), Gaps = 2/368 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M++VG EGVIT+ + K +  E+EVVEGM+ DRGY+SPYF+TN      ELED  IL+HEK
Sbjct: 166 MQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEK 225
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+S+L  +V +LE  ++ Q+PLLIVAEDVE EALATL++NKLR G+K+ A+KAPGFG+ R
Sbjct: 226 KLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRR 285
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A+LTGG +I+E+LGM LE V +DMLG  KKV+I+KD+T I+DGAG+K  IE R
Sbjct: 286 KAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEAR 345
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+A
Sbjct: 346 VSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRA 405
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AV+EGIV GGGV            S AN DQ  G+ II+ AL+ P+  I           
Sbjct: 406 AVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVV 465
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
             K+ E  +   G++A   EY DM K G+IDP KV+RTAL DAASV+ L+ TTEA++ E 
Sbjct: 466 AGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEK 525
Query: 361 PKEEKEAP 368
           P  E +AP
Sbjct: 526 P--EPKAP 531

>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547

Iteration: 1
 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/364 (52%), Positives = 253/364 (69%), Gaps = 1/364 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 PKEE 364
           PK +
Sbjct: 524 PKND 527

>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548

Iteration: 1
 Score =  367 bits (941), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/364 (52%), Positives = 253/364 (69%), Gaps = 1/364 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 166 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 225
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 226 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 285
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 286 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 345
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 405
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 406 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEKPSVV 465
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 466 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 524
Query: 361 PKEE 364
           PK +
Sbjct: 525 PKND 528

>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547

Iteration: 1
 Score =  367 bits (941), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/364 (52%), Positives = 253/364 (69%), Gaps = 1/364 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 PKEE 364
           PK +
Sbjct: 524 PKND 527

>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525

Iteration: 1
 Score =  366 bits (940), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/362 (52%), Positives = 252/362 (69%), Gaps = 1/362 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 PK 362
           PK
Sbjct: 524 PK 525

>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/364 (52%), Positives = 253/364 (69%), Gaps = 1/364 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 PKEE 364
           PK +
Sbjct: 524 PKND 527

>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/362 (52%), Positives = 252/362 (69%), Gaps = 1/362 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 PK 362
           PK
Sbjct: 524 PK 525

>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524

Iteration: 1
 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/361 (52%), Positives = 251/361 (69%), Gaps = 1/361 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNKDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 P 361
           P
Sbjct: 524 P 524

>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524

Iteration: 1
 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/361 (52%), Positives = 251/361 (69%), Gaps = 1/361 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 P 361
           P
Sbjct: 524 P 524

>pdb|1SS8|A Chain A, Groel Length = 524

Iteration: 1
 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/361 (52%), Positives = 251/361 (69%), Gaps = 1/361 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 P 361
           P
Sbjct: 524 P 524

>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548

Iteration: 1
 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/364 (51%), Positives = 252/364 (69%), Gaps = 1/364 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 166 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 225
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALAT ++N +R  +KV A+KAPGFG+ R
Sbjct: 226 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTMRGIVKVAAVKAPGFGDRR 285
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 286 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 345
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 405
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 406 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 465
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 466 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 524
Query: 361 PKEE 364
           PK +
Sbjct: 525 PKND 528

>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547

Iteration: 1
 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/364 (51%), Positives = 252/364 (69%), Gaps = 1/364 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV  AL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 PKEE 364
           PK +
Sbjct: 524 PKND 527

>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547

Iteration: 1
 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/364 (51%), Positives = 252/364 (69%), Gaps = 1/364 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALAT ++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 PKEE 364
           PK +
Sbjct: 524 PKND 527

>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526

Iteration: 1
 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/362 (52%), Positives = 251/362 (69%), Gaps = 1/362 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALAT ++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRR 284
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523
Query: 361 PK 362
           PK
Sbjct: 524 PK 525

>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548

Iteration: 1
 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/364 (51%), Positives = 252/364 (69%), Gaps = 1/364 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 166 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 225
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 226 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 285
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 286 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 345
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV  AL+AT+A
Sbjct: 346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRA 405
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEG+V GGGV               N DQ +G+++   A++ P+  I           
Sbjct: 406 AVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 465
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 466 ANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 524
Query: 361 PKEE 364
           PK +
Sbjct: 525 PKND 528

>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543

Iteration: 1
 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/370 (49%), Positives = 253/370 (68%), Gaps = 2/370 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEG+IT+ + K+L  EL+ VEG + D+GYISPYF+TN +  +  LED  IL+ EK
Sbjct: 164 MEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEK 223
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+SN+  ++ +LE   +  +PLLI+AEDVE EALATL++NKLR  + V A+KAPGFG+ R
Sbjct: 224 KVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRR 283
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           K  ++D+A +TGG +I+EELG  LE   L MLG  ++V I+KD+T I+ G G K+ IE R
Sbjct: 284 KEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEAR 343
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
              I+  +E + S+Y +EKLQERLAKL+GGVAV+++G A+E E+ EKK R  DALNAT+A
Sbjct: 344 INGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRA 403
Query: 241 AVEEGIVPGGGVX-XXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXX 299
           AVEEGIVPGGGV                  D+  G +I++ AL+ P   I          
Sbjct: 404 AVEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSV 463
Query: 300 XXXKLL-EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 358
              ++L E  N   G++AA GE+VDMV++GI+DP KV R+AL +AAS+ +L+ TTEA+V 
Sbjct: 464 IVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVA 523
Query: 359 ELPKEEKEAP 368
           E P++++  P
Sbjct: 524 EKPEKKESTP 533

>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504

Iteration: 1
 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 172/365 (47%), Positives = 242/365 (66%), Gaps = 2/365 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVG EGVIT+ +  T   +LE+ EGM+ D+GYIS YF+T+ + Q+  LEDP IL+   
Sbjct: 122 MDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSS 181
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+S +  ++ +LE  +   +PLLI+AEDVE EAL+TL++NK+R   K  A+KAPGFG+ R
Sbjct: 182 KVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRR 241
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A+LTGG +I+EE+G+ LE  +L +LG  +KV ++KD+T I++GAGD  +I  R
Sbjct: 242 KAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGR 301
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IENS SDYD+EKLQERLAKL+GGVAV+K G A+E E+ E+K R+ DA+   KA
Sbjct: 302 VAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKA 361
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEGIV GGGV                 D+  G  I++ AL+ P+  I           
Sbjct: 362 AVEEGIVAGGGVTLLQAAPTLDELKLEG-DEATGANIVKVALEAPLKQIAFNSGLEPGVV 420
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
             K +       G +A  G Y D++ +G+ DP+KV R+AL +AAS++ L  TTEA+V + 
Sbjct: 421 AEK-VRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADK 479
Query: 361 PKEEK 365
           P++EK
Sbjct: 480 PEKEK 484

>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546

Iteration: 1
 Score =  325 bits (834), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 172/365 (47%), Positives = 242/365 (66%), Gaps = 2/365 (0%)
Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVG EGVIT+ +  T   +LE+ EGM+ D+GYIS YF+T+ + Q+  LEDP IL+   
Sbjct: 164 MDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSS 223
Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+S +  ++ +LE  +   +PLLI+AEDVE EAL+TL++NK+R   K  A+KAPGFG+ R
Sbjct: 224 KVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRR 283
Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A+LTGG +I+EE+G+ LE  +L +LG  +KV ++KD+T I++GAGD  +I  R
Sbjct: 284 KAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGR 343
Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IENS SDYD+EKLQERLAKL+GGVAV+K G A+E E+ E+K R+ DA+   KA
Sbjct: 344 VAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKA 403
Query: 241 AVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXX 300
           AVEEGIV GGGV                 D+  G  I++ AL+ P+  I           
Sbjct: 404 AVEEGIVAGGGVTLLQAAPTLDELKLEG-DEATGANIVKVALEAPLKQIAFNSGLEPGVV 462
Query: 301 XXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
             K +       G +A  G Y D++ +G+ DP+KV R+AL +AAS++ L  TTEA+V + 
Sbjct: 463 AEK-VRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADK 521
Query: 361 PKEEK 365
           P++EK
Sbjct: 522 PEKEK 526

>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192

Iteration: 1
 Score =  233 bits (595), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 148/192 (77%)
Query: 23  EVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPL 82
           +VVEGM+ DRGY+SPYFI   +    ELE P IL+ +KKISN+  ++ VLE   K  +PL
Sbjct: 1   DVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPL 60
Query: 83  LIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM 142
           LI+AEDVE EALATL++N +R  +KV A+KAPGFG+ RKA +QD+A LTGG +I+EE+GM
Sbjct: 61  LIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGM 120
Query: 143 DLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQE 202
           +LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R  QIR  IE +TSDYD+EKLQE
Sbjct: 121 ELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQE 180
Query: 203 RLAKLSGGVAVL 214
           R+AKL+GGVAV+
Sbjct: 181 RVAKLAGGVAVI 192

>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193

Iteration: 1
 Score =  227 bits (578), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 142/186 (76%)
Query: 26  EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIV 85
           EGM+ DRGY+SPYFI   +  + ELE P IL+ +KKISN+  ++ VLE   K  +PLLI+
Sbjct: 8   EGMQFDRGYLSPYFINKPETGEVELESPFILLTDKKISNIRELLPVLEAVAKAGKPLLII 67
Query: 86  AEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145
           AEDVE EALATL++N +R  +KV A+KAPGFG+ RKA +QD+A LTGG +I+EELGM LE
Sbjct: 68  AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELGMKLE 127
Query: 146 KVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLA 205
           K  L+ LG  K+V I+KD T I+DG G++ +I+ R  QIR  IE +TSDYD+EKLQER+A
Sbjct: 128 KATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVA 187
Query: 206 KLSGGV 211
           KL+GGV
Sbjct: 188 KLAGGV 193

>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203

Iteration: 1
 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/186 (58%), Positives = 142/186 (76%)
Query: 26  EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIV 85
           EGM+ DRGY+SPYFI   +    ELE P IL+ +KKISN+  ++ VLE   K  +PLLI+
Sbjct: 18  EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 77
Query: 86  AEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145
           AEDVE EALATL++N +R  +KV A+KAPGFG+ RKA +QD+A LTGG +I+EE+GM+LE
Sbjct: 78  AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELE 137
Query: 146 KVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLA 205
           K  L+ LG  K+V I+KD T I+DG G++ +I+ R  QIR  IE +TSDYD+EKLQER+A
Sbjct: 138 KATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVA 197
Query: 206 KLSGGV 211
           KL+GGV
Sbjct: 198 KLAGGV 203

>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193

Iteration: 1
 Score =  226 bits (576), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 142/186 (76%)
Query: 26  EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIV 85
           EGM+ DRGY+SPYFI   +  + ELE P IL+ +KKISN+  ++ VLE   K  +PLLI+
Sbjct: 8   EGMQFDRGYLSPYFINKPETGEVELESPFILLVDKKISNIRELLPVLEAVAKAGKPLLII 67
Query: 86  AEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145
           AEDVE EALATL++N +R  +KV A+KAPGFG+ RKA +QD+A LTGG +I+EELGM LE
Sbjct: 68  AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELGMKLE 127
Query: 146 KVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLA 205
           K  L+ LG  K+V I+KD T I+DG G++ +I+ R  QIR  IE +TSDYD+EKLQER+A
Sbjct: 128 KATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVA 187
Query: 206 KLSGGV 211
           KL+GGV
Sbjct: 188 KLAGGV 193

>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201

Iteration: 1
 Score =  218 bits (556), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/186 (56%), Positives = 142/186 (76%)
Query: 26  EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIV 85
           EGM+ DRGY+SPYFI   ++   ELE+P IL+ +KKISN+  ++ VLE   K  +PL+I+
Sbjct: 13  EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVII 72
Query: 86  AEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145
           AEDVE EALATL++N +R  +KV ++KAPGFG+ RKA +QD+A LT G +I+EE+G++LE
Sbjct: 73  AEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELE 132
Query: 146 KVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLA 205
           K  L+ LG  K+V I+KD T I+DG G++ +I  R  QIR  IE STSDYD+EKLQER+A
Sbjct: 133 KATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQIEESTSDYDREKLQERVA 192
Query: 206 KLSGGV 211
           KL+GGV
Sbjct: 193 KLAGGV 198

>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194

Iteration: 1
 Score =  200 bits (509), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 99/194 (51%), Positives = 144/194 (74%)
Query: 21  ELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQR 80
           ELE  EG+  D+G++S YF+T+  NQ+  LED LIL+H+ KIS+L  ++ +LE      +
Sbjct: 1   ELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGK 60
Query: 81  PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 140
           PLLIVAEDVE EALATL++N +R  +K  A+K P FG+ RKA ++DLAV+TGG ++  + 
Sbjct: 61  PLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDA 120
Query: 141 GMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKL 200
           GM L +V L++LG+ ++V +SKDDTVI+DG G  +++  R + +R+ I+ S SD+D+EKL
Sbjct: 121 GMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKL 180
Query: 201 QERLAKLSGGVAVL 214
            ERLAKL+GGVAV+
Sbjct: 181 GERLAKLAGGVAVI 194

>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155

Iteration: 1
 Score =  181 bits (459), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/155 (55%), Positives = 116/155 (74%)
Query: 26  EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIV 85
           EGM+ DRGY+SPYFI   +    ELE P IL+ +KKISN+  ++ VLE   K  +PLLI+
Sbjct: 1   EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 60
Query: 86  AEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145
           AEDVE EALATL++N +R  +KV A+KAPGFG+ RKA +QD+A LTGG +I+EE+GM+LE
Sbjct: 61  AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELE 120
Query: 146 KVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           K  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 121 KATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 155

>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146

Iteration: 1
 Score =  174 bits (441), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 83/145 (57%), Positives = 109/145 (75%)
Query: 26  EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIV 85
           EGM+ DRGY+SPYFI   +    ELE P IL+ +KKISN+  ++ VLE   K  +PLLI+
Sbjct: 1   EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 60
Query: 86  AEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145
           AEDVE EALATL++N +R  +KV A+KAPGFG+ RKA +QD+A LTGG +I+EE+GM+LE
Sbjct: 61  AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELE 120
Query: 146 KVNLDMLGTCKKVTISKDDTVILDG 170
           K  L+ LG  K+V I+KD T I+DG
Sbjct: 121 KATLEDLGQAKRVVINKDTTTIIDG 145

>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145

Iteration: 1
 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 105/144 (72%)
Query: 27  GMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVA 86
           G + D+GYISPYF+TN +  +  LED  IL+ EKK+SN+  ++ +LE   +  +PLLI+A
Sbjct: 1   GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 87  EDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEK 146
           EDVE EALATL++NKLR  + V A+KAPGFG+ RK  ++D+A +TGG +I+EELG  LE 
Sbjct: 61  EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120
Query: 147 VNLDMLGTCKKVTISKDDTVILDG 170
             L MLG  ++V I+KD+T I+ G
Sbjct: 121 ATLSMLGRAERVRITKDETTIVGG 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	382
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	0.0
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	0.0
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	0.0
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	0.0
3osx_A	201	60 kDa chaperonin; alpha, beta, apical domain, cha	1e-109
3m6c_A	194	60 kDa chaperonin 1; chaperone, ATP-binding, nucle	1e-107
1srv_A	145	Protein (groel (HSP60 class)); chaperone, cell div	2e-71
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	7e-13
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	3e-12
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	1e-11
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	8e-11
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	9e-11
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	7e-10
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	1e-09
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	3e-09
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	5e-09
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	5e-09
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	5e-08
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	5e-07
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	5e-07
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	6e-07
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	7e-07
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	7e-07
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	9e-07
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	1e-06
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	4e-06
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	3e-05
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	2e-04

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545

 Score =  593 bits (1532), Expect = 0.0
 Identities = 230/380 (60%), Positives = 294/380 (77%), Gaps = 1/380 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M++VG EGVIT+ + K +  E+EVVEGM+ DRGY+SPYF+TN      ELED  IL+HEK
Sbjct: 166 MQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEK 225

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+S+L  +V +LE  ++ Q+PLLIVAEDVE EALATL++NKLR G+K+ A+KAPGFG+ R
Sbjct: 226 KLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRR 285

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A+LTGG +I+E+LGM LE V +DMLG  KKV+I+KD+T I+DGAG+K  IE R
Sbjct: 286 KAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEAR 345

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+A
Sbjct: 346 VSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRA 405

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AV+EGIV GGGVAL+  AK LE LS AN DQ  G+ II+ AL+ P+  IA NAGV+GAVV
Sbjct: 406 AVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVV 465

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
            GK+ E  +   G++A   EY DM K G+IDP KV+RTAL DAASV+ L+ TTEA++ E 
Sbjct: 466 AGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEK 525

Query: 361 PKEEKEAPGGMGGMGGMGGM 380
           P+ +  A  GM  MGGMGGM
Sbjct: 526 PEPKAPAG-GMPDMGGMGGM 544

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547

 Score =  589 bits (1520), Expect = 0.0
 Identities = 212/383 (55%), Positives = 278/383 (72%), Gaps = 4/383 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVGKEGVIT+ DG  L +EL+VVEGM+ DRGY+SPYFI   +    ELE P IL+ +K
Sbjct: 165 MDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           KISN+  ++ VLE   K  +PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ R
Sbjct: 225 KISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R
Sbjct: 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 344

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+A
Sbjct: 345 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRA 404

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEG+V GGGVAL+  A +L  L   N DQ +G+++   A++ P+  I  N G E +VV
Sbjct: 405 AVEEGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVV 464

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AASV+ LM TTE +V +L
Sbjct: 465 ANTVKGGD-GNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523

Query: 361 PKEEKEAP---GGMGGMGGMGGM 380
           PK +       GGMGGMGGMGGM
Sbjct: 524 PKNDAADLGAAGGMGGMGGMGGM 546

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543

 Score =  577 bits (1489), Expect = 0.0
 Identities = 198/384 (51%), Positives = 275/384 (71%), Gaps = 6/384 (1%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           MEKVGKEG+IT+ + K+L  EL+ VEG + D+GYISPYF+TN +  +  LED  IL+ EK
Sbjct: 164 MEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEK 223

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+SN+  ++ +LE   +  +PLLI+AEDVE EALATL++NKLR  + V A+KAPGFG+ R
Sbjct: 224 KVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRR 283

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           K  ++D+A +TGG +I+EELG  LE   L MLG  ++V I+KD+T I+ G G K+ IE R
Sbjct: 284 KEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEAR 343

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
              I+  +E + S+Y +EKLQERLAKL+GGVAV+++G A+E E+ EKK R  DALNAT+A
Sbjct: 344 INGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRA 403

Query: 241 AVEEGIVPGGGVALLYAAKELEKL-STANFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 299
           AVEEGIVPGGGV LL A   +E+L      D+  G +I++ AL+ P   IA NAG EG+V
Sbjct: 404 AVEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSV 463

Query: 300 VVGKLLEQD-NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 358
           +V ++L +  N   G++AA GE+VDMV++GI+DP KV R+AL +AAS+ +L+ TTEA+V 
Sbjct: 464 IVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVA 523

Query: 359 ELPKEEKEAPGGMGGMGGMGGMDY 382
           E P++++  P       G G MD+
Sbjct: 524 EKPEKKESTP----ASAGAGDMDF 543

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546

 Score =  577 bits (1489), Expect = 0.0
 Identities = 190/378 (50%), Positives = 265/378 (70%), Gaps = 2/378 (0%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK 60
           M+KVG EGVIT+ +  T   +LE+ EGM+ D+GYIS YF+T+ + Q+  LEDP IL+   
Sbjct: 164 MDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSS 223

Query: 61  KISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 120
           K+S +  ++ +LE  +   +PLLI+AEDVE EAL+TL++NK+R   K  A+KAPGFG+ R
Sbjct: 224 KVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRR 283

Query: 121 KANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEER 180
           KA +QD+A+LTGG +I+EE+G+ LE  +L +LG  +KV ++KD+T I++GAGD  +I  R
Sbjct: 284 KAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGR 343

Query: 181 CEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240
             QIR  IENS SDYD+EKLQERLAKL+GGVAV+K G A+E E+ E+K R+ DA+   KA
Sbjct: 344 VAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKA 403

Query: 241 AVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300
           AVEEGIV GGGV LL AA  L++L     D+  G  I++ AL+ P+  IA N+G+E  VV
Sbjct: 404 AVEEGIVAGGGVTLLQAAPTLDELKLEG-DEATGANIVKVALEAPLKQIAFNSGLEPGVV 462

Query: 301 VGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360
             K+        G +A  G Y D++ +G+ DP+KV R+AL +AAS++ L  TTEA+V + 
Sbjct: 463 AEKVRNLP-AGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADK 521

Query: 361 PKEEKEAPGGMGGMGGMG 378
           P++EK +  G G MGGM 
Sbjct: 522 PEKEKASVPGGGDMGGMD 539

>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201

 Score =  317 bits (815), Expect = e-109
 Identities = 105/197 (53%), Positives = 146/197 (74%)

Query: 17  TLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELAL 76
           + ++     EGM+ DRGY+SPYFI   ++   ELE+P IL+ +KKISN+  ++ VLE   
Sbjct: 4   SHHHHHHGSEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVA 63

Query: 77  KRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLI 136
           K  +PL+I+AEDVE EALATL++N +R  +KV ++KAPGFG+ RKA +QD+A LT G +I
Sbjct: 64  KASKPLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVI 123

Query: 137 TEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYD 196
           +EE+G++LEK  L+ LG  K+V I+KD T I+DG G++ +I  R  QIR  IE STSDYD
Sbjct: 124 SEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQIEESTSDYD 183

Query: 197 KEKLQERLAKLSGGVAV 213
           +EKLQER+AKL+GGV +
Sbjct: 184 REKLQERVAKLAGGVKL 200

>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194

 Score =  312 bits (803), Expect = e-107
 Identities = 99/194 (51%), Positives = 144/194 (74%)

Query: 21  ELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQR 80
           ELE  EG+  D+G++S YF+T+  NQ+  LED LIL+H+ KIS+L  ++ +LE      +
Sbjct: 1   ELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGK 60

Query: 81  PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 140
           PLLIVAEDVE EALATL++N +R  +K  A+K P FG+ RKA ++DLAV+TGG ++  + 
Sbjct: 61  PLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDA 120

Query: 141 GMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKL 200
           GM L +V L++LG+ ++V +SKDDTVI+DG G  +++  R + +R+ I+ S SD+D+EKL
Sbjct: 121 GMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKL 180

Query: 201 QERLAKLSGGVAVL 214
            ERLAKL+GGVAV+
Sbjct: 181 GERLAKLAGGVAVI 194

>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145

 Score =  219 bits (559), Expect = 2e-71
 Identities = 75/144 (52%), Positives = 105/144 (72%)

Query: 27  GMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVA 86
           G + D+GYISPYF+TN +  +  LED  IL+ EKK+SN+  ++ +LE   +  +PLLI+A
Sbjct: 1   GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60

Query: 87  EDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEK 146
           EDVE EALATL++NKLR  + V A+KAPGFG+ RK  ++D+A +TGG +I+EELG  LE 
Sbjct: 61  EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120

Query: 147 VNLDMLGTCKKVTISKDDTVILDG 170
             L MLG  ++V I+KD+T I+ G
Sbjct: 121 ATLSMLGRAERVRITKDETTIVGG 144

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 68.7 bits (169), Expect = 7e-13
 Identities = 61/278 (21%), Positives = 122/278 (43%), Gaps = 65/278 (23%)

Query: 120 RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKV---TISKDDTVILDGAGDKKS 176
           +K++M+ LA  TG  ++T     +++ +  + LG  + V    ++ ++ + ++G  + K+
Sbjct: 317 KKSDMEKLAKATGAKIVT-----NVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKA 371

Query: 177 IEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALN 236
                                             V +L I G +E  + E +  + DA+ 
Sbjct: 372 ----------------------------------VTIL-IRGGTEHVIDEVERALEDAVK 396

Query: 237 ATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGVQIIQNALKTPVHTIAANAG 294
             K  +E+G ++P GG   +  A  L++ +      + + ++   +ALK    T+A NAG
Sbjct: 397 VVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAG 456

Query: 295 VEGAVVVGKLL---EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMT 351
           ++   ++ K++   +     +G D  +G+  DM++ GII+PL+V            ++ +
Sbjct: 457 LDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRV---------KKQAIKS 507

Query: 352 TTEAI--------VVELPKEEKEAPGGMGGMGGMGGMD 381
            +EA         V+     + E   G G  GGMGGMD
Sbjct: 508 ASEAAIMILRIDDVIAAKATKPEGGQGGGMPGGMGGMD 545

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 24/178 (13%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           G +E  + E    V DA+      +E+G IV GGG   +  + +L + +   +  +++ V
Sbjct: 371 GTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAV 430

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKL----LEQDNTDLGYDAAKGEYVDMVKSGIID 331
           +   +AL+    T+A NAG++   ++ K+        N   G +   G   DM ++G+++
Sbjct: 431 RAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVE 490

Query: 332 PLKVIRTALVDAASVSSLMTTTEA---------IVVELPKEEKEAPGGMGGMGGMGGM 380
           PL+V            ++ +  E+         ++           G MGGM GMGGM
Sbjct: 491 PLRV---------KTQAIQSAAESTEMLLRIDDVIAAEKLRGAPDMGDMGGMPGMGGM 539

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 52/265 (19%), Positives = 97/265 (36%), Gaps = 56/265 (21%)

Query: 120 RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKV---TISKDDTVILDGAGDKKS 176
           ++ NM+ L ++TGG+         +E ++  +LG    V   TI ++    +    D KS
Sbjct: 321 KRRNMERLQLVTGGEAQN-----SVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDPKS 375

Query: 177 IEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALN 236
                                               +L I G++   + + KD V D L 
Sbjct: 376 ----------------------------------CTIL-IKGSTHYALAQTKDAVRDGLR 400

Query: 237 ATKAAVEEG-IVPGGGVALLYAAKELEKLSTANFD----QKIGVQIIQNALKTPVHTIAA 291
           A    +++  I+PG G   +  ++ L   +          K G++    AL     T+  
Sbjct: 401 AVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVK 460

Query: 292 NAGVEGAVVVGKL--------LEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDA 343
           N+G +   V+  +           +   +G D   G+  D    GI D  +V+R A+  A
Sbjct: 461 NSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGA 520

Query: 344 ASVSSLMTTTEAIVVELPKEEKEAP 368
             ++S +   + ++       KE P
Sbjct: 521 TGIASNLLLCDELLRAGRSTLKETP 545

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 53/270 (19%), Positives = 107/270 (39%), Gaps = 25/270 (9%)

Query: 120 RKANMQDLAVLTGG-------DLITEELGMDLEKVNLDMLGTCKKVTI-----SKDDTVI 167
           +K++   +A +TG        DL   ++G +     ++M+G      +         +  
Sbjct: 321 KKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGW 380

Query: 168 LDGAGDKKSIEERCEQI--------RSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGA 219
                +K S + R ++         R    +S+               SG    + + G 
Sbjct: 381 SHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGG 440

Query: 220 SEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGVQI 277
           S+  + E    + DA+   +  +    + PGGG   +  + +L + +      Q+   Q 
Sbjct: 441 SKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQA 500

Query: 278 IQNALKTPVHTIAANAGVEGAVVVGKLL---EQDNTDLGYDAAKGEYVDMVKSGIIDPLK 334
           + +A++    T+  NAG +   ++ +L     Q N   G D  KG+ VDMV  GI +P  
Sbjct: 501 VADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEV 560

Query: 335 VIRTALVDAASVSSLMTTTEAIVVELPKEE 364
           + + ++  A   + L+   + IV  + K+E
Sbjct: 561 IKQQSVKTAIESACLLLRVDDIVSGVRKQE 590

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 62.2 bits (152), Expect = 9e-11
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 48/229 (20%)

Query: 120 RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKV---TISKDDTVILDGAGDKKS 176
           ++ NM+ L +  GG  +       L+ +N D L     V   T+ ++    ++   + +S
Sbjct: 309 KRRNMERLTLACGGIALN-----SLDDLNPDCLLGHAGVYEYTLGEEKFTFIEKCNNPRS 363

Query: 177 IEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALN 236
                                             V +L I G ++  + + KD + D L 
Sbjct: 364 ----------------------------------VTLL-IKGPNKHTLTQIKDAIRDGLR 388

Query: 237 ATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGVQIIQNALKTPVHTIAANAG 294
           A K A+++G +VPG G   +  A+ L K   +     ++GVQ   +AL      +A N+G
Sbjct: 389 AVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSG 448

Query: 295 VEGAVVVGKLL---EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTAL 340
            +    + K+     +    +G D   GE +   ++GI D   V +  L
Sbjct: 449 FDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLL 497

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 61/281 (21%), Positives = 105/281 (37%), Gaps = 67/281 (23%)

Query: 120 RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKV---TISKDDTVILDGAGDKKS 176
           +K++M+ LA  TG  ++T     DL+ +   +LG  + V    I  D    + G  + K+
Sbjct: 314 KKSDMEKLAKATGAKIVT-----DLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKA 368

Query: 177 IEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALN 236
                                             V++L I G ++  V E +  + DA+ 
Sbjct: 369 ----------------------------------VSIL-IRGGTDHVVSEVERALNDAIR 393

Query: 237 ATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGVQIIQNALKTPVHTIAANAG 294
                 E+G  + GGG      A  L K + +    +++ ++    AL+    T+A NAG
Sbjct: 394 VVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAG 453

Query: 295 VEGAVVVGKLL---EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMT 351
           ++    + KL    E+    +G D       DM   G++DPL+V            +L +
Sbjct: 454 IDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRV---------KTHALES 504

Query: 352 TTEA---------IVVELPKEEKEAPGGMG-GMGGMGGMDY 382
             E          ++           GG G GM G G  +Y
Sbjct: 505 AVEVATMILRIDDVIASKKSTPPSGQGGQGQGMPGGGMPEY 545

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           G +E  + E +  + DA+   K A++   IV GGG   +  +K L   S T    Q++ +
Sbjct: 380 GGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMII 439

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKLL---EQDNTDLGYDAAKGEYVDMVKSGIIDP 332
                AL+     +  NAG +   ++ KL     +     G         D     + +P
Sbjct: 440 NAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAKFVWEP 499

Query: 333 LKVIRTALVDAASVSSLMTTTEAI--------VVELPKEEKEAPGGMGGMGGMGGMD 381
             V          +++L + TEA          +     E    G M   G   G  
Sbjct: 500 ALV---------KINALNSATEATNLILSVDETITNKGSESANAGMMPPQGAGRGRG 547

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score = 57.5 bits (140), Expect = 3e-09
 Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 23/177 (12%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           G +E  V      + DAL+     +E+G +V GGG + +  +  L + + T    +++ V
Sbjct: 329 GGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAV 388

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKLL---EQDNTDLGYDAAKGEYVDMVKSGIIDP 332
                AL+     +A NAG++   ++ +L    E+ N + G +   GE VDM ++ +I+P
Sbjct: 389 SKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEP 448

Query: 333 LKVIRTALVDAASVSSLMTTTEAI--------VVELPKEEKEAPGGMGGMGGMGGMD 381
           L++            ++    EA         VV       +  G  GG+  M  +D
Sbjct: 449 LRI---------KTQAINAAMEATVMILRIDDVVASKGSANQGMGP-GGLPDMPDLD 495

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 23/178 (12%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           G  E  V E +  + DAL      +++G  + GGG   +  AK+L K +      +++ V
Sbjct: 385 GGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAV 444

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKL----LEQDNTDLGYDAAKGEYVDMVKSGIID 331
           +   NAL++ V  +  NAG +   ++ KL      ++N   G D   G+ VDM + G+I+
Sbjct: 445 EAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIE 504

Query: 332 PLKVIRTALVDAASVSSLMTTTEAI--------VVELPKEEKEAPGGMGGMGGMGGMD 381
           P  V          ++++   TEA         VV   K+        GG       D
Sbjct: 505 PALV---------KMNAIKAATEAATLVLRIDDVVSAGKKSGGESKTPGGANKPSEED 553

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 56/278 (20%), Positives = 110/278 (39%), Gaps = 65/278 (23%)

Query: 120 RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKV---TISKDDTVILDGAGDKKS 176
           +K++M  LA  TG  +++      +++++   LGT ++V    + +D    + G  + K+
Sbjct: 315 KKSDMDKLAKATGASIVS-----TIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKA 369

Query: 177 IEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALN 236
                                             V++L + G +E  V E +  +TD+L+
Sbjct: 370 ----------------------------------VSIL-VRGETEHVVDEMERSITDSLH 394

Query: 237 ATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGVQIIQNALKTPVHTIAANAG 294
              +A+E+G    GGG      A  L   +      Q++ ++   +A++     +A NAG
Sbjct: 395 VVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAG 454

Query: 295 VEGAVVVGKLL---EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMT 351
           ++   ++ KL     + N   G +   GE  DMVK+G+I+P++V            ++ +
Sbjct: 455 LDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRV---------GKQAIES 505

Query: 352 TTEAI--------VVELPKEEKEAPGGMGGMGGMGGMD 381
            TEA         V+        +     G       D
Sbjct: 506 ATEAAIMILRIDDVIATKSSSSSSNPPKSGSSSESSED 543

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           GAS+  + E +  + DA+   +  + +  +VPGGG + +  A  L + S      ++   
Sbjct: 366 GASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPY 425

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKL----LEQDNTDLGYDAAKGEYVDMVKSGIID 331
           + +  AL+    T+  N G     ++  L     +++    G +   G  VDM + GI +
Sbjct: 426 RAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWE 485

Query: 332 PLKVIRTALVDAA 344
           PL V       A 
Sbjct: 486 PLAVKLQTYKTAV 498

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 39/230 (16%)

Query: 120 RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEE 179
            +  ++ L+   G   I      D+E    D L +   V              +  S   
Sbjct: 317 EREEIEFLSKGLGCKPIA-----DIELFTEDRLDSADLVE-------------EIDSDGS 358

Query: 180 RCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239
           +  ++ + I N                    V+V+ I GA+   + E +  + DAL   +
Sbjct: 359 KIVRV-TGIRN--------------NNARPTVSVV-IRGANNMIIDETERSLHDALCVIR 402

Query: 240 AAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGVQIIQNALKTPVHTIAANAGVEG 297
             V+E  ++ GGG   +  ++ L K + +    Q    Q   +AL+    T+A NAG+  
Sbjct: 403 CLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNS 462

Query: 298 AVVVGKL---LEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAA 344
             VV +L    E    + G    +    +  +  I+ P+ V  +A+  A+
Sbjct: 463 IKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLAS 512

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           G+++  V E +  + D+L   +  V++  +V GGG A +  +  + + +       +   
Sbjct: 410 GSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAF 469

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKL----LEQDNTDLGYDAAKGEYVDMVKSGIID 331
           +    AL T   T+A N+G++    +  L    L++  +++G D       DM +  ++D
Sbjct: 470 RGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVD 529

Query: 332 PLKVIRTALVDAA 344
           P    +  ++ A 
Sbjct: 530 PFIGKKQQILLAT 542

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score = 50.2 bits (121), Expect = 6e-07
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 33/170 (19%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTANFDQKIG-- 274
           GA++  + E +  + DAL+      +E   V GGG A +  +K ++  +       I   
Sbjct: 371 GATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQ-----NIDGK 425

Query: 275 ----VQIIQNALKTPVHTIAANAGVEGAVVVGKL---LEQDNTDLGYDAAKGEYVDMVKS 327
               V+    AL+     +A NAG + + +V KL   +    +  G D   G   DM + 
Sbjct: 426 KSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQL 485

Query: 328 GIIDPLKVIRTALVDAASVSSLMTTTEA---------IVVELPKEEKEAP 368
           GI++  K+           + + + +EA         I+   P+      
Sbjct: 486 GIVESYKL---------KRAVVSSASEAAEVLLRVDNIIRARPRTANRQH 526

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 49/238 (20%), Positives = 91/238 (38%), Gaps = 58/238 (24%)

Query: 120 RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKV---TISKDDTVILDGAGDKKS 176
               ++ LA++TGG++ +       +   L  LG+CK +    I +D  +   G    ++
Sbjct: 303 DFVGVERLALVTGGEIAS-----TFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEA 357

Query: 177 IEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALN 236
                                               ++ + GA++  + E +  + DAL 
Sbjct: 358 ----------------------------------CTIV-LRGATQQILDEAERSLHDALC 382

Query: 237 ATKAAVEEG-IVPGGGVALLYAAKELEKLSTANFDQKIG------VQIIQNALKTPVHTI 289
                V++   V GGG + +  A  + +L++     +        ++    AL+     I
Sbjct: 383 VLAQTVKDSRTVYGGGCSEMLMAHAVTQLAS-----RTPGKEAVAMESYAKALRMLPTII 437

Query: 290 AANAGVEGAVVVGKLL---EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAA 344
           A NAG + A +V +L     +  T  G D  +G   DM   GI +  +V R  L+ AA
Sbjct: 438 ADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAA 495

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           G +E  + E +  + DA+   + A++   +V GGG   +  +K L   S T    Q++ +
Sbjct: 367 GGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLI 426

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKLL---EQDNTDLGYDAAKGEYVDMVKSGIIDP 332
                AL+     +  NAG +   ++ KL     Q     G D    +  D  ++ + +P
Sbjct: 427 GAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEP 486

Query: 333 LKVIRTALVDAA 344
             V   AL  A+
Sbjct: 487 AMVRINALTAAS 498

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score = 49.4 bits (119), Expect = 9e-07
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           G+++  + E +  + DAL   +  V++  ++ GGG   +  A  L + S T +  +   +
Sbjct: 371 GSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCI 430

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKLL---EQDNTDLGYDAAKGEYVDMVKSGIIDP 332
           +   +A++    T+A NAG+     V +L     Q     G +  KG   ++++  ++ P
Sbjct: 431 RAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEELVVQP 490

Query: 333 LKVIRTALVDAA 344
           L V  +AL  A 
Sbjct: 491 LLVSVSALTLAT 502

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           G ++  + E K  + DAL   +  + +  +V GGG A +  A  + + +      ++  +
Sbjct: 367 GGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAM 426

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKL----LEQDNTDLGYDAAKGEYVDMVKSGIID 331
           +   +AL+     +A N+G+     + ++    +++ N  LG D       DM    +I+
Sbjct: 427 RAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIE 486

Query: 332 PLKVIRTALVDAA 344
            L   +  +  A 
Sbjct: 487 TLIGKKQQISLAT 499

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 35/179 (19%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           GA++  + E +  + D+L+  K  +E G +VPGGG         L+  + T    +++ +
Sbjct: 389 GANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAI 448

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKL---------------LEQDNTDLGYDAAKGE 320
                AL     T+A NA  + + +V KL                 +   + G D  +G+
Sbjct: 449 AEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGK 508

Query: 321 YVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEA---------IVVELPKEEKEAPGG 370
            VD + +G+++P             V SL +  EA         ++   P+  KE P  
Sbjct: 509 IVDEIHAGVLEPTIS---------KVKSLKSALEACVAILRIDTMITVDPEPPKEDPHD 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 52/376 (13%), Positives = 106/376 (28%), Gaps = 120/376 (31%)

Query: 1   MEKVGKEGVITIH----DGKT-----LYNELEVVEGMK-----LDRGYI-SPYFITNQKN 45
           + ++     + I      GKT     +    +V   M      L+     SP  +     
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 46  QKCELEDPLILVHEKKISNLTAVVRVLELALKR---QRPL---LIVAEDVESEALATLIL 99
           +     DP         SN+   +  ++  L+R    +P    L+V  +V++        
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK----AW 259

Query: 100 NKLRAGIKVCAIKAPGFGENRKANMQD-LAVLTGGDLITEELGMDLEKVN-LDMLGTCKK 157
           N      K+           R   + D L+  T   +  +   M L       +L   K 
Sbjct: 260 NAFNLSCKILLT-------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KY 310

Query: 158 VTISKDD-------------TVILDGAG--DKKSIEER-----CEQIRSAIENSTSDYDK 197
           +     D             ++I       D  +  +      C+++ + IE+S +  + 
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 198 EKLQERLAKLS---GGV----AVLKI--GGASEAEVGEKKDRVTDALNATKAAVEEGIVP 248
            + ++   +LS           +L +      +++V                     +V 
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-------------------MVVV- 408

Query: 249 GGGVALLYAAKELEKLSTANFDQK---IGVQIIQNALKTP------VHTIAANAGVEGAV 299
                      +L K S      K   I +  I   LK        +H            
Sbjct: 409 ----------NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR----------- 447

Query: 300 VVGKLLEQDNTDLGYD 315
               +++  N    +D
Sbjct: 448 ---SIVDHYNIPKTFD 460

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 22/151 (14%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           GA++    E +  + DAL   K  +E   +VPGGG      +  LE  + +    +++ +
Sbjct: 373 GANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAI 432

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKL-----------LEQDNTDLGYDAAKGEYVDM 324
                +L    +T+A NA  +   +V KL             ++   +G D   G+  D 
Sbjct: 433 AEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDN 492

Query: 325 VKSGIIDPLKVIRTALVDAASVSSLMTTTEA 355
            ++G+ +P  V          V SL   TEA
Sbjct: 493 KQAGVFEPTIV---------KVKSLKFATEA 514

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 20/142 (14%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTANFDQKIGVQ 276
           G+++  + + +  V D +N  K    +  +VPGGG   +  AK++        +   G++
Sbjct: 363 GSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYG----ETCPGLE 418

Query: 277 --IIQ---NALKTPVHTIAANAGVEGAVVVGKL-----LEQDNTDLGYDAAKGEYVDMVK 326
              I+    A +     +A N+GV+   V+ KL         N  L  +A      DM++
Sbjct: 419 QYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLE 478

Query: 327 SGIIDPLKV----IRTALVDAA 344
           +G++D        I+ A  +AA
Sbjct: 479 AGVLDTYLGKYWAIKLA-TNAA 499

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 43/190 (22%)

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEEG---IVPGGGVALLYAAKELEKLSTANFDQKIG 274
           GA++  + + +  + D + A K  ++     ++PG G   +     + K      ++  G
Sbjct: 388 GATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYG----ERTPG 443

Query: 275 VQ--IIQ---NALKTPVHTIAANAGVEGAVVVGKL-----------LEQDNTDLGYD--- 315
           +    I+    A +    T+A  AG++   V+  L           ++ D+   G D   
Sbjct: 444 LLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDG 503

Query: 316 AAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAI--------VVELPKEEKEA 367
            +     D+ +  I D L              ++   TEA         ++   K     
Sbjct: 504 ESDEGVKDIREENIYDMLAT---------KKFAINVATEAATTVLSIDQIIMAKKAGGPR 554

Query: 368 PGGMGGMGGM 377
                  G  
Sbjct: 555 APQGPRPGNW 564

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	382
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	100.0
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	100.0
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	100.0
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	100.0
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	100.0
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	100.0
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	100.0
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	100.0
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	100.0
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	100.0
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	100.0
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	100.0
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	100.0
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	100.0
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	100.0
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	100.0
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	100.0
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	100.0
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	100.0
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	100.0
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	100.0
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	100.0
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	100.0
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	100.0
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	100.0
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	100.0
3m6c_A	194	60 kDa chaperonin 1; chaperone, ATP-binding, nucle	100.0
3osx_A	201	60 kDa chaperonin; alpha, beta, apical domain, cha	100.0
1srv_A	145	Protein (groel (HSP60 class)); chaperone, cell div	100.0
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	99.92
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	99.85

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=100.00  E-value=1.6e-87  Score=693.14  Aligned_cols=379  Identities=61%  Similarity=0.944  Sum_probs=310.1

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      ++||++|+|.+++|++++|++++++|++|+++|.||||++++++|+++++||+||++|++|+++++++++++++.++|+|
T Consensus       167 ~~V~~~g~I~Ve~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~~~~~l~~~le~i~~~g~~  246 (545)
T 1iok_A          167 QRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKP  246 (545)
T ss_dssp             HHHCTTSCCCCEECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC-----------CCC
T ss_pred             HHhccCCeEEEEeCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcCCHHHHHHHHHHHHhcCCC
Confidence            56899999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|+++|+++|+.|++++.++|+|||+|+|+++++++|+|||++|||++++++.+++++++++++||+|++|+++
T Consensus       247 lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~~  326 (545)
T 1iok_A          247 LLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSIN  326 (545)
T ss_dssp             CEEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEEC
T ss_pred             EEEECCCcCHHHHHHHHHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      +++|+||++|+++++++.|+++++.+++.+.|+|+|++|+||+++|+|++|||+|||+|+.+++|++|+++|||+++|++
T Consensus       327 ~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a  406 (545)
T 1iok_A          327 KDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAA  406 (545)
T ss_dssp             SSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY  321 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i  321 (382)
                      +++|+|||||++|++++..|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.|++++|||+.+|++
T Consensus       407 v~~giVpGGGa~e~~~s~~L~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~~~~~G~d~~~g~~  486 (545)
T 1iok_A          407 VQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEY  486 (545)
T ss_dssp             HHHCEEETTTHHHHHHGGGGGSCCCSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCCSTTEEEETTTTEE
T ss_pred             hhcCCCCCchHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCCCCcc
Confidence            99999999999999999999988655789999999999999999999999999999999999998888899999999999


Q ss_pred             ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCCCC
Q 016809          322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMD  381 (382)
Q Consensus       322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~  381 (382)
                      .||++.|||||+.||+++|++|+|+|++|||||++|...|++++++ |+||||||||||+
T Consensus       487 ~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~~~-~~~~~~~~~~~~~  545 (545)
T 1iok_A          487 GDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEPKAPA-GGMPDMGGMGGMM  545 (545)
T ss_dssp             EEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC--------------------
T ss_pred             cchHhcCcEEccHHHHHHHHHHHHHHHHHHhHHHhhccCCccCCCC-CCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999988766443 6789999999983

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=100.00  E-value=3e-86  Score=683.36  Aligned_cols=378  Identities=55%  Similarity=0.883  Sum_probs=351.2

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      ++||++|+|.+++|++++|++++++|++|+++|.||||++++++|+++++||+||++|++|+++++++++++++.++|+|
T Consensus       166 ~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i~~~g~~  245 (547)
T 1kp8_A          166 DKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKP  245 (547)
T ss_dssp             HHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHHHHGGGCC
T ss_pred             HHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHHHHhcCCC
Confidence            57899999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|+++|+++|+.|++++.++|+|||+|+|+++++++|+|||++|||++++++.+++++++++++||+|++|+++
T Consensus       246 lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~~  325 (547)
T 1kp8_A          246 LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVIN  325 (547)
T ss_dssp             EEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEEC
T ss_pred             EEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      +++|+||++|+++++++.|+++++.+++.+.|+|+|++|+||+++|+|++|||+|||+|+.+++|++|+++|||+++|++
T Consensus       326 ~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~a  405 (547)
T 1kp8_A          326 KDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAA  405 (547)
T ss_dssp             SSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY  321 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i  321 (382)
                      +++|+|||||++|++++..|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++. +.++|||+.+|++
T Consensus       406 v~~giVpGGGa~e~~~s~~L~~~~~~~g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~-~~~~G~d~~~g~~  484 (547)
T 1kp8_A          406 VEEGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG-DGNYGYNAATEEY  484 (547)
T ss_dssp             HHHCEEETTTHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS-CTTEEEETTTTEE
T ss_pred             ccCCEEeCCcHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc-CCCEeEeCCCCcc
Confidence            999999999999999999999886557899999999999999999999999999999999999976 5789999999999


Q ss_pred             ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCC-CC--CCCCCCCCCCC
Q 016809          322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEA-PG--GMGGMGGMGGM  380 (382)
Q Consensus       322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~-~~--~~~~~~~~~~~  380 (382)
                      .||++.|||||+.||+++|++|+|+|++|||||++|..+|++++++ |+  +||||||||||
T Consensus       485 ~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (547)
T 1kp8_A          485 GNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAAGGMGGMGGMGGM  546 (547)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC---------------------
T ss_pred             ccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCccCCCCCCCCCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999988776432 22  45566777776

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=100.00  E-value=1.9e-85  Score=676.08  Aligned_cols=376  Identities=51%  Similarity=0.822  Sum_probs=341.4

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      ++||++|+|.++.+.+..+++++++|++|+++|.||||++++++|+++++||+||++|++|+++++++++++++.++|+|
T Consensus       165 ~~V~~dgvI~Ve~~~~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs~~~~l~~~le~I~~~g~~  244 (546)
T 3rtk_A          165 DKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKP  244 (546)
T ss_dssp             HHSCTTSEEEEECCSSSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEECCSTTTHHHHHHHHTTTCC
T ss_pred             HHhccCCceEEEecCCcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCccCCHHHHHHHHHHHHhcCCC
Confidence            57899999999998887777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|+++|+++|+.|+++|+++|++||+|+|++.++++|+|||++|||++++++.+++++++++++||+|++|+++
T Consensus       245 lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~i~  324 (546)
T 3rtk_A          245 LLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVT  324 (546)
T ss_dssp             EEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEEEC
T ss_pred             EEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999888888999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      +++++||++|+++++++.|+++|+.+++.+.|+|++++|++|+++|+|++|||+|||+|+.+++|++|+++||||++|++
T Consensus       325 ~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~a  404 (546)
T 3rtk_A          325 KDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAA  404 (546)
T ss_dssp             SSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY  321 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i  321 (382)
                      +++|+|||||++|++++..|++++ .++++|+++++|++||+.||++||+|||+|+.+++++|++. ...+|||+.+|++
T Consensus       405 v~~giVpGGGa~e~~~s~~L~~~~-~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~-~~~~G~d~~~g~~  482 (546)
T 3rtk_A          405 VEEGIVAGGGVTLLQAAPTLDELK-LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNL-PAGHGLNAQTGVY  482 (546)
T ss_dssp             HHHCEEETTTHHHHTTGGGSTTSC-CCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS-CTTEECCSSSCCC
T ss_pred             HhCCcccCCcHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh-cCCEeEcCCCCcE
Confidence            999999999999999999999887 67899999999999999999999999999999999999986 4569999999999


Q ss_pred             ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCCCCC
Q 016809          322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY  382 (382)
Q Consensus       322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~  382 (382)
                      .||++.|||||+.||.++|++|+|+|++|||||++|..+|+++|++   |+|+|+||||||
T Consensus       483 ~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~---~~~~~~~~~~~~  540 (546)
T 3rtk_A          483 EDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEKAS---VPGGGDMGGMDF  540 (546)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC----------------------------
T ss_pred             eeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC---CCCCCCcCcccc
Confidence            9999999999999999999999999999999999999998887654   335566778886

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=100.00  E-value=3.3e-84  Score=668.73  Aligned_cols=377  Identities=52%  Similarity=0.864  Sum_probs=353.6

Q ss_pred             cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016809            2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP   81 (382)
Q Consensus         2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~   81 (382)
                      .+||++|+|.+++|++++|++++++|++|+++|.+|||++++++|+++++||+||++|++|+++++++++++++.++|+|
T Consensus       165 ~~V~~~g~I~Ve~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~Is~~~~l~~~le~i~~~g~~  244 (543)
T 1we3_A          165 EKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKP  244 (543)
T ss_dssp             HTTCTTSEEEEEECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCBCCHHHHHHHHHHHHTTTCC
T ss_pred             HHhCcCCcEEEecCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCcCCHHHHHHHHHHHHhcCCC
Confidence            57899999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      |||++++|+++|+++|+.|++++.++|+|||+|+|+++++++|+|||++|||++++++.+++++++++++||+|+.|+++
T Consensus       245 lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~~  324 (543)
T 1we3_A          245 LLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRIT  324 (543)
T ss_dssp             EEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEEC
T ss_pred             EEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016809          162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA  241 (382)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a  241 (382)
                      +++++||++|+++++++.|+++++.+++.+.|+|++++|++|+++|+|++|||+|||+|+.+++|++|+++|||+++|++
T Consensus       325 ~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~a  404 (543)
T 1we3_A          325 KDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAA  404 (543)
T ss_dssp             SSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC-CCceeEeCCCC
Q 016809          242 VEEGIVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD-NTDLGYDAAKG  319 (382)
Q Consensus       242 ~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~-~~~~Gid~~~~  319 (382)
                      +++|+|||||++|++++..|++++.+ ++++|+++++|++||+.||++||+|||+|+.+++++|++.| +.++|||+.+|
T Consensus       405 v~~giVpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~G~d~~~g  484 (543)
T 1we3_A          405 VEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATG  484 (543)
T ss_dssp             HHHCEEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCSCTTEEEETTTT
T ss_pred             hccCcCCCccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcCCCCEEEeCCCC
Confidence            99999999999999999999999876 78999999999999999999999999999999999999976 56899999999


Q ss_pred             ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCCCCC
Q 016809          320 EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY  382 (382)
Q Consensus       320 ~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~  382 (382)
                      ++.||++.|||||+.||+++|++|+|+|++|||||++|..+|++.|++|.   +| ||+||||
T Consensus       485 ~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~---~~-~~~~~~~  543 (543)
T 1we3_A          485 EFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPA---SA-GAGDMDF  543 (543)
T ss_dssp             EEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECSCC-------------------
T ss_pred             eecccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCC---CC-CCCCCCC
Confidence            99999999999999999999999999999999999999998887665433   22 3778876

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=100.00  E-value=7.2e-71  Score=565.51  Aligned_cols=312  Identities=21%  Similarity=0.364  Sum_probs=262.4

Q ss_pred             EEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHH------
Q 016809           10 ITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAV------   68 (382)
Q Consensus        10 i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l------   68 (382)
                      |.++  +|++++|+ ++++|++|+++|.||+       |+++++||+||+++++             |++++++      
T Consensus       151 I~V~k~~G~~~~ds-~lv~G~v~dk~~~~~~-------m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~  222 (500)
T 3aq1_B          151 IKIEKRAGGSIDDS-ELIDGLVIDKERSHPN-------MPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQ  222 (500)
T ss_dssp             EEEEEEESSCGGGC-EEESEEEESCCCSSTT-------SCSEEEEEEEEEESSCBCC-----------------------
T ss_pred             EEEEEecCCCccce-EEEeeeEEeecCCCCC-------CcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHH
Confidence            4554  99999865 9999999999999997       5778999999999999             6677775      


Q ss_pred             -----HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc
Q 016809           69 -----VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD  143 (382)
Q Consensus        69 -----~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~  143 (382)
                           .+++++|.++|+||||++++|++.|+++|.+|+      |+||+     ++++++|+|||++|||+++++     
T Consensus       223 E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~-----~~~k~~le~ia~~tGa~iis~-----  286 (500)
T 3aq1_B          223 EEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAG------IYAVR-----RVKKSDLKRLSKVTGATIIQD-----  286 (500)
T ss_dssp             --CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHCCCCBSC-----
T ss_pred             HHHHHHHHHHHHHHhCcCEEEECCCcCHHHHHHHHHCC------EEEEE-----eCCHHHHHHHHHHhCCeEecc-----
Confidence                 789999999999999999999999999999998      68887     667999999999999999998     


Q ss_pred             cccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016809          144 LEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS  220 (382)
Q Consensus       144 l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t  220 (382)
                      ++++++++||+|++|++.   +++|+||++|++                                   +++|||+|||+|
T Consensus       287 l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-----------------------------------~~~~TI~lrG~t  331 (500)
T 3aq1_B          287 LDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQN-----------------------------------SKAVTVLLHGGT  331 (500)
T ss_dssp             TTCCCSTTCEEEEEEEEEECSSSEEEEEEEETT-----------------------------------CCCEEEEEEESS
T ss_pred             cccCCHhHCCCceEEEEEEecCeEEEEEECCCC-----------------------------------CceEEEEecCCc
Confidence            999999999999999986   789999999875                                   368999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      +.+++|++|+++|||+++|+++++| +|||||++|++++..|++++.+ ++++|+++++|++||+.||++||+|||+|+.
T Consensus       332 ~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~  411 (500)
T 3aq1_B          332 EHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPI  411 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            9999999999999999999999999 9999999999999999999876 7899999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCC
Q 016809          299 VVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMG  375 (382)
Q Consensus       299 ~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~  375 (382)
                      +++++|++.|   +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|...|+++|++ | |||||
T Consensus       412 ~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~~~~-~-~g~~~  489 (500)
T 3aq1_B          412 DIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQGM-G-PGGLP  489 (500)
T ss_dssp             HHHHHHHHHHHTTCTTEEECTTTCCEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC----------------------
T ss_pred             HHHHHHHHHhcCCCCCeeEeCCCCCccchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCC-C-CCCCC
Confidence            9999999876   25899999999999999999999999999999999999999999999999988877664 3 89999


Q ss_pred             CCCCCCC
Q 016809          376 GMGGMDY  382 (382)
Q Consensus       376 ~~~~~~~  382 (382)
                      ||+||||
T Consensus       490 ~~~~~~~  496 (500)
T 3aq1_B          490 DMPDLDM  496 (500)
T ss_dssp             -------
T ss_pred             CCCCCCc
Confidence            9999997

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=100.00  E-value=1e-69  Score=561.65  Aligned_cols=321  Identities=22%  Similarity=0.369  Sum_probs=276.7

Q ss_pred             cccCCC-ce-----EEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC------------
Q 016809            2 EKVGKE-GV-----ITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK------------   61 (382)
Q Consensus         2 ~~~G~~-g~-----i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~------------   61 (382)
                      .+||++ |.     |.++  +|+++.|+ ++++|++|+++|.||+       |+++++||+|+++|++            
T Consensus       179 ~~V~~~~g~~dl~~I~V~k~~Gg~~~ds-~lv~G~v~dk~~~~~~-------m~~~~~n~kIll~~~~Le~~k~e~~~~v  250 (543)
T 3ruv_A          179 SAVVDDEGKVDKDLIKIEKKSGASIDDT-ELIKGVLVDKERVSAQ-------MPKKVTDAKIALLNCAIEIKETETDAEI  250 (543)
T ss_dssp             HHHCCTTSCCCGGGEEEEEEECSCGGGC-EEESSEEESCCCSCTT-------SCSEEEEEEEEEESSCBSCCCCSSCCCE
T ss_pred             HHhhccCCCcccceEEEEEcCCCCcccc-eeecceEEeccccCcc-------ccccccCcEEEEEcccccccccccCcee
Confidence            356776 76     6554  88888775 9999999999999998       5788999999999995            


Q ss_pred             -CCCHHH-----------HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHH
Q 016809           62 -ISNLTA-----------VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAV  129 (382)
Q Consensus        62 -I~~~~~-----------l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~  129 (382)
                       |+++++           +.+++++|.+.|+||||++++|++.++++|.+++      |++|+     ++++++|+|||+
T Consensus       251 ~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~g------I~~v~-----~v~k~~le~ia~  319 (543)
T 3ruv_A          251 RITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEG------IVAAR-----RVKKSDMEKLAK  319 (543)
T ss_dssp             EECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcC------cEEEe-----eCCHHHHHHHHH
Confidence             566666           5677899999999999999999999999999877      67887     557999999999


Q ss_pred             HHCCeEeccCCCCccccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhh
Q 016809          130 LTGGDLITEELGMDLEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAK  206 (382)
Q Consensus       130 ~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~  206 (382)
                      +|||+++++     ++++++++||+|++|++.   +++|+||.+|+++                                
T Consensus       320 ~tGa~iis~-----l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~--------------------------------  362 (543)
T 3ruv_A          320 ATGANVIAA-----IAALSAQDLGDAGLVEERKISGDSMIFVEECKHP--------------------------------  362 (543)
T ss_dssp             HHCCCEESC-----GGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSC--------------------------------
T ss_pred             HhCCceecc-----cccCCHHHCCcccEEEEEEeCCceEEEEECCCCC--------------------------------
Confidence            999999999     999999999999999986   7899999999864                                


Q ss_pred             hcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhh
Q 016809          207 LSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKT  284 (382)
Q Consensus       207 l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~  284 (382)
                         ..+||+|||+|+.+++|++|+++||||++|+++++| +|||||++|++|+..|++++.+ ++++|+++++|++||+.
T Consensus       363 ---~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~  439 (543)
T 3ruv_A          363 ---KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEV  439 (543)
T ss_dssp             ---SSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTH
T ss_pred             ---ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence               478999999999999999999999999999999999 9999999999999999999876 88999999999999999


Q ss_pred             hHHHHHHHcCCCHHHHHHHHHhcCC----CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccC
Q 016809          285 PVHTIAANAGVEGAVVVGKLLEQDN----TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL  360 (382)
Q Consensus       285 ip~~L~~NaG~d~~~vi~~l~~~~~----~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~  360 (382)
                      ||++||+|||+|+.+++.+|++.|.    .++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|..+
T Consensus       440 ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~  519 (543)
T 3ruv_A          440 IPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAE  519 (543)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTCSEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCCccccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHhheecC
Confidence            9999999999999999999998763    689999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCC---CCCCCCCCCCCCC
Q 016809          361 PKEEKEAP---GGMGGMGGMGGMD  381 (382)
Q Consensus       361 ~~~~~~~~---~~~~~~~~~~~~~  381 (382)
                      |++.|+++   |+|||||||+|||
T Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~  543 (543)
T 3ruv_A          520 KLRGAPDMGDMGGMPGMGGMPGMM  543 (543)
T ss_dssp             ------------------------
T ss_pred             ccCCCCCCCCCCCCCCCCCCCCCC
Confidence            88765542   3455566666554

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=100.00  E-value=6.9e-68  Score=548.58  Aligned_cols=314  Identities=22%  Similarity=0.416  Sum_probs=277.3

Q ss_pred             eEEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHH-----
Q 016809            9 VITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAV-----   68 (382)
Q Consensus         9 ~i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l-----   68 (382)
                      +|.++  +|++++|+ ++++|++|+++|.||+|       +++++||+||++|++             |++++++     
T Consensus       199 ~I~V~k~~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~  270 (548)
T 1q3q_A          199 NIKFEKKAGEGVEES-ELVRGVVIDKEVVHPRM-------PKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLE  270 (548)
T ss_dssp             GEEEEEEEBSCGGGC-EEESSEEESCCCSSTTS-------CSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHH
T ss_pred             eEEEEEecCCCccce-EEEeeEEEeccCCCCCC-------cceecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHH
Confidence            78777  99999986 99999999999999984       677999999999999             7788886     


Q ss_pred             ------HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCC
Q 016809           69 ------VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM  142 (382)
Q Consensus        69 ------~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~  142 (382)
                            .+++++|.++|+||||++++|++.|+++|..|+      |+||+     ++++++|+|||++|||+++++    
T Consensus       271 ~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~-----~~~k~~le~ia~~tGa~ii~~----  335 (548)
T 1q3q_A          271 QEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYG------IMAVR-----RVKKSDMEKLAKATGAKIVTN----  335 (548)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHCCCCBSS----
T ss_pred             HHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCC------cEEEc-----cCCHHHHHHHHHHhCCeEecc----
Confidence                  788999999999999999999999999999998      68887     667999999999999999998    


Q ss_pred             ccccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCC
Q 016809          143 DLEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGA  219 (382)
Q Consensus       143 ~l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~  219 (382)
                       ++++++++||+|+.|++.   +++|+||++|++                                   +.+|||+|||+
T Consensus       336 -l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-----------------------------------~~~~TI~lrG~  379 (548)
T 1q3q_A          336 -VKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN-----------------------------------PKAVTILIRGG  379 (548)
T ss_dssp             -GGGCCGGGCEEESEEEEEEETTEEEEEEECCSS-----------------------------------CSSEEEEEEES
T ss_pred             -cccCCHHHCCCceEEEEEEecCceEEEEecCCC-----------------------------------CCeEEEEECCC
Confidence             999999999999999986   789999999875                                   36899999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCH
Q 016809          220 SEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEG  297 (382)
Q Consensus       220 t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~  297 (382)
                      |+.+++|++|+++|||+++|+++++| +|||||++|++++..|++++.+ ++++|+++++|++||+.||++||+|||+|+
T Consensus       380 te~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~  459 (548)
T 1q3q_A          380 TEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDT  459 (548)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            99999999999999999999999999 9999999999999999999876 789999999999999999999999999999


Q ss_pred             HHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCC
Q 016809          298 AVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGM  374 (382)
Q Consensus       298 ~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~  374 (382)
                      .+++++|++.|   +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|...|++++.+++ +++|
T Consensus       460 ~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~~~~~~-~~~~  538 (548)
T 1q3q_A          460 VEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPEGGQG-GGMP  538 (548)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECCC-------------
T ss_pred             HHHHHHHHHHhhcCCCCcceeCCCCCccchhhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCC-CCCC
Confidence            99999999876   3689999999999999999999999999999999999999999999999998876443212 1345


Q ss_pred             CCCCCCCC
Q 016809          375 GGMGGMDY  382 (382)
Q Consensus       375 ~~~~~~~~  382 (382)
                      |||||||+
T Consensus       539 ~~~~g~~~  546 (548)
T 1q3q_A          539 GGMGGMDM  546 (548)
T ss_dssp             --------
T ss_pred             CCCCCCCC
Confidence            66667764

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=100.00  E-value=9.4e-68  Score=547.24  Aligned_cols=315  Identities=22%  Similarity=0.377  Sum_probs=273.8

Q ss_pred             ceEEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHH----
Q 016809            8 GVITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAV----   68 (382)
Q Consensus         8 g~i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l----   68 (382)
                      ++|.++  +|++++|+ ++++|++|+++|.||+|       ++.++||+||++|++             |++++++    
T Consensus       195 ~~I~V~k~~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~  266 (545)
T 1a6d_A          195 ANIKVDKKNGGSVNDT-QFISGIVIDKEKVHSKM-------PDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFL  266 (545)
T ss_dssp             GGEEEEECCCSCSTTC-EEESEEEESCCCSCTTS-------CSEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHH
T ss_pred             ceEEEEEecCCCceee-EEEeeEEEeccCCCCCC-------cceecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHH
Confidence            488887  99999986 99999999999999984       677999999999999             6777775    


Q ss_pred             -------HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCC
Q 016809           69 -------VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELG  141 (382)
Q Consensus        69 -------~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~  141 (382)
                             .+++++|.++|+||||++++|++.|+++|..|+      |+||+     ++++++|+|||++|||+++++   
T Consensus       267 ~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~-----~~~k~~le~ia~~tGa~iis~---  332 (545)
T 1a6d_A          267 NQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG------IYAVR-----RVKKSDMEKLAKATGAKIVTD---  332 (545)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHT------CEEEC-----SCCHHHHHHHHHHHCCCEESS---
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCC------eeEec-----cCCHHHHHHHHHHhCCeeecc---
Confidence                   788999999999999999999999999999998      68887     667999999999999999999   


Q ss_pred             CccccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecC
Q 016809          142 MDLEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGG  218 (382)
Q Consensus       142 ~~l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG  218 (382)
                        ++++++++||+|+.|++.   +++|+||++|++                                   +++|||+|||
T Consensus       333 --l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-----------------------------------~~~~TI~lrG  375 (545)
T 1a6d_A          333 --LDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN-----------------------------------PKAVSILIRG  375 (545)
T ss_dssp             --GGGCCGGGCEEEEEEEEEEETTEEEEEEEEESC-----------------------------------SSCEEEEECC
T ss_pred             --cccCCHHHCCCceEEEEEEecCceEEEEecCCC-----------------------------------CceEEEEEcC
Confidence              999999999999999986   689999999875                                   3689999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCC
Q 016809          219 ASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVE  296 (382)
Q Consensus       219 ~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d  296 (382)
                      +|+.+++|++|+++|||+++|+++++| +|||||++|++|+..|++++.+ ++++|+++++|++||+.||++||+|||+|
T Consensus       376 ~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d  455 (545)
T 1a6d_A          376 GTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGID  455 (545)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999 9999999999999999999876 78999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCC-CCCCC
Q 016809          297 GAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEA-PGGMG  372 (382)
Q Consensus       297 ~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~-~~~~~  372 (382)
                      +.+++++|++.|   +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|...|++++.+ +|+.|
T Consensus       456 ~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~  535 (545)
T 1a6d_A          456 PINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPSGQGGQGQ  535 (545)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC----------------
T ss_pred             HHHHHHHHHHHhhcCCCCcceecccCccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Confidence            999999999876   35899999999999999999999999999999999999999999999999988773321 23226


Q ss_pred             CCCCCCC-CCC
Q 016809          373 GMGGMGG-MDY  382 (382)
Q Consensus       373 ~~~~~~~-~~~  382 (382)
                      |||| || |||
T Consensus       536 ~~~~-~~~~~~  545 (545)
T 1a6d_A          536 GMPG-GGMPEY  545 (545)
T ss_dssp             -----------
T ss_pred             CCCC-CCCCCC
Confidence            7877 44 444

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=100.00  E-value=2.3e-67  Score=546.46  Aligned_cols=325  Identities=21%  Similarity=0.324  Sum_probs=268.7

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHHHHH----
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVRVL----   72 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~~~l----   72 (382)
                      |.+.+|+++.|+ ++++|++|++++.+|       +|+++++||+||++|++             |++++++.+++    
T Consensus       206 I~ki~Ggs~~ds-~lv~Gmvfdk~~~~~-------~m~~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~  277 (590)
T 3p9d_C          206 VEKIPGGDVLDS-RVLKGVLLNKDVVHP-------KMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEE  277 (590)
T ss_dssp             EEEESSCCGGGC-BCCSSEEECCCCSCT-------TSCSCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHH
T ss_pred             EEEecCCCcccc-eeeeEEEEecccCCC-------CCcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHH
Confidence            345579999886 899999999998876       38899999999999995             34566665554    


Q ss_pred             -------HHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           73 -------ELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        73 -------e~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                             ++|.+.|++|||++++|++.|+++|.+++      |+++     +++++++|+|||++|||+++++     ++
T Consensus       278 ~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~------I~av-----~~~~k~~le~ia~~TGa~iis~-----l~  341 (590)
T 3p9d_C          278 EQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGG------CSVL-----RRVKKSDNNRIARVTGATIVNR-----VE  341 (590)
T ss_dssp             HHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTT------CCCC-----CCCCHHHHHHHHHHHTCCCCSC-----ST
T ss_pred             HHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhcc------ceee-----ccCCHHHHHHHHHHhCCceeec-----cc
Confidence                   68899999999999999999999999988      4554     4778999999999999999998     99


Q ss_pred             cCCcCCCce-eeEEE---EecceEEEEcCCCChhh--------------------------HHHHHHHHHHHHhhcCChH
Q 016809          146 KVNLDMLGT-CKKVT---ISKDDTVILDGAGDKKS--------------------------IEERCEQIRSAIENSTSDY  195 (382)
Q Consensus       146 ~l~~~~lG~-~~~v~---i~~~~~~~~~~~~~~~~--------------------------i~~~~~~l~~~~~~~~s~~  195 (382)
                      ++++++||+ |++|+   +++++|+||++|++++.                          ++.|+++++.+++.+.|+|
T Consensus       342 ~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~~~~~~~~~~  421 (590)
T 3p9d_C          342 DLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHH  421 (590)
T ss_dssp             TCCTTSCBCCCSEEECCEETTEECEEECC---------------------------------------------------
T ss_pred             CCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCccccccccccccccccchhhhhcchhhHHHHHHHHHHHHHHhccCCHH
Confidence            999999999 99998   45799999999998888                          9999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHH
Q 016809          196 DKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKI  273 (382)
Q Consensus       196 ~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~  273 (382)
                      +++     +++|+|++|||+|||+|+.+++|++|+++|||+++|++++++ +|||||++|+++|..|++++.+ ++++|+
T Consensus       422 ~~~-----~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~  496 (590)
T 3p9d_C          422 HHH-----HHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQW  496 (590)
T ss_dssp             -----------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCSTTHH
T ss_pred             HHH-----HHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCChHHHH
Confidence            866     578999999999999999999999999999999999999996 9999999999999999998766 789999


Q ss_pred             HHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHh
Q 016809          274 GVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLM  350 (382)
Q Consensus       274 ~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~i  350 (382)
                      ++++|++||+.||++||+|||+|+.+++.+|++.|   ++++|||+.+|++.||++.|||||+.||+++|++|+|+|++|
T Consensus       497 ~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~i  576 (590)
T 3p9d_C          497 PYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLL  576 (590)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTCCEEHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCCeEcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999976   568999999999999999999999999999999999999999


Q ss_pred             hchhhhhccCCcc
Q 016809          351 TTTEAIVVELPKE  363 (382)
Q Consensus       351 L~id~iI~~~~~~  363 (382)
                      ||||++|...|+.
T Consensus       577 L~id~ii~~~~~~  589 (590)
T 3p9d_C          577 LRVDDIVSGVRKQ  589 (590)
T ss_dssp             TSEEEEECCCC--
T ss_pred             HHHHHHHhcCCCC
Confidence            9999999887654

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=100.00  E-value=7.5e-65  Score=525.69  Aligned_cols=307  Identities=24%  Similarity=0.370  Sum_probs=276.0

Q ss_pred             cccCCC--ce-------EEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC---------
Q 016809            2 EKVGKE--GV-------ITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK---------   61 (382)
Q Consensus         2 ~~~G~~--g~-------i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~---------   61 (382)
                      .+||++  |+       |.++  +|+++.|+ ++++|++|+++|.||+       |+++++||+|+++|++         
T Consensus       190 ~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIll~d~~Le~~k~e~~  261 (553)
T 3ko1_A          190 TQVAELRGDKWYVDLDNIQIVKKAGGSINDT-QLVYGIVVDKEVVHPG-------MPKRLENAKIALIDASLEVEKPELD  261 (553)
T ss_dssp             HHHCCCTTSSCCCCGGGEEEEECCCSCGGGC-EEESEEEECSCBSCTT-------SCSCCBSCEEEEECSCBSCCCCTTT
T ss_pred             HHHHHhcCCceEEechhHHHHHHhCCccccc-eeeEEEEecccccCCC-------CccccccceEEEecCcccccCcccC
Confidence            356665  87       6665  78888775 9999999999999998       5778999999999994         


Q ss_pred             ----CCCHHH-----------HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHH
Q 016809           62 ----ISNLTA-----------VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQD  126 (382)
Q Consensus        62 ----I~~~~~-----------l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~  126 (382)
                          |+++++           +.+++++|.+.|+||||++++|++.++++|.+++      |++|+     ++++++|+|
T Consensus       262 ~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~g------I~~v~-----~v~k~~ler  330 (553)
T 3ko1_A          262 AEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKG------VLAVR-----RAKKSDLEK  330 (553)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHT------CEEEC-----CCCHHHHHH
T ss_pred             ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcc------hhhhh-----hhhhhhHHH
Confidence                677777           4567899999999999999999999999999877      67887     557999999


Q ss_pred             HHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 016809          127 LAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQER  203 (382)
Q Consensus       127 la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~r  203 (382)
                      ||++|||+++++     ++++++++||+|+.|++.   +++|+||.+|+++                             
T Consensus       331 ia~~tGa~ivs~-----l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~-----------------------------  376 (553)
T 3ko1_A          331 LARATGGRVVSN-----IDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP-----------------------------  376 (553)
T ss_dssp             HHTTTTCCEESC-----GGGCCSSSSEECSEEECCCCSSSCCEEEESCSSS-----------------------------
T ss_pred             HHHhhCCeeecc-----cccCChhhcchHHHHHHhhcCcceEEEeccCCCC-----------------------------
Confidence            999999999999     999999999999999976   7899999999864                             


Q ss_pred             HhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHH
Q 016809          204 LAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNA  281 (382)
Q Consensus       204 l~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~A  281 (382)
                            ..|||+|||+|+.+++|++|+++||||++|+++++| +|||||++|++|+..|++++.+ ++++|+++++|++|
T Consensus       377 ------~~~TI~lrG~te~~l~E~er~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~A  450 (553)
T 3ko1_A          377 ------KSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANA  450 (553)
T ss_dssp             ------SCEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred             ------ceEEEeeeccHHHHHHHHHHHHHHHHHHHHHHhhcCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHH
Confidence                  478999999999999999999999999999999999 9999999999999999999876 88999999999999


Q ss_pred             hhhhHHHHHHHcCCCHHHHHHHHHhcC---C-CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhh
Q 016809          282 LKTPVHTIAANAGVEGAVVVGKLLEQD---N-TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIV  357 (382)
Q Consensus       282 L~~ip~~L~~NaG~d~~~vi~~l~~~~---~-~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI  357 (382)
                      |+.||++||+|||+|+.+++.+|++.|   + .++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|
T Consensus       451 Le~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii  530 (553)
T 3ko1_A          451 LESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVV  530 (553)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEETTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEEC
T ss_pred             HHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEEeecCCchHHHHhCccchhhhhhhhhhhcchhheEEEehHHHH
Confidence            999999999999999999999999987   2 679999999999999999999999999999999999999999999999


Q ss_pred             ccCCccCCCC
Q 016809          358 VELPKEEKEA  367 (382)
Q Consensus       358 ~~~~~~~~~~  367 (382)
                      ..+|++.|.+
T Consensus       531 ~~~~~~~~~~  540 (553)
T 3ko1_A          531 SAGKKSGGES  540 (553)
T ss_dssp             CC--------
T ss_pred             HhhhhccCCC
Confidence            9988776653

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=100.00  E-value=1e-64  Score=524.69  Aligned_cols=299  Identities=20%  Similarity=0.365  Sum_probs=272.8

Q ss_pred             EEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHH------
Q 016809           10 ITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAV------   68 (382)
Q Consensus        10 i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l------   68 (382)
                      |.++  +|++++|+ ++++|++|+++|.||+       |++.++||+||+++++             |++++++      
T Consensus       198 I~V~k~~G~~~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~  269 (543)
T 1a6d_B          198 IQVVKKQGGAIDDT-QLINGIIVDKEKVHPG-------MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQ  269 (543)
T ss_dssp             EEEEEEESSCGGGC-EEESEEEESCCCSSTT-------SCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHH
T ss_pred             EEEEEecCCCccce-eEEccEEEecCCCCCC-------CcceecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHH
Confidence            6666  99999986 9999999999999998       4677999999999999             7777775      


Q ss_pred             -----HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc
Q 016809           69 -----VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD  143 (382)
Q Consensus        69 -----~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~  143 (382)
                           .+++++|.+.|+||||++++|++.|+++|..|+      |+||+     ++++++|+|||++|||+++++     
T Consensus       270 E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~-----~v~k~~le~ia~~tGa~iis~-----  333 (543)
T 1a6d_B          270 EENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAG------IYAVR-----RVKKSDMDKLAKATGASIVST-----  333 (543)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHTCCEESC-----
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCC------eeEec-----cCCHHHHHHHHHHhCCceecc-----
Confidence                 788999999999999999999999999999998      68887     667999999999999999998     


Q ss_pred             cccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016809          144 LEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS  220 (382)
Q Consensus       144 l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t  220 (382)
                      ++++++++||+|+.|++.   +++|+||++|++                                   +.+|||+|||+|
T Consensus       334 l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-----------------------------------~~~~TI~lrG~t  378 (543)
T 1a6d_B          334 IDEISSSDLGTAERVEQVKVGEDYMTFVTGCKN-----------------------------------PKAVSILVRGET  378 (543)
T ss_dssp             GGGCCGGGCEEEEEEEEEEETTEEEEEEEEESS-----------------------------------SSCEEEEEEESS
T ss_pred             cccCCHHHCCCceEEEEEEecCceEEEEecCCC-----------------------------------CceEEEEecCCC
Confidence            999999999999999986   789999999875                                   368999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      +.+++|++|+++|||+++|+++++| +|||||++|++++..|++++.+ ++++|+++++|++||+.||++||+|||+|+.
T Consensus       379 ~~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~  458 (543)
T 1a6d_B          379 EHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPI  458 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence            9999999999999999999999999 9999999999999999999866 7899999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCC
Q 016809          299 VVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEA  367 (382)
Q Consensus       299 ~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~  367 (382)
                      +++++|++.|   +.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|...|++.|++
T Consensus       459 ~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~  530 (543)
T 1a6d_B          459 DILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSSN  530 (543)
T ss_dssp             HHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC---------
T ss_pred             HHHHHHHHHHhCCCCCeeEeCCCCcccchhhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCC
Confidence            9999999876   35899999999999999999999999999999999999999999999999988765554

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=100.00  E-value=1.8e-63  Score=512.21  Aligned_cols=301  Identities=24%  Similarity=0.348  Sum_probs=277.3

Q ss_pred             cccCCC---ceEEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEecc--------------CC
Q 016809            2 EKVGKE---GVITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK--------------KI   62 (382)
Q Consensus         2 ~~~G~~---g~i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~--------------~I   62 (382)
                      .+||++   |+|.++  +|++..|+ ++++|++|+++|.+|        |+++++||+||++|+              +|
T Consensus       175 ~~V~~~~d~~~I~V~ki~gg~~~ds-~lv~G~v~dk~~~~~--------m~~~~en~kIll~~~~Le~~k~e~~~~~v~i  245 (513)
T 3iyg_B          175 LRLKGSGNLEAIHVIKKLGGSLADS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANTGMDTDKIKIFGSRVRV  245 (513)
T ss_pred             HHhcccCCcCeEEEEEeCCCCccce-eEEeeEEEeccccCC--------CceeecCceEEEEcCCcccccccccCCceEE
Confidence            457777   888775  58988886 999999999999886        788999999999999              36


Q ss_pred             CCHHHHHH-----------HHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHH
Q 016809           63 SNLTAVVR-----------VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLT  131 (382)
Q Consensus        63 ~~~~~l~~-----------~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~t  131 (382)
                      ++++++.+           ++++|.++|+||||++++|++.++++|..++      |+|||+|+     +.+|+|||++|
T Consensus       246 ss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~------I~av~~~~-----~~~le~ia~~t  314 (513)
T 3iyg_B          246 DSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAG------VMAIEHAD-----FVGVERLALVT  314 (513)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcC------ceEEecCC-----HHHHHHHHHHh
Confidence            67777654           6899999999999999999999999999887      79999886     57899999999


Q ss_pred             CCeEeccCCCCccccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhc
Q 016809          132 GGDLITEELGMDLEKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLS  208 (382)
Q Consensus       132 G~~ii~~~~~~~l~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~  208 (382)
                      ||+++++     ++++++++||+|++|+   ++++++++|.+|++                                   
T Consensus       315 Ga~ii~~-----l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-----------------------------------  354 (513)
T 3iyg_B          315 GGEIAST-----FDHPELVKLGSCKLIEEVMIGEDKLIHFSGVAL-----------------------------------  354 (513)
T ss_pred             CCEEecc-----cccCCHhHCCcccEEEEEEECCeEEEEEecCCC-----------------------------------
Confidence            9999999     9999999999999999   55789999999874                                   


Q ss_pred             CCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhH
Q 016809          209 GGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPV  286 (382)
Q Consensus       209 g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip  286 (382)
                      +++|||+|||+|+.+++|++|+++|||+++|++++++ +|||||++|++|+..|++++.+ ++++|+++++|++||+.||
T Consensus       355 ~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip  434 (513)
T 3iyg_B          355 GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLP  434 (513)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999996 9999999999999999999876 8899999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCc
Q 016809          287 HTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK  362 (382)
Q Consensus       287 ~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~  362 (382)
                      ++||+|||+|+.+++++|++.|   +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|..+|+
T Consensus       435 ~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~  513 (513)
T 3iyg_B          435 TIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR  513 (513)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCccchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999987   467999999999999999999999999999999999999999999999988653

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=2e-63  Score=511.79  Aligned_cols=303  Identities=17%  Similarity=0.261  Sum_probs=275.9

Q ss_pred             cccCCC---ceEEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CC
Q 016809            2 EKVGKE---GVITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------IS   63 (382)
Q Consensus         2 ~~~G~~---g~i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~   63 (382)
                      .+||.+   |+|.++  +|++..|+ ++++|++|+++|.||||++    +|.+++||+||++|++             |+
T Consensus       175 ~~V~~~~d~~~I~V~k~~Gg~~~ds-~lv~G~~~dk~~~~p~~~~----~p~~~en~kIll~~~~Le~~k~e~~~~v~is  249 (515)
T 3iyg_H          175 MMLDDLLQLKMIGIKKVQGGALEES-QLVAGVAFKKTFSYAGFEM----QPKKYHNPMIALLNVELELKAEKDNAEIRVH  249 (515)
T ss_pred             HHhcccCCcceEEEEecCCCCccce-EEEeeeEEecCccCccccc----CCccccccEEEEEcccccccccccCceEEeC
Confidence            346666   787665  58888875 9999999999999999864    4568999999999995             67


Q ss_pred             CHHHH-----------HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHC
Q 016809           64 NLTAV-----------VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTG  132 (382)
Q Consensus        64 ~~~~l-----------~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG  132 (382)
                      +++++           .+++++|.+.|+||||++++|++.++++|.+++      |++++     ++++++|+|||++||
T Consensus       250 ~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~g------I~~v~-----~~~k~~leria~~tG  318 (515)
T 3iyg_H          250 TVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRD------MFCAG-----RVPEEDLKRTMMACG  318 (515)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcC------Ccccc-----cccHHHHHHHHHHhC
Confidence            77776           566899999999999999999999999998776      45665     667999999999999


Q ss_pred             CeEeccCCCCccccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcC
Q 016809          133 GDLITEELGMDLEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSG  209 (382)
Q Consensus       133 ~~ii~~~~~~~l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g  209 (382)
                      |+++++     ++++++++||+|+.|++.   +++++||++|+++                                   
T Consensus       319 a~ii~~-----l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-----------------------------------  358 (515)
T 3iyg_H          319 GSIQTS-----VNALSSDVLGRCQVFEETQIGGERYNFFTGCPKA-----------------------------------  358 (515)
T ss_pred             CEEeec-----cccCCHHHCCcccEEEEEEEcCeEEEEEecCCCC-----------------------------------
Confidence            999999     999999999999999976   6899999998763                                   


Q ss_pred             CeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHH
Q 016809          210 GVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVH  287 (382)
Q Consensus       210 ~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~  287 (382)
                      ..|||+|||+|+.+++|++|+++||||++|++++++ +|||||++|++++..|++++.+ ++++|+++++|++||+.||+
T Consensus       359 ~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~  438 (515)
T 3iyg_H          359 KTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPR  438 (515)
T ss_pred             ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCeecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999996 9999999999999999999877 88999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccC
Q 016809          288 TIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL  360 (382)
Q Consensus       288 ~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~  360 (382)
                      +||+|||+|+.+++.+|++.|   +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.++
T Consensus       439 ~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~  514 (515)
T 3iyg_H          439 QLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNP  514 (515)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhhccCCCeeEeCCCCcccccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999987   3579999999999999999999999999999999999999999999999764

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=2.8e-63  Score=512.40  Aligned_cols=298  Identities=18%  Similarity=0.269  Sum_probs=269.5

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC-------------CCHHH---------
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA---------   67 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I-------------~~~~~---------   67 (382)
                      |.+.+|+++.|+ ++++|++|+++|.||+       |++.++||+|+++++++             +++++         
T Consensus       191 I~k~~G~~~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~  262 (529)
T 3iyg_A          191 VLKAHGRSQMES-MLINGYALNCVVGSQG-------MPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRES  262 (529)
T ss_pred             EEEecCCCccce-EEEeeeEEecCccccc-------CCcccCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHH
Confidence            445689998885 9999999999999997       56789999999999974             34433         


Q ss_pred             --HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc-c
Q 016809           68 --VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD-L  144 (382)
Q Consensus        68 --l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~-l  144 (382)
                        +.+++++|.+.|+||||++++|++.++++|.+|+      |+||+     ++++++|+|||++|||+++++..+++ .
T Consensus       263 ~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~g------I~av~-----~v~k~~leria~~tGa~iv~~~~~l~~~  331 (529)
T 3iyg_A          263 DITKERIQKILATGANVILTTGGIDDMCLKYFVEAG------AMAVR-----RVLKRDLKRIAKASGATVLSTLANLEGE  331 (529)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC------Cceec-----cCCHHHHHHHHHHhCCeeecchhcccch
Confidence              4577899999999999999999999999999998      68888     56799999999999999999943333 2


Q ss_pred             ccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016809          145 EKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE  221 (382)
Q Consensus       145 ~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~  221 (382)
                      +++++++||+|+.|+   +++++++||.+|+++                                   .+|||+|||+|+
T Consensus       332 e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-----------------------------------~~~TI~lrG~t~  376 (529)
T 3iyg_A          332 ETFEASMLGQAEEVVQERICDDELILIKNTKAR-----------------------------------TSASVILRGAND  376 (529)
T ss_pred             hccChhhCccceEEEEEEeCCceEEEEEcCCCC-----------------------------------ceEEEEECCchH
Confidence            445678899999999   668899999998763                                   489999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016809          222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV  299 (382)
Q Consensus       222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~  299 (382)
                      .+++|.+|+++|||+++|+++++| +|||||++|++||.+|++++.+ ++++|+++++|++||+.||++||+|||+|+.+
T Consensus       377 ~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~  456 (529)
T 3iyg_A          377 FMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTD  456 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            999999999999999999999999 9999999999999999999877 78999999999999999999999999999999


Q ss_pred             HHHHHHhcC---C--------CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016809          300 VVGKLLEQD---N--------TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP  361 (382)
Q Consensus       300 vi~~l~~~~---~--------~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~  361 (382)
                      ++++|++.|   +        .++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|..+|
T Consensus       457 ~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~  529 (529)
T 3iyg_A          457 LVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP  529 (529)
T ss_pred             HHHHHHHHHhccccccccccCceeeeeCCCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Confidence            999999977   2        5799999999999999999999999999999999999999999999998743

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=7.1e-63  Score=507.91  Aligned_cols=292  Identities=20%  Similarity=0.318  Sum_probs=270.1

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEecc-------------CCCCHHHHHHHHH---
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK-------------KISNLTAVVRVLE---   73 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~-------------~I~~~~~l~~~le---   73 (382)
                      |.+.+|++++|+ ++++|++|+++|.||.       |+++++||+|+++++             +|++++++.++++   
T Consensus       189 I~ki~Ggs~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~  260 (515)
T 3iyg_G          189 VEKIPGGIIEDS-CVLRGVMINKDVTHPR-------MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEE  260 (515)
T ss_pred             EEEecCCCcccc-eEEeeEEEeCCCCCCC-------CcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHH
Confidence            455689999876 8999999999999985       788999999999999             4678888887776   


Q ss_pred             --------HHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           74 --------LALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        74 --------~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                              +|.+.|++|||++++|++.++++|.+++      |+||+     ++++++|+|||++|||+++++     ++
T Consensus       261 ~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~------I~av~-----~~~k~~leria~~tGa~ii~~-----l~  324 (515)
T 3iyg_G          261 EYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRAN------ITAIR-----RVRKTDNNRIARACGARIVSR-----PE  324 (515)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCC------ceeec-----cCCHHHHHHHHHHhCCeeecc-----cc
Confidence                    8999999999999999999999998877      67775     667999999999999999999     99


Q ss_pred             cCCcCCCce-eeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016809          146 KVNLDMLGT-CKKVTISK---DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE  221 (382)
Q Consensus       146 ~l~~~~lG~-~~~v~i~~---~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~  221 (382)
                      ++++++||+ |+.|++.+   ++|+||++|+++                                   ..|||+|||+|+
T Consensus       325 ~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~-----------------------------------~~~TIllrG~t~  369 (515)
T 3iyg_G          325 ELREEDVGTGAGLLEIKKIGDEYFTFITECKDP-----------------------------------KACTILLRGASK  369 (515)
T ss_pred             ccChhhcCCcccEEEEEEECCceEEEEeCCCCC-----------------------------------CeEEEEEcCCCH
Confidence            999999999 99999764   589999999864                                   479999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016809          222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV  299 (382)
Q Consensus       222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~  299 (382)
                      .+++|.+|+++|||+++|++++++ +|||||++|++++.+|++++.+ ++++|+++++|++||+.||++||+|||+|+.+
T Consensus       370 ~~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~  449 (515)
T 3iyg_G          370 EILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIR  449 (515)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            999999999999999999999877 9999999999999999999877 89999999999999999999999999999999


Q ss_pred             HHHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccC
Q 016809          300 VVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL  360 (382)
Q Consensus       300 vi~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~  360 (382)
                      ++++|++.|    +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|...
T Consensus       450 ~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~  514 (515)
T 3iyg_G          450 LLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGH  514 (515)
T ss_pred             HHHHHHHHHHhcCCCceeeeCCCCcccccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheeecC
Confidence            999999877    3579999999999999999999999999999999999999999999999764

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=100.00  E-value=9.5e-65  Score=524.98  Aligned_cols=303  Identities=17%  Similarity=0.248  Sum_probs=275.1

Q ss_pred             ceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHHH----
Q 016809            8 GVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVR----   70 (382)
Q Consensus         8 g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~~----   70 (382)
                      |++.+. |++++|+ ++++|++|+++|.||||++    |+..++||+||++|++             |++++++.+    
T Consensus       200 ~Vikv~-Gg~~~ds-~lv~G~~~dk~~~s~yf~~----~~~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~  273 (550)
T 3p9d_G          200 GIKKIP-GGAMEES-LFINGVAFKKTFSYAGFEQ----QPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDA  273 (550)
T ss_dssp             CCCBCC-SSCGGGC-CCCSSEEECCCSSCTTCSC----SCSCCSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHH
T ss_pred             eEEEec-CCCccce-eEEeeEEEecccccccccc----CcccccCceEEEeccccccccccccceeeeCCHHHHHHHHHH
Confidence            777665 9999997 9999999999999999864    5667999999999998             456666544    


Q ss_pred             -------HHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc
Q 016809           71 -------VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD  143 (382)
Q Consensus        71 -------~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~  143 (382)
                             ++++|.++|++|||++++|++.++++|.+++      |++++     ++++++|++||++||++++++     
T Consensus       274 E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~g------I~~v~-----~v~k~~lerIa~~tGa~iis~-----  337 (550)
T 3p9d_G          274 EWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRN------IFCAG-----RVSADDMNRVIQAVGGSIQST-----  337 (550)
T ss_dssp             HHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGT------CEEEE-----CCCTTHHHHHHHHTCCCCBSS-----
T ss_pred             HHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcC------Ccccc-----CcCHHHHHHHHHHhCCceecc-----
Confidence                   6788999999999999999999999997766      57776     557899999999999999999     


Q ss_pred             cccCCcCCCceeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016809          144 LEKVNLDMLGTCKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS  220 (382)
Q Consensus       144 l~~l~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t  220 (382)
                      ++++++++||+|+.|++   .++++++|.+|+++                                   ++|||+|||+|
T Consensus       338 l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~-----------------------------------~~~tI~lrG~t  382 (550)
T 3p9d_G          338 TSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQA-----------------------------------KTCTLLLRGGA  382 (550)
T ss_dssp             GGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTC-----------------------------------CCCCCCBCSSS
T ss_pred             hhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCC-----------------------------------ceeEEEEeCCc
Confidence            99999999999999997   46899999998753                                   58999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      +.+++|+||+++||||++|+++++| +|||||++|++++..|++++.+ ++++|+++++|++||+.||++||+|||+|+.
T Consensus       383 e~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~  462 (550)
T 3p9d_G          383 EQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAI  462 (550)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            9999999999999999999999999 9999999999999999999776 8899999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCC
Q 016809          299 VVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEA  367 (382)
Q Consensus       299 ~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~  367 (382)
                      +++++|++.|   ++++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|..+|+++++.
T Consensus       463 ~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~~~  534 (550)
T 3p9d_G          463 EILNKLRLAHSKGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESANA  534 (550)
T ss_dssp             HHHHHHHHHHHHSCSCCCBCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCCCC----
T ss_pred             HHHHHHHHHHhcCCCceeeeCCCCcccchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCCcccccC
Confidence            9999999876   56899999999999999999999999999999999999999999999999988776543

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=100.00  E-value=1.4e-63  Score=517.03  Aligned_cols=302  Identities=20%  Similarity=0.346  Sum_probs=275.5

Q ss_pred             EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeec--CceEEEeccCC-------------CCHHH--------
Q 016809           11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELE--DPLILVHEKKI-------------SNLTA--------   67 (382)
Q Consensus        11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~--~p~Ill~d~~I-------------~~~~~--------   67 (382)
                      .+.+|++++|+ ++++|++|+++|.||+       |+++++  ||+|++++++|             +++++        
T Consensus       206 ~k~~Ggs~~ds-~lv~G~v~dk~~~~~~-------m~~~ie~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E  277 (559)
T 3p9d_A          206 LKAHGKSATES-LLVPGYALNCTVASQA-------MPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKRE  277 (559)
T ss_dssp             EEEESSCSSCC-BCCSEECCCCCCSSTT-------SCSEECSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHH
T ss_pred             EEecCCCccce-eEeccEEEeecccCCC-------cceeeccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHH
Confidence            34459999985 8999999999999998       577888  99999999986             34444        


Q ss_pred             ---HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCcc
Q 016809           68 ---VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL  144 (382)
Q Consensus        68 ---l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l  144 (382)
                         +.+++++|.++|+||||++++|+++|+++|..|+      |++|+     ++++++|+|||++|||+++++..++.+
T Consensus       278 ~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~------I~av~-----~~~k~~le~ia~~TGa~iis~~~~l~~  346 (559)
T 3p9d_A          278 AGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAK------IMGVR-----RCKKEDLRRIARATGATLVSSMSNLEG  346 (559)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTT------CEEES-----SCCHHHHHHHHHHSSCCCBCCSCCSTT
T ss_pred             HHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcC------CceEc-----cCCHHHHHHHHHHhCCEEEeccccccc
Confidence               6788999999999999999999999999999999      68887     567999999999999999999555544


Q ss_pred             -ccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016809          145 -EKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS  220 (382)
Q Consensus       145 -~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t  220 (382)
                       +++++++||+|++|+   +++++|+||.+|++                                   +++|||+|||+|
T Consensus       347 ~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-----------------------------------~~~~tI~lrG~t  391 (559)
T 3p9d_A          347 EETFESSYLGLCDEVVQAKFSDDECILIKGTSK-----------------------------------HSSSSIILRGAN  391 (559)
T ss_dssp             CCCCCTTTSCCEEEEEEEECSSCEEECEEEESS-----------------------------------SCCCCEEEEESC
T ss_pred             cccCCHhHCccceEEEEEEEcCceEEEEEcCCC-----------------------------------CCEEEEEEcCCC
Confidence             789999999999999   46789999999875                                   468999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      +.+++|++|+++|||+++|+++++| +|||||++|++|+.+|++++.+ ++++|+++++|++||+.||++||+|||+|+.
T Consensus       392 e~~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~  471 (559)
T 3p9d_A          392 DYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSS  471 (559)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999999999999999999 9999999999999999999877 7899999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CC------------ceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016809          299 VVVGKLLEQD---NT------------DLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE  363 (382)
Q Consensus       299 ~vi~~l~~~~---~~------------~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~  363 (382)
                      +++.+|++.|   +.            ++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|...|++
T Consensus       472 ~vv~~l~~~h~~~~~~~~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~  551 (559)
T 3p9d_A          472 ELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPEP  551 (559)
T ss_dssp             HHHHHHHHHHHTTSCCC----CCCCCCCEEECTTSSSEEESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECCCCC
T ss_pred             HHHHHHHHHHhccccccccccccccccceeEECCCCcEeehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcCCcc
Confidence            9999999876   33            79999999999999999999999999999999999999999999999998776


Q ss_pred             CCC
Q 016809          364 EKE  366 (382)
Q Consensus       364 ~~~  366 (382)
                      ++.
T Consensus       552 ~~~  554 (559)
T 3p9d_A          552 PKE  554 (559)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            644

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=3.6e-62  Score=502.92  Aligned_cols=289  Identities=18%  Similarity=0.280  Sum_probs=265.2

Q ss_pred             EEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHH----------
Q 016809           12 IHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAV----------   68 (382)
Q Consensus        12 ~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l----------   68 (382)
                      +.+|+++.|+ ++++|++|+++|.||+|       ++.+++|+|++++++             |++++++          
T Consensus       191 k~~Ggs~~ds-~lv~G~~~dk~~~~~~m-------~~~~~~~kIall~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~  262 (515)
T 3iyg_E          191 GKVGGRLEDT-KLIKGVIVDKDFSHPQM-------PKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEK  262 (515)
T ss_pred             EecCCCcccc-eEEeeEEEecccccccc-------cccCCCceEEEEcCccccccccccceeeeCCHHHHHHHHHHHHHH
Confidence            3468998885 99999999999999985       555678888887776             5566765          


Q ss_pred             -HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccC
Q 016809           69 -VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKV  147 (382)
Q Consensus        69 -~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l  147 (382)
                       .++++++.+.|+||||++++|+++|+++|..|+      +.+++++     ++++|+|||++|||+++++     ++++
T Consensus       263 l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~------I~~v~~v-----~k~~le~ia~~tGa~ii~~-----l~~l  326 (515)
T 3iyg_E          263 FEEMIRQIKETGANLAVCQWGFDDEANHLLLQND------LPAVRWV-----GGPEIELIAIATGGRIVPR-----FSEL  326 (515)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCC------CEEEecc-----CHHHHHHHHHHhCCEEecc-----cccC
Confidence             578999999999999999999999999999999      5778755     5899999999999999999     9999


Q ss_pred             CcCCCceeeEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016809          148 NLDMLGTCKKVTI-----SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA  222 (382)
Q Consensus       148 ~~~~lG~~~~v~i-----~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~  222 (382)
                      ++++||+|++|++     ++++++||++|+++                                   ..|||+|||+|+.
T Consensus       327 ~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~-----------------------------------~~~tI~lrG~te~  371 (515)
T 3iyg_E          327 TAEKLGFAGLVKEISFGTTKDKMLVIEQCKNS-----------------------------------RAVTIFIRGGNKM  371 (515)
T ss_pred             CHHHCCcceEEEEEEeccccceEEEEEcCCCC-----------------------------------ceEEEEEeCCcHH
Confidence            9999999999997     45899999999864                                   4789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016809          223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV  300 (382)
Q Consensus       223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v  300 (382)
                      +++|++|+++|||+++|+++++| +|||||++|++++..|++++.+ ++++|+++++|++||+.||++||+|||+|+.++
T Consensus       372 ~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~  451 (515)
T 3iyg_E          372 IIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQT  451 (515)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999999 9999999999999999999877 789999999999999999999999999999999


Q ss_pred             HHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016809          301 VGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE  359 (382)
Q Consensus       301 i~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~  359 (382)
                      +.+|++.|    +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+
T Consensus       452 v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~  514 (515)
T 3iyg_E          452 MTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP  514 (515)
T ss_pred             HHHHHHHHhccCCCeeeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence            99999875    367999999999999999999999999999999999999999999999975

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1.2e-61  Score=499.02  Aligned_cols=300  Identities=19%  Similarity=0.275  Sum_probs=271.1

Q ss_pred             cccCC---Cce-----EEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC---------
Q 016809            2 EKVGK---EGV-----ITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI---------   62 (382)
Q Consensus         2 ~~~G~---~g~-----i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I---------   62 (382)
                      .+||+   +|.     |.++  +|++..|+ ++++|++|+++|.| .       ||..++||+|+++++++         
T Consensus       171 ~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds-~lv~G~~~dk~~~~-~-------mp~~i~n~kIlll~~~Le~~k~~~~~  241 (518)
T 3iyg_D          171 MKVIDPATATSVDLRDIKIVKKLGGTIDDC-ELVEGLVLTQKVAN-S-------GITRVEKAKIGLIQFCLSAPKTDMDN  241 (518)
T ss_pred             HHhhccccCCCcccceEEEEEcCCCChhhh-eEeccEEEeccccc-C-------CCccccCceEEEEEeeccccccccCc
Confidence            34664   666     5544  68888875 99999999999987 3       67778999999999975         


Q ss_pred             ----CCHHH-----------HHHHHHHHHHcCCCEEEE-----ecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhh
Q 016809           63 ----SNLTA-----------VVRVLELALKRQRPLLIV-----AEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKA  122 (382)
Q Consensus        63 ----~~~~~-----------l~~~le~i~~~~~~lvI~-----~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~  122 (382)
                          +++++           +.+++++|.+.|+||||+     +++|++.++++|..|+      |+||++|+     +.
T Consensus       242 ~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~------I~av~~~~-----~~  310 (518)
T 3iyg_D          242 QIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMK------IMVVKDIE-----RE  310 (518)
T ss_pred             eEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcC------cEEEecCC-----HH
Confidence                34543           578899999999999999     8999999999999988      79999886     56


Q ss_pred             hHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe---c-ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHH
Q 016809          123 NMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS---K-DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKE  198 (382)
Q Consensus       123 ~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~---~-~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~  198 (382)
                      +|+|||++|||+++++     ++++++++||+|+.|++.   + +++++|++|++                         
T Consensus       311 ~le~ia~~tGa~ii~~-----l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~-------------------------  360 (518)
T 3iyg_D          311 DIEFICKTIGTKPVAH-----VDQFTADMLGSAELAEEVSLNGSGKLIKITGCAS-------------------------  360 (518)
T ss_pred             HHHHHHHHhCCEEecc-----cccCCHHHCCcCcEEEEEEeCCCceEEEEECCCC-------------------------
Confidence            8999999999999999     999999999999999975   3 57889999864                         


Q ss_pred             HHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHH
Q 016809          199 KLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQ  276 (382)
Q Consensus       199 ~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~  276 (382)
                               ++++|||+|||+|+.+++|++|+++|||+++|+++++| +|||||++|++++..|++++.+ ++++|++++
T Consensus       361 ---------~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~  431 (518)
T 3iyg_D          361 ---------PGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIR  431 (518)
T ss_pred             ---------CCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEeecCcHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence                     24689999999999999999999999999999999999 9999999999999999999876 889999999


Q ss_pred             HHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhch
Q 016809          277 IIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTT  353 (382)
Q Consensus       277 ~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~i  353 (382)
                      +|++||+.||++||+|||+|+.+++.+|++.|   +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++||||
T Consensus       432 ~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i  511 (518)
T 3iyg_D          432 AFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKI  511 (518)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCCCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999976   457999999999999999999999999999999999999999999


Q ss_pred             hhhhccC
Q 016809          354 EAIVVEL  360 (382)
Q Consensus       354 d~iI~~~  360 (382)
                      |++|+.+
T Consensus       512 D~ii~~~  518 (518)
T 3iyg_D          512 DDVVNTR  518 (518)
T ss_pred             cceEecC
Confidence            9999763

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=100.00  E-value=3.4e-62  Score=507.02  Aligned_cols=301  Identities=18%  Similarity=0.276  Sum_probs=269.0

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHH---------
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTA---------   67 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~---------   67 (382)
                      |.+.+|++++|+ ++++|++|+++|.||+|+++.+ .+..+++|+|++++++             |+++++         
T Consensus       226 I~k~~Ggs~~ds-~lveGmv~dk~~~sp~m~~~~~-~~~~~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~  303 (562)
T 3p9d_E          226 MQGRVGGSISDS-KLINGVILDKDFSHPQMPKCVL-PKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQ  303 (562)
T ss_dssp             EEEESSSCGGGC-EEESSEEESSCCCTTSCCC------TTCSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHH
T ss_pred             EEEecCCChhhh-ceeeeEEEecCCCCCCcCcccc-cccccccceEEEecccccccccccCceEEECCHHHHHHHHHHHH
Confidence            345579999986 9999999999999999765532 1222489999998886             345555         


Q ss_pred             --HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016809           68 --VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE  145 (382)
Q Consensus        68 --l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~  145 (382)
                        +.+++++|.+.|+||||++++|+++++++|..|+      |.+|+++     ++++|+|||++|||+++++     ++
T Consensus       304 ~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~------I~~v~~v-----~k~~le~ia~~TGa~iis~-----l~  367 (562)
T 3p9d_E          304 DKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQND------LPAVRWV-----GGQELEHIAISTNGRIVPR-----FQ  367 (562)
T ss_dssp             HHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTT------CCCEECC-----CTTTHHHHHHHHCCCEEES-----SS
T ss_pred             HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCC------CEEEecc-----CHHHHHHHHHHhCCEEEec-----cc
Confidence              5688999999999999999999999999999999      4577755     5889999999999999999     99


Q ss_pred             cCCcCCCceeeEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016809          146 KVNLDMLGTCKKVTI-----SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS  220 (382)
Q Consensus       146 ~l~~~~lG~~~~v~i-----~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t  220 (382)
                      ++++++||+|+.|++     ++++++||++|+++                                   ..|||+|||+|
T Consensus       368 ~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~-----------------------------------~~~TIllrG~t  412 (562)
T 3p9d_E          368 DLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKET-----------------------------------KTVTCFVRGSN  412 (562)
T ss_dssp             CCCTTSCEECSCEEEECCSSSSCCEEEECCCSCC-----------------------------------SCCEEEEECTT
T ss_pred             cCCHHHCCcceEEEEEEeccCCceEEEEecCCCC-----------------------------------CeEEEEEeCCC
Confidence            999999999999998     35899999999864                                   47899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      +.+++|+||+++|||+++|+++++| +|||||++|++|+..|++++.+ ++++|+++++|++||+.||++||+|||+|+.
T Consensus       413 e~~l~E~kr~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~  492 (562)
T 3p9d_E          413 KMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPI  492 (562)
T ss_dssp             TTTHHHHTHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            9999999999999999999999999 9999999999999999999877 7899999999999999999999999999999


Q ss_pred             HHHHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016809          299 VVVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE  363 (382)
Q Consensus       299 ~vi~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~  363 (382)
                      +++.+|++.|    +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+++.+
T Consensus       493 ~vv~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~  561 (562)
T 3p9d_E          493 GTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGKDE  561 (562)
T ss_dssp             HHHHHHHHHHHHTTTSSBCCBTTTTBCCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEECCC--
T ss_pred             HHHHHHHHHHhhcCCCceeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            9999999865    4689999999999999999999999999999999999999999999999886543

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=100.00  E-value=4.5e-63  Score=510.47  Aligned_cols=304  Identities=20%  Similarity=0.251  Sum_probs=275.9

Q ss_pred             cccCC--CceEEEEe-------CCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC---------
Q 016809            2 EKVGK--EGVITIHD-------GKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS---------   63 (382)
Q Consensus         2 ~~~G~--~g~i~~~~-------G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~---------   63 (382)
                      .+||+  +|.|.+..       |++++|+ ++++|++|+++|.||+|      |++.++||+|++++++|+         
T Consensus       179 ~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds-~lv~G~v~dk~~~~~~~------m~~~ien~kIll~~~~le~~k~~~~~~  251 (528)
T 3p9d_D          179 LKISDENSKNVDLNDIRLVKKVGGTIDDT-EMIDGVVLTQTAIKSAG------GPTRKEKAKIGLIQFQISPPKPDTENN  251 (528)
T ss_dssp             HTTCCTTTTCCCGGGSBCCCCCSSCSCCC-EEESSCBCCCCCCCSSS------CCSEESSEEEEEECCCSSCCCCSSEEE
T ss_pred             HHhccccCCccceEEEEEEEecCCCccce-EEEeeeEEeecccCccc------CcccccCceEEEEeccccccccccCce
Confidence            35666  57665544       9999885 99999999999999985      788999999999999876         


Q ss_pred             ----CHHH-----------HHHHHHHHHHcCCCEEEEecCC-----cHHHHHHHHHccccCCceEEEEecCCCCcchhhh
Q 016809           64 ----NLTA-----------VVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKAN  123 (382)
Q Consensus        64 ----~~~~-----------l~~~le~i~~~~~~lvI~~~~i-----~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~  123 (382)
                          ++++           +.+++++|.+.|+||||++++|     ++.++++|..|+      |+||+     ++++++
T Consensus       252 i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~------I~av~-----~~~k~~  320 (528)
T 3p9d_D          252 IIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLN------IMVVK-----DIEREE  320 (528)
T ss_dssp             EEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTS------CCEEE-----CCCTHH
T ss_pred             EEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcC------cEEEE-----eCCHHH
Confidence                4443           6788999999999999999999     999999999887      68998     446899


Q ss_pred             HHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHH
Q 016809          124 MQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKL  200 (382)
Q Consensus       124 le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l  200 (382)
                      |+|||++|||+++++     ++++++++||+|+.|++.   ++++++|.+|....                         
T Consensus       321 le~ia~~tGa~ii~~-----~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~-------------------------  370 (528)
T 3p9d_D          321 IEFLSKGLGCKPIAD-----IELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNN-------------------------  370 (528)
T ss_dssp             HHHHHHHHTCCCCSC-----STTCCSSSEEEESCEECCEETTEECCBCTTBCCGG-------------------------
T ss_pred             HHHHHHHHCCEEecc-----cccCCHHHCCcccEEEEEEECCEEEEEEEcccccC-------------------------
Confidence            999999999999999     899999999999999965   56888898876310                         


Q ss_pred             HHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHH
Q 016809          201 QERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQII  278 (382)
Q Consensus       201 ~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~  278 (382)
                             .+++|||+|||+|+.+++|+||+++|||+++|+++++| +|||||++|++|+..|++++.+ ++++|+++++|
T Consensus       371 -------~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~  443 (528)
T 3p9d_D          371 -------ARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEF  443 (528)
T ss_dssp             -------GCCCCEEECCCSSTTHHHHHHHHHTTTHHHHHHHHHSSCEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHH
T ss_pred             -------CCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence                   15789999999999999999999999999999999999 9999999999999999999876 89999999999


Q ss_pred             HHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhh
Q 016809          279 QNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEA  355 (382)
Q Consensus       279 a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~  355 (382)
                      ++||+.||++||+|||+|+.+++.+|++.|   +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||+
T Consensus       444 a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~  523 (528)
T 3p9d_D          444 ASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDD  523 (528)
T ss_dssp             HHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCCCSSSSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccceecCCCCccchHhccCeecHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999999999999999999999999999987   47899999999999999999999999999999999999999999999


Q ss_pred             hhccC
Q 016809          356 IVVEL  360 (382)
Q Consensus       356 iI~~~  360 (382)
                      +|..+
T Consensus       524 ii~~~  528 (528)
T 3p9d_D          524 IAFSR  528 (528)
T ss_dssp             CCBCC
T ss_pred             heecC
Confidence            99763

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=4.9e-61  Score=494.17  Aligned_cols=287  Identities=22%  Similarity=0.348  Sum_probs=257.8

Q ss_pred             EeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CHHHHH----------
Q 016809           13 HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTAVV----------   69 (382)
Q Consensus        13 ~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~~~l~----------   69 (382)
                      .+|++..|+ ++++|++|+++|.||+       |+++++||+||+++++|+             +++++.          
T Consensus       188 ~~Gg~~~ds-~lv~G~v~dk~~~~p~-------m~~~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i  259 (517)
T 3iyg_Z          188 MKHKSETDT-SLIRGLVLDHGARHPD-------MKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFI  259 (517)
T ss_pred             ecCCCcccc-ceEeeEEEeccCCCCC-------ccccccCCeEEEecccccccccccceeEEeCCHHHHHHHHHHHHHHH
Confidence            356777775 8999999999999997       788999999999999853             444433          


Q ss_pred             -HHHHHHHHcCCC--------E-EEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccC
Q 016809           70 -RVLELALKRQRP--------L-LIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE  139 (382)
Q Consensus        70 -~~le~i~~~~~~--------l-vI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~  139 (382)
                       ..+++|...+.+        + ||++++|++.++++|.+++      |++|++     +++++|+|||++|||+++++ 
T Consensus       260 ~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~g------I~~v~~-----v~~~~leria~~tGa~iv~~-  327 (517)
T 3iyg_Z          260 EDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEG------IIALRR-----AKRRNMERLTLACGGIALNS-  327 (517)
T ss_pred             HHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHCC------CEEEEe-----cCHHHHHHHHHHhCCEEecc-
Confidence             345666655544        3 5667999999999999987      678884     46889999999999999999 


Q ss_pred             CCCccccCCcCC-CceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEE
Q 016809          140 LGMDLEKVNLDM-LGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLK  215 (382)
Q Consensus       140 ~~~~l~~l~~~~-lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~  215 (382)
                          ++++++++ ||+|+ |+   +++++++||++|+++                                   ..|||+
T Consensus       328 ----l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~-----------------------------------~~~TI~  367 (517)
T 3iyg_Z          328 ----LDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNP-----------------------------------RSVTLL  367 (517)
T ss_pred             ----hhhCcccccCCcce-EEEEEEcCceEEEEeCCCCc-----------------------------------hhheee
Confidence                99999999 99999 94   567899999999864                                   368999


Q ss_pred             ecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHc
Q 016809          216 IGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANA  293 (382)
Q Consensus       216 lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~Na  293 (382)
                      |||+|+.+++|.||+++||||++|+++++| +|||||++|+++|..|++++.+ ++++|+++++|++||+.+|++||+||
T Consensus       368 lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~Na  447 (517)
T 3iyg_Z          368 IKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNS  447 (517)
T ss_pred             ecCCcHHHHHHHHHHHHHHHHHHHHHHhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999 9999999999999999999877 89999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016809          294 GVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE  359 (382)
Q Consensus       294 G~d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~  359 (382)
                      |+|+.+++.+|++.|   +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+
T Consensus       448 G~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  516 (517)
T 3iyg_Z          448 GFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRA  516 (517)
T ss_pred             CCCHHHHHHHHHHHHhcCCCcEEEeCCCCcccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999987   467999999999999999999999999999999999999999999999965

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=9.1e-61  Score=492.16  Aligned_cols=299  Identities=18%  Similarity=0.299  Sum_probs=267.3

Q ss_pred             cccCCC-ceEEEE-------eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC------------
Q 016809            2 EKVGKE-GVITIH-------DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK------------   61 (382)
Q Consensus         2 ~~~G~~-g~i~~~-------~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~------------   61 (382)
                      .+||++ |+|.++       +|+++.| +++++|++|+++|.+         |++.++||+|++++++            
T Consensus       172 ~~V~~~~~~i~v~~I~i~k~~Ggs~~d-s~lv~G~~~dk~~~~---------~~~~~~n~kI~ll~~~le~~~~e~k~~v  241 (512)
T 3iyg_Q          172 VSIFPDSGHFNVDNIRVCKILGSGVHS-SSVLHGMVFKKETEG---------DVTSVKDAKIAVYSCPFDGMITETKGTV  241 (512)
T ss_pred             HHHhccCCcccHhHeeEeeccCCCccc-ceEEeeEEEecCcCC---------CCcccccCceEEEecccccccccccceE
Confidence            457776 566543       5999876 499999999999875         3556778888888876            


Q ss_pred             -CCCHHHHHHH-------HH----HHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHH
Q 016809           62 -ISNLTAVVRV-------LE----LALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAV  129 (382)
Q Consensus        62 -I~~~~~l~~~-------le----~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~  129 (382)
                       |++++++.++       ++    +|.++|+||||++++|++.++++|.+++      |+|||+|+     +.+|+|||+
T Consensus       242 ~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~------I~av~~~~-----~~dle~ia~  310 (512)
T 3iyg_Q          242 LIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYN------IMLVRLNS-----KWDLRRLCK  310 (512)
T ss_pred             EeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCC------eEEEEeCC-----HHHHHHHHH
Confidence             5567787765       44    8999999999999999999999998766      89999876     567999999


Q ss_pred             HHCCeEeccCCCCccccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhh
Q 016809          130 LTGGDLITEELGMDLEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAK  206 (382)
Q Consensus       130 ~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~  206 (382)
                      +|||+++++     ++++++++||+|++|++.   ++++++|.+|+.                                 
T Consensus       311 ~tGa~iis~-----l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~---------------------------------  352 (512)
T 3iyg_Q          311 TVGATALPR-----LNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKE---------------------------------  352 (512)
T ss_pred             HhCCEEecc-----cccCCHHHCCcccEEEEEEeCCeEEEEEEcccC---------------------------------
Confidence            999999999     999999999999999976   458899998752                                 


Q ss_pred             hcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhh
Q 016809          207 LSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKT  284 (382)
Q Consensus       207 l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~  284 (382)
                       ++++|||+|||+|+.+++|++|+++|||+++|+++++| +|||||++|++++..|++++.+ ++++|+++++|++||+.
T Consensus       353 -~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~  431 (512)
T 3iyg_Q          353 -DGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEA  431 (512)
T ss_pred             -CCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence             35799999999999999999999999999999999999 9999999999999999999876 88999999999999999


Q ss_pred             hHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCC--ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016809          285 PVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKG--EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE  359 (382)
Q Consensus       285 ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~--~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~  359 (382)
                      ||++||+|||+|+.+++++|++.|   ++++|||+.+|  ++.||++.|||||+.||+++|++|+|+|++|||||++|++
T Consensus       432 ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~  511 (512)
T 3iyg_Q          432 IPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMA  511 (512)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCcccchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHheec
Confidence            999999999999999999999876   57899999965  9999999999999999999999999999999999999975


Q ss_pred             C
Q 016809          360 L  360 (382)
Q Consensus       360 ~  360 (382)
                      +
T Consensus       512 k  512 (512)
T 3iyg_Q          512 K  512 (512)
T ss_pred             C
Confidence            3

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=100.00  E-value=5.6e-63  Score=510.21  Aligned_cols=305  Identities=19%  Similarity=0.298  Sum_probs=274.5

Q ss_pred             cccCCCc---eEEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC--------------C
Q 016809            2 EKVGKEG---VITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK--------------I   62 (382)
Q Consensus         2 ~~~G~~g---~i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~--------------I   62 (382)
                      ++||++|   +|.++  +|+++.|+ ++++|++|+++|.||+        +..++||+|++++++              |
T Consensus       182 ~~V~~~~~~~~I~V~k~~gg~~~ds-~lv~G~~~dk~~~~~~--------p~~~~n~kIlll~~~le~~k~~~~~~~v~i  252 (527)
T 3p9d_B          182 LRLKGSTNLEHIQIIKILGGKLSDS-FLDEGFILAKKFGNNQ--------PKRIENAKILIANTTLDTDKVKIFGTKFKV  252 (527)
T ss_dssp             HTTCTTCCTTSSCCCBCCCSSSSCC-CEESSCCCSCCCSSSC--------CSCCSSCEEEEECSCSSCCCCSSCCCBCCC
T ss_pred             HHhcccCCcceEEEEEcCCCCcccc-EEEEeEEEecccCCCC--------CeeeecceEEEeccccccccccccCceEEE
Confidence            5788888   77665  68998885 9999999999999985        445789999999886              3


Q ss_pred             CCHHHH-----------HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHH
Q 016809           63 SNLTAV-----------VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLT  131 (382)
Q Consensus        63 ~~~~~l-----------~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~t  131 (382)
                      ++++++           .+++++|.++|+||||++++|++.++++|..|+      |++|+++     ++.+|+|||++|
T Consensus       253 ~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~~------i~av~~~-----~~~dle~ia~~t  321 (527)
T 3p9d_B          253 DSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLG------INSIEHA-----DFEGVERLALVT  321 (527)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHTC------BCCCCCC-----HHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHCC------CEEEecC-----CHHHHHHHHHHh
Confidence            455554           578899999999999999999999999999998      6888866     477899999999


Q ss_pred             CCeEeccCCCCccccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhc
Q 016809          132 GGDLITEELGMDLEKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLS  208 (382)
Q Consensus       132 G~~ii~~~~~~~l~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~  208 (382)
                      ||+++++     ++++++++||+|+.|+   ++++++++|.+|++                                   
T Consensus       322 Ga~iv~~-----~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-----------------------------------  361 (527)
T 3p9d_B          322 GGEVVST-----FDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKA-----------------------------------  361 (527)
T ss_dssp             CCCCCST-----TSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCC-----------------------------------
T ss_pred             CCEEecc-----hhhCCHHHCCCCcEEEEEEecceEEEEEECCCC-----------------------------------
Confidence            9999999     8999999999999999   45789999999874                                   


Q ss_pred             CCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhH
Q 016809          209 GGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPV  286 (382)
Q Consensus       209 g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip  286 (382)
                      +++|||+|||+|+.+++|++|+++||||++|+++++| +|||||++|++++..|++++.+ ++++|+++++|++||+.||
T Consensus       362 ~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip  441 (527)
T 3p9d_B          362 GEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLP  441 (527)
T ss_dssp             SCCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCCCEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999 9999999999999999999876 8899999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016809          287 HTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE  363 (382)
Q Consensus       287 ~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~  363 (382)
                      ++||+|||+|+.+++++|++.|   +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|..+|++
T Consensus       442 ~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~  521 (527)
T 3p9d_B          442 TILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRT  521 (527)
T ss_dssp             HHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCSSSTTCCCHHHHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred             HHHHhccCCCHHHHHHHHHHHHhcCCCceeEECCCCCCcchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence            9999999999999999999876   4689999999999999999999999999999999999999999999999998877


Q ss_pred             CCC
Q 016809          364 EKE  366 (382)
Q Consensus       364 ~~~  366 (382)
                      +.+
T Consensus       522 ~~~  524 (527)
T 3p9d_B          522 ANR  524 (527)
T ss_dssp             ---
T ss_pred             cCC
Confidence            554

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=100.00  E-value=1.7e-62  Score=509.86  Aligned_cols=301  Identities=18%  Similarity=0.250  Sum_probs=258.8

Q ss_pred             eEEE--EeCCccceeeEEEEeEEEeecccCcccccccccCceeec---CceEEEeccC-------------CCCHHHHHH
Q 016809            9 VITI--HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELE---DPLILVHEKK-------------ISNLTAVVR   70 (382)
Q Consensus         9 ~i~~--~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~---~p~Ill~d~~-------------I~~~~~l~~   70 (382)
                      .|.+  .+|++++|+ ++++|++|+++|.         .|++.++   ||+|++++++             |++++++.+
T Consensus       206 ~I~I~k~~Ggs~~dS-~lv~G~v~dk~~~---------~m~~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~  275 (568)
T 3p9d_H          206 SIRVVKIMGGSLSNS-TVIKGMVFNREPE---------GHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLD  275 (568)
T ss_dssp             GCEEEEEESSCGGGC-EEESSCCBSSCBS---------SGGGSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHH
T ss_pred             eEEEEEccCCCcchh-eeeccEEEeeccc---------CCcEEEecCCcceEEEEccCccccccccCceEEeCCHHHHHH
Confidence            4544  569999987 9999999999874         2788888   9999999998             667877654


Q ss_pred             -----------HHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccC
Q 016809           71 -----------VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE  139 (382)
Q Consensus        71 -----------~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~  139 (382)
                                 ++++|.+.|+||||++++|++.++++|.+++      |+||++++     +++|+|||++|||+++++ 
T Consensus       276 ~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~g------I~av~~v~-----~~~leria~~tGa~ivs~-  343 (568)
T 3p9d_H          276 FSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYG------ILVLKVPS-----KFELRRLCRVCGATPLPR-  343 (568)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHT------CEEECCCC-----HHHHHHHHHHHSCCCCSS-
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCC------eEEEecCC-----HHHHHHHHHHhCCEEEec-
Confidence                       7889999999999999999999999999988      79999774     789999999999999999 


Q ss_pred             CCCccccCCcCCCceeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEe
Q 016809          140 LGMDLEKVNLDMLGTCKKVTISK---DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKI  216 (382)
Q Consensus       140 ~~~~l~~l~~~~lG~~~~v~i~~---~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~l  216 (382)
                          ++++++++||+|+.|++.+   ++++||.+|+.                                 +++++|||+|
T Consensus       344 ----l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~---------------------------------l~~~~~TIll  386 (568)
T 3p9d_H          344 ----LGAPTPEELGLVETVKTMEIGGDRVTVFKQEQG---------------------------------EISRTSTIIL  386 (568)
T ss_dssp             ----SSCCCGGGCEECSCCCCCEETTEECBCCCCCSS---------------------------------SCCSSCEEEE
T ss_pred             ----cccCCHHHCCcceEEEEEEecCceEEEEecCCC---------------------------------CCCCeEEEEE
Confidence                9999999999999998654   89999999862                                 2356899999


Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHhh--cC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHH
Q 016809          217 GGASEAEVGEKKDRVTDALNATKAAVE--EG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAAN  292 (382)
Q Consensus       217 rG~t~~~l~E~~r~l~dal~~~~~a~~--~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~N  292 (382)
                      ||+|+.+++|.||+++|||+++|++++  ++ +|||||++|++|+.+|++++.+ ++++|+++++|++||+.||++||+|
T Consensus       387 rG~t~~~l~E~er~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~N  466 (568)
T 3p9d_H          387 RGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAET  466 (568)
T ss_dssp             EESCHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999  76 9999999999999999999877 8899999999999999999999999


Q ss_pred             cCCCHHHHHHHHHhcCC-----------CceeEeCCCCc---cccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016809          293 AGVEGAVVVGKLLEQDN-----------TDLGYDAAKGE---YVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV  358 (382)
Q Consensus       293 aG~d~~~vi~~l~~~~~-----------~~~Gid~~~~~---i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~  358 (382)
                      ||+|+.+++++|++.|.           +++|||+.+|+   +.||++.|||||+.||+++|+.|+|+|++|||||++|.
T Consensus       467 aG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~  546 (568)
T 3p9d_H          467 AGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIM  546 (568)
T ss_dssp             HTCCHHHHHHHHHHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC--------
T ss_pred             cCCCHHHHHHHHHHHhhhhcccccccCCCceeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence            99999999999999873           47999999997   99999999999999999999999999999999999999


Q ss_pred             cCCccCCCCC
Q 016809          359 ELPKEEKEAP  368 (382)
Q Consensus       359 ~~~~~~~~~~  368 (382)
                      .+|.+.|++|
T Consensus       547 ~~~~~~~~~~  556 (568)
T 3p9d_H          547 AKKAGGPRAP  556 (568)
T ss_dssp             ----------
T ss_pred             ccccCCCCCC
Confidence            9988877653

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=100.00  E-value=6e-61  Score=496.73  Aligned_cols=293  Identities=19%  Similarity=0.310  Sum_probs=258.4

Q ss_pred             EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CHHHH---------
Q 016809           11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTAV---------   68 (382)
Q Consensus        11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~~~l---------   68 (382)
                      .+.+|++..|+ ++++|++|+++|.||+       |+++++||+||+++++++             +++++         
T Consensus       197 ~ki~Gg~~~ds-~lv~G~v~dk~~~~~~-------m~~~~en~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~  268 (546)
T 3p9d_F          197 MQMQHLSPKDT-TFIKGLVLDHGGRHPD-------MPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERK  268 (546)
T ss_dssp             ECCCCSCTTTC-CCCSSCEESCCCCSSS-------SCSSBCSCCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHH
T ss_pred             EEecCCCcccc-EEEeeEEEeccccccc-------CcceecCceEEEecCcccccccccCceEEEcCHHHHHHHHHHHHH
Confidence            34568888876 8999999999999985       788999999999998753             22222         


Q ss_pred             --HHHHHHHHHc---------CCC-EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEe
Q 016809           69 --VRVLELALKR---------QRP-LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLI  136 (382)
Q Consensus        69 --~~~le~i~~~---------~~~-lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii  136 (382)
                        ...+++|...         ++| |||++++|++.|+++|.+|+      |++|++     +++++|+|||++|||+++
T Consensus       269 ~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~g------I~~vr~-----v~~~~leria~~tGa~ii  337 (546)
T 3p9d_F          269 FVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHN------ILALRR-----AKRRNMERLQLVTGGEAQ  337 (546)
T ss_dssp             HHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTT------CEEECC-----CCHHHHHHHHHTTTBCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCC------CeeEec-----CCHHHHHHHHHHhCCEEe
Confidence              2345666553         444 66778899999999999998      588884     468899999999999999


Q ss_pred             ccCCCCccccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEE
Q 016809          137 TEELGMDLEKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAV  213 (382)
Q Consensus       137 ~~~~~~~l~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~T  213 (382)
                      ++     ++++++++||+|+.|+   +++++|+||++|+++                                   ..||
T Consensus       338 ~~-----l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-----------------------------------~~~t  377 (546)
T 3p9d_F          338 NS-----VEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP-----------------------------------KSCT  377 (546)
T ss_dssp             CC-----CSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCC-----------------------------------SCEE
T ss_pred             cc-----hhhCCHhHCCcccEEEEEEecCceEEEEecCCCC-----------------------------------ceEE
Confidence            99     9999999999999995   567899999999864                                   4799


Q ss_pred             EEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHH---hccC-ChhhHHHHHHHHHHhhhhHHH
Q 016809          214 LKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEK---LSTA-NFDQKIGVQIIQNALKTPVHT  288 (382)
Q Consensus       214 I~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~---~~~~-~~~~~~~~~~~a~AL~~ip~~  288 (382)
                      |+|||+|+.+++|++|+++||||++|+++++| +|||||++|+++|..|++   |+.+ ++++|+++++|++||+.||++
T Consensus       378 I~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~  457 (546)
T 3p9d_F          378 ILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKT  457 (546)
T ss_dssp             EECCCSCHHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 999999999999999998   4666 889999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHhcC--------CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccC
Q 016809          289 IAANAGVEGAVVVGKLLEQD--------NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL  360 (382)
Q Consensus       289 L~~NaG~d~~~vi~~l~~~~--------~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~  360 (382)
                      ||+|||+|+.+++.+|++.|        +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.++
T Consensus       458 La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~  537 (546)
T 3p9d_F          458 LVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAG  537 (546)
T ss_dssp             HHTTTCCTTTTCCHHHHHHHHHHTTSTTSSCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred             HHHHcCCCHHHHHHHHHHHhhhhhcccCCceeeEeCCCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999764        3579999999999999999999999999999999999999999999999875


Q ss_pred             Cc
Q 016809          361 PK  362 (382)
Q Consensus       361 ~~  362 (382)
                      +.
T Consensus       538 ~~  539 (546)
T 3p9d_F          538 RS  539 (546)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8.8e-46  Score=326.34  Aligned_cols=193  Identities=51%  Similarity=0.854  Sum_probs=188.9

Q ss_pred             eEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHcc
Q 016809           22 LEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNK  101 (382)
Q Consensus        22 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~  101 (382)
                      +++++||.|++||+||||+|++++|..+++||+||++|.+|+++++++|+||++.+.++||+|++++++.+||+.|+.|+
T Consensus         2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs~i~~ilP~LE~~~~~~kpLlIIAedvegeaLatLvvNk   81 (194)
T 3m6c_A            2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNA   81 (194)
T ss_dssp             CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHH
T ss_pred             eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEecccccchhhhhhhhh
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEecceEEEEcCCCChhhHHHHH
Q 016809          102 LRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERC  181 (382)
Q Consensus       102 ~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~  181 (382)
                      ++|.++|||||+|+||+.|+..|+|||.+|||++++.+.++++++++.++||+|+++.+++++|+++.|.+++++|+.||
T Consensus        82 lrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~T~iv~G~g~~~~I~~Rv  161 (194)
T 3m6c_A           82 IRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRA  161 (194)
T ss_dssp             HHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred             ccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccEEEEcCCceEEecCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEE
Q 016809          182 EQIRSAIENSTSDYDKEKLQERLAKLSGGVAVL  214 (382)
Q Consensus       182 ~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI  214 (382)
                      ++|+.+++.+.|+|+|++|+||+++|+|+++.|
T Consensus       162 ~qIr~~ie~t~s~ydkEKLqERlAkLsGGVAVI  194 (194)
T 3m6c_A          162 KHLRAEIDKSDSDWDREKLGERLAKLAGGVAVI  194 (194)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHHHBCCC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHcCCcEEC
Confidence            999999999999999999999999999998754

>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A

Probab=100.00  E-value=2.5e-44  Score=317.77  Aligned_cols=188  Identities=56%  Similarity=0.907  Sum_probs=184.6

Q ss_pred             EEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccC
Q 016809           25 VEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRA  104 (382)
Q Consensus        25 ~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~  104 (382)
                      .+|+.|++||+||||+|++++|..+++||+||++|.+|+++++++|+||++.+.++||||++++|+.+||+.|+.|+++|
T Consensus        12 ~~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs~i~~ilP~LE~v~~~~rpLlIIAEDvegEALatLvvNklrg   91 (201)
T 3osx_A           12 SEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNMRG   91 (201)
T ss_dssp             CCCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEECCHHHHHHHHHHHHTSSCCEEEEEEEECHHHHHHHHHHHHHT
T ss_pred             ccccEecCccCChheeecccCCEEEecCCeEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEeccccchhhhHHHHhhccc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEecceEEEEcCCCChhhHHHHHHHH
Q 016809          105 GIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQI  184 (382)
Q Consensus       105 ~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l  184 (382)
                      .++|||||+|+||+.|+..|+|||++|||++++.+.++++++++.++||+|++|.+++++|+++.|.+++++|+.||++|
T Consensus        92 ~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vtkd~TtIv~G~G~~~~I~~Rv~qI  171 (201)
T 3osx_A           92 IVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQI  171 (201)
T ss_dssp             SCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEcCCceEEecCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHHHhhhcCCeE
Q 016809          185 RSAIENSTSDYDKEKLQERLAKLSGGVA  212 (382)
Q Consensus       185 ~~~~~~~~s~~~~~~l~~rl~~l~g~~~  212 (382)
                      +.+++.+.|+|+||+|+|||++|+|+++
T Consensus       172 r~qie~t~S~ydkEKLqERLAKLsGGVA  199 (201)
T 3osx_A          172 RQQIEESTSDYDREKLQERVAKLAGGVK  199 (201)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999999876

>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1

Probab=100.00  E-value=7.1e-35  Score=245.74  Aligned_cols=144  Identities=52%  Similarity=0.898  Sum_probs=141.7

Q ss_pred             eEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCc
Q 016809           27 GMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGI  106 (382)
Q Consensus        27 G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~  106 (382)
                      ||.|++||+||||+|++++|..+++||+||++|.+|+++++++|+||++.+.++||+|++++++.+||+.|+.|+++|.+
T Consensus         1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs~i~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklrg~l   80 (145)
T 1srv_A            1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTL   80 (145)
T ss_dssp             CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSC
T ss_pred             CccccCCccCceeecCccccEEEeeccEEEEecccccCHHHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhcccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEecceEEEEcC
Q 016809          107 KVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDG  170 (382)
Q Consensus       107 ~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~~~~~~~~~  170 (382)
                      ++||||+|+||+.|+..|+|||.+||+++++.+.++++++++.++||+|+++.+++++|+++.|
T Consensus        81 ~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~TtIv~G  144 (145)
T 1srv_A           81 SVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGG  144 (145)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEcCCCeEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999875

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A

Probab=99.92  E-value=4.5e-25  Score=196.69  Aligned_cols=145  Identities=17%  Similarity=0.290  Sum_probs=122.4

Q ss_pred             ceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CHHH-----------HHHHHHH
Q 016809           19 YNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTA-----------VVRVLEL   74 (382)
Q Consensus        19 ~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~~~-----------l~~~le~   74 (382)
                      +|| ++++|++|++++.++.       ||+.++||||++++++++             ++++           +..++++
T Consensus         2 ~dS-~lv~Gvvl~k~~~~~~-------mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~k   73 (178)
T 1gml_A            2 EDS-CVLRGVMINKDVTHPR-------MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCED   73 (178)
T ss_dssp             -CC-SEEEEEEESCCCSSTT-------SCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCc-EEEEEEEEeccccCCC-------CCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence            455 8999999999998874       788999999999999854             2222           3467889


Q ss_pred             HHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCce
Q 016809           75 ALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGT  154 (382)
Q Consensus        75 i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~  154 (382)
                      |+++|+||||++++|+|.|++||.+++      |+||+     ++++++|+|||++|||+++++     +++++++.||+
T Consensus        74 I~~~g~nVVl~~k~I~d~a~~~l~k~g------I~~vr-----~v~~~dleria~atGa~iv~~-----~~~l~~~~LG~  137 (178)
T 1gml_A           74 IIQLKPDVVITEKGISDLAQHYLMRAN------VTAIR-----RVRKTDNNRIARACGARIVSR-----PEELREDDVGT  137 (178)
T ss_dssp             HHTTCCSEEEESSCBCHHHHHHHHHTT------CEEEC-----CCCHHHHHHHHHHHCCCEESC-----GGGCCGGGSBC
T ss_pred             HhhcCCcEEEECCcccHHHHHHHHHCC------CEEEe-----cCCHHHHHHHHHHhCCeEeCC-----hhhCChhhhCC
Confidence            999999999999999999999999998      68888     556999999999999999999     99999999999


Q ss_pred             -eeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016809          155 -CKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA  222 (382)
Q Consensus       155 -~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~  222 (382)
                       |+.|++.   +++++||++|+++                                   ..|||+|||+|..
T Consensus       138 ~~~~v~~~~ig~~~~~~~~gc~~~-----------------------------------~~~TIllRG~~~~  174 (178)
T 1gml_A          138 GAGLLEIKKIGDEYFTFITDCKDP-----------------------------------KACTILLRGASHH  174 (178)
T ss_dssp             CEEEEEEEEETTEEEEEEEEESST-----------------------------------TSCEEEEEC----
T ss_pred             cccEEEEEEECCeEEEEEECCCCC-----------------------------------CEEEEEEECCCcc
Confidence             9999954   6899999998754                                   4799999999853

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A

Probab=99.85  E-value=3.1e-21  Score=168.73  Aligned_cols=126  Identities=17%  Similarity=0.319  Sum_probs=111.2

Q ss_pred             EEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CHHH-----------HHHHHHHHHHcCC
Q 016809           25 VEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTA-----------VVRVLELALKRQR   80 (382)
Q Consensus        25 ~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~~~-----------l~~~le~i~~~~~   80 (382)
                      ++|++|++++.++.       ||+.++||||++++++++             ++++           +..++++|+++|+
T Consensus         1 i~Gvv~~k~~~~~~-------mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~   73 (159)
T 1ass_A            1 MSGIVIDKEKVHSK-------MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA   73 (159)
T ss_dssp             CCCEEESCCCSCTT-------SCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CceEEEecccCCCC-------CCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCC
Confidence            47999999999874       788999999999999854             3433           3467889999999


Q ss_pred             CEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEE
Q 016809           81 PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTI  160 (382)
Q Consensus        81 ~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i  160 (382)
                      ||||++++|+|.|+++|.+++      |+||+     ++++++|+|||++|||+++++     +++++++.||+|+.|++
T Consensus        74 nVVl~~k~I~d~a~~~l~k~g------I~~v~-----~v~~~dleria~atGa~iv~~-----~~~l~~~~LG~~~~v~e  137 (159)
T 1ass_A           74 NVVLCQKGIDDVAQHYLAKEG------IYAVR-----RVKKSDMEKLAKATGAKIVTD-----LDDLTPSVLGEAETVEE  137 (159)
T ss_dssp             SEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHTCCCBSS-----TTSCCTTSCEEEEEEEE
T ss_pred             eEEEECCccCHHHHHHHHHCC------CEEEc-----cCCHHHHHHHHHHhCCeeeCc-----cccCCcccCccceEEEE
Confidence            999999999999999999998      68888     556999999999999999999     99999999999999996


Q ss_pred             e---cceEEEEcCCCC
Q 016809          161 S---KDDTVILDGAGD  173 (382)
Q Consensus       161 ~---~~~~~~~~~~~~  173 (382)
                      .   ++++++|++|++
T Consensus       138 ~~ig~~~~~~~~g~~~  153 (159)
T 1ass_A          138 RKIGDDRMTFVMGCKN  153 (159)
T ss_dssp             EEETTEEEEEEESCC-
T ss_pred             EEECCeEEEEEECCCC
Confidence            4   589999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	382
d1kida_	193	c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta	5e-93
d1ioka2	176	c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de	5e-90
d1sjpa2	184	c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium	3e-88
d1srva_	145	c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus	2e-69
d1ioka1	252	a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par	4e-45
d1ioka1	252	a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par	2e-06
d1kp8a1	252	a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc	3e-36
d1kp8a1	252	a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc	3e-15
d1we3a1	255	a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The	4e-28
d1we3a1	255	a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The	4e-10
d1sjpa1	180	a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My	3e-20
d1a6da1	245	a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai	7e-20
d1a6db1	243	a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai	2e-17
d1sjpa3	89	d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My	3e-17
d1sjpa3	89	d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My	3e-04
d1q3qa1	258	a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain	9e-17
d1q3qa1	258	a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain	1e-07
d1we3a3	86	d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th	1e-12
d1we3a3	86	d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th	5e-04
d1ioka3	97	d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa	7e-12
d1ioka3	97	d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa	4e-05
d1kp8a3	97	d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es	1e-10
d1kp8a3	97	d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es	1e-07

>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score =  274 bits (703), Expect = 5e-93
 Identities = 108/191 (56%), Positives = 142/191 (74%)

Query: 21  ELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQR 80
                EGM+ DRGY+SPYFI   +    ELE P IL+ +KKISN+  ++ VLE   K  +
Sbjct: 3   VPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGK 62

Query: 81  PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 140
           PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ RKA +QD+A LTGG +I+EE+
Sbjct: 63  PLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEI 122

Query: 141 GMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKL 200
           GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R  QIR  IE +TSDYD+EKL
Sbjct: 123 GMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKL 182

Query: 201 QERLAKLSGGV 211
           QER+AKL+GGV
Sbjct: 183 QERVAKLAGGV 193

>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Paracoccus denitrificans [TaxId: 266]

 Score =  266 bits (682), Expect = 5e-90
 Identities = 110/176 (62%), Positives = 141/176 (80%)

Query: 26  EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIV 85
           EGM+ DRGY+SPYF+TN      ELED  IL+HEKK+S+L  +V +LE  ++ Q+PLLIV
Sbjct: 1   EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIV 60

Query: 86  AEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145
           AEDVE EALATL++NKLR G+K+ A+KAPGFG+ RKA +QD+A+LTGG +I+E+LGM LE
Sbjct: 61  AEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLE 120

Query: 146 KVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQ 201
            V +DMLG  KKV+I+KD+T I+DGAG+K  IE R  QIR  IE +TSDYD+EKLQ
Sbjct: 121 NVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQ 176

>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score =  262 bits (671), Expect = 3e-88
 Identities = 100/184 (54%), Positives = 139/184 (75%)

Query: 27  GMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVA 86
           GM+ D+GYIS YF+T+ + Q+  LEDP IL+   K+S +  ++ +LE  +   +PLLI+A
Sbjct: 1   GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60

Query: 87  EDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEK 146
           EDVE EAL+TL++NK+R   K  A+KAPGFG+ RKA +QD+A+LTGG +I+EE+G+ LE 
Sbjct: 61  EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 120

Query: 147 VNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAK 206
            +L +LG  +KV ++KD+T I++GAGD  +I  R  QIR  IENS SDYD+EKLQERLAK
Sbjct: 121 ADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAK 180

Query: 207 LSGG 210
           L+GG
Sbjct: 181 LAGG 184

>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Thermus thermophilus [TaxId: 274]

 Score =  213 bits (543), Expect = 2e-69
 Identities = 75/144 (52%), Positives = 105/144 (72%)

Query: 27  GMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVA 86
           G + D+GYISPYF+TN +  +  LED  IL+ EKK+SN+  ++ +LE   +  +PLLI+A
Sbjct: 1   GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60

Query: 87  EDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEK 146
           EDVE EALATL++NKLR  + V A+KAPGFG+ RK  ++D+A +TGG +I+EELG  LE 
Sbjct: 61  EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120

Query: 147 VNLDMLGTCKKVTISKDDTVILDG 170
             L MLG  ++V I+KD+T I+ G
Sbjct: 121 ATLSMLGRAERVRITKDETTIVGG 144

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

 Score =  153 bits (388), Expect = 4e-45
 Identities = 89/259 (34%), Positives = 126/259 (48%), Gaps = 14/259 (5%)

Query: 110 AIKAPGFGEN-RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVIL 168
           A K   F  + R   ++ + +L   D +   LG     V +D      ++T  KD   + 
Sbjct: 1   AAKEVKFNSDARDRMLKGVNILA--DAVKVTLGPKGRNVVIDKSFGAPRIT--KDGVSVA 56

Query: 169 DGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIG------GASEA 222
                    E    Q+   +    S  + E             A+++ G      G +  
Sbjct: 57  KEIELSDKFENMGAQM---VREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPM 113

Query: 223 EVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNAL 282
           ++    D  T  +     +   GIV GGGVAL+  AK LE LS AN DQ  G+ II+ AL
Sbjct: 114 DLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRAL 173

Query: 283 KTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVD 342
           + P+  IA NAGV+GAVV GK+ E  +   G++A   EY DM K G+IDP KV+RTAL D
Sbjct: 174 EAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALED 233

Query: 343 AASVSSLMTTTEAIVVELP 361
           AASV+ L+ TTEA++ E P
Sbjct: 234 AASVAGLLITTEAMIAEKP 252

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 6/71 (8%)

Query: 1   MEKVGKEGVITIHDGKTLYNELEVVE------GMKLDRGYISPYFITNQKNQKCELEDPL 54
            E  G +G +     +   ++           G     G I P  +     +       L
Sbjct: 181 AENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGL 240

Query: 55  ILVHEKKISNL 65
           ++  E  I+  
Sbjct: 241 LITTEAMIAEK 251

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

 Score =  130 bits (328), Expect = 3e-36
 Identities = 76/258 (29%), Positives = 118/258 (45%), Gaps = 11/258 (4%)

Query: 110 AIKAPGFGEN-RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVIL 168
           A K   FG +     ++ + VL   D +   LG     V LD       +T  KD   + 
Sbjct: 1   AAKDVKFGNDAGVKMLRGVNVLA--DAVKVTLGPKGRNVVLDKSFGAPTIT--KDGVSVA 56

Query: 169 DGAGDKKSIEERCE----QIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEV 224
                +   E        ++ S   ++  D          A ++ G+  +   G +  ++
Sbjct: 57  REIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVA-AGMNPMDL 115

Query: 225 GEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKT 284
               D+          A+  G+V GGGVAL+  A +L  L   N DQ +G+++   A++ 
Sbjct: 116 KRGIDKAVTVAVEELKALSVGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEA 175

Query: 285 PVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAA 344
           P+  I  N G E +VV   +   D  + GY+AA  EY +M+  GI+DP KV R+AL  AA
Sbjct: 176 PLRQIVLNCGEEPSVVANTVKGGD-GNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA 234

Query: 345 SVSSLMTTTEAIVVELPK 362
           SV+ LM TTE +V +LPK
Sbjct: 235 SVAGLMITTECMVTDLPK 252

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

 Score = 72.5 bits (177), Expect = 3e-15
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 13/78 (16%)

Query: 1   MEKVGKEGVITIH-------------DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQK 47
           ME   ++ V+                DG   YN      G  +D G + P  +T    Q 
Sbjct: 173 MEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQY 232

Query: 48  CELEDPLILVHEKKISNL 65
                 L++  E  +++L
Sbjct: 233 AASVAGLMITTECMVTDL 250

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

 Score =  108 bits (271), Expect = 4e-28
 Identities = 84/258 (32%), Positives = 128/258 (49%), Gaps = 12/258 (4%)

Query: 112 KAPGFGEN-RKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDG 170
           K   F E  R+A  + +  +   + +   LG     V L+        TI+KD   +   
Sbjct: 2   KILVFDEAARRALERGVNAVA--NAVKVTLGPRGRNVVLE--KKFGSPTITKDGVTVAKE 57

Query: 171 AGDKKSIEERCEQIRSAIENSTSDYDKEKLQERL----AKLSGGVAVLKIGGASEAEVGE 226
              +  +E    Q+   + + T+D   +          A +  G+  +  G    A    
Sbjct: 58  VELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRG 117

Query: 227 KKDRVTDALNATKAAVE-EGIVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKT 284
            +  V  A+   KA     GIVPGGGV LL A   +E+L      D+  G +I++ AL+ 
Sbjct: 118 IEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEE 177

Query: 285 PVHTIAANAGVEGAVVVGKL-LEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDA 343
           P   IA NAG EG+V+V ++  E  N   G++AA GE+VDMV++GI+DP KV R+AL +A
Sbjct: 178 PARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNA 237

Query: 344 ASVSSLMTTTEAIVVELP 361
           AS+ +L+ TTEA+V E P
Sbjct: 238 ASIGALILTTEAVVAEKP 255

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

 Score = 57.6 bits (138), Expect = 4e-10
 Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 15/80 (18%)

Query: 1   MEKVGKEGVITIHDGKTLYNE------------LEVVEGMKLD---RGYISPYFITNQKN 45
           +E+  ++         ++  +                 G  +D    G + P  +T    
Sbjct: 175 LEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSAL 234

Query: 46  QKCELEDPLILVHEKKISNL 65
           Q       LIL  E  ++  
Sbjct: 235 QNAASIGALILTTEAVVAEK 254

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score = 85.2 bits (210), Expect = 3e-20
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 268 NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKS 327
             D+  G  I++ AL+ P+  IA N+G+E  VV  K+        G +A  G Y D++ +
Sbjct: 95  EGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGH-GLNAQTGVYEDLLAA 153

Query: 328 GIIDPLKVIRTALVDAASVSSLMTTTE 354
           G+ DP+KV R+AL +AAS++ L  TTE
Sbjct: 154 GVADPVKVTRSALQNAASIAGLFLTTE 180

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 85.9 bits (212), Expect = 7e-20
 Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 4/205 (1%)

Query: 157 KVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKI 216
            + IS D   IL     +    +   ++  A + +  D     +      L     +L  
Sbjct: 41  DIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQ 100

Query: 217 GGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS-TANFDQKIGV 275
           G          +  V +A        E+  + GGG      A  L K + +    +++ +
Sbjct: 101 GVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAI 160

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDN---TDLGYDAAKGEYVDMVKSGIIDP 332
           +    AL+    T+A NAG++    + KL   D      +G D       DM   G++DP
Sbjct: 161 EAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDP 220

Query: 333 LKVIRTALVDAASVSSLMTTTEAIV 357
           L+V   AL  A  V++++   + ++
Sbjct: 221 LRVKTHALESAVEVATMILRIDDVI 245

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 78.6 bits (193), Expect = 2e-17
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 10/222 (4%)

Query: 141 GMD--LEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKE 198
           GMD  L     D++ T   VTI K+  V    A     + +  +        +       
Sbjct: 26  GMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGG 85

Query: 199 KLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAA 258
            LQ+    ++  V    I         E K  + +   +TK A   G   GG  A   A 
Sbjct: 86  LLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDE--ISTKIAYAAG---GGATAAEIAF 140

Query: 259 KELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLL---EQDNTDLGYD 315
           +           Q++ ++   +A++     +A NAG++   ++ KL     + N   G +
Sbjct: 141 RLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGIN 200

Query: 316 AAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIV 357
              GE  DMVK+G+I+P++V + A+  A   + ++   + ++
Sbjct: 201 VFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242

>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score = 74.0 bits (182), Expect = 3e-17
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 1  MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQ-KCELEDPLILVHE 59
          M+KVG EGVIT+ +  T   +LE+ E   +  G  +   +  +K++ +  + +    V E
Sbjct: 29 MDKVGNEGVITVEESNTFGLQLELTEVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEE 88

>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 18/91 (19%)

Query: 159 TISKDDTVILDGAGDKKSIEERCEQIR----SAIENSTSDYDKEKLQERLAKLSGGVAVL 214
            IS  D  I    GD   I E  +++       +E S +   + +L E         AV+
Sbjct: 13  AISAGDQSI----GDL--IAEAMDKVGNEGVITVEESNTFGLQLELTEV--------AVI 58

Query: 215 KIGGASEAEVGEKKDRVTDALNATKAAVEEG 245
           K G A+E E+ E+K R+ DA+   KAAVEEG
Sbjct: 59  KAGAATEVELKERKHRIEDAVRNAKAAVEEG 89

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 77.1 bits (189), Expect = 9e-17
 Identities = 35/205 (17%), Positives = 80/205 (39%), Gaps = 4/205 (1%)

Query: 157 KVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKI 216
            + ++ D   ILD    +    +   ++    +    D     +      L     +L  
Sbjct: 50  DIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQ 109

Query: 217 GGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTAN-FDQKIGV 275
                            A           ++P GG   +  A  L++ +      + + +
Sbjct: 110 NIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAI 169

Query: 276 QIIQNALKTPVHTIAANAGVEGAVVVGKLLEQ---DNTDLGYDAAKGEYVDMVKSGIIDP 332
           +   +ALK    T+A NAG++   ++ K++ +       +G D  +G+  DM++ GII+P
Sbjct: 170 ENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEP 229

Query: 333 LKVIRTALVDAASVSSLMTTTEAIV 357
           L+V + A+  A+  + ++   + ++
Sbjct: 230 LRVKKQAIKSASEAAIMILRIDDVI 254

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 11  TIHDGKTLYNELEVVEGMKLD---RGYISPYFITNQKNQKCELEDPLILVHEKKIS 63
           + H  + L   ++V EG   D   +G I P  +  Q  +       +IL  +  I+
Sbjct: 200 SEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIA 255

>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Thermus thermophilus [TaxId: 274]

 Score = 60.9 bits (148), Expect = 1e-12
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 1  MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPL 54
          MEKVGKEG+IT+ + K+L  EL+ V         +     T  K +K   ED L
Sbjct: 27 MEKVGKEGIITVEESKSLETELKFVGVA---VIRVGAATETELKEKKHRFEDAL 77

>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 210 GVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEE 244
           GVAV+++G A+E E+ EKK R  DALNAT+AAVEE
Sbjct: 52  GVAVIRVGAATETELKEKKHRFEDALNATRAAVEE 86

>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.2 bits (143), Expect = 7e-12
 Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 3/87 (3%)

Query: 159 TISK-DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIG 217
           TIS   ++ I  G    ++++    +    +E +     + ++ ER+AKL+GGVAV+++G
Sbjct: 13  TISANGESFI--GQQIAEAMQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRVG 70

Query: 218 GASEAEVGEKKDRVTDALNATKAAVEE 244
           G +E EV E+KDRV DALNAT+AAV+E
Sbjct: 71  GMTEIEVKERKDRVDDALNATRAAVQE 97

>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 1  MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQ-----KNQKCELEDPL 54
          M++VG EGVIT+ + K +  E+EVVE +    G ++   +        K +K  ++D L
Sbjct: 30 MQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDAL 88

>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Escherichia coli [TaxId: 562]

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 4/74 (5%)

Query: 175 KSIEERCEQI----RSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDR 230
           K I E  +++       +E+ T   D+  + ER+AKL+GGVAV+K+G A+E E+ EKK R
Sbjct: 24  KLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATEVEMKEKKAR 83

Query: 231 VTDALNATKAAVEE 244
           V DAL+AT+AAVEE
Sbjct: 84  VEDALHATRAAVEE 97

>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Escherichia coli [TaxId: 562]

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 1  MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITN-----QKNQKCELEDPL 54
          M+KVGKEGVIT+ DG  L +EL+VVE +    G ++   +        K +K  +ED L
Sbjct: 30 MDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATEVEMKEKKARVEDAL 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	382
d1kida_	193	GroEL, A domain {Escherichia coli [TaxId: 562]}	100.0
d1sjpa2	184	GroEL, A domain {Mycobacterium tuberculosis, GroEL	100.0
d1ioka2	176	GroEL, A domain {Paracoccus denitrificans [TaxId:	100.0
d1srva_	145	GroEL, A domain {Thermus thermophilus [TaxId: 274]	99.98
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	99.94
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	99.91
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	99.9
d1gmla_	168	Thermosome, A-domain {Mouse (Mus musculus), gamma	99.88
d1a6db2	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	99.85
d1q3qa2	153	Thermosome, A-domain {Archaeon Thermococcus sp. ks	99.84
d1ioka1	252	GroEL, E domain {Paracoccus denitrificans [TaxId:	99.84
d1assa_	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	99.84
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	99.84
d1sjpa1	180	GroEL, E domain {Mycobacterium tuberculosis, GroEL	99.83
d1kp8a1	252	GroEL, E domain {Escherichia coli [TaxId: 562]}	99.68
d1sjpa3	89	GroEL, I domain {Mycobacterium tuberculosis, GroEL	98.82
d1we3a3	86	GroEL, I domain {Thermus thermophilus [TaxId: 274]	98.28
d1kp8a3	97	GroEL, I domain {Escherichia coli [TaxId: 562]}	97.58
d1ioka3	97	GroEL, I domain {Paracoccus denitrificans [TaxId:	97.43
d1ioka3	97	GroEL, I domain {Paracoccus denitrificans [TaxId:	97.11
d1kp8a3	97	GroEL, I domain {Escherichia coli [TaxId: 562]}	96.22
d1q3qa3	107	Thermosome, I domain {Archaeon Thermococcus sp. ks	96.16
d1a6db3	107	Thermosome, I domain {Archaeon Thermoplasma acidop	95.75
d1a6da3	105	Thermosome, I domain {Archaeon Thermoplasma acidop	95.24

>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.2e-41  Score=299.04  Aligned_cols=189  Identities=57%  Similarity=0.921  Sum_probs=184.8

Q ss_pred             EEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccc
Q 016809           23 EVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKL  102 (382)
Q Consensus        23 ~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~  102 (382)
                      ++.+|+.|++||.||||+|+.+++..+++||+||++|.+|+++++++|+|+.+.+.+.||||++++|+++||+.|+.|+.
T Consensus         5 ~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~   84 (193)
T d1kida_           5 RGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM   84 (193)
T ss_dssp             SCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHH
T ss_pred             cccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEecceEEEEcCCCChhhHHHHHH
Q 016809          103 RAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCE  182 (382)
Q Consensus       103 ~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~  182 (382)
                      +|.++|||||+|+||+.+++.|+|||.+|||++++.+.+.++++++.++||+|+++.+++++|+++.+.++++.++.|++
T Consensus        85 kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri~  164 (193)
T d1kida_          85 RGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVA  164 (193)
T ss_dssp             TTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred             ccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhhhcCCe
Q 016809          183 QIRSAIENSTSDYDKEKLQERLAKLSGGV  211 (382)
Q Consensus       183 ~l~~~~~~~~s~~~~~~l~~rl~~l~g~~  211 (382)
                      +|+.+++.+.+++++++|++|+++|+|++
T Consensus       165 ~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         165 QIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999864

>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=100.00  E-value=1.7e-39  Score=288.44  Aligned_cols=184  Identities=54%  Similarity=0.917  Sum_probs=180.8

Q ss_pred             eEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCc
Q 016809           27 GMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGI  106 (382)
Q Consensus        27 G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~  106 (382)
                      |+.|++||.+|||+|+.+++..+++||+||++|.+|+++++++|+|+.+.+.+.||||++++|+++||+.|+.|+.+|.+
T Consensus         1 G~~~d~Gy~Sp~Fvt~~~~~~~~~~~p~ili~d~ki~~~~~i~p~Le~~~~~~rPLlIIA~di~~~aL~~Lv~N~~~g~l   80 (184)
T d1sjpa2           1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTF   80 (184)
T ss_dssp             EEEESCCBSCGGGCSBTTTTBEEEESCEEEEESSCBCCSTTTHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHTTSS
T ss_pred             CCccCcCccCcccccCCCCCEEEecCCEEEEecCccCcHHHHHHHHHHhhccCCcEEEEcchhhHHHHHHHHHHHhcCch
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEecceEEEEcCCCChhhHHHHHHHHHH
Q 016809          107 KVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRS  186 (382)
Q Consensus       107 ~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~~  186 (382)
                      +|||||+|+||+.+++.|+|||.+|||++++.+.+.++++++.++||+|+++.+++++|+++++.++++.++.|+++|+.
T Consensus        81 ~v~aVkaPgfG~~r~~~L~DlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~~~g~~~~I~~Ri~~Lk~  160 (184)
T d1sjpa2          81 KSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQ  160 (184)
T ss_dssp             CCEEEECSSCHHHHHHHHHHHHHHHTCCEEBTTTTBCSSSCCTTTSEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             heecccCCCCCcchHHHHHHHHHHhCCEEecccccccccccchhhCCeeeEEEEecCceEEecCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHHHhhhcCC
Q 016809          187 AIENSTSDYDKEKLQERLAKLSGG  210 (382)
Q Consensus       187 ~~~~~~s~~~~~~l~~rl~~l~g~  210 (382)
                      +++.+.+++++++|++||++|+|+
T Consensus       161 ~l~~~~~~~e~~~L~eRLAkLsGG  184 (184)
T d1sjpa2         161 EIENSDSDYDREKLQERLAKLAGG  184 (184)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999975

>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=1.5e-37  Score=273.62  Aligned_cols=176  Identities=63%  Similarity=1.009  Sum_probs=130.3

Q ss_pred             EeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCC
Q 016809           26 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG  105 (382)
Q Consensus        26 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~  105 (382)
                      +|+.|++||.||||+|+.+++..+++||+||++|.+|+++++++|+|+++.+.+.||||++++|+++||+.|+.|+++|.
T Consensus         1 EG~~~d~Gy~SpyFvtd~~~~~~~l~np~ILi~d~kI~~~~~i~p~Le~~~~~~~PLlIIA~di~~~aL~~Lv~N~~~g~   80 (176)
T d1ioka2           1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGG   80 (176)
T ss_dssp             CCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC-----------CCCCEEEESCBC---------------
T ss_pred             CCcccccCccCccceeCCcCCEEEeeCcEEEEEccccCcHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHHHhcCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 016809          106 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR  185 (382)
Q Consensus       106 ~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~  185 (382)
                      ++|||||+|+||+.+++.|+|||.+|||++++.+.+.++++++.++||+|+++.+++++|+++++.++++.++.|+++|+
T Consensus        81 l~v~aVkaP~fG~~r~~~LeDlA~~tGa~vi~~~~g~~l~~~~~~~LG~a~kv~vtk~~T~ii~g~g~~~~i~~Ri~~Lk  160 (176)
T d1ioka2          81 LKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIR  160 (176)
T ss_dssp             --CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEECSSCEEEESCCCCHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHhhCCEEEecccCCChhhCCHHHCceeeEEEEecCceEEEcCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHH
Q 016809          186 SAIENSTSDYDKEKLQ  201 (382)
Q Consensus       186 ~~~~~~~s~~~~~~l~  201 (382)
                      .+++.+.++|+|++|+
T Consensus       161 ~~i~~~~s~~~rekLq  176 (176)
T d1ioka2         161 QQIEETTSDYDREKLQ  176 (176)
T ss_dssp             HHHTTCCCSSHHHHHH
T ss_pred             HHHHHcCCHHHHHhhC
Confidence            9999999999999884

>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=1.1e-32  Score=234.45  Aligned_cols=144  Identities=52%  Similarity=0.898  Sum_probs=141.6

Q ss_pred             eEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCc
Q 016809           27 GMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGI  106 (382)
Q Consensus        27 G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~  106 (382)
                      |+.|++||.||||+++.+++..+++||+||++|.+|+++++++|+|+.+.+.++||||++++|+++||+.|+.|+++|.+
T Consensus         1 G~~~d~Gy~Sp~Fvtd~~~~~~~l~~p~ILi~d~kI~~~~~ilp~Le~~~~~~rPLlIIA~di~~eaL~~Lv~N~~~g~l   80 (145)
T d1srva_           1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTL   80 (145)
T ss_dssp             CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSC
T ss_pred             CCccccCccCCccccCcccCEEEecCceeeecccccccHHHHHHHHHHHHHhCCcEEEEeCccCHHHHHHHHHHHhcCce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEecceEEEEcC
Q 016809          107 KVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDG  170 (382)
Q Consensus       107 ~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~~~~~~~~~  170 (382)
                      ++||||+|+||+.+++.|+|||.+||+++++.+.+.++++++.++||+|+++++++++|++++|
T Consensus        81 ~v~aVkaP~fG~~r~~~L~DlAi~tGa~v~~~~~g~~l~~~~~~~LGsa~kv~vtkd~T~ii~G  144 (145)
T d1srva_          81 SVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGG  144 (145)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EEEEEeCCCccHHHHHHHhhhhhhhCCEeeccccCcccccCCHHHCCcccEEEEeCCccEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999986

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.94  E-value=8.4e-28  Score=222.28  Aligned_cols=153  Identities=20%  Similarity=0.289  Sum_probs=136.7

Q ss_pred             HHHHHHHhhhcCCeEEEEecCCchh-HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHH
Q 016809          198 EKLQERLAKLSGGVAVLKIGGASEA-EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIG  274 (382)
Q Consensus       198 ~~l~~rl~~l~g~~~TI~lrG~t~~-~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~  274 (382)
                      +.+++++..+.        +|-+.. +.+-.++.++++++.++.+.++. ++||||++|+++|..++.++.+ ++++|++
T Consensus        85 ~ll~~~~~~i~--------~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~ggGa~e~~~a~~l~~~a~~~~g~~q~~  156 (243)
T d1a6db1          85 GLLQQAQGLIN--------QNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLA  156 (243)
T ss_dssp             HHHHHHHHHHH--------TTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEEETTTHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCchhHHHHHHHhhhhhccCCHHHHH
Confidence            55666665543        355544 45568888889999999888887 9999999999999999999887 8899999


Q ss_pred             HHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhh
Q 016809          275 VQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMT  351 (382)
Q Consensus       275 ~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL  351 (382)
                      +++|++||+.||++|++|||+|+.+++.+|+..|   +.++|+|+.+|++.||.+.|||||+.||+++|+.|+|+|++||
T Consensus       157 i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL  236 (243)
T d1a6db1         157 IEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMIL  236 (243)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998876   6789999999999999999999999999999999999999999


Q ss_pred             chhhhhc
Q 016809          352 TTEAIVV  358 (382)
Q Consensus       352 ~id~iI~  358 (382)
                      |||+||.
T Consensus       237 ~iD~iis  243 (243)
T d1a6db1         237 RIDDVIA  243 (243)
T ss_dssp             HEEEEEC
T ss_pred             HHHHhcC
Confidence            9999874

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.91  E-value=5.7e-25  Score=203.54  Aligned_cols=137  Identities=23%  Similarity=0.332  Sum_probs=127.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016809          221 EAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV  299 (382)
Q Consensus       221 ~~~l~E~~r~l~dal~~~~~a~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~  299 (382)
                      ..+.+..+.+++++++.++...+.+++||||+.|++++..|..++.+ .+.+|+++++|++||+.||++|++|+|+|+.+
T Consensus       105 ~~i~~g~~~a~~~a~~~L~~~a~~~~v~g~ga~e~~l~~~l~~~a~~~~g~eq~a~~~~a~Ale~ip~~laeNaG~D~i~  184 (245)
T d1a6da1         105 TVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPIN  184 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCEECEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHhhccceeecCchhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhhhccCCCCchh
Confidence            34456678888999999988877789999999999999999999888 78999999999999999999999999999999


Q ss_pred             HHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhh
Q 016809          300 VVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIV  357 (382)
Q Consensus       300 vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI  357 (382)
                      ++.+++..|   +.++|+|+.+|.+.||.+.|||||+.+|.++|+.|+|+|++|||||+||
T Consensus       185 iv~~l~~~~~~~~~~~Gv~~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii  245 (245)
T d1a6da1         185 TLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI  245 (245)
T ss_dssp             HHHHHHHHHHTTCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred             hhhhhhcccccCCceeeEEccCCeEeehHhcCccccHHHHHHHHHHHHHHHHHHHhhceeC
Confidence            999998876   5789999999999999999999999999999999999999999999986

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=2.4e-24  Score=200.45  Aligned_cols=197  Identities=38%  Similarity=0.551  Sum_probs=160.7

Q ss_pred             EEEecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChH-----------HHHHHHHHHhhhcCCeEEEEecCCchhHHHH
Q 016809          158 VTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDY-----------DKEKLQERLAKLSGGVAVLKIGGASEAEVGE  226 (382)
Q Consensus       158 v~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~-----------~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E  226 (382)
                      ..++++..++......++..+.+...+-.++....+++           .++.+++.+..+       .-+.....++++
T Consensus        45 ~~itkdg~ti~~~i~l~d~~e~~~a~~~~~~~~~~~~~~gDgttt~~vl~~~~l~~~~~~i-------~~G~~~~~i~~g  117 (255)
T d1we3a1          45 PTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNV-------AAGANPLALKRG  117 (255)
T ss_dssp             CEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH-------HTTCCHHHHHHH
T ss_pred             ceEecchhhhhhhccccchhhhhHHHHHHHhhhhhHHHhhcchhHHHHHHHHHHHhhhhHH-------hcCCccchhhhh
Confidence            35666666666555545556677777666655544433           223344433322       224456788899


Q ss_pred             HHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHH
Q 016809          227 KKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKL  304 (382)
Q Consensus       227 ~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l  304 (382)
                      .++++++|+++++...+.. ++||||+++++++..++.+... ++.+++++++|++||+.||+++++|+|+++..+....
T Consensus       118 ~~~a~~~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~~~~~~~~g~~~~g~~iva~Al~~~~~~~~~nag~~~~~~~~~~  197 (255)
T d1we3a1         118 IEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQI  197 (255)
T ss_dssp             HHHHHHHHHHHHHHTCBCCCEEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHhhhcceeccchhhhhhhhhhhHhhccCCChHHHHHHHHHHHHHhhhHHHHHhhcccccceeeeee
Confidence            9999999999999977775 9999999999999999988777 8899999999999999999999999999999888887


Q ss_pred             HhcC-CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016809          305 LEQD-NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP  361 (382)
Q Consensus       305 ~~~~-~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~  361 (382)
                      ...+ +.++|+|..+|++.||++.|||||+.|+.++++.|++++.+||++|++|.++|
T Consensus       198 ~~~~~~~~~g~d~~~g~~~D~~e~Giidp~~V~~~a~~~A~~~a~~iL~~d~~I~~~p  255 (255)
T d1we3a1         198 LAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKP  255 (255)
T ss_dssp             HHCCSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECS
T ss_pred             eecccCCceeEEeeccEEeehhhcCCcCchHhhHHHHHHHHHHhchHhhcchhhhcCC
Confidence            7665 67899999999999999999999999999999999999999999999999876

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=99.88  E-value=2e-22  Score=175.86  Aligned_cols=131  Identities=17%  Similarity=0.295  Sum_probs=111.2

Q ss_pred             eeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CHHH-----------HHHHHHHH
Q 016809           20 NELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTA-----------VVRVLELA   75 (382)
Q Consensus        20 d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~~~-----------l~~~le~i   75 (382)
                      || ++++|++|++.+.++.       |++.++||+|++++++++             ++++           +.+++++|
T Consensus         1 DS-~li~Gvvi~k~~~~~~-------m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I   72 (168)
T d1gmla_           1 DS-CVLRGVMINKDVTHPR-------MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDI   72 (168)
T ss_dssp             CC-SEEEEEEESCCCSSTT-------SCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc-EEEEEEEEecccCCcC-------CccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 7999999999999875       789999999999999854             3322           34668899


Q ss_pred             HHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCce-
Q 016809           76 LKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGT-  154 (382)
Q Consensus        76 ~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~-  154 (382)
                      .+.|++||+++++|++.++++|.+++      |++++     ++++++|++||++|||+++++     ++++++++||+ 
T Consensus        73 ~~~g~~vv~~~~~I~~~a~~~L~~~g------I~~~~-----rv~~~dl~ria~~tga~iv~s-----i~~l~~~~lG~~  136 (168)
T d1gmla_          73 IQLKPDVVITEKGISDLAQHYLMRAN------VTAIR-----RVRKTDNNRIARACGARIVSR-----PEELREDDVGTG  136 (168)
T ss_dssp             HTTCCSEEEESSCBCHHHHHHHHHTT------CEEEC-----CCCHHHHHHHHHHHCCCEESC-----GGGCCGGGSBCC
T ss_pred             HhcCCceEEEcCCCCHHHHHHHHHCC------Ceeec-----cCCHHHHHHHHHHHCCceeCc-----hhhcCccccccc
Confidence            99999999999999999999999999      68888     556999999999999999999     99999999999 


Q ss_pred             eeEEEEe---cceEEEEcCCCCh
Q 016809          155 CKKVTIS---KDDTVILDGAGDK  174 (382)
Q Consensus       155 ~~~v~i~---~~~~~~~~~~~~~  174 (382)
                      |+.+++.   ++++++|++|+++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~  159 (168)
T d1gmla_         137 AGLLEIKKIGDEYFTFITDCKDP  159 (168)
T ss_dssp             EEEEEEEEETTEEEEEEEEESST
T ss_pred             ccEEEEEEECCeEEEEEEecCCC
Confidence            4655543   4689999998764

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.85  E-value=4.3e-21  Score=164.62  Aligned_cols=125  Identities=17%  Similarity=0.309  Sum_probs=110.8

Q ss_pred             eEEEeecccCcccccccccCceeecCceEEEeccCC-------------CCHHH-----------HHHHHHHHHHcCCCE
Q 016809           27 GMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA-----------VVRVLELALKRQRPL   82 (382)
Q Consensus        27 G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I-------------~~~~~-----------l~~~le~i~~~~~~l   82 (382)
                      |++|++++.|+.       ||+.++||+|+++++++             +++++           +..++++|++.|++|
T Consensus         1 Gvv~~k~~~~~~-------mpk~i~~~kIlll~~~Le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nv   73 (152)
T d1a6db2           1 GIIVDKEKVHPG-------MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANV   73 (152)
T ss_dssp             EEEESCCCSSTT-------SCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CEEEeccCCCCC-------CCCcccCCcEEEEecccccccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCce
Confidence            899999999885       89999999999999973             35444           346678899999999


Q ss_pred             EEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe-
Q 016809           83 LIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS-  161 (382)
Q Consensus        83 vI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~-  161 (382)
                      ||++++|++.++++|.+++      |++++     ++++++|++||++|||+++++     ++++++++||+|+.|++. 
T Consensus        74 v~~~k~Idd~a~~~l~k~g------I~~v~-----~v~~~dl~rla~~tGa~iv~s-----~~~l~~~~LG~~~~v~~~~  137 (152)
T d1a6db2          74 VITQKGIDDMAQHYLSRAG------IYAVR-----RVKKSDMDKLAKATGASIVST-----IDEISSSDLGTAERVEQVK  137 (152)
T ss_dssp             EEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHTCCEESC-----GGGCCGGGCEEEEEEEEEE
T ss_pred             EEecCCCcHHHHHHHHHcC------cchhc-----cCCHHHHHHHHHHhCCeeecc-----hhhCCcccCcCceEEEEEE
Confidence            9999999999999999998      68887     556999999999999999999     999999999999999964 


Q ss_pred             --cceEEEEcCCCCh
Q 016809          162 --KDDTVILDGAGDK  174 (382)
Q Consensus       162 --~~~~~~~~~~~~~  174 (382)
                        +++++||+||++|
T Consensus       138 ~g~~~~~~~~gc~np  152 (152)
T d1a6db2         138 VGEDYMTFVTGCKNP  152 (152)
T ss_dssp             ETTEEEEEEEEESSS
T ss_pred             ECCEEEEEEeCCCCC
Confidence              5789999999875

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.84  E-value=7.4e-21  Score=163.34  Aligned_cols=126  Identities=16%  Similarity=0.323  Sum_probs=111.8

Q ss_pred             EeEEEeecccCcccccccccCceeecCceEEEeccCC-------------CCHHHH-----------HHHHHHHHHcCCC
Q 016809           26 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTAV-----------VRVLELALKRQRP   81 (382)
Q Consensus        26 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I-------------~~~~~l-----------~~~le~i~~~~~~   81 (382)
                      .|++|++.+.|+.       ||+.++||+|+++++++             ++++++           ..++++|++.|+|
T Consensus         1 kGvv~~k~~~~~~-------mp~~i~n~kIlll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~n   73 (153)
T d1q3qa2           1 RGVVIDKEVVHPR-------MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGAN   73 (153)
T ss_dssp             SSEEESCCCSSTT-------SCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CeEEEeCCCCCcc-------CCcccCCccEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            4899999999874       89999999999999985             355554           3567889999999


Q ss_pred             EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016809           82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS  161 (382)
Q Consensus        82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~  161 (382)
                      ||+++++|++.++++|.+++      |+|++     ++++++|++||++|||+++++     ++++++++||+|+.+++.
T Consensus        74 vvl~~k~I~~~a~~~l~~~g------I~~v~-----~v~~~dl~ria~~tGa~iv~s-----i~~l~~~~LG~~~~~~~~  137 (153)
T d1q3qa2          74 VVFVQKGIDDLAQHYLAKYG------IMAVR-----RVKKSDMEKLAKATGAKIVTN-----VKDLTPEDLGYAEVVEER  137 (153)
T ss_dssp             EEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHCCCCBSS-----GGGCCGGGCEEESEEEEE
T ss_pred             ceeecCCCcHHHHHHHHHcC------Cceec-----cCCHHHHHHHHHhhCCEEecc-----hhhCCcccCeeeEEEEEE
Confidence            99999999999999999999      68887     557999999999999999999     999999999999999864


Q ss_pred             ---cceEEEEcCCCCh
Q 016809          162 ---KDDTVILDGAGDK  174 (382)
Q Consensus       162 ---~~~~~~~~~~~~~  174 (382)
                         ++++++|+||++|
T Consensus       138 ~~g~~~~~~~~gc~~P  153 (153)
T d1q3qa2         138 KLAGENMIFVEGCKNP  153 (153)
T ss_dssp             EETTEEEEEEECCSSC
T ss_pred             EECCeeEEEEeCCCCC
Confidence               5799999999875

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.3e-21  Score=181.51  Aligned_cols=239  Identities=37%  Similarity=0.529  Sum_probs=184.6

Q ss_pred             EEecCCCC-cchhhhHHHHHHHHCCeEeccCCCCccccCC-cCCCceeeEEEEecceEEEEcCCCChhhHHHHHHHHHHH
Q 016809          110 AIKAPGFG-ENRKANMQDLAVLTGGDLITEELGMDLEKVN-LDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSA  187 (382)
Q Consensus       110 av~~~~~~-~~~~~~le~la~~tG~~ii~~~~~~~l~~l~-~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~~~  187 (382)
                      |+|.+.|| +-|+..|+.+..++++  +..+.|..-.+.- .+..|.   ..++++.+++..+...++.++.++..+..+
T Consensus         1 a~k~~~fg~~ar~~~l~gi~~l~~~--v~~tlGp~G~~v~i~~~~g~---~~ITkDg~TI~~~i~~~~~~e~~~a~l~~~   75 (252)
T d1ioka1           1 AAKEVKFNSDARDRMLKGVNILADA--VKVTLGPKGRNVVIDKSFGA---PRITKDGVSVAKEIELSDKFENMGAQMVRE   75 (252)
T ss_dssp             CCEEEEEHHHHHHHHHHHHHHHHHH--HGGGCSTTCCEEEECCSSSS---CEEECCHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHh--HHhccCCCcCeEEEEcCCCC---ceEEcCCceeeeccccCChHHHHHHHHHHH
Confidence            35667888 4478899999998865  3333222222211 123343   456777777777776777788888888777


Q ss_pred             HhhcCChH--H---------HHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcCccccchHHHHH
Q 016809          188 IENSTSDY--D---------KEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLY  256 (382)
Q Consensus       188 ~~~~~s~~--~---------~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~gvvpGGGa~e~~  256 (382)
                      .....+++  +         .+.+++.+..+        -.|.+..++.+-.++..+++.....++..|++||||.+.++
T Consensus        76 ~a~~~~~~~gDgttt~~vla~~ll~~g~~~l--------~~G~~p~~i~~g~~~a~~~v~~~l~~~a~~i~~~g~~al~~  147 (252)
T d1ioka1          76 VASRTNDEAGDGTTTATVLAQAIVREGLKAV--------AAGMNPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQ  147 (252)
T ss_dssp             HHHHGGGGCSTHHHHHHHHHHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHHHHHHHHTTCBCEEETTTHHHHH
T ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHHHHHH--------HcCCCcchhhhhHHHHHHHHHHHHHHhcCCCCCchHHhhHH
Confidence            65544322  1         22344444333        24778877777777777777777777777999999999999


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCccccccccCccccchhH
Q 016809          257 AAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVI  336 (382)
Q Consensus       257 ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk  336 (382)
                      ++..+......++.+++++.++.+|++.|.+++++|+|.|+..++.+.....++++|||..+++++||++.||+||+.|+
T Consensus       148 ~~~~l~~~~~~~~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~~~~~~~~~~g~~~~~~~~g~~~~~GiidP~kVt  227 (252)
T d1ioka1         148 GAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVV  227 (252)
T ss_dssp             HGGGGGSCCCSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCCSTTEEEETTTTEEEEHHHHTCEEEHHHH
T ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEeecccCcCCEEEEceeeeEeeeecccccCcHHHH
Confidence            99877655444678899999999999999999999999999999999888777899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhchhhhhccCC
Q 016809          337 RTALVDAASVSSLMTTTEAIVVELP  361 (382)
Q Consensus       337 ~~~l~~A~e~a~~iL~id~iI~~~~  361 (382)
                      .++|.+|+++|.+||++|.+|...|
T Consensus       228 ~~al~~A~sva~~lltte~~i~~~p  252 (252)
T d1ioka1         228 RTALEDAASVAGLLITTEAMIAEKP  252 (252)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEEECC
T ss_pred             HHHHHHHHhhhhHHHhhceeeecCC
Confidence            9999999999999999999998766

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.84  E-value=6.6e-21  Score=163.47  Aligned_cols=125  Identities=17%  Similarity=0.316  Sum_probs=110.6

Q ss_pred             EEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CHHH-----------HHHHHHHHHHcCC
Q 016809           25 VEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTA-----------VVRVLELALKRQR   80 (382)
Q Consensus        25 ~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~~~-----------l~~~le~i~~~~~   80 (382)
                      ++|+++++.+.|+.       ||+.++||+|++++++++             ++++           +..++++|.++|+
T Consensus         1 i~Gvv~~k~~~~~~-------mp~~i~~~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~   73 (152)
T d1assa_           1 MSGIVIDKEKVHSK-------MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA   73 (152)
T ss_dssp             CCCEEESCCCSCTT-------SCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEeCccCCCC-------CCccccCceEEEEecccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            47999999999875       899999999999999854             4433           3466789999999


Q ss_pred             CEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEE
Q 016809           81 PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTI  160 (382)
Q Consensus        81 ~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i  160 (382)
                      ++|+++++|++.++++|.+++      |.+++     ++++++|++||++|||+++++     ++++++++||+|++|++
T Consensus        74 nvvl~~~~I~~~a~~~l~k~g------I~~v~-----~v~~~dl~ria~atGa~iv~s-----~~~l~~~~LG~~~~v~~  137 (152)
T d1assa_          74 NVVLCQKGIDDVAQHYLAKEG------IYAVR-----RVKKSDMEKLAKATGAKIVTD-----LDDLTPSVLGEAETVEE  137 (152)
T ss_dssp             SEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHTCCCBSS-----TTSCCTTSCEEEEEEEE
T ss_pred             ceEEEeccccHHHHHHHHHcC------Ccccc-----CCCHHHHHHHHHHhCCceeCC-----cccCCcccCeeeeEEEE
Confidence            999999999999999999999      68887     567999999999999999999     99999999999999996


Q ss_pred             e---cceEEEEcCCC
Q 016809          161 S---KDDTVILDGAG  172 (382)
Q Consensus       161 ~---~~~~~~~~~~~  172 (382)
                      .   +++++||+||+
T Consensus       138 ~~ig~~~~~~~~GCk  152 (152)
T d1assa_         138 RKIGDDRMTFVMGCK  152 (152)
T ss_dssp             EEETTEEEEEEESCC
T ss_pred             EEECCEEEEEEecCC
Confidence            4   57999999984

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.84  E-value=7.3e-21  Score=176.94  Aligned_cols=141  Identities=20%  Similarity=0.338  Sum_probs=130.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016809          220 SEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA  298 (382)
Q Consensus       220 t~~~l~E~~r~l~dal~~~~~a~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~  298 (382)
                      ...+.+..+.++++++..++......++||+|+.|+..+..+..++.. .+.+++++++|++||+.||++|++|+|+|+.
T Consensus       113 p~~i~~g~~~a~~~~~~~l~~~~~~~~~~~~g~~ei~~a~~l~~~a~~~~~~~~~a~~~~a~Al~~Ip~~la~N~G~d~i  192 (258)
T d1q3qa1         113 PSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTV  192 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHhhhcccchHHHHHHHHHHHhccchhhhhhhhcCCccc
Confidence            455668888888999999988877779999999999999999988777 7889999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccC
Q 016809          299 VVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL  360 (382)
Q Consensus       299 ~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~  360 (382)
                      +++.+++..|   +.++|+|+.+|.+.||.+.|||||+.+|.++++.|++++.+||+||++|+++
T Consensus       193 ~~v~~l~~~~~~~~~~~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~A~e~a~~IL~iD~iI~ak  257 (258)
T d1q3qa1         193 EMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAK  257 (258)
T ss_dssp             HHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             eehhhhhhhcccCCCceEEEEECCEEeEchHcCccccHHHHHHHHHHHHHHhCcceeEccEEeeC
Confidence            9999998765   6889999999999999999999999999999999999999999999999875

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=99.83  E-value=4e-21  Score=169.32  Aligned_cols=133  Identities=38%  Similarity=0.586  Sum_probs=116.7

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHhhcC--ccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcC
Q 016809          217 GGASEAEVGEKKDRVTDALNATKAAVEEG--IVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAG  294 (382)
Q Consensus       217 rG~t~~~l~E~~r~l~dal~~~~~a~~~g--vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG  294 (382)
                      .|.+..   +.++.+++|+..+...+++.  .+||||..+++++..+.... .++.+++++++|++||+.|+++|++|||
T Consensus        46 ~g~~p~---~i~~Gi~~A~~~v~~~L~~~a~~v~g~~~~~l~a~~al~~~~-~~~~e~~g~~i~~~Al~~p~~~I~~NaG  121 (180)
T d1sjpa1          46 AGANPL---GLKRGIEKAVEKVTETLLKGAKIVAGGGVTLLQAAPTLDELK-LEGDEATGANIVKVALEAPLKQIAFNSG  121 (180)
T ss_dssp             TTCCHH---HHHHHHHHHHHHHHHHHHHTCBEEETTTTTTTTTGGGGGGSC-CCTHHHHHHHHHHHHTTHHHHHHHHTTT
T ss_pred             CCCChH---HHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            444543   67889999999998888887  89999999988776654321 2678999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchh
Q 016809          295 VEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTE  354 (382)
Q Consensus       295 ~d~~~vi~~l~~~~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id  354 (382)
                      +|+..++.++++. ++++|||..+++++||++.||+||+.|++++|++|+++|++||+++
T Consensus       122 ~~~~~v~~~~~~~-~~~~G~d~~~~~~~dm~e~GIiDP~kV~~~AL~~A~s~a~~~ltte  180 (180)
T d1sjpa1         122 LEPGVVAEKVRNL-PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTE  180 (180)
T ss_dssp             SCHHHHHHHHHTS-CTTEECCTTTCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             CCchhhhhhhhcc-ccccCccccccccccHHHcCCcCcHHHHHHHHHhHHHHHHHHHhCC
Confidence            9999999998765 5899999999999999999999999999999999999999999975

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.1e-17  Score=152.81  Aligned_cols=235  Identities=31%  Similarity=0.480  Sum_probs=165.3

Q ss_pred             EecCCCC-cchhhhHHHHHHHHCCeEeccCCCCccccC-CcCCCceeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHH
Q 016809          111 IKAPGFG-ENRKANMQDLAVLTGGDLITEELGMDLEKV-NLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAI  188 (382)
Q Consensus       111 v~~~~~~-~~~~~~le~la~~tG~~ii~~~~~~~l~~l-~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~  188 (382)
                      .|.|.|| +.|+..|++++.++++  +....|..-.+. -.+..|.   ..++++.+++.......+.++.+...+-.++
T Consensus         2 ak~~~fg~dar~~ll~gi~~la~~--v~~TLGP~g~~~~i~~~~g~---~~iTkDg~ti~~~i~~~d~~e~~~a~~~~~~   76 (252)
T d1kp8a1           2 AKDVKFGNDAGVKMLRGVNVLADA--VKVTLGPKGRNVVLDKSFGA---PTITKDGVSVAREIELEDKFENMGAQMVKEV   76 (252)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHHHHH--HHTTCSTTCCEEEECCSSSS---CEEECCHHHHHHHCCCSSHHHHHHHHHHHHH
T ss_pred             CccccCCHHHHHHHHHHHHHHHhh--HHhccCCCCCeEEEEcCCCC---eEEEecchheeecccccchHHHHHHHHHHHH
Confidence            5677899 6688999999999865  333322221111 1122333   4456666666554434445555555554443


Q ss_pred             hhcCChH-----------HHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHh---hcCccccchHHH
Q 016809          189 ENSTSDY-----------DKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAV---EEGIVPGGGVAL  254 (382)
Q Consensus       189 ~~~~s~~-----------~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~---~~gvvpGGGa~e  254 (382)
                      .....++           -.+.+++-+..+        -.|.+...+   ++.++.|...+...+   ..++.+|++...
T Consensus        77 a~~~~~~~GDgttt~~vla~~ll~~~~~~i--------~~G~~p~~i---~~gi~~a~~~v~~~L~~~s~~i~~~~~~~~  145 (252)
T d1kp8a1          77 ASKANDAAGDGTTTATVLAQAIITEGLKAV--------AAGMNPMDL---KRGIDKAVTVAVEELKALSVGVVAGGGVAL  145 (252)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHHH--------HTTCCHHHH---HHHHHHHHHHHHHHHHHHCBCEEETTTHHH
T ss_pred             HHhhhHHhccccchhHHHHHHHHHHHHHHH--------HcCCcchhh---hhhhhhHHHHHHHHHHhcceeeccCchhhh
Confidence            3322211           233344433322        345565443   444555555555444   447999999999


Q ss_pred             HHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCccccccccCccccch
Q 016809          255 LYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLK  334 (382)
Q Consensus       255 ~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i~d~~~~gI~Dp~~  334 (382)
                      ++++..+......++.++++..++.+||+.|.++++.|+|.++..++.++.. .+++.|||..++.++|+++.|++||+.
T Consensus       146 v~~~~~~~~~k~~n~d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~~~v~~-~~~~~g~~~~~~~~g~~~~~G~idP~~  224 (252)
T d1kp8a1         146 IRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG-GDGNYGYNAATEEYGNMIDMGILDPTK  224 (252)
T ss_dssp             HHHHHHTTTCCCSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHH-SCTTEEEETTTTEEEETTTTTCEEEHH
T ss_pred             hHHHHHhhhhcccCccHHHhHHHHHHHHHHHHHHHHHhhhhcccccceeeee-cCCCeeEEEEEEEEEEEEeeccCCcce
Confidence            9998776554444678999999999999999999999999999999998865 467899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhchhhhhccCCc
Q 016809          335 VIRTALVDAASVSSLMTTTEAIVVELPK  362 (382)
Q Consensus       335 vk~~~l~~A~e~a~~iL~id~iI~~~~~  362 (382)
                      |...+++.|...+.+||++|..|...|+
T Consensus       225 Vt~~al~~a~~~~~~iL~te~~i~~~pe  252 (252)
T d1kp8a1         225 VTRSALQYAASVAGLMITTECMVTDLPK  252 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEEEEEECCC
T ss_pred             eccHhhhhheeccceeEeecccccCCCC
Confidence            9999999999999999999999988774

>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=98.82  E-value=4.3e-11  Score=91.48  Aligned_cols=59  Identities=27%  Similarity=0.383  Sum_probs=53.5

Q ss_pred             CcccCCCceEEEEeCCccceeeEEEEeEEEeecccCccccccc-ccCceeecCceEEEec
Q 016809            1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQ-KNQKCELEDPLILVHE   59 (382)
Q Consensus         1 ~~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~-~~~~~~l~~p~Ill~d   59 (382)
                      +++||.+|+|+++.|.+.++++++++|+.|++||.+|||+++. .++...|+||+||++|
T Consensus        29 ~~kVG~dGvItvEe~~~~~t~le~veG~~~d~Gy~Sp~fvtd~k~r~e~~l~~p~ili~d   88 (89)
T d1sjpa3          29 MDKVGNEGVITVEESNTFGLQLELTEVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEE   88 (89)
T ss_dssp             HHHSCTTSCEEEEEESSSSEEEEEESEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCceEEEeccccceEEEEEEEEEecCCccCceEEcccHHhhHHHHhCceEeeec
Confidence            3689999999999999999999999999999999999999865 4566789999999876

>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.28  E-value=4.2e-08  Score=73.76  Aligned_cols=51  Identities=41%  Similarity=0.566  Sum_probs=46.3

Q ss_pred             CcccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCce
Q 016809            1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPL   54 (382)
Q Consensus         1 ~~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~   54 (382)
                      |++||++|+|+++.|.+.++++++++|+.|.   .+|||+++.++|.++++||.
T Consensus        27 ~~kVG~dGvItVEes~t~~t~levveG~~~~---~s~~fvtd~~~~~~elenpL   77 (86)
T d1we3a3          27 MEKVGKEGIITVEESKSLETELKFVGVAVIR---VGAATETELKEKKHRFEDAL   77 (86)
T ss_dssp             HHTTCTTSEEEEEECSSSSCEEEEECEEEEE---ECCSSHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCceEEEEecCCCCeEEEEEEeeecc---cceeeeeehhhcEEEEeCcH
Confidence            4689999999999999999999999999885   56789999999999999995

>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=1.7e-06  Score=66.67  Aligned_cols=45  Identities=42%  Similarity=0.589  Sum_probs=41.2

Q ss_pred             CcccCCCceEEEEeCCccceeeEEEEeEEEeecccCccccccccc
Q 016809            1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKN   45 (382)
Q Consensus         1 ~~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~   45 (382)
                      +++||.+|+|+++.|.+..+++++++|+.|++||.+|+|+++...
T Consensus        30 ~~~vg~dGvitvee~~~~~~~~~ivEG~~~d~G~vS~~fvt~~te   74 (97)
T d1kp8a3          30 MDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATE   74 (97)
T ss_dssp             HHHHCTTSEEEEECCSSSSCEEEEEHHHHHHHHCEEEEECCCSSH
T ss_pred             HHHhcccceEEEeccccchhHHHHHHHHHhhcCCccceeecCcch
Confidence            468999999999999999999999999999999999999876543

>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.43  E-value=2e-06  Score=66.15  Aligned_cols=46  Identities=33%  Similarity=0.460  Sum_probs=41.8

Q ss_pred             CcccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccC
Q 016809            1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQ   46 (382)
Q Consensus         1 ~~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~   46 (382)
                      +++||.+|+|+++.|.++++++++++|+.|++||.+|+|+++.+.+
T Consensus        30 ~~~Vg~~GvitvEe~~~~~t~~~ivEG~~~~~GyiS~~fv~~~t~~   75 (97)
T d1ioka3          30 MQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRVGGMTEI   75 (97)
T ss_dssp             HHHHCTTSCCCCEECSSSCCEEEEEHHHHTTSSCEEEEEECCSSHH
T ss_pred             HHHhCCCceEEeccccchhhhhhHhhhhhhhhccccccccCCCcee
Confidence            3679999999999999999999999999999999999998776544

>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.11  E-value=0.00036  Score=53.14  Aligned_cols=43  Identities=70%  Similarity=1.029  Sum_probs=39.6

Q ss_pred             HHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhc
Q 016809          202 ERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEE  244 (382)
Q Consensus       202 ~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~  244 (382)
                      +|+.+++|.++.+.+.++++.+++|++.+++|||+++|+|+++
T Consensus        55 EG~~~~~GyiS~~fv~~~t~~E~~ekk~~veDAl~a~raa~~e   97 (97)
T d1ioka3          55 ERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQE   97 (97)
T ss_dssp             HHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccccccCCCceeeeeeccceeecCHHHHHHHhcC
Confidence            5677789999999999999999999999999999999999863

>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0027  Score=48.18  Aligned_cols=43  Identities=70%  Similarity=0.961  Sum_probs=38.2

Q ss_pred             HHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhc
Q 016809          202 ERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEE  244 (382)
Q Consensus       202 ~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~  244 (382)
                      +|+..+.|.++.+.+.+.++.+++|.+.+++|+|+++|+|+++
T Consensus        55 EG~~~d~G~vS~~fvt~~te~E~~ekk~~veDaL~a~~aA~~e   97 (97)
T d1kp8a3          55 ERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEE   97 (97)
T ss_dssp             HHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCccceeecCcchhhhhhceeEEechHHHHHHHhcC
Confidence            3455667889999999999999999999999999999999863

>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=96.16  E-value=0.00013  Score=56.88  Aligned_cols=43  Identities=7%  Similarity=0.081  Sum_probs=36.2

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS   63 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~   63 (382)
                      |.+.+||+++|| ++++|++|++.   +       .||..++||+|+++|++++
T Consensus        57 i~K~~Ggsv~dS-~lv~G~vl~k~---~-------~mp~~i~n~ki~lld~~le   99 (107)
T d1q3qa3          57 FEKKAGEGVEES-ELVKAVTILIR---G-------GTEHVIDEVERALEDAVKV   99 (107)
T ss_dssp             EEEEEBSCGGGC-EEESSEEEEEE---E-------SSHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCChhhC-EEEccEEEEcc---C-------CCCcccCCcCEeeccCcHH
Confidence            466799999997 99999999873   3       3788899999999999754

>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=95.75  E-value=7.4e-05  Score=58.35  Aligned_cols=45  Identities=7%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             EEEEeCCccceeeEEEEeEEE-----eecccCcccccccccCceeecCceEEEeccCCC
Q 016809           10 ITIHDGKTLYNELEVVEGMKL-----DRGYISPYFITNQKNQKCELEDPLILVHEKKIS   63 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~-----~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~   63 (382)
                      |.+.+||+++|| ++++|+++     ++...++       +||+.++|| |+++||+++
T Consensus        56 I~k~~Ggs~~dS-~li~G~v~~~~~~~k~~~~~-------~Mpk~i~n~-I~lld~~LE  105 (107)
T d1a6db3          56 VVKKQGGAIDDT-QLINKAVSILVRGETEHVVD-------EMERSITDS-LHVVASALE  105 (107)
T ss_dssp             EEEEESSCGGGC-EEESSCEEEEEEESSHHHHH-------HHHHHHHHH-HHHHHHHHH
T ss_pred             EEeecCCChhhc-EEEeccceeeccCCceeccC-------CCCccccCc-EEEEecCCc
Confidence            456789999997 99999776     3444444       489999998 999998764

>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=95.24  E-value=0.00056  Score=52.93  Aligned_cols=42  Identities=2%  Similarity=0.083  Sum_probs=34.4

Q ss_pred             EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC
Q 016809           10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI   62 (382)
Q Consensus        10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I   62 (382)
                      |.+.+||++.|+ ++++|+++++   ++       .||..++||+|+++|+++
T Consensus        54 i~k~~Ggs~~dS-~lv~G~vl~k---~~-------~mp~~~~~~kialld~~~   95 (105)
T d1a6da3          54 VDKKNGGSVNDT-QFISAVSILI---RG-------GTDHVVSEVERALNDAIR   95 (105)
T ss_dssp             EEECCCSCSTTC-EEESCEEEEE---CC-------SSSTTHHHHHHHHHHHHH
T ss_pred             hhhccCCChhhe-eeeeccceec---cC-------CCCcccCCcCeeEecchh
Confidence            456799999997 9999999987   33       377889999999988864