Query 016810
Match_columns 382
No_of_seqs 180 out of 1421
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:10:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3blc_A Inner membrane protein 25.4 1.9 6.6E-05 41.6 -6.3 22 100-121 305-326 (330)
2 1v54_D Cytochrome C oxidase su 23.6 26 0.00091 30.4 1.3 32 161-192 31-63 (147)
3 2y69_D Cytochrome C oxidase su 19.3 48 0.0016 29.4 2.0 31 162-192 54-85 (169)
4 1e91_A Paired amphipathic heli 16.5 1.5E+02 0.0052 22.8 4.2 30 166-195 13-44 (85)
5 1g1e_B SIN3A; four-helix bundl 16.5 1.3E+02 0.0045 23.4 3.8 27 166-192 16-44 (89)
6 3vou_A ION transport 2 domain 15.6 2.3E+02 0.0079 23.4 5.5 14 183-196 130-143 (148)
7 2kmu_A ATP-dependent DNA helic 15.4 59 0.002 23.6 1.4 37 157-193 3-48 (56)
8 1w8x_P Protein P16, protein S, 15.2 2.3E+02 0.0077 22.5 4.8 36 326-361 6-41 (117)
9 2cr7_A Paired amphipathic heli 14.7 1.4E+02 0.0049 22.7 3.6 29 167-195 17-47 (80)
10 3mq7_A Bone marrow stromal ant 13.8 4.2E+02 0.014 22.1 6.2 24 153-176 66-89 (121)
No 1
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12}
Probab=25.37 E-value=1.9 Score=41.64 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=16.7
Q ss_pred CCCchHHHHHHHHHHHHHHHhh
Q 016810 100 NGGWFGFISEAMEFVLKILKDG 121 (382)
Q Consensus 100 ~~gw~~~i~~pl~~vL~~l~~~ 121 (382)
++|||.+|+.||.++|+++|+.
T Consensus 305 DyGW~~fiakPlF~lL~~l~~~ 326 (330)
T 3blc_A 305 DYGWLWFISQPLLVPRGSLEHH 326 (330)
T ss_dssp HHHHHHHHTSCCCCCCCC----
T ss_pred cccCHHHHHHHHHHHHHHhhhh
Confidence 3799999999999999999875
No 2
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=23.61 E-value=26 Score=30.38 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=23.7
Q ss_pred HhhcHHHHHHHHHhhhCHHHH-HHHHHHHHHHc
Q 016810 161 QNLQPKIKAIQQRYAGNQERI-QLETSRLYRQA 192 (382)
Q Consensus 161 ~~lqPel~~Iqekyk~d~ek~-q~E~~~LyKe~ 192 (382)
++|.|++.++++|.|+|-.++ .+|.+++|+-.
T Consensus 31 ~~lt~~i~aLreKeKgdWk~LT~eEKkAlYris 63 (147)
T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYRLK 63 (147)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHH
Confidence 346899999999999985554 35667777643
No 3
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=19.34 E-value=48 Score=29.41 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=23.1
Q ss_pred hhcHHHHHHHHHhhhCHHHH-HHHHHHHHHHc
Q 016810 162 NLQPKIKAIQQRYAGNQERI-QLETSRLYRQA 192 (382)
Q Consensus 162 ~lqPel~~Iqekyk~d~ek~-q~E~~~LyKe~ 192 (382)
++.|++++++||.|+|-.++ .+|.+++|+-.
T Consensus 54 ~~t~~i~aLreKEKgdWk~LT~eEKKAlYriS 85 (169)
T 2y69_D 54 NLSASQKALKEKEKASWSSLSIDEKVELYRLK 85 (169)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHH
Confidence 46899999999999985554 35667777643
No 4
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=16.52 E-value=1.5e+02 Score=22.83 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhCHHHHH--HHHHHHHHHcCCC
Q 016810 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (382)
Q Consensus 166 el~~Iqekyk~d~ek~q--~E~~~LyKe~gvn 195 (382)
=++++++++.++++..+ .++++-||+..++
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d 44 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLH 44 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHcccc
Confidence 36788999999888655 5788899988765
No 5
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=16.48 E-value=1.3e+02 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhCHHHHH--HHHHHHHHHc
Q 016810 166 KIKAIQQRYAGNQERIQ--LETSRLYRQA 192 (382)
Q Consensus 166 el~~Iqekyk~d~ek~q--~E~~~LyKe~ 192 (382)
=++++++++.+++++.+ .++++-|++.
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~ 44 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKE 44 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhc
Confidence 35788899999887654 4666666654
No 6
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=15.61 E-value=2.3e+02 Score=23.40 Aligned_cols=14 Identities=0% Similarity=-0.111 Sum_probs=7.8
Q ss_pred HHHHHHHHHcCCCC
Q 016810 183 LETSRLYRQAGVNP 196 (382)
Q Consensus 183 ~E~~~LyKe~gvnP 196 (382)
++..+..++++..+
T Consensus 130 ~~i~~~~~~~~~~~ 143 (148)
T 3vou_A 130 EAIEKKLAEHSRQG 143 (148)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHhcCCCc
Confidence 44556666666543
No 7
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=15.37 E-value=59 Score=23.64 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=24.5
Q ss_pred HHHHHhhcHHHHHHHHHhhh------CHHHH--H-HHHHHHHHHcC
Q 016810 157 TLAMQNLQPKIKAIQQRYAG------NQERI--Q-LETSRLYRQAG 193 (382)
Q Consensus 157 ~~km~~lqPel~~Iqekyk~------d~ek~--q-~E~~~LyKe~g 193 (382)
+.+...++-+|+.....++. +++.+ . .|+.++||+|.
T Consensus 3 me~~~~lk~~LK~WE~~F~~~~GRkP~k~DIk~~p~~I~~~YK~Y~ 48 (56)
T 2kmu_A 3 MERLRDVRERLQAWERAFRRQRGRRPSQDDVEAAPEETRALYREYR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHcCHHHHHHHHHHHH
Confidence 55677788888888777653 23322 2 34888998873
No 8
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=15.22 E-value=2.3e+02 Score=22.51 Aligned_cols=36 Identities=14% Similarity=0.356 Sum_probs=25.8
Q ss_pred HHHHHHhhHHHHHHHHHHHhhCCCCCcccccchhhh
Q 016810 326 SIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEII 361 (382)
Q Consensus 326 ~LYWitSnl~siiQ~~ilr~~~~~~~~~~~~~~~~~ 361 (382)
.+||+-..+.-++--+++|+.-.++..-+-|+-+-+
T Consensus 6 llywvggglvliliwlwfrnrpaaqvasnwegppym 41 (117)
T 1w8x_P 6 LLYWVGGGLVLILIWLWFRNRPAAQVASNWEGPPYM 41 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCSCSSCTTCCCCTT
T ss_pred eEeEecCchhhHHHHHHHccChHHHHhhcCCCCCcc
Confidence 489999999999999999987665544333333333
No 9
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=14.75 E-value=1.4e+02 Score=22.72 Aligned_cols=29 Identities=10% Similarity=0.430 Sum_probs=19.8
Q ss_pred HHHHHHHhhhCHHHHH--HHHHHHHHHcCCC
Q 016810 167 IKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (382)
Q Consensus 167 l~~Iqekyk~d~ek~q--~E~~~LyKe~gvn 195 (382)
++++++++.++++... .++++-||+..++
T Consensus 17 l~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~ 47 (80)
T 2cr7_A 17 LDQVKIRFGSDPATYNGFLEIMKEFKSQSID 47 (80)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHhcCCC
Confidence 5788888888776554 4666777766543
No 10
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=13.78 E-value=4.2e+02 Score=22.07 Aligned_cols=24 Identities=8% Similarity=0.317 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHhhh
Q 016810 153 QVESTLAMQNLQPKIKAIQQRYAG 176 (382)
Q Consensus 153 q~rs~~km~~lqPel~~Iqekyk~ 176 (382)
......++++++-||+.+.++.++
T Consensus 66 kaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 66 KAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333467888899999888887776
Done!