Your job contains 1 sequence.
>016811
MTEFAKRISECSEQASKIPEEKEEDHQNDSVEEEEEYPEEVPETRTVTEVMSTNKRIQRY
LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV
DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF
YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL
DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS
FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPEDD
QTDAAESLETCPDPVSRKRRLQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016811
(382 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2024397 - symbol:AT1G09800 species:3702 "Arabi... 854 1.4e-112 2
UNIPROTKB|F1RJE9 - symbol:PUSL1 "tRNA pseudouridine synth... 364 1.1e-42 2
TIGR_CMR|NSE_0020 - symbol:NSE_0020 "tRNA pseudouridine s... 324 2.0e-41 2
TIGR_CMR|SPO_3143 - symbol:SPO_3143 "tRNA pseudouridine s... 324 4.6e-40 2
TIGR_CMR|ECH_0622 - symbol:ECH_0622 "tRNA pseudouridine s... 305 5.1e-37 2
TIGR_CMR|APH_0502 - symbol:APH_0502 "tRNA pseudouridine s... 312 1.5e-35 2
DICTYBASE|DDB_G0283061 - symbol:DDB_G0283061 "tRNA pseudo... 358 8.5e-33 1
UNIPROTKB|A6QP68 - symbol:PUSL1 "tRNA pseudouridine synth... 358 8.5e-33 1
TIGR_CMR|DET_0504 - symbol:DET_0504 "tRNA pseudouridine s... 230 1.4e-32 2
UNIPROTKB|Q8N0Z8 - symbol:PUSL1 "tRNA pseudouridine synth... 348 9.8e-32 1
MGI|MGI:3047787 - symbol:Pusl1 "pseudouridylate synthase-... 343 3.3e-31 1
RGD|1559560 - symbol:Pusl1 "pseudouridylate synthase-like... 342 4.2e-31 1
UNIPROTKB|P07649 - symbol:truA "tRNA pseudouridine syntha... 247 2.6e-30 2
TIGR_CMR|CHY_2276 - symbol:CHY_2276 "tRNA pseudouridine s... 280 1.8e-29 2
TIGR_CMR|CBU_0892 - symbol:CBU_0892 "tRNA pseudouridine s... 245 3.7e-29 2
UNIPROTKB|F1PXJ5 - symbol:PUSL1 "tRNA pseudouridine synth... 322 5.6e-29 1
UNIPROTKB|P65846 - symbol:truA "tRNA pseudouridine syntha... 249 9.6e-29 2
UNIPROTKB|Q9KTA4 - symbol:truA "tRNA pseudouridine syntha... 236 1.9e-28 2
TIGR_CMR|VC_0999 - symbol:VC_0999 "tRNA pseudouridine syn... 236 1.9e-28 2
UNIPROTKB|J9P592 - symbol:PUSL1 "tRNA pseudouridine synth... 315 3.1e-28 1
TIGR_CMR|GSU_2877 - symbol:GSU_2877 "tRNA pseudouridine s... 228 8.6e-27 2
UNIPROTKB|F1LXZ7 - symbol:Pusl1 "tRNA pseudouridine synth... 271 1.4e-23 1
UNIPROTKB|E1BUI0 - symbol:PUSL1 "tRNA pseudouridine synth... 270 1.8e-23 1
FB|FBgn0083976 - symbol:CG34140 species:7227 "Drosophila ... 249 3.0e-21 1
TAIR|locus:2077552 - symbol:AT3G06950 species:3702 "Arabi... 188 1.4e-15 2
GENEDB_PFALCIPARUM|PFE0815w - symbol:PFE0815w "hypothetic... 106 5.3e-09 3
UNIPROTKB|Q8I3U5 - symbol:PFE0815w "tRNA pseudouridine sy... 106 5.3e-09 3
TIGR_CMR|CJE_0914 - symbol:CJE_0914 "tRNA pseudouridine s... 107 4.1e-05 2
POMBASE|SPAC25B8.05 - symbol:SPAC25B8.05 "tRNA-pseudourid... 114 4.1e-05 2
FB|FBgn0038811 - symbol:CG4159 species:7227 "Drosophila m... 98 4.3e-05 2
UNIPROTKB|J3KTG4 - symbol:PUSL1 "tRNA pseudouridine synth... 101 9.9e-05 1
SGD|S000001895 - symbol:DEG1 "tRNA:pseudouridine synthase... 107 0.00015 2
UNIPROTKB|F1P3X5 - symbol:PUS3 "tRNA pseudouridine syntha... 85 0.00015 3
CGD|CAL0000624 - symbol:orf19.6297 species:5476 "Candida ... 86 0.00031 3
WB|WBGene00004248 - symbol:pus-1 species:6239 "Caenorhabd... 84 0.00063 2
ASPGD|ASPL0000040109 - symbol:AN3170 species:162425 "Emer... 117 0.00067 3
>TAIR|locus:2024397 [details] [associations]
symbol:AT1G09800 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;TAS] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:RHYRYRI
IPI:IPI00517202 RefSeq:NP_172451.2 UniGene:At.477 UniGene:At.49869
ProteinModelPortal:F4I2L0 SMR:F4I2L0 PRIDE:F4I2L0
EnsemblPlants:AT1G09800.1 GeneID:837510 KEGG:ath:AT1G09800
Uniprot:F4I2L0
Length = 372
Score = 854 (305.7 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 162/225 (72%), Positives = 191/225 (84%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
N R+QRYL+A+EYIGTRFSGSQ+Q RTVVGVL+EAFHKFIGQPV I SSRTDAGVHA
Sbjct: 51 NPRVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHA 110
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ-SEGDIMVTDVRCVPSDFHARF 172
SNVCHVDVERISKRKPGEVLPPH+ VV+RAVNHFLQ +GD+MV DVRCVPS++HAR+
Sbjct: 111 LSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARY 170
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+AQERTYFYR+LSG +PLS+ EKDR WHV EEL+LR MQEAC+VLVG HDFSSFRA+GCQ
Sbjct: 171 KAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQ 230
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPN 277
A SP+R+LDEL+++EV ST F SI + + LS+++N L N
Sbjct: 231 AKSPMRSLDELNITEVPSTPYFPSITERT--LSNLNNGDPLACSN 273
Score = 277 (102.6 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 58/84 (69%), Positives = 65/84 (77%)
Query: 274 GMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK 333
G G S FG R++HR Y V AR+R FLYHQVRLIVG LK VGTGELTVSDVERIL+AK
Sbjct: 291 GSTEGDS--FGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAK 348
Query: 334 TVTAASPMAPACGLSLGFVKYDLP 357
TV+AA PMAPA GL L V+Y+ P
Sbjct: 349 TVSAAKPMAPASGLYLARVRYEFP 372
>UNIPROTKB|F1RJE9 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9823
"Sus scrofa" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:FP102596
Ensembl:ENSSSCT00000003707 Uniprot:F1RJE9
Length = 302
Score = 364 (133.2 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 89/203 (43%), Positives = 121/203 (59%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + PV ++SSRTDAGVHA
Sbjct: 13 RYLVYFQYLGTDFNGVAAVRGPQHAVGVQNYLEEAAERLNSVVPVKFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+D++R S G+ PP V+ A+N L+ I V VPS FHAR+ A
Sbjct: 73 SNAAHLDIQRRS----GQ--PPFSPEVLTEALNTHLRHPA-IRVLQAFRVPSHFHARYAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G P+ LSVFE++R W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLATGCPRPDHLSVFERNRCWPLRADCLDVAAMQEAAQHLLGTHDFSAFQSTG 185
Query: 231 CQANSPIRTLDELHVSEVVSTAL 253
A SP+RTL VS S+ L
Sbjct: 186 SPATSPVRTLRRASVSPEPSSPL 208
Score = 104 (41.7 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 266 SIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSD 325
S + SS L +P G S G+R +E ++SFLY QVR + VL AVG G LT +
Sbjct: 201 SPEPSSPLVLP-GESR--GLRFWSLEFE----SQSFLYRQVRRMTAVLVAVGLGALTPAQ 253
Query: 326 VERILKAKTVTAA--SPMAPACGLSLGFVKY-DL 356
V+ IL+++ S +APA GL L V Y DL
Sbjct: 254 VKMILESRDPLGRHQSRVAPAHGLFLKSVLYGDL 287
>TIGR_CMR|NSE_0020 [details] [associations]
symbol:NSE_0020 "tRNA pseudouridine synthase A"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
RefSeq:YP_505923.1 ProteinModelPortal:Q2GF33 STRING:Q2GF33
GeneID:3932291 KEGG:nse:NSE_0020 PATRIC:22680151
ProtClustDB:CLSK2528006 BioCyc:NSEN222891:GHFU-58-MONOMER
Uniprot:Q2GF33
Length = 243
Score = 324 (119.1 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 77/189 (40%), Positives = 112/189 (59%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY VEY+GT FSG QKQ++ +V LE + + ++++++ RTDAGVHA V
Sbjct: 2 RYKAIVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQVF 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D R S +P +++ AVN+ L+ E I++ + V F ARF A R
Sbjct: 62 HFDA-RESTLQPFQIV---------NAVNYHLK-EKLIVLLKIEIVDETFDARFSAIRRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y+I + PL+VF K+R+WHV + L+L ++E + LVG HDF SFR+S C A++ IR
Sbjct: 111 YQYKITNRKTPLAVF-KNRSWHVPQTLNLDLIREQAQYLVGKHDFQSFRSSKCGASNAIR 169
Query: 239 TLDELHVSE 247
TLD L V +
Sbjct: 170 TLDRLEVEK 178
Score = 132 (51.5 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 270 SSKLGMPNGGSNVFGIRKKHRSYEVI--ARARSFLYHQVRLIVGVLKAVGTGELTVSDVE 327
SSK G N + + + E+I A A+SFL+HQVR++VG L A+ +G+L V
Sbjct: 159 SSKCGASNAIRTLDRLEVEKNGEEMIFHASAKSFLHHQVRIMVGTLVAIASGKLM--SVT 216
Query: 328 RILKAKTVTAASPMAPACGLSLGFVKY 354
IL K A P AP CGL L V Y
Sbjct: 217 EILSKKNRRYAGPTAPPCGLYLLKVDY 243
>TIGR_CMR|SPO_3143 [details] [associations]
symbol:SPO_3143 "tRNA pseudouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
ProtClustDB:PRK00021 RefSeq:YP_168346.1 ProteinModelPortal:Q5LNR0
GeneID:3193303 KEGG:sil:SPO3143 PATRIC:23379731 Uniprot:Q5LNR0
Length = 262
Score = 324 (119.1 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 76/192 (39%), Positives = 107/192 (55%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY+GT F+G Q+Q + +V G +E A + P +I+ + RTDAGVH V
Sbjct: 3 RYALKVEYLGTPFAGWQRQKDLPSVQGAIETALARLEPGPHTIAAAGRTDAGVHGLGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D+ R D + A+N+ L+ + + +T V D+HARF A ER
Sbjct: 63 HCDLTR-----------DWDPFRLSEALNYHLKPQ-PVAITAAARVAEDWHARFSATERQ 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y +R+L P + + W V LD RAMQ A +L+G HDF++FR+S CQA SP++
Sbjct: 111 YLFRLLMRRAP-ATHDAGLVWQVGHRLDARAMQAAADLLLGRHDFTTFRSSICQAASPVK 169
Query: 239 TLDELHVSEVVS 250
TLDEL V V S
Sbjct: 170 TLDELRVEAVES 181
Score = 119 (46.9 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 28/61 (45%), Positives = 34/61 (55%)
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G DV L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWAPEDVRSALEARDRAACGPVCPPQGLYLARVGYPE 251
Query: 357 P 357
P
Sbjct: 252 P 252
>TIGR_CMR|ECH_0622 [details] [associations]
symbol:ECH_0622 "tRNA pseudouridine synthase A"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
RefSeq:YP_507432.1 ProteinModelPortal:Q2GGK1 STRING:Q2GGK1
GeneID:3927636 KEGG:ech:ECH_0622 PATRIC:20576696 OMA:YSINANR
BioCyc:ECHA205920:GJNR-624-MONOMER Uniprot:Q2GGK1
Length = 245
Score = 305 (112.4 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 71/188 (37%), Positives = 107/188 (56%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I +EY G+ F G QKQ + ++ +LE A KF Q ++ ++ RTDAGVHA V
Sbjct: 2 RYKITIEYNGSNFIGWQKQKHSSNSIQEILENAILKFSQQHTTVYVAGRTDAGVHALGQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ D+ VVR A+N+ L I + V FHARF A++R
Sbjct: 62 AHFDLTTNL-----------DTYVVRNAINYHLIPHA-IAILSVEKTDDKFHARFSAKKR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y+I++ PL++ + +RAW + L++ M +A + + G HDFSSFRA CQ+ +PI
Sbjct: 110 HYLYKIINRYSPLTI-DYNRAWLIHNPLNIENMIQAIEYIKGNHDFSSFRARHCQSKNPI 168
Query: 238 RTLDELHV 245
+T+D+L +
Sbjct: 169 KTIDDLKI 176
Score = 109 (43.4 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
++S + A SFL+HQVR+IVG L G + ++ ILKAK + A AP GL
Sbjct: 180 NQSINIHISAISFLHHQVRIIVGTLVECGKNNFSPEHIKNILKAKNRSYAGMTAPPYGLY 239
Query: 349 LGFVKYD 355
FVK D
Sbjct: 240 --FVKVD 244
>TIGR_CMR|APH_0502 [details] [associations]
symbol:APH_0502 "tRNA pseudouridine synthase A"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:YP_505097.1 ProteinModelPortal:Q2GKK4
STRING:Q2GKK4 GeneID:3931158 KEGG:aph:APH_0502 PATRIC:20949644
HOGENOM:HOG000248672 OMA:RHYRYRI ProtClustDB:PRK00021
BioCyc:APHA212042:GHPM-526-MONOMER Uniprot:Q2GKK4
Length = 246
Score = 312 (114.9 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 70/189 (37%), Positives = 110/189 (58%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNC--RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
RY VEY GT F G Q+Q ++V +E + +F Q V + + RTDAGVHA
Sbjct: 2 RYKAVVEYEGTSFIGWQRQHGVVGKSVQESIERSIKEFCQQSVIVYAAGRTDAGVHATGQ 61
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ ++S+ + V++ A+NH+L++E + + + V +FHARF A++
Sbjct: 62 VVHFDL-KVSR----------EDYVIKNALNHYLRNE-KVSILQLERVDEEFHARFSAKK 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y+I + PL + + R WHV + L++ M+EA +VG HDF+SFRA CQ+ S
Sbjct: 110 RHYTYKISNREAPLCI-DLMRMWHVPKRLNVENMREAASYIVGKHDFASFRAKDCQSKSS 168
Query: 237 IRTLDELHV 245
I+T+D + +
Sbjct: 169 IKTVDSIDI 177
Score = 88 (36.0 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+SFL+ QVR+ VG G G + V IL+ K AA APA GL L V Y
Sbjct: 190 AQSFLHKQVRITVGTFVECGMGLYPPAHVLEILEKKDRAAAGITAPAHGLYLTRVDY 246
>DICTYBASE|DDB_G0283061 [details] [associations]
symbol:DDB_G0283061 "tRNA pseudouridine synthase truA
family" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0283061 GO:GO:0003723 EMBL:AAFI02000049
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 RefSeq:XP_639285.1 ProteinModelPortal:Q54RR6
STRING:Q54RR6 EnsemblProtists:DDB0218427 GeneID:8623854
KEGG:ddi:DDB_G0283061 InParanoid:Q54RR6 OMA:SISHIKI
ProtClustDB:CLSZ2728984 Uniprot:Q54RR6
Length = 343
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 102/310 (32%), Positives = 157/310 (50%)
Query: 59 RYLIAVEYIGTRFSGSQK---QLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
RY I EYIG F+G Q+ + V VLE++ K G + I SSRTD GV A
Sbjct: 4 RYKIIYEYIGKSFTGFQRLKYPVVKLPVQQVLEDSLEKIHGYKIPIVGSSRTDHGVSAVG 63
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE--GDIMVTDVRCVPSDFHARFR 173
V H DV+ + K G +P + A+N+ + E I + V FH RF
Sbjct: 64 QVSHFDVKTRTS-KSGIEMPLLSPEELTMAINYNVGKEYLKSIRIIKTEIVDDKFHCRFN 122
Query: 174 AQERTYFYRILS--GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
A RTY YR+++ G + + + DR + V L+L M++A ++ +G HDFSSFR++ C
Sbjct: 123 ATSRTYLYRVMANCGRKQIPLELLDRVYLVGPILNLDEMRKASEMFIGTHDFSSFRSAKC 182
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
+ PIR++ + + ++ +F Q +P +I S+ P G + KK+
Sbjct: 183 SSTRPIRSISHIKIYDLPLPDIF----QYNPSFQNISRSNT-NYPIGDGEK-NLDKKNTG 236
Query: 292 YEVIA---RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
+ +AR+FL++QVR++V L VG GE+++ +E I K AA P A L+
Sbjct: 237 LQYFGIEIKARAFLHNQVRIMVASLIKVGEGEISIQQLEEIKDKKDRGAAPPTASPEPLT 296
Query: 349 LGFVKYDLPE 358
L V YD P+
Sbjct: 297 LLTVSYDDPK 306
>UNIPROTKB|A6QP68 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9913
"Bos taurus" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000248674 HOVERGEN:HBG053770
OMA:WALPADC OrthoDB:EOG4P5K9S GeneTree:ENSGT00510000048520
EMBL:DAAA02043243 EMBL:BC149176 IPI:IPI00698369 UniGene:Bt.62155
STRING:A6QP68 Ensembl:ENSBTAT00000044945 InParanoid:A6QP68
Uniprot:A6QP68
Length = 312
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 86/196 (43%), Positives = 116/196 (59%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + PV ++SSRTDAGVHA
Sbjct: 34 RYLVYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVMPVKFTISSRTDAGVHAL 93
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+D++R S LPP V+ A+N L+ I V VPS FHAR A
Sbjct: 94 SNAAHLDIQRRSD------LPPFSPEVLTEALNTHLKHPA-IRVLQAFRVPSHFHARHAA 146
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G P+ L VFE++R W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 147 ISRTYLYRLATGCPRPDRLPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAG 206
Query: 231 CQANSPIRTLDELHVS 246
A+SP+RTL VS
Sbjct: 207 SPASSPVRTLRRASVS 222
>TIGR_CMR|DET_0504 [details] [associations]
symbol:DET_0504 "tRNA pseudouridine synthase A"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:YSINANR
RefSeq:YP_181248.1 ProteinModelPortal:Q3Z951 STRING:Q3Z951
GeneID:3230211 KEGG:det:DET0504 PATRIC:21608077
ProtClustDB:CLSK837466 BioCyc:DETH243164:GJNF-504-MONOMER
Uniprot:Q3Z951
Length = 248
Score = 230 (86.0 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 66/182 (36%), Positives = 96/182 (52%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
L+ +EY GTR+SG Q Q T+ G LE A K + +S S RTDAGVHAA V
Sbjct: 2 LLVIEYEGTRYSGFQVQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQV--- 58
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
V +S+ G D ++ +N +L DI V +V V F R RA R Y
Sbjct: 59 -VSYLSESSLGL-----DK--IKGGLNFYLPP--DIAVKEVHFVAESFDVRRRAISREYS 108
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS-GCQANSPIRT 239
Y+IL+ + S + +AW V +LD++ M++A K+L G HDF +F +S G + +R
Sbjct: 109 YQILNS-KTRSPLARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASSLGPEIKKTVRR 167
Query: 240 LD 241
++
Sbjct: 168 VN 169
Score = 145 (56.1 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 33/74 (44%), Positives = 44/74 (59%)
Query: 284 GIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAP 343
GIR+ + + A SFL HQVR +G L +G G +++S+ E + +AKT A P AP
Sbjct: 174 GIREDRLIFNI--EANSFLTHQVRNTIGTLVELGRGTMSMSEFEALFEAKTPGLAGPAAP 231
Query: 344 ACGLSLGFVKYDLP 357
ACGLSL V Y P
Sbjct: 232 ACGLSLVRVNYREP 245
>UNIPROTKB|Q8N0Z8 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase-like 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 EMBL:AL139287
EMBL:CH471183 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 EMBL:AK075292 EMBL:AK298218
EMBL:BC034304 IPI:IPI00166125 IPI:IPI00915388 RefSeq:NP_699170.1
UniGene:Hs.400659 ProteinModelPortal:Q8N0Z8 SMR:Q8N0Z8
STRING:Q8N0Z8 PhosphoSite:Q8N0Z8 DMDM:52783232 PRIDE:Q8N0Z8
DNASU:126789 Ensembl:ENST00000379031 GeneID:126789 KEGG:hsa:126789
UCSC:uc001aed.3 UCSC:uc010nyi.2 CTD:126789 GeneCards:GC01P001233
HGNC:HGNC:26914 HPA:HPA032057 neXtProt:NX_Q8N0Z8
PharmGKB:PA134947837 HOGENOM:HOG000248674 HOVERGEN:HBG053770
InParanoid:Q8N0Z8 OMA:WALPADC OrthoDB:EOG4P5K9S PhylomeDB:Q8N0Z8
ChiTaRS:PUSL1 GenomeRNAi:126789 NextBio:81916 Bgee:Q8N0Z8
CleanEx:HS_PUSL1 Genevestigator:Q8N0Z8 GermOnline:ENSG00000169972
Uniprot:Q8N0Z8
Length = 303
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 86/196 (43%), Positives = 116/196 (59%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + +PV ++SSRTDAGVHA
Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S R P PP V+ A+N L+ I V VPSDFHAR A
Sbjct: 73 SNAAHLDVQRRSGRPP---FPPE---VLAEALNTHLRHPA-IRVLRAFRVPSDFHARHAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G + L VFE++ W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVS 246
SP+RTL + VS
Sbjct: 186 SPVPSPVRTLRRVSVS 201
>MGI|MGI:3047787 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10090
"Mus musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 MGI:MGI:3047787 GO:GO:0003723 GO:GO:0008033
EMBL:AL670236 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
UniGene:Mm.259270 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789
HOGENOM:HOG000248674 HOVERGEN:HBG053770 OMA:WALPADC
OrthoDB:EOG4P5K9S EMBL:AK151452 EMBL:AK160236 IPI:IPI00458175
IPI:IPI00626517 IPI:IPI00875388 RefSeq:NP_001028662.1
ProteinModelPortal:A2ADA5 SMR:A2ADA5 STRING:A2ADA5
PhosphoSite:A2ADA5 PaxDb:A2ADA5 PRIDE:A2ADA5
Ensembl:ENSMUST00000097737 GeneID:433813 KEGG:mmu:433813
UCSC:uc008wfi.1 UCSC:uc012drb.1 GeneTree:ENSGT00510000048520
InParanoid:A2ADA5 NextBio:409016 Bgee:A2ADA5 Genevestigator:A2ADA5
Uniprot:A2ADA5
Length = 291
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 84/196 (42%), Positives = 116/196 (59%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVL---EEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ ++Y+GT F+G VGVL EEA + PV ++SSRTDAGVHA
Sbjct: 13 RYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+D++R +PG+ P VV +A+N L+ I V VP+DFHAR A
Sbjct: 73 SNAAHLDIQR----RPGQ--SPFSPEVVAKALNTHLKHPA-IRVLKAFRVPNDFHARHAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHV-TEELDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G P L VFE++ W + TE LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVS 246
+ +RTL + VS
Sbjct: 186 SPVTNTVRTLRRVSVS 201
>RGD|1559560 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 RGD:1559560 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00779525 Ensembl:ENSRNOT00000055334 ArrayExpress:F1M9T7
Uniprot:F1M9T7
Length = 278
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 108/283 (38%), Positives = 151/283 (53%)
Query: 84 VGVLEEAFHKFIG-QPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVV 142
V L+EA + +PV ++SSRTDAGVHA SN H+D++R +PG PP +V
Sbjct: 6 VRFLQEAAKRLNSVEPVRFTISSRTDAGVHALSNAAHLDIQR----RPGR--PPFSPEIV 59
Query: 143 RRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRIL---SGPEPLSVFEKDRAW 199
+A+N L+ I V VP+DFHAR A RTY YR+ SGP L VFE++ W
Sbjct: 60 TKALNTHLKHPA-IRVLKAFRVPNDFHARHAATSRTYLYRLATGCSGPNQLPVFEQNVCW 118
Query: 200 HV-TEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSIN 258
+ TE LD+ AMQEA + L+G HDFS+F+++G +RTL + VS ++ LF +
Sbjct: 119 SLQTEYLDIAAMQEAAQHLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPAS-LFV-LP 176
Query: 259 QDSPVLS----SIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLK 314
Q+S L ++ S L G N +H + S L QVR + VL
Sbjct: 177 QESRRLQFWTLEFESQSFLYRQVGYLNPRMGSSRHCN-----DLSSLL--QVRRMTAVLV 229
Query: 315 AVGTGELTVSDVERILKAKTVTAA--SPMAPACGLSLGFVKYD 355
AVG G L + V+ IL+++ + +APA GL L V YD
Sbjct: 230 AVGLGILAPTQVKVILESQDPLGKYQARVAPAHGLFLKSVLYD 272
>UNIPROTKB|P07649 [details] [associations]
symbol:truA "tRNA pseudouridine synthase I" species:83333
"Escherichia coli K-12" [GO:0000049 "tRNA binding" evidence=IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:M68934
GO:GO:0000049 GO:GO:0009982 SUPFAM:SSF55120 EMBL:M15543 EMBL:X02743
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
EMBL:M15542 PIR:B23792 RefSeq:NP_416821.1 RefSeq:YP_490560.1
PDB:1DJ0 PDB:2NQP PDB:2NR0 PDB:2NRE PDBsum:1DJ0 PDBsum:2NQP
PDBsum:2NR0 PDBsum:2NRE ProteinModelPortal:P07649 SMR:P07649
DIP:DIP-11043N IntAct:P07649 MINT:MINT-1310146 PRIDE:P07649
EnsemblBacteria:EBESCT00000002191 EnsemblBacteria:EBESCT00000002192
EnsemblBacteria:EBESCT00000017099 GeneID:12932365 GeneID:946793
KEGG:ecj:Y75_p2284 KEGG:eco:b2318 PATRIC:32120007 EchoBASE:EB0449
EcoGene:EG10454 OMA:TPFRNVH BioCyc:EcoCyc:EG10454-MONOMER
BioCyc:ECOL316407:JW2315-MONOMER BioCyc:MetaCyc:EG10454-MONOMER
EvolutionaryTrace:P07649 Genevestigator:P07649 Uniprot:P07649
Length = 270
Score = 247 (92.0 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 70/198 (35%), Positives = 102/198 (51%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H + + K D++ VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVHFETTALRK----------DAAWTL-GVNANLP--GDIAVRWVKTVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKG-VTHFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVS 246
CQ+ +P R + ++V+
Sbjct: 167 VQCQSRTPWRNVMHINVT 184
Score = 103 (41.3 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 33/84 (39%), Positives = 44/84 (52%)
Query: 281 NVFGIR-KKHRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA 338
NV I +H Y V+ +A +F++H VR IVG L VG S + +L AK T A
Sbjct: 177 NVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLA 236
Query: 339 SPMAPACGLSLGFV----KYDLPE 358
+ A A GL L V +YDLP+
Sbjct: 237 AATAKAEGLYLVAVDYPDRYDLPK 260
>TIGR_CMR|CHY_2276 [details] [associations]
symbol:CHY_2276 "tRNA pseudouridine synthase A"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:YP_361085.1 STRING:Q3A9U9 GeneID:3728226
KEGG:chy:CHY_2276 PATRIC:21277623
BioCyc:CHYD246194:GJCN-2275-MONOMER Uniprot:Q3A9U9
Length = 246
Score = 280 (103.6 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 66/192 (34%), Positives = 104/192 (54%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ + + + Y GT F+G QKQ N +T+ G+LEE HK + +PV + + RTDAGVHA
Sbjct: 4 LPNFKLTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILKEPVKVIGAGRTDAGVHALG 63
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + + P + +P +N+ L + I V + VP DFHAR+ A+
Sbjct: 64 QVVNFSAPW---KAPVDKIP--------EILNNTLPTA--IRVLEAEIVPDDFHARYSAR 110
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
++ Y Y + GP P +E+ AW + ++LD + +A + L+G HDFS F A+G +
Sbjct: 111 KKEYRYYLYYGP-PSPFYER-YAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGKN 168
Query: 236 PIRTLDELHVSE 247
PI+T+ E E
Sbjct: 169 PIKTMFEASYRE 180
Score = 62 (26.9 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 21/57 (36%), Positives = 24/57 (42%)
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFLY R++ G L +G V IL A APA GL L V Y
Sbjct: 191 ADSFLYKMARILTGTLVEIGLNGHP-ERVREILTTGNKKLAGKTAPAHGLFLVKVFY 246
>TIGR_CMR|CBU_0892 [details] [associations]
symbol:CBU_0892 "tRNA pseudouridine synthase A"
species:227377 "Coxiella burnetii RSA 493" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248672 ProtClustDB:PRK00021 OMA:TPFRNVH
RefSeq:YP_338281.1 ProteinModelPortal:Q4AAX9 SMR:Q4AAX9
GeneID:1208785 KEGG:cbu:CBU_0892 PATRIC:17930485
BioCyc:CBUR227377:GJ7S-885-MONOMER Uniprot:Q4AAX9
Length = 261
Score = 245 (91.3 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 61/190 (32%), Positives = 94/190 (49%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + + Y G+ + G Q Q +TV G +E+A PV ++ + RTDAGVHA++ V
Sbjct: 3 RIALGIRYDGSAYHGWQVQEALKTVQGEVEKALSAVANHPVFVTCAGRTDAGVHASAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D D + V A N L DI + + V DFHAR+ A R
Sbjct: 63 HFDTTAYRS----------DHAWVFGA-NSNLPH--DISILWAKAVEEDFHARYSAMARR 109
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y + + ++ K WH LD + MQ + L+G HDFSSF+ +GCQ+ +P+R
Sbjct: 110 YRYIVYNHEIRPAILRKAIGWHY-RPLDEKRMQAGAQYLIGEHDFSSFQGAGCQSRTPVR 168
Query: 239 TLDELHVSEV 248
+ ++ + +
Sbjct: 169 KIFQIEIYRI 178
Score = 94 (38.1 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 285 IRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPA 344
I + R + +A +FL H VR I GVL A+G+GE + +LKAK P
Sbjct: 175 IYRIRRMVVIEVQANAFLLHMVRNIAGVLIAIGSGEKHPDWAQTVLKAKDRRQGGVTVPP 234
Query: 345 CGLSLGFVKY 354
GL L V Y
Sbjct: 235 NGLYLVEVNY 244
>UNIPROTKB|F1PXJ5 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 OMA:WALPADC GeneTree:ENSGT00510000048520
EMBL:AAEX03003844 Ensembl:ENSCAFT00000030633 Uniprot:F1PXJ5
Length = 303
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 82/196 (41%), Positives = 112/196 (57%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVL---EEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
R L+ +Y G +G + VGVL EEA + PV ++SSRTDAGVHA
Sbjct: 13 RSLVYSQYWGRALNGVAAVRGSQRAVGVLNYLEEAAKRLNSVVPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S G+ PP V+ A+N ++ I V VPSDFHAR A
Sbjct: 73 SNAAHLDVQRRS----GQ--PPFSPEVLAEALNAHVRHPA-IRVLQAFRVPSDFHARHAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+++G P+ LSVFE++R W + + LD+ AMQEA + L+G HDF +F+++G
Sbjct: 126 TSRTYLYRLVTGCHRPDQLSVFERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSAG 185
Query: 231 CQANSPIRTLDELHVS 246
S +RTL VS
Sbjct: 186 SPTTSSVRTLRRASVS 201
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 44/152 (28%), Positives = 71/152 (46%)
Query: 215 KVLVGCH---DFSSFRASGC-QANSPIRTLDELH--VSEVVSTALFSSINQ-DSPVLSSI 267
+++ GCH S F + C + +D + ++ T F + SP SS+
Sbjct: 133 RLVTGCHRPDQLSVFERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSAGSPTTSSV 192
Query: 268 DNSSKLGM-PNGGSN-VFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSD 325
+ + P+ GS V K+ + + +RSFLY QVR + VL AVG G L +
Sbjct: 193 RTLRRASVSPDPGSPFVLAQEKRLHFWNLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQ 252
Query: 326 VERILKAKTVTAA--SPMAPACGLSLGFVKYD 355
V+ IL+++ + +APA GL L V Y+
Sbjct: 253 VKVILESRDPLGRHQARVAPAHGLFLKSVLYE 284
>UNIPROTKB|P65846 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248674 ProtClustDB:PRK00021 OMA:TPFRNVH PIR:D70565
RefSeq:NP_217972.2 RefSeq:NP_338087.1 ProteinModelPortal:P65846
SMR:P65846 EnsemblBacteria:EBMYCT00000002601
EnsemblBacteria:EBMYCT00000071399 GeneID:887590 GeneID:922954
KEGG:mtc:MT3562 KEGG:mtu:Rv3455c PATRIC:18129561
TubercuList:Rv3455c Uniprot:P65846
Length = 297
Score = 249 (92.7 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 72/212 (33%), Positives = 107/212 (50%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + + Y GT F+G Q+ RTV G L+ A PV + + RTDAGVHA+
Sbjct: 21 VVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQ 80
Query: 117 VCHVDV--ERISKRKP--GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
V HVDV + + P G V P ++RR + FL + D+ + D+ P+ F ARF
Sbjct: 81 VAHVDVPADALPNAYPRAGHVGDPEFLPLLRR-LGRFLPA--DVRILDITRAPAGFDARF 137
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVT---EELDLRAMQEACKVLVGCHDFSSFRAS 229
A R Y YR+ + P + E +A ++T ELDL AM A + L+G HDF++F
Sbjct: 138 SALRRHYVYRLSTAPYGV---EPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAF-CR 193
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDS 261
+ + IR L L S T + + + D+
Sbjct: 194 HREGATTIRDLQRLDWSRA-GTLVTAHVTADA 224
Score = 86 (35.3 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +F + VR +VG L AVG + +L A ++ +APA GL+L ++ D P
Sbjct: 222 ADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTL--IQVDYP 279
Query: 358 EDDQTDAAESLET 370
DDQ A+ +L T
Sbjct: 280 PDDQL-ASRNLVT 291
>UNIPROTKB|Q9KTA4 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 236 (88.1 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 64/188 (34%), Positives = 92/188 (48%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT + G Q+Q ++V LE+A K PV + + RTDAGVH V
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D ++R+ +V + DI V VP +FHARF A R
Sbjct: 62 HFDTT--AERQ-----------MVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + + + H ELD+ MQ+A + L+G +DF+SFRA CQ+ SP R
Sbjct: 109 YRYVIYNHVYRPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWR 167
Query: 239 TLDELHVS 246
+ L+V+
Sbjct: 168 NVMHLNVT 175
Score = 98 (39.6 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 288 KHRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
+H Y VI +A +F++H VR I G L AVG GE ++ +L K T A+ A A G
Sbjct: 176 RHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEG 235
Query: 347 LSLGFVKY 354
L L V Y
Sbjct: 236 LYLVSVDY 243
>TIGR_CMR|VC_0999 [details] [associations]
symbol:VC_0999 "tRNA pseudouridine synthase A" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 236 (88.1 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 64/188 (34%), Positives = 92/188 (48%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT + G Q+Q ++V LE+A K PV + + RTDAGVH V
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D ++R+ +V + DI V VP +FHARF A R
Sbjct: 62 HFDTT--AERQ-----------MVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + + + H ELD+ MQ+A + L+G +DF+SFRA CQ+ SP R
Sbjct: 109 YRYVIYNHVYRPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWR 167
Query: 239 TLDELHVS 246
+ L+V+
Sbjct: 168 NVMHLNVT 175
Score = 98 (39.6 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 288 KHRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
+H Y VI +A +F++H VR I G L AVG GE ++ +L K T A+ A A G
Sbjct: 176 RHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEG 235
Query: 347 LSLGFVKY 354
L L V Y
Sbjct: 236 LYLVSVDY 243
>UNIPROTKB|J9P592 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 GeneTree:ENSGT00510000048520 EMBL:AAEX03003844
Ensembl:ENSCAFT00000048781 Uniprot:J9P592
Length = 305
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 78/179 (43%), Positives = 107/179 (59%)
Query: 73 GSQKQLNCRTVVGVLEEAFHKFIGQ-PVSISLSSRTDAGVHAASNVCHVDVERISKRKPG 131
GSQ+ + V+ LEEA + PV ++SSRTDAGVHA SN H+DV+R S G
Sbjct: 31 GSQRAVG---VLNYLEEAAKRLNSVVPVRFTISSRTDAGVHALSNAAHLDVQRRS----G 83
Query: 132 EVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSG---PE 188
+ PP V+ A+N ++ I V VPSDFHAR A RTY YR+++G P+
Sbjct: 84 Q--PPFSPEVLAEALNAHVRHPA-IRVLQAFRVPSDFHARHAATSRTYLYRLVTGCHRPD 140
Query: 189 PLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVS 246
LSVFE++R W + + LD+ AMQEA + L+G HDF +F+++G S +RTL VS
Sbjct: 141 QLSVFERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSAGSPTTSSVRTLRRASVS 199
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 44/152 (28%), Positives = 71/152 (46%)
Query: 215 KVLVGCH---DFSSFRASGC-QANSPIRTLDELH--VSEVVSTALFSSINQ-DSPVLSSI 267
+++ GCH S F + C + +D + ++ T F + SP SS+
Sbjct: 131 RLVTGCHRPDQLSVFERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSAGSPTTSSV 190
Query: 268 DNSSKLGM-PNGGSN-VFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSD 325
+ + P+ GS V K+ + + +RSFLY QVR + VL AVG G L +
Sbjct: 191 RTLRRASVSPDPGSPFVLAQEKRLHFWNLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQ 250
Query: 326 VERILKAKTVTAA--SPMAPACGLSLGFVKYD 355
V+ IL+++ + +APA GL L V Y+
Sbjct: 251 VKVILESRDPLGRHQARVAPAHGLFLKSVLYE 282
>TIGR_CMR|GSU_2877 [details] [associations]
symbol:GSU_2877 "tRNA pseudouridine synthase A"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:NP_953919.1 ProteinModelPortal:P60350
GeneID:2688667 KEGG:gsu:GSU2877 PATRIC:22028615
BioCyc:GSUL243231:GH27-2866-MONOMER Uniprot:P60350
Length = 244
Score = 228 (85.3 bits), Expect = 8.6e-27, Sum P(2) = 8.6e-27
Identities = 64/186 (34%), Positives = 96/186 (51%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT ++G Q Q N ++ V+E A + + +PV + S RTDAGVHA V D
Sbjct: 6 LILEYDGTNYAGWQLQPNGLSIQEVVEGALARLLKEPVRLRASGRTDAGVHARGMVAAFD 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+R +P S +N L + + D +P F+ RF A + Y Y
Sbjct: 66 TDRS--------IPLRAFS---DGLNALLPPDIAVRSAD-EALPG-FNPRFAATGKHYRY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I G E S + ++WHV L+L AM+EA + L G DF+SFR +GC A + IR +D
Sbjct: 113 TIHRG-ERRSPLVRLQSWHVRGALNLAAMREAARHLTGERDFASFRTAGCAARTTIRRVD 171
Query: 242 ELHVSE 247
+ +S+
Sbjct: 172 AVEISD 177
Score = 92 (37.4 bits), Expect = 8.6e-27, Sum P(2) = 8.6e-27
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL + VR++VG L VG G+LT V +++ V A P AP GL L V++
Sbjct: 191 FLRNMVRIMVGTLVEVGRGKLTPEHVAQMVVCPGVVPAGPTAPPQGLCLQKVRF 244
>UNIPROTKB|F1LXZ7 [details] [associations]
symbol:Pusl1 "tRNA pseudouridine synthase" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 RGD:1559560 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00359178 Ensembl:ENSRNOT00000036307 ArrayExpress:F1LXZ7
Uniprot:F1LXZ7
Length = 217
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 63/142 (44%), Positives = 85/142 (59%)
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVHA SN H+D++R +PG PP +V +A+N L+ I V VP+DF
Sbjct: 1 AGVHALSNAAHLDIQR----RPGR--PPFSPEIVTKALNTHLKHPA-IRVLKAFRVPNDF 53
Query: 169 HARFRAQERTYFYRIL---SGPEPLSVFEKDRAWHV-TEELDLRAMQEACKVLVGCHDFS 224
HAR A RTY YR+ SGP L VFE++ W + TE LD+ AMQEA + L+G HDFS
Sbjct: 54 HARHAATSRTYLYRLATGCSGPNQLPVFEQNVCWSLQTEYLDIAAMQEAAQHLLGTHDFS 113
Query: 225 SFRASGCQANSPIRTLDELHVS 246
+F+++G +RTL + VS
Sbjct: 114 AFQSAGSPVPHAVRTLRRVSVS 135
>UNIPROTKB|E1BUI0 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:AADN02040857 EMBL:AADN02040858
IPI:IPI00574950 RefSeq:XP_417580.2 UniGene:Gga.10892
Ensembl:ENSGALT00000002630 GeneID:419419 KEGG:gga:419419
NextBio:20822478 Uniprot:E1BUI0
Length = 291
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 70/192 (36%), Positives = 106/192 (55%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYL+ +Y GT++SG + ++ +GV LE+A P+ +SSRTD+GVHA
Sbjct: 7 RYLVFFQYWGTKYSGVMQTSAEQSGIGVQNYLEKAAQNLKPVVPIKFHISSRTDSGVHAL 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
N H+D++R PG+ P V+ +NH L+ E I + V ++FHARF A
Sbjct: 67 CNSAHLDIQRA----PGK--PAFQERVLIGCLNHHLKPE-PIRILSAYRVTNNFHARFSA 119
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+L G + VFE+D W L++ AMQ+A + L+G HDFS+F +
Sbjct: 120 LSRTYIYRLLMGCTHHSEIPVFERDLCWAPPGGYLNVPAMQDAAQFLLGTHDFSTFCSLN 179
Query: 231 CQA--NSPIRTL 240
+ SP++T+
Sbjct: 180 SETPFRSPVKTI 191
Score = 137 (53.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 58/194 (29%), Positives = 90/194 (46%)
Query: 187 PEPLSVFEKDRAWHVTEELDLR--AMQEAC--KVLVGCHDFSS---FRASGCQA------ 233
PEP+ + A+ VT R A+ ++L+GC S F C A
Sbjct: 98 PEPIRILS---AYRVTNNFHARFSALSRTYIYRLLMGCTHHSEIPVFERDLCWAPPGGYL 154
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGM-PNGG--SNVFGIRKKHR 290
N P + + F S+N ++P S + + + P+ G S+ + R +
Sbjct: 155 NVPAMQDAAQFLLGTHDFSTFCSLNSETPFRSPVKTILQADIQPSSGFLSHHYEYRGL-Q 213
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA--ASPMAPACGLS 348
+E+ ++RSFLY QVR +VG L AVG G+L ++ +L+ K A A MAP+ GL
Sbjct: 214 FWELKFKSRSFLYRQVRRMVGALVAVGQGKLAPHHIKELLEMKDARAFPAFAMAPSSGLF 273
Query: 349 LGFVKYDLPEDDQT 362
L V+Y+ D QT
Sbjct: 274 LKSVEYN-EADLQT 286
>FB|FBgn0083976 [details] [associations]
symbol:CG34140 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 EMBL:AE014296 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
GeneTree:ENSGT00510000048520 EMBL:BT088434 RefSeq:NP_001036574.1
UniGene:Dm.21318 SMR:Q0E8K6 STRING:Q0E8K6
EnsemblMetazoa:FBtr0110975 GeneID:4379908 KEGG:dme:Dmel_CG34140
FlyBase:FBgn0083976 InParanoid:Q0E8K6 OMA:HHDFSSF OrthoDB:EOG4CNP7D
NextBio:855816 Uniprot:Q0E8K6
Length = 306
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 96/318 (30%), Positives = 145/318 (45%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN--------CRTVVGVLEEAFHKFIG-QPVSISLSSRTDA 109
RYL+ + YIGT F G QK +N +++ G LE A F + LSSRTDA
Sbjct: 3 RYLLNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELALQVFHPTNEIHTVLSSRTDA 62
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDF 168
GVHA + VD+ER + G+ P+D++++ +N L + I V + V + F
Sbjct: 63 GVHALHSTVQVDLERPN----GQ---PYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSF 115
Query: 169 HARFRAQERTYFYRILSGPEPL--SVFEKDRAWHV---TEELDLRAMQEACKVLVGCHDF 223
H R+ A RTY YR P ++R++ EE+D C L
Sbjct: 116 HCRYDAIGRTYLYRFAVAKVPTLGDCSLRNRSFETFIPVEEID------RCYFLQS---- 165
Query: 224 SSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLS--SIDNSS-KLGMPNG-G 279
SSF QA + R +H + + +D P+ + ID + + G
Sbjct: 166 SSFDIKRVQAAA--RMFIGVHDFRTFMSVSRQKVCRDHPMFTVRKIDEINIRPGETRALS 223
Query: 280 SNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAAS 339
SN + + +++ RA+SFLY QVR IVG L A+G G + + ++L + +
Sbjct: 224 SNAIQAAETYNYWDIEIRAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWD 283
Query: 340 P---MAPACGLSLGFVKY 354
+APACGL L V Y
Sbjct: 284 HRVLLAPACGLYLCRVHY 301
>TAIR|locus:2077552 [details] [associations]
symbol:AT3G06950 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:GKSFLWE EMBL:BT029513
IPI:IPI00532571 RefSeq:NP_187351.2 UniGene:At.18751
UniGene:At.40432 ProteinModelPortal:A1A6J3 SMR:A1A6J3 STRING:A1A6J3
EnsemblPlants:AT3G06950.1 GeneID:819880 KEGG:ath:AT3G06950
TAIR:At3g06950 InParanoid:A1A6J3 PhylomeDB:A1A6J3
ProtClustDB:CLSN2690754 Genevestigator:A1A6J3 Uniprot:A1A6J3
Length = 323
Score = 188 (71.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 60/200 (30%), Positives = 102/200 (51%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF--IGQP-VSISLSSRTDAGVHAAS 115
++ + + Y GTRF+G Q Q + T+ +LE+A + +G+ + + + RTDAGVHA
Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWG 101
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSV--VRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H V P + +S+ A+N L DI V ++ +FHARF
Sbjct: 102 QVAHF------------VTPFNYTSLDSFHAALNGLLPK--DIRVRELSAAVPEFHARFS 147
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A + Y Y+I + + F++ A+H +L+ M+EA + VG HDFS+F A+ +
Sbjct: 148 ASSKVYRYQIYNDTF-MDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAF-ANATRE 205
Query: 234 NS---PIRTLDELHVSEVVS 250
+ P++T+ V ++ S
Sbjct: 206 DGVPDPLKTISRFDVIQMGS 225
Score = 65 (27.9 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 24/58 (41%), Positives = 28/58 (48%)
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKT--VTAASPMAPAC--GLSLGFVKY 354
FLY QVR +V +L +G L V IL+ K V A PA GL L VKY
Sbjct: 236 FLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKY 293
>GENEDB_PFALCIPARUM|PFE0815w [details] [associations]
symbol:PFE0815w "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL844504 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 RefSeq:XP_001351720.1
ProteinModelPortal:Q8I3U5 EnsemblProtists:PFE0815w:mRNA
GeneID:812978 KEGG:pfa:PFE0815w EuPathDB:PlasmoDB:PF3D7_0516300
Uniprot:Q8I3U5
Length = 681
Score = 106 (42.4 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
K+ Y+ + + FLYH +R+IVG L VG G L V DV L AP+ GL
Sbjct: 600 KNNLYQFVIQGDRFLYHMIRIIVGTLVQVGVGLLNVEDVRDALHLCKPLKVKLCAPSQGL 659
Query: 348 SLGFVKYDLPED 359
L + P D
Sbjct: 660 CLNKILLQEPLD 671
Score = 101 (40.6 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 40/131 (30%), Positives = 61/131 (46%)
Query: 79 NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHD 138
N V G++ +FIG SRTD GVHA +C + IS K PP D
Sbjct: 206 NQNNVNGIINNKPFEFIGV-------SRTDKGVHAKEYIC----QYISYEKE----PPCD 250
Query: 139 SSV--VRRAVNHFLQSEGDIMVTDVRCVPSD-FHARFRAQERTYFYRI-LSGP-EPLSVF 193
+ ++R++N L DI + V P D F+ RF + Y Y + + P +PL
Sbjct: 251 GDMEHIKRSLNSLLNK--DIKILAVLKSPHDHFNIRFHNSGKIYTYNLDIRNPSQPL--- 305
Query: 194 EKDRAWHVTEE 204
E++ AW + ++
Sbjct: 306 ERNYAWQLYDD 316
Score = 65 (27.9 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 19/86 (22%), Positives = 37/86 (43%)
Query: 165 PSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFS 224
PS +H ++ Y +S + + K++ D+ ++E K+ +G H+F
Sbjct: 518 PSFYHKNMKSS-----YNDIS--HSMKIINKEKEIRSVIPCDINKIKECAKLFIGHHNFE 570
Query: 225 SFRAS--GCQANSPIRTLDELHVSEV 248
FR + G + I T +H +V
Sbjct: 571 CFRGTLKGTEKLRKINTFCTIHFLDV 596
Score = 45 (20.9 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 52 STNKRIQRYLIAVEYIGTRFSG 73
S K++ L+ V Y GT ++G
Sbjct: 100 SNRKKLTNLLLIVNYDGTNYNG 121
>UNIPROTKB|Q8I3U5 [details] [associations]
symbol:PFE0815w "tRNA pseudouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL844504 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 RefSeq:XP_001351720.1
ProteinModelPortal:Q8I3U5 EnsemblProtists:PFE0815w:mRNA
GeneID:812978 KEGG:pfa:PFE0815w EuPathDB:PlasmoDB:PF3D7_0516300
Uniprot:Q8I3U5
Length = 681
Score = 106 (42.4 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
K+ Y+ + + FLYH +R+IVG L VG G L V DV L AP+ GL
Sbjct: 600 KNNLYQFVIQGDRFLYHMIRIIVGTLVQVGVGLLNVEDVRDALHLCKPLKVKLCAPSQGL 659
Query: 348 SLGFVKYDLPED 359
L + P D
Sbjct: 660 CLNKILLQEPLD 671
Score = 101 (40.6 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 40/131 (30%), Positives = 61/131 (46%)
Query: 79 NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHD 138
N V G++ +FIG SRTD GVHA +C + IS K PP D
Sbjct: 206 NQNNVNGIINNKPFEFIGV-------SRTDKGVHAKEYIC----QYISYEKE----PPCD 250
Query: 139 SSV--VRRAVNHFLQSEGDIMVTDVRCVPSD-FHARFRAQERTYFYRI-LSGP-EPLSVF 193
+ ++R++N L DI + V P D F+ RF + Y Y + + P +PL
Sbjct: 251 GDMEHIKRSLNSLLNK--DIKILAVLKSPHDHFNIRFHNSGKIYTYNLDIRNPSQPL--- 305
Query: 194 EKDRAWHVTEE 204
E++ AW + ++
Sbjct: 306 ERNYAWQLYDD 316
Score = 65 (27.9 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 19/86 (22%), Positives = 37/86 (43%)
Query: 165 PSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFS 224
PS +H ++ Y +S + + K++ D+ ++E K+ +G H+F
Sbjct: 518 PSFYHKNMKSS-----YNDIS--HSMKIINKEKEIRSVIPCDINKIKECAKLFIGHHNFE 570
Query: 225 SFRAS--GCQANSPIRTLDELHVSEV 248
FR + G + I T +H +V
Sbjct: 571 CFRGTLKGTEKLRKINTFCTIHFLDV 596
Score = 45 (20.9 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 52 STNKRIQRYLIAVEYIGTRFSG 73
S K++ L+ V Y GT ++G
Sbjct: 100 SNRKKLTNLLLIVNYDGTNYNG 121
>TIGR_CMR|CJE_0914 [details] [associations]
symbol:CJE_0914 "tRNA pseudouridine synthase A"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 RefSeq:YP_178916.1
ProteinModelPortal:Q5HUW9 STRING:Q5HUW9 GeneID:3231427
KEGG:cjr:CJE0914 PATRIC:20043595 HOGENOM:HOG000248673 OMA:NYCYEYL
BioCyc:CJEJ195099:GJC0-934-MONOMER Uniprot:Q5HUW9
Length = 240
Score = 107 (42.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 52/180 (28%), Positives = 72/180 (40%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAF-HKFIGQPVSISLSSRTDAGVHAASNVCHV 120
I Y GT F GS Q + + V L A H I P + ++SRTD GVHA+ V V
Sbjct: 5 IIFSYDGTAFLGSATQPHKKGVQDALSGALSHLGIFSP--LLMASRTDKGVHASYAVASV 62
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ G+ + +++ +N F S I + + V DF RF + R Y
Sbjct: 63 EC--------GDYFT--NLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYR 110
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y I S S F H + DL E VG D F SG + +R +
Sbjct: 111 Y-IFSHSS-YSPFMASYV-HFYPKFDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREI 167
Score = 53 (23.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 297 RARSFLYHQVRL-IVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+A FL Q+RL + VLK + G+++ +++ ++AK +AP GL L + Y
Sbjct: 184 KANGFLRGQIRLSVASVLKVL-EGKMSEKELKEQIEAKKQYNHF-LAPPNGLYLSRICY 240
>POMBASE|SPAC25B8.05 [details] [associations]
symbol:SPAC25B8.05 "tRNA-pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPAC25B8.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0003723 GO:GO:0016829 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000199032 OMA:KFSRCGR OrthoDB:EOG46T69C PIR:T50192
RefSeq:NP_594465.1 ProteinModelPortal:Q9UTB3 STRING:Q9UTB3
EnsemblFungi:SPAC25B8.05.1 GeneID:2541578 KEGG:spo:SPAC25B8.05
NextBio:20802672 Uniprot:Q9UTB3
Length = 450
Score = 114 (45.2 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 53/168 (31%), Positives = 73/168 (43%)
Query: 66 YIGTRFSGSQKQLN---CRTVVGVLEEAFHK--FIGQPVSISLS--SRTDAGVHAASNVC 118
Y G ++G QL TV G + EA + I P S S S RTD GV A V
Sbjct: 100 YCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCSFSRCGRTDKGVSAMGQVI 159
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
++V R S+R+P + +N L + DI +T P F ARF ++R
Sbjct: 160 SLNV-RHSERRP---------IIYCDVLNRLLPA--DIRITGYAFPPEGFDARFSCKQRH 207
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSF 226
Y Y +F KD + LD+ M EA + +G HDF +F
Sbjct: 208 YKY----------LFTKD---YPGGSLDIDRMNEAAALYLGEHDFRNF 242
Score = 55 (24.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 23/80 (28%), Positives = 35/80 (43%)
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAAS--PMAPACGLSL 349
Y + +FL+HQVR ++ +L +G S + +L K V MA L L
Sbjct: 273 YAFDLQGTAFLWHQVRCMMAILFLIGQKLEPASLINDLLDIKKVPTKPIYDMASEYPLIL 332
Query: 350 ---GF--VKYDLPEDDQTDA 364
F +++ LP D T A
Sbjct: 333 YDCDFDNIEWTLPTDSPTTA 352
>FB|FBgn0038811 [details] [associations]
symbol:CG4159 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE014297 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
RefSeq:NP_001163664.1 UniGene:Dm.27944 ProteinModelPortal:E1JIR1
SMR:E1JIR1 EnsemblMetazoa:FBtr0302323 GeneID:42440
KEGG:dme:Dmel_CG4159 FlyBase:FBgn0038811 PhylomeDB:E1JIR1
GenomeRNAi:42440 NextBio:828799 Bgee:E1JIR1 Uniprot:E1JIR1
Length = 442
Score = 98 (39.6 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
+ +SF+ HQ+R +VG+ A+ G T + +ER L + + PMAP GL L V Y+
Sbjct: 302 KGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEERLDL--PMAPGLGLVLDTVHYER 359
Query: 357 PED 359
D
Sbjct: 360 YND 362
Score = 72 (30.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 56 RIQRYLIAV--EYIGTRFSGSQKQLNCRTVVGVLEEAF--HKFIGQP----VSISL---S 104
RI+R A+ Y G + G Q+ +T+ L +A HK+I + + IS +
Sbjct: 98 RIKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRA 157
Query: 105 SRTDAGVHAASNVCHV 120
+RTD GV AA VC V
Sbjct: 158 ARTDKGVSAARQVCSV 173
>UNIPROTKB|J3KTG4 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL139287 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.660 PANTHER:PTHR11142
HGNC:HGNC:26914 ChiTaRS:PUSL1 Ensembl:ENST00000467712
Uniprot:J3KTG4
Length = 126
Score = 101 (40.6 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 209 AMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVS 246
AMQEA + L+G HDFS+F+++G SP+RTL + VS
Sbjct: 3 AMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVS 40
Score = 98 (39.6 bits), Expect = 0.00021, P = 0.00021
Identities = 35/113 (30%), Positives = 57/113 (50%)
Query: 248 VVSTALFSSINQ-DSPVLSSIDNSSKLGMPNGGSNVFGI---RKKHRSYEVIARARSFLY 303
++ T FS+ SPV S + ++ + G ++ +K R + + ++SFLY
Sbjct: 11 LLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSFLY 70
Query: 304 HQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLSLGFVKY 354
QVR + VL AVG G L + V+ IL+++ + +APA GL L V Y
Sbjct: 71 RQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 123
>SGD|S000001895 [details] [associations]
symbol:DEG1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000001895 GO:GO:0005634 GO:GO:0005737 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 BRENDA:5.4.99.12 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
GeneTree:ENSGT00510000047444 EMBL:AY693197 PIR:S14145
RefSeq:NP_116655.1 ProteinModelPortal:P31115 SMR:P31115
DIP:DIP-5151N IntAct:P31115 MINT:MINT-531752 STRING:P31115
PaxDb:P31115 PeptideAtlas:P31115 PRIDE:P31115 EnsemblFungi:YFL001W
GeneID:850550 KEGG:sce:YFL001W CYGD:YFL001w OMA:KFSRCGR
OrthoDB:EOG46T69C NextBio:966327 Genevestigator:P31115
GermOnline:YFL001W Uniprot:P31115
Length = 442
Score = 107 (42.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 67/266 (25%), Positives = 113/266 (42%)
Query: 3 EFAKRISECSEQASKIPEEKEEDHQNDSXXXXXXXXXXXXXXXXXXXXMSTNKRIQRYL- 61
+ +RI+E E A+K EK + +++ +K R++
Sbjct: 37 QLIRRITEL-ENANKPHSEKFQHIEDNKKRKISQEEVTRSKAKKAPKKFDFSKHNTRFIA 95
Query: 62 IAVEYIGTRFSGS--QKQLN-CRTVVGVLEEAFHK------FIGQPVSISLSSRTDAGVH 112
+ Y+G ++G QK+ TV G + EA +K + Q S RTD GV
Sbjct: 96 LRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVS 155
Query: 113 AASNVCHVDVERISKRKPGEVLPPHDSSVVR--RAVNHFLQSEGDIMVTDVRCV--PSDF 168
A + V ++V R + + P +DS + +N L DI ++ V C+ P +F
Sbjct: 156 AMNQVISLEV-RSNLTDEEQRDPTNDSREIPYVHVLNQLLPD--DIRISAV-CLRPPPNF 211
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAW-HVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF R Y Y I +G L++ + +A + E D R CK L G ++F+
Sbjct: 212 DARFSCVHRHYKY-IFNGKN-LNIEKMSKAASYFVGERDFRNF---CK-LDGSKQITNFK 265
Query: 228 ASGCQANSPIRTLDE-LHVSEVVSTA 252
+ +S I L E + ++V +A
Sbjct: 266 RT--IISSKILPLSETFYCFDLVGSA 289
Score = 57 (25.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 280 SNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAAS 339
S + + + ++++ A FL+HQVR ++ +L VG L V ++ +L+ + +
Sbjct: 271 SKILPLSETFYCFDLVGSA--FLWHQVRCMMAILFLVGQS-LEVPEI--VLRLTDIEK-T 324
Query: 340 PMAPACGLS--LGFVKYD--LPEDD 360
P P ++ + + YD PE D
Sbjct: 325 PQRPVYEMANDIPLLLYDCKFPEMD 349
>UNIPROTKB|F1P3X5 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AADN02042043 EMBL:AADN02042044
IPI:IPI00588906 Ensembl:ENSGALT00000001417 Uniprot:F1P3X5
Length = 379
Score = 85 (35.0 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 44/192 (22%), Positives = 69/192 (35%)
Query: 3 EFAKRISECSEQASKIPEEKEEDHQNDSXXXXXXXXXXXXXXXXXXXXMSTNKRIQRYLI 62
+ +R+ + E+ ++ E+ E + + S + R + +
Sbjct: 5 QLLRRVRDLEEEVKQLQEKLSEGKEGTAVKDTPSTSRKSKKQQQRPFDFSAHGR-RHVAL 63
Query: 63 AVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHK--FIG--QPVSISLSSRTDAGVHAASNV 117
+ Y+G + G Q N T+ L EA K + Q + RTD GV A V
Sbjct: 64 RIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVSAFGQV 123
Query: 118 CHVDVE-RISKRKP-----GEVLPPHDSSVVRRAVNHFLQS--EGDIMVTDVRCVPSDFH 169
+D+ +S+ K G+ S H L DI V V DF
Sbjct: 124 ISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIRVLAWAPVEPDFS 183
Query: 170 ARFRAQERTYFY 181
ARF +RTY Y
Sbjct: 184 ARFSCLKRTYRY 195
Score = 70 (29.7 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 270 SSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERI 329
S+++ +GG+ G+R R + ++FLYHQVR ++ +L +G ++ +
Sbjct: 241 SAQVTWADGGAES-GLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEIIDEL 299
Query: 330 LKAKTVTAASPMAPACGLSLGF--VKYD 355
L + +P P +++ F V YD
Sbjct: 300 LDVEK----NPRKPQYSMAVEFPLVLYD 323
Score = 45 (20.9 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 204 ELDLRAMQEACKVLVGCHDF 223
+LD+ M A + VG HDF
Sbjct: 201 DLDVALMHTAAQRYVGTHDF 220
>CGD|CAL0000624 [details] [associations]
symbol:orf19.6297 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 CGD:CAL0000624 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:AACQ01000212
EMBL:AACQ01000211 RefSeq:XP_711136.1 RefSeq:XP_711154.1
ProteinModelPortal:Q59N30 STRING:Q59N30 GeneID:3647251
GeneID:3647265 KEGG:cal:CaO19.13676 KEGG:cal:CaO19.6297
Uniprot:Q59N30
Length = 489
Score = 86 (35.3 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 44/141 (31%), Positives = 60/141 (42%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHK------FIGQP---VSISLS 104
N R + A Y+G ++G QL T + +EE F K I +P V S
Sbjct: 128 NMRFVAFKFA--YLGWNYNGLALQLE-PTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRC 184
Query: 105 SRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVR--RAVNHFLQSEGDIMVTDVR 162
RTD GV A + V ++V R + + P D + +N L S DI V +
Sbjct: 185 GRTDKGVSAMNQVISINV-RSNITLENQSNPEFDDLEIDYISVLNANLPS--DIKVHSI- 240
Query: 163 CV--PSDFHARFRAQERTYFY 181
C+ P DF ARF R Y Y
Sbjct: 241 CLRPPPDFDARFSCLSRHYRY 261
Score = 59 (25.8 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 203 EELDLRAMQEACKVLVGCHDFSSF-RASGC-QANSPIRTLDELHVSEVV 249
++LD+ M + K+ G HDF +F + G Q + +R E++ S+++
Sbjct: 266 QDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVR---EIYQSQII 311
Score = 56 (24.8 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVG 317
H+ Y + +FL+HQVR +V +L +G
Sbjct: 314 HQDYYCFDLKGSAFLWHQVRCMVAILFTIG 343
>WB|WBGene00004248 [details] [associations]
symbol:pus-1 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL021572 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
HOGENOM:HOG000031229 OMA:CDARTYF UniGene:Cel.1992 GeneID:180123
KEGG:cel:CELE_W06H3.2 UCSC:W06H3.2a CTD:180123 NextBio:908172
PIR:T26253 RefSeq:NP_507242.1 ProteinModelPortal:Q9XXN0 SMR:Q9XXN0
STRING:Q9XXN0 PRIDE:Q9XXN0 EnsemblMetazoa:W06H3.2a.1
EnsemblMetazoa:W06H3.2a.2 WormBase:W06H3.2a InParanoid:Q9XXN0
ArrayExpress:Q9XXN0 Uniprot:Q9XXN0
Length = 415
Score = 84 (34.6 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 286 RKKHRSY-EVIARARSFLYHQVRLIVGVLKAVGTGELTV-SDVERILKAKTVTAASPMAP 343
RK+ + +++ + +SF+ HQ+R +VG++ V EL + S ++R + + + PMAP
Sbjct: 229 RKEDVEFVQIVIKGQSFVLHQIRKMVGMVITV-IRELHLKSSIQRSFEGQRMDI--PMAP 285
Query: 344 ACGLSLGFVKYDLPEDDQTDAAESL 368
GL L YD + + + E L
Sbjct: 286 GLGLLLERTHYDSYDRKNSKSHEPL 310
Score = 75 (31.5 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 43/184 (23%), Positives = 78/184 (42%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHK--FIG-----QPVSISL--SSRTDA 109
+Y + + Y G ++ G Q Q + T+ L EA +I +P ++RTD
Sbjct: 34 KYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQKEKPFDFFFQRAARTDR 93
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
V AA +C + + R + E + ++ N+ L + DI V +R + FH
Sbjct: 94 AVSAARQMCGMQLPRDDAKYQAE-----GAGIL----NNILPA--DIRVFGMRRTTNFFH 142
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEK-----DRAWHVTEELDLRAMQEACKVLVGCHDFS 224
+ + RTY Y P VF K + ++ ++ E L + + +G H+F
Sbjct: 143 PQKQCDHRTYSYTC-----PSFVFAKPTELTNSSFRLSPET-LAEVNSILSIYLGTHNFF 196
Query: 225 SFRA 228
++ A
Sbjct: 197 NYTA 200
>ASPGD|ASPL0000040109 [details] [associations]
symbol:AN3170 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:BN001306
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000199032
EnsemblFungi:CADANIAT00009900 OMA:LWDCIFP Uniprot:C8VIE4
Length = 664
Score = 117 (46.2 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 53/191 (27%), Positives = 83/191 (43%)
Query: 165 PSDFHARFRAQERTYFYRILSG-----PEPLSVFEK--DRAWHVTEE-LDLRAMQEACKV 216
P DF AR+ +ER Y Y P PL + + D E LD+ AM+EA K
Sbjct: 324 PEDFDARYSCRERHYKYFFTQPAFSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKY 383
Query: 217 LVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNS--SKLG 274
G HDF +F C+ ++ + ++ ++ A ++ + L ++ S L
Sbjct: 384 FEGVHDFRNF----CKVDTS-KQIENFE--RIIYRADIELLDPRNSPLGYVNRPEFSALN 436
Query: 275 MPNGGS---NVFG-IRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERIL 330
P+ S G + + Y + +FL+HQVR +VG+L VG G + S V +L
Sbjct: 437 YPDTDSLTQKPAGSVPPGCQVYVFNLQGSAFLWHQVRHMVGILFLVGQGLESPSVVRELL 496
Query: 331 KAKTVTAASPM 341
T PM
Sbjct: 497 DV-TKNPRKPM 506
Score = 42 (19.8 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 66 YIGTRFSGSQKQLNCRTVVGVLEEAFHK 93
Y+G R+ G + N T + +EE K
Sbjct: 173 YLGQRYQGLEHANNNPTALPTIEEEMWK 200
Score = 40 (19.1 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 102 SLSSRTDAGVHAASNVCHVDVE--RISKRKPGEVLPPHDSSVVRR 144
S + RTD GV A V + V R +++P +D++ R
Sbjct: 241 SKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSNDTAETTR 285
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 382 362 0.00082 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 609 (65 KB)
Total size of DFA: 223 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.37u 0.13s 28.50t Elapsed: 00:00:03
Total cpu time: 28.38u 0.13s 28.51t Elapsed: 00:00:03
Start: Thu May 9 18:21:02 2013 End: Thu May 9 18:21:05 2013