Query 016810
Match_columns 382
No_of_seqs 180 out of 1421
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 04:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016810.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016810hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 36.7 35 0.0026 27.7 6.5 37 183-219 34-81 (156)
2 d1v54d_ f.23.1.1 (D:) Mitochon 21.8 16 0.0011 29.6 1.5 32 161-192 28-60 (144)
3 d2hepa1 a.2.21.1 (A:1-42) Hypo 15.0 87 0.0063 19.9 3.7 27 166-192 6-37 (42)
4 d1lvaa3 a.4.5.35 (A:511-574) C 13.6 52 0.0038 22.3 2.5 22 176-197 3-24 (64)
5 d2e50a1 d.305.1.1 (A:1-222) Pr 12.3 1.4E+02 0.01 24.8 5.6 26 152-177 27-52 (222)
6 d1ryka_ a.60.11.1 (A:) Hypothe 11.2 99 0.0072 21.3 3.4 27 167-193 40-66 (69)
7 d1qopb_ c.79.1.1 (B:) Tryptoph 9.3 1.1E+02 0.008 27.5 3.9 33 163-196 20-55 (390)
8 d1qh8b_ c.92.2.3 (B:) Nitrogen 8.8 1.3E+02 0.0092 28.3 4.3 16 187-202 48-70 (519)
9 d1io1a_ e.32.1.1 (A:) Phase 1 8.3 1.4E+02 0.01 24.7 4.0 33 160-192 26-67 (395)
10 d2gf5a1 a.77.1.2 (A:89-191) FA 8.1 2E+02 0.014 20.3 4.3 37 159-195 30-67 (103)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=36.67 E-value=35 Score=27.69 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=28.2
Q ss_pred HHHHHHHHH-cCCCCCcCchH----------HHHHHHHHHHHHHHHHh
Q 016810 183 LETSRLYRQ-AGVNPLAGCLP----------TLATIPVWIGLYQALSN 219 (382)
Q Consensus 183 ~E~~~LyKe-~gvnPl~gclp----------~LiQiPIfi~ly~aLr~ 219 (382)
.++.+|||| +|.+|-+|.+| .-++--+|+.+|+-+.+
T Consensus 34 ~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~ 81 (156)
T d2avue1 34 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 81 (156)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHh
Confidence 457899998 88999999887 23566678888877764
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.79 E-value=16 Score=29.64 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=24.6
Q ss_pred HhhcHHHHHHHHHhhhCHHHH-HHHHHHHHHHc
Q 016810 161 QNLQPKIKAIQQRYAGNQERI-QLETSRLYRQA 192 (382)
Q Consensus 161 ~~lqPel~~Iqekyk~d~ek~-q~E~~~LyKe~ 192 (382)
+++.|++++++||.|+|-.++ .+|.++||+-.
T Consensus 28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYris 60 (144)
T d1v54d_ 28 KNLSASQKALKEKEKASWSSLSIDEKVELYRLK 60 (144)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhCChhhcCHHHHHHHHHHH
Confidence 567899999999999985554 36677888644
No 3
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=14.95 E-value=87 Score=19.93 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhCH-----HHHHHHHHHHHHHc
Q 016810 166 KIKAIQQRYAGNQ-----ERIQLETSRLYRQA 192 (382)
Q Consensus 166 el~~Iqekyk~d~-----ek~q~E~~~LyKe~ 192 (382)
+|+.|.+-++..+ ++-.+|+++|.++|
T Consensus 6 ~i~RINeLakK~K~~gLT~~E~~EQ~~LR~eY 37 (42)
T d2hepa1 6 KIARINELAAKAKAGVITEEEKAEQQKLRQEY 37 (42)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 4555555554311 12235667777766
No 4
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=13.61 E-value=52 Score=22.26 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=18.5
Q ss_pred hCHHHHHHHHHHHHHHcCCCCC
Q 016810 176 GNQERIQLETSRLYRQAGVNPL 197 (382)
Q Consensus 176 ~d~ek~q~E~~~LyKe~gvnPl 197 (382)
.|++++.+.+..+|++.|..|.
T Consensus 3 ~~q~~l~~~I~~~~~~~g~~PP 24 (64)
T d1lvaa3 3 ETQKKLLKDLEDKYRVSRWQPP 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 3567888899999999999984
No 5
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.34 E-value=1.4e+02 Score=24.82 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHhhhC
Q 016810 152 KQVESTLAMQNLQPKIKAIQQRYAGN 177 (382)
Q Consensus 152 kq~rs~~km~~lqPel~~Iqekyk~d 177 (382)
.+++...+++.+|-++.++++++...
T Consensus 27 ~~~~~i~~L~~iQ~e~~~l~~e~~~e 52 (222)
T d2e50a1 27 EQQEAIEHIDEVQNEIDRLNEQASEE 52 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888888887776553
No 6
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=11.16 E-value=99 Score=21.32 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.4
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHcC
Q 016810 167 IKAIQQRYAGNQERIQLETSRLYRQAG 193 (382)
Q Consensus 167 l~~Iqekyk~d~ek~q~E~~~LyKe~g 193 (382)
.-++|++|...+++.+++..++.++|.
T Consensus 40 ~Gk~Q~~yG~~kd~a~~~v~~~~~r~~ 66 (69)
T d1ryka_ 40 VGKIQERYGYQKDQAEKEVVDWETRNE 66 (69)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 346788998888899999999988875
No 7
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=9.29 E-value=1.1e+02 Score=27.48 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=22.3
Q ss_pred hcHHHHHHHHHhh---hCHHHHHHHHHHHHHHcCCCC
Q 016810 163 LQPKIKAIQQRYA---GNQERIQLETSRLYRQAGVNP 196 (382)
Q Consensus 163 lqPel~~Iqekyk---~d~ek~q~E~~~LyKe~gvnP 196 (382)
|.|-++++.+.|+ +|+ +.++|..++||.|--+|
T Consensus 20 l~~~~~~l~~~~~~~~~~~-~f~~e~~~~~~~~~grp 55 (390)
T d1qopb_ 20 LMPALNQLEEAFVSAQKDP-EFQAQFADLLKNYAGRP 55 (390)
T ss_dssp GHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHhcCCCC
Confidence 4555666666554 455 56678899999996554
No 8
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Klebsiella pneumoniae [TaxId: 573]}
Probab=8.77 E-value=1.3e+02 Score=28.33 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=13.0
Q ss_pred HHHHHcC-------CCCCcCchH
Q 016810 187 RLYRQAG-------VNPLAGCLP 202 (382)
Q Consensus 187 ~LyKe~g-------vnPl~gclp 202 (382)
.-|+|.| |||.++|-|
T Consensus 48 ~~~~~~n~~~~~l~vnP~k~Cqp 70 (519)
T d1qh8b_ 48 AEYEALNFRREALTVDPAKACQP 70 (519)
T ss_dssp HHHHHHHTTCSSCEESCSCCCHH
T ss_pred hhhhhhcccccCcccCccccchH
Confidence 5677777 799999976
No 9
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=8.35 E-value=1.4e+02 Score=24.74 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=18.1
Q ss_pred HHhhcHHHHHHHHHh---hh------CHHHHHHHHHHHHHHc
Q 016810 160 MQNLQPKIKAIQQRY---AG------NQERIQLETSRLYRQA 192 (382)
Q Consensus 160 m~~lqPel~~Iqeky---k~------d~ek~q~E~~~LyKe~ 192 (382)
|.++.--|+++||.. .+ |++.+|.|..+|.+|-
T Consensus 26 l~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei 67 (395)
T d1io1a_ 26 LNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEI 67 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444555555543 11 5666777776666553
No 10
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.10 E-value=2e+02 Score=20.30 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=25.2
Q ss_pred HHHhhcHHHHHHHHHhhhC-HHHHHHHHHHHHHHcCCC
Q 016810 159 AMQNLQPKIKAIQQRYAGN-QERIQLETSRLYRQAGVN 195 (382)
Q Consensus 159 km~~lqPel~~Iqekyk~d-~ek~q~E~~~LyKe~gvn 195 (382)
++.-=..+|+.|+.+|.+| +++..+-+..-++++|-+
T Consensus 30 ~Lgl~~~~I~~I~~~~~~~~~e~~~~mL~~W~~~~g~~ 67 (103)
T d2gf5a1 30 QLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKEN 67 (103)
T ss_dssp HTTCCHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTT
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3333457899999999876 556655566667777655
Done!