Query 016810
Match_columns 382
No_of_seqs 180 out of 1421
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 2.2E-52 4.8E-57 401.1 25.6 210 97-346 30-243 (255)
2 PRK00145 putative inner membra 100.0 7.8E-52 1.7E-56 390.3 25.0 213 104-350 2-216 (223)
3 PRK01001 putative inner membra 100.0 1.2E-51 2.7E-56 435.5 25.1 244 100-368 547-794 (795)
4 PRK01318 membrane protein inse 100.0 2E-50 4.3E-55 420.4 24.7 209 100-351 298-512 (521)
5 PRK01622 OxaA-like protein pre 100.0 6.9E-50 1.5E-54 384.1 26.3 211 98-348 32-252 (256)
6 TIGR03592 yidC_oxa1_cterm memb 100.0 3.6E-49 7.9E-54 360.9 21.6 181 130-345 1-181 (181)
7 PRK02463 OxaA-like protein pre 100.0 1.6E-48 3.4E-53 382.9 25.4 208 101-349 34-253 (307)
8 PRK01315 putative inner membra 100.0 4.6E-48 1E-52 382.1 27.2 247 101-355 5-266 (329)
9 PF02096 60KD_IMP: 60Kd inner 100.0 6.1E-48 1.3E-52 355.3 20.9 193 130-347 2-197 (198)
10 PRK03449 putative inner membra 100.0 3E-47 6.5E-52 373.1 25.5 232 103-349 1-272 (304)
11 PRK02201 putative inner membra 100.0 3.1E-47 6.7E-52 379.4 24.3 222 100-346 100-341 (357)
12 COG0706 YidC Preprotein transl 100.0 1.7E-46 3.7E-51 370.0 23.9 215 100-350 84-300 (314)
13 PRK00247 putative inner membra 100.0 1E-43 2.2E-48 360.6 25.4 256 104-360 2-290 (429)
14 PRK02654 putative inner membra 100.0 6.7E-37 1.5E-41 299.6 23.8 114 100-220 2-119 (375)
15 KOG1239 Inner membrane protein 99.9 3.1E-23 6.8E-28 208.9 15.3 214 99-354 77-303 (372)
16 KOG1239 Inner membrane protein 98.9 5.1E-10 1.1E-14 113.5 4.4 248 100-353 4-255 (372)
17 COG1422 Predicted membrane pro 96.6 0.015 3.2E-07 54.6 9.2 90 130-221 45-143 (201)
18 COG1422 Predicted membrane pro 83.6 27 0.00059 33.1 12.5 86 133-222 52-148 (201)
19 PF01956 DUF106: Integral memb 82.7 5.6 0.00012 35.8 7.5 44 131-174 15-63 (168)
20 TIGR03593 yidC_nterm membrane 72.4 2.8 6.2E-05 42.2 2.7 23 100-122 343-365 (366)
21 cd02433 Nodulin-21_like_2 Nodu 69.9 6.9 0.00015 37.7 4.6 24 63-86 16-39 (234)
22 PF09973 DUF2208: Predicted me 65.7 40 0.00087 32.7 8.8 80 127-220 21-111 (233)
23 PF05280 FlhC: Flagellar trans 63.7 13 0.00027 34.5 4.8 37 183-219 38-85 (175)
24 cd02434 Nodulin-21_like_3 Nodu 60.1 12 0.00026 35.8 4.2 31 166-196 67-97 (225)
25 cd02432 Nodulin-21_like_1 Nodu 59.8 13 0.00029 35.4 4.4 24 173-196 79-102 (218)
26 COG1377 FlhB Flagellar biosynt 48.5 94 0.002 32.1 8.6 41 134-179 196-239 (363)
27 KOG1532 GTPase XAB1, interacts 48.1 75 0.0016 32.2 7.5 90 100-201 217-309 (366)
28 PF09958 DUF2192: Uncharacteri 47.4 33 0.00072 33.2 4.9 43 160-202 10-52 (231)
29 COG1333 ResB ResB protein requ 43.7 1.6E+02 0.0035 31.5 9.6 91 130-220 56-167 (478)
30 COG3105 Uncharacterized protei 39.5 1.4E+02 0.003 26.7 7.0 28 145-175 24-51 (138)
31 cd02435 CCC1 CCC1. CCC1: This 39.4 44 0.00095 32.4 4.4 26 171-196 90-116 (241)
32 KOG4075 Cytochrome c oxidase, 39.1 57 0.0012 30.1 4.8 61 158-218 49-123 (167)
33 PF05190 MutS_IV: MutS family 39.0 48 0.001 25.9 4.0 36 163-198 2-37 (92)
34 PRK09174 F0F1 ATP synthase sub 38.7 2.9E+02 0.0064 26.0 9.8 19 133-151 61-79 (204)
35 KOG3817 Uncharacterized conser 34.7 1.4E+02 0.0031 31.0 7.3 69 131-199 277-351 (452)
36 PF05752 Calici_MSP: Calicivir 34.1 91 0.002 28.8 5.3 44 152-195 22-65 (167)
37 TIGR02829 spore_III_AE stage I 31.7 6.1E+02 0.013 26.4 14.1 68 271-343 133-202 (381)
38 PF01988 VIT1: VIT family; In 30.9 3.7E+02 0.008 25.1 9.1 31 166-196 66-96 (213)
39 TIGR00828 EIID-AGA PTS system, 30.2 1.4E+02 0.0031 29.5 6.4 52 156-218 23-80 (271)
40 PRK09855 PTS system N-acetylga 30.1 1.4E+02 0.0031 29.4 6.3 29 170-198 42-70 (263)
41 PF05529 Bap31: B-cell recepto 30.0 2.8E+02 0.0061 25.3 8.0 17 132-148 108-124 (192)
42 PRK12772 bifunctional flagella 27.5 2.5E+02 0.0053 31.0 8.2 24 168-191 481-510 (609)
43 PF14316 DUF4381: Domain of un 27.3 1.7E+02 0.0036 25.7 5.8 12 181-192 69-80 (146)
44 TIGR01404 FlhB_rel_III type II 27.1 3E+02 0.0066 28.0 8.3 24 168-191 217-246 (342)
45 TIGR03142 cytochro_ccmI cytoch 26.9 2.7E+02 0.006 23.6 6.9 44 133-176 4-54 (117)
46 PRK12495 hypothetical protein; 25.6 88 0.0019 30.2 3.9 35 166-200 9-45 (226)
47 PF14335 DUF4391: Domain of un 25.1 1.1E+02 0.0024 28.9 4.5 39 153-191 177-220 (221)
48 PRK12722 transcriptional activ 24.9 3.8E+02 0.0083 25.2 7.9 37 183-219 38-85 (187)
49 PF00153 Mito_carr: Mitochondr 24.2 48 0.001 25.9 1.6 40 181-220 46-90 (95)
50 PRK11103 PTS system mannose-sp 24.1 2.1E+02 0.0046 28.5 6.4 41 170-218 50-90 (282)
51 COG3707 AmiR Response regulato 23.2 2.5E+02 0.0054 26.6 6.3 48 147-195 114-161 (194)
52 PRK08156 type III secretion sy 23.0 3.9E+02 0.0084 27.6 8.2 24 168-191 213-242 (361)
53 TIGR00328 flhB flagellar biosy 22.7 2.3E+02 0.005 29.0 6.6 34 141-179 196-232 (347)
54 PRK12860 transcriptional activ 22.2 4.1E+02 0.0089 25.1 7.5 37 183-219 38-85 (189)
55 PRK12721 secretion system appa 22.1 2.6E+02 0.0057 28.6 6.8 31 144-179 199-232 (349)
56 PF06936 Selenoprotein_S: Sele 22.0 1.8E+02 0.0038 27.4 5.1 12 131-142 36-47 (190)
57 COG4879 Uncharacterized protei 21.5 2.6E+02 0.0056 26.8 6.0 26 177-202 30-55 (243)
58 PF06305 DUF1049: Protein of u 20.8 3.6E+02 0.0079 20.0 6.1 22 153-174 43-64 (68)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=2.2e-52 Score=401.14 Aligned_cols=210 Identities=28% Similarity=0.635 Sum_probs=188.1
Q ss_pred cccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 016810 97 TQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG 176 (382)
Q Consensus 97 ~~~~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~ 176 (382)
.+.+|.|+++|+.|++++++++|+.+ | .+||+||+++|+++|++++|++++|+|+++||+++|||+++|||||++
T Consensus 30 ~~~~g~~~~~~~~p~~~~l~~i~~~~---g--~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~ 104 (255)
T PRK02944 30 PKSTGFWNEYFVYPLSQLITYFANLF---G--SNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSS 104 (255)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHh---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcC
Confidence 35567788999999999999999875 3 469999999999999999999999999999999999999999999987
Q ss_pred C----HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCCcc
Q 016810 177 N----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGIS 252 (382)
Q Consensus 177 d----~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~gls 252 (382)
| ++++++|+++||||||+||++||+|+|+|+|||+++|+++|++.+ +.+++|+|+ ||+.+|
T Consensus 105 ~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~D------------ 169 (255)
T PRK02944 105 KDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQAD------------ 169 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcch------------
Confidence 3 567899999999999999999999999999999999999998754 778999999 999876
Q ss_pred ccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHh
Q 016810 253 WLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTN 332 (382)
Q Consensus 253 wl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitS 332 (382)
||++||++++++++++.++...... ..+.+++.|++++|+++++|+.++|+|+++||++|
T Consensus 170 ------------------p~~iLPil~~~~~~~~~~~~~~~~~--~~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s 229 (255)
T PRK02944 170 ------------------PYYILPIVAGITTFIQQKLMMAGTA--GQNPQMAMMLWLMPIMILIFAINFPAALSLYWVVG 229 (255)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987543211 12335678899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhh
Q 016810 333 NVLSTAQQVWLRKL 346 (382)
Q Consensus 333 nl~siiQ~~ilr~~ 346 (382)
|+++++|++++++.
T Consensus 230 ~~~~i~Q~~~l~~~ 243 (255)
T PRK02944 230 NIFMIAQTYLIKGP 243 (255)
T ss_pred HHHHHHHHHHHcCc
Confidence 99999999999873
No 2
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=7.8e-52 Score=390.33 Aligned_cols=213 Identities=31% Similarity=0.596 Sum_probs=189.9
Q ss_pred hHHHHHHHHHHHHHHHhhccccC--CCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHHHH
Q 016810 104 FGFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERI 181 (382)
Q Consensus 104 ~~~i~~pl~~vL~~l~~~l~~~g--lp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~ek~ 181 (382)
++++.++++.+++++|+.++.++ .+++||+||+++|+++|++++|++++|+|+++||+++|||+++||+|||+|++++
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~ 81 (223)
T PRK00145 2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL 81 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence 45677778888888888765431 2457999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCCccccccccCCC
Q 016810 182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGH 261 (382)
Q Consensus 182 q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~glswl~p~~~g~ 261 (382)
++|++++|||||+||++||+|+++|+|||+++|+++|++.+ +.+++|+|++||+.+|
T Consensus 82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~~--~~~~~flW~~dLt~~D--------------------- 138 (223)
T PRK00145 82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLTG--INGVSFLWIKDLAKPD--------------------- 138 (223)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCccChhhccCcc---------------------
Confidence 99999999999999999999999999999999999999864 7889999999999887
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHH
Q 016810 262 PPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQV 341 (382)
Q Consensus 262 p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~siiQ~~ 341 (382)
||++||++++++++++++++.+.. ..+.+.++.|++++|+++++++.++|+|+++||++||+++++|++
T Consensus 139 ---------p~~iLPil~~~~~~l~~~~~~~~~--~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~ 207 (223)
T PRK00145 139 ---------ITWILPILSGATTYLSGYLMTKAD--SSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY 207 (223)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHcCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998865431 223345788899999999999999999999999999999999999
Q ss_pred HHHhhCCCC
Q 016810 342 WLRKLGGAK 350 (382)
Q Consensus 342 ilr~~~~~~ 350 (382)
++|+....|
T Consensus 208 ~l~~~~~~~ 216 (223)
T PRK00145 208 FIKKLELKK 216 (223)
T ss_pred HHHhhcchh
Confidence 999865554
No 3
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.2e-51 Score=435.54 Aligned_cols=244 Identities=31% Similarity=0.565 Sum_probs=201.0
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHH
Q 016810 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (382)
Q Consensus 100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~e 179 (382)
.+|||++|+.|+.+++.++.+.++.+ ..+||+|||++|++||++++|++++|+++++||+++||||++||||||+|++
T Consensus 547 ~~GWf~fI~~Pia~~L~~ll~~fh~l--~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q 624 (795)
T PRK01001 547 FRGFFSFITEPFAALLFIIMKFFKFL--TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK 624 (795)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence 46999999999876665544443322 2379999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccc--cccCCCCchhhhhhccCCCccccccc
Q 016810 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLLPF 257 (382)
Q Consensus 180 k~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gfl--W~~dLs~pd~i~~~~~g~glswl~p~ 257 (382)
|+|+|+|+|||||||||++||+|+|+|+||||++|++++++.+ +...+|+ |++||+.+|++ ++|..|+
T Consensus 625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie--LRgasFLpgWI~DLSapDpl--------f~~~~~i 694 (795)
T PRK01001 625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL--LRGASFIPGWIDNLTAPDVL--------FSWETPI 694 (795)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH--hcCCchhhhhHhhccCCCcc--------ccccccc
Confidence 9999999999999999999999999999999999999998754 6678887 99999999953 2233222
Q ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHH
Q 016810 258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVL 335 (382)
Q Consensus 258 ~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~--~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~ 335 (382)
|...+++.+||++++++++++++++.... ..++.+++++.|+++||+|+++++.++|+||++||++||++
T Consensus 695 --------~FiGd~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~ 766 (795)
T PRK01001 695 --------WFIGNEFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLL 766 (795)
T ss_pred --------cccccchhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11113688999999999999999864321 11233445567778999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCcccccchhhhhhhhhcc
Q 016810 336 STAQQVWLRKLGGAKPVVTENASEIITAGRAKR 368 (382)
Q Consensus 336 siiQ~~ilr~~~~~~~~~~~~~~~~~~~~~~~~ 368 (382)
+++|+++++|.+..+.. +.++.++|.|+
T Consensus 767 SI~QQ~iI~k~~~~kKi-----~a~ie~nkkk~ 794 (795)
T PRK01001 767 GVIQQWVTNKILDSKHL-----KNEVVPNKKKH 794 (795)
T ss_pred HHHHHHHHHhhcchhHH-----HHHHHhhhhcc
Confidence 99999999996554432 46677777665
No 4
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=2e-50 Score=420.36 Aligned_cols=209 Identities=38% Similarity=0.751 Sum_probs=190.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHH
Q 016810 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (382)
Q Consensus 100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~e 179 (382)
++||+.+|++|+.++|+++|..+ | +||+||+++|+++|++++|++++|+|+++||+++||||++||||||+|++
T Consensus 298 ~~G~~~~~~~pl~~~L~~i~~~~---g---~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~ 371 (521)
T PRK01318 298 DYGWLWFITKPLFWLLDFLHSFV---G---NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQ 371 (521)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhc---c---cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHH
Confidence 58999999999999999999864 2 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCchhhhhhccCCCcccccccc
Q 016810 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPFV 258 (382)
Q Consensus 180 k~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gfl-W~~dLs~pd~i~~~~~g~glswl~p~~ 258 (382)
++|+|+++|||||||||++||+|+|+|+||||++|++++++.+ +.+++|+ |++||+.+|
T Consensus 372 k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D------------------ 431 (521)
T PRK01318 372 KMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD------------------ 431 (521)
T ss_pred HHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc------------------
Confidence 9999999999999999999999999999999999999998764 7788998 999999987
Q ss_pred CCCCCCCcchhhHHHHH-----HHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhh
Q 016810 259 DGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN 333 (382)
Q Consensus 259 ~g~p~~gw~d~~py~IL-----PIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSn 333 (382)
||++| |++++++++++++++..+ .++.| ++++++||+++++|+.++||||++||++||
T Consensus 432 ------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~~~~~~~~~PagL~lYW~~sn 494 (521)
T PRK01318 432 ------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLIFTFFFLSFPAGLVLYWIVNN 494 (521)
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677 999999999999987543 25543 345667999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 016810 334 VLSTAQQVWLRKLGGAKP 351 (382)
Q Consensus 334 l~siiQ~~ilr~~~~~~~ 351 (382)
+++++|++++++..+.+.
T Consensus 495 ~~si~Q~~~l~~~~~~~~ 512 (521)
T PRK01318 495 LLTIIQQYLINRRLEKKK 512 (521)
T ss_pred HHHHHHHHHHhhhcccch
Confidence 999999999999776553
No 5
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=6.9e-50 Score=384.08 Aligned_cols=211 Identities=27% Similarity=0.524 Sum_probs=187.0
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHhhcHHHHHHHHH
Q 016810 98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR 173 (382)
Q Consensus 98 ~~~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs----~~km~~lqPel~~Iqek 173 (382)
+.+|+|++++++|++++++++|+.+ | .+||+||+++|+++|++++|++++|+|+ ++||+++|||+++||||
T Consensus 32 ~~~~~~~~~~~~p~~~ll~~l~~~~---~--~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k 106 (256)
T PRK01622 32 HSDGFFDHYFVYPFSFLIQFVAHHI---G--GSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK 106 (256)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHh---c--ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence 4567778999999999999999875 3 4699999999999999999999999999 89999999999999999
Q ss_pred hhh--CHH---HHHHHHHHHHHHcCCCCCc-CchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhcc
Q 016810 174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247 (382)
Q Consensus 174 yk~--d~e---k~q~E~~~LyKe~gvnPl~-gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~ 247 (382)
||+ |++ ++++|++++|||||+||++ ||+|+|+|+|||+++|+++|++. ++.++||+|+ ||+.+|
T Consensus 107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D------- 176 (256)
T PRK01622 107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD------- 176 (256)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence 987 543 5789999999999999999 99999999999999999999975 4889999999 898764
Q ss_pred CCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHH
Q 016810 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI 327 (382)
Q Consensus 248 g~glswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~L 327 (382)
++||++++++++++++++++.....++++.+|.|++++|+++++++.++|+|+++
T Consensus 177 -------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~l 231 (256)
T PRK01622 177 -------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVL 231 (256)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999876432222334456788899999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhhCC
Q 016810 328 YWFTNNVLSTAQQVWLRKLGG 348 (382)
Q Consensus 328 YWitSnl~siiQ~~ilr~~~~ 348 (382)
||++||+++++|++++|+.+.
T Consensus 232 YW~~snl~si~Q~~~l~~~~~ 252 (256)
T PRK01622 232 YWITGGLFLMGQTIVLRKVME 252 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999743
No 6
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=3.6e-49 Score=360.86 Aligned_cols=181 Identities=40% Similarity=0.772 Sum_probs=168.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHH
Q 016810 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (382)
Q Consensus 130 swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPI 209 (382)
|||++|+++|+++|++++|++++|+|+++||+++|||++++|||||+|++++++|++++|||||+||++||+|+++|+||
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi 80 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHh
Q 016810 210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL 289 (382)
Q Consensus 210 fi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~glswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l 289 (382)
|+++|+++|++. ++.++||+|++||+.+| ||++||+++++++++++++
T Consensus 81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~ 128 (181)
T TIGR03592 81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL 128 (181)
T ss_pred HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999975 48899999999999886 8999999999999999998
Q ss_pred cCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHh
Q 016810 290 MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 345 (382)
Q Consensus 290 ~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~siiQ~~ilr~ 345 (382)
+.+..+ + .+.+|.|++++|+++++++.++|+|+++||++||+++++|++++|+
T Consensus 129 ~~~~~~-~--~~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 129 SPSGPP-D--PAQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred cCCCCC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 654322 2 2356778899999999999999999999999999999999999885
No 7
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=1.6e-48 Score=382.88 Aligned_cols=208 Identities=27% Similarity=0.489 Sum_probs=181.4
Q ss_pred CCc-hHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHhhcHHHHHHHHHhh
Q 016810 101 GGW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRYA 175 (382)
Q Consensus 101 ~gw-~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs----~~km~~lqPel~~Iqekyk 175 (382)
+|| ++++++|++.+++++|+.+ | .+||+||+++|++||++++|++++|+++ ++||+++|||+++||||||
T Consensus 34 ~g~~~~~l~~p~~~~l~~i~~~~---g--~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk 108 (307)
T PRK02463 34 TGFIWNFLGAPMSYFIDYFANNL---G--LGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLK 108 (307)
T ss_pred CchHHHHHHHHHHHHHHHHHHHc---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHh
Confidence 565 5899999999999999864 4 4699999999999999999999988865 7899999999999999998
Q ss_pred h--CH---HHHHHHHHHHHHHcCCCCCc--CchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccC
Q 016810 176 G--NQ---ERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSG 248 (382)
Q Consensus 176 ~--d~---ek~q~E~~~LyKe~gvnPl~--gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g 248 (382)
+ |+ +++|+|++++|||||+||++ ||+|+|+|+|||+++|+++++. +++.+++|+|+ ||+.|
T Consensus 109 ~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p--------- 176 (307)
T PRK02463 109 NATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSP--------- 176 (307)
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCch---------
Confidence 6 22 35689999999999999998 8999999999999999999975 46889999999 88754
Q ss_pred CCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHH
Q 016810 249 SGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIY 328 (382)
Q Consensus 249 ~glswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LY 328 (382)
+++||++++++++++.+++..... +++.+.||.|+++||+|+++|+.++|+||++|
T Consensus 177 -----------------------~~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~Pim~~~~~~~~PagL~lY 232 (307)
T PRK02463 177 -----------------------SLVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMPIMMVVFSFSSPAGVGLY 232 (307)
T ss_pred -----------------------hHHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999987644322 33445678899999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhhCCC
Q 016810 329 WFTNNVLSTAQQVWLRKLGGA 349 (382)
Q Consensus 329 WitSnl~siiQ~~ilr~~~~~ 349 (382)
|++||+|+++|++++++...+
T Consensus 233 W~~snlfsi~Q~~i~~~~~~p 253 (307)
T PRK02463 233 WLVGGFFSIIQQLITTYILKP 253 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999866553
No 8
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.6e-48 Score=382.14 Aligned_cols=247 Identities=26% Similarity=0.442 Sum_probs=186.3
Q ss_pred CCchHHHHHHHHHHH----HHHHhhcccc-C--CCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHH
Q 016810 101 GGWFGFISEAMEFVL----KILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR 173 (382)
Q Consensus 101 ~gw~~~i~~pl~~vL----~~l~~~l~~~-g--lp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqek 173 (382)
++||++|++|++|++ .++|..+..+ | .+++||+||+++|+++|++++|++++|+|+++||+++|||+++||+|
T Consensus 5 ~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~k 84 (329)
T PRK01315 5 ADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEK 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 578999999988877 5557655433 2 13479999999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCCcc-
Q 016810 174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGIS- 252 (382)
Q Consensus 174 yk~d~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~gls- 252 (382)
||+|++++++|+++|||||||||+++|+|+|+|+|||+++|+++|++++. . ..-.+|.+++... ...+...|..++
T Consensus 85 yk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~-~-~~~~~~~~~~~~s-~~~~~~fg~~L~~ 161 (329)
T PRK01315 85 YKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASR-G-DGIGPINPPLLES-FRHAHIFGAPLAA 161 (329)
T ss_pred HHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc-c-ccccchhhhHHHh-hhccccccccccc
Confidence 99999999999999999999999999999999999999999999987642 1 1112233222210 000111122111
Q ss_pred ccc-cccCCCCCCCcch-hhHHHHHHHHHHHHHHHHHHh-cC----CCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHh
Q 016810 253 WLL-PFVDGHPPLGWHD-TAAYLVLPVLLVVSQYASMEL-MK----PPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGL 325 (382)
Q Consensus 253 wl~-p~~~g~p~~gw~d-~~py~ILPIL~~~s~~ls~~l-~~----~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL 325 (382)
+.+ ++. .|+.+ .+.+++||+++++++|++++. +. +...++++.+++|.|+++||+|+++++.++|+||
T Consensus 162 ~f~~~~~-----~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL 236 (329)
T PRK01315 162 TFLQALN-----AGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGV 236 (329)
T ss_pred ccccccc-----ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 111 12212 256789999999999988753 22 1122355556788899999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHhhCCCCCcccc
Q 016810 326 SIYWFTNNVLSTAQQVWLRKLGGAKPVVTE 355 (382)
Q Consensus 326 ~LYWitSnl~siiQ~~ilr~~~~~~~~~~~ 355 (382)
++||++||+|+++|+++++|.++.++...+
T Consensus 237 ~LYW~~snl~si~Qq~~v~r~~p~p~s~a~ 266 (329)
T PRK01315 237 LFYWLTSNVWTMGQQFYVIRNNPTPGSPAA 266 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence 999999999999999998887765544443
No 9
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=6.1e-48 Score=355.33 Aligned_cols=193 Identities=39% Similarity=0.730 Sum_probs=176.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHH
Q 016810 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (382)
Q Consensus 130 swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPI 209 (382)
|||++|+++|+++|++++|++++|+|+++||+++|||+++|||||++|++++++|++++|||||+||+++|+|+++|+||
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi 81 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI 81 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh-hccccCccccccCCCCchhhhhhccCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 016810 210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASME 288 (382)
Q Consensus 210 fi~ly~aLr~m~~-~~l~~~gflW~~dLs~pd~i~~~~~g~glswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~ 288 (382)
|+++|+++|++++ +++.++||+|++||+.+|+. ...||++||++++++++++++
T Consensus 82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~-------------------------~~~p~~iLPil~~~~~~~~~~ 136 (198)
T PF02096_consen 82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT-------------------------MGLPYFILPILAGASMFLNQE 136 (198)
T ss_pred HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc-------------------------chhHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 67889999999999999831 123899999999999999999
Q ss_pred hcCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHhhC
Q 016810 289 LMKP--PQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG 347 (382)
Q Consensus 289 l~~~--~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~siiQ~~ilr~~~ 347 (382)
+..+ ....+..++.+|.|.+++|+++++++.++|+|+.+||++||+++++|++++|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~ 197 (198)
T PF02096_consen 137 LSMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRPF 197 (198)
T ss_pred HHHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8643 2222445567788999999999999999999999999999999999999999865
No 10
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3e-47 Score=373.06 Aligned_cols=232 Identities=24% Similarity=0.415 Sum_probs=179.6
Q ss_pred chHHHHHHHHHHHHHHHhhcccc-C--CCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHH
Q 016810 103 WFGFISEAMEFVLKILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (382)
Q Consensus 103 w~~~i~~pl~~vL~~l~~~l~~~-g--lp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~e 179 (382)
+++++.+|+++++.++|+.+..+ | .+.+||+||+++|+++|++++|++++|+|+++||+++|||+++|||||++|++
T Consensus 1 ml~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~ 80 (304)
T PRK03449 1 MLDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQ 80 (304)
T ss_pred ChhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHH
Confidence 35778999999999999976432 2 23469999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhh--cccc---------------------CccccccCC
Q 016810 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT---------------------EGFFWIPSL 236 (382)
Q Consensus 180 k~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~--~l~~---------------------~gflW~~dL 236 (382)
++++|+++|||||||||++||+|+|+|+|||+++|+++|++... +..+ ++|+|.+
T Consensus 81 ~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~-- 158 (304)
T PRK03449 81 KMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR-- 158 (304)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh--
Confidence 99999999999999999999999999999999999999998542 1111 1233221
Q ss_pred CCchhhhhhccCCCcc-ccc-------cccCCCCCCCcchh-hHHHHHHHHHHHHHHHHHHhcCCC----CCCCHHhH-H
Q 016810 237 SGPTTIAARQSGSGIS-WLL-------PFVDGHPPLGWHDT-AAYLVLPVLLVVSQYASMELMKPP----QTDDPAQK-N 302 (382)
Q Consensus 237 s~pd~i~~~~~g~gls-wl~-------p~~~g~p~~gw~d~-~py~ILPIL~~~s~~ls~~l~~~~----~~~~~~qk-~ 302 (382)
..|.+++ |+. ++.+. +-.|. +.++++|+++++++|++++++... +..++++. +
T Consensus 159 ---------~~g~pL~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m 225 (304)
T PRK03449 159 ---------LFGAPLSAYITMPRSGLDAFVDF----TRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMM 225 (304)
T ss_pred ---------hcCCChHhhhcccchhhchhccc----ccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHH
Confidence 2222221 211 01010 10111 245678999999999998875321 11233333 3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHhhCCC
Q 016810 303 TLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA 349 (382)
Q Consensus 303 ~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~siiQ~~ilr~~~~~ 349 (382)
+|.|+++||+|+++++.++|+|+.|||++||+|+++||+++++..+.
T Consensus 226 ~k~M~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~~~~ 272 (304)
T PRK03449 226 NKLALWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGKIDK 272 (304)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 47888999999999999999999999999999999999999875444
No 11
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3.1e-47 Score=379.40 Aligned_cols=222 Identities=19% Similarity=0.369 Sum_probs=184.1
Q ss_pred CCC-chHHHHHHHHHHHHHHH--hhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 016810 100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG 176 (382)
Q Consensus 100 ~~g-w~~~i~~pl~~vL~~l~--~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~ 176 (382)
++| |+++|++|++++++++| +.+. ...+++||+||+++|+++|++++|++++|+++++||+++|||+++||+|||+
T Consensus 100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~ 178 (357)
T PRK02201 100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD 178 (357)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 345 77999999999999996 2221 1234679999999999999999999999999999999999999999999997
Q ss_pred C------HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCC
Q 016810 177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG 250 (382)
Q Consensus 177 d------~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~g 250 (382)
| ++++|+|+++||||||+||++||+|+|+|+|||+++|+++|++.+ +...+|+|+ ||+.+|..
T Consensus 179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flgi-dLs~~~~~-------- 247 (357)
T PRK02201 179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLGI-DLSATSWQ-------- 247 (357)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCccc-ccCCCChh--------
Confidence 6 678999999999999999999999999999999999999998754 778899999 89987621
Q ss_pred ccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcC----CC---CC----CCHHhHHHHHHHHHHHHHHHHHhh
Q 016810 251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----PP---QT----DDPAQKNTLLVFKFLPLMIGYFSL 319 (382)
Q Consensus 251 lswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~----~~---~~----~~~~qk~~k~m~~~mPlmi~~f~~ 319 (382)
.++ .+..+|+++++++++++++++.+++ +. .. +.++.+.+++|+++||+++++++.
T Consensus 248 --~~~-----------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~ 314 (357)
T PRK02201 248 --EIF-----------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGV 314 (357)
T ss_pred --hhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 011 1122677888888888887776532 10 01 112334567899999999999999
Q ss_pred hhhhHhHHHHHHhhHHHHHHHHHHHhh
Q 016810 320 SVPSGLSIYWFTNNVLSTAQQVWLRKL 346 (382)
Q Consensus 320 ~~PagL~LYWitSnl~siiQ~~ilr~~ 346 (382)
++|+||.|||++||+|+++|++++++.
T Consensus 315 ~~PaGL~LYW~~snl~tI~Qq~~i~~~ 341 (357)
T PRK02201 315 IFAAGVQIYWIIGGIWTILQTLGIHYF 341 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986
No 12
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.7e-46 Score=370.04 Aligned_cols=215 Identities=35% Similarity=0.635 Sum_probs=189.5
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhh-hCH
Q 016810 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GNQ 178 (382)
Q Consensus 100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk-~d~ 178 (382)
+.|||.++..++...++++|... |. +||++|+++|++||++++|++.+|.++++||+++|||+++|||||| +|+
T Consensus 84 ~~~~f~~~~~~~~~~~~~~~~~~---g~--n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~ 158 (314)
T COG0706 84 DYGWFWNILAPLFPLLLFIDSFS---GL--NWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK 158 (314)
T ss_pred chhhHHHHHHHHHHHHHHHHHhc---Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence 57899888888888898886543 33 7999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCchhhhhhccCCCccccccc
Q 016810 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF 257 (382)
Q Consensus 179 ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gfl-W~~dLs~pd~i~~~~~g~glswl~p~ 257 (382)
+++|+|+++|||||||||++||+|+++|+|||+++|+++++..+ +..++|+ |+.||+.+|+
T Consensus 159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl~~~dp---------------- 220 (314)
T COG0706 159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDLSLPDP---------------- 220 (314)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcccCCCC----------------
Confidence 99999999999999999999999999999999999999998754 6677777 9999998772
Q ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHH
Q 016810 258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLST 337 (382)
Q Consensus 258 ~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~si 337 (382)
+..+++|+++++++|++++++....+ +++.+++++|+++||+++.+++.++|+||.+||++||+|++
T Consensus 221 ------------~~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi 287 (314)
T COG0706 221 ------------DYILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSI 287 (314)
T ss_pred ------------chhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Confidence 02236699999999999998765422 33344677899999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 016810 338 AQQVWLRKLGGAK 350 (382)
Q Consensus 338 iQ~~ilr~~~~~~ 350 (382)
+||+++++....+
T Consensus 288 ~Qq~ii~~~~~~~ 300 (314)
T COG0706 288 LQQYILNKPLEKK 300 (314)
T ss_pred HHHHHHhhhhhhh
Confidence 9999999976655
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=1e-43 Score=360.61 Aligned_cols=256 Identities=23% Similarity=0.362 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHHHhhccc-cCC--CcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhC---
Q 016810 104 FGFISEAMEFVLKILKDGIDA-VHV--PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN--- 177 (382)
Q Consensus 104 ~~~i~~pl~~vL~~l~~~l~~-~gl--p~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d--- 177 (382)
+++|++|++++|+++|..++. +|+ +++||++|+++|++||++++|++++|+++++||+.+||++++||+|||++
T Consensus 2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~ 81 (429)
T PRK00247 2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE 81 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence 678999999999999998873 554 34599999999999999999999999999999999999999999999973
Q ss_pred --HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCchh---hhhhccCCC
Q 016810 178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTT---IAARQSGSG 250 (382)
Q Consensus 178 --~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~--~~l~~~gflW~~dLs~pd~---i~~~~~g~g 250 (382)
++++++|+++|||||||||++||+|+|+|+|||+++|++||+|+. +|+.+..+.|+--|+.+|. +.++.+|.+
T Consensus 82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp 161 (429)
T PRK00247 82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP 161 (429)
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence 356889999999999999999999999999999999999999975 4555444445555555442 223344444
Q ss_pred ccccccccCCC--CCCCc-chhhHHHHHHHHH--HHHHHHHHHhcCCC-----CCCCH----HhHHHHHHHHHHHHHHHH
Q 016810 251 ISWLLPFVDGH--PPLGW-HDTAAYLVLPVLL--VVSQYASMELMKPP-----QTDDP----AQKNTLLVFKFLPLMIGY 316 (382)
Q Consensus 251 lswl~p~~~g~--p~~gw-~d~~py~ILPIL~--~~s~~ls~~l~~~~-----~~~~~----~qk~~k~m~~~mPlmi~~ 316 (382)
++-.+ .+..+ -..|+ ...+.+++||+++ ++.+++++.++... ...++ +++.|+.|++++|+|+++
T Consensus 162 L~~~~-sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~ 240 (429)
T PRK00247 162 LPAYV-SMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLS 240 (429)
T ss_pred ccccc-ccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 33110 00000 00011 0113467888544 44455776653221 11122 344456677889999988
Q ss_pred Hhhh--hhhHhHHHHHHhhHHHHHHHH----HHHhhCCCCCcccccchhh
Q 016810 317 FSLS--VPSGLSIYWFTNNVLSTAQQV----WLRKLGGAKPVVTENASEI 360 (382)
Q Consensus 317 f~~~--~PagL~LYWitSnl~siiQ~~----ilr~~~~~~~~~~~~~~~~ 360 (382)
++++ +|+||.|||++||+|+++||+ ++++.++..+.+.|-....
T Consensus 241 ~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~~~~~~ 290 (429)
T PRK00247 241 LGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKEHHAEQ 290 (429)
T ss_pred HHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence 7765 799999999999999999999 6788888877666544433
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=6.7e-37 Score=299.64 Aligned_cols=114 Identities=32% Similarity=0.595 Sum_probs=105.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHH----HHHHHhh
Q 016810 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA 175 (382)
Q Consensus 100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~----~Iqekyk 175 (382)
+.||.-+..+++..+++++|..+ + +||+||+++|++||++++|++++|+|+++||+.+||||+ +||||||
T Consensus 2 dfG~g~i~~~il~~iL~f~y~~v-----g-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK 75 (375)
T PRK02654 2 DFGIGFISNNVMLPILDFFYGIV-----P-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK 75 (375)
T ss_pred CcchHHHHHhHHHHHHHHHHHhc-----c-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence 46886666688999999999753 2 799999999999999999999999999999999999985 7999999
Q ss_pred hCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhh
Q 016810 176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV 220 (382)
Q Consensus 176 ~d~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m 220 (382)
+|++++++|+++|||||| ||++||+|+|+|+|||+++|+++|..
T Consensus 76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~s 119 (375)
T PRK02654 76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGS 119 (375)
T ss_pred CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999 99999999999999999999999973
No 15
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.1e-23 Score=208.94 Aligned_cols=214 Identities=21% Similarity=0.350 Sum_probs=178.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh--
Q 016810 99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-- 176 (382)
Q Consensus 99 ~~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~-- 176 (382)
...+|.. +.-++..|+.+|... |+| ||.+|+..|+.+|.+++|+.++++|+..|+.++.||+.++.++.+.
T Consensus 77 ~~~~~~p--~~~lq~~l~~~h~~~---g~p--ww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~ 149 (372)
T KOG1239|consen 77 ALSSWRP--VATLQNELERLHVYS---GLP--WWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAA 149 (372)
T ss_pred HhcccCc--hhHHHHHHHHHHHHh---CCc--chHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhh
Confidence 3455555 445778888898875 565 8999999999999999999999999999999999999999998865
Q ss_pred -C---HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCchhhhhhccCCC
Q 016810 177 -N---QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSG 250 (382)
Q Consensus 177 -d---~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~--~~l~~~gflW~~dLs~pd~i~~~~~g~g 250 (382)
| ....++|+++++|+||++| +....+++|.|+|++.|.+||.|+. +++.+++++|++||+.+|
T Consensus 150 ~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d---------- 218 (372)
T KOG1239|consen 150 QDNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD---------- 218 (372)
T ss_pred ccccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC----------
Confidence 1 2356678999999999999 9998899999999999999999985 467788999999999886
Q ss_pred ccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHH
Q 016810 251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYW 329 (382)
Q Consensus 251 lswl~p~~~g~p~~gw~d~~py~ILPIL~~~s~~ls~~l~~~~~~-~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYW 329 (382)
||+++|+++.+++...+++...... .+.....|+.+.+++|+.+..++.++|++++.||
T Consensus 219 --------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~yw 278 (372)
T KOG1239|consen 219 --------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYW 278 (372)
T ss_pred --------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhh
Confidence 7899999999999999887543221 1223345778899999999999999999999999
Q ss_pred HHhhHHHHHHHHH----HHhhCCCCCccc
Q 016810 330 FTNNVLSTAQQVW----LRKLGGAKPVVT 354 (382)
Q Consensus 330 itSnl~siiQ~~i----lr~~~~~~~~~~ 354 (382)
+ ++++|..+ .|...+..++..
T Consensus 279 l----~s~~~~~vlr~~vr~~l~~~~~~~ 303 (372)
T KOG1239|consen 279 L----FSLVQGLVLRSEVRKKLGIPDVPS 303 (372)
T ss_pred h----hHHHHHHHhHHHHHHhcCCCCCCC
Confidence 9 99999998 455566655555
No 16
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=5.1e-10 Score=113.51 Aligned_cols=248 Identities=24% Similarity=0.230 Sum_probs=209.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHH
Q 016810 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (382)
Q Consensus 100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~d~e 179 (382)
.+.|+..+....+..+..++.....++.++.++.++...|+++++...|+...+..+..-++..+|....+...+...+.
T Consensus 4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p 83 (372)
T KOG1239|consen 4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP 83 (372)
T ss_pred cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence 57899989999999999999888888888889999999999999999999988888999999999999998888888655
Q ss_pred --HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhhhhhccCCCccccccc
Q 016810 180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF 257 (382)
Q Consensus 180 --k~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr~m~~~~l~~~gflW~~dLs~pd~i~~~~~g~glswl~p~ 257 (382)
.+|.++.++|+-.|++.|++|+...+-++..+..|.+.+. .++...+.++.|++.+...-..++.+.+.++.|..+.
T Consensus 84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~ 162 (372)
T KOG1239|consen 84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ 162 (372)
T ss_pred hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence 8999999999999999999999999999999999999986 5555668889999998887777777777888999888
Q ss_pred cCCCCCCCcc-hhhHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHH
Q 016810 258 VDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLS 336 (382)
Q Consensus 258 ~~g~p~~gw~-d~~py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~~~~PagL~LYWitSnl~s 336 (382)
.+.+.+.||. +...+.+++..+.++.|+.++.|..+....+.+ ....+|-+..+.-...+.++..||+.+++..
T Consensus 163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~ 237 (372)
T KOG1239|consen 163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPDPLYILPGITLATLTLFIEL 237 (372)
T ss_pred HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence 8888888887 888889999999999999999877443212221 4456677777788889999999999999999
Q ss_pred HHHHHHHH-hhCCCCCcc
Q 016810 337 TAQQVWLR-KLGGAKPVV 353 (382)
Q Consensus 337 iiQ~~ilr-~~~~~~~~~ 353 (382)
-.|+.... +..++.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~ 255 (372)
T KOG1239|consen 238 GAETGLSSSKLLPAMKSF 255 (372)
T ss_pred HHHhhhhcccccchhHHH
Confidence 99987776 455554333
No 17
>COG1422 Predicted membrane protein [Function unknown]
Probab=96.55 E-value=0.015 Score=54.61 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh-----CH---HHHHHHHHHHHHHcCCCCCc-Cc
Q 016810 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPLA-GC 200 (382)
Q Consensus 130 swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~-----d~---ek~q~E~~~LyKe~gvnPl~-gc 200 (382)
+..++|++..+++=+.+ -+.-+-....+||+++|.++++.||++++ |. +|+|+|+++...... ..++ .+
T Consensus 45 ~p~lvilV~avi~gl~~-~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~-elmk~qf 122 (201)
T COG1422 45 PPHLVILVAAVITGLYI-TILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQR-ELMKMQF 122 (201)
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 34566776666655432 22223345688999999999999988864 43 244444433332221 1111 24
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 016810 201 LPTLATIPVWIGLYQALSNVA 221 (382)
Q Consensus 201 lp~LiQiPIfi~ly~aLr~m~ 221 (382)
-|++.+.++.|-+|.=++...
T Consensus 123 kPM~~~~v~tI~~F~Wl~~~~ 143 (201)
T COG1422 123 KPMLYISVLTIPFFAWLRWFV 143 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 477777777776666666543
No 18
>COG1422 Predicted membrane protein [Function unknown]
Probab=83.62 E-value=27 Score=33.09 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHH---HHHHHHHHhhcHHHHHHHH--------HhhhCHHHHHHHHHHHHHHcCCCCCcCch
Q 016810 133 FAIILLTVIVKVATFPLTKKQ---VESTLAMQNLQPKIKAIQQ--------RYAGNQERIQLETSRLYRQAGVNPLAGCL 201 (382)
Q Consensus 133 ~aIillTliVRlillPL~ikq---~rs~~km~~lqPel~~Iqe--------kyk~d~ek~q~E~~~LyKe~gvnPl~gcl 201 (382)
++=+++++..-++- -+.+-+ .+-+..|++.|.|.+|.+| |.++.|+++.+.+++++|.. .+|+ ..
T Consensus 52 V~avi~gl~~~i~~-~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q-fkPM--~~ 127 (201)
T COG1422 52 VAAVITGLYITILQ-KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ-FKPM--LY 127 (201)
T ss_pred HHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhH--HH
Confidence 33333444444333 333444 3446677889999988876 33345667777778888776 2343 33
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 016810 202 PTLATIPVWIGLYQALSNVAN 222 (382)
Q Consensus 202 p~LiQiPIfi~ly~aLr~m~~ 222 (382)
-..+.||+|.=+++-+.....
T Consensus 128 ~~v~tI~~F~Wl~~~~~~~~~ 148 (201)
T COG1422 128 ISVLTIPFFAWLRWFVGTGGY 148 (201)
T ss_pred HHHHHHHHHHHHHHHHccCcc
Confidence 466799999999999987754
No 19
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=82.70 E-value=5.6 Score=35.85 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHHHhhcHHHHHHHHHh
Q 016810 131 YGFAIILLTVIVKVATFPLTKK-----QVESTLAMQNLQPKIKAIQQRY 174 (382)
Q Consensus 131 wg~aIillTliVRlillPL~ik-----q~rs~~km~~lqPel~~Iqeky 174 (382)
..+.|+++.++.-++.-=+... ..+.+.++++++-+.++++++.
T Consensus 15 ~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 63 (168)
T PF01956_consen 15 ITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNG 63 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcC
Confidence 3345555555444433322222 2344555555666666666543
No 20
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=72.41 E-value=2.8 Score=42.25 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=21.0
Q ss_pred CCCchHHHHHHHHHHHHHHHhhc
Q 016810 100 NGGWFGFISEAMEFVLKILKDGI 122 (382)
Q Consensus 100 ~~gw~~~i~~pl~~vL~~l~~~l 122 (382)
++|||.+|+.|+.++|+++|.++
T Consensus 343 DyGw~~~iakPlf~lL~~~~~~v 365 (366)
T TIGR03593 343 DYGWLWFIAKPLFWLLDFFHSLV 365 (366)
T ss_pred eeecHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999753
No 21
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=69.89 E-value=6.9 Score=37.71 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=16.6
Q ss_pred hhhhhhhhhhhhhhcccccccccc
Q 016810 63 VFSRTESLLYTLADAAVSLDSASG 86 (382)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~ 86 (382)
..++.....|+..||-|.+-..++
T Consensus 16 ~~~~lr~~VlG~nDGlvt~falva 39 (234)
T cd02433 16 MSGNLRAAVFGANDGLVSNLALVM 39 (234)
T ss_pred hhhHHHHHHHhccchHHHHHHHHH
Confidence 445666778999998777655444
No 22
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=65.70 E-value=40 Score=32.68 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHH---Hhhh-C-------HHHHHHHHHHHHHHcCCC
Q 016810 127 VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQ---RYAG-N-------QERIQLETSRLYRQAGVN 195 (382)
Q Consensus 127 lp~swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqe---kyk~-d-------~ek~q~E~~~LyKe~gvn 195 (382)
.|..|+..+++-.++.=.++.-.+.++.+ .-.++.+|+.+ -|++ | .++.++|+++..|..
T Consensus 21 ~p~y~~~~filYfiv~~~i~~~~~~Rs~r------r~~~~~~Ei~~g~~L~eEk~~~kl~~kD~el~~E~~~~~k~~--- 91 (233)
T PF09973_consen 21 FPQYYFEVFILYFIVFFGIMIVMGIRSYR------RGRKPRSEISKGRPLFEEKNANKLMEKDKELQKEYKKQMKAS--- 91 (233)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcc------CCcccHHHHhcCCcccccccHHHHHHhCHHHHHHHHHHHHHH---
Confidence 46667777777777766776666666666 11223333311 1111 1 134566777777765
Q ss_pred CCcCchHHHHHHHHHHHHHHHHHhh
Q 016810 196 PLAGCLPTLATIPVWIGLYQALSNV 220 (382)
Q Consensus 196 Pl~gclp~LiQiPIfi~ly~aLr~m 220 (382)
+. +++-+|+++.++..+.+.
T Consensus 92 ----~~-~ll~~~i~ii~~~~~~~~ 111 (233)
T PF09973_consen 92 ----MM-NLLILPIYIILFFLLYPY 111 (233)
T ss_pred ----HH-HHHHHHHHHHHHHHHHHh
Confidence 23 344578877777776654
No 23
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=63.69 E-value=13 Score=34.49 Aligned_cols=37 Identities=32% Similarity=0.599 Sum_probs=22.5
Q ss_pred HHHHHHHHH-cCCCCCcCchHH----------HHHHHHHHHHHHHHHh
Q 016810 183 LETSRLYRQ-AGVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (382)
Q Consensus 183 ~E~~~LyKe-~gvnPl~gclp~----------LiQiPIfi~ly~aLr~ 219 (382)
.++.+|||| +|++|-+|.+|. -++.-+|+.+|+.+++
T Consensus 38 ~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~ 85 (175)
T PF05280_consen 38 ERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRK 85 (175)
T ss_dssp HHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHh
Confidence 456799999 899999998883 2566678888888775
No 24
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=60.13 E-value=12 Score=35.77 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHcCCCC
Q 016810 166 KIKAIQQRYAGNQERIQLETSRLYRQAGVNP 196 (382)
Q Consensus 166 el~~Iqekyk~d~ek~q~E~~~LyKe~gvnP 196 (382)
|+++-+++.++++|.-++|+.++|+++|.++
T Consensus 67 e~~re~~~i~~~pe~E~~el~~iy~~kG~~~ 97 (225)
T cd02434 67 EKKREEWEIENYPEGEKSEMVEIYSLKGLSE 97 (225)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHcCCCH
Confidence 4444444555667777777777787777665
No 25
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=59.83 E-value=13 Score=35.39 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=16.3
Q ss_pred HhhhCHHHHHHHHHHHHHHcCCCC
Q 016810 173 RYAGNQERIQLETSRLYRQAGVNP 196 (382)
Q Consensus 173 kyk~d~ek~q~E~~~LyKe~gvnP 196 (382)
+.++++++-++|+.++|+++|++|
T Consensus 79 ~i~~~p~~e~~el~~~~~~~G~~~ 102 (218)
T cd02432 79 ELAEDPEAELEELADIYEERGLSP 102 (218)
T ss_pred HHHhCcHHHHHHHHHHHHHcCCCH
Confidence 334566666677778888877765
No 26
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.47 E-value=94 Score=32.15 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh---CHH
Q 016810 134 AIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (382)
Q Consensus 134 aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~---d~e 179 (382)
+++++.+++=++=++...++.....||. -+|+++.||+ ||+
T Consensus 196 ~~~~~~liia~~D~~~qr~~~~k~lkMt-----KqEVKdE~K~sEGdPe 239 (363)
T COG1377 196 AVLLLLLIVAAFDYFYQRFQYIKKLKMT-----KQEVKDEYKQSEGDPE 239 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCc-----HHHHHHHHhhccCChh
Confidence 3333334444444555555555555553 3567777774 776
No 27
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=48.09 E-value=75 Score=32.18 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=60.9
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCc--chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh-
Q 016810 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPY--SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG- 176 (382)
Q Consensus 100 ~~gw~~~i~~pl~~vL~~l~~~l~~~glp~--swg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~- 176 (382)
..++++.++..|+-.|+-+|..+..+|+.. +.|..=.+..+- ..--+...+.+|+.++.++.-+.
T Consensus 217 ~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~------------~~vdEy~~~ykp~~Ek~k~~k~~~ 284 (366)
T KOG1532|consen 217 ESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD------------ESVDEYEEEYKPEYEKKKAEKRLA 284 (366)
T ss_pred ccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH------------HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 578899999999999999999888776531 244443333222 33345677788888776554333
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcCch
Q 016810 177 NQERIQLETSRLYRQAGVNPLAGCL 201 (382)
Q Consensus 177 d~ek~q~E~~~LyKe~gvnPl~gcl 201 (382)
+.++.+.++.++.|.-+++++++-.
T Consensus 285 ee~~k~k~le~l~kdm~~~~~~~d~ 309 (366)
T KOG1532|consen 285 EEERKKKQLEKLMKDMHVSPLKNDV 309 (366)
T ss_pred HHHhhhhhHHHHHhccCcccccCCC
Confidence 3334456678999999999986533
No 28
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=47.43 E-value=33 Score=33.20 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHhhcHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCcCchH
Q 016810 160 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLP 202 (382)
Q Consensus 160 m~~lqPel~~Iqekyk~d~ek~q~E~~~LyKe~gvnPl~gclp 202 (382)
++.+---+.++-++-.-|++++-...++.|+++|+.|+.|.-|
T Consensus 10 I~va~~l~~~il~~~~~~R~~lv~~L~~~Y~~~gIeP~RG~s~ 52 (231)
T PF09958_consen 10 IEVATDLWSRILRGEVLDREELVELLREVYEENGIEPFRGLSP 52 (231)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCcCCCCCc
Confidence 3333333444444422278888899999999999999999876
No 29
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=43.71 E-value=1.6e+02 Score=31.50 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhh-----hCHHHHHHHHHHHHHHcCCC-------
Q 016810 130 SYGFAIILLTVIVK--VATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-----GNQERIQLETSRLYRQAGVN------- 195 (382)
Q Consensus 130 swg~aIillTliVR--lillPL~ikq~rs~~km~~lqPel~~Iqekyk-----~d~ek~q~E~~~LyKe~gvn------- 195 (382)
+||+..++..+.|- +|++|=.+.-+|+.+-+-..+|.--+-+++.+ .++++......++.++.++.
T Consensus 56 SwWfl~iivlL~VSLv~C~lpr~~~~~ra~r~~~~~~p~~l~r~~h~~~~~v~~~~~~~~~~i~~~L~~~~~kir~e~~~ 135 (478)
T COG1333 56 SWWFLAIIVLLGVSLVGCSLPRFPALYRALRAKPVRAPRNLARLRHSAELDVKIDPEAVKAKIEKLLRGKGYKIREEGSV 135 (478)
T ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHhhcccccCchhHHhhhccCccccCCchHHHHHHHHHHHhcCCeEEEeccce
Confidence 46665555555555 77788776666655544344443322222222 13333333333443333322
Q ss_pred -C------CcCchHHHHHHHHHHHHHHHHHhh
Q 016810 196 -P------LAGCLPTLATIPVWIGLYQALSNV 220 (382)
Q Consensus 196 -P------l~gclp~LiQiPIfi~ly~aLr~m 220 (382)
- +.-.-|.+.-+-+.+.+--++-++
T Consensus 136 ~i~AeKG~~~r~G~ii~HiaLliil~Gal~~~ 167 (478)
T COG1333 136 SIAAEKGRFSRWGPIIFHIALLIILVGALLDF 167 (478)
T ss_pred eEEeccccccchhhHHHHHHHHHHHHHHHHhh
Confidence 1 223457777777777777666664
No 30
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.50 E-value=1.4e+02 Score=26.70 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=14.3
Q ss_pred HhhhhhHHHHHHHHHHHhhcHHHHHHHHHhh
Q 016810 145 ATFPLTKKQVESTLAMQNLQPKIKAIQQRYA 175 (382)
Q Consensus 145 illPL~ikq~rs~~km~~lqPel~~Iqekyk 175 (382)
++.-|+-.+.+.++| +|-||++.+.+..
T Consensus 24 li~Rlt~~~~k~q~~---~q~ELe~~K~~ld 51 (138)
T COG3105 24 LIARLTNRKLKQQQK---LQYELEKVKAQLD 51 (138)
T ss_pred HHHHHcchhhhhHHH---HHHHHHHHHHHHH
Confidence 333444455554444 4457776665543
No 31
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=39.36 E-value=44 Score=32.38 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=16.8
Q ss_pred HHHhhhCHHHHHHH-HHHHHHHcCCCC
Q 016810 171 QQRYAGNQERIQLE-TSRLYRQAGVNP 196 (382)
Q Consensus 171 qekyk~d~ek~q~E-~~~LyKe~gvnP 196 (382)
+++.+++++.-++| +.++|+++|..+
T Consensus 90 ~~~i~~~~~~E~~e~l~~~~~~~G~~~ 116 (241)
T cd02435 90 QEAVEASPSTEQEEIILYDLVQYGLVP 116 (241)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHcCCCH
Confidence 33445566655666 778888877765
No 32
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=39.10 E-value=57 Score=30.10 Aligned_cols=61 Identities=20% Similarity=0.368 Sum_probs=42.6
Q ss_pred HHHHhhcHHHHHHHHHhhhCHHHH-HHHHHHHHH----H------cCCCCCc---CchHHHHHHHHHHHHHHHHH
Q 016810 158 LAMQNLQPKIKAIQQRYAGNQERI-QLETSRLYR----Q------AGVNPLA---GCLPTLATIPVWIGLYQALS 218 (382)
Q Consensus 158 ~km~~lqPel~~Iqekyk~d~ek~-q~E~~~LyK----e------~gvnPl~---gclp~LiQiPIfi~ly~aLr 218 (382)
.+..+.++++++++||-|+|-.++ .+|.++||+ | .+.|=++ ||...++-+-+++++|.-++
T Consensus 49 ~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~ 123 (167)
T KOG4075|consen 49 IRFRELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNRGSNEWKTVFGVAGFFLGLTISVILFGKVR 123 (167)
T ss_pred hhhhcccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccCCCCcccchhhHHHHHHHHHHHHHHHHhhe
Confidence 355678899999999999875544 356667763 2 3334455 45567788888888888777
No 33
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=39.01 E-value=48 Score=25.91 Aligned_cols=36 Identities=11% Similarity=0.355 Sum_probs=29.6
Q ss_pred hcHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCc
Q 016810 163 LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (382)
Q Consensus 163 lqPel~~Iqekyk~d~ek~q~E~~~LyKe~gvnPl~ 198 (382)
..|++++++++|++-.+.++....++-+++|++.++
T Consensus 2 ~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk 37 (92)
T PF05190_consen 2 FDEELDELREEYEEIEEELEELLEEIRKKLGIPSLK 37 (92)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 358999999999998888888888999999986554
No 34
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=38.72 E-value=2.9e+02 Score=25.97 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q 016810 133 FAIILLTVIVKVATFPLTK 151 (382)
Q Consensus 133 ~aIillTliVRlillPL~i 151 (382)
++.+++.++++-+++|...
T Consensus 61 I~FliL~~lL~k~~~~pI~ 79 (204)
T PRK09174 61 ITFGLFYLFMSRVILPRIG 79 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666543
No 35
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.72 E-value=1.4e+02 Score=31.02 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcHHHHHH--HHHhhh--CHH--HHHHHHHHHHHHcCCCCCcC
Q 016810 131 YGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAI--QQRYAG--NQE--RIQLETSRLYRQAGVNPLAG 199 (382)
Q Consensus 131 wg~aIillTliVRlillPL~ikq~rs~~km~~lqPel~~I--qekyk~--d~e--k~q~E~~~LyKe~gvnPl~g 199 (382)
...|+|+..++...+-+|+.+..+..-+--+.-+|--.++ +|.|+. +.| +.-.|.++.-++-++++|+-
T Consensus 277 ~a~A~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~rRlLtEeEYeeQaeveT~kaLaeLReycnkpd~~~Wkv 351 (452)
T KOG3817|consen 277 AAIAAIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKRRLLTEEEYEEQAEVETSKALAELREYCNKPDCKQWKV 351 (452)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Confidence 5567788888888899999876544332222233322222 455654 222 34467888889999999874
No 36
>PF05752 Calici_MSP: Calicivirus minor structural protein; InterPro: IPR008437 This family consists of minor structural proteins largely from the Caliciviridaei family of viruses, including Sapporo virus (Hu/Chiba/041413/2004/JP) and Sapporo virus (Hu/Ehime/04-1680/2004/JP). These viruses cause gastroenteritis. The function of this family is unknown.
Probab=34.10 E-value=91 Score=28.82 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCC
Q 016810 152 KQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVN 195 (382)
Q Consensus 152 kq~rs~~km~~lqPel~~Iqekyk~d~ek~q~E~~~LyKe~gvn 195 (382)
-++..+.|+-+++-+-.+|++++-+.+|+++++.+++-++--+|
T Consensus 22 snIV~qqrqv~~~~~Qn~lqq~w~~kqe~Lq~~~~dls~~La~n 65 (167)
T PF05752_consen 22 SNIVAQQRQVDQLEKQNQLQQQWMNKQEQLQRRQQDLSRDLAVN 65 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555666666667778888888888888988888888777666
No 37
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=31.72 E-value=6.1e+02 Score=26.41 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHh--hhhhhHhHHHHHHhhHHHHHHHHHH
Q 016810 271 AYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFS--LSVPSGLSIYWFTNNVLSTAQQVWL 343 (382)
Q Consensus 271 py~ILPIL~~~s~~ls~~l~~~~~~~~~~qk~~k~m~~~mPlmi~~f~--~~~PagL~LYWitSnl~siiQ~~il 343 (382)
.|.++-.++.-+......... +.-+.....|.-++|+.+...+ -..-+|..+|=+.=.+..+.++++.
T Consensus 133 ~Ylvli~i~l~sF~~~~~~a~-----~~I~~m~~FM~al~P~~~~lva~sGg~~SAa~f~p~il~~i~~~~~li~ 202 (381)
T TIGR02829 133 CYMVLIIIALKSFHVAMSYAK-----EAIESMVDFMLALLPLLLALLASSGGVTSAAFFDPVILFSINTTGKVIT 202 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665555554444444322 1122223345557788765433 3566666666444444444444433
No 38
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=30.88 E-value=3.7e+02 Score=25.11 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHcCCCC
Q 016810 166 KIKAIQQRYAGNQERIQLETSRLYRQAGVNP 196 (382)
Q Consensus 166 el~~Iqekyk~d~ek~q~E~~~LyKe~gvnP 196 (382)
|+++-+.+..+++|+-.+|+.++|++.|+.+
T Consensus 66 e~~re~~e~~~~pe~e~~el~~iy~~~Gl~~ 96 (213)
T PF01988_consen 66 EREREEWELENNPEEEKEELVEIYRAKGLSE 96 (213)
T ss_pred HhHHHHHHHHhChHhHHHHHHHHHHHCCCCH
Confidence 4444445556677777778888999888765
No 39
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=30.22 E-value=1.4e+02 Score=29.49 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=31.6
Q ss_pred HHHHHHh------hcHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHH
Q 016810 156 STLAMQN------LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALS 218 (382)
Q Consensus 156 s~~km~~------lqPel~~Iqekyk~d~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr 218 (382)
+-+|||. +-|.+ +|-|++|+|++++.+++=..=+|++|.- .|+..|+--++.
T Consensus 23 NyErmQ~~gf~~~m~P~L---~KlY~~d~e~~~~Alkrhl~fFNT~p~~--------~~~I~Gi~~amE 80 (271)
T TIGR00828 23 NFERMQALGFCYAMIPAI---KKLYPDDKAGRSAALKRHLEFFNTHPNL--------VGPIMGVTAAME 80 (271)
T ss_pred cHHHHhhHhHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHCCCchh--------hhHHHHHHHHHH
Confidence 3455554 34544 4468778777766666655568888853 334456665654
No 40
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=30.07 E-value=1.4e+02 Score=29.42 Aligned_cols=29 Identities=7% Similarity=0.153 Sum_probs=21.6
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHcCCCCCc
Q 016810 170 IQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (382)
Q Consensus 170 Iqekyk~d~ek~q~E~~~LyKe~gvnPl~ 198 (382)
++|-|++|+|++++.+++=.+=+|++|.-
T Consensus 42 L~KlY~~~~e~~~~Al~rHl~ffNT~p~~ 70 (263)
T PRK09855 42 LKKIYKDDKPGLSAAMKDNLEFINTHPNL 70 (263)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCCchh
Confidence 44568888888777777766678999853
No 41
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.98 E-value=2.8e+02 Score=25.33 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 016810 132 GFAIILLTVIVKVATFP 148 (382)
Q Consensus 132 g~aIillTliVRlillP 148 (382)
|+++.+.-++-|+..+=
T Consensus 108 Gf~LfL~l~I~r~~~li 124 (192)
T PF05529_consen 108 GFALFLSLVIRRVHSLI 124 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666666655443
No 42
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=27.52 E-value=2.5e+02 Score=31.00 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=12.7
Q ss_pred HHHHHHhhh---CHH---HHHHHHHHHHHH
Q 016810 168 KAIQQRYAG---NQE---RIQLETSRLYRQ 191 (382)
Q Consensus 168 ~~Iqekyk~---d~e---k~q~E~~~LyKe 191 (382)
+|+|++||+ ||| |.+|.++++.++
T Consensus 481 qEvK~E~Ke~EGdP~iK~r~R~~~re~~~~ 510 (609)
T PRK12772 481 QEVKEEYKQDEGDPQIKAKIKQKQREMAMQ 510 (609)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 466667764 775 333334444443
No 43
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=27.29 E-value=1.7e+02 Score=25.75 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHc
Q 016810 181 IQLETSRLYRQA 192 (382)
Q Consensus 181 ~q~E~~~LyKe~ 192 (382)
.-+++.++.|+.
T Consensus 69 ~~~~l~~LLKr~ 80 (146)
T PF14316_consen 69 WLAALNELLKRV 80 (146)
T ss_pred HHHHHHHHHHHH
Confidence 334455555543
No 44
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=27.12 E-value=3e+02 Score=28.02 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=12.7
Q ss_pred HHHHHHhh---hCHH---HHHHHHHHHHHH
Q 016810 168 KAIQQRYA---GNQE---RIQLETSRLYRQ 191 (382)
Q Consensus 168 ~~Iqekyk---~d~e---k~q~E~~~LyKe 191 (382)
+|++++|| |||| +.++.++++.++
T Consensus 217 qEvKdE~Ke~EGdP~iK~r~R~~~re~~~~ 246 (342)
T TIGR01404 217 DEVKREYKEQEGDPEIKSKRRELHQEILSE 246 (342)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 45666666 4875 334444444444
No 45
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=26.91 E-value=2.7e+02 Score=23.57 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=21.5
Q ss_pred HHHHHHHHHHH-HHhhhhhHHH------HHHHHHHHhhcHHHHHHHHHhhh
Q 016810 133 FAIILLTVIVK-VATFPLTKKQ------VESTLAMQNLQPKIKAIQQRYAG 176 (382)
Q Consensus 133 ~aIillTliVR-lillPL~ikq------~rs~~km~~lqPel~~Iqekyk~ 176 (382)
+.+.++++++= ++++|+.... .+...-..-.+-++.++.+...+
T Consensus 4 l~~a~l~~~a~~~v~~pl~r~~~~~~~~~~~~~n~~iyr~qL~ELe~d~~~ 54 (117)
T TIGR03142 4 IVAALLTLVALLFLLLPLLRRRRAAATVDRDELNLAVYRDRLAELERDLAE 54 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333343333 5556775421 11122334467778888666543
No 46
>PRK12495 hypothetical protein; Provisional
Probab=25.59 E-value=88 Score=30.22 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhCHHHHH--HHHHHHHHHcCCCCCcCc
Q 016810 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVNPLAGC 200 (382)
Q Consensus 166 el~~Iqekyk~d~ek~q--~E~~~LyKe~gvnPl~gc 200 (382)
|-++|+|||..|+++.+ +.|.+|..+...--..-|
T Consensus 9 EREkLREKye~d~~~R~~~~~ma~lL~~gatmsa~hC 45 (226)
T PRK12495 9 EREKLREKYEQDEQKREATERMSELLLQGATMTNAHC 45 (226)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchhhc
Confidence 45689999998876533 456666665543322344
No 47
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=25.08 E-value=1.1e+02 Score=28.86 Aligned_cols=39 Identities=13% Similarity=0.335 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHhhhC-----HHHHHHHHHHHHHH
Q 016810 153 QVESTLAMQNLQPKIKAIQQRYAGN-----QERIQLETSRLYRQ 191 (382)
Q Consensus 153 q~rs~~km~~lqPel~~Iqekyk~d-----~ek~q~E~~~LyKe 191 (382)
......++.+++-|+++++++.+.. +.+++.|++++.+|
T Consensus 177 ~~~~~~~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~~e 220 (221)
T PF14335_consen 177 RIERLEQIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLKKE 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 3445677888999999999998763 33677888888775
No 48
>PRK12722 transcriptional activator FlhC; Provisional
Probab=24.86 E-value=3.8e+02 Score=25.21 Aligned_cols=37 Identities=30% Similarity=0.509 Sum_probs=27.1
Q ss_pred HHHHHHHHHc-CCCCCcCchHH----------HHHHHHHHHHHHHHHh
Q 016810 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (382)
Q Consensus 183 ~E~~~LyKe~-gvnPl~gclp~----------LiQiPIfi~ly~aLr~ 219 (382)
.++.+||||- |.+|=+|.+|. =++--+|+.+|+.+..
T Consensus 38 ~rl~~Lyke~~G~spPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (187)
T PRK12722 38 ERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIYQFLLK 85 (187)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcccchhhHHHHHHHHHHHHHH
Confidence 4467899998 99998998882 2455567777777664
No 49
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=24.24 E-value=48 Score=25.89 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCC-CcCchHHHHHHHH----HHHHHHHHHhh
Q 016810 181 IQLETSRLYRQAGVNP-LAGCLPTLATIPV----WIGLYQALSNV 220 (382)
Q Consensus 181 ~q~E~~~LyKe~gvnP-l~gclp~LiQiPI----fi~ly~aLr~m 220 (382)
..+-.+++||++|+.- ++|+.+.++.... .+++|..+++.
T Consensus 46 ~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (95)
T PF00153_consen 46 VWQCLRKIYKEEGIRGLYRGFGPSLLRSIPYTAIYFGLYEYLKRL 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455788999998775 4688776664443 44444444443
No 50
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=24.11 E-value=2.1e+02 Score=28.52 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHH
Q 016810 170 IQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALS 218 (382)
Q Consensus 170 Iqekyk~d~ek~q~E~~~LyKe~gvnPl~gclp~LiQiPIfi~ly~aLr 218 (382)
++|-|++|+|+.++.+++=.+=+|++|.- .|+..|+--++.
T Consensus 50 LkKlY~~d~e~~~~Al~Rhl~fFNT~p~~--------~~~I~Gi~~amE 90 (282)
T PRK11103 50 IRRLYPENNEARKQAIKRHLEFFNTHPYV--------AAPILGVTLAME 90 (282)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCCchh--------hhHHHHHHHHHH
Confidence 44468788877776676666668888852 334456666655
No 51
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=23.16 E-value=2.5e+02 Score=26.64 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHhhcHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCC
Q 016810 147 FPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVN 195 (382)
Q Consensus 147 lPL~ikq~rs~~km~~lqPel~~Iqekyk~d~ek~q~E~~~LyKe~gvn 195 (382)
+|.--..+.....++.|+-|++++++|..+. +.+.+..-=|+++||++
T Consensus 114 ~p~L~vA~srf~~~~~L~~el~~~k~~L~~r-K~ierAKglLM~~~g~s 161 (194)
T COG3707 114 LPILDVAVSRFEERRALRRELAKLKDRLEER-KVIERAKGLLMKRRGLS 161 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCC
Confidence 3444445666777788888999998888773 34455555688888776
No 52
>PRK08156 type III secretion system protein SpaS; Validated
Probab=22.99 E-value=3.9e+02 Score=27.62 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=12.4
Q ss_pred HHHHHHhh---hCHH---HHHHHHHHHHHH
Q 016810 168 KAIQQRYA---GNQE---RIQLETSRLYRQ 191 (382)
Q Consensus 168 ~~Iqekyk---~d~e---k~q~E~~~LyKe 191 (382)
+|++++|| |||+ +.++.++++.++
T Consensus 213 qEvKdE~Ke~EGdP~iK~r~R~~~re~a~~ 242 (361)
T PRK08156 213 QEVKREYKEQEGNPEIKSKRREAHQEILSE 242 (361)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 46666776 4775 333334444433
No 53
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=22.68 E-value=2.3e+02 Score=28.96 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=19.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhhh---CHH
Q 016810 141 IVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (382)
Q Consensus 141 iVRlillPL~ikq~rs~~km~~lqPel~~Iqekyk~---d~e 179 (382)
++=++=++...++.....||. -+|++++||+ ||+
T Consensus 196 via~~D~~~qr~~~~k~lrMs-----kqEVKdE~K~~EGdP~ 232 (347)
T TIGR00328 196 VIAVFDYFFQRWQYIKSLKMT-----KQEVKDELKQSEGDPE 232 (347)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHhccCCHH
Confidence 333444555556655555553 3466667764 775
No 54
>PRK12860 transcriptional activator FlhC; Provisional
Probab=22.22 E-value=4.1e+02 Score=25.06 Aligned_cols=37 Identities=32% Similarity=0.537 Sum_probs=27.7
Q ss_pred HHHHHHHHHc-CCCCCcCchHH----------HHHHHHHHHHHHHHHh
Q 016810 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (382)
Q Consensus 183 ~E~~~LyKe~-gvnPl~gclp~----------LiQiPIfi~ly~aLr~ 219 (382)
.++.+||||- |.+|=+|.+|. =++--+|+.+|+.+.+
T Consensus 38 ~rl~~Lyke~~G~SpPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (189)
T PRK12860 38 DRLIRLYKEVRGVSPPKGMLPFSTDWFMTWLANIHASLFYNAYRFLKN 85 (189)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcCchhhhHHHHHHHHHHHHHh
Confidence 4568899998 99998998883 2555677777777664
No 55
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=22.14 E-value=2.6e+02 Score=28.60 Aligned_cols=31 Identities=19% Similarity=0.498 Sum_probs=17.5
Q ss_pred HHhhhhhHHHHHHHHHHHhhcHHHHHHHHHhh---hCHH
Q 016810 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYA---GNQE 179 (382)
Q Consensus 144 lillPL~ikq~rs~~km~~lqPel~~Iqekyk---~d~e 179 (382)
++=+++..++.....||. -+|++++|| ||||
T Consensus 199 ~~D~~~qr~~~~k~lkMs-----kqEvKdE~Ke~EGdP~ 232 (349)
T PRK12721 199 ILDYSFQRYKIMKQLKMS-----KDDVKQEYKDSEGDPE 232 (349)
T ss_pred HHHHHHHHHHHHHHCCCC-----HHHHHHHHHhccCCHH
Confidence 344555555555555553 246666776 4775
No 56
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=21.99 E-value=1.8e+02 Score=27.43 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH
Q 016810 131 YGFAIILLTVIV 142 (382)
Q Consensus 131 wg~aIillTliV 142 (382)
|||-|++.+|++
T Consensus 36 yGWyil~~~I~l 47 (190)
T PF06936_consen 36 YGWYILFGCILL 47 (190)
T ss_dssp ------------
T ss_pred hCHHHHHHHHHH
Confidence 444444444444
No 57
>COG4879 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.53 E-value=2.6e+02 Score=26.79 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcCchH
Q 016810 177 NQERIQLETSRLYRQAGVNPLAGCLP 202 (382)
Q Consensus 177 d~ek~q~E~~~LyKe~gvnPl~gclp 202 (382)
+++..-.+++..|++.|+.|++|+-+
T Consensus 30 sRe~~ieilk~vY~~~~IkPfrG~n~ 55 (243)
T COG4879 30 SRESLIEILKTVYKERGIKPFRGLNK 55 (243)
T ss_pred hHHHHHHHHHHHHHHcCCCcccCCCc
Confidence 45666678899999999999999543
No 58
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.76 E-value=3.6e+02 Score=20.04 Aligned_cols=22 Identities=9% Similarity=0.320 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHh
Q 016810 153 QVESTLAMQNLQPKIKAIQQRY 174 (382)
Q Consensus 153 q~rs~~km~~lqPel~~Iqeky 174 (382)
..+..++.++++.++++.+++.
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666665543
Done!